Citrus Sinensis ID: 017476

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-
Protein Sequence
MRVSLTRACRFYTSPITPKPSFFSPRAILNQPFSSSSSSSSHSSTPKPKTPLFLKPPKYSATLSDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFRQ
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccccccccHHHHHccccccccccccHHHHHHHHHHHHHccccHHHHHcccccccEEEEccccccccccHHHHHHHHHHHHHHHcccccccccEEEEccHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHHcccccEEEEEcccccccccccccEEEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccEEEEEEccccHHHHHHHHHHHccccccEEEEEEccccccccEEEEEEc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEEcccccccccccccccHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccEEEEEcccHHccccEEEcccEEccccHHHHHHHHHHHHHHcccccccccEEEEccccHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHccccccEEEEEccHHcccccccccEEEEEEccccccHHcHHHccHHHHHcccHHHHcccccHHHHHHHHHHHcHHHcccccEEEEEEcccHHHHHHHHHHHHcccccccEEEEEEccccccEEEEEEEc
Coil and Loop (DISEMBL)
MRVSLTRAcrfytspitpkpsffsprailnqpfsssssssshsstpkpktplflkppkysatlsDLKKWHNWAKALASSVRstfadsdngpdssilFRELNWLvedsledpslipqlgfqnnsqSVRLRIGLDELYGLWKQRiekrkpfqylvGCEHWRDLVLSVeegvfiprpetELMVDLVSDVLvrdndglrdgfwvdlgtgsgAIAIGIARVLgskgsiiavDLNPLAAAVAAFNAQRYGLQDIIeirqgswfgklkdvegklsgvvsnppyipsddisglqvevgkheprlaldggvdgLDYLLHLCNgtasmlkpggffafetnGEKQCKFLKNYlendsacsfcnvsivsdFAGIQRFVTGFRQ
Flexible Loop (DISEMBL)
mrvsltracrfytspitpkpsffsPRAILNQPfsssssssshsstpkpktplflkpPKYSATLSDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLipqlgfqnnsqsVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFRQ
Low Complexity Region (SEG)
MRVSLTRACRFYTSPITPKPSFFSPRAILNQPFsssssssshsstpkpktplflkppkYSATLSDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTgsgaiaigiaRVLGSKGSIIavdlnplaaavaafnaQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRlaldggvdgldyllhlCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFRQ
Disordered region (IsUnstruct)
*******ACRFYT***********************************************ATLSDLKKWHNWAKALASS**************SILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTG***
Disordered Region (DISOPRED)
********************************************************PKYSATLSDLKKWHNWAKALA***************SSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFRQ
Disordered Region (DISEMBL)
MRVSLTRACRFYTSPITPKPSFFSPRAILNQ******************TPLFLKPPKYSATLSDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFRQ
Disordered Region (DISPRO)
MRVSLTRACRFYTSPITPKPSFFSPRAILNQ************STPKPKTPLFLKPPKYSATLSDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFRQ
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRVSLTRACRFYTSPITPKPSFFSPRAILNQPFSSSSSSSSHSSTPKPKTPLFLKPPKYSATLSDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFRQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	371	2.2.26 [Sep-21-2011]
P74003	299	Release factor glutamine	N/A	no	0.711	0.882	0.394	3e-44
Q7NJS7	286	Release factor glutamine	yes	no	0.690	0.895	0.405	1e-43
Q8DHV7	291	Release factor glutamine	yes	no	0.749	0.955	0.348	1e-42
Q2RFW1	283	Release factor glutamine	yes	no	0.603	0.791	0.369	3e-31
Q97F67	285	Release factor glutamine	yes	no	0.587	0.764	0.348	8e-28
Q748B2	284	Release factor glutamine	yes	no	0.571	0.746	0.361	6e-27
A9WBM9	283	Release factor glutamine	yes	no	0.576	0.756	0.389	8e-26
Q8R619	354	Release factor glutamine	yes	no	0.582	0.610	0.348	1e-24
Q9A9T7	289	Release factor glutamine	yes	no	0.592	0.761	0.353	6e-24
Q7VDL7	293	Release factor glutamine	yes	no	0.603	0.764	0.353	9e-24

>sp|P74003|PRMC_SYNY3 Release factor glutamine methyltransferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=prmC PE=3 SV=1

 Score =  179 bits (454), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 107/271 (39%), Positives = 155/271 (57%), Gaps = 7/271 (2%)

Query: 99  ELNWLVEDSLEDPSLIPQLGFQN-NSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEH 157
           ELNWL++   +   L   L  Q+   + + L+   + +   W++R+E++ P QYL+G   
Sbjct: 31  ELNWLLQGWTDLDRLT--LRLQDFAHREIALQETWENIQRGWRRRVEEKYPVQYLLGQTQ 88

Query: 158 WRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVL 217
           WRD V+ V + V IPRPETEL++D+V       +       WVDLGTGSGAIA+G+A   
Sbjct: 89  WRDFVIKVTDDVLIPRPETELIIDIVQHEHSALSPSNCADHWVDLGTGSGAIALGLAATF 148

Query: 218 GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYI 277
             +  + AVD +  A A+A  NAQ     D I+  QG W+  L+ ++G++ G+VSNPPYI
Sbjct: 149 -PQALVHAVDCSGSALAIARENAQLNQFGDRIQFHQGYWWEPLEHLKGQVQGMVSNPPYI 207

Query: 278 PSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKF 337
           P  +++ LQ EV KHEP LALDGG DGL  +  L   + + LKPGGF+  E     Q   
Sbjct: 208 PQRELAQLQPEVIKHEPLLALDGGPDGLQAVEQLIRRSPTYLKPGGFWLVEIM-TGQAPM 266

Query: 338 LKNYLENDSACSFCNVSIVSDFAGIQRFVTG 368
           +   L    A  + ++ I  D A I+RFV+ 
Sbjct: 267 VAELLRASGA--YQDIQIHRDLASIERFVSA 295

Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif.
Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: nEC: 1EC: 6

>sp|Q7NJS7|PRMC_GLOVI Release factor glutamine methyltransferase OS=Gloeobacter violaceus (strain PCC 7421) GN=prmC PE=3 SV=1

 Score =  177 bits (449), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 110/271 (40%), Positives = 149/271 (54%), Gaps = 15/271 (5%)

Query: 99  ELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHW 158
           E+++L+E       L  +LG     ++ R     ++L  LW++RIE+  P QYL+G  HW
Sbjct: 25  EIDYLIEAVTGLDRLRVRLGGPQALEAHR-----EKLAALWRRRIEEAMPLQYLLGTAHW 79

Query: 159 RDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG 218
           RDL L V   V IPRPE+E +VD+  D   R   G R    VDLGTGSGAIA+ +AR L 
Sbjct: 80  RDLQLQVNPAVLIPRPESEALVDVAVD-FCRSCAGARV---VDLGTGSGAIAVAVARAL- 134

Query: 219 SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIP 278
              ++ AVD +  A  VA  N +RYGL + + + +G+WF  L         V+SNPPYIP
Sbjct: 135 PGATVWAVDASEAALVVAGANIERYGLSEQVHLLRGNWFVPLP--TQPFDAVLSNPPYIP 192

Query: 279 SDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFL 338
           S +I+ L  EV  HEP  ALDGG DGLD +  +    A  L+PGG  A E     Q   +
Sbjct: 193 SAEIAALMPEVRLHEPLSALDGGSDGLDAVRQIIADAARHLRPGGILALEVMA-GQGPTV 251

Query: 339 KNYLENDSACSFCNVSIVSDFAGIQRFVTGF 369
              L  DS   +  +  V D+AGI+R V  +
Sbjct: 252 VQLLARDS--RYGCIRTVRDWAGIERIVVTY 280

Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif.

Gloeobacter violaceus (strain PCC 7421) (taxid: 251221)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 1

EC: 6

>sp|Q8DHV7|PRMC_THEEB Release factor glutamine methyltransferase OS=Thermosynechococcus elongatus (strain BP-1) GN=prmC PE=3 SV=1

 Score =  174 bits (441), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 106/304 (34%), Positives = 157/304 (51%), Gaps = 26/304 (8%)

Query: 66  LKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQS 125
           L++W +WA+ +  +           P+     REL   +        L  ++  +     
Sbjct: 6   LQRWWHWAQGIIPA-----------PERESGLRELKQFLRAFTGLSPL--EITLRRFPPQ 52

Query: 126 VRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSD 185
           + L++ L EL   W++R ++R P QYL+G  HW DL L V   V IPRPETE   +L++ 
Sbjct: 53  IHLKLPLTELQERWQRRWQERVPLQYLIGVAHWHDLELVVTPSVLIPRPETE---ELLAV 109

Query: 186 VLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGL 245
           V        + G W+DLGTGSGAIAIG+AR+  +   I AVD +  A  VA  N Q+Y L
Sbjct: 110 VAATVPPWQQQGHWLDLGTGSGAIAIGLARLFPA-ALIHAVDCSSEALEVAQVNIQKYAL 168

Query: 246 QDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGL 305
            D +    G+WF  +  ++G++ G+VSNPPYIP+  ++ LQ EV  HEP LALDGG DGL
Sbjct: 169 GDRVRCYVGNWFDPIVPLQGQVQGIVSNPPYIPTSVVATLQPEVQYHEPLLALDGGTDGL 228

Query: 306 DYLLHLCNGTASMLKPGGFFAFE---TNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGI 362
             +  +       L+P G+   E   T G+             +  ++  V I+ D +G 
Sbjct: 229 QAIRQILETAPEYLQPQGWLFIELMATQGKAVAALAM------ATQAYERVEILRDLSGH 282

Query: 363 QRFV 366
            RF+
Sbjct: 283 DRFL 286

Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif.

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 1

EC: 6

>sp|Q2RFW1|PRMC_MOOTA Release factor glutamine methyltransferase OS=Moorella thermoacetica (strain ATCC 39073) GN=prmC PE=3 SV=1

 Score =  136 bits (342), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 88/238 (36%), Positives = 130/238 (54%), Gaps = 14/238 (5%)

Query: 137 GLWKQRIEKRK---PFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDG 193
           G + Q I++R    P QYL G + +  L   V   V IPR +TE++V+ V + L    D 
Sbjct: 55  GRFWQAIDRRAAGYPLQYLTGHQEFMSLDFKVTPAVLIPRQDTEVVVEAVLERL----DP 110

Query: 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ 253
                  D GTGSGAIA+ +A  L  +  + A D++P A  VA  NA++ GL   + + Q
Sbjct: 111 CESYTIADCGTGSGAIALSLAHYL-PRARVYATDISPAALTVAQENARKLGLAARVTLLQ 169

Query: 254 GSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCN 313
           G +   L+ +  KL  +V+NPPYIP+  + GL  +V + EPRLALDGG DGLD    L  
Sbjct: 170 GDFLAPLRGL--KLDALVANPPYIPTAALPGLPADV-RSEPRLALDGGPDGLDAYRFLLP 226

Query: 314 GTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFRQ 371
           G A +L+PGG  A E  G  Q + +K+     +  ++ N  ++ D+AG  R    +R+
Sbjct: 227 GAAGLLRPGGLLALEI-GSDQGQAVKDLAR--AVGAYRNEQVLPDYAGRDRCFLAYRR 281

Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif.

Moorella thermoacetica (strain ATCC 39073) (taxid: 264732)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 1

EC: 6

>sp|Q97F67|PRMC_CLOAB Release factor glutamine methyltransferase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=prmC PE=3 SV=1

 Score =  125 bits (313), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 120/227 (52%), Gaps = 9/227 (3%)

Query: 144 EKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLG 203
           +K+ P +Y+     +  L   VE+GV IPRP+TE++V+ V + +  +N         D+ 
Sbjct: 65  KKKMPIRYITEKCEFMGLDFHVEKGVLIPRPDTEILVEAVLEYIELNNYKK----VCDVC 120

Query: 204 TGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV 263
           TGSGAI + IA+       ++  D++P A  V+  N Q   L+D ++I  G    K  + 
Sbjct: 121 TGSGAIGLSIAK-YAKDVEVLCSDISPDAIRVSKINRQGLNLEDRVKIENGDLLEKPIER 179

Query: 264 EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGG 323
             K   VVSNPPYI  D+I  L  +V  +EP +AL GG DGLD+   + + +  +LKPGG
Sbjct: 180 GEKFDIVVSNPPYIREDEIPKLMDDVKDYEPIIALVGGEDGLDFYRRITSMSKKVLKPGG 239

Query: 324 FFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFR 370
             A+E  G  +   + N LEN+    F ++    DFA + R V   R
Sbjct: 240 LIAYEI-GSDEANEVSNILENE---GFVSIETRKDFARMDRVVLAVR 282

Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif.

Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) (taxid: 272562)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 1

EC: 6

>sp|Q748B2|PRMC_GEOSL Release factor glutamine methyltransferase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=prmC PE=3 SV=1

 Score =  122 bits (305), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 82/227 (36%), Positives = 119/227 (52%), Gaps = 15/227 (6%)

Query: 142 RIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVD 201
           R  KR+P QY++G + +  L   V   V IPR +TE++V+   + L R          +D
Sbjct: 70  RRAKREPLQYILGTQEFCGLDFVVTPSVLIPRHDTEVIVE---EALRRAPHA---AAVLD 123

Query: 202 LGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK 261
           +G GSG IA+ +A+ L     ++ V+ +P A A+A  NA+R+G +  + + +GS F  L 
Sbjct: 124 IGVGSGCIAVALAKQL-PHAQVVGVEQSPGAIALAQRNAERHGAR--VTLFEGSLFEPLG 180

Query: 262 DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKP 321
           D    L  +VSNPPYIP+ D+  LQ EV ++EPR ALDGG DGLD+   +       L P
Sbjct: 181 DQRFDL--IVSNPPYIPTADLEALQPEVREYEPRAALDGGSDGLDFYRLIVPAAPEYLNP 238

Query: 322 GGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTG 368
           GG+   E    +    L  +    S   FC+     D  GI R V G
Sbjct: 239 GGWLMVELGIGQAETVLGMF----SRTGFCDCFTAQDPNGIDRVVGG 281

Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif.

Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) (taxid: 243231)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 1

EC: 6

>sp|A9WBM9|PRMC_CHLAA Release factor glutamine methyltransferase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=prmC PE=3 SV=1

 Score =  118 bits (295), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 88/226 (38%), Positives = 108/226 (47%), Gaps = 12/226 (5%)

Query: 141 QRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWV 200
           +R   R+P  YL+G   +  L L V+  V IPRPETEL+V+L      R N         
Sbjct: 61  ERRANREPVAYLIGHREFFGLDLFVDRRVLIPRPETELLVELTLKEAQRFNHT--PLIIA 118

Query: 201 DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL 260
           D+GTGSGAIAI +A  L     I  VD++P A AVAA N  RY L D I + +G     L
Sbjct: 119 DIGTGSGAIAIALAMHL-PHALIYGVDISPDALAVAAINVTRYRLDDRIRLLEGDLCTPL 177

Query: 261 KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLK 320
                 +  +VSNPPY    +I      V +HEP LALDGG DGLD    L     + LK
Sbjct: 178 P---APVDILVSNPPYTILTEIDE---GVYRHEPHLALDGGSDGLDCYRRLIAAAPTYLK 231

Query: 321 PGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFV 366
           P G    E  G  Q   + + L    A       I  D AG  R V
Sbjct: 232 PNGAILLEI-GSTQAASVVHLLRQ--ALPMAETGIERDLAGHDRIV 274

Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif.

Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) (taxid: 324602)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 1

EC: 6

>sp|Q8R619|PRMC_FUSNN Release factor glutamine methyltransferase OS=Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131) GN=prmC PE=3 SV=1

 Score =  114 bits (284), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 123/227 (54%), Gaps = 11/227 (4%)

Query: 142 RIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVD 201
           R +KRKP QY++G   +  L   + EGV IPR +TE++V+     L+R+   + +   +D
Sbjct: 117 RAKKRKPLQYILGEWEFYGLPFKMSEGVLIPRADTEILVEQCIQ-LMRE---VEEPNILD 172

Query: 202 LGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK 261
           +G+GSGAI+I +A  L S  S+  +D+N  A  +A  N     ++++  I + + FGKL 
Sbjct: 173 IGSGSGAISIAVANELKS-SSVTGIDINEKAIKLAIENKILNKIENVNFI-ESNLFGKL- 229

Query: 262 DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKP 321
           D + K   +VSNPPYI  D+   L  EV  +EP+ AL    DGL +   +       LK 
Sbjct: 230 DKDFKYDLIVSNPPYISKDEYETLMPEVKNYEPQNALTDLGDGLHFYKEISKLAGEYLKD 289

Query: 322 GGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTG 368
            G+ AFE  G  Q K +   L+++   +F  +SIV D+ G  R +  
Sbjct: 290 TGYLAFEI-GYNQAKDVSKILQDN---NFAILSIVKDYGGNDRVIIA 332

Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif.

Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131) (taxid: 190304)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 1

EC: 6

>sp|Q9A9T7|PRMC_CAUCR Release factor glutamine methyltransferase OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=prmC PE=3 SV=2

 Score =  112 bits (279), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 83/235 (35%), Positives = 114/235 (48%), Gaps = 15/235 (6%)

Query: 139 WKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGF 198
           + +R  +R+P  +++G + +  ++L V + V  PRPETE++VD V              F
Sbjct: 62  YLERRARREPVSHIIGRKGFWKILLQVNKNVLTPRPETEVIVDEVLKAFPEHM-----AF 116

Query: 199 -WVDLGTGSGAIAIGI-ARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSW 256
             +DLG GSG I + + A    +KG  + +D +  A AVA  NA    L     +  G W
Sbjct: 117 SMLDLGVGSGTILLAVLAERPAAKG--LGIDASSEALAVARENAANLDLNTRAALLHGDW 174

Query: 257 FGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTA 316
              L      L  VVSNPPYIP++ I  L+ EV  HEPRLALDGG DGL     L     
Sbjct: 175 TTGLGSDSFDL--VVSNPPYIPTEVIDTLEPEVRIHEPRLALDGGPDGLAAYRELAPEIL 232

Query: 317 SMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFRQ 371
            +LKPGG FA E  G  Q + ++       A     V  V D +   R V G + 
Sbjct: 233 RVLKPGGLFAVEI-GYDQSQAVEALFR---AAGATEVRTVKDLSTHDRVVLGVKN 283

Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif.

Caulobacter crescentus (strain ATCC 19089 / CB15) (taxid: 190650)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 1

EC: 6

>sp|Q7VDL7|PRMC_PROMA Release factor glutamine methyltransferase OS=Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) GN=prmC PE=3 SV=1

 Score =  111 bits (277), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 83/235 (35%), Positives = 118/235 (50%), Gaps = 11/235 (4%)

Query: 138 LWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGL-RD 196
           +W + +  + P Q+LVG   WRD  L V     IPR ETE+++D+    L + + GL + 
Sbjct: 67  IWMRHLSDQIPLQHLVGKCPWRDFELKVNSSALIPRQETEILIDIA---LKKVDAGLMKY 123

Query: 197 GFWVDLGTGSGAIAIGIARVLGS-KGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGS 255
           G W DLGTGSGA+A+ +AR L   +G   A D    A A+A  N         + +  G 
Sbjct: 124 GRWADLGTGSGALAVALARALPLWEGH--AADCCNDALALAESNINTLTENANVSLHLGD 181

Query: 256 WFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGT 315
           W+  LK   G    VV+NPPYIP   +S L   V  HEP LAL GG DG+D    +  G 
Sbjct: 182 WWEPLKPWWGNFDLVVANPPYIPKTHLSELDPVVRDHEPILALSGGDDGMDSCRKVIKGA 241

Query: 316 ASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFR 370
              L+ GG+   E N ++  + L   +++     F  V   +D  G++RF    R
Sbjct: 242 MKGLRSGGWLLLEHNFDQSEQALNLMVDS----GFLEVDFENDLEGVRRFGLALR 292

Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif.

Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) (taxid: 167539)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 1

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	371
224073134	360	predicted protein [Populus trichocarpa]	0.881	0.908	0.704	1e-135
255566573	354	n6-DNA-methyltransferase, putative [Rici	0.881	0.923	0.689	1e-133
449466616	360	PREDICTED: release factor glutamine meth	0.913	0.941	0.629	1e-129
225462209	356	PREDICTED: protein methyltransferase hem	0.959	1.0	0.633	1e-129
356525752	361	PREDICTED: protein methyltransferase hem	0.970	0.997	0.631	1e-128
363807000	364	uncharacterized protein LOC100796269 [Gl	0.981	1.0	0.622	1e-126
358348140	403	Protein hemK [Medicago truncatula] gi|35	0.867	0.799	0.581	1e-119
297797429	365	methylase family protein [Arabidopsis ly	0.902	0.917	0.617	1e-118
15237618	377	RNA methyltransferase family protein [Ar	0.902	0.888	0.608	1e-117
21553723	377	unknown [Arabidopsis thaliana]	0.902	0.888	0.6	1e-115

>gi|224073134|ref|XP_002303988.1| predicted protein [Populus trichocarpa] gi|222841420|gb|EEE78967.1| predicted protein [Populus trichocarpa]

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 236/335 (70%), Positives = 276/335 (82%), Gaps = 8/335 (2%)

Query: 44  STPKPKTPLFLKPPKYSATLSDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWL 103
           +T KPK PLFL+PP YS T SDL+KWH WAK LASSV S+F +SDNGPDS++L RELNWL
Sbjct: 27  TTIKPKIPLFLRPPTYSVTSSDLQKWHGWAKGLASSVGSSFVESDNGPDSTLLCRELNWL 86

Query: 104 VEDSLEDPSLIPQLGFQ-------NNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCE 156
           +EDSLE+ S      F        +  ++V LRI LD+LY LWKQRIE+R+PFQY+VGCE
Sbjct: 87  LEDSLENRSSSSCFSFAACKYDTFDGIENVMLRISLDDLYQLWKQRIEERRPFQYIVGCE 146

Query: 157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARV 216
           HWRDLVLSV+EGV IPRPETEL+VDLVSD  V +N  L  G W D+GTGSGAIAIGI+++
Sbjct: 147 HWRDLVLSVQEGVLIPRPETELIVDLVSDA-VSNNQELGQGLWADVGTGSGAIAIGISKI 205

Query: 217 LGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPY 276
           L S G +IA DL+P+A +VA FN QRYGLQ + E+RQGSWF  LKDVEG+L G+VSNPPY
Sbjct: 206 LRSYGRVIATDLSPVAVSVAMFNVQRYGLQHVTEVRQGSWFEPLKDVEGQLVGIVSNPPY 265

Query: 277 IPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCK 336
           IPSD+ISGLQ EVG+HEPRLALDGG  G+DYLLHLCNG A+MLKPGGFFAFETNGEKQCK
Sbjct: 266 IPSDNISGLQAEVGRHEPRLALDGGASGIDYLLHLCNGAAAMLKPGGFFAFETNGEKQCK 325

Query: 337 FLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFRQ 371
           FL +Y++ND A SFCN++IVSDFAGIQRFVTGFRQ
Sbjct: 326 FLVDYMQNDIAGSFCNLNIVSDFAGIQRFVTGFRQ 360

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566573|ref|XP_002524271.1| n6-DNA-methyltransferase, putative [Ricinus communis] gi|223536462|gb|EEF38110.1| n6-DNA-methyltransferase, putative [Ricinus communis]

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 226/328 (68%), Positives = 274/328 (83%), Gaps = 1/328 (0%)

Query: 44  STPKPKTPLFLKPPKYSATLSDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWL 103
           S+ K + PLFL+PP YS +LS+L KW  WAK LASSV S+F + DNGPDS++L REL WL
Sbjct: 28  SSLKIQNPLFLRPPVYSTSLSELNKWQQWAKHLASSVGSSFVNLDNGPDSTLLCRELKWL 87

Query: 104 VEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVL 163
           +EDSLED SLIPQL  QNN ++V+LR  LDELY LW+QRIE+RKPFQY+VGCEHWRD VL
Sbjct: 88  IEDSLEDHSLIPQLCIQNNFRNVKLRASLDELYSLWRQRIEERKPFQYIVGCEHWRDFVL 147

Query: 164 SVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSI 223
           SV+EGV IPRPETEL++DLV    V +N+ L +G W DLGTGSGA+AIGIA++LG +G +
Sbjct: 148 SVQEGVLIPRPETELIIDLVKGA-VLNNEELSEGLWADLGTGSGALAIGIAKILGPQGRV 206

Query: 224 IAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDIS 283
           IA DL+P+AA+VA +N QRY LQ ++E+R+GSWF  L DVEGKL+GVVSNPPYIPSDDIS
Sbjct: 207 IATDLSPVAASVATYNVQRYDLQGMVEVRKGSWFEPLNDVEGKLAGVVSNPPYIPSDDIS 266

Query: 284 GLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLE 343
           GLQ EVG+HEPR+ALDGG+ G+D LLHL NG AS+LKPGGFFAFETNGEKQCKFL +++E
Sbjct: 267 GLQAEVGRHEPRIALDGGISGMDDLLHLTNGAASILKPGGFFAFETNGEKQCKFLLHHME 326

Query: 344 NDSACSFCNVSIVSDFAGIQRFVTGFRQ 371
           N+ +  F NV+IVSD AGIQRF+TGF Q
Sbjct: 327 NECSGCFFNVNIVSDCAGIQRFLTGFHQ 354

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449466616|ref|XP_004151022.1| PREDICTED: release factor glutamine methyltransferase-like [Cucumis sativus] gi|449526004|ref|XP_004170005.1| PREDICTED: release factor glutamine methyltransferase-like [Cucumis sativus]

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 223/354 (62%), Positives = 271/354 (76%), Gaps = 15/354 (4%)

Query: 26  RAILNQPFSSSSSSSSHSSTPKPKTPLFLKPPKYSATLSDLKKWHNWAKALASSVRSTFA 85
           RA L  P  + S     SS+  P+ PLFL+PP YS TL D  KWHNWAK L  SV S+F 
Sbjct: 7   RAYLVAPHRAKSIRPICSSSLNPQIPLFLRPPNYSVTLKDFHKWHNWAKILNCSVGSSFV 66

Query: 86  DSDNGPDSSILFRELNWLVEDSLEDPSLI----------PQLGFQNNSQSVRLRIGLDEL 135
           D+DNGPDS++L REL WLV+D++ED SL           P+LG +N    VRL++G++EL
Sbjct: 67  DTDNGPDSTLLHRELKWLVQDAVEDKSLSSELENEIEQNPELGLRN----VRLKVGIEEL 122

Query: 136 YGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLR 195
           Y LWKQRI +R+PFQY+VGCEHWRDL+LSVEEGV IPRPETE++VDLV  V V DN+ LR
Sbjct: 123 YRLWKQRIHERRPFQYIVGCEHWRDLILSVEEGVLIPRPETEVLVDLVEKV-VSDNEALR 181

Query: 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGS 255
           +G WVDLGTGSGAIAIGI R+L  +G +IA DL+ +A AVA +N QRYGLQD+IE+RQGS
Sbjct: 182 EGLWVDLGTGSGAIAIGICRILEGRGRVIATDLSSIALAVAGYNVQRYGLQDLIELRQGS 241

Query: 256 WFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGT 315
           W+  L+DV+GKLSG++SNPPYIPSD+I GLQ EVGKHEPR+ALDGG +G+D L+HLC+  
Sbjct: 242 WYEPLQDVQGKLSGIISNPPYIPSDNIFGLQAEVGKHEPRVALDGGTNGMDELIHLCDEA 301

Query: 316 ASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGF 369
             MLK GGF AFETNGE QCK L NY+EN+    FCN+ IVSDFA I RF+TGF
Sbjct: 302 TVMLKLGGFLAFETNGEDQCKHLVNYMENNHKGKFCNLKIVSDFASIPRFITGF 355

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462209|ref|XP_002269180.1| PREDICTED: protein methyltransferase hemK homolog [Vitis vinifera]

 Score =  466 bits (1198), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 235/371 (63%), Positives = 287/371 (77%), Gaps = 15/371 (4%)

Query: 1   MRVSLTRACRFYTSPITPKPSFFSPRAILNQPFSSSSSSSSHSSTPKPKTPLFLKPPKYS 60
           M++S+ RAC  ++   +P  S       L++P S  SS  S S   KP+ PLFL+PP +S
Sbjct: 1   MKLSIPRACGSWSK--SPPVS-----TTLHKPISFYSSIPSSSPL-KPQVPLFLRPPIHS 52

Query: 61  ATLSDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQ 120
           ATLSDL+KWH+WAK L          SD+ PD ++L REL WL+ED+LE  S +PQ+G  
Sbjct: 53  ATLSDLQKWHHWAKTLP------VPHSDDPPDPTLLRRELKWLLEDALEVHSSVPQMGSH 106

Query: 121 NNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMV 180
           ++ + ++LR  L++LY +W+QRIE+R+PFQY+VGCEHWRDLVLSV++GV IPRPETE+ V
Sbjct: 107 SDDRPIKLRTSLEQLYSVWRQRIEERRPFQYVVGCEHWRDLVLSVQDGVLIPRPETEVFV 166

Query: 181 DLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA 240
           DLV DV+ ++ D L  G W DLGTGSGAIAIGI R+LG +G +IA DL+P+A +VA+FN 
Sbjct: 167 DLVGDVVTQNGD-LTQGLWADLGTGSGAIAIGIGRILGPRGRVIATDLSPVAVSVASFNV 225

Query: 241 QRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDG 300
           QRY LQDIIEIRQGSWF  LKDVEGKLSG+VSNPPYIPSD ISGLQ EVG HEPRLALDG
Sbjct: 226 QRYSLQDIIEIRQGSWFEPLKDVEGKLSGLVSNPPYIPSDHISGLQPEVGWHEPRLALDG 285

Query: 301 GVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFA 360
           GVDG+D LLHLCNG ASMLKPGGFF FETNGEKQCKFL +Y+EN+S  +F +V IV DFA
Sbjct: 286 GVDGIDALLHLCNGAASMLKPGGFFIFETNGEKQCKFLVDYMENESKGNFYDVKIVPDFA 345

Query: 361 GIQRFVTGFRQ 371
           GIQRFVTGF  
Sbjct: 346 GIQRFVTGFHH 356

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525752|ref|XP_003531487.1| PREDICTED: protein methyltransferase hemK homolog [Glycine max]

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 235/372 (63%), Positives = 289/372 (77%), Gaps = 12/372 (3%)

Query: 1   MRVSLTRACRFYTSPITPKPSFFSPRAILNQPFSSSSSSSSHSSTPKPKTPLFLKPPKYS 60
           M ++L+   R Y+ P   K S FS    L++PF SS+ SS  +   KP+ PLFL+PP YS
Sbjct: 1   MNLTLSSVYRPYSFPTLLKSSSFS---TLSRPFCSSALSSPPTCV-KPQVPLFLRPPIYS 56

Query: 61  ATLSDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQ 120
             L +LKKWH+WAK +A S+ STF  SDNG DSSILFRE+ WL+ED++ED S+I      
Sbjct: 57  TKLCELKKWHDWAKGVAFSIGSTFVHSDNGRDSSILFREMKWLMEDAVEDHSMIV----- 111

Query: 121 NNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMV 180
            + + V++RIG+DELY LWKQRI +R+PFQY+VGCEHWRDLVLSV+EGV IPRPETEL+V
Sbjct: 112 -DDERVKMRIGIDELYCLWKQRIHERRPFQYVVGCEHWRDLVLSVQEGVLIPRPETELIV 170

Query: 181 DLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGS-IIAVDLNPLAAAVAAFN 239
           D V DV V +N+ L+ G W DLGTGSGA+AIGI RVL S+G  ++A DL+P+A AVAA+N
Sbjct: 171 DFVYDV-VSENEDLKSGVWADLGTGSGALAIGIGRVLRSEGGRVVATDLSPVAVAVAAYN 229

Query: 240 AQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALD 299
            QRY LQD IE+R+GSWF  LKD+EGKL G+VSNPPYIPS DISGLQ EVG+HEPR+ALD
Sbjct: 230 VQRYCLQDKIELREGSWFEPLKDMEGKLVGLVSNPPYIPSKDISGLQAEVGRHEPRVALD 289

Query: 300 GGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDF 359
           GG DG+D LLHLC+G   MLKPGGFFAFETNGE QC+ L +Y+EN+ + SFCN+ I +DF
Sbjct: 290 GGTDGMDALLHLCDGAGLMLKPGGFFAFETNGEHQCRALVDYMENNRSGSFCNLEIRADF 349

Query: 360 AGIQRFVTGFRQ 371
           AGIQRFV GF Q
Sbjct: 350 AGIQRFVMGFHQ 361

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807000|ref|NP_001242318.1| uncharacterized protein LOC100796269 [Glycine max] gi|255645193|gb|ACU23094.1| unknown [Glycine max]

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 231/371 (62%), Positives = 287/371 (77%), Gaps = 7/371 (1%)

Query: 1   MRVSLTRACRFYTSPITPKPSFFSPRAILNQPFSSSSSSSSHSSTPKPKTPLFLKPPKYS 60
           MR++L+   R Y+ P   K S FS    L +PF SS  SSS +   KP+ PLFL+ P YS
Sbjct: 1   MRLTLSSVYRPYSFPTLLKSSSFS---TLCRPFCSSVLSSSPTCV-KPQVPLFLRQPIYS 56

Query: 61  ATLSDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQ 120
             L +LKKWH+WAK +A S+ STF DSDNGPDSS+L REL WL+ED++ED S+I  +   
Sbjct: 57  TKLCELKKWHDWAKGVAFSIGSTFVDSDNGPDSSLLCRELKWLMEDAVEDHSMI--VKDD 114

Query: 121 NNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMV 180
           ++ + V++R+G++ELY LWKQR+++R+PFQY+VGCEHWRDLVLSV+EGV IPRPETEL+V
Sbjct: 115 DSDERVKMRVGIEELYCLWKQRVQERRPFQYVVGCEHWRDLVLSVQEGVLIPRPETELLV 174

Query: 181 DLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA 240
           D V DV V +N+ L+ G W DLGTGSGA+AIGI  VLGS+G +IA DL+P+A AVAA+N 
Sbjct: 175 DFVDDV-VSENEDLKRGVWADLGTGSGALAIGIGGVLGSEGRVIATDLSPVAVAVAAYNV 233

Query: 241 QRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDG 300
           Q Y  QD IE+R+GSWF  LKD+EG L+G+VSNPPYIPS DISGLQ EVG+HEPR+ALDG
Sbjct: 234 QGYCFQDKIELREGSWFEPLKDMEGMLAGLVSNPPYIPSKDISGLQAEVGRHEPRVALDG 293

Query: 301 GVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFA 360
           G DG+D LLHLC+G A MLKP GF AFETNGE+QC+ L +Y+EN    SFCN+ I SDFA
Sbjct: 294 GTDGMDALLHLCDGAALMLKPAGFSAFETNGEQQCRALVDYMENYRNGSFCNLEIRSDFA 353

Query: 361 GIQRFVTGFRQ 371
           GI RFV GF Q
Sbjct: 354 GILRFVIGFHQ 364

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358348140|ref|XP_003638107.1| Protein hemK [Medicago truncatula] gi|355504042|gb|AES85245.1| Protein hemK [Medicago truncatula]

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 213/366 (58%), Positives = 265/366 (72%), Gaps = 44/366 (12%)

Query: 47  KPKTPLFLKPPKYSATLSDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVED 106
           KP+ P+FL+PP YS  L+DLKKWHNWAK +A S+ S+F  SDNGPDS+IL REL W +ED
Sbjct: 41  KPQVPIFLRPPIYSTKLNDLKKWHNWAKNIAFSIGSSFVQSDNGPDSTILCRELKWFIED 100

Query: 107 SLEDP-SLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSV 165
            +E+  SL  Q+G  ++++ V++R  ++ELY LWKQRIE+RKPFQY+VGCEHW+DLVLSV
Sbjct: 101 VVENHHSLFSQVG--DDNEKVKMRADIEELYCLWKQRIEERKPFQYIVGCEHWKDLVLSV 158

Query: 166 EEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIA 225
           +EGV IPRPETEL+VDLVSDV V  N+GL+ G W DLGTGSGA+AIGI RVLG  G +I 
Sbjct: 159 QEGVLIPRPETELIVDLVSDV-VSKNEGLKRGVWADLGTGSGALAIGIGRVLGDGGKVIG 217

Query: 226 VDLNPLAAAVAAFNAQRYG----------------------------------------L 245
            DL+P+A AVA +N QRY                                         L
Sbjct: 218 SDLSPVAVAVAGYNVQRYSLQVRNSSFQLPWFTFSFIVQSKLYMSILYLETCSTYVNHHL 277

Query: 246 QDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGL 305
           QD IE+R+GSW   LKD+EGKL+G+VSNPPYIPS +I  LQ EVGKHEPR+ALDGG+DG+
Sbjct: 278 QDKIELREGSWLEPLKDMEGKLAGLVSNPPYIPSKEIPVLQAEVGKHEPRVALDGGIDGM 337

Query: 306 DYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRF 365
           D LLHLC+G   MLKPGGFFAFETNGEKQC+ L +Y++++ + S CN+ I +DFAGIQRF
Sbjct: 338 DALLHLCDGADLMLKPGGFFAFETNGEKQCRELVDYMKSNKSASLCNLEIFADFAGIQRF 397

Query: 366 VTGFRQ 371
           V GF +
Sbjct: 398 VIGFHR 403

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797429|ref|XP_002866599.1| methylase family protein [Arabidopsis lyrata subsp. lyrata] gi|297312434|gb|EFH42858.1| methylase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/340 (61%), Positives = 265/340 (77%), Gaps = 5/340 (1%)

Query: 35  SSSSSSSHSSTPKPKTPLFLKPPKYSATLSDLKKWHNWAKALASSVRSTFADSDNGPDSS 94
           + SS+ ++S +  PKTPLFL+ P ++ +LS++ KWH+WAK LASSV  +  +S++  DS 
Sbjct: 26  AKSSTETNSLSITPKTPLFLRTPSHATSLSEVWKWHDWAKDLASSVEESSTNSEDVLDSV 85

Query: 95  ILFRELNWLVEDSL-EDPSLIPQLG--FQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQY 151
           IL REL WL+EDS+ +DP +I        N  ++V+LR  L+ELY LW+QRIEKR+PFQY
Sbjct: 86  ILHRELKWLIEDSIVDDPLVILHRSEIADNGEKNVKLRASLEELYDLWRQRIEKRRPFQY 145

Query: 152 LVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAI 211
           +VGCE+WRDLVL VEEGV IPRPETEL+VD+V +++ RD +  + GFW DLGTGSGAIAI
Sbjct: 146 VVGCEYWRDLVLCVEEGVLIPRPETELIVDMVEELVTRD-EWFKKGFWADLGTGSGAIAI 204

Query: 212 GIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271
           GIA+VLGS+G +IA DL+P+A AVA  N QRYGL+ +IE+R+GSWF  LK +EGKL G+V
Sbjct: 205 GIAKVLGSRGRVIATDLSPVAVAVAGKNVQRYGLEGMIEVREGSWFEPLKGLEGKLVGLV 264

Query: 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG 331
           SNPPYIPSDDI GLQ EVGKHEP+LALDGG+DG D LLHLC G + ML+ GGFF FETNG
Sbjct: 265 SNPPYIPSDDIPGLQAEVGKHEPKLALDGGIDGTDSLLHLCYGASQMLQRGGFFVFETNG 324

Query: 332 EKQCKFLKNY-LENDSACSFCNVSIVSDFAGIQRFVTGFR 370
           EKQ K + +Y + ND    F ++ IVSDFAGI RFVTGFR
Sbjct: 325 EKQSKMIVDYMMSNDLKDCFSDLKIVSDFAGINRFVTGFR 364

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237618|ref|NP_201220.1| RNA methyltransferase family protein [Arabidopsis thaliana] gi|10176963|dbj|BAB10283.1| unnamed protein product [Arabidopsis thaliana] gi|15451004|gb|AAK96773.1| Unknown protein [Arabidopsis thaliana] gi|30725624|gb|AAP37834.1| At5g64156 [Arabidopsis thaliana] gi|332010464|gb|AED97847.1| RNA methyltransferase family protein [Arabidopsis thaliana]

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 207/340 (60%), Positives = 262/340 (77%), Gaps = 5/340 (1%)

Query: 35  SSSSSSSHSSTPKPKTPLFLKPPKYSATLSDLKKWHNWAKALASSVRSTFADSDNGPDSS 94
           S SS  + S +  PKTPL+L+ P ++ +LS++ KWH+WAK LASSV  +  +S++  DS 
Sbjct: 38  SKSSRPTKSLSITPKTPLYLRTPSHATSLSEVWKWHDWAKDLASSVEESSKNSEDTLDSV 97

Query: 95  ILFRELNWLVEDSL-EDPSLIPQLG--FQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQY 151
           IL REL WL+EDS+ +DP +I        N  ++V+LR  L+ELY LW+QRIEKR+PFQY
Sbjct: 98  ILHRELKWLIEDSIVDDPLVILHRSEIADNGEKNVKLRASLEELYDLWRQRIEKRRPFQY 157

Query: 152 LVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAI 211
           +VGCEHWRDLVL VEEGV IPRPETEL+VD+V +++ RD +  +   W DLGTGSGAIAI
Sbjct: 158 VVGCEHWRDLVLCVEEGVLIPRPETELIVDMVEELVTRD-EWFKKDIWADLGTGSGAIAI 216

Query: 212 GIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271
           GIA+VLGS+G +IA DL+P+A AVA  N QRY L+ +IE+R+GSWF  LKD+EGKL G+V
Sbjct: 217 GIAKVLGSRGRVIATDLSPVAIAVAGHNVQRYSLEGMIEVREGSWFEPLKDLEGKLVGLV 276

Query: 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG 331
           SNPPYIPSDDI GLQ EVG+HEP+LALDGG+DG D L HLC+G + ML+PGGFF FETNG
Sbjct: 277 SNPPYIPSDDIPGLQAEVGRHEPKLALDGGIDGTDSLFHLCHGASRMLQPGGFFVFETNG 336

Query: 332 EKQCKFLKNY-LENDSACSFCNVSIVSDFAGIQRFVTGFR 370
           EKQ K + +Y + +D    F ++ IVSDFAGI RFVTGFR
Sbjct: 337 EKQSKMIVDYMMTSDLKDCFSDLKIVSDFAGINRFVTGFR 376

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553723|gb|AAM62816.1| unknown [Arabidopsis thaliana]

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 204/340 (60%), Positives = 260/340 (76%), Gaps = 5/340 (1%)

Query: 35  SSSSSSSHSSTPKPKTPLFLKPPKYSATLSDLKKWHNWAKALASSVRSTFADSDNGPDSS 94
           S SS  + S +  PKTPL+L+ P ++ +LS++ KWH+WAK LASSV  +  +S++  DS 
Sbjct: 38  SKSSRPTKSLSITPKTPLYLRTPSHATSLSEVWKWHDWAKDLASSVEESSKNSEDTLDSV 97

Query: 95  ILFRELNWLVEDSL-EDPSLIPQLG--FQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQY 151
           IL REL WL+EDS+ +DP +I        N  ++V+LR  L+ELY LW+QRIEKR+PF Y
Sbjct: 98  ILHRELKWLIEDSIVDDPLVILHRSEIADNGKKNVKLRASLEELYDLWRQRIEKRRPFHY 157

Query: 152 LVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAI 211
           +VGCEHWRDLVL VEEGV IPRPETEL+VD+V +++ RD +  + G   +LGTGSGAIAI
Sbjct: 158 VVGCEHWRDLVLCVEEGVLIPRPETELIVDMVEELVTRD-EWFKKGILANLGTGSGAIAI 216

Query: 212 GIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271
           GIA+VLGS+G +IA DL+P+A AVA  N  RY L+ +IE+R+GSWF  LKD+EGKL G+V
Sbjct: 217 GIAKVLGSRGRVIATDLSPVAIAVAGHNVHRYSLEGMIEVREGSWFEPLKDLEGKLVGLV 276

Query: 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG 331
           SNPPYIPSDDI GLQ EVG+HEP+LALDGG+DG D L HLC+G + ML+PGGFF FETNG
Sbjct: 277 SNPPYIPSDDIPGLQAEVGRHEPKLALDGGIDGTDSLFHLCHGASRMLQPGGFFVFETNG 336

Query: 332 EKQCKFLKNY-LENDSACSFCNVSIVSDFAGIQRFVTGFR 370
           EKQ K + +Y + +D    F ++ IVSDFAGI RFVTGFR
Sbjct: 337 EKQSKMIVDYMMTSDLKDCFSDLKIVSDFAGINRFVTGFR 376

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	371
TAIR|locus:2164396	377	AT5G64150 [Arabidopsis thalian	0.838	0.824	0.522	6.2e-85
TIGR_CMR|GSU_3103	284	GSU_3103 "modification methyla	0.582	0.760	0.271	3.5e-11
UNIPROTKB|Q10602	304	prmC "Release factor glutamine	0.285	0.348	0.306	7.1e-11
TIGR_CMR|VC_2178	286	VC_2178 "hemK protein" [Vibrio	0.563	0.730	0.256	2.5e-09
ZFIN|ZDB-GENE-050208-185	342	hemk1 "HemK methyltransferase	0.420	0.456	0.324	6e-09
TIGR_CMR|BA_5571	283	BA_5571 "modification methylas	0.563	0.738	0.270	3.9e-08
UNIPROTKB|Q83AD8	277	prmC "Release factor glutamine	0.579	0.776	0.251	4.7e-08
TIGR_CMR|CBU_1964	277	CBU_1964 "protein methyltransf	0.579	0.776	0.251	4.7e-08
UNIPROTKB|Q8EAR4	286	prmC "Release factor glutamine	0.579	0.751	0.236	1.6e-07
TIGR_CMR|SO_3832	286	SO_3832 "hemK family protein"	0.579	0.751	0.236	1.6e-07

TAIR|locus:2164396 AT5G64150 [Arabidopsis thaliana (taxid:3702)]

 Score = 850 (304.3 bits), Expect = 6.2e-85, P = 6.2e-85
 Identities = 165/316 (52%), Positives = 213/316 (67%)

Query:    59 YSATLSDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSL-EDPSLIPQL 117
             ++ +LS++ KWH+WAK LASSV  +  +S++  DS IL REL WL+EDS+ +DP +I   
Sbjct:    62 HATSLSEVWKWHDWAKDLASSVEESSKNSEDTLDSVILHRELKWLIEDSIVDDPLVILHR 121

Query:   118 G--FQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPE 175
                  N  ++V+LR  L+ELY LW+QRIEKR+PFQY+VGCEHWRDLVL VEEGV IPRPE
Sbjct:   122 SEIADNGEKNVKLRASLEELYDLWRQRIEKRRPFQYVVGCEHWRDLVLCVEEGVLIPRPE 181

Query:   176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTXXXXXXXXXXRVLGSKGSIIXXXXXXXXXXX 235
             TEL+VD+V +++ RD +  +   W DLGT          +VLGS+G +I           
Sbjct:   182 TELIVDMVEELVTRD-EWFKKDIWADLGTGSGAIAIGIAKVLGSRGRVIATDLSPVAIAV 240

Query:   236 XXXXXQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPR 295
                  QRY L+ +IE+R+GSWF  LKD+EGKL G+VSNPPYIPSDDI GLQ EVG+HEP+
Sbjct:   241 AGHNVQRYSLEGMIEVREGSWFEPLKDLEGKLVGLVSNPPYIPSDDIPGLQAEVGRHEPK 300

Query:   296 XXXXXXXXXXXXXXXXCNGTASMLKPGGFFAFETNGEKQCKFLKNYL-ENDSACSFCNVS 354
                             C+G + ML+PGGFF FETNGEKQ K + +Y+  +D    F ++ 
Sbjct:   301 LALDGGIDGTDSLFHLCHGASRMLQPGGFFVFETNGEKQSKMIVDYMMTSDLKDCFSDLK 360

Query:   355 IVSDFAGIQRFVTGFR 370
             IVSDFAGI RFVTGFR
Sbjct:   361 IVSDFAGINRFVTGFR 376

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=ISS

GO:0006479 "protein methylation" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008276 "protein methyltransferase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0032259 "methylation" evidence=IEA

GO:0006783 "heme biosynthetic process" evidence=RCA

TIGR_CMR|GSU_3103 GSU_3103 "modification methylase, HemK family" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 173 (66.0 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 63/232 (27%), Positives = 94/232 (40%)

Query:   137 GLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRD 196
             GL  +R  KR+P QY++G + +  L   V   V IPR +TE++V+   + L R       
Sbjct:    66 GLVARRA-KREPLQYILGTQEFCGLDFVVTPSVLIPRHDTEVIVE---EALRRAPHAAAV 121

Query:   197 GFWVDLGTXXXXXXXXXXRVLGSKGSIIXXXXXXXXXXXXXXXXQRYGLQDIIEIRQGSW 256
                +D+G           + L     ++                +R+G +  + + +GS 
Sbjct:   122 ---LDIGVGSGCIAVALAKQL-PHAQVVGVEQSPGAIALAQRNAERHGAR--VTLFEGSL 175

Query:   257 FGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRXXXXXXXXXXXXXXXXCNGTA 316
             F  L D    L  +VSNPPYIP+ D+  LQ EV ++EPR                     
Sbjct:   176 FEPLGDQRFDL--IVSNPPYIPTADLEALQPEVREYEPRAALDGGSDGLDFYRLIVPAAP 233

Query:   317 SMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTG 368
               L PGG+   E  G  Q + +       S   FC+     D  GI R V G
Sbjct:   234 EYLNPGGWLMVEL-GIGQAETVLGMF---SRTGFCDCFTAQDPNGIDRVVGG 281

GO:0006306 "DNA methylation" evidence=ISS

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

GO:0009007 "site-specific DNA-methyltransferase (adenine-specific) activity" evidence=ISS

UNIPROTKB|Q10602 prmC "Release factor glutamine methyltransferase" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 119 (46.9 bits), Expect = 7.1e-11, Sum P(2) = 7.1e-11
 Identities = 34/111 (30%), Positives = 48/111 (43%)

Query:   260 LKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRXXXXXXXXXXXXXXXXCNGTASML 319
             L +++G++  +VSNPPYIP  D + L+ EV +H+P                        L
Sbjct:   175 LPELDGQVDLMVSNPPYIP--DAAVLEPEVAQHDPHHALFGGPDGMTVISAVVGLAGRWL 232

Query:   320 KPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFR 370
             +PGG FA E +       +       S   F +V    D AG  RFVT  R
Sbjct:   233 RPGGLFAVEHDDTTSSSTVDLV---SSTKLFVDVQARKDLAGRPRFVTAMR 280

GO:0040007 "growth" evidence=IMP

TIGR_CMR|VC_2178 VC_2178 "hemK protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 158 (60.7 bits), Expect = 2.5e-09, P = 2.5e-09
 Identities = 57/222 (25%), Positives = 85/222 (38%)

Query:   147 KPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTXX 206
             +P  Y++G   +  L L V     IPRP+TE +V+L  D        L DG  +DLGT  
Sbjct:    70 EPMAYILGEREFWSLPLKVSPSTLIPRPDTERLVELALD-----KAALIDGELLDLGTGT 124

Query:   207 XXXXXXXXRVLGSKGSIIXXXXXXXXXXXXXXXXQRYGLQDIIEIRQGSWFGKLKDVEGK 266
                       L ++  +                  R  + +  +  QGSWF  L D   K
Sbjct:   125 GAIALALASELPTR-QVTGIDLRPEAAELARENATRLAIHNA-QFFQGSWFSPLADGT-K 181

Query:   267 LSGVVSNPPYIPSDDISGLQVEVGKHEPRXXXXXXXXXXXXXXXXCNGTASMLKPGGFFA 326
              + +VSNPPYI  +D   L +   + EP+                       L  GG+  
Sbjct:   182 FALIVSNPPYIEEND-PHLSLGDVRFEPKSALVAAENGLADIRHISTHAPHFLLDGGWLL 240

Query:   327 FETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTG 368
             FE +G  Q   ++  L +     + N+    D+AG  R   G
Sbjct:   241 FE-HGYDQGVAVRTILRD---LGYQNIITEQDYAGHDRVTLG 278

GO:0006306 "DNA methylation" evidence=ISS

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

GO:0009007 "site-specific DNA-methyltransferase (adenine-specific) activity" evidence=ISS

ZFIN|ZDB-GENE-050208-185 hemk1 "HemK methyltransferase family member 1" [Danio rerio (taxid:7955)]

 Score = 157 (60.3 bits), Expect = 6.0e-09, P = 6.0e-09
 Identities = 58/179 (32%), Positives = 80/179 (44%)

Query:   124 QSVRLRIGLD--ELYGLWKQRIEK--RKPFQYLVGCEHW--RDLVLSVEEGVFIPRPETE 177
             Q  RLR  L   E   +WK   ++  R P QY++  E W  RDL L ++  VFIPRPETE
Sbjct:    90 QKKRLRDTLTDKERETVWKLCSKRLTRMPVQYVI--EEWDFRDLTLKMKPPVFIPRPETE 147

Query:   178 LMVDLVSDVLVRDNDGLRDGFW-VDLGTXXXXXXXXXXRVLGSKGSIIXXXXXXXXXXXX 236
              +V LV    + D + +R  F  +++G           R L     +             
Sbjct:   148 ELVGLV----LEDFESIRGDFHGLEVGCGSGAISLSLLRSLPQL-RVFALDQSQDAVCLT 202

Query:   237 XXXXQRYGLQDIIEIRQGSWFGKLKDVEGKLSG------VVSNPPYIPSDDISGLQVEV 289
                  R GLQD +E+        +KD +  LS       +VSNPPYI S D+  LQ E+
Sbjct:   203 MENANRLGLQDRLEVHH---LDVVKDADVILSKCNPVDFIVSNPPYILSQDMEALQTEI 258

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008276 "protein methyltransferase activity" evidence=IEA

GO:0006479 "protein methylation" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

TIGR_CMR|BA_5571 BA_5571 "modification methylase, HemK family" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 148 (57.2 bits), Expect = 3.9e-08, P = 3.9e-08
 Identities = 60/222 (27%), Positives = 83/222 (37%)

Query:   148 PFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDG--FWVDLGTX 205
             P QY++G E +      V E V IPRPETE   +L+  VL R      D      D+GT 
Sbjct:    67 PIQYMIGHEMFYGRSFFVNEEVLIPRPETE---ELIVGVLERIERHFGDEKLHVADIGTG 123

Query:   206 XXXXXXXXXRVLGSKG-SIIXXXXXXXXXXXXXXXXQRYGLQDIIEIRQGSWFGKLKDVE 264
                        L +K   +                 +  G +  +    G       +  
Sbjct:   124 SGAISITLA--LENKNLHVYTVDIAQESIEVAKENAKTLGAE--VTFYHGDLLSPFYETG 179

Query:   265 GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRXXXXXXXXXXXXXXXXCNGTASMLKPGGF 324
              KL  VVSNPPYIP +D  GL   V +HEP+                     ++L+    
Sbjct:   180 QKLDVVVSNPPYIPEEDWRGLSPVVKEHEPKRALVGGEDGLDFYRRFMEELPNVLQKKAI 239

Query:   325 FAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFV 366
              AFE  G  Q + +K  L+   A    +V +V D  G  R V
Sbjct:   240 VAFEI-GVGQGEDVKGLLQQ--AFPHAHVEVVFDINGKDRMV 278

GO:0006306 "DNA methylation" evidence=ISS

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

GO:0009007 "site-specific DNA-methyltransferase (adenine-specific) activity" evidence=ISS

UNIPROTKB|Q83AD8 prmC "Release factor glutamine methyltransferase" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 147 (56.8 bits), Expect = 4.7e-08, P = 4.7e-08
 Identities = 58/231 (25%), Positives = 93/231 (40%)

Query:   140 KQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFW 199
             K+R+ K +P  Y++G + +  L L V   V IPRPETE++V+ +   L +D + LR    
Sbjct:    62 KRRL-KGEPIAYILGQKEFWSLNLKVTPDVLIPRPETEMLVEWILKNLPKD-EKLRIA-- 117

Query:   200 VDLGTXXXXXXXXXXRVLGSKGSIIXXXXXXXXXXXXXXXXQRYGLQDIIEIRQGSWFGK 259
              DLGT           V     +I                 +++ +++      G W   
Sbjct:   118 -DLGTGSGAVALAIA-VERPHWTIDATDNSQAALKIAEINAKQHEIKNC-NFYHGEWCQA 174

Query:   260 LKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRXXXXXXXXXXXXXXXXCNGTASML 319
             L   +     +V NPPYIP  D    Q+   KHEPR                 +   S L
Sbjct:   175 LPRRD--YHAIVGNPPYIPDKDQHLQQL---KHEPREALAAGSDGLSAIKIIIHEAKSYL 229

Query:   320 KPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFR 370
               GG+   E +G  Q + +   ++ D    +  ++   D AG+ R +   R
Sbjct:   230 VNGGWLLLE-HGYDQAEKIMTLMQADG---YREITDRRDLAGLSRMMVARR 276

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CBU_1964 CBU_1964 "protein methyltransferase HemK" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 147 (56.8 bits), Expect = 4.7e-08, P = 4.7e-08
 Identities = 58/231 (25%), Positives = 93/231 (40%)

Query:   140 KQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFW 199
             K+R+ K +P  Y++G + +  L L V   V IPRPETE++V+ +   L +D + LR    
Sbjct:    62 KRRL-KGEPIAYILGQKEFWSLNLKVTPDVLIPRPETEMLVEWILKNLPKD-EKLRIA-- 117

Query:   200 VDLGTXXXXXXXXXXRVLGSKGSIIXXXXXXXXXXXXXXXXQRYGLQDIIEIRQGSWFGK 259
              DLGT           V     +I                 +++ +++      G W   
Sbjct:   118 -DLGTGSGAVALAIA-VERPHWTIDATDNSQAALKIAEINAKQHEIKNC-NFYHGEWCQA 174

Query:   260 LKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRXXXXXXXXXXXXXXXXCNGTASML 319
             L   +     +V NPPYIP  D    Q+   KHEPR                 +   S L
Sbjct:   175 LPRRD--YHAIVGNPPYIPDKDQHLQQL---KHEPREALAAGSDGLSAIKIIIHEAKSYL 229

Query:   320 KPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFR 370
               GG+   E +G  Q + +   ++ D    +  ++   D AG+ R +   R
Sbjct:   230 VNGGWLLLE-HGYDQAEKIMTLMQADG---YREITDRRDLAGLSRMMVARR 276

GO:0008150 "biological_process" evidence=ND

GO:0008168 "methyltransferase activity" evidence=ISS

UNIPROTKB|Q8EAR4 prmC "Release factor glutamine methyltransferase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 143 (55.4 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 56/237 (23%), Positives = 90/237 (37%)

Query:   139 WK---QRIEKRK---PFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDND 192
             WK   Q +++R+   P  ++VG   +  L   V +   IPRP+TE++V+   ++ +  N 
Sbjct:    57 WKRFQQMVQRRQQGVPVAHIVGEREFWSLPFIVNDTTLIPRPDTEILVESALNLPLESNA 116

Query:   193 GLRDGFWVDLGTXXXXXXXXXXRVLGSKGSIIXXXXXXXXXXXXXXXXQRYGLQ-DIIEI 251
              +     +DLGT           +   + +                   R  L+ + +EI
Sbjct:   117 KV-----LDLGTGTGAIALA---LASERAAWQITAVDKVEDAVALAKANRTNLKLEQVEI 168

Query:   252 RQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRXXXXXXXXXXXXXXXX 311
              Q  WF  +   +  L  +VSNPPYI   D    Q +V + EP+                
Sbjct:   169 LQSDWFSAVTSHDFDL--IVSNPPYIDEADEHLHQGDV-RFEPQSALTAADEGFADLYYI 225

Query:   312 CNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTG 368
                    LKP G+   E   E+  K     +E      + NV+ V DF    R   G
Sbjct:   226 AKTARDYLKPNGYILLEHGFEQAVKLRAKLIE----LGYQNVATVRDFGSNDRCTMG 278

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_3832 SO_3832 "hemK family protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 143 (55.4 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 56/237 (23%), Positives = 90/237 (37%)

Query:   139 WK---QRIEKRK---PFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDND 192
             WK   Q +++R+   P  ++VG   +  L   V +   IPRP+TE++V+   ++ +  N 
Sbjct:    57 WKRFQQMVQRRQQGVPVAHIVGEREFWSLPFIVNDTTLIPRPDTEILVESALNLPLESNA 116

Query:   193 GLRDGFWVDLGTXXXXXXXXXXRVLGSKGSIIXXXXXXXXXXXXXXXXQRYGLQ-DIIEI 251
              +     +DLGT           +   + +                   R  L+ + +EI
Sbjct:   117 KV-----LDLGTGTGAIALA---LASERAAWQITAVDKVEDAVALAKANRTNLKLEQVEI 168

Query:   252 RQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRXXXXXXXXXXXXXXXX 311
              Q  WF  +   +  L  +VSNPPYI   D    Q +V + EP+                
Sbjct:   169 LQSDWFSAVTSHDFDL--IVSNPPYIDEADEHLHQGDV-RFEPQSALTAADEGFADLYYI 225

Query:   312 CNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTG 368
                    LKP G+   E   E+  K     +E      + NV+ V DF    R   G
Sbjct:   226 AKTARDYLKPNGYILLEHGFEQAVKLRAKLIE----LGYQNVATVRDFGSNDRCTMG 278

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	grail3.0136002401	hypothetical protein (360 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pg.C_LG_XIV000547	hypothetical protein (358 aa)	•				•		•		0.822
	eugene3.00140779	hypothetical protein (416 aa)	•				•		•		0.795
	fgenesh4_pg.C_scaffold_2755000002	Predicted protein (247 aa)	•								0.688
	gw1.VI.1832.1	annotation not avaliable (210 aa)	•						•		0.645
	gw1.VI.1271.1	ferrochelatase (EC-4.99.1.1); Catalyzes the ferrous insertion into protoporphyrin IX (By simila [...] (381 aa)	•					•	•		0.616
	gw1.XII.1260.1	hypothetical protein (421 aa)						•	•		0.518
	gw1.VIII.2786.1	hypothetical protein (385 aa)	•				•		•		0.485
	fgenesh4_pg.C_scaffold_18203000001	Predicted protein (261 aa)	•						•		0.479
	fgenesh4_pg.C_LG_IX001310	hypothetical protein (232 aa)	•						•		0.474
	gw1.XIII.621.1	hypothetical protein (398 aa)	•						•		0.403

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	371
PRK09328	275	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-meth	2e-73
TIGR03534	251	TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met	8e-65
COG2890	280	COG2890, HemK, Methylase of polypeptide chain rele	6e-57
TIGR00536	284	TIGR00536, hemK_fam, HemK family putative methylas	6e-55
TIGR03533	284	TIGR03533, L3_gln_methyl, protein-(glutamine-N5) m	5e-32
PRK11805	307	PRK11805, PRK11805, N5-glutamine S-adenosyl-L-meth	6e-29
TIGR03704	251	TIGR03704, PrmC_rel_meth, putative protein-(glutam	2e-28
PRK14966	423	PRK14966, PRK14966, unknown domain/N5-glutamine S-	1e-22
PRK01544	506	PRK01544, PRK01544, bifunctional N5-glutamine S-ad	2e-20
PRK14967	223	PRK14967, PRK14967, putative methyltransferase; Pr	2e-16
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	1e-13
PRK14968	188	PRK14968, PRK14968, putative methyltransferase; Pr	5e-12
COG4123	248	COG4123, COG4123, Predicted O-methyltransferase [G	4e-10
TIGR00537	179	TIGR00537, hemK_rel_arch, HemK-related putative me	3e-09
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	2e-08
PRK00517	250	PRK00517, prmA, ribosomal protein L11 methyltransf	3e-07
pfam06325	294	pfam06325, PrmA, Ribosomal protein L11 methyltrans	4e-07
pfam05175	170	pfam05175, MTS, Methyltransferase small domain	6e-07
pfam01170	172	pfam01170, UPF0020, Putative RNA methylase family	7e-07
TIGR00406	288	TIGR00406, prmA, ribosomal protein L11 methyltrans	7e-07
COG2242	187	COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme	1e-06
COG2519	256	COG2519, GCD14, tRNA(1-methyladenosine) methyltran	2e-06
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	3e-06
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	6e-06
COG2264	300	COG2264, PrmA, Ribosomal protein L11 methylase [Tr	7e-06
COG2263	198	COG2263, COG2263, Predicted RNA methylase [Transla	2e-05
PRK00377	198	PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltr	3e-05
PRK11783	702	PRK11783, rlmL, 23S rRNA m(2)G2445 methyltransfera	8e-05
COG4122	219	COG4122, COG4122, Predicted O-methyltransferase [G	1e-04
TIGR02469	124	TIGR02469, CbiT, precorrin-6Y C5,15-methyltransfer	2e-04
pfam02384	312	pfam02384, N6_Mtase, N-6 DNA Methylase	5e-04
COG0116	381	COG0116, COG0116, Predicted N6-adenine-specific DN	5e-04
COG2813	300	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Trans	0.001
pfam09445	165	pfam09445, Methyltransf_15, RNA cap guanine-N2 met	0.004
PRK13944	205	PRK13944, PRK13944, protein-L-isoaspartate O-methy	0.004

>gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

 Score =  229 bits (586), Expect = 2e-73
 Identities = 96/237 (40%), Positives = 124/237 (52%), Gaps = 13/237 (5%)

Query: 132 LDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDN 191
           L+    L  +R    +P QY++G   +  L   V  GV IPRPETE +V+   + L    
Sbjct: 50  LERFRALVARRA-AGEPLQYILGEAEFWGLDFKVSPGVLIPRPETEELVEWALEAL-LLK 107

Query: 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEI 251
           + LR    +DLGTGSGAIA+ +A+       + AVD++P A AVA  NA+  GL   +E 
Sbjct: 108 EPLR---VLDLGTGSGAIALALAKERPDA-EVTAVDISPEALAVARRNAKH-GLGARVEF 162

Query: 252 RQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHL 311
            QG WF  L    G+   +VSNPPYIP  DI  LQ EV  HEP LAL GG DGLD+   +
Sbjct: 163 LQGDWFEPLPG--GRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRI 220

Query: 312 CNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTG 368
                  LKPGG+   E  G  Q + ++  L    A  F +V    D AG  R V G
Sbjct: 221 IEQAPRYLKPGGWLLLEI-GYDQGEAVRALLA---AAGFADVETRKDLAGRDRVVLG 273

Length = 275

>gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific

 Score =  206 bits (526), Expect = 8e-65
 Identities = 97/237 (40%), Positives = 122/237 (51%), Gaps = 15/237 (6%)

Query: 133 DELYGLWK--QRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRD 190
           +EL        R  K +P  Y++G   +  L   V  GV IPRPETE +V+   + L   
Sbjct: 28  EELARFDALLARRAKGEPVAYILGEREFYGLDFKVSPGVLIPRPETEELVEAALERL--K 85

Query: 191 NDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIE 250
              LR    +DLGTGSGAIA+ +A+       + AVD++P A AVA  NA R GL D +E
Sbjct: 86  KGPLR---VLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGL-DNVE 140

Query: 251 IRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLH 310
             Q  WF  L    GK   +VSNPPYIP  DI  L  EV  HEPRLAL GG DGLD+   
Sbjct: 141 FLQSDWFEPLPG--GKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRR 198

Query: 311 LCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVT 367
           +      +LKPGG+   E  G  Q + ++   E   A  F +V    D AG  R V 
Sbjct: 199 IIAQAPRLLKPGGWLLLEI-GYDQGEAVRALFE---AAGFADVETRKDLAGKDRVVL 251

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251

>gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

 Score =  186 bits (475), Expect = 6e-57
 Identities = 86/232 (37%), Positives = 124/232 (53%), Gaps = 14/232 (6%)

Query: 139 WKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGF 198
             +R  + +P  Y++G   +  L   V+EGV IPRP+TEL+V+    +L++      D  
Sbjct: 59  LLERRAEGEPVAYILGSAEFGGLRFKVDEGVLIPRPDTELLVEAALALLLQL-----DKR 113

Query: 199 WVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG 258
            +DLGTGSGAIAI +A+       +IAVD++P A A+A  NA+R GL  ++ + Q   F 
Sbjct: 114 ILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGLVRVLVV-QSDLF- 170

Query: 259 KLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASM 318
             + + GK   +VSNPPYIP++D   L  EV ++EP LAL GG DGL+    +      +
Sbjct: 171 --EPLRGKFDLIVSNPPYIPAEDPE-LLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDI 227

Query: 319 LKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFR 370
           LKPGG    E  G  Q + +K   E+     F  V  + D  G  R V    
Sbjct: 228 LKPGGVLILEI-GLTQGEAVKALFED--TGFFEIVETLKDLFGRDRVVLAKL 276

Length = 280

>gnl|CDD|129627 TIGR00536, hemK_fam, HemK family putative methylases

 Score =  181 bits (462), Expect = 6e-55
 Identities = 100/314 (31%), Positives = 141/314 (44%), Gaps = 38/314 (12%)

Query: 62  TLSDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQN 121
           T+ +  +W       ASS  S     +N    ++L      L+   L     +       
Sbjct: 2   TIQEALRW-------ASSALSRAIARENPWLEALL------LLLHDLGRERDLLLAFLT- 47

Query: 122 NSQSVRLRIGLDELYGLWKQRIEKRK---PFQYLVGCEHWRDLVLSVEEGVFIPRPETEL 178
                   +  DE   +  + + +R    P  YL+G + +  L   V E V IPRPETE 
Sbjct: 48  ------EELTPDEKERI-FRLVLRRVKGVPVAYLLGSKEFYGLEFFVNEHVLIPRPETEE 100

Query: 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238
           +V+     L+  N  L     +DLGTGSG IA+ +A    +   +IAVD++P A AVA  
Sbjct: 101 LVEKALASLISQNPILH---ILDLGTGSGCIALALAYEFPNA-EVIAVDISPDALAVAEE 156

Query: 239 NAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLAL 298
           NA++  L+  +E  Q + F  L     K+  +VSNPPYI  +D++ L   V + EP LAL
Sbjct: 157 NAEKNQLEHRVEFIQSNLFEPLAGQ--KIDIIVSNPPYIDEEDLADLPNVV-RFEPLLAL 213

Query: 299 DGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFC--NVSIV 356
            GG DGL+ L  +       LKP GF   E  G  Q K LK  L       F   +V   
Sbjct: 214 VGGDDGLNILRQIIELAPDYLKPNGFLVCEI-GNWQQKSLKELLRI----KFTWYDVENG 268

Query: 357 SDFAGIQRFVTGFR 370
            D  G +R V GF 
Sbjct: 269 RDLNGKERVVLGFY 282

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain [Protein fate, Protein modification and repair]. Length = 284

>gnl|CDD|234247 TIGR03533, L3_gln_methyl, protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

 Score =  121 bits (306), Expect = 5e-32
 Identities = 75/210 (35%), Positives = 101/210 (48%), Gaps = 33/210 (15%)

Query: 133 DELYGLWKQRIEKRKPFQYLVGCEHW-RDLVLSVEEGVFIPR-PETELMVDLVSDVLVRD 190
           + +  L ++RIE+R P  YL   E W   L   V+E V IPR P  EL            
Sbjct: 62  ERILELIERRIEERIPVAYLTN-EAWFAGLEFYVDERVLIPRSPIAEL------------ 108

Query: 191 NDGLRDGF--WV---------DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN 239
              + DGF  W+         DL TGSG IAI  A     +  + AVD++P A AVA  N
Sbjct: 109 ---IEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEIN 164

Query: 240 AQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALD 299
            +R+GL+D + + Q   F  L   +  L  +VSNPPY+ ++D++ L  E   HEP LAL 
Sbjct: 165 IERHGLEDRVTLIQSDLFAALPGRKYDL--IVSNPPYVDAEDMADLPAEYH-HEPELALA 221

Query: 300 GGVDGLDYLLHLCNGTASMLKPGGFFAFET 329
            G DGLD +  +    A  L   G    E 
Sbjct: 222 SGEDGLDLVRRILAEAADHLNENGVLVVEV 251

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 284

>gnl|CDD|236988 PRK11805, PRK11805, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

 Score =  113 bits (286), Expect = 6e-29
 Identities = 69/197 (35%), Positives = 94/197 (47%), Gaps = 33/197 (16%)

Query: 140 KQRIEKRKPFQYLVGCEHW-RDLVLSVEEGVFIPR-PETELMVDLVSDVLVRDNDGLRDG 197
           ++RI +R P  YL   E W   L   V+E V +PR P  EL               + DG
Sbjct: 81  ERRINERIPAAYLTN-EAWFCGLEFYVDERVLVPRSPIAEL---------------IEDG 124

Query: 198 F--WV---------DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ 246
           F  W+         DL TGSG IAI  A        + AVD++P A AVA  N +R+GL+
Sbjct: 125 FAPWLEDPPVTRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLE 183

Query: 247 DIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLD 306
           D + + +   F  L      L  +VSNPPY+ ++D++ L  E  +HEP LAL  G DGLD
Sbjct: 184 DRVTLIESDLFAALPGRRYDL--IVSNPPYVDAEDMADLPAEY-RHEPELALAAGDDGLD 240

Query: 307 YLLHLCNGTASMLKPGG 323
            +  +       L   G
Sbjct: 241 LVRRILAEAPDYLTEDG 257

Length = 307

>gnl|CDD|234318 TIGR03704, PrmC_rel_meth, putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

 Score =  110 bits (277), Expect = 2e-28
 Identities = 63/202 (31%), Positives = 97/202 (48%), Gaps = 10/202 (4%)

Query: 133 DELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDND 192
            EL  +  +R+    P ++++G   +  L ++V+ GVF+PR  TE +VD           
Sbjct: 28  GELAAMVDRRVAG-LPLEHVLGWAEFCGLRIAVDPGVFVPRRRTEFLVDEA---AALARP 83

Query: 193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIR 252
                  VDL  GSGA+   +A  L     + A D++P A   A  N    G      + 
Sbjct: 84  RSGTLVVVDLCCGSGAVGAALAAALDGI-ELHAADIDPAAVRCARRNLADAGGT----VH 138

Query: 253 QGSWFGKL-KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHL 311
           +G  +  L   + G++  + +N PY+P+D I+ +  E   HEPR+ALDGG DGLD L  +
Sbjct: 139 EGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRV 198

Query: 312 CNGTASMLKPGGFFAFETNGEK 333
             G    L PGG    ET+  +
Sbjct: 199 AAGAPDWLAPGGHLLVETSERQ 220

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 251

>gnl|CDD|184930 PRK14966, PRK14966, unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

 Score = 98.2 bits (244), Expect = 1e-22
 Identities = 81/228 (35%), Positives = 110/228 (48%), Gaps = 14/228 (6%)

Query: 141 QRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWV 200
           QR    +P  Y++G   +     +V   V IPRPETE    LV  VL R  +  R   W 
Sbjct: 203 QRRLNGEPVAYILGVREFYGRRFAVNPNVLIPRPETE---HLVEAVLARLPENGR--VW- 256

Query: 201 DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL 260
           DLGTGSGA+A+ +A +      + A D++P A   A  NA   G +  +E   GSWF   
Sbjct: 257 DLGTGSGAVAVTVA-LERPDAFVRASDISPPALETARKNAADLGAR--VEFAHGSWFDTD 313

Query: 261 KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLK 320
              EGK   +VSNPPYI + D   LQ ++ + EP++AL    DGL  +  L  G    L 
Sbjct: 314 MPSEGKWDIIVSNPPYIENGDKHLLQGDL-RFEPQIALTDFSDGLSCIRTLAQGAPDRLA 372

Query: 321 PGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTG 368
            GGF   E +G  Q   ++  L  +    F  V  + D AG+ R   G
Sbjct: 373 EGGFLLLE-HGFDQGAAVRGVLAEN---GFSGVETLPDLAGLDRVTLG 416

Length = 423

>gnl|CDD|234958 PRK01544, PRK01544, bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

 Score = 92.2 bits (229), Expect = 2e-20
 Identities = 63/224 (28%), Positives = 99/224 (44%), Gaps = 26/224 (11%)

Query: 141 QRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLV----------------- 183
           +R  K +P  Y+ G + +      V + V IPR +TE++VD+V                 
Sbjct: 64  ERRLKHEPIAYITGVKEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLN 123

Query: 184 ---SDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA 240
                  +  N   +    ++LGTGSG IAI +   L    ++IA D++  A  VA  NA
Sbjct: 124 PCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNA 182

Query: 241 QRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDG 300
            +Y + D I+I   +WF  ++  + K   +VSNPPYI   + S + +E   +EP +AL  
Sbjct: 183 IKYEVTDRIQIIHSNWFENIE--KQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFA 240

Query: 301 GVDGLDYLLHLCNGTASMLKPGGFFAFE---TNGEKQCKFLKNY 341
             DGL     +       LKP G    E      E   +   ++
Sbjct: 241 EEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIFLDH 284

Length = 506

>gnl|CDD|184931 PRK14967, PRK14967, putative methyltransferase; Provisional

 Score = 77.4 bits (191), Expect = 2e-16
 Identities = 55/159 (34%), Positives = 80/159 (50%), Gaps = 18/159 (11%)

Query: 167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWV-DLGTGSGAIAIGIARVLGSKGSIIA 225
            GV+ P+ +T+L+ D     L  +  GL  G  V DL TGSGA+A+  A   G+ GS+ A
Sbjct: 13  PGVYRPQEDTQLLAD----ALAAE--GLGPGRRVLDLCTGSGALAVAAAA-AGA-GSVTA 64

Query: 226 VDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGL 285
           VD++  A   A  NA   G+   +++R+G W   ++        VVSNPPY+P+   +  
Sbjct: 65  VDISRRAVRSARLNALLAGVD--VDVRRGDWARAVE--FRPFDVVVSNPPYVPAPPDA-- 118

Query: 286 QVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGF 324
                   P  A D G DG   L  LC+   ++L PGG 
Sbjct: 119 ---PPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGS 154

Length = 223

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 66.7 bits (163), Expect = 1e-13
 Identities = 36/132 (27%), Positives = 50/132 (37%), Gaps = 19/132 (14%)

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK 259
           +D G GSGA  +  AR  G    ++ V+L+P AAA+A       GL   + +  G     
Sbjct: 5   LDPGAGSGAFLLAAAR-AGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDAREL 63

Query: 260 LKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASML 319
           L+  +G    V+ NPPY P           G  +         D  D           +L
Sbjct: 64  LELPDGSFDLVLGNPPYGPR---------AGDPK---------DNRDLYDRFLAAALRLL 105

Query: 320 KPGGFFAFETNG 331
           KPGG     T  
Sbjct: 106 KPGGVLVVITPA 117

This family contains methyltransferase domains. Length = 117

>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional

 Score = 63.8 bits (156), Expect = 5e-12
 Identities = 42/160 (26%), Positives = 77/160 (48%), Gaps = 19/160 (11%)

Query: 165 VEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSII 224
           + + V+ P  ++ L+ +     + +  D +     +++GTGSG +AI  A+  G K  ++
Sbjct: 1   LNDEVYEPAEDSFLLAENA---VDKKGDRV-----LEVGTGSGIVAIVAAK-NGKK--VV 49

Query: 225 AVDLNPLAAAVAAFNAQRYGLQDI-IEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDIS 283
            VD+NP A   A  NA+   +++  +E+ +   F   +    K   ++ NPPY+P+++  
Sbjct: 50  GVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRG--DKFDVILFNPPYLPTEE-- 105

Query: 284 GLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGG 323
               E        AL GG DG + +    +     LKPGG
Sbjct: 106 ---EEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGG 142

Length = 188

>gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only]

 Score = 59.2 bits (144), Expect = 4e-10
 Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 16/132 (12%)

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSW--F 257
           +DLG G+GA+ + +A+    K  I+ V++   AA +A  N     L++ I++ +     F
Sbjct: 49  LDLGAGNGALGLLLAQ-RTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEF 107

Query: 258 GKLKDVEGKLSGVVSNPPYIPSDDISGL--QVEVGKHEPRLALDGGVDGLDYLLHLCNGT 315
            K   V      ++ NPPY              + +HE  L L+           L    
Sbjct: 108 LKAL-VFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLED----------LIRAA 156

Query: 316 ASMLKPGGFFAF 327
           A +LKPGG  AF
Sbjct: 157 AKLLKPGGRLAF 168

Length = 248

>gnl|CDD|129628 TIGR00537, hemK_rel_arch, HemK-related putative methylase

 Score = 55.6 bits (134), Expect = 3e-09
 Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 17/126 (13%)

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK 259
           +++G G+G +AI   R+ G    I+  D+NP A      NA+   +   +++     F  
Sbjct: 24  LEIGAGTGLVAI---RLKGKGKCILTTDINPFAVKELRENAKLNNVG--LDVVMTDLF-- 76

Query: 260 LKDVEGKLSGVVSNPPYIPS--DDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTAS 317
            K V GK   ++ NPPY+P   D   G  ++V       A+DGG DG   +    +    
Sbjct: 77  -KGVRGKFDVILFNPPYLPLEDDLRRGDWLDV-------AIDGGKDGRKVIDRFLDELPE 128

Query: 318 MLKPGG 323
           +LK GG
Sbjct: 129 ILKEGG 134

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes [Unknown function, Enzymes of unknown specificity]. Length = 179

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 51.3 bits (123), Expect = 2e-08
 Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK 259
           +DLG G+GA+A+ +A   G    +  VD++P+A  +A   A      + +E+ +G     
Sbjct: 3   LDLGCGTGALALALAS--GPGARVTGVDISPVALELARKAAAALLADN-VEVLKGDAEEL 59

Query: 260 LKDVEGKLSGVVSNPPYIPSDD 281
             + +     ++S+PP     +
Sbjct: 60  PPEADESFDVIISDPPLHHLVE 81

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed

 Score = 50.5 bits (122), Expect = 3e-07
 Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 6/56 (10%)

Query: 201 DLGTGSG--AIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254
           D+G GSG  AIA   A  LG+K  ++AVD++P A   A  NA+  G++  + + QG
Sbjct: 125 DVGCGSGILAIA---AAKLGAK-KVLAVDIDPQAVEAARENAELNGVELNVYLPQG 176

Length = 250

>gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)

 Score = 50.7 bits (122), Expect = 4e-07
 Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 9/74 (12%)

Query: 201 DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL 260
           D+G GSG +AI   + LG+K  ++ VD++P+A   A  NA+  G++  +E+         
Sbjct: 166 DVGCGSGILAIAALK-LGAK-KVVGVDIDPVAVRAAKENAELNGVEAQLEVYL------P 217

Query: 261 KDV-EGKLSGVVSN 273
            D+ EGK   VV+N
Sbjct: 218 GDLPEGKADVVVAN 231

This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences. Length = 294

>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain

 Score = 48.7 bits (117), Expect = 6e-07
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 4/96 (4%)

Query: 180 VDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN 239
           +D+ S +L+        G  +DLG G G +   +A+       +  VD+N  A   A  N
Sbjct: 16  LDIGSRLLLSHLPKPLGGKVLDLGCGYGVLGAALAK-RSPDLEVTMVDINARALESARAN 74

Query: 240 AQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP 275
               GL +  E+     +  ++   GK   ++SNPP
Sbjct: 75  LAANGL-ENGEVFWSDLYSAVEP--GKFDLIISNPP 107

This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170

>gnl|CDD|216342 pfam01170, UPF0020, Putative RNA methylase family UPF0020

 Score = 48.4 bits (116), Expect = 7e-07
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 3/73 (4%)

Query: 205 GSGAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV 263
           GSG I I  A ++G+    +   D++      A  NA+  G+ D IE  Q     KL  +
Sbjct: 38  GSGTILIE-AALMGANIAPLYGSDIDWRMVQGARINAENAGVGDKIEFVQAD-AAKLPLL 95

Query: 264 EGKLSGVVSNPPY 276
            G +  +V+NPPY
Sbjct: 96  NGSVDAIVTNPPY 108

This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains. Length = 172

>gnl|CDD|232960 TIGR00406, prmA, ribosomal protein L11 methyltransferase

 Score = 49.8 bits (119), Expect = 7e-07
 Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 23/146 (15%)

Query: 139 WKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFI-----------PRPETELMVDLVSDVL 187
           WK      +  +    C  WRD V S E+ + I             P T L ++ + D+ 
Sbjct: 99  WKDNFHPVQFGKRFWICPSWRD-VPSDEDALIIMLDPGLAFGTGTHPTTSLCLEWLEDLD 157

Query: 188 VRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQD 247
           ++D + +      D+G GSG ++I  A  LG+   ++ +D++PLA   A  NA+   + D
Sbjct: 158 LKDKNVI------DVGCGSGILSIA-ALKLGAA-KVVGIDIDPLAVESARKNAELNQVSD 209

Query: 248 IIEIRQGSWFGKLKDVEGKLSGVVSN 273
            ++++        + +EGK   +V+N
Sbjct: 210 RLQVKLI---YLEQPIEGKADVIVAN 232

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 288

>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism]

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 5/65 (7%)

Query: 193 GLRDG--FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIE 250
             R G   W D+G G+G+I I  A   G  G +IA++ +  A  +   NA R+G+ D +E
Sbjct: 31  RPRPGDRLW-DIGAGTGSITIEWALA-GPSGRVIAIERDEEALELIERNAARFGV-DNLE 87

Query: 251 IRQGS 255
           + +G 
Sbjct: 88  VVEGD 92

Length = 187

>gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 33/128 (25%)

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK 259
           ++ GTGSGA+   +AR +G +G +   ++    A  A  N   +GL D + +       K
Sbjct: 99  LEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTL-------K 151

Query: 260 LKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASML 319
           L DV                + I    V+       + LD   D  + L H+    +  L
Sbjct: 152 LGDV---------------REGIDEEDVDA------VFLDLP-DPWNVLEHV----SDAL 185

Query: 320 KPGGFFAF 327
           KPGG    
Sbjct: 186 KPGGVVVV 193

Length = 256

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 35/132 (26%), Positives = 48/132 (36%), Gaps = 32/132 (24%)

Query: 199 WVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG 258
            +D+G G+G++AI +AR L     +  VDL+P    +A  NA+   L   I   QG    
Sbjct: 5   VLDIGCGTGSLAIELAR-LFPGARVTGVDLSPEMLELARENAKL-ALGPRITFVQGDAPD 62

Query: 259 KLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASM 318
            L  +E                                   GG  G   LL L +  AS+
Sbjct: 63  ALDLLE----------------------------GFDAVFIGG--GGGDLLELLDALASL 92

Query: 319 LKPGGFFAFETN 330
           LKPGG       
Sbjct: 93  LKPGGRLVLNAV 104

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 45.5 bits (108), Expect = 6e-06
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF 257
           +DLG G+G +   +A  LG    ++ +D++  A   A  NA++ G ++ +E  QG   
Sbjct: 8   LDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYEN-VEFIQGDIE 64

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 4/73 (5%)

Query: 201 DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL 260
           D+G GSG +AI  A+ LG+K  ++ VD++P A   A  NA+  G++ +++ +        
Sbjct: 168 DVGCGSGILAIAAAK-LGAK-KVVGVDIDPQAVEAARENARLNGVELLVQAKGFL--LLE 223

Query: 261 KDVEGKLSGVVSN 273
               G    +V+N
Sbjct: 224 VPENGPFDVIVAN 236

Length = 300

>gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 17/126 (13%)

Query: 159 RDLVLSVEEGVFIPRPETEL---MVD--LVSDVL-VRDNDGLRDGFWV-DLGTGSGAIAI 211
           ++L + +E+    P P+  L        L + +L V    G  +G  V DLG G+G +AI
Sbjct: 2   KELEILLEKLKGFPNPKLGLEQYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAI 61

Query: 212 GIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ-DIIEIRQGSWFGKLKDVEGKLSGV 270
           G A +LG+   ++AVD++P A  +A  NA+      + +          + D  GK   V
Sbjct: 62  G-AALLGAS-RVLAVDIDPEALEIARANAEELLGDVEFVV-------ADVSDFRGKFDTV 112

Query: 271 VSNPPY 276
           + NPP+
Sbjct: 113 IMNPPF 118

Length = 198

>gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 21/84 (25%), Positives = 46/84 (54%), Gaps = 5/84 (5%)

Query: 171 IPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNP 230
           IP  + E+    +S + +R  D +     +D+G G+G++ +  + ++G  G + AVD + 
Sbjct: 21  IPMTKEEIRALALSKLRLRKGDMI-----LDIGCGTGSVTVEASLLVGETGKVYAVDKDE 75

Query: 231 LAAAVAAFNAQRYGLQDIIEIRQG 254
            A  +   NA+++G+ + I + +G
Sbjct: 76  KAINLTRRNAEKFGVLNNIVLIKG 99

Length = 198

>gnl|CDD|236981 PRK11783, rlmL, 23S rRNA m(2)G2445 methyltransferase; Provisional

 Score = 44.4 bits (106), Expect = 8e-05
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 6/69 (8%)

Query: 210 AIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSG 269
             G+A +          D++P     A  NA+R G+ ++I          LK+   K   
Sbjct: 249 RAGLAEL---PSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKD-VADLKNPLPKGPT 304

Query: 270 --VVSNPPY 276
             V+SNPPY
Sbjct: 305 GLVISNPPY 313

Length = 702

>gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 15/55 (27%), Positives = 27/55 (49%)

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254
           +++GT  G  A+ +A  L   G +  ++ +   A +A  N    G+ D IE+  G
Sbjct: 64  LEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLG 118

Length = 219

>gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 5/65 (7%)

Query: 193 GLRDG--FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIE 250
            LR G   W D+G G+G++ I  AR++   G + A++ NP A  +   N +R+G+ + I 
Sbjct: 16  RLRPGDVLW-DIGAGTGSVTIEAARLVP-NGRVYAIERNPEALDLIERNLRRFGVSN-IV 72

Query: 251 IRQGS 255
           I +G 
Sbjct: 73  IVEGD 77

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 124

>gnl|CDD|217008 pfam02384, N6_Mtase, N-6 DNA Methylase

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 45/195 (23%), Positives = 74/195 (37%), Gaps = 34/195 (17%)

Query: 169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWV-DLGTGSGAIAIGIARVLGSKG------ 221
            + PR  ++L+V+L+           + G  + D   GSG   I   + + S        
Sbjct: 28  FYTPREVSKLIVELLEP---------KPGESIYDPACGSGGFLIQADKFVKSHDGDTNDI 78

Query: 222 SIIAVDLNPLAAAVAAFNAQRYGLQ-DIIEIRQGSWFGK-LKDVEGKLSGVVSNPPYIPS 279
           SI   +LNP    +A  N   +G++ +   IR G        + + K   VV+NPP+   
Sbjct: 79  SIYGQELNPTTYRLARMNMILHGIEYNDFGIRHGDTLLSPKFEEDKKFDVVVANPPF-NQ 137

Query: 280 DDISGLQVEVGKHEPRLALDG----GVDGLDYLLHLC-----NGTASMLKPGGFFAFETN 330
              +   +E     PR    G          +L H+      NG A+++ P G   F   
Sbjct: 138 KWDANDNLEND---PRFRAYGVPPKSNADFAFLQHIIYHLSPNGRAAVVLPNGVL-FRGG 193

Query: 331 GEKQCKFLKNYLEND 345
            E   +  K  +E D
Sbjct: 194 AEGDIR--KALVEKD 206

Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes. Length = 312

>gnl|CDD|223194 COG0116, COG0116, Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 223 IIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPY 276
           I   D++P     A  NA+  G+ D+IE +Q      LK+   +   V+SNPPY
Sbjct: 257 IYGSDIDPRHIEGAKANARAAGVGDLIEFKQAD-ATDLKEPLEEYGVVISNPPY 309

Length = 381

>gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238
            +D  S +L+        G  +DLG G G + + +A+    +  +  VD+N  A   A  
Sbjct: 142 KLDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARK 200

Query: 239 NAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP 275
           N    G+++  E+   + +   + VEGK   ++SNPP
Sbjct: 201 NLAANGVENT-EVWASNLY---EPVEGKFDLIISNPP 233

Length = 300

>gnl|CDD|220246 pfam09445, Methyltransf_15, RNA cap guanine-N2 methyltransferase

 Score = 37.7 bits (88), Expect = 0.004
 Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 6/80 (7%)

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF-- 257
           +D+  G+G   I  A V  S   +I +D+NP   A A  NA+ YG+ D I    G WF  
Sbjct: 5   LDVFCGAGGNTIQFANVFCS---VIGIDINPEHLACAQHNAEVYGVSDRIWFILGDWFEL 61

Query: 258 -GKLKDVEGKLSGVVSNPPY 276
             KLK  +     V  +PP+
Sbjct: 62  LAKLKFGKIPYDCVFLSPPW 81

RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe Tgs1 and Giardia lamblia Tgs2 catalyze methylation of the exocyclic N2 amine of 7-methylguanosine. Length = 165

>gnl|CDD|140001 PRK13944, PRK13944, protein-L-isoaspartate O-methyltransferase; Provisional

 Score = 37.9 bits (88), Expect = 0.004
 Identities = 17/55 (30%), Positives = 29/55 (52%)

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254
           +++GTGSG  A   A  +  +G +  V++    A  AA N +R G   ++E+  G
Sbjct: 77  LEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHG 131

Length = 205

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	371
KOG2904	328	consensus Predicted methyltransferase [General fun	100.0
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	100.0
COG2890	280	HemK Methylase of polypeptide chain release factor	100.0
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	100.0
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	100.0
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	100.0
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	100.0
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	100.0
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	100.0
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	100.0
PLN02672	1082	methionine S-methyltransferase	100.0
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.91
PRK14967	223	putative methyltransferase; Provisional	99.88
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.87
COG4123	248	Predicted O-methyltransferase [General function pr	99.85
PRK14968	188	putative methyltransferase; Provisional	99.84
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	99.83
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.82
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	99.81
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.8
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.77
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.77
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.76
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.76
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.74
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.71
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.71
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.69
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.69
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.68
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.67
PLN02336	475	phosphoethanolamine N-methyltransferase	99.67
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.67
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.66
PHA03411	279	putative methyltransferase; Provisional	99.65
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.65
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.65
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.65
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.65
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.64
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.63
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.63
PHA03412	241	putative methyltransferase; Provisional	99.62
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.61
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.61
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.61
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.61
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.6
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.6
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.59
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.58
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.58
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.57
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.57
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.57
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.56
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.56
PLN02244	340	tocopherol O-methyltransferase	99.55
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.55
PLN02490	340	MPBQ/MSBQ methyltransferase	99.55
PRK07402	196	precorrin-6B methylase; Provisional	99.55
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.55
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.54
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.54
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.53
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	99.52
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.52
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.52
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.51
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.51
COG0742	187	N6-adenine-specific methylase [DNA replication, re	99.5
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	99.5
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.5
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.49
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.49
TIGR00438	188	rrmJ cell division protein FtsJ.	99.48
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.47
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.47
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.47
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.46
PRK12335	287	tellurite resistance protein TehB; Provisional	99.46
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.46
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.46
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.45
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.45
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.45
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.45
PRK04457	262	spermidine synthase; Provisional	99.45
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.45
PRK11207	197	tellurite resistance protein TehB; Provisional	99.44
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	99.44
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.43
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.43
PLN02476	278	O-methyltransferase	99.42
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.41
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.41
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.41
PRK04266	226	fibrillarin; Provisional	99.4
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.4
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.4
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.4
KOG1271	227	consensus Methyltransferases [General function pre	99.4
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.39
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.39
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.39
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.39
PRK08317	241	hypothetical protein; Provisional	99.38
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.38
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.37
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.37
PLN03075	296	nicotianamine synthase; Provisional	99.37
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	99.37
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.37
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.36
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.36
COG4122	219	Predicted O-methyltransferase [General function pr	99.36
COG2265	432	TrmA SAM-dependent methyltransferases related to t	99.35
PRK00811	283	spermidine synthase; Provisional	99.35
COG1041	347	Predicted DNA modification methylase [DNA replicat	99.34
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.34
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.34
PRK06922	677	hypothetical protein; Provisional	99.33
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.33
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.32
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.32
PRK03612	521	spermidine synthase; Provisional	99.3
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.3
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	99.29
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.29
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.29
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.28
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.28
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.28
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.27
PLN02589	247	caffeoyl-CoA O-methyltransferase	99.27
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.27
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.25
PRK01581	374	speE spermidine synthase; Validated	99.25
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	99.25
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.23
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	99.23
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	99.23
PTZ00146	293	fibrillarin; Provisional	99.23
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.23
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.23
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.23
TIGR03438	301	probable methyltransferase. This model represents	99.23
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	99.22
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.21
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.21
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.21
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.2
PLN02366	308	spermidine synthase	99.19
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.19
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.19
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	99.17
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	99.17
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	99.16
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.15
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	99.14
PRK05785	226	hypothetical protein; Provisional	99.12
PLN02336	475	phosphoethanolamine N-methyltransferase	99.1
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.1
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.1
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.09
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.08
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	99.05
COG2521	287	Predicted archaeal methyltransferase [General func	99.04
KOG2899	288	consensus Predicted methyltransferase [General fun	99.03
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.02
PLN02823	336	spermine synthase	99.01
COG2520	341	Predicted methyltransferase [General function pred	99.01
PRK06202	232	hypothetical protein; Provisional	98.97
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.96
COG0286	489	HsdM Type I restriction-modification system methyl	98.95
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.94
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	98.94
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.93
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.92
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.9
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.89
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.89
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.89
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.86
KOG4300	252	consensus Predicted methyltransferase [General fun	98.85
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.83
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.81
KOG2730	263	consensus Methylase [General function prediction o	98.81
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.8
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.8
PRK04148	134	hypothetical protein; Provisional	98.8
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.79
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.78
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.73
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.7
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.69
KOG2912	419	consensus Predicted DNA methylase [Function unknow	98.65
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.65
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.64
COG3129	292	Predicted SAM-dependent methyltransferase [General	98.63
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.6
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.59
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.58
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.58
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.58
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.56
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.54
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.53
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	98.52
PRK00536	262	speE spermidine synthase; Provisional	98.52
PRK10742	250	putative methyltransferase; Provisional	98.52
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.51
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.49
KOG3010	261	consensus Methyltransferase [General function pred	98.49
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	98.43
KOG2671	421	consensus Putative RNA methylase [Replication, rec	98.43
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.41
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.34
KOG2361	264	consensus Predicted methyltransferase [General fun	98.34
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.33
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.29
COG4262	508	Predicted spermidine synthase with an N-terminal m	98.26
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.25
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	98.23
COG2384	226	Predicted SAM-dependent methyltransferase [General	98.2
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.19
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.16
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.16
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	98.15
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.11
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.09
COG4076	252	Predicted RNA methylase [General function predicti	98.06
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.06
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	98.03
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.02
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	98.01
PF13679	141	Methyltransf_32: Methyltransferase domain	98.0
TIGR00497	501	hsdM type I restriction system adenine methylase (	97.98
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.97
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.95
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	97.94
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	97.9
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.9
COG3897	218	Predicted methyltransferase [General function pred	97.88
KOG3201	201	consensus Uncharacterized conserved protein [Funct	97.79
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	97.77
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	97.76
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	97.7
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	97.64
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	97.59
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.48
KOG3115	249	consensus Methyltransferase-like protein [General	97.45
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	97.45
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	97.44
PF07669	106	Eco57I: Eco57I restriction-modification methylase;	97.43
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	97.41
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	97.36
KOG2940	325	consensus Predicted methyltransferase [General fun	97.35
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	97.35
PRK11524	284	putative methyltransferase; Provisional	97.34
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.32
PRK13699	227	putative methylase; Provisional	97.21
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	96.99
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	96.98
COG1568	354	Predicted methyltransferases [General function pre	96.94
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	96.93
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	96.92
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	96.86
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	96.8
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	96.78
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	96.77
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	96.74
KOG4058	199	consensus Uncharacterized conserved protein [Funct	96.7
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	96.65
PRK11524	284	putative methyltransferase; Provisional	96.61
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	96.6
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	96.5
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	96.48
PRK13699	227	putative methylase; Provisional	96.44
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	96.36
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	96.31
KOG1501	636	consensus Arginine N-methyltransferase [General fu	96.29
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	96.27
COG4798	238	Predicted methyltransferase [General function pred	96.22
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	96.1
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	96.08
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	95.99
PHA01634	156	hypothetical protein	95.98
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	95.92
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	95.83
COG4301	321	Uncharacterized conserved protein [Function unknow	95.53
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	95.53
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	95.52
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	95.4
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	95.27
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	95.25
KOG1331	293	consensus Predicted methyltransferase [General fun	95.18
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	95.04
COG2961	279	ComJ Protein involved in catabolism of external DN	94.9
KOG1227	351	consensus Putative methyltransferase [General func	94.83
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	94.72
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	94.2
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	93.69
PRK10458	467	DNA cytosine methylase; Provisional	93.5
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	93.49
COG1565	370	Uncharacterized conserved protein [Function unknow	93.4
PTZ00357	1072	methyltransferase; Provisional	93.34
KOG2078	495	consensus tRNA modification enzyme [RNA processing	93.29
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	93.2
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	93.17
KOG3350	217	consensus Uncharacterized conserved protein [Funct	93.17
COG4889	1518	Predicted helicase [General function prediction on	92.96
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	92.49
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	92.36
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	92.21
KOG3924	419	consensus Putative protein methyltransferase invol	91.89
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	91.63
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	91.2
KOG2352	482	consensus Predicted spermine/spermidine synthase [	91.03
KOG2360	413	consensus Proliferation-associated nucleolar prote	90.77
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	90.1
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	89.63
KOG2352	482	consensus Predicted spermine/spermidine synthase [	89.53
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	89.43
PF04378	245	RsmJ: Ribosomal RNA small subunit methyltransferas	89.38
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	89.29
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	89.25
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	88.52
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	88.37
PF06460	299	NSP13: Coronavirus NSP13; InterPro: IPR009461 This	88.35
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	88.05
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	87.95
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	87.72
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	87.26
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	87.0
PRK09242	257	tropinone reductase; Provisional	86.92
PRK05867	253	short chain dehydrogenase; Provisional	86.82
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	86.24
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	86.14
PRK07063	260	short chain dehydrogenase; Provisional	85.84
PRK06940	275	short chain dehydrogenase; Provisional	85.57
PRK07326	237	short chain dehydrogenase; Provisional	84.88
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	84.88
KOG2920	282	consensus Predicted methyltransferase [General fun	84.78
PRK06914	280	short chain dehydrogenase; Provisional	83.73
PRK07523	255	gluconate 5-dehydrogenase; Provisional	83.04
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	82.73
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	82.73
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	82.6
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	82.5
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	82.09
PRK06949	258	short chain dehydrogenase; Provisional	82.07
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	81.85
PRK07576	264	short chain dehydrogenase; Provisional	81.81
PF13561	241	adh_short_C2: Enoyl-(Acyl carrier protein) reducta	81.72
PRK07062	265	short chain dehydrogenase; Provisional	81.51
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	81.46
COG0863	302	DNA modification methylase [DNA replication, recom	81.4
PRK05876	275	short chain dehydrogenase; Provisional	81.31
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	80.77
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	80.73
PRK08251	248	short chain dehydrogenase; Provisional	80.48
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	80.46
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	80.37
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	80.33
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	80.3
PRK06124	256	gluconate 5-dehydrogenase; Provisional	80.21

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=100.00  E-value=3.9e-49  Score=362.22  Aligned_cols=296  Identities=35%  Similarity=0.501  Sum_probs=250.0

Q ss_pred             CCCCCCcHHHHHHHHHHHHHHhhhccccccCCCCCCCccchHHHHHHHHHhccCCC-CCcccccccCCcccccc-CchHH
Q 017476           56 PPKYSATLSDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDP-SLIPQLGFQNNSQSVRL-RIGLD  133 (371)
Q Consensus        56 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~~~~~~-~~~~~~~~~~~~~~~~l-~~~~~  133 (371)
                      .|.|.++.+.|..|..|+.....+...+            .+.+..|+..|++... +++..  ..   .+.+| ...++
T Consensus        26 ~p~hat~~sal~~~~~W~~~l~~~~~e~------------~k~~~~~i~shvL~~Kf~si~d--s~---~~~pl~~~ql~   88 (328)
T KOG2904|consen   26 TPSHATSLSALELLLPWTRTLEQAGEES------------SKLSYKWIVSHVLPDKFWSIED--SI---VDDPLVILQLE   88 (328)
T ss_pred             CCccCccchhhHhhchHHHHHHHhcCch------------hhhhhHHHHHhhhhhhhccccc--hh---hccccchhHHH
Confidence            4788899999999999997664432221            1256789999999866 11111  11   12234 34678


Q ss_pred             HHHHHHHHHhhcCCceeeEeecccccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHH
Q 017476          134 ELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGI  213 (371)
Q Consensus       134 ~~~~~~~~r~~~~~P~~yi~g~~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~l  213 (371)
                      .+++.|.+|.+ +.|+|||+|+++|.++++.+.|+|||||||||.+++++++.+ .+.....+..|||+|||||++++.+
T Consensus        89 ~i~~~~~~R~~-r~PlQYIlg~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~-~~~~~~~~~~ildlgtGSGaIslsl  166 (328)
T KOG2904|consen   89 SIRWACLQRYK-RMPLQYILGSQPFGDLDLVCKPGVLIPRPETEEWVEAVIDAL-NNSEHSKHTHILDLGTGSGAISLSL  166 (328)
T ss_pred             HHHHHHHHHHh-cCChhheeccCccCCceEEecCCeeecCccHHHHHHHHHHHH-hhhhhcccceEEEecCCccHHHHHH
Confidence            88899988866 899999999999999999999999999999999999999988 5555556678999999999999999


Q ss_pred             HHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE----EcCcccccccCCCceeEEEEcCCCCCCCCcccchhhh
Q 017476          214 ARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIR----QGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEV  289 (371)
Q Consensus       214 a~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~----~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev  289 (371)
                      +..+ +..+|+|||.|+.|+.+|.+|++++++.+++.++    ++|++++.+...+++|+++||||||..+++..+.++|
T Consensus       167 l~~L-~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV  245 (328)
T KOG2904|consen  167 LHGL-PQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEV  245 (328)
T ss_pred             HhcC-CCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchh
Confidence            9998 6899999999999999999999999999998887    6788777666679999999999999999999999999


Q ss_pred             cccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcC-cHHHHHHHHhccccCCceeEEEEecCCCCceEEEE
Q 017476          290 GKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEK-QCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTG  368 (371)
Q Consensus       290 ~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~-q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a  368 (371)
                      +.|||.+||+||.+|++.+..++..+.++|+|||++.+|.++.. ....+..++.......+..+.++.|++|++||++.
T Consensus       246 ~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~~~lv~~~m~s~~~d~~~~~~v~~Df~~~~Rfv~i  325 (328)
T KOG2904|consen  246 RLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKEHSYLVRIWMISLKDDSNGKAAVVSDFAGRPRFVII  325 (328)
T ss_pred             eecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecccccCcHHHHHHHHhchhhccchhheeecccCCcceEEE
Confidence            99999999999999999999999999999999999999996444 34455666665545668899999999999999999


Q ss_pred             EeC
Q 017476          369 FRQ  371 (371)
Q Consensus       369 ~~~  371 (371)
                      +|.
T Consensus       326 ~r~  328 (328)
T KOG2904|consen  326 HRI  328 (328)
T ss_pred             EeC
Confidence            874

>TIGR00536 hemK_fam HemK family putative methylases

Probab=100.00  E-value=1e-47  Score=368.07  Aligned_cols=281  Identities=33%  Similarity=0.440  Sum_probs=236.9

Q ss_pred             HHHHHHHHHHHhhhccccccCCCCCCCccchHHHHHHHHHhccCCCCCcccccccCCccccccCchHHHHHHHHHHHhhc
Q 017476           66 LKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEK  145 (371)
Q Consensus        66 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~  145 (371)
                      +.++++|+......++..        +.  ...|+++|+++++++++....+.     .+..++.+..+.++.+.+|+.+
T Consensus         3 ~~~~~~~~~~~l~~~~~~--------~~--~~~~a~~ll~~~l~~~~~~~~~~-----~~~~l~~~~~~~~~~~~~~r~~   67 (284)
T TIGR00536         3 IQEALRWASSALSRAIAR--------EN--PWLEALLLLLHDLGRERDLLLAF-----LTEELTPDEKERIFRLVLRRVK   67 (284)
T ss_pred             HHHHHHHHHHHHHHCCCC--------CC--HHHHHHHHHHHHHCcCHHHHhhc-----cCCCCCHHHHHHHHHHHHHHHc
Confidence            456777776665433321        00  13699999999999885433211     1235676667778888889999


Q ss_pred             CCceeeEeecccccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEE
Q 017476          146 RKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIA  225 (371)
Q Consensus       146 ~~P~~yi~g~~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~g  225 (371)
                      ++|+|||+|..+|++++|.|++++|+|||+||.+++.+++.+...   .+..+|||+|||+|++++.++..+ ++.+|+|
T Consensus        68 ~~pl~yi~g~~~f~g~~f~v~~~vliPr~ete~lv~~~l~~~~~~---~~~~~vLDlG~GsG~i~l~la~~~-~~~~v~a  143 (284)
T TIGR00536        68 GVPVAYLLGSKEFYGLEFFVNEHVLIPRPETEELVEKALASLISQ---NPILHILDLGTGSGCIALALAYEF-PNAEVIA  143 (284)
T ss_pred             CCCHHHHhCcceEcCeEEEECCCCcCCCCccHHHHHHHHHHhhhc---CCCCEEEEEeccHhHHHHHHHHHC-CCCEEEE
Confidence            999999999999999999999999999999999999988765111   122589999999999999999985 7789999


Q ss_pred             EeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcH
Q 017476          226 VDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGL  305 (371)
Q Consensus       226 vDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl  305 (371)
                      +|+|+++++.|++|++.+++.++++++++|+++.+..  .+||+||+||||++..+...+ +++..|||..||+||.||+
T Consensus       144 vDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~--~~fDlIvsNPPyi~~~~~~~~-~~~~~~eP~~AL~gg~dgl  220 (284)
T TIGR00536       144 VDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAG--QKIDIIVSNPPYIDEEDLADL-PNVVRFEPLLALVGGDDGL  220 (284)
T ss_pred             EECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcC--CCccEEEECCCCCCcchhhcC-CcccccCcHHHhcCCCcHH
Confidence            9999999999999999999877799999999886542  489999999999999887666 7778899999999999999


Q ss_pred             HHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEecCCCCceEEEEEeC
Q 017476          306 DYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFRQ  371 (371)
Q Consensus       306 ~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~~~  371 (371)
                      +.++.+++.+.++|+|||++++|+ +..|.+.+.+++...  .+|..+++++|++|++|++++++.
T Consensus       221 ~~~~~ii~~a~~~L~~gG~l~~e~-g~~q~~~~~~~~~~~--~~~~~~~~~~D~~g~~R~~~~~~~  283 (284)
T TIGR00536       221 NILRQIIELAPDYLKPNGFLVCEI-GNWQQKSLKELLRIK--FTWYDVENGRDLNGKERVVLGFYH  283 (284)
T ss_pred             HHHHHHHHHHHHhccCCCEEEEEE-CccHHHHHHHHHHhc--CCCceeEEecCCCCCceEEEEEec
Confidence            999999999999999999999999 678999999999842  679999999999999999999863

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.5e-47  Score=363.75  Aligned_cols=274  Identities=34%  Similarity=0.453  Sum_probs=232.6

Q ss_pred             HHHHHHHHHHHHhhhccccccCCCCCCCccchHHHHHHHHHhccCCCCCcccccccCCccccccCchHHHHHHHHHHHhh
Q 017476           65 DLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIE  144 (371)
Q Consensus        65 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~  144 (371)
                      ++.+|++|+.+++..++ .   ++        ..+++.++.+.++.++....     ......+..+..+.+..+..|+.
T Consensus         2 ~~~~~l~~a~~~l~~~~-~---~~--------~~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~rr~   64 (280)
T COG2890           2 TIRQALREAVSRLSAAG-G---TP--------NLDAELLLLHLLGKPRDQLL-----AHPEAELSEEELERLRELLERRA   64 (280)
T ss_pred             cHHHHHHHHHHHHHhcC-C---CC--------cccHHHHHHHHhCCCHHHHh-----hccccccCHHHHHHHHHHHHHHH
Confidence            68899999998888776 1   11        14677888888887543222     11123455444555555556669


Q ss_pred             cCCceeeEeecccccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEE
Q 017476          145 KRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSII  224 (371)
Q Consensus       145 ~~~P~~yi~g~~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~  224 (371)
                      +++|+|||+|..+|++++|.|+++|++|||+||.+++.++... ...   .. +|||+|||||++++.++++. +.++|+
T Consensus        65 ~~~P~~yi~g~~~f~gl~~~v~~~vliPr~dTe~Lve~~l~~~-~~~---~~-~ilDlGTGSG~iai~la~~~-~~~~V~  138 (280)
T COG2890          65 EGEPVAYILGSAEFGGLRFKVDEGVLIPRPDTELLVEAALALL-LQL---DK-RILDLGTGSGAIAIALAKEG-PDAEVI  138 (280)
T ss_pred             CCCCHhHhhccCeecceeeeeCCCceecCCchHHHHHHHHHhh-hhc---CC-cEEEecCChHHHHHHHHhhC-cCCeEE
Confidence            9999999999999999999999999999999999999987433 111   11 79999999999999999986 788999


Q ss_pred             EEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCc
Q 017476          225 AVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDG  304 (371)
Q Consensus       225 gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dG  304 (371)
                      |+|+|+.|++.|++|+..+|+ .++.++++||++.+.   ++||+|||||||++.. ...+.+++.+|||..||.+|.||
T Consensus       139 a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~~---~~fDlIVsNPPYip~~-~~~~~~~~~~~EP~~Al~~g~dG  213 (280)
T COG2890         139 AVDISPDALALARENAERNGL-VRVLVVQSDLFEPLR---GKFDLIVSNPPYIPAE-DPELLPEVVRYEPLLALVGGGDG  213 (280)
T ss_pred             EEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccccC---CceeEEEeCCCCCCCc-ccccChhhhccCHHHHHccCccH
Confidence            999999999999999999999 568888889998776   4999999999999998 67788899999999999999999


Q ss_pred             HHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCC-ceeEEEEecCCCCceEEEEEe
Q 017476          305 LDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACS-FCNVSIVSDFAGIQRFVTGFR  370 (371)
Q Consensus       305 l~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~g-f~~v~~~~Dl~g~~R~~~a~~  370 (371)
                      ++.+++++..+.++|+|||++++|+ +..|.+.|.+++.+   .+ |..+.+++|++|.+|++.+++
T Consensus       214 l~~~~~i~~~a~~~l~~~g~l~le~-g~~q~~~v~~~~~~---~~~~~~v~~~~d~~g~~rv~~~~~  276 (280)
T COG2890         214 LEVYRRILGEAPDILKPGGVLILEI-GLTQGEAVKALFED---TGFFEIVETLKDLFGRDRVVLAKL  276 (280)
T ss_pred             HHHHHHHHHhhHHHcCCCcEEEEEE-CCCcHHHHHHHHHh---cCCceEEEEEecCCCceEEEEEEe
Confidence            9999999999999999999999999 78999999999997   45 888999999999999999876

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=100.00  E-value=1.6e-47  Score=392.35  Aligned_cols=281  Identities=28%  Similarity=0.382  Sum_probs=238.4

Q ss_pred             HHHHHHHHHHHhhhccccccCCCCCCCccchHHHHHHHHHhccCCCCCcccccccCCccccccCchHHHHHHHHHHHhhc
Q 017476           66 LKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEK  145 (371)
Q Consensus        66 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~  145 (371)
                      +.++++|+......++..         .  ...|++||++++++++.....+    + .+..++.+..+.++.+.+||.+
T Consensus         5 ~~~~l~~~~~~l~~~g~~---------~--~~~~a~~Ll~~~l~~~~~~l~~----~-~~~~l~~~~~~~~~~~~~rr~~   68 (506)
T PRK01544          5 IKQILSDATDKLNKIGIS---------S--PQLEARILLQHVINKPIEYLLI----N-LDEQLNEAEIEAFEKLLERRLK   68 (506)
T ss_pred             HHHHHHHHHHHHHHcCCC---------C--HHHHHHHHHHHHHCcCHHHHhh----c-cCCCCCHHHHHHHHHHHHHHHc
Confidence            566777776665544321         1  1368999999999987533321    1 1235666666778888899999


Q ss_pred             CCceeeEeecccccceeeEeeCCcccccchHHHHHHHHHHHhhhc-------------------C-CCCCCCeEEEECCc
Q 017476          146 RKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRD-------------------N-DGLRDGFWVDLGTG  205 (371)
Q Consensus       146 ~~P~~yi~g~~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~-------------------~-~~~~~~~VLDlG~G  205 (371)
                      |+|+|||+|+++|++++|.|+++||||||+||.+++.+++.+...                   . ...++.+|||+|||
T Consensus        69 ~ePlqYI~G~~~F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~G  148 (506)
T PRK01544         69 HEPIAYITGVKEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTG  148 (506)
T ss_pred             CCCHHHHhCcCEEcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCc
Confidence            999999999999999999999999999999999999998765210                   0 01134689999999


Q ss_pred             ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccc
Q 017476          206 SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGL  285 (371)
Q Consensus       206 sG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l  285 (371)
                      ||++++.+++.+ ++.+|+|+|+|+.+++.|++|++.+++.++++++++|+++.+.  .++||+|||||||++..+...+
T Consensus       149 sG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~--~~~fDlIvsNPPYi~~~~~~~l  225 (506)
T PRK01544        149 SGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE--KQKFDFIVSNPPYISHSEKSEM  225 (506)
T ss_pred             hhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc--CCCccEEEECCCCCCchhhhhc
Confidence            999999999886 7889999999999999999999999988889999999987654  3589999999999999888888


Q ss_pred             hhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEecCCCCceE
Q 017476          286 QVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRF  365 (371)
Q Consensus       286 ~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~  365 (371)
                      ..++..|||..||+||.||++.|+.+++.+.++|+|||++++|+ +..|.+.+.+++.+   .||..+++++|++|++||
T Consensus       226 ~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi-g~~q~~~v~~~~~~---~g~~~~~~~~D~~g~~R~  301 (506)
T PRK01544        226 AIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI-GFKQEEAVTQIFLD---HGYNIESVYKDLQGHSRV  301 (506)
T ss_pred             CchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE-CCchHHHHHHHHHh---cCCCceEEEecCCCCceE
Confidence            89999999999999999999999999999999999999999999 78899999999986   679999999999999999


Q ss_pred             EEEE
Q 017476          366 VTGF  369 (371)
Q Consensus       366 ~~a~  369 (371)
                      +++-
T Consensus       302 v~~~  305 (506)
T PRK01544        302 ILIS  305 (506)
T ss_pred             EEec
Confidence            9763

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=100.00  E-value=1.4e-45  Score=364.16  Aligned_cols=255  Identities=32%  Similarity=0.435  Sum_probs=220.9

Q ss_pred             HHHHHHHHHhccCCCCCcccccccCCccccccCchHHHHHHHHHHHhhcCCceeeEeecccccceeeEeeCCcccccchH
Q 017476           97 FRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPET  176 (371)
Q Consensus        97 ~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~P~~yi~g~~~f~~~~~~v~~~vliPrp~t  176 (371)
                      ..|+++|++++++.++....+    + .+..++.+..+.+..+.+||.+|+|+|||+|+++|++++|.|++++|+|||+|
T Consensus       164 ~~dA~~LL~~~l~~~r~~l~~----~-~~~~l~~~~~~~~~~~v~RR~~gePlqYIlG~~~F~G~~f~V~p~vLIPRpeT  238 (423)
T PRK14966        164 KNEARMLLQYASEYTRVQLLT----R-GGEEMPDEVRQRADRLAQRRLNGEPVAYILGVREFYGRRFAVNPNVLIPRPET  238 (423)
T ss_pred             HHHHHHHHHHHHCcCHHHHhh----C-CcccCCHHHHHHHHHHHHHHHcCCCceeEeeeeeecCcEEEeCCCccCCCccH
Confidence            368999999999987533221    1 12356766777788888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCc
Q 017476          177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSW  256 (371)
Q Consensus       177 e~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~  256 (371)
                      |.+++.+++.+ .     ++.+|||+|||+|++++.+++.. ++.+|+|+|+|+.|++.|++|++.++.  +++++++|+
T Consensus       239 E~LVe~aL~~l-~-----~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl  309 (423)
T PRK14966        239 EHLVEAVLARL-P-----ENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLGA--RVEFAHGSW  309 (423)
T ss_pred             HHHHHHhhhcc-C-----CCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcch
Confidence            99999998765 1     24589999999999999999875 788999999999999999999998875  599999999


Q ss_pred             ccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHH
Q 017476          257 FGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCK  336 (371)
Q Consensus       257 ~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~  336 (371)
                      ++......++||+|+|||||++..+...++. +.+|||+.||+||+||++.|+.+++.+.++|+|||++++|+ +.+|.+
T Consensus       310 ~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~-~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi-G~~Q~e  387 (423)
T PRK14966        310 FDTDMPSEGKWDIIVSNPPYIENGDKHLLQG-DLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH-GFDQGA  387 (423)
T ss_pred             hccccccCCCccEEEECCCCCCcchhhhcch-hhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE-CccHHH
Confidence            7653212358999999999999877544444 44799999999999999999999999999999999999999 789999


Q ss_pred             HHHHHHhccccCCceeEEEEecCCCCceEEEEEe
Q 017476          337 FLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFR  370 (371)
Q Consensus       337 ~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~~  370 (371)
                      .+.+++++   .||..+++++|++|++|++.+++
T Consensus       388 ~V~~ll~~---~Gf~~v~v~kDl~G~dR~v~~~~  418 (423)
T PRK14966        388 AVRGVLAE---NGFSGVETLPDLAGLDRVTLGKY  418 (423)
T ss_pred             HHHHHHHH---CCCcEEEEEEcCCCCcEEEEEEE
Confidence            99999986   67999999999999999999876

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=100.00  E-value=1.7e-41  Score=327.85  Aligned_cols=286  Identities=28%  Similarity=0.391  Sum_probs=226.6

Q ss_pred             CCCCcHHHHHHHHHHHHHHhhhcccccc-CCCCCCCccchHHHHHHHHHhccCCCCCcccccccCCccccccCchHHHHH
Q 017476           58 KYSATLSDLKKWHNWAKALASSVRSTFA-DSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELY  136 (371)
Q Consensus        58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  136 (371)
                      +++..+.++.++.+|+......++..+. +.++      ...|++||++++++.++....+    . .+..++.+..+.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~a~~ll~~~l~~~~~~l~~----~-~~~~l~~~~~~~~   76 (307)
T PRK11805          8 EAVNELHTIRDLLRWAVSRFNAAGLFFGHGTDN------AWDEAVQLVLHALHLPLDIPEP----F-LDARLTPSEKARI   76 (307)
T ss_pred             cchhhhhHHHHHHHHHHHHHHhcCCccCCCCCC------HHHHHHHHHHHHHCcCHHHHhh----c-ccCCCCHHHHHHH
Confidence            4456677888899998777654433211 1111      1368999999999987533321    1 1235666666777


Q ss_pred             HHHHHHhh-cCCceeeEeecccccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHH
Q 017476          137 GLWKQRIE-KRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIAR  215 (371)
Q Consensus       137 ~~~~~r~~-~~~P~~yi~g~~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~  215 (371)
                      ..+.+||. +++|+|||+|+++|++++|.|+++|||||++|+.+++.++......   ..+.+|||+|||+|++++.+++
T Consensus        77 ~~~~~rr~~~~~Pl~yi~g~~~F~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~---~~~~~VLDlG~GsG~iai~la~  153 (307)
T PRK11805         77 LELIERRINERIPAAYLTNEAWFCGLEFYVDERVLVPRSPIAELIEDGFAPWLED---PPVTRILDLCTGSGCIAIACAY  153 (307)
T ss_pred             HHHHHHHHHCCccHHHHcCcceEcCcEEEECCCCcCCCCchHHHHHHHHHHHhcc---CCCCEEEEEechhhHHHHHHHH
Confidence            77788886 6999999999999999999999999999999999999876532111   1135899999999999999999


Q ss_pred             HhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCcc
Q 017476          216 VLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPR  295 (371)
Q Consensus       216 ~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~  295 (371)
                      .+ ++.+|+|+|+|+.+++.|++|++.+++.++++++++|+++.++  .++||+|++||||++..++..+..++ .|||.
T Consensus       154 ~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--~~~fDlIvsNPPyi~~~~~~~l~~~~-~~eP~  229 (307)
T PRK11805        154 AF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--GRRYDLIVSNPPYVDAEDMADLPAEY-RHEPE  229 (307)
T ss_pred             HC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--CCCccEEEECCCCCCccchhhcCHhh-ccCcc
Confidence            85 7889999999999999999999999988889999999987654  25899999999999998888888888 59999


Q ss_pred             ccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEecCCCCceEEEE
Q 017476          296 LALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTG  368 (371)
Q Consensus       296 ~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a  368 (371)
                      .||+||.+|++.++.+++.+.++|+|||++++|+ +..|. .+.+++.+   .+|.-.+.  ...|..+|+..
T Consensus       230 ~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~-g~~~~-~~~~~~~~---~~~~~~~~--~~~~~~~~~~~  295 (307)
T PRK11805        230 LALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV-GNSRV-HLEEAYPD---VPFTWLEF--ENGGDGVFLLT  295 (307)
T ss_pred             ceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE-CcCHH-HHHHHHhh---CCCEEEEe--cCCCceEEEEE
Confidence            9999999999999999999999999999999999 45565 58888875   44544333  33555555543

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=100.00  E-value=2.8e-41  Score=323.38  Aligned_cols=265  Identities=30%  Similarity=0.420  Sum_probs=213.7

Q ss_pred             HHHHHHHHHHHHhhhccccccCCCCCCCccchHHHHHHHHHhccCCCCCcccccccCCccccccCchHHHHHHHHHHHhh
Q 017476           65 DLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIE  144 (371)
Q Consensus        65 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~  144 (371)
                      ++.++++|+......++..+.   .+.++  ...|++||++++++.++....+    . .+..++.+..+.+..+.+||.
T Consensus         3 ~~~~~~~~~~~~l~~~~~~~~---~~~~~--~~~~a~~ll~~~l~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~rr~   72 (284)
T TIGR03533         3 TIRDFLRWAVSRFNAAGLFFG---HGTDN--AWDEAVYLVLHALHLPLDILEP----F-LDARLTPSEKERILELIERRI   72 (284)
T ss_pred             cHHHHHHHHHHHHHhcCCccc---CCCCC--HHHHHHHHHHHHHCcCHHHHhh----c-ccCCCCHHHHHHHHHHHHHHH
Confidence            456677777666554332110   00011  1368999999999987543321    1 123566666666777777876


Q ss_pred             -cCCceeeEeecccccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEE
Q 017476          145 -KRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSI  223 (371)
Q Consensus       145 -~~~P~~yi~g~~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V  223 (371)
                       +++|+|||+|+++|++++|.|+++||+||++|+.+++..+.....   ...+.+|||+|||+|++++.+++.. ++.+|
T Consensus        73 ~~~~Pl~yi~g~~~f~g~~f~v~~~vlipr~~te~lv~~~l~~~~~---~~~~~~vLDlG~GsG~i~~~la~~~-~~~~v  148 (284)
T TIGR03533        73 EERIPVAYLTNEAWFAGLEFYVDERVLIPRSPIAELIEDGFAPWLE---PEPVKRILDLCTGSGCIAIACAYAF-PEAEV  148 (284)
T ss_pred             hCCCcHHHHcCCCeecCcEEEECCCCccCCCchHHHHHHHHHHHhc---cCCCCEEEEEeCchhHHHHHHHHHC-CCCEE
Confidence             799999999999999999999999999999999999987753211   1234689999999999999999985 77899


Q ss_pred             EEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCC
Q 017476          224 IAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVD  303 (371)
Q Consensus       224 ~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~d  303 (371)
                      +|+|+|+.+++.|++|++.+++.++++++++|+++.++  .++||+|++||||++..++..++.++ .|||..|++||.+
T Consensus       149 ~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~--~~~fD~Iv~NPPy~~~~~~~~l~~~~-~~ep~~al~gg~d  225 (284)
T TIGR03533       149 DAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP--GRKYDLIVSNPPYVDAEDMADLPAEY-HHEPELALASGED  225 (284)
T ss_pred             EEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC--CCCccEEEECCCCCCccchhhCCHhh-hcCHHHHhcCCCc
Confidence            99999999999999999999998789999999987654  25799999999999998888888887 6999999999999


Q ss_pred             cHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCce
Q 017476          304 GLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFC  351 (371)
Q Consensus       304 Gl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~  351 (371)
                      |++.++.+++.+.++|+|||++++|+ +..| +.+++++.+   .+|.
T Consensus       226 Gl~~~~~il~~a~~~L~~gG~l~~e~-g~~~-~~v~~~~~~---~~~~  268 (284)
T TIGR03533       226 GLDLVRRILAEAADHLNENGVLVVEV-GNSM-EALEEAYPD---VPFT  268 (284)
T ss_pred             HHHHHHHHHHHHHHhcCCCCEEEEEE-CcCH-HHHHHHHHh---CCCc
Confidence            99999999999999999999999999 4566 689999885   4563

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=100.00  E-value=6.7e-41  Score=318.26  Aligned_cols=273  Identities=37%  Similarity=0.503  Sum_probs=230.4

Q ss_pred             HHHHHHHHHHHHhhhccccccCCCCCCCccchHHHHHHHHHhccCCCCCcccccccCCccccccCchHHHHHHHHHHHhh
Q 017476           65 DLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIE  144 (371)
Q Consensus        65 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~  144 (371)
                      ++.++.+|+......                ...|+++|++++++.+.....+.     .+..++.+..+.+..+..|+.
T Consensus         3 ~~~~~~~~~~~~l~~----------------~~~~~~~ll~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~   61 (275)
T PRK09328          3 TIAEALREATARLAS----------------PRLDAELLLAHVLGLSRTDLLLN-----PEEELTPEELERFRALVARRA   61 (275)
T ss_pred             cHHHHHHHHHHHHhC----------------cHHHHHHHHHHHHCcCHHHHhhc-----ccCCCCHHHHHHHHHHHHHHH
Confidence            356777887665431                13689999999999875333211     122344444455666667778


Q ss_pred             cCCceeeEeecccccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEE
Q 017476          145 KRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSII  224 (371)
Q Consensus       145 ~~~P~~yi~g~~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~  224 (371)
                      +++|++|++|..+|++..|.+++++++||++|+.+++.+....    ...++.+|||+|||+|.+++.++..+ +..+|+
T Consensus        62 ~~~p~~~i~g~~~f~~~~~~~~~~~lipr~~te~l~~~~~~~~----~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~  136 (275)
T PRK09328         62 AGEPLQYILGEAEFWGLDFKVSPGVLIPRPETEELVEWALEAL----LLKEPLRVLDLGTGSGAIALALAKER-PDAEVT  136 (275)
T ss_pred             cCCCHHHHceeceEcCcEEEECCCceeCCCCcHHHHHHHHHhc----cccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEE
Confidence            9999999999999999999999999999999999999988554    22345689999999999999999986 778999


Q ss_pred             EEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCc
Q 017476          225 AVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDG  304 (371)
Q Consensus       225 gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dG  304 (371)
                      |+|+|+.+++.|++|+. ++...+++++.+|+++...  .++||+|++||||++......+.+++..|||..++++|.+|
T Consensus       137 ~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~~~--~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g  213 (275)
T PRK09328        137 AVDISPEALAVARRNAK-HGLGARVEFLQGDWFEPLP--GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDG  213 (275)
T ss_pred             EEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCcCC--CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCH
Confidence            99999999999999998 4444569999999987654  36899999999999988888888999899999999999999


Q ss_pred             HHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEecCCCCceEEEEEe
Q 017476          305 LDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFR  370 (371)
Q Consensus       305 l~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~~  370 (371)
                      ++.++.+++.+.++|+|||++++|+ +..|.+.+.+++++   .||..+++++|++|++|++++++
T Consensus       214 ~~~~~~~~~~~~~~Lk~gG~l~~e~-g~~~~~~~~~~l~~---~gf~~v~~~~d~~~~~r~~~~~~  275 (275)
T PRK09328        214 LDFYRRIIEQAPRYLKPGGWLLLEI-GYDQGEAVRALLAA---AGFADVETRKDLAGRDRVVLGRR  275 (275)
T ss_pred             HHHHHHHHHHHHHhcccCCEEEEEE-CchHHHHHHHHHHh---CCCceeEEecCCCCCceEEEEEC
Confidence            9999999999999999999999999 67899999999985   78999999999999999999864

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=100.00  E-value=7e-39  Score=301.63  Aligned_cols=228  Identities=30%  Similarity=0.482  Sum_probs=198.2

Q ss_pred             HHHHHHHHHhccCCCCCcccccccCCccccccCchHHHHHHHHHHHhhcCCceeeEeecccccceeeEeeCCcccccchH
Q 017476           97 FRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPET  176 (371)
Q Consensus        97 ~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~P~~yi~g~~~f~~~~~~v~~~vliPrp~t  176 (371)
                      ..|++||++++..                       ...+..|.+||.+++|+|||+|.++|++++|.+++++|+||++|
T Consensus        14 ~~~a~~l~~~~~~-----------------------~~~~~~~~~rr~~~~Pl~yi~g~~~f~g~~~~v~~~vf~pr~~T   70 (251)
T TIGR03704        14 EDEAALLVDAART-----------------------PGELAAMVDRRVAGLPLEHVLGWAEFCGLRIAVDPGVFVPRRRT   70 (251)
T ss_pred             HHHHHHHHHhccC-----------------------HHHHHHHHHHHHcCCCHHHhcccCeEcCeEEEECCCCcCCCccH
Confidence            3899999999731                       24466777888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCc
Q 017476          177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSW  256 (371)
Q Consensus       177 e~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~  256 (371)
                      +.+++.++..+ ..  ...+.+|||+|||+|.+++.+++.+ ++.+|+|+|+|+.+++.|++|+..++    ++++++|+
T Consensus        71 e~Lv~~~l~~~-~~--~~~~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~  142 (251)
T TIGR03704        71 EFLVDEAAALA-RP--RSGTLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLADAG----GTVHEGDL  142 (251)
T ss_pred             HHHHHHHHHhh-cc--cCCCCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeec
Confidence            99999998865 21  1123589999999999999999875 67799999999999999999998876    47899999


Q ss_pred             cccccc-CCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcH
Q 017476          257 FGKLKD-VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQC  335 (371)
Q Consensus       257 ~~~l~~-~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~  335 (371)
                      ++.+.. ..++||+||+||||++...+..+++++.+|||..+|+||.||++.++.+++.+.++|+|||++++++ +.+|.
T Consensus       143 ~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~-~~~~~  221 (251)
T TIGR03704       143 YDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET-SERQA  221 (251)
T ss_pred             hhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE-CcchH
Confidence            876532 2357999999999999988888899999999999999999999999999999999999999999999 57899


Q ss_pred             HHHHHHHhccccCCc-eeEEEEecC
Q 017476          336 KFLKNYLENDSACSF-CNVSIVSDF  359 (371)
Q Consensus       336 ~~v~~~l~~~~~~gf-~~v~~~~Dl  359 (371)
                      ..+..++++   .|| ..+..++|+
T Consensus       222 ~~v~~~l~~---~g~~~~~~~~~~~  243 (251)
T TIGR03704       222 PLAVEAFAR---AGLIARVASSEEL  243 (251)
T ss_pred             HHHHHHHHH---CCCCceeeEcccc
Confidence            999999986   455 467778887

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=100.00  E-value=2.4e-35  Score=275.96  Aligned_cols=251  Identities=37%  Similarity=0.554  Sum_probs=217.7

Q ss_pred             HHHHHHHhccCCCCCcccccccCCccccccCchHHHHHHHHHHHhhcCCceeeEeecccccceeeEeeCCcccccchHHH
Q 017476           99 ELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETEL  178 (371)
Q Consensus        99 e~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~P~~yi~g~~~f~~~~~~v~~~vliPrp~te~  178 (371)
                      |+++|+++.++........    . ....+.....+.+..+.+++.+++|++|++|..+|++..|.+++++++|+++++.
T Consensus         1 ~~~~~l~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~p~~~~~~   75 (251)
T TIGR03534         1 DAELLLAHVLGKDRTDLLL----H-PEKELTPEELARFEALLARRAKGEPVAYILGEREFYGLDFKVSPGVLIPRPDTEE   75 (251)
T ss_pred             CHHHHHHHHHCcCHHHHhh----c-ccCCCCHHHHHHHHHHHHHHHcCCCHHHHcccceEeceEEEECCCcccCCCChHH
Confidence            4678999999976421111    0 1234555556667777788889999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccc
Q 017476          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG  258 (371)
Q Consensus       179 lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~  258 (371)
                      +++.+++.+ .    ..+.+|||+|||+|.++..+++.+ +..+++|+|+++.+++.|++|+..+++. +++++++|+.+
T Consensus        76 l~~~~l~~~-~----~~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~  148 (251)
T TIGR03534        76 LVEAALERL-K----KGPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFE  148 (251)
T ss_pred             HHHHHHHhc-c----cCCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhc
Confidence            999988876 2    134589999999999999999975 7789999999999999999999999886 59999999987


Q ss_pred             ccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHH
Q 017476          259 KLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFL  338 (371)
Q Consensus       259 ~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v  338 (371)
                      ...  .++||+|++||||+...+...+..++..|||..++.+|.+|+..+..+++.+.++|+|||++++++ +..+.+.+
T Consensus       149 ~~~--~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~-~~~~~~~~  225 (251)
T TIGR03534       149 PLP--GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI-GYDQGEAV  225 (251)
T ss_pred             cCc--CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE-CccHHHHH
Confidence            553  378999999999999888888888898999999999999999999999999999999999999999 67899999


Q ss_pred             HHHHhccccCCceeEEEEecCCCCceEEE
Q 017476          339 KNYLENDSACSFCNVSIVSDFAGIQRFVT  367 (371)
Q Consensus       339 ~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~  367 (371)
                      .+++++   .||..+++++|+.|.+|+++
T Consensus       226 ~~~l~~---~gf~~v~~~~d~~~~~r~~~  251 (251)
T TIGR03534       226 RALFEA---AGFADVETRKDLAGKDRVVL  251 (251)
T ss_pred             HHHHHh---CCCCceEEEeCCCCCcCeeC
Confidence            999986   68999999999999999974

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PLN02672 methionine S-methyltransferase

Probab=100.00  E-value=4.7e-33  Score=301.48  Aligned_cols=197  Identities=23%  Similarity=0.297  Sum_probs=170.7

Q ss_pred             eecccccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHH
Q 017476          153 VGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLA  232 (371)
Q Consensus       153 ~g~~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~a  232 (371)
                      .|.++|++++|.|+|+||||||+||.+++. +... . ....++.+|||+|||+|++++.+++++ +..+|+|+|+|++|
T Consensus        79 ~G~~~F~~l~~~V~p~VLIPRpeTE~lve~-L~~~-~-~~~~~~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~A  154 (1082)
T PLN02672         79 EGFRNRKKLTMMEIPSIFIPEDWSFTFYEG-LNRH-P-DSIFRDKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRA  154 (1082)
T ss_pred             CCeEEecCCceeeCCCcccCchhHHHHHHH-HHhc-c-cccCCCCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHH
Confidence            588999999999999999999999999998 4332 1 111235689999999999999999986 67899999999999


Q ss_pred             HHHHHHHHHHcCCC---------------CcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCc---
Q 017476          233 AAVAAFNAQRYGLQ---------------DIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEP---  294 (371)
Q Consensus       233 l~~A~~n~~~~gl~---------------~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep---  294 (371)
                      ++.|++|++.++++               ++++++++|+++.+....++||+||||||||+..++..++++|..|||   
T Consensus       155 l~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~  234 (1082)
T PLN02672        155 VKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEF  234 (1082)
T ss_pred             HHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhcccccc
Confidence            99999999987542               479999999998764322479999999999999999999999988875   


Q ss_pred             ------cccccC---CCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHH-HHHhccccCCceeEEEEe
Q 017476          295 ------RLALDG---GVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLK-NYLENDSACSFCNVSIVS  357 (371)
Q Consensus       295 ------~~aL~g---g~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~-~~l~~~~~~gf~~v~~~~  357 (371)
                            ..||+|   |.|||+.|+++++.+.++|+|||++++|+ |.+|++.|. +++++   .||..+++++
T Consensus       235 ~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi-G~~q~~~v~~~l~~~---~gf~~~~~~~  303 (1082)
T PLN02672        235 LYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM-GGRPGQAVCERLFER---RGFRITKLWQ  303 (1082)
T ss_pred             ccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE-CccHHHHHHHHHHHH---CCCCeeEEee
Confidence                  689987   49999999999999999999999999999 789999999 69986   6798877765

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.91  E-value=5.3e-23  Score=182.73  Aligned_cols=161  Identities=37%  Similarity=0.586  Sum_probs=126.4

Q ss_pred             eeeEeeCCccccc---chHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 017476          161 LVLSVEEGVFIPR---PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA  237 (371)
Q Consensus       161 ~~~~v~~~vliPr---p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~  237 (371)
                      ++|...+|||.|+   +.|+.|++.+...        ..++|||+|||+|.+++.+++.. +..+|+++|+|+.|++.|+
T Consensus         2 ~~~~~~~gvFs~~~~d~~t~lL~~~l~~~--------~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~   72 (170)
T PF05175_consen    2 LEFITHPGVFSPPRLDAGTRLLLDNLPKH--------KGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAK   72 (170)
T ss_dssp             EEEEEETTSTTTTSHHHHHHHHHHHHHHH--------TTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHH
T ss_pred             EEEEECCCeeCCCCCCHHHHHHHHHHhhc--------cCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHH
Confidence            5788999999954   5788888877654        25689999999999999999974 7889999999999999999


Q ss_pred             HHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhc
Q 017476          238 FNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTAS  317 (371)
Q Consensus       238 ~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~  317 (371)
                      +|++.+++++ ++++.+|+++.+.  .++||+|+||||+..                     ++.+|++.++.+++.+.+
T Consensus        73 ~n~~~n~~~~-v~~~~~d~~~~~~--~~~fD~Iv~NPP~~~---------------------~~~~~~~~~~~~i~~a~~  128 (170)
T PF05175_consen   73 RNAERNGLEN-VEVVQSDLFEALP--DGKFDLIVSNPPFHA---------------------GGDDGLDLLRDFIEQARR  128 (170)
T ss_dssp             HHHHHTTCTT-EEEEESSTTTTCC--TTCEEEEEE---SBT---------------------TSHCHHHHHHHHHHHHHH
T ss_pred             HHHHhcCccc-ccccccccccccc--ccceeEEEEccchhc---------------------ccccchhhHHHHHHHHHH
Confidence            9999999988 9999999998776  479999999999532                     334578889999999999


Q ss_pred             ccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEecCCC
Q 017476          318 MLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAG  361 (371)
Q Consensus       318 ~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g  361 (371)
                      +|+|||.+++........+.+   +++    .|..+++...-.|
T Consensus       129 ~Lk~~G~l~lv~~~~~~~~~~---l~~----~f~~~~~~~~~~~  165 (170)
T PF05175_consen  129 YLKPGGRLFLVINSHLGYERL---LKE----LFGDVEVVAKNKG  165 (170)
T ss_dssp             HEEEEEEEEEEEETTSCHHHH---HHH----HHS--EEEEEESS
T ss_pred             hccCCCEEEEEeecCCChHHH---HHH----hcCCEEEEEECCC
Confidence            999999998887543333333   443    2667777665443

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK14967 putative methyltransferase; Provisional

Probab=99.88  E-value=3.3e-21  Score=178.41  Aligned_cols=175  Identities=29%  Similarity=0.408  Sum_probs=142.5

Q ss_pred             ccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 017476          158 WRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA  237 (371)
Q Consensus       158 f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~  237 (371)
                      +-+..+.+.+++|.|+.+++.+.+.+...-     ..++.+|||+|||+|.+++.+++.  ...+|+++|+|+.+++.|+
T Consensus         4 ~~~~~~~~~~g~~~p~~ds~~l~~~l~~~~-----~~~~~~vLDlGcG~G~~~~~la~~--~~~~v~~vD~s~~~l~~a~   76 (223)
T PRK14967          4 TPPDALLRAPGVYRPQEDTQLLADALAAEG-----LGPGRRVLDLCTGSGALAVAAAAA--GAGSVTAVDISRRAVRSAR   76 (223)
T ss_pred             CCCceeecCCCCcCCCCcHHHHHHHHHhcc-----cCCCCeEEEecCCHHHHHHHHHHc--CCCeEEEEECCHHHHHHHH
Confidence            346788999999999999999888765431     224569999999999999999884  3459999999999999999


Q ss_pred             HHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhc
Q 017476          238 FNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTAS  317 (371)
Q Consensus       238 ~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~  317 (371)
                      +|+..+++  ++.++.+|+.+.+.  .++||+|++||||++.....     .....|..++.++.+|...+..+++.+.+
T Consensus        77 ~n~~~~~~--~~~~~~~d~~~~~~--~~~fD~Vi~npPy~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~a~~  147 (223)
T PRK14967         77 LNALLAGV--DVDVRRGDWARAVE--FRPFDVVVSNPPYVPAPPDA-----PPSRGPARAWDAGPDGRAVLDRLCDAAPA  147 (223)
T ss_pred             HHHHHhCC--eeEEEECchhhhcc--CCCeeEEEECCCCCCCCccc-----ccccChhHhhhCCCcHHHHHHHHHHHHHH
Confidence            99998886  38999999977543  36899999999998765422     22456777888899999999999999999


Q ss_pred             ccccCcEEEEEECCcCcHHHHHHHHhccccCCce
Q 017476          318 MLKPGGFFAFETNGEKQCKFLKNYLENDSACSFC  351 (371)
Q Consensus       318 ~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~  351 (371)
                      +|++||.+++......+...+.+.+++   .+|.
T Consensus       148 ~Lk~gG~l~~~~~~~~~~~~~~~~l~~---~g~~  178 (223)
T PRK14967        148 LLAPGGSLLLVQSELSGVERTLTRLSE---AGLD  178 (223)
T ss_pred             hcCCCcEEEEEEecccCHHHHHHHHHH---CCCC
Confidence            999999999987655566777777775   5663

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.87  E-value=1.2e-20  Score=168.69  Aligned_cols=163  Identities=23%  Similarity=0.334  Sum_probs=129.4

Q ss_pred             cccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCc
Q 017476          169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDI  248 (371)
Q Consensus       169 vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~  248 (371)
                      ||+||++|..+.+.+. ..       ++.+|||+|||+|.++..+++..   .+|+|+|+|+.+++.|++|+..++.  +
T Consensus         1 ~~~~~~d~~~l~~~l~-~~-------~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~--~   67 (179)
T TIGR00537         1 VYEPAEDSLLLEANLR-EL-------KPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV--G   67 (179)
T ss_pred             CCCCCccHHHHHHHHH-hc-------CCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC--c
Confidence            6899999977666543 22       34689999999999999999862   3899999999999999999998876  3


Q ss_pred             EEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476          249 IEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE  328 (371)
Q Consensus       249 v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle  328 (371)
                      ++++.+|+.+..   .++||+|++||||++..+....     ......++.+|.+|...+..+++.+.++|+|||.+++.
T Consensus        68 ~~~~~~d~~~~~---~~~fD~Vi~n~p~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~  139 (179)
T TIGR00537        68 LDVVMTDLFKGV---RGKFDVILFNPPYLPLEDDLRR-----GDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLI  139 (179)
T ss_pred             eEEEEccccccc---CCcccEEEECCCCCCCcchhcc-----cchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEE
Confidence            899999987743   2589999999999865432110     11224567788889999999999999999999999998


Q ss_pred             ECCcCcHHHHHHHHhccccCCceeEEE
Q 017476          329 TNGEKQCKFLKNYLENDSACSFCNVSI  355 (371)
Q Consensus       329 ~~~~~q~~~v~~~l~~~~~~gf~~v~~  355 (371)
                      .....+...+.+.+++   .||....+
T Consensus       140 ~~~~~~~~~~~~~l~~---~gf~~~~~  163 (179)
T TIGR00537       140 QSSLNGEPDTFDKLDE---RGFRYEIV  163 (179)
T ss_pred             EeccCChHHHHHHHHh---CCCeEEEE
Confidence            8666668889999986   67844333

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.85  E-value=1.2e-20  Score=175.31  Aligned_cols=165  Identities=24%  Similarity=0.350  Sum_probs=129.4

Q ss_pred             ceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 017476          160 DLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN  239 (371)
Q Consensus       160 ~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n  239 (371)
                      .+.+..++.++-..-++-+|..++..        ...++|||+|||+|.+++.+|++. +.++|+|||+++++.+.|++|
T Consensus        17 ~~~I~q~~~~~~~~~DaiLL~~~~~~--------~~~~~IlDlGaG~G~l~L~la~r~-~~a~I~~VEiq~~~a~~A~~n   87 (248)
T COG4123          17 QFFIIQDRCGFRYGTDAILLAAFAPV--------PKKGRILDLGAGNGALGLLLAQRT-EKAKIVGVEIQEEAAEMAQRN   87 (248)
T ss_pred             ceEEEeCCCccccccHHHHHHhhccc--------ccCCeEEEecCCcCHHHHHHhccC-CCCcEEEEEeCHHHHHHHHHH
Confidence            44556666677777777777766432        126799999999999999999985 669999999999999999999


Q ss_pred             HHHcCCCCcEEEEEcCcccccccC-CCceeEEEEcCCCCCCCCc--ccchhhhcccCccccccCCCCcHHHHHHHHHHHh
Q 017476          240 AQRYGLQDIIEIRQGSWFGKLKDV-EGKLSGVVSNPPYIPSDDI--SGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTA  316 (371)
Q Consensus       240 ~~~~gl~~~v~~~~gD~~~~l~~~-~~~fDlIvsNPPYi~~~~~--~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~  316 (371)
                      ++.++++++++++++|+.+..+.. ..+||+|||||||...+..  ..-.....+||...-          +..+++.+.
T Consensus        88 v~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~----------le~~i~~a~  157 (248)
T COG4123          88 VALNPLEERIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLD----------LEDLIRAAA  157 (248)
T ss_pred             HHhCcchhceeEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCC----------HHHHHHHHH
Confidence            999999999999999987655443 2469999999999987665  222234445655433          448999999


Q ss_pred             cccccCcEEEEEECCcCcHHHHHHHHhc
Q 017476          317 SMLKPGGFFAFETNGEKQCKFLKNYLEN  344 (371)
Q Consensus       317 ~~LkpgG~lvle~~~~~q~~~v~~~l~~  344 (371)
                      +.||+||.+++.+ ......++.+++++
T Consensus       158 ~~lk~~G~l~~V~-r~erl~ei~~~l~~  184 (248)
T COG4123         158 KLLKPGGRLAFVH-RPERLAEIIELLKS  184 (248)
T ss_pred             HHccCCCEEEEEe-cHHHHHHHHHHHHh
Confidence            9999999999999 45666777777775

>PRK14968 putative methyltransferase; Provisional

Probab=99.84  E-value=1.7e-19  Score=161.20  Aligned_cols=181  Identities=24%  Similarity=0.412  Sum_probs=144.6

Q ss_pred             eCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC
Q 017476          166 EEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGL  245 (371)
Q Consensus       166 ~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl  245 (371)
                      ++++|.|+.++..+++.+..        .++.+|||+|||+|.++..+++.   +.+|+|+|+|+++++.+++|+..++.
T Consensus         2 ~~~~~~p~~~~~~l~~~~~~--------~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~   70 (188)
T PRK14968          2 NDEVYEPAEDSFLLAENAVD--------KKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNI   70 (188)
T ss_pred             CCcccCcchhHHHHHHhhhc--------cCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCC
Confidence            57899999999988887643        23568999999999999999985   47999999999999999999998887


Q ss_pred             CCc-EEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcE
Q 017476          246 QDI-IEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGF  324 (371)
Q Consensus       246 ~~~-v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~  324 (371)
                      .++ +.++.+|+.+.+..  ++||+|++||||.+.........     ....++.+|.+|...+..+++.+.++|+|||.
T Consensus        71 ~~~~~~~~~~d~~~~~~~--~~~d~vi~n~p~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~  143 (188)
T PRK14968         71 RNNGVEVIRSDLFEPFRG--DKFDVILFNPPYLPTEEEEEWDD-----WLNYALSGGKDGREVIDRFLDEVGRYLKPGGR  143 (188)
T ss_pred             CCcceEEEeccccccccc--cCceEEEECCCcCCCCchhhhhh-----hhhhhhccCcChHHHHHHHHHHHHHhcCCCeE
Confidence            655 89999999876543  48999999999987543222111     12346667888899999999999999999999


Q ss_pred             EEEEECCcCcHHHHHHHHhccccCCceeEEEEecCCCCceEEE
Q 017476          325 FAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVT  367 (371)
Q Consensus       325 lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~  367 (371)
                      +++.+......+.+.+++.+   .||..+.+.....+.+++.+
T Consensus       144 ~~~~~~~~~~~~~l~~~~~~---~g~~~~~~~~~~~~~~~~~~  183 (188)
T PRK14968        144 ILLLQSSLTGEDEVLEYLEK---LGFEAEVVAEEKFPFEELIV  183 (188)
T ss_pred             EEEEEcccCCHHHHHHHHHH---CCCeeeeeeecccCCceEEE
Confidence            99998665667788888886   68977777666666666554

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.83  E-value=1.9e-19  Score=157.39  Aligned_cols=186  Identities=24%  Similarity=0.373  Sum_probs=153.2

Q ss_pred             CCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC
Q 017476          167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ  246 (371)
Q Consensus       167 ~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~  246 (371)
                      .+|+-|-.+|-+|+|.+.+.. .......+..++|+|||||..+..+++...+++...++|+|+.|++..++.++.|+..
T Consensus        16 ~dVYEPaEDTFlLlDaLekd~-~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~   94 (209)
T KOG3191|consen   16 SDVYEPAEDTFLLLDALEKDA-AELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH   94 (209)
T ss_pred             hhccCccchhhHHHHHHHHHH-HHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc
Confidence            378899999999999887765 3323334678999999999999999999888899999999999999999999998863


Q ss_pred             CcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEE
Q 017476          247 DIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFA  326 (371)
Q Consensus       247 ~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lv  326 (371)
                        +..++.|+.+.+..  ++.|+++.||||++..+-.     +....-..++.||.+|.+...+++.+....|.|.|+++
T Consensus        95 --~~~V~tdl~~~l~~--~~VDvLvfNPPYVpt~~~~-----i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Y  165 (209)
T KOG3191|consen   95 --IDVVRTDLLSGLRN--ESVDVLVFNPPYVPTSDEE-----IGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFY  165 (209)
T ss_pred             --cceeehhHHhhhcc--CCccEEEECCCcCcCCccc-----chhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEE
Confidence              89999999988876  8999999999999986632     21222346788999999999999999999999999999


Q ss_pred             EEECCcCcHHHHHHHHhccccCCceeEEEEecCCCCceE
Q 017476          327 FETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRF  365 (371)
Q Consensus       327 le~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~  365 (371)
                      +..-.....+++.++++.   .||....+..-..|.+-.
T Consensus       166 lv~~~~N~p~ei~k~l~~---~g~~~~~~~~Rk~~~E~l  201 (209)
T KOG3191|consen  166 LVALRANKPKEILKILEK---KGYGVRIAMQRKAGGETL  201 (209)
T ss_pred             eeehhhcCHHHHHHHHhh---cccceeEEEEEecCCceE
Confidence            987666677788888885   678776666666665543

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.82  E-value=5.1e-19  Score=167.59  Aligned_cols=170  Identities=22%  Similarity=0.378  Sum_probs=132.0

Q ss_pred             cceeeEeeCCcccc---cchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 017476          159 RDLVLSVEEGVFIP---RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAV  235 (371)
Q Consensus       159 ~~~~~~v~~~vliP---rp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~  235 (371)
                      .++.|.-.||||.-   -..|++|++.+...        ...+|||+|||.|.+++.+++.. |..+++-+|+|..|++.
T Consensus       127 ~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~--------~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~  197 (300)
T COG2813         127 HELTFKTLPGVFSRDKLDKGSRLLLETLPPD--------LGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVES  197 (300)
T ss_pred             CceEEEeCCCCCcCCCcChHHHHHHHhCCcc--------CCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHH
Confidence            36788899999984   36678887765432        23489999999999999999985 89999999999999999


Q ss_pred             HHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHH
Q 017476          236 AAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGT  315 (371)
Q Consensus       236 A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a  315 (371)
                      |++|+..|++++. .++.+|.++...   ++||+|||||||....+..                     .+.-.++++.|
T Consensus       198 ar~Nl~~N~~~~~-~v~~s~~~~~v~---~kfd~IisNPPfh~G~~v~---------------------~~~~~~~i~~A  252 (300)
T COG2813         198 ARKNLAANGVENT-EVWASNLYEPVE---GKFDLIISNPPFHAGKAVV---------------------HSLAQEIIAAA  252 (300)
T ss_pred             HHHhHHHcCCCcc-EEEEeccccccc---ccccEEEeCCCccCCcchh---------------------HHHHHHHHHHH
Confidence            9999999998864 899999988765   4999999999997433211                     23345899999


Q ss_pred             hcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEecCCCCceEEEEEe
Q 017476          316 ASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFR  370 (371)
Q Consensus       316 ~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~~  370 (371)
                      .++|++||.|.+..++.-..   ...|++    -|.++++..- .+.-++..++|
T Consensus       253 ~~~L~~gGeL~iVan~~l~y---~~~L~~----~Fg~v~~la~-~~gf~Vl~a~k  299 (300)
T COG2813         253 ARHLKPGGELWIVANRHLPY---EKKLKE----LFGNVEVLAK-NGGFKVLRAKK  299 (300)
T ss_pred             HHhhccCCEEEEEEcCCCCh---HHHHHH----hcCCEEEEEe-CCCEEEEEEec
Confidence            99999999999999755443   445553    3777777763 34455555554

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=99.81  E-value=1.4e-18  Score=168.20  Aligned_cols=206  Identities=18%  Similarity=0.255  Sum_probs=148.2

Q ss_pred             cceee-EeeCCccccc-chHHHHHHHHHHHhhhcC----CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHH
Q 017476          159 RDLVL-SVEEGVFIPR-PETELMVDLVSDVLVRDN----DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLA  232 (371)
Q Consensus       159 ~~~~~-~v~~~vliPr-p~te~lv~~~~~~~~~~~----~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~a  232 (371)
                      +++++ .+.++.|.|. |.--.++.++.+.+....    ......++||||||+|++...++... ++++++|+|+++.+
T Consensus        72 ygl~~wdip~~~LcPpiP~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~A  150 (321)
T PRK11727         72 YGVAHWDIPAGYLCPPIPGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQA  150 (321)
T ss_pred             cCCCcccCCCCCcCCCCCcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHH
Confidence            46764 6888999986 767777777777762211    11235789999999999999998875 68899999999999


Q ss_pred             HHHHHHHHHHc-CCCCcEEEEE-c---CcccccccCCCceeEEEEcCCCCCCCCcccc--hh---hhcccCcc---c---
Q 017476          233 AAVAAFNAQRY-GLQDIIEIRQ-G---SWFGKLKDVEGKLSGVVSNPPYIPSDDISGL--QV---EVGKHEPR---L---  296 (371)
Q Consensus       233 l~~A~~n~~~~-gl~~~v~~~~-g---D~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l--~~---ev~~~ep~---~---  296 (371)
                      ++.|++|++.+ ++.++++++. .   ++++.+....++||+|+|||||+........  ..   ...+|.+.   +   
T Consensus       151 l~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~  230 (321)
T PRK11727        151 LASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFG  230 (321)
T ss_pred             HHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCc
Confidence            99999999999 8998898865 3   3333322224689999999999976553211  11   11222220   1   


Q ss_pred             ----c--ccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEecCCC-CceEEEEE
Q 017476          297 ----A--LDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAG-IQRFVTGF  369 (371)
Q Consensus       297 ----a--L~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g-~~R~~~a~  369 (371)
                          .  -.||+  +.++..++++...+++..|++..-++.....+.+.+.|++   .|..++++..-..| +.|.++|+
T Consensus       231 g~~~EL~~~GGe--~~fi~~mi~eS~~~~~~~gwftsmv~kk~~l~~l~~~L~~---~~~~~~~~~e~~qG~~~~~~vaW  305 (321)
T PRK11727        231 GQQAELWCEGGE--VAFIKRMIEESKAFAKQVLWFTSLVSKKENLPPLYRALKK---VGAVEVKTIEMAQGQKQSRFIAW  305 (321)
T ss_pred             chhhheeeCCcE--eeeehHhhHHHHHHHhhCcEEEEEeeccCCHHHHHHHHHH---cCCceEEEEEEeCCCeeeEEEEe
Confidence                1  13444  5788899999999999999998888777788889999986   67777777765545 55566776


Q ss_pred             e
Q 017476          370 R  370 (371)
Q Consensus       370 ~  370 (371)
                      .
T Consensus       306 s  306 (321)
T PRK11727        306 T  306 (321)
T ss_pred             e
Confidence            3

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.80  E-value=2.4e-18  Score=170.27  Aligned_cols=139  Identities=19%  Similarity=0.299  Sum_probs=110.5

Q ss_pred             ceeeEeeCCccccc---chHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 017476          160 DLVLSVEEGVFIPR---PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA  236 (371)
Q Consensus       160 ~~~~~v~~~vliPr---p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A  236 (371)
                      ++.+...++||-..   ..|+.+++.+..        ...++|||+|||+|.+++.+++.. |..+|+++|+|+.|++.|
T Consensus       198 ~~~~~~~~gVFs~~~LD~GtrllL~~lp~--------~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A  268 (378)
T PRK15001        198 DWTIHNHANVFSRTGLDIGARFFMQHLPE--------NLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASS  268 (378)
T ss_pred             eEEEEecCCccCCCCcChHHHHHHHhCCc--------ccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHH
Confidence            56778889999964   447776665422        123589999999999999999985 889999999999999999


Q ss_pred             HHHHHHcCCC--CcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHH
Q 017476          237 AFNAQRYGLQ--DIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNG  314 (371)
Q Consensus       237 ~~n~~~~gl~--~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~  314 (371)
                      ++|++.++..  .+++++.+|.++.+..  ++||+|+|||||.....+   .                  .....+++..
T Consensus       269 ~~N~~~n~~~~~~~v~~~~~D~l~~~~~--~~fDlIlsNPPfh~~~~~---~------------------~~ia~~l~~~  325 (378)
T PRK15001        269 RLNVETNMPEALDRCEFMINNALSGVEP--FRFNAVLCNPPFHQQHAL---T------------------DNVAWEMFHH  325 (378)
T ss_pred             HHHHHHcCcccCceEEEEEccccccCCC--CCEEEEEECcCcccCccC---C------------------HHHHHHHHHH
Confidence            9999988754  3689999998775532  589999999999753221   1                  1223478999


Q ss_pred             HhcccccCcEEEEEEC
Q 017476          315 TASMLKPGGFFAFETN  330 (371)
Q Consensus       315 a~~~LkpgG~lvle~~  330 (371)
                      +.++|+|||.++++.+
T Consensus       326 a~~~LkpGG~L~iV~n  341 (378)
T PRK15001        326 ARRCLKINGELYIVAN  341 (378)
T ss_pred             HHHhcccCCEEEEEEe
Confidence            9999999999999984

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.77  E-value=2.4e-17  Score=161.70  Aligned_cols=167  Identities=21%  Similarity=0.331  Sum_probs=123.5

Q ss_pred             ceeeEeeCCccccc---chHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 017476          160 DLVLSVEEGVFIPR---PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA  236 (371)
Q Consensus       160 ~~~~~v~~~vliPr---p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A  236 (371)
                      ++.+...|+||.+.   ..|+.+.+.+...        ..++|||+|||+|.+++.+++.. +..+|+++|+|+.|++.|
T Consensus       166 ~l~i~~~pgvFs~~~lD~gt~lLl~~l~~~--------~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A  236 (342)
T PRK09489        166 GLTVKTLPGVFSRDGLDVGSQLLLSTLTPH--------TKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESS  236 (342)
T ss_pred             CEEEEeCCCCCCCCCCCHHHHHHHHhcccc--------CCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHH
Confidence            46788889999863   4567776654321        24589999999999999999974 778999999999999999


Q ss_pred             HHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHh
Q 017476          237 AFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTA  316 (371)
Q Consensus       237 ~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~  316 (371)
                      ++|++.+++.  .+++.+|.++..   .++||+|||||||.....                     ...+....++..+.
T Consensus       237 ~~nl~~n~l~--~~~~~~D~~~~~---~~~fDlIvsNPPFH~g~~---------------------~~~~~~~~~i~~a~  290 (342)
T PRK09489        237 RATLAANGLE--GEVFASNVFSDI---KGRFDMIISNPPFHDGIQ---------------------TSLDAAQTLIRGAV  290 (342)
T ss_pred             HHHHHHcCCC--CEEEEccccccc---CCCccEEEECCCccCCcc---------------------ccHHHHHHHHHHHH
Confidence            9999999875  577888887643   368999999999964211                     12456678999999


Q ss_pred             cccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEecCCCCceEEEEE
Q 017476          317 SMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGF  369 (371)
Q Consensus       317 ~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~  369 (371)
                      ++|+|||.+++..+..-..+.   ++.+    .|..+++..+ .+...+..|+
T Consensus       291 ~~LkpgG~L~iVan~~l~y~~---~l~~----~Fg~~~~la~-~~~f~v~~a~  335 (342)
T PRK09489        291 RHLNSGGELRIVANAFLPYPD---LLDE----TFGSHEVLAQ-TGRFKVYRAI  335 (342)
T ss_pred             HhcCcCCEEEEEEeCCCChHH---HHHH----HcCCeEEEEe-CCCEEEEEEE
Confidence            999999999999865444443   3332    2556666553 3333444444

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.77  E-value=2.3e-18  Score=142.41  Aligned_cols=113  Identities=30%  Similarity=0.426  Sum_probs=90.7

Q ss_pred             CeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc-cCCCceeEEEEcCC
Q 017476          197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-DVEGKLSGVVSNPP  275 (371)
Q Consensus       197 ~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~-~~~~~fDlIvsNPP  275 (371)
                      .+|||+|||+|.+++.+++..  ..+++|+|+++.+++.|+.|+..+++.++++++++|+.+... ...++||+|++|||
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP   79 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP   79 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred             CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence            489999999999999999973  689999999999999999999999998889999999977542 22579999999999


Q ss_pred             CCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       276 Yi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      |..........                  -..+..+++.+.++|+|||.+++.+
T Consensus        80 ~~~~~~~~~~~------------------~~~~~~~~~~~~~~L~~gG~~~~~~  115 (117)
T PF13659_consen   80 YGPRSGDKAAL------------------RRLYSRFLEAAARLLKPGGVLVFIT  115 (117)
T ss_dssp             TTSBTT----G------------------GCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             Cccccccchhh------------------HHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            98642211100                  1145689999999999999999987

...

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.76  E-value=1.5e-17  Score=151.27  Aligned_cols=152  Identities=16%  Similarity=0.194  Sum_probs=113.2

Q ss_pred             CCceeeEeecccccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEE
Q 017476          146 RKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIA  225 (371)
Q Consensus       146 ~~P~~yi~g~~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~g  225 (371)
                      |.+.=||+|.. |++..+.+.++--. ||.++.+.+.+.+++..   ...+.+|||+|||+|.+++.++..  ...+|++
T Consensus         9 ~~~~mrIi~g~-~~g~~l~~~~~~~~-Rp~~d~v~e~l~~~l~~---~~~~~~vLDl~~GsG~l~l~~lsr--~a~~V~~   81 (199)
T PRK10909          9 GSGQIRIIGGQ-WRGRKLPVPDSPGL-RPTTDRVRETLFNWLAP---VIVDARCLDCFAGSGALGLEALSR--YAAGATL   81 (199)
T ss_pred             CCCCEEEEeec-cCCCEeCCCCCCCc-CcCCHHHHHHHHHHHhh---hcCCCEEEEcCCCccHHHHHHHHc--CCCEEEE
Confidence            33345788876 68999987554322 99999999988887721   124569999999999999976554  2469999


Q ss_pred             EeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcH
Q 017476          226 VDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGL  305 (371)
Q Consensus       226 vDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl  305 (371)
                      +|+++.+++.|++|++.+++. +++++++|+.+.+....++||+|++||||...     +.                   
T Consensus        82 vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~g-----~~-------------------  136 (199)
T PRK10909         82 LEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQPGTPHNVVFVDPPFRKG-----LL-------------------  136 (199)
T ss_pred             EECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhcCCCceEEEECCCCCCC-----hH-------------------
Confidence            999999999999999999976 59999999987654333579999999999531     10                   


Q ss_pred             HHHHHHHHHHhcccccCcEEEEEEC
Q 017476          306 DYLLHLCNGTASMLKPGGFFAFETN  330 (371)
Q Consensus       306 ~~~~~il~~a~~~LkpgG~lvle~~  330 (371)
                      ......+.. ..+|+++|++++|++
T Consensus       137 ~~~l~~l~~-~~~l~~~~iv~ve~~  160 (199)
T PRK10909        137 EETINLLED-NGWLADEALIYVESE  160 (199)
T ss_pred             HHHHHHHHH-CCCcCCCcEEEEEec
Confidence            111123322 356899999999995

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.76  E-value=5.5e-17  Score=164.80  Aligned_cols=169  Identities=20%  Similarity=0.192  Sum_probs=132.6

Q ss_pred             cCCceeeEeec--------ccccceeeEeeCCccc--ccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHH
Q 017476          145 KRKPFQYLVGC--------EHWRDLVLSVEEGVFI--PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIA  214 (371)
Q Consensus       145 ~~~P~~yi~g~--------~~f~~~~~~v~~~vli--Prp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la  214 (371)
                      .++|.+|+.|.        .+|+++.|.++++.|+  .+..++.+++.+++++    ...++.+|||+|||+|.+++.++
T Consensus       241 ~~~~~~~i~g~~~~~~~~~~~~~g~~f~~~~~~F~q~n~~~~e~l~~~vl~~l----~~~~~~~VLDlgcGtG~~sl~la  316 (443)
T PRK13168        241 KGPDLVHLLGPADAQLSYYLPEFGLRLAFSPRDFIQVNAQVNQKMVARALEWL----DPQPGDRVLDLFCGLGNFTLPLA  316 (443)
T ss_pred             CCCcceeecccccCCcceEEEcCCeEEEECCCCeEEcCHHHHHHHHHHHHHHh----cCCCCCEEEEEeccCCHHHHHHH
Confidence            46789999886        2467899999999997  3567899999999877    22345799999999999999999


Q ss_pred             HHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc---CCCceeEEEEcCCCCCCCCcccchhhhcc
Q 017476          215 RVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD---VEGKLSGVVSNPPYIPSDDISGLQVEVGK  291 (371)
Q Consensus       215 ~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~---~~~~fDlIvsNPPYi~~~~~~~l~~ev~~  291 (371)
                      +..   .+|+|+|+|+.|++.|++|++.+++.+ ++++++|+.+.+..   ..++||+|++||||...            
T Consensus       317 ~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~-v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g~------------  380 (443)
T PRK13168        317 RQA---AEVVGVEGVEAMVERARENARRNGLDN-VTFYHANLEEDFTDQPWALGGFDKVLLDPPRAGA------------  380 (443)
T ss_pred             HhC---CEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEEeChHHhhhhhhhhcCCCCEEEECcCCcCh------------
Confidence            863   699999999999999999999999864 99999999765431   13579999999999631            


Q ss_pred             cCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEE
Q 017476          292 HEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSI  355 (371)
Q Consensus       292 ~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~  355 (371)
                                    .   .+++.+. .+++++++++.++....+..+..+.+    .||.-.++
T Consensus       381 --------------~---~~~~~l~-~~~~~~ivyvSCnp~tlaRDl~~L~~----~gY~l~~i  422 (443)
T PRK13168        381 --------------A---EVMQALA-KLGPKRIVYVSCNPATLARDAGVLVE----AGYRLKRA  422 (443)
T ss_pred             --------------H---HHHHHHH-hcCCCeEEEEEeChHHhhccHHHHhh----CCcEEEEE
Confidence                          1   2222222 36999999999987777777777765    56854444

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.74  E-value=1.4e-16  Score=151.73  Aligned_cols=189  Identities=23%  Similarity=0.397  Sum_probs=139.1

Q ss_pred             HHHHHHHHHHHhhcCCcee---eEeecccccc-------eeeEeeCCcccc---cchHHHHHHHHHHHhhhcCCCCCCCe
Q 017476          132 LDELYGLWKQRIEKRKPFQ---YLVGCEHWRD-------LVLSVEEGVFIP---RPETELMVDLVSDVLVRDNDGLRDGF  198 (371)
Q Consensus       132 ~~~~~~~~~~r~~~~~P~~---yi~g~~~f~~-------~~~~v~~~vliP---rp~te~lv~~~~~~~~~~~~~~~~~~  198 (371)
                      .++|...|++-.   .|+.   .++-.+.|+.       ..+.++||.-+-   +|.|.+.++++.+..      .++.+
T Consensus        95 e~DW~~~wk~~~---~P~rig~~f~I~Psw~~~~~~~~~~~i~lDPGlAFGTG~HpTT~lcL~~Le~~~------~~g~~  165 (300)
T COG2264          95 EEDWEREWKKYF---HPVRIGERFVIVPSWREYPEPSDELNIELDPGLAFGTGTHPTTSLCLEALEKLL------KKGKT  165 (300)
T ss_pred             hHHHHHHHHhcC---CcEEeeeeEEECCCCccCCCCCCceEEEEccccccCCCCChhHHHHHHHHHHhh------cCCCE
Confidence            467777887543   4433   2333455652       347788888873   588999999887766      25779


Q ss_pred             EEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCC
Q 017476          199 WVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIP  278 (371)
Q Consensus       199 VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~  278 (371)
                      |||+|||||.+++++++.  ...+|+|+|+++.|++.|+.|++.|++...++....+..+...  .++||+||+|-    
T Consensus       166 vlDvGcGSGILaIAa~kL--GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~--~~~~DvIVANI----  237 (300)
T COG2264         166 VLDVGCGSGILAIAAAKL--GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPE--NGPFDVIVANI----  237 (300)
T ss_pred             EEEecCChhHHHHHHHHc--CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcc--cCcccEEEehh----
Confidence            999999999999999984  4568999999999999999999999987533333333322222  26999999982    


Q ss_pred             CCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEec
Q 017476          279 SDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSD  358 (371)
Q Consensus       279 ~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~D  358 (371)
                             -.                  +.+..+...+.+.|||||++++.--=.+|.+.|.+.+.+   .||..+++...
T Consensus       238 -------LA------------------~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~---~gf~v~~~~~~  289 (300)
T COG2264         238 -------LA------------------EVLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQ---AGFEVVEVLER  289 (300)
T ss_pred             -------hH------------------HHHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHh---CCCeEeEEEec
Confidence                   01                  234578888899999999999976556789999988874   68988777766


Q ss_pred             CCCCceEE
Q 017476          359 FAGIQRFV  366 (371)
Q Consensus       359 l~g~~R~~  366 (371)
                       .+.-+++
T Consensus       290 -~eW~~i~  296 (300)
T COG2264         290 -EEWVAIV  296 (300)
T ss_pred             -CCEEEEE
Confidence             5555544

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.71  E-value=7.8e-16  Score=138.79  Aligned_cols=139  Identities=21%  Similarity=0.193  Sum_probs=109.6

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCC
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP  275 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPP  275 (371)
                      +.+|||+|||+|.+++.+++.. ++.+|+|+|+|+.+++.|++|++.+++++ ++++++|..+. .. .++||+|++|- 
T Consensus        46 g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~-~~-~~~fDlV~~~~-  120 (187)
T PRK00107         46 GERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEF-GQ-EEKFDVVTSRA-  120 (187)
T ss_pred             CCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhC-CC-CCCccEEEEcc-
Confidence            6799999999999999999875 78899999999999999999999999876 99999998763 33 56899999961 


Q ss_pred             CCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEE
Q 017476          276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSI  355 (371)
Q Consensus       276 Yi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~  355 (371)
                                                   ...+..+++.+.++|+|||.+++.. +..+...+.++.+.+  +..-.-++
T Consensus       121 -----------------------------~~~~~~~l~~~~~~LkpGG~lv~~~-~~~~~~~l~~~~~~~--~~~~~~~~  168 (187)
T PRK00107        121 -----------------------------VASLSDLVELCLPLLKPGGRFLALK-GRDPEEEIAELPKAL--GGKVEEVI  168 (187)
T ss_pred             -----------------------------ccCHHHHHHHHHHhcCCCeEEEEEe-CCChHHHHHHHHHhc--CceEeeeE
Confidence                                         0113478889999999999999998 556777777777753  33322233


Q ss_pred             ---EecCCCCceEEEEEeC
Q 017476          356 ---VSDFAGIQRFVTGFRQ  371 (371)
Q Consensus       356 ---~~Dl~g~~R~~~a~~~  371 (371)
                         ..-+.|-..+++-+|+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~  187 (187)
T PRK00107        169 ELTLPGLDGERHLVIIRKK  187 (187)
T ss_pred             EEecCCCCCcEEEEEEecC
Confidence               3445666678877764

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.71  E-value=1.7e-16  Score=130.00  Aligned_cols=110  Identities=28%  Similarity=0.378  Sum_probs=88.7

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCC
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP  275 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPP  275 (371)
                      +.+|||+|||+|.+++.+++.. ++.+|+|||+|+++++.|++|+...+..++++++++|+ .......++||+|+++- 
T Consensus         2 ~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~-   78 (112)
T PF12847_consen    2 GGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSG-   78 (112)
T ss_dssp             TCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECS-
T ss_pred             CCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECC-
Confidence            5699999999999999999965 78999999999999999999998888888999999999 32233346899999954 


Q ss_pred             CCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       276 Yi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      +..    ..+                 -.++..+.+++.+.+.|+|||+++++.
T Consensus        79 ~~~----~~~-----------------~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   79 FTL----HFL-----------------LPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             GSG----GGC-----------------CHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             Ccc----ccc-----------------cchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            210    000                 012445678999999999999999976

...

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.69  E-value=8.3e-16  Score=147.45  Aligned_cols=192  Identities=29%  Similarity=0.404  Sum_probs=131.2

Q ss_pred             hHHHHHHHHHHHhhcCCcee-eEeecccccc-------eeeEeeCCcccc---cchHHHHHHHHHHHhhhcCCCCCCCeE
Q 017476          131 GLDELYGLWKQRIEKRKPFQ-YLVGCEHWRD-------LVLSVEEGVFIP---RPETELMVDLVSDVLVRDNDGLRDGFW  199 (371)
Q Consensus       131 ~~~~~~~~~~~r~~~~~P~~-yi~g~~~f~~-------~~~~v~~~vliP---rp~te~lv~~~~~~~~~~~~~~~~~~V  199 (371)
                      +.++|...|++...- .++. .++-.+.|..       ..+.++|++-+-   +|.|.++++.+.+..      .++.+|
T Consensus        93 ~~~dW~~~Wk~~~~P-~~vg~~~~I~P~w~~~~~~~~~~~I~idPg~AFGTG~H~TT~lcl~~l~~~~------~~g~~v  165 (295)
T PF06325_consen   93 EEEDWEEAWKKYFKP-IRVGDRLVIVPSWEEYPEPPDEIVIEIDPGMAFGTGHHPTTRLCLELLEKYV------KPGKRV  165 (295)
T ss_dssp             -HHCHHHHHHHH----EEECTTEEEEETT----SSTTSEEEEESTTSSS-SSHCHHHHHHHHHHHHHS------STTSEE
T ss_pred             ccccchHHHHhcCcc-EEECCcEEEECCCcccCCCCCcEEEEECCCCcccCCCCHHHHHHHHHHHHhc------cCCCEE
Confidence            446788888776532 1111 2333444432       357788887773   588888888887765      245699


Q ss_pred             EEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCC
Q 017476          200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPS  279 (371)
Q Consensus       200 LDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~  279 (371)
                      ||+|||||.+++++++.  ...+|+|+|+++.+++.|++|++.|++.+++.+..  ..+ .  ..++||+|++|-     
T Consensus       166 LDvG~GSGILaiaA~kl--GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~--~~~-~--~~~~~dlvvANI-----  233 (295)
T PF06325_consen  166 LDVGCGSGILAIAAAKL--GAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSL--SED-L--VEGKFDLVVANI-----  233 (295)
T ss_dssp             EEES-TTSHHHHHHHHT--TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESC--TSC-T--CCS-EEEEEEES-----
T ss_pred             EEeCCcHHHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEE--ecc-c--ccccCCEEEECC-----
Confidence            99999999999999984  45689999999999999999999999998776631  111 1  137999999982     


Q ss_pred             CCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEecC
Q 017476          280 DDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDF  359 (371)
Q Consensus       280 ~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl  359 (371)
                            .                  .+.+..++....++|+|||++++.---..|.+.|.+.++    .||..++...+ 
T Consensus       234 ------~------------------~~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~----~g~~~~~~~~~-  284 (295)
T PF06325_consen  234 ------L------------------ADVLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYK----QGFELVEEREE-  284 (295)
T ss_dssp             -------------------------HHHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHH----TTEEEEEEEEE-
T ss_pred             ------C------------------HHHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHH----CCCEEEEEEEE-
Confidence                  1                  233457778888999999999996544568888888885    37876665542 


Q ss_pred             CCCceEEEEEeC
Q 017476          360 AGIQRFVTGFRQ  371 (371)
Q Consensus       360 ~g~~R~~~a~~~  371 (371)
                       |..-.+.++|+
T Consensus       285 -~~W~~l~~~Kk  295 (295)
T PF06325_consen  285 -GEWVALVFKKK  295 (295)
T ss_dssp             -TTEEEEEEEE-
T ss_pred             -CCEEEEEEEeC
Confidence             44455555554

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.69  E-value=4.4e-15  Score=139.83  Aligned_cols=189  Identities=25%  Similarity=0.355  Sum_probs=129.5

Q ss_pred             hHHHHHHHHHHHhhcCCceeeEeecccccc------eeeEeeCCcccc---cchHHHHHHHHHHHhhhcCCCCCCCeEEE
Q 017476          131 GLDELYGLWKQRIEKRKPFQYLVGCEHWRD------LVLSVEEGVFIP---RPETELMVDLVSDVLVRDNDGLRDGFWVD  201 (371)
Q Consensus       131 ~~~~~~~~~~~r~~~~~P~~yi~g~~~f~~------~~~~v~~~vliP---rp~te~lv~~~~~~~~~~~~~~~~~~VLD  201 (371)
                      +.+++...|++....-+--..+.-.+.|..      ..+.++|+.-+.   ++.|..+++.+....      .++.+|||
T Consensus        52 ~~~dw~~~w~~~~~p~~~g~~~~i~p~~~~~~~~~~~~i~i~p~~afgtg~h~tt~~~l~~l~~~~------~~~~~VLD  125 (250)
T PRK00517         52 EDEDWEREWKKYFHPIRIGDRLWIVPSWEDPPDPDEINIELDPGMAFGTGTHPTTRLCLEALEKLV------LPGKTVLD  125 (250)
T ss_pred             CchhHHHHHHHHCCCEEEcCCEEEECCCcCCCCCCeEEEEECCCCccCCCCCHHHHHHHHHHHhhc------CCCCEEEE
Confidence            346788888877533222213333344432      345666665553   466677666665433      24679999


Q ss_pred             ECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCC
Q 017476          202 LGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDD  281 (371)
Q Consensus       202 lG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~  281 (371)
                      +|||+|.+++.+++.  ...+|+|+|+|+.+++.|++|+..+++.+++.+..+|.         +||+|++|..      
T Consensus       126 iGcGsG~l~i~~~~~--g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~---------~fD~Vvani~------  188 (250)
T PRK00517        126 VGCGSGILAIAAAKL--GAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL---------KADVIVANIL------  188 (250)
T ss_pred             eCCcHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC---------CcCEEEEcCc------
Confidence            999999999987764  33479999999999999999999998865566555432         6999999731      


Q ss_pred             cccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEecCCC
Q 017476          282 ISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAG  361 (371)
Q Consensus       282 ~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g  361 (371)
                                             .+.+..++..+.++|||||++++......+.+.+.+.+++   .||..+++..+  |
T Consensus       189 -----------------------~~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~---~Gf~~~~~~~~--~  240 (250)
T PRK00517        189 -----------------------ANPLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEE---AGFTLDEVLER--G  240 (250)
T ss_pred             -----------------------HHHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHH---CCCEEEEEEEe--C
Confidence                                   1224467888999999999999986556677888888875   78977766553  3


Q ss_pred             CceEEEEEe
Q 017476          362 IQRFVTGFR  370 (371)
Q Consensus       362 ~~R~~~a~~  370 (371)
                      ....++++|
T Consensus       241 ~W~~~~~~~  249 (250)
T PRK00517        241 EWVALVGKK  249 (250)
T ss_pred             CEEEEEEEe
Confidence            333344444

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.68  E-value=1.6e-15  Score=136.09  Aligned_cols=137  Identities=20%  Similarity=0.220  Sum_probs=103.9

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      .+.+|||+|||+|.+++.++... ++.+|+|+|.|+.+++.+++|++++++.+ ++++++|+.+. . ..++||+|++|.
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~~~~~~-i~~i~~d~~~~-~-~~~~fD~I~s~~  117 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAELGLNN-VEIVNGRAEDF-Q-HEEQFDVITSRA  117 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHhCCCC-eEEEecchhhc-c-ccCCccEEEehh
Confidence            46799999999999999998764 77899999999999999999999999865 99999999763 2 246899999963


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEE
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVS  354 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~  354 (371)
                       +                             ..+..+++.+.++|+|||.+++.+ +.....++..+.+..-..||..++
T Consensus       118 -~-----------------------------~~~~~~~~~~~~~LkpgG~lvi~~-~~~~~~~~~~~~e~~~~~~~~~~~  166 (181)
T TIGR00138       118 -L-----------------------------ASLNVLLELTLNLLKVGGYFLAYK-GKKYLDEIEEAKRKCQVLGVEPLE  166 (181)
T ss_pred             -h-----------------------------hCHHHHHHHHHHhcCCCCEEEEEc-CCCcHHHHHHHHHhhhhcCceEee
Confidence             1                             112356777789999999999998 556666666666542224665544


Q ss_pred             EEecCCCCceEEE
Q 017476          355 IVSDFAGIQRFVT  367 (371)
Q Consensus       355 ~~~Dl~g~~R~~~  367 (371)
                      . +.+.+-+|=++
T Consensus       167 ~-~~~~~~~~~~~  178 (181)
T TIGR00138       167 V-PPLTGPDRHLV  178 (181)
T ss_pred             c-cccCCCceEEE
Confidence            3 33555566444

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.67  E-value=6.7e-15  Score=136.33  Aligned_cols=145  Identities=17%  Similarity=0.258  Sum_probs=112.8

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|.++..+++.+++..+|+|+|+|+.+++.|++|+...++. +++++++|..+. +...++||+|+++-
T Consensus        45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~-~~~~~~fD~V~~~~  122 (231)
T TIGR02752        45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLH-NVELVHGNAMEL-PFDDNSFDYVTIGF  122 (231)
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCC-ceEEEEechhcC-CCCCCCccEEEEec
Confidence            4679999999999999999987656789999999999999999999888774 599999998653 22347899999964


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCc--------------------
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQ--------------------  334 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q--------------------  334 (371)
                      .+.              +-            ..+..+++++.+.|+|||++++...+..+                    
T Consensus       123 ~l~--------------~~------------~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  176 (231)
T TIGR02752       123 GLR--------------NV------------PDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFG  176 (231)
T ss_pred             ccc--------------cC------------CCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhh
Confidence            321              11            11346888899999999999876532111                    


Q ss_pred             ----------------------HHHHHHHHhccccCCceeEEEEecCCCCceEEEEEe
Q 017476          335 ----------------------CKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFR  370 (371)
Q Consensus       335 ----------------------~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~~  370 (371)
                                            .+++.+++++   .||..+++..-..|.-..++|+|
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---aGf~~~~~~~~~~g~~~~~~~~~  231 (231)
T TIGR02752       177 KLFAKSYKEYSWLQESTRDFPGMDELAEMFQE---AGFKDVEVKSYTGGVAAMHMGFK  231 (231)
T ss_pred             HHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHH---cCCCeeEEEEcccceEEEEEEEC
Confidence                                  1456677775   78999998887779998988876

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.67  E-value=1.2e-15  Score=156.12  Aligned_cols=154  Identities=19%  Similarity=0.165  Sum_probs=116.8

Q ss_pred             ccCchHHHHHHHHHHHhhcCCceee----EeecccccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEE
Q 017476          127 RLRIGLDELYGLWKQRIEKRKPFQY----LVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDL  202 (371)
Q Consensus       127 ~l~~~~~~~~~~~~~r~~~~~P~~y----i~g~~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDl  202 (371)
                      .+..+..+.+..+.+|      +||    |+|...|++.+|.+.++++    +|+.+++.+.  +      .++.+|||+
T Consensus       212 ~~~~~~~~~~~~~~~~------~~y~~~~i~~~~~f~g~~~~v~~~v~----~te~l~~~~~--~------~~~~~vLDi  273 (475)
T PLN02336        212 KVSSTNDKGFQRFLDN------VQYKSSGILRYERVFGEGFVSTGGLE----TTKEFVDKLD--L------KPGQKVLDV  273 (475)
T ss_pred             eecCCcchhHHHHhhh------hccccccHHHHHHHhCCCCCCCchHH----HHHHHHHhcC--C------CCCCEEEEE
Confidence            3444334445444444      999    9999999999999999987    6777777542  1      245699999


Q ss_pred             CCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCc
Q 017476          203 GTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDI  282 (371)
Q Consensus       203 G~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~  282 (371)
                      |||+|.+++.+++.+  +.+|+|+|+|+.+++.|++|+.  +...++++.++|+.+.. ...++||+|+|+--+      
T Consensus       274 GcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~-~~~~~fD~I~s~~~l------  342 (475)
T PLN02336        274 GCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKT-YPDNSFDVIYSRDTI------  342 (475)
T ss_pred             eccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCC-CCCCCEEEEEECCcc------
Confidence            999999999999874  6799999999999999999875  44456999999987642 224689999994222      


Q ss_pred             ccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          283 SGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       283 ~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                              .|-+            ....+++.+.+.|+|||.+++..
T Consensus       343 --------~h~~------------d~~~~l~~~~r~LkpgG~l~i~~  369 (475)
T PLN02336        343 --------LHIQ------------DKPALFRSFFKWLKPGGKVLISD  369 (475)
T ss_pred             --------cccC------------CHHHHHHHHHHHcCCCeEEEEEE
Confidence                    1211            13378889999999999999874

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.67  E-value=6.2e-15  Score=141.70  Aligned_cols=181  Identities=24%  Similarity=0.421  Sum_probs=130.5

Q ss_pred             HHHHHHHHHHHhhcCCcee-eEeeccccc-------ceeeEeeCCcccc---cchHHHHHHHHHHHhhhcCCCCCCCeEE
Q 017476          132 LDELYGLWKQRIEKRKPFQ-YLVGCEHWR-------DLVLSVEEGVFIP---RPETELMVDLVSDVLVRDNDGLRDGFWV  200 (371)
Q Consensus       132 ~~~~~~~~~~r~~~~~P~~-yi~g~~~f~-------~~~~~v~~~vliP---rp~te~lv~~~~~~~~~~~~~~~~~~VL  200 (371)
                      .+++.+.|++...- .++. +++-.+.|.       ...+.++|+..+.   ++.|.+..+.+....      .++.+||
T Consensus        92 ~~dW~~~w~~~~~p-~~~g~~~~i~p~w~~~~~~~~~~~i~ldpg~aFgtG~h~tt~l~l~~l~~~~------~~g~~VL  164 (288)
T TIGR00406        92 SKDWERAWKDNFHP-VQFGKRFWICPSWRDVPSDEDALIIMLDPGLAFGTGTHPTTSLCLEWLEDLD------LKDKNVI  164 (288)
T ss_pred             hhhHHHHHHHhCCC-EEEcCeEEEECCCcCCCCCCCcEEEEECCCCcccCCCCHHHHHHHHHHHhhc------CCCCEEE
Confidence            47888899877532 2222 233333342       2457788887773   366666666554432      2457999


Q ss_pred             EECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCC
Q 017476          201 DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSD  280 (371)
Q Consensus       201 DlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~  280 (371)
                      |+|||+|.+++.+++.  ...+|+|+|+|+.+++.|++|+..+++.+++.+..++....   ..++||+|++|..     
T Consensus       165 DvGcGsG~lai~aa~~--g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~---~~~~fDlVvan~~-----  234 (288)
T TIGR00406       165 DVGCGSGILSIAALKL--GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP---IEGKADVIVANIL-----  234 (288)
T ss_pred             EeCCChhHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc---cCCCceEEEEecC-----
Confidence            9999999999988874  45699999999999999999999999887788888774322   2368999999842     


Q ss_pred             CcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEe
Q 017476          281 DISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVS  357 (371)
Q Consensus       281 ~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~  357 (371)
                                              .+.+..++..+.+.|+|||++++..-...+.+.+.+.+++   . |..+++..
T Consensus       235 ------------------------~~~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~---~-f~~~~~~~  283 (288)
T TIGR00406       235 ------------------------AEVIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQ---G-FTVVEIRQ  283 (288)
T ss_pred             ------------------------HHHHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHc---c-CceeeEec
Confidence                                    1224468888899999999999976566788888888874   4 86665543

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.66  E-value=1.6e-15  Score=161.83  Aligned_cols=137  Identities=18%  Similarity=0.217  Sum_probs=107.3

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEcCcccccccCCCceeEEEEc
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ-DIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~-~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      ++++|||+|||+|.+++.+++.  ...+|++||+|+.+++.|++|++.+++. ++++++++|+++.+....++||+||+|
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~--Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD  615 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALG--GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID  615 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence            3579999999999999999984  3457999999999999999999999986 579999999987664435689999999


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCcee
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCN  352 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~  352 (371)
                      |||.......  . .+            .++...|..++..+.++|+|||.++++++ ..+.....+.+.+   .||.-
T Consensus       616 PP~f~~~~~~--~-~~------------~~~~~~y~~l~~~a~~lL~~gG~l~~~~~-~~~~~~~~~~~~~---~g~~~  675 (702)
T PRK11783        616 PPTFSNSKRM--E-DS------------FDVQRDHVALIKDAKRLLRPGGTLYFSNN-KRGFKMDEEGLAK---LGLKA  675 (702)
T ss_pred             CCCCCCCCcc--c-hh------------hhHHHHHHHHHHHHHHHcCCCCEEEEEeC-CccCChhHHHHHh---CCCeE
Confidence            9998643210  0 00            12356788999999999999999999984 4555555666654   45643

>PHA03411 putative methyltransferase; Provisional

Probab=99.65  E-value=2.2e-15  Score=142.07  Aligned_cols=136  Identities=18%  Similarity=0.235  Sum_probs=106.1

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCC
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP  275 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPP  275 (371)
                      ..+|||+|||+|.+++.+++.. +..+|+|+|+|+.+++.|++|.      .+++++++|+.+...  .++||+||+|||
T Consensus        65 ~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~--~~kFDlIIsNPP  135 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFES--NEKFDVVISNPP  135 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcc--cCCCcEEEEcCC
Confidence            4689999999999999998864 4579999999999999999874      248899999987543  368999999999


Q ss_pred             CCCCCCcccchhhhcccCccccccCCCCcHHHH--HHHHHHHhcccccCcEEEEEEC------CcCcHHHHHHHHhcccc
Q 017476          276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYL--LHLCNGTASMLKPGGFFAFETN------GEKQCKFLKNYLENDSA  347 (371)
Q Consensus       276 Yi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~--~~il~~a~~~LkpgG~lvle~~------~~~q~~~v~~~l~~~~~  347 (371)
                      |......        ......+..||+.|.+.+  ..++.....+|+|+|.+++...      ..-..++.++++++   
T Consensus       136 F~~l~~~--------d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~---  204 (279)
T PHA03411        136 FGKINTT--------DTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQ---  204 (279)
T ss_pred             ccccCch--------hhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHh---
Confidence            9864321        112225667888888875  7899999999999998877543      23346778888886   


Q ss_pred             CCce
Q 017476          348 CSFC  351 (371)
Q Consensus       348 ~gf~  351 (371)
                      .||.
T Consensus       205 ~g~~  208 (279)
T PHA03411        205 TGLV  208 (279)
T ss_pred             cCcE
Confidence            5663

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.65  E-value=3.2e-15  Score=135.84  Aligned_cols=127  Identities=20%  Similarity=0.305  Sum_probs=102.3

Q ss_pred             CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEE
Q 017476          192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV  271 (371)
Q Consensus       192 ~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIv  271 (371)
                      ...++.+|||+|||+|.+++.+++..++..+|+++|+++.+++.|++|++.+++.+++.++.+|..+.+....+.||.|+
T Consensus        37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~  116 (198)
T PRK00377         37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIF  116 (198)
T ss_pred             CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEE
Confidence            34467799999999999999999876566799999999999999999999999766799999998765444346899999


Q ss_pred             EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCc
Q 017476          272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSF  350 (371)
Q Consensus       272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf  350 (371)
                      ++..                             ...+..+++.+.+.|+|||.++++.....+...+...+++   .||
T Consensus       117 ~~~~-----------------------------~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~---~g~  163 (198)
T PRK00377        117 IGGG-----------------------------SEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALEN---IGF  163 (198)
T ss_pred             ECCC-----------------------------cccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHH---cCC
Confidence            8531                             1123478888999999999999977556667777888865   567

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.65  E-value=2.8e-15  Score=146.70  Aligned_cols=152  Identities=17%  Similarity=0.208  Sum_probs=110.8

Q ss_pred             ccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEE
Q 017476          172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEI  251 (371)
Q Consensus       172 Prp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~  251 (371)
                      |.+-.+.+...++...    ...++.+|||+|||+|.+++.++..   +.+++|+|+++.+++.|++|++.+|+++ +.+
T Consensus       163 ~~~l~~~la~~~~~l~----~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~  234 (329)
T TIGR01177       163 PGSMDPKLARAMVNLA----RVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIED-FFV  234 (329)
T ss_pred             CCCCCHHHHHHHHHHh----CCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeE
Confidence            3333445555555443    2335679999999999999987763   5799999999999999999999999987 899


Q ss_pred             EEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC
Q 017476          252 RQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG  331 (371)
Q Consensus       252 ~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~  331 (371)
                      +++|+.+ ++...+.||+|++||||.......                 +....+.+..+++.+.+.|+|||++++.+..
T Consensus       235 ~~~D~~~-l~~~~~~~D~Iv~dPPyg~~~~~~-----------------~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~  296 (329)
T TIGR01177       235 KRGDATK-LPLSSESVDAIATDPPYGRSTTAA-----------------GDGLESLYERSLEEFHEVLKSEGWIVYAVPT  296 (329)
T ss_pred             Eecchhc-CCcccCCCCEEEECCCCcCccccc-----------------CCchHHHHHHHHHHHHHHccCCcEEEEEEcC
Confidence            9999976 332246899999999997432211                 1112356789999999999999999999854


Q ss_pred             cCcHHHHHHHHhccccCCceeEEEE
Q 017476          332 EKQCKFLKNYLENDSACSFCNVSIV  356 (371)
Q Consensus       332 ~~q~~~v~~~l~~~~~~gf~~v~~~  356 (371)
                      ..   .+.++++.   .|| .+..+
T Consensus       297 ~~---~~~~~~~~---~g~-i~~~~  314 (329)
T TIGR01177       297 RI---DLESLAED---AFR-VVKRF  314 (329)
T ss_pred             CC---CHHHHHhh---cCc-chhee
Confidence            32   34555664   567 44443

This family is found exclusively in the Archaea.

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.65  E-value=3.4e-15  Score=151.80  Aligned_cols=170  Identities=20%  Similarity=0.317  Sum_probs=118.9

Q ss_pred             CCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC
Q 017476          167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ  246 (371)
Q Consensus       167 ~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~  246 (371)
                      .|.+.+..++..++..++.       ..++.+|||+|||+|..++.+++.+++.++|+|+|+++.+++.+++|++++|+.
T Consensus       229 ~G~~~~qd~~s~lv~~~l~-------~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~  301 (444)
T PRK14902        229 DGLITIQDESSMLVAPALD-------PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT  301 (444)
T ss_pred             CceEEEEChHHHHHHHHhC-------CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence            3444445555554443332       224568999999999999999997656789999999999999999999999987


Q ss_pred             CcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHH----HHHHHHHHHhcccccC
Q 017476          247 DIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLD----YLLHLCNGTASMLKPG  322 (371)
Q Consensus       247 ~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~----~~~~il~~a~~~Lkpg  322 (371)
                      + ++++++|+.+......++||+|++||||...+.+        ++.|...+....+++.    ....+++.+.++||||
T Consensus       302 ~-v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~--------~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG  372 (444)
T PRK14902        302 N-IETKALDARKVHEKFAEKFDKILVDAPCSGLGVI--------RRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKG  372 (444)
T ss_pred             e-EEEEeCCcccccchhcccCCEEEEcCCCCCCeee--------ccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            6 9999999976533223689999999998754332        3344444333333332    2357899999999999


Q ss_pred             cEEEEEECCc---CcHHHHHHHHhccccCCceeEE
Q 017476          323 GFFAFETNGE---KQCKFLKNYLENDSACSFCNVS  354 (371)
Q Consensus       323 G~lvle~~~~---~q~~~v~~~l~~~~~~gf~~v~  354 (371)
                      |.+++.+...   .....+..++++.  ..|..+.
T Consensus       373 G~lvystcs~~~~Ene~vv~~~l~~~--~~~~~~~  405 (444)
T PRK14902        373 GILVYSTCTIEKEENEEVIEAFLEEH--PEFELVP  405 (444)
T ss_pred             CEEEEEcCCCChhhhHHHHHHHHHhC--CCcEEec
Confidence            9999865322   2334455666652  3465444

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.65  E-value=6.9e-15  Score=132.33  Aligned_cols=124  Identities=23%  Similarity=0.304  Sum_probs=100.1

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|.+++.+++.. ++.+|+++|+|+.+++.|++|+..+++. +++++.+|....+   .++||+|+++-
T Consensus        31 ~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~~~---~~~~D~v~~~~  105 (187)
T PRK08287         31 RAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPIEL---PGKADAIFIGG  105 (187)
T ss_pred             CCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchhhc---CcCCCEEEECC
Confidence            56799999999999999999975 7789999999999999999999998875 4999999975433   35899999852


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEE
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVS  354 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~  354 (371)
                      ..                             ..+..+++.+.+.|+|||++++......+.+++.+++++   .||..++
T Consensus       106 ~~-----------------------------~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~---~g~~~~~  153 (187)
T PRK08287        106 SG-----------------------------GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEK---CGVSELD  153 (187)
T ss_pred             Cc-----------------------------cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHH---CCCCcce
Confidence            10                             013467888899999999999986555677778888886   6786655


Q ss_pred             E
Q 017476          355 I  355 (371)
Q Consensus       355 ~  355 (371)
                      +
T Consensus       154 ~  154 (187)
T PRK08287        154 C  154 (187)
T ss_pred             E
Confidence            4

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.64  E-value=2.3e-15  Score=150.40  Aligned_cols=131  Identities=16%  Similarity=0.198  Sum_probs=101.0

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEcCcccccccC---CCceeEE
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ-DIIEIRQGSWFGKLKDV---EGKLSGV  270 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~-~~v~~~~gD~~~~l~~~---~~~fDlI  270 (371)
                      ++++|||+|||+|.+++.++..  ...+|++||+|+.+++.|++|++.+++. ++++++++|+++.+...   .++||+|
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV  297 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI  297 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence            3679999999999999887753  4569999999999999999999999986 47999999998865432   3589999


Q ss_pred             EEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE-CCcCcHHHHHHHHhc
Q 017476          271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET-NGEKQCKFLKNYLEN  344 (371)
Q Consensus       271 vsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~-~~~~q~~~v~~~l~~  344 (371)
                      |+||||......              ++.   .++..|..++..+.++|+|||.+++.. .+.-..+.+.+++.+
T Consensus       298 ilDPP~f~~~k~--------------~l~---~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~  355 (396)
T PRK15128        298 VMDPPKFVENKS--------------QLM---GACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIAD  355 (396)
T ss_pred             EECCCCCCCChH--------------HHH---HHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHH
Confidence            999999754320              111   234568889999999999999988744 334455666666653

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.63  E-value=1e-14  Score=145.17  Aligned_cols=147  Identities=17%  Similarity=0.165  Sum_probs=112.0

Q ss_pred             ccceeeEeeCCcccc--cchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 017476          158 WRDLVLSVEEGVFIP--RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAV  235 (371)
Q Consensus       158 f~~~~~~v~~~vliP--rp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~  235 (371)
                      +.+..|.++++.|+.  ....+.+.+.+.+++ .   ...+.+|||+|||+|.+++.++..   ..+|+|||+++.+++.
T Consensus       198 ~~g~~~~~~~~~F~Q~n~~~~~~l~~~~~~~l-~---~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~  270 (374)
T TIGR02085       198 FNDVPLVIRPQSFFQTNPKVAAQLYATARQWV-R---EIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIAC  270 (374)
T ss_pred             ECCEEEEECCCccccCCHHHHHHHHHHHHHHH-H---hcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHH
Confidence            446789999999985  355677777777665 1   123468999999999999999964   4789999999999999


Q ss_pred             HHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHH
Q 017476          236 AAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGT  315 (371)
Q Consensus       236 A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a  315 (371)
                      |++|++.+++. +++++.+|+.+.+....++||+||.||||-.      +..                      .+++.+
T Consensus       271 a~~N~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G------~~~----------------------~~l~~l  321 (374)
T TIGR02085       271 AQQSAQMLGLD-NLSFAALDSAKFATAQMSAPELVLVNPPRRG------IGK----------------------ELCDYL  321 (374)
T ss_pred             HHHHHHHcCCC-cEEEEECCHHHHHHhcCCCCCEEEECCCCCC------CcH----------------------HHHHHH
Confidence            99999999986 5999999997654332346999999999841      111                      222222


Q ss_pred             hcccccCcEEEEEECCcCcHHHHHHH
Q 017476          316 ASMLKPGGFFAFETNGEKQCKFLKNY  341 (371)
Q Consensus       316 ~~~LkpgG~lvle~~~~~q~~~v~~~  341 (371)
                      . .++|++.++++++....+..+..+
T Consensus       322 ~-~~~p~~ivyvsc~p~TlaRDl~~L  346 (374)
T TIGR02085       322 S-QMAPKFILYSSCNAQTMAKDIAEL  346 (374)
T ss_pred             H-hcCCCeEEEEEeCHHHHHHHHHHh
Confidence            2 379999999999776677776666

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.63  E-value=4.2e-15  Score=134.78  Aligned_cols=145  Identities=23%  Similarity=0.315  Sum_probs=111.1

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc--CCCceeEEEEc
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD--VEGKLSGVVSN  273 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~--~~~~fDlIvsN  273 (371)
                      ..++||+|||+|.++..+++.. |+.+|+|+|+++.+++.|++|+...++. +++++++|+.+....  ..+.+|.|++|
T Consensus        17 ~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~   94 (194)
T TIGR00091        17 APLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLN   94 (194)
T ss_pred             CceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence            4589999999999999999985 8899999999999999999999999887 599999999753321  13589999999


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeE
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNV  353 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v  353 (371)
                      +|-.....         .|..+..+         ...+++.+.+.|||||.+++.+......+.+.+.+.+.  .+|..+
T Consensus        95 ~pdpw~k~---------~h~~~r~~---------~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~--~~f~~~  154 (194)
T TIGR00091        95 FPDPWPKK---------RHNKRRIT---------QPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSEN--DLFENT  154 (194)
T ss_pred             CCCcCCCC---------CccccccC---------CHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhC--CCeEec
Confidence            76322111         12211111         23688999999999999999997666677788888763  568877


Q ss_pred             EEEecCCCC
Q 017476          354 SIVSDFAGI  362 (371)
Q Consensus       354 ~~~~Dl~g~  362 (371)
                      ....|+.+.
T Consensus       155 ~~~~~~~~~  163 (194)
T TIGR00091       155 SKSTDLNNS  163 (194)
T ss_pred             ccccccCCC
Confidence            766666553

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PHA03412 putative methyltransferase; Provisional

Probab=99.62  E-value=2.9e-15  Score=138.41  Aligned_cols=108  Identities=17%  Similarity=0.263  Sum_probs=84.7

Q ss_pred             CCeEEEECCcccHHHHHHHHHhC--CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLG--SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~--~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      +.+|||+|||+|.+++.+++++.  +..+|+|||+++.++++|++|..      ++.++++|+....  ..++||+||+|
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~--~~~~FDlIIsN  121 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTE--FDTLFDMAISN  121 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhccc--ccCCccEEEEC
Confidence            56999999999999999998641  35699999999999999998852      3789999987532  24689999999


Q ss_pred             CCCCCCCCcccchhhhcccCccccc-cCCCCcHHHHHHHHHHHhcccccCcEEEE
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLAL-DGGVDGLDYLLHLCNGTASMLKPGGFFAF  327 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL-~gg~dGl~~~~~il~~a~~~LkpgG~lvl  327 (371)
                      |||.....               +. .+..+|+.....+++.+.+++++|+. ++
T Consensus       122 PPY~~~~~---------------~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL  160 (241)
T PHA03412        122 PPFGKIKT---------------SDFKGKYTGAEFEYKVIERASQIARQGTF-II  160 (241)
T ss_pred             CCCCCccc---------------cccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence            99986321               11 23356889999999999996666664 44

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.61  E-value=1.5e-14  Score=146.48  Aligned_cols=166  Identities=18%  Similarity=0.206  Sum_probs=121.6

Q ss_pred             CCceeeEeecccc----cceeeEeeCCcccc--cchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCC
Q 017476          146 RKPFQYLVGCEHW----RDLVLSVEEGVFIP--RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS  219 (371)
Q Consensus       146 ~~P~~yi~g~~~f----~~~~~~v~~~vliP--rp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~  219 (371)
                      +++...+.|...+    .+..|.++++.|++  +..++.+++.+.+.+    ...++.+|||+|||+|.+++.+++..  
T Consensus       241 g~~~~~l~G~~~~~~~~~~~~~~~~~~~F~Q~N~~~~~~l~~~~~~~l----~~~~~~~vLDl~cG~G~~sl~la~~~--  314 (431)
T TIGR00479       241 GEETEQIAGEGPIYEKSGDLSFSLSARDFFQVNSGQNEKLVDRALEAL----ELQGEELVVDAYCGVGTFTLPLAKQA--  314 (431)
T ss_pred             CCceEEEeCCCeEEEEECCEEEEECCCceeecCHHHHHHHHHHHHHHh----ccCCCCEEEEcCCCcCHHHHHHHHhC--
Confidence            3456667775443    36789999999985  466788888887766    22345699999999999999999863  


Q ss_pred             CcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc---CCCceeEEEEcCCCCCCCCcccchhhhcccCccc
Q 017476          220 KGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD---VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRL  296 (371)
Q Consensus       220 ~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~---~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~  296 (371)
                       .+|+|+|+++.+++.|++|++.+++. +++++.+|+.+.+..   ..+.||+|+.|||+....      .         
T Consensus       315 -~~V~~vE~~~~av~~a~~n~~~~~~~-nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr~G~~------~---------  377 (431)
T TIGR00479       315 -KSVVGIEVVPESVEKAQQNAELNGIA-NVEFLAGTLETVLPKQPWAGQIPDVLLLDPPRKGCA------A---------  377 (431)
T ss_pred             -CEEEEEEcCHHHHHHHHHHHHHhCCC-ceEEEeCCHHHHHHHHHhcCCCCCEEEECcCCCCCC------H---------
Confidence             58999999999999999999999986 599999998664332   134799999999974211      1         


Q ss_pred             cccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCcee
Q 017476          297 ALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCN  352 (371)
Q Consensus       297 aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~  352 (371)
                                   .+++.+. .+++++.+++.++.......+..+.+    .||.-
T Consensus       378 -------------~~l~~l~-~l~~~~ivyvsc~p~tlard~~~l~~----~gy~~  415 (431)
T TIGR00479       378 -------------EVLRTII-ELKPERIVYVSCNPATLARDLEFLCK----EGYGI  415 (431)
T ss_pred             -------------HHHHHHH-hcCCCEEEEEcCCHHHHHHHHHHHHH----CCeeE
Confidence                         3333333 37899999999865544455555443    56743

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.61  E-value=2.5e-14  Score=139.22  Aligned_cols=147  Identities=18%  Similarity=0.144  Sum_probs=111.8

Q ss_pred             ccceeeEeeCCccccc--chHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 017476          158 WRDLVLSVEEGVFIPR--PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAV  235 (371)
Q Consensus       158 f~~~~~~v~~~vliPr--p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~  235 (371)
                      +.+..|.++++.|++.  ...+.+.+.+.+++ .   ..++.+|||+|||+|.+++.+++.   +.+|+|+|+|+.+++.
T Consensus       138 ~~~~~~~~~~~sF~Q~n~~~~~~l~~~v~~~l-~---~~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~  210 (315)
T PRK03522        138 FNGVPLFIRPQSFFQTNPAVAAQLYATARDWV-R---ELPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIAC  210 (315)
T ss_pred             ECCEEEEECCCeeeecCHHHHHHHHHHHHHHH-H---hcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHH
Confidence            3467899999999864  45677888777776 2   123579999999999999999984   4799999999999999


Q ss_pred             HHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHH
Q 017476          236 AAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGT  315 (371)
Q Consensus       236 A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a  315 (371)
                      |++|++.+++. +++++++|+.+......++||+|++|||+-..      ..+                   ...++   
T Consensus       211 A~~n~~~~~l~-~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~G~------~~~-------------------~~~~l---  261 (315)
T PRK03522        211 AKQSAAELGLT-NVQFQALDSTQFATAQGEVPDLVLVNPPRRGI------GKE-------------------LCDYL---  261 (315)
T ss_pred             HHHHHHHcCCC-ceEEEEcCHHHHHHhcCCCCeEEEECCCCCCc------cHH-------------------HHHHH---
Confidence            99999999984 59999999976543233579999999996321      111                   11222   


Q ss_pred             hcccccCcEEEEEECCcCcHHHHHHH
Q 017476          316 ASMLKPGGFFAFETNGEKQCKFLKNY  341 (371)
Q Consensus       316 ~~~LkpgG~lvle~~~~~q~~~v~~~  341 (371)
                       ..++|++.+++.++.......+..+
T Consensus       262 -~~~~~~~ivyvsc~p~t~~rd~~~l  286 (315)
T PRK03522        262 -SQMAPRFILYSSCNAQTMAKDLAHL  286 (315)
T ss_pred             -HHcCCCeEEEEECCcccchhHHhhc
Confidence             2367889999999877777666554

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.61  E-value=8.4e-14  Score=132.02  Aligned_cols=146  Identities=18%  Similarity=0.158  Sum_probs=107.3

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH--cCCCCcEEEEEcCcccccccCCCceeEEEE
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR--YGLQDIIEIRQGSWFGKLKDVEGKLSGVVS  272 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~--~gl~~~v~~~~gD~~~~l~~~~~~fDlIvs  272 (371)
                      ++.+|||+|||+|.++..+++.+++.++|+|+|+|++|++.|+++...  .+...+++++++|+.+ ++..+++||+|++
T Consensus        73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~-lp~~~~sfD~V~~  151 (261)
T PLN02233         73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATD-LPFDDCYFDAITM  151 (261)
T ss_pred             CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccccc-CCCCCCCEeEEEE
Confidence            467999999999999999998765667999999999999999887542  2223469999999865 3433578999998


Q ss_pred             cCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCc--------------------
Q 017476          273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGE--------------------  332 (371)
Q Consensus       273 NPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~--------------------  332 (371)
                      +--+              .+-            .....+++++.+.|||||.+++.....                    
T Consensus       152 ~~~l--------------~~~------------~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~  205 (261)
T PLN02233        152 GYGL--------------RNV------------VDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVP  205 (261)
T ss_pred             eccc--------------ccC------------CCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhH
Confidence            5211              111            123478899999999999987753211                    


Q ss_pred             ---------------------CcHHHHHHHHhccccCCceeEEEEecCCCCceEEEEEe
Q 017476          333 ---------------------KQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFR  370 (371)
Q Consensus       333 ---------------------~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~~  370 (371)
                                           ...+++.+++++   .||..++...-..|.-++.+|+|
T Consensus       206 ~~~~~~~~~~y~~l~~s~~~f~s~~el~~ll~~---aGF~~~~~~~~~~g~~~~~~~~~  261 (261)
T PLN02233        206 VATGYGLAKEYEYLKSSINEYLTGEELEKLALE---AGFSSAKHYEISGGLMGNLVATR  261 (261)
T ss_pred             HHHHhCChHHHHHHHHHHHhcCCHHHHHHHHHH---CCCCEEEEEEcCCCeeEEEEEeC
Confidence                                 133455667764   78999988776778888887764

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.61  E-value=3.1e-15  Score=139.44  Aligned_cols=105  Identities=26%  Similarity=0.383  Sum_probs=75.0

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||||.++..+++..++.++|+|+|+|+.|++.|++++...+.. +++++++|..+ ++..+++||.|++- 
T Consensus        47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~-lp~~d~sfD~v~~~-  123 (233)
T PF01209_consen   47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAED-LPFPDNSFDAVTCS-  123 (233)
T ss_dssp             S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB---S-TT-EEEEEEE-
T ss_pred             CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHH-hcCCCCceeEEEHH-
Confidence            4679999999999999999987767789999999999999999999988876 59999999965 45456899999981 


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEE
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF  327 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvl  327 (371)
                       |           .. +.            +.+....++++.++|||||.+++
T Consensus       124 -f-----------gl-rn------------~~d~~~~l~E~~RVLkPGG~l~i  151 (233)
T PF01209_consen  124 -F-----------GL-RN------------FPDRERALREMYRVLKPGGRLVI  151 (233)
T ss_dssp             -S------------G-GG-------------SSHHHHHHHHHHHEEEEEEEEE
T ss_pred             -h-----------hH-Hh------------hCCHHHHHHHHHHHcCCCeEEEE
Confidence             0           01 11            12244788999999999998876

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.60  E-value=1.1e-14  Score=126.64  Aligned_cols=109  Identities=28%  Similarity=0.373  Sum_probs=89.8

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc-CCCceeEEEEc
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VEGKLSGVVSN  273 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~-~~~~fDlIvsN  273 (371)
                      ++.+|||+|||+|.++..+++...++.+++|+|+|+++++.|+++++..+++ +++|+++|+.+ ++. ..++||+|+++
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~-l~~~~~~~~D~I~~~   80 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIED-LPQELEEKFDIIISN   80 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTC-GCGCSSTTEEEEEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhc-cccccCCCeeEEEEc
Confidence            3569999999999999999965567899999999999999999999999998 69999999988 542 12689999998


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG  331 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~  331 (371)
                      +++..                          +.....+++.+.+.|++||.+++....
T Consensus        81 ~~l~~--------------------------~~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   81 GVLHH--------------------------FPDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             STGGG--------------------------TSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             Cchhh--------------------------ccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            76521                          122346788999999999999988743

...

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.60  E-value=7.1e-15  Score=132.12  Aligned_cols=143  Identities=24%  Similarity=0.329  Sum_probs=102.2

Q ss_pred             cccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 017476          157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA  236 (371)
Q Consensus       157 ~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A  236 (371)
                      .|.|..+...++ -.-||.+..+-+.+.+++...  ...+.+|||++||||++++.++.+  ...+|+.||.|+.+++..
T Consensus         7 ~~kgr~l~~p~~-~~~RPT~drvrealFniL~~~--~~~g~~vLDLFaGSGalGlEALSR--GA~~v~fVE~~~~a~~~i   81 (183)
T PF03602_consen    7 KYKGRKLKTPKG-DNTRPTTDRVREALFNILQPR--NLEGARVLDLFAGSGALGLEALSR--GAKSVVFVEKNRKAIKII   81 (183)
T ss_dssp             TTTT-EEE-TT---TS-SSSHHHHHHHHHHHHCH---HTT-EEEETT-TTSHHHHHHHHT--T-SEEEEEES-HHHHHHH
T ss_pred             ecCCCEecCCCC-CCcCCCcHHHHHHHHHHhccc--ccCCCeEEEcCCccCccHHHHHhc--CCCeEEEEECCHHHHHHH
Confidence            356677766555 344899999999888888322  146789999999999999998885  457999999999999999


Q ss_pred             HHHHHHcCCCCcEEEEEcCcccccccC---CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHH
Q 017476          237 AFNAQRYGLQDIIEIRQGSWFGKLKDV---EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCN  313 (371)
Q Consensus       237 ~~n~~~~gl~~~v~~~~gD~~~~l~~~---~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~  313 (371)
                      ++|++..+..++++++.+|.+..+...   ..+||+|+.+|||-...                         . +..+++
T Consensus        82 ~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~-------------------------~-~~~~l~  135 (183)
T PF03602_consen   82 KKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGL-------------------------Y-YEELLE  135 (183)
T ss_dssp             HHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCH-------------------------H-HHHHHH
T ss_pred             HHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECCCcccch-------------------------H-HHHHHH
Confidence            999999999888999999987665332   47899999999996321                         0 223444


Q ss_pred             HHh--cccccCcEEEEEEC
Q 017476          314 GTA--SMLKPGGFFAFETN  330 (371)
Q Consensus       314 ~a~--~~LkpgG~lvle~~  330 (371)
                      ...  .+|+++|.+++|+.
T Consensus       136 ~l~~~~~l~~~~~ii~E~~  154 (183)
T PF03602_consen  136 LLAENNLLNEDGLIIIEHS  154 (183)
T ss_dssp             HHHHTTSEEEEEEEEEEEE
T ss_pred             HHHHCCCCCCCEEEEEEec
Confidence            443  89999999999995

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.59  E-value=1.3e-14  Score=132.54  Aligned_cols=130  Identities=18%  Similarity=0.190  Sum_probs=99.6

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc--cCCCceeEEEE
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK--DVEGKLSGVVS  272 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~--~~~~~fDlIvs  272 (371)
                      .+.+|||+|||+|.++..+++.+ ++.+|+|||+|+++++.|++|+..+++. +++++++|+.+.+.  ...+.||+|++
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~D~V~~  117 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLT-NLRLLCGDAVEVLLDMFPDGSLDRIYL  117 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCC-CEEEEecCHHHHHHHHcCccccceEEE
Confidence            35689999999999999999875 7789999999999999999999998874 59999999833332  22468999999


Q ss_pred             cCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhc
Q 017476          273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLEN  344 (371)
Q Consensus       273 NPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~  344 (371)
                      |.|.......+..                  .......+++.+.++|+|||.+++.+........+.+.+++
T Consensus       118 ~~~~p~~~~~~~~------------------~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~  171 (202)
T PRK00121        118 NFPDPWPKKRHHK------------------RRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSA  171 (202)
T ss_pred             ECCCCCCCccccc------------------cccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence            8653211110000                  00113478899999999999999998777777778887775

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.58  E-value=2.9e-14  Score=130.85  Aligned_cols=138  Identities=20%  Similarity=0.254  Sum_probs=98.9

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc-------ccCCCce
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL-------KDVEGKL  267 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l-------~~~~~~f  267 (371)
                      ++.+|||+|||+|.++..+++..++..+|+|||+++ +          ...+ +++++++|+.+..       ....+.|
T Consensus        51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~~-~v~~i~~D~~~~~~~~~i~~~~~~~~~  118 (209)
T PRK11188         51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPIV-GVDFLQGDFRDELVLKALLERVGDSKV  118 (209)
T ss_pred             CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCCC-CcEEEecCCCChHHHHHHHHHhCCCCC
Confidence            466999999999999999999865567999999998 1          1233 3899999997641       1124689


Q ss_pred             eEEEEcC-CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccc
Q 017476          268 SGVVSNP-PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDS  346 (371)
Q Consensus       268 DlIvsNP-PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~  346 (371)
                      |+|+||+ |+..........    .+            +.....+++.+.++|+|||.+++.+.......++...++   
T Consensus       119 D~V~S~~~~~~~g~~~~d~~----~~------------~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~---  179 (209)
T PRK11188        119 QVVMSDMAPNMSGTPAVDIP----RA------------MYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIR---  179 (209)
T ss_pred             CEEecCCCCccCCChHHHHH----HH------------HHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHH---
Confidence            9999997 554221100000    00            122357899999999999999997754455555555554   


Q ss_pred             cCCceeEEEEecCCCCce
Q 017476          347 ACSFCNVSIVSDFAGIQR  364 (371)
Q Consensus       347 ~~gf~~v~~~~Dl~g~~R  364 (371)
                       ..|..+++++|.++++|
T Consensus       180 -~~f~~v~~~Kp~ssr~~  196 (209)
T PRK11188        180 -SLFTKVKVRKPDSSRAR  196 (209)
T ss_pred             -hCceEEEEECCcccccc
Confidence             46999999999999876

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.58  E-value=1.2e-13  Score=131.25  Aligned_cols=140  Identities=16%  Similarity=0.238  Sum_probs=102.0

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|..++.+++.+++.+.|+|+|+++.+++.+++|++++|+.+ ++++.+|..... ...+.||.|++||
T Consensus        71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~-~~~~~fD~Vl~D~  148 (264)
T TIGR00446        71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLN-VAVTNFDGRVFG-AAVPKFDAILLDA  148 (264)
T ss_pred             CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc-EEEecCCHHHhh-hhccCCCEEEEcC
Confidence            56799999999999999999987556799999999999999999999999865 999999975432 2235799999999


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcH----HHHHHHHHHHhcccccCcEEEEEECCcCc---HHHHHHHHhc
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGL----DYLLHLCNGTASMLKPGGFFAFETNGEKQ---CKFLKNYLEN  344 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl----~~~~~il~~a~~~LkpgG~lvle~~~~~q---~~~v~~~l~~  344 (371)
                      |+...+.+        +++|...+.-..+-+    .....+++.+.++|||||++++.+.....   .+.+..+++.
T Consensus       149 Pcsg~G~~--------~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~  217 (264)
T TIGR00446       149 PCSGEGVI--------RKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEK  217 (264)
T ss_pred             CCCCCccc--------ccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHh
Confidence            99755433        223332211111111    23356999999999999999998743333   2344555554

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.57  E-value=8.1e-14  Score=141.01  Aligned_cols=162  Identities=15%  Similarity=0.187  Sum_probs=114.8

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc-CCCceeEEEEc
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VEGKLSGVVSN  273 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~-~~~~fDlIvsN  273 (371)
                      ++.+|||+|||+|..++.+++.. ++.+|+|+|+++.+++.+++|++++|+.  ++++++|..+.... ..++||.|++|
T Consensus       244 ~g~~VLDlgaG~G~~t~~la~~~-~~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~~~~~~~fD~Vl~D  320 (427)
T PRK10901        244 NGERVLDACAAPGGKTAHILELA-PQAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQWWDGQPFDRILLD  320 (427)
T ss_pred             CCCEEEEeCCCCChHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchhhcccCCCCEEEEC
Confidence            56799999999999999999975 5579999999999999999999999875  78999998753221 13579999999


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcH----HHHHHHHHHHhcccccCcEEEEEEC---CcCcHHHHHHHHhccc
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGL----DYLLHLCNGTASMLKPGGFFAFETN---GEKQCKFLKNYLENDS  346 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl----~~~~~il~~a~~~LkpgG~lvle~~---~~~q~~~v~~~l~~~~  346 (371)
                      |||...+.+.        +.|...+......+    ...+.+++.+.+.|||||++++.+.   .....+.+..++++. 
T Consensus       321 ~Pcs~~G~~~--------~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~-  391 (427)
T PRK10901        321 APCSATGVIR--------RHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARH-  391 (427)
T ss_pred             CCCCcccccc--------cCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhC-
Confidence            9997644332        22222211111111    3456899999999999999998763   234455667777653 


Q ss_pred             cCCcee----------EEEEecCCCCceEEEEE
Q 017476          347 ACSFCN----------VSIVSDFAGIQRFVTGF  369 (371)
Q Consensus       347 ~~gf~~----------v~~~~Dl~g~~R~~~a~  369 (371)
                       .+|.-          ++++++..|.+=|.+|+
T Consensus       392 -~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~  423 (427)
T PRK10901        392 -PDAELLDTGTPQQPGRQLLPGEEDGDGFFYAL  423 (427)
T ss_pred             -CCCEEecCCCCCCCceEECCCCCCCCCeEEEE
Confidence             34532          34555555666666663

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.57  E-value=1.2e-13  Score=128.43  Aligned_cols=104  Identities=19%  Similarity=0.279  Sum_probs=88.2

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||||-+++.+++.. +.++|+|+|+|+.||+.|++.+...+..+ ++|+++|+.+ ++..+.+||+|.+.-
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~-g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~-LPf~D~sFD~vt~~f  127 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSV-GTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAEN-LPFPDNSFDAVTISF  127 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhc-CCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhh-CCCCCCccCEEEeee
Confidence            57899999999999999999997 58899999999999999999999988887 9999999954 666678999999820


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEE
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF  327 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvl  327 (371)
                                    -.++            ..++...|++++|+|||||++++
T Consensus       128 --------------glrn------------v~d~~~aL~E~~RVlKpgG~~~v  154 (238)
T COG2226         128 --------------GLRN------------VTDIDKALKEMYRVLKPGGRLLV  154 (238)
T ss_pred             --------------hhhc------------CCCHHHHHHHHHHhhcCCeEEEE
Confidence                          0111            23466899999999999998766

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.57  E-value=5.6e-14  Score=142.19  Aligned_cols=144  Identities=18%  Similarity=0.266  Sum_probs=107.5

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|..+..++..++++++|+|+|+|+.+++.+++|+++.|+.+ ++++++|+.+......++||.|++||
T Consensus       237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~-v~~~~~Da~~l~~~~~~~fD~Vl~Da  315 (431)
T PRK14903        237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSS-IEIKIADAERLTEYVQDTFDRILVDA  315 (431)
T ss_pred             CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCe-EEEEECchhhhhhhhhccCCEEEECC
Confidence            46799999999999999999987667899999999999999999999999864 99999998653222346899999999


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcH-HHHHHHHHHHhcccccCcEEEEEECCc---CcHHHHHHHHhc
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGL-DYLLHLCNGTASMLKPGGFFAFETNGE---KQCKFLKNYLEN  344 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl-~~~~~il~~a~~~LkpgG~lvle~~~~---~q~~~v~~~l~~  344 (371)
                      ||...+.+.. .+++..+.+...+    .++ ...++++..+.++|||||.+++.+...   ...+.|..++++
T Consensus       316 PCsg~G~~~~-~p~~~~~~~~~~~----~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~  384 (431)
T PRK14903        316 PCTSLGTARN-HPEVLRRVNKEDF----KKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYE  384 (431)
T ss_pred             CCCCCccccC-ChHHHHhCCHHHH----HHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHh
Confidence            9987655322 3344333222110    112 244689999999999999999987432   234455666664

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.56  E-value=7e-14  Score=142.20  Aligned_cols=162  Identities=20%  Similarity=0.272  Sum_probs=114.7

Q ss_pred             eeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC
Q 017476          165 VEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG  244 (371)
Q Consensus       165 v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~g  244 (371)
                      ..+|.+.....+..++-.++.       ..++.+|||+|||+|..+..+++.++..++|+|+|+|+.+++.+++|+++.|
T Consensus       227 ~~~G~~~vqd~~s~l~~~~l~-------~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g  299 (445)
T PRK14904        227 LKLGLVSVQNPTQALACLLLN-------PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALG  299 (445)
T ss_pred             HhCcEEEEeCHHHHHHHHhcC-------CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC
Confidence            445555555445554443332       2346799999999999999999876556799999999999999999999999


Q ss_pred             CCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcH----HHHHHHHHHHhcccc
Q 017476          245 LQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGL----DYLLHLCNGTASMLK  320 (371)
Q Consensus       245 l~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl----~~~~~il~~a~~~Lk  320 (371)
                      +. +++++++|+.+...  .+.||.|++|||+.....+.        ..|..........+    .....++..+.+.|+
T Consensus       300 ~~-~v~~~~~Da~~~~~--~~~fD~Vl~D~Pcsg~g~~~--------r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lk  368 (445)
T PRK14904        300 IT-IIETIEGDARSFSP--EEQPDAILLDAPCTGTGVLG--------RRAELRWKLTPEKLAELVGLQAELLDHAASLLK  368 (445)
T ss_pred             CC-eEEEEeCccccccc--CCCCCEEEEcCCCCCcchhh--------cCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            86 49999999876543  36899999999997655432        12221111111111    234579999999999


Q ss_pred             cCcEEEEEECCcC---cHHHHHHHHhc
Q 017476          321 PGGFFAFETNGEK---QCKFLKNYLEN  344 (371)
Q Consensus       321 pgG~lvle~~~~~---q~~~v~~~l~~  344 (371)
                      |||++++.+....   ..+.|..+++.
T Consensus       369 pgG~lvystcs~~~~Ene~~v~~~l~~  395 (445)
T PRK14904        369 PGGVLVYATCSIEPEENELQIEAFLQR  395 (445)
T ss_pred             CCcEEEEEeCCCChhhHHHHHHHHHHh
Confidence            9999999884332   34455677775

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.56  E-value=1.1e-13  Score=114.84  Aligned_cols=104  Identities=28%  Similarity=0.397  Sum_probs=85.3

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|.++..+++.+ ++.+|+|+|+|+.+++.|++|++.+++. +++++.+|+........++||.|++..
T Consensus        19 ~~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~v~~~~   96 (124)
T TIGR02469        19 PGDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALEDSLPEPDRVFIGG   96 (124)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChhhcCCCCEEEECC
Confidence            45699999999999999999985 6689999999999999999999998876 489999987643333346899999842


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      +                             ...+..+++.+.+.|+|||++++..
T Consensus        97 ~-----------------------------~~~~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        97 S-----------------------------GGLLQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             c-----------------------------chhHHHHHHHHHHHcCCCCEEEEEe
Confidence            1                             1123478999999999999999875

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PLN02244 tocopherol O-methyltransferase

Probab=99.55  E-value=1.7e-13  Score=134.73  Aligned_cols=107  Identities=26%  Similarity=0.313  Sum_probs=86.8

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      .++.+|||+|||+|.++..+++.+  +.+|+|+|+|+.+++.|+++++..++.++++++.+|+.+. +..+++||+|+++
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~-~~~~~~FD~V~s~  193 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ-PFEDGQFDLVWSM  193 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC-CCCCCCccEEEEC
Confidence            356799999999999999999975  5799999999999999999999999887899999998663 3335789999994


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      --              ..|-+            ....+++++.++|||||.+++..
T Consensus       194 ~~--------------~~h~~------------d~~~~l~e~~rvLkpGG~lvi~~  223 (340)
T PLN02244        194 ES--------------GEHMP------------DKRKFVQELARVAAPGGRIIIVT  223 (340)
T ss_pred             Cc--------------hhccC------------CHHHHHHHHHHHcCCCcEEEEEE
Confidence            21              12211            13368888999999999999854

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.55  E-value=5.9e-14  Score=126.87  Aligned_cols=143  Identities=17%  Similarity=0.184  Sum_probs=106.0

Q ss_pred             cccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 017476          157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA  236 (371)
Q Consensus       157 ~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A  236 (371)
                      .|.+..+...++.. -||.+..+.+.+...+..   ...+.+|||++||+|.+++.++.+  ....|++||.++.+++.+
T Consensus        15 ~~kg~~l~~p~~~~-~rpt~~~vrea~f~~l~~---~~~g~~vLDLfaGsG~lglea~sr--ga~~v~~vE~~~~a~~~~   88 (189)
T TIGR00095        15 WRGGRLLKLPPGGS-TRPTTRVVRELFFNILRP---EIQGAHLLDVFAGSGLLGEEALSR--GAKVAFLEEDDRKANQTL   88 (189)
T ss_pred             hhCCcccCCCCCCC-CCCchHHHHHHHHHHHHH---hcCCCEEEEecCCCcHHHHHHHhC--CCCEEEEEeCCHHHHHHH
Confidence            35666666655543 478888888877776621   134679999999999999999986  335899999999999999


Q ss_pred             HHHHHHcCCCCcEEEEEcCcccccccC---CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHH
Q 017476          237 AFNAQRYGLQDIIEIRQGSWFGKLKDV---EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCN  313 (371)
Q Consensus       237 ~~n~~~~gl~~~v~~~~gD~~~~l~~~---~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~  313 (371)
                      ++|++.+++.++++++++|.++.+...   ...||+|+.+|||....     .                  ...+ ..+.
T Consensus        89 ~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~-----~------------------~~~l-~~l~  144 (189)
T TIGR00095        89 KENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNGA-----L------------------QALL-ELCE  144 (189)
T ss_pred             HHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCCCc-----H------------------HHHH-HHHH
Confidence            999999998878999999997654322   12489999999995311     0                  0112 2222


Q ss_pred             HHhcccccCcEEEEEEC
Q 017476          314 GTASMLKPGGFFAFETN  330 (371)
Q Consensus       314 ~a~~~LkpgG~lvle~~  330 (371)
                      . ..+|+++|.+++|+.
T Consensus       145 ~-~~~l~~~~iiv~E~~  160 (189)
T TIGR00095       145 N-NWILEDTVLIVVEED  160 (189)
T ss_pred             H-CCCCCCCeEEEEEec
Confidence            2 458999999999994

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.55  E-value=1.9e-13  Score=133.60  Aligned_cols=164  Identities=18%  Similarity=0.094  Sum_probs=115.2

Q ss_pred             ccccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 017476          156 EHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAV  235 (371)
Q Consensus       156 ~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~  235 (371)
                      .+|++..-.+-..++.|++.++.+.+.+++.. .  -..++.+|||+|||+|.++..+++.+ +..+|+++|+|+++++.
T Consensus        77 ~~~y~~lA~~YD~~~~~~~~~e~~r~~~l~~~-~--l~~~~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~  152 (340)
T PLN02490         77 FWFYRFLSIVYDHIINPGHWTEDMRDDALEPA-D--LSDRNLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAK  152 (340)
T ss_pred             eeEccceeeecCCCeecCcchHHHHHHHHhhc-c--cCCCCCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHH
Confidence            33444333344445557777888887766644 1  11235699999999999999999876 56799999999999999


Q ss_pred             HHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHH
Q 017476          236 AAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGT  315 (371)
Q Consensus       236 A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a  315 (371)
                      |+++...    .+++++.+|+.+ ++...+.||+|++|....              |-+            ....+++++
T Consensus       153 A~~k~~~----~~i~~i~gD~e~-lp~~~~sFDvVIs~~~L~--------------~~~------------d~~~~L~e~  201 (340)
T PLN02490        153 AKQKEPL----KECKIIEGDAED-LPFPTDYADRYVSAGSIE--------------YWP------------DPQRGIKEA  201 (340)
T ss_pred             HHHhhhc----cCCeEEeccHHh-CCCCCCceeEEEEcChhh--------------hCC------------CHHHHHHHH
Confidence            9998642    247899999865 332346899999964432              111            122678999


Q ss_pred             hcccccCcEEEEEECC----------------cCcHHHHHHHHhccccCCceeEEEEe
Q 017476          316 ASMLKPGGFFAFETNG----------------EKQCKFLKNYLENDSACSFCNVSIVS  357 (371)
Q Consensus       316 ~~~LkpgG~lvle~~~----------------~~q~~~v~~~l~~~~~~gf~~v~~~~  357 (371)
                      .+.|+|||.+++....                ..+.+++.+++++   .||..+++..
T Consensus       202 ~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~---aGF~~V~i~~  256 (340)
T PLN02490        202 YRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTK---AGFKDVKLKR  256 (340)
T ss_pred             HHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHH---CCCeEEEEEE
Confidence            9999999998774311                1245777888885   7899888743

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.55  E-value=1.6e-13  Score=124.36  Aligned_cols=129  Identities=21%  Similarity=0.279  Sum_probs=95.9

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|.+++.+++.. ++.+|+|+|+|+++++.|++|++.+++. +++++.+|..+.+......+|.++.+.
T Consensus        40 ~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~d~v~~~~  117 (196)
T PRK07402         40 PDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEGSAPECLAQLAPAPDRVCIEG  117 (196)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEECchHHHHhhCCCCCCEEEEEC
Confidence            46799999999999999999764 6789999999999999999999999885 499999998653332223456555420


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEE
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVS  354 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~  354 (371)
                                                +    ..+..+++.+.++|+|||.+++......+...+.+.+++....++..++
T Consensus       118 --------------------------~----~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (196)
T PRK07402        118 --------------------------G----RPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQARNIEVVQ  167 (196)
T ss_pred             --------------------------C----cCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCCCCceEEE
Confidence                                      0    1134788888999999999999986555555566666653234565555


Q ss_pred             E
Q 017476          355 I  355 (371)
Q Consensus       355 ~  355 (371)
                      +
T Consensus       168 ~  168 (196)
T PRK07402        168 A  168 (196)
T ss_pred             E
Confidence            5

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.55  E-value=1.8e-13  Score=138.78  Aligned_cols=165  Identities=20%  Similarity=0.254  Sum_probs=117.6

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---cCCCceeEE
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---DVEGKLSGV  270 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---~~~~~fDlI  270 (371)
                      .++.+|||+|||+|..+..+++..++.++|+|+|+++.+++.+++|++++|+.+ ++++++|..+...   ...++||.|
T Consensus       251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~~~fD~V  329 (434)
T PRK14901        251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS-IKILAADSRNLLELKPQWRGYFDRI  329 (434)
T ss_pred             CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCChhhcccccccccccCCEE
Confidence            346799999999999999999976556799999999999999999999999975 9999999865431   123689999


Q ss_pred             EEcCCCCCCCCcccchhhhcccCccccccCCCCcH----HHHHHHHHHHhcccccCcEEEEEECC---cCcHHHHHHHHh
Q 017476          271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGL----DYLLHLCNGTASMLKPGGFFAFETNG---EKQCKFLKNYLE  343 (371)
Q Consensus       271 vsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl----~~~~~il~~a~~~LkpgG~lvle~~~---~~q~~~v~~~l~  343 (371)
                      ++|||+...+.+.        +.|...+.-....+    ..-..+++.+.+.|||||.+++.+..   ....+.|..+++
T Consensus       330 l~DaPCSg~G~~~--------r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~  401 (434)
T PRK14901        330 LLDAPCSGLGTLH--------RHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLA  401 (434)
T ss_pred             EEeCCCCcccccc--------cCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHH
Confidence            9999986544332        22221111111111    12358999999999999999887632   244556677777


Q ss_pred             ccccCCceeEE----EEecCCCCceEEEEE
Q 017476          344 NDSACSFCNVS----IVSDFAGIQRFVTGF  369 (371)
Q Consensus       344 ~~~~~gf~~v~----~~~Dl~g~~R~~~a~  369 (371)
                      +.  .+|.-+.    ++++..|.+=|.+|+
T Consensus       402 ~~--~~~~~~~~~~~~~P~~~~~dGfF~a~  429 (434)
T PRK14901        402 RH--PDWKLEPPKQKIWPHRQDGDGFFMAV  429 (434)
T ss_pred             hC--CCcEecCCCCccCCCCCCCCcEEEEE
Confidence            63  4575332    455566777777764

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.54  E-value=3.4e-13  Score=119.78  Aligned_cols=120  Identities=23%  Similarity=0.306  Sum_probs=98.2

Q ss_pred             CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEE
Q 017476          192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV  271 (371)
Q Consensus       192 ~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIv  271 (371)
                      ...++.+++|+|||||.+++.++.. +|..+|+|+|.++++++..++|+++.|++ +++++.||.-+.+.... ++|.|+
T Consensus        31 ~~~~g~~l~DIGaGtGsi~iE~a~~-~p~~~v~AIe~~~~a~~~~~~N~~~fg~~-n~~vv~g~Ap~~L~~~~-~~daiF  107 (187)
T COG2242          31 RPRPGDRLWDIGAGTGSITIEWALA-GPSGRVIAIERDEEALELIERNAARFGVD-NLEVVEGDAPEALPDLP-SPDAIF  107 (187)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHh-CCCceEEEEecCHHHHHHHHHHHHHhCCC-cEEEEeccchHhhcCCC-CCCEEE
Confidence            4456789999999999999999964 69999999999999999999999999965 59999999988877643 788888


Q ss_pred             EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhc
Q 017476          272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLEN  344 (371)
Q Consensus       272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~  344 (371)
                      .+                           |.   ..+..+++.+..+|+|||++++.....+......+.+++
T Consensus       108 IG---------------------------Gg---~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~  150 (187)
T COG2242         108 IG---------------------------GG---GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQ  150 (187)
T ss_pred             EC---------------------------CC---CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHH
Confidence            62                           21   234578899999999999999988544455555566665

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.54  E-value=3.2e-13  Score=136.60  Aligned_cols=142  Identities=15%  Similarity=0.253  Sum_probs=104.4

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc-cCCCceeEEEEc
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-DVEGKLSGVVSN  273 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~-~~~~~fDlIvsN  273 (371)
                      ++.+|||+|||+|..+..+++.. +.++|+|+|+++.+++.+++|+++.|+..++.+..+|...... ...++||.|++|
T Consensus       238 ~g~~VLDlcag~G~kt~~la~~~-~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllD  316 (426)
T TIGR00563       238 NEETILDACAAPGGKTTHILELA-PQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLD  316 (426)
T ss_pred             CCCeEEEeCCCccHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEc
Confidence            56799999999999999999986 4689999999999999999999999987455667788754321 013679999999


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcH----HHHHHHHHHHhcccccCcEEEEEECCc---CcHHHHHHHHhcc
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGL----DYLLHLCNGTASMLKPGGFFAFETNGE---KQCKFLKNYLEND  345 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl----~~~~~il~~a~~~LkpgG~lvle~~~~---~q~~~v~~~l~~~  345 (371)
                      ||+...+.+..        .|........+.+    ..-+.++..+.++|||||.+++.+...   ...+.|..++++.
T Consensus       317 aPcSg~G~~~~--------~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~  387 (426)
T TIGR00563       317 APCSATGVIRR--------HPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEH  387 (426)
T ss_pred             CCCCCCccccc--------CcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhC
Confidence            99987655432        2222211111111    234689999999999999999976433   3555667777753

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.53  E-value=2.3e-13  Score=124.50  Aligned_cols=116  Identities=21%  Similarity=0.315  Sum_probs=90.3

Q ss_pred             HHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcc
Q 017476          178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF  257 (371)
Q Consensus       178 ~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~  257 (371)
                      .++..+++.+    ...++.+|||+|||+|.++..+++.+++.++|+++|+++++++.|++|+..+++.++++++.+|..
T Consensus        59 ~~~~~~~~~l----~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~  134 (205)
T PRK13944         59 HMVAMMCELI----EPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGK  134 (205)
T ss_pred             HHHHHHHHhc----CCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcc
Confidence            3455555554    223467999999999999999998765567999999999999999999999998777999999997


Q ss_pred             cccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC
Q 017476          258 GKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN  330 (371)
Q Consensus       258 ~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~  330 (371)
                      +.+.. .++||+|+++-...                                .+.+.+.+.|+|||++++-..
T Consensus       135 ~~~~~-~~~fD~Ii~~~~~~--------------------------------~~~~~l~~~L~~gG~lvi~~~  174 (205)
T PRK13944        135 RGLEK-HAPFDAIIVTAAAS--------------------------------TIPSALVRQLKDGGVLVIPVE  174 (205)
T ss_pred             cCCcc-CCCccEEEEccCcc--------------------------------hhhHHHHHhcCcCcEEEEEEc
Confidence            65543 46899999964321                                122345578999999998773

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=99.52  E-value=6.7e-13  Score=126.89  Aligned_cols=207  Identities=20%  Similarity=0.305  Sum_probs=108.8

Q ss_pred             cceee-EeeCCccccc-chHHHHHHHHHHHhhhcCC-CCCCCeEEEECCcccHHH-HHHHHHhCCCcEEEEEeCCHHHHH
Q 017476          159 RDLVL-SVEEGVFIPR-PETELMVDLVSDVLVRDND-GLRDGFWVDLGTGSGAIA-IGIARVLGSKGSIIAVDLNPLAAA  234 (371)
Q Consensus       159 ~~~~~-~v~~~vliPr-p~te~lv~~~~~~~~~~~~-~~~~~~VLDlG~GsG~~a-l~la~~~~~~~~V~gvDis~~al~  234 (371)
                      +++++ .+.++.|.|. |.---++.++.+.+..... .....++||+|||..++- +..++.  .+++++|+|+++.+++
T Consensus        63 fgl~~wdiP~~~LcP~iP~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~--~~W~fvaTdID~~sl~  140 (299)
T PF05971_consen   63 FGLDVWDIPEGRLCPPIPNRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKL--YGWSFVATDIDPKSLE  140 (299)
T ss_dssp             H--------TTS----HHHHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHH--H--EEEEEES-HHHHH
T ss_pred             cCCccccCCCCCcCCCCchhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhh--cCCeEEEecCCHHHHH
Confidence            46776 7889999997 6666777888777732211 112458999999999874 444444  3799999999999999


Q ss_pred             HHHHHHHHc-CCCCcEEEEEcC----cccccccCCCceeEEEEcCCCCCCCCcccch--hhh---cc-----cCcccccc
Q 017476          235 VAAFNAQRY-GLQDIIEIRQGS----WFGKLKDVEGKLSGVVSNPPYIPSDDISGLQ--VEV---GK-----HEPRLALD  299 (371)
Q Consensus       235 ~A~~n~~~~-gl~~~v~~~~gD----~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~--~ev---~~-----~ep~~aL~  299 (371)
                      .|++|++++ +++++|+++...    ++..+....+.||+.+|||||..+.+-..-.  ...   .+     ..|..+..
T Consensus       141 ~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftmCNPPFy~s~~e~~~~~~~k~~nl~~~~~~~~~p~~~~~  220 (299)
T PF05971_consen  141 SARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTMCNPPFYSSQEEAEAGTERKWKNLGRPNKKRSPPKLNFT  220 (299)
T ss_dssp             HHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEEE-----SS------------------------------
T ss_pred             HHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEecCCccccChhhhcccccccccccccccccccCccccCC
Confidence            999999999 999999998653    4444433356899999999998765422110  010   01     14555544


Q ss_pred             CCCCc-------HHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEecC-CCCceEEEEEe
Q 017476          300 GGVDG-------LDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDF-AGIQRFVTGFR  370 (371)
Q Consensus       300 gg~dG-------l~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl-~g~~R~~~a~~  370 (371)
                      |...-       +.++.+++++...+=+.=.|+---++.......+.+.|++.   +-.++.+..-. ....|.++|+.
T Consensus       221 G~~~El~~~GGEv~FV~rMI~ES~~~~~~v~WfTsmvgKkssL~~l~~~L~~~---~~~~~~~~e~~QG~t~rw~lAWs  296 (299)
T PF05971_consen  221 GQSNELWCEGGEVAFVKRMIKESLQLKDQVRWFTSMVGKKSSLKPLKKELKKL---GATNYKVTEMCQGQTKRWILAWS  296 (299)
T ss_dssp             --TTTTHHHHTHHHHHHHHHHHHHHHGGGEEEEEEEESSGGGHHHHHHHHHHT---T-SEEEEEEEEETTEEEEEEEEE
T ss_pred             CCcceEEcCCccHHHHHHHHHHHHHhCCCcEEEeecccCcccHHHHHHHHHhc---CCceEEEEEccCCceEEEEEEEe
Confidence            43322       57888999888755443333333445566778888888863   44455444333 34678888874

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.52  E-value=2.5e-13  Score=124.99  Aligned_cols=115  Identities=19%  Similarity=0.266  Sum_probs=89.4

Q ss_pred             HHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcc
Q 017476          178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF  257 (371)
Q Consensus       178 ~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~  257 (371)
                      .++..+++.+    ...++.+|||+|||+|.++..+++..++.++|+++|+++++++.|++|++.+++. +++++.+|..
T Consensus        64 ~~~~~~~~~l----~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~-~v~~~~~d~~  138 (215)
T TIGR00080        64 HMVAMMTELL----ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD-NVIVIVGDGT  138 (215)
T ss_pred             HHHHHHHHHh----CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CeEEEECCcc
Confidence            3455555555    2345679999999999999999998645678999999999999999999999985 5999999997


Q ss_pred             cccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC
Q 017476          258 GKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN  330 (371)
Q Consensus       258 ~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~  330 (371)
                      +.... .++||+|+++++..                                .+.+.+.+.|+|||++++-.+
T Consensus       139 ~~~~~-~~~fD~Ii~~~~~~--------------------------------~~~~~~~~~L~~gG~lv~~~~  178 (215)
T TIGR00080       139 QGWEP-LAPYDRIYVTAAGP--------------------------------KIPEALIDQLKEGGILVMPVG  178 (215)
T ss_pred             cCCcc-cCCCCEEEEcCCcc--------------------------------cccHHHHHhcCcCcEEEEEEc
Confidence            65433 36899999975421                                112334578999999999873

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.52  E-value=1.9e-13  Score=128.97  Aligned_cols=106  Identities=20%  Similarity=0.210  Sum_probs=84.9

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      .+.+|||+|||+|.++..+++.   +.+|+|+|+|+++++.|++++...++.++++++++|+.+......++||+|+++-
T Consensus        44 ~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~  120 (255)
T PRK11036         44 RPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA  120 (255)
T ss_pred             CCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence            4569999999999999999985   4799999999999999999999998877899999998653322347899999953


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      .+              .|            +.....+++.+.++|||||.+++..
T Consensus       121 vl--------------~~------------~~~~~~~l~~~~~~LkpgG~l~i~~  149 (255)
T PRK11036        121 VL--------------EW------------VADPKSVLQTLWSVLRPGGALSLMF  149 (255)
T ss_pred             HH--------------Hh------------hCCHHHHHHHHHHHcCCCeEEEEEE
Confidence            32              11            1112367888999999999998753

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.51  E-value=6.9e-13  Score=126.14  Aligned_cols=132  Identities=28%  Similarity=0.365  Sum_probs=100.2

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|..++.+++.+++..+|+|+|+++.+++.|++|....++. +++++.+|+.+ ++..++.||+|++|-
T Consensus        77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~-l~~~~~~fD~Vi~~~  154 (272)
T PRK11873         77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEA-LPVADNSVDVIISNC  154 (272)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhh-CCCCCCceeEEEEcC
Confidence            4679999999999998888887656679999999999999999999988875 59999999865 332346899999974


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC----------------------Cc
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN----------------------GE  332 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~----------------------~~  332 (371)
                      -+.              +.|            ....+++++.++|||||++++...                      +.
T Consensus       155 v~~--------------~~~------------d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (272)
T PRK11873        155 VIN--------------LSP------------DKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGA  208 (272)
T ss_pred             ccc--------------CCC------------CHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCC
Confidence            321              111            123678889999999999998421                      12


Q ss_pred             CcHHHHHHHHhccccCCceeEEEEe
Q 017476          333 KQCKFLKNYLENDSACSFCNVSIVS  357 (371)
Q Consensus       333 ~q~~~v~~~l~~~~~~gf~~v~~~~  357 (371)
                      .+.+++.+++++   .||..+++..
T Consensus       209 ~~~~e~~~~l~~---aGf~~v~i~~  230 (272)
T PRK11873        209 LQEEEYLAMLAE---AGFVDITIQP  230 (272)
T ss_pred             CCHHHHHHHHHH---CCCCceEEEe
Confidence            345567777775   6898876643

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.51  E-value=2.4e-13  Score=126.92  Aligned_cols=119  Identities=18%  Similarity=0.287  Sum_probs=95.5

Q ss_pred             hHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q 017476          175 ETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG  254 (371)
Q Consensus       175 ~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~g  254 (371)
                      ++..++..+....       ++++|||+|||+|..++.++..+.++++|+++|+++++++.|++|++.+|+.++++++.+
T Consensus        55 ~~g~~L~~l~~~~-------~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~g  127 (234)
T PLN02781         55 DEGLFLSMLVKIM-------NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQS  127 (234)
T ss_pred             HHHHHHHHHHHHh-------CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc
Confidence            4445555555443       466999999999999999998775678999999999999999999999999989999999


Q ss_pred             CcccccccC-----CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          255 SWFGKLKDV-----EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       255 D~~~~l~~~-----~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      |+.+.++..     .++||+|+.|.+                             -..|..+++.+.+.|+|||.+++..
T Consensus       128 da~~~L~~l~~~~~~~~fD~VfiDa~-----------------------------k~~y~~~~~~~~~ll~~GG~ii~dn  178 (234)
T PLN02781        128 DALSALDQLLNNDPKPEFDFAFVDAD-----------------------------KPNYVHFHEQLLKLVKVGGIIAFDN  178 (234)
T ss_pred             cHHHHHHHHHhCCCCCCCCEEEECCC-----------------------------HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence            998765432     368999998632                             1234467788889999999999854

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=99.50  E-value=4.3e-13  Score=119.70  Aligned_cols=146  Identities=22%  Similarity=0.322  Sum_probs=112.2

Q ss_pred             cccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 017476          157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA  236 (371)
Q Consensus       157 ~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A  236 (371)
                      .|.+..+.+.++-- -||.|..+-+.+-.++...  ...+.++||+.+|||++++.++.+  ...+++.||.|..++...
T Consensus         8 ~~kgr~L~~p~~~~-~RPT~drVREalFNil~~~--~i~g~~~LDlFAGSGaLGlEAlSR--GA~~~~~vE~~~~a~~~l   82 (187)
T COG0742           8 KYKGRKLKTPDGPG-TRPTTDRVREALFNILAPD--EIEGARVLDLFAGSGALGLEALSR--GAARVVFVEKDRKAVKIL   82 (187)
T ss_pred             cccCCcccCCCCCC-cCCCchHHHHHHHHhcccc--ccCCCEEEEecCCccHhHHHHHhC--CCceEEEEecCHHHHHHH
Confidence            45677777766532 3889999999988888221  256889999999999999999986  467999999999999999


Q ss_pred             HHHHHHcCCCCcEEEEEcCcccccccCCCc--eeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHH
Q 017476          237 AFNAQRYGLQDIIEIRQGSWFGKLKDVEGK--LSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNG  314 (371)
Q Consensus       237 ~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~--fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~  314 (371)
                      ++|++..++..+++++..|....+.....+  ||+|+.+|||-.. .   ++.                   ...-+.-.
T Consensus        83 ~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~-l---~~~-------------------~~~~~~~~  139 (187)
T COG0742          83 KENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAKG-L---LDK-------------------ELALLLLE  139 (187)
T ss_pred             HHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCCCccc-h---hhH-------------------HHHHHHHH
Confidence            999999998888999999998665544444  9999999999611 0   000                   01111112


Q ss_pred             HhcccccCcEEEEEEC
Q 017476          315 TASMLKPGGFFAFETN  330 (371)
Q Consensus       315 a~~~LkpgG~lvle~~  330 (371)
                      -..+|+|+|.+++|++
T Consensus       140 ~~~~L~~~~~iv~E~~  155 (187)
T COG0742         140 ENGWLKPGALIVVEHD  155 (187)
T ss_pred             hcCCcCCCcEEEEEeC
Confidence            4578999999999994

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=99.50  E-value=8.3e-13  Score=118.36  Aligned_cols=152  Identities=22%  Similarity=0.214  Sum_probs=101.7

Q ss_pred             ccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcE---------EEEEeCCHHHHHHHHHHHHH
Q 017476          172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGS---------IIAVDLNPLAAAVAAFNAQR  242 (371)
Q Consensus       172 Prp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~---------V~gvDis~~al~~A~~n~~~  242 (371)
                      |.+-.+.+...++...    ...++..++|..||||.+.+..+... .+..         ++|+|+++++++.|++|++.
T Consensus         9 ~a~L~~~lA~~ll~la----~~~~~~~vlDP~CGsGtiliEaa~~~-~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~   83 (179)
T PF01170_consen    9 PAPLRPTLAAALLNLA----GWRPGDVVLDPFCGSGTILIEAALMG-ANIPPLNDINELKIIGSDIDPKAVRGARENLKA   83 (179)
T ss_dssp             STSS-HHHHHHHHHHT----T--TTS-EEETT-TTSHHHHHHHHHH-TTTSTTTH-CH--EEEEESSHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHh----CCCCCCEEeecCCCCCHHHHHHHHHh-hCcccccccccccEEecCCCHHHHHHHHHHHHh
Confidence            4455566666666554    23356799999999999999998875 4444         89999999999999999999


Q ss_pred             cCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccC
Q 017476          243 YGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPG  322 (371)
Q Consensus       243 ~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~Lkpg  322 (371)
                      .++.+.+.+.+.|+.+.. ...+.+|.||+||||...-..   ..               +....|+.+++.+.+.|++ 
T Consensus        84 ag~~~~i~~~~~D~~~l~-~~~~~~d~IvtnPPyG~r~~~---~~---------------~~~~ly~~~~~~~~~~l~~-  143 (179)
T PF01170_consen   84 AGVEDYIDFIQWDARELP-LPDGSVDAIVTNPPYGRRLGS---KK---------------DLEKLYRQFLRELKRVLKP-  143 (179)
T ss_dssp             TT-CGGEEEEE--GGGGG-GTTSBSCEEEEE--STTSHCH---HH---------------HHHHHHHHHHHHHHCHSTT-
T ss_pred             cccCCceEEEecchhhcc-cccCCCCEEEECcchhhhccC---HH---------------HHHHHHHHHHHHHHHHCCC-
Confidence            999988999999997643 335789999999999643110   00               1146788999999999999 


Q ss_pred             cEEEEEECCcCcHHHHHHHHhccccCCceeEEE
Q 017476          323 GFFAFETNGEKQCKFLKNYLENDSACSFCNVSI  355 (371)
Q Consensus       323 G~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~  355 (371)
                      ..+++.. +...   +.+.+..   .++...+.
T Consensus       144 ~~v~l~~-~~~~---~~~~~~~---~~~~~~~~  169 (179)
T PF01170_consen  144 RAVFLTT-SNRE---LEKALGL---KGWRKRKL  169 (179)
T ss_dssp             CEEEEEE-SCCC---HHHHHTS---TTSEEEEE
T ss_pred             CEEEEEE-CCHH---HHHHhcc---hhhceEEE
Confidence            4444444 3332   4555553   34544443

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.50  E-value=3.9e-13  Score=124.43  Aligned_cols=128  Identities=22%  Similarity=0.336  Sum_probs=111.6

Q ss_pred             CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEE
Q 017476          192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV  271 (371)
Q Consensus       192 ~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIv  271 (371)
                      ...++.+|+|.|+|||+++.+||+.+++.++|+.+|+.++.++.|++|++..++.+++.+..+|..+....  ..||.|+
T Consensus        91 gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~--~~vDav~  168 (256)
T COG2519          91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE--EDVDAVF  168 (256)
T ss_pred             CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc--cccCEEE
Confidence            45578899999999999999999988888999999999999999999999999999999999999887654  4899999


Q ss_pred             EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCce
Q 017476          272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFC  351 (371)
Q Consensus       272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~  351 (371)
                      .+-|=                 |.              ..++.+.+.|+|||.+++-.+...|.+.+...|++   .||.
T Consensus       169 LDmp~-----------------PW--------------~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~---~g~~  214 (256)
T COG2519         169 LDLPD-----------------PW--------------NVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRE---RGFV  214 (256)
T ss_pred             EcCCC-----------------hH--------------HHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHh---cCcc
Confidence            96441                 11              67888999999999999999888898888888886   5788


Q ss_pred             eEEE
Q 017476          352 NVSI  355 (371)
Q Consensus       352 ~v~~  355 (371)
                      +++.
T Consensus       215 ~ie~  218 (256)
T COG2519         215 DIEA  218 (256)
T ss_pred             chhh
Confidence            7654

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.49  E-value=6.7e-13  Score=124.31  Aligned_cols=132  Identities=23%  Similarity=0.326  Sum_probs=105.9

Q ss_pred             CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccc-cc-cCCCceeE
Q 017476          192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK-LK-DVEGKLSG  269 (371)
Q Consensus       192 ~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~-l~-~~~~~fDl  269 (371)
                      +..++.+|+|.|+|||+++.++++.++|.++|+..|..++..+.|++|++.+|+.+++++.+.|+.+. .. ..+..+|.
T Consensus        37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Da  116 (247)
T PF08704_consen   37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDA  116 (247)
T ss_dssp             T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEE
T ss_pred             CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccE
Confidence            55678899999999999999999999899999999999999999999999999998999999999643 21 22468999


Q ss_pred             EEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhccc-ccCcEEEEEECCcCcHHHHHHHHhccccC
Q 017476          270 VVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASML-KPGGFFAFETNGEKQCKFLKNYLENDSAC  348 (371)
Q Consensus       270 IvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~L-kpgG~lvle~~~~~q~~~v~~~l~~~~~~  348 (371)
                      |+.+-|-                 |.              ..+..+.+.| ++||++++-.+...|.+.+.+.|++   .
T Consensus       117 vfLDlp~-----------------Pw--------------~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~---~  162 (247)
T PF08704_consen  117 VFLDLPD-----------------PW--------------EAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALRE---H  162 (247)
T ss_dssp             EEEESSS-----------------GG--------------GGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHH---T
T ss_pred             EEEeCCC-----------------HH--------------HHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHH---C
Confidence            9997552                 22              3556777889 8999999999888888888888886   6


Q ss_pred             CceeEEEEe
Q 017476          349 SFCNVSIVS  357 (371)
Q Consensus       349 gf~~v~~~~  357 (371)
                      ||.+|+++-
T Consensus       163 gf~~i~~~E  171 (247)
T PF08704_consen  163 GFTDIETVE  171 (247)
T ss_dssp             TEEEEEEEE
T ss_pred             CCeeeEEEE
Confidence            899887653

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.49  E-value=5.9e-13  Score=131.95  Aligned_cols=142  Identities=19%  Similarity=0.275  Sum_probs=107.4

Q ss_pred             eeeEeeCCcccc--cchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476          161 LVLSVEEGVFIP--RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       161 ~~~~v~~~vliP--rp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~  238 (371)
                      +.|.++++.|+.  +..++.+++++.+++ .   . .+.++||++||+|.+++.+++..   .+|+|||+++.+++.|++
T Consensus       175 ~~~~~~~~sF~Q~N~~~~e~l~~~v~~~~-~---~-~~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~  246 (362)
T PRK05031        175 FIYRQVENSFTQPNAAVNEKMLEWALDAT-K---G-SKGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQY  246 (362)
T ss_pred             EEEEeCCCCeeccCHHHHHHHHHHHHHHh-h---c-CCCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHH
Confidence            678889999984  466889999988876 2   1 12479999999999999999863   589999999999999999


Q ss_pred             HHHHcCCCCcEEEEEcCcccccccC---------------CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCC
Q 017476          239 NAQRYGLQDIIEIRQGSWFGKLKDV---------------EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVD  303 (371)
Q Consensus       239 n~~~~gl~~~v~~~~gD~~~~l~~~---------------~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~d  303 (371)
                      |+..+++. +++++.+|+.+.+...               ..+||+|+.||||..      +..                
T Consensus       247 N~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G------~~~----------------  303 (362)
T PRK05031        247 NIAANGID-NVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAG------LDD----------------  303 (362)
T ss_pred             HHHHhCCC-cEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCC------CcH----------------
Confidence            99999986 5999999987654321               125899999999831      111                


Q ss_pred             cHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHH
Q 017476          304 GLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYL  342 (371)
Q Consensus       304 Gl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l  342 (371)
                            .+++.+.+   ++++++++++.......+..+.
T Consensus       304 ------~~l~~l~~---~~~ivyvSC~p~tlarDl~~L~  333 (362)
T PRK05031        304 ------ETLKLVQA---YERILYISCNPETLCENLETLS  333 (362)
T ss_pred             ------HHHHHHHc---cCCEEEEEeCHHHHHHHHHHHc
Confidence                  23333322   6899999997655555555543

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.48  E-value=9.2e-13  Score=118.65  Aligned_cols=138  Identities=23%  Similarity=0.302  Sum_probs=97.2

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc-------ccCCCc
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL-------KDVEGK  266 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l-------~~~~~~  266 (371)
                      .++.+|||+|||+|.++..+++.+.+..+|+|+|+|+.+           ... +++++++|+.+..       ....++
T Consensus        31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~-~i~~~~~d~~~~~~~~~l~~~~~~~~   98 (188)
T TIGR00438        31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIE-NVDFIRGDFTDEEVLNKIRERVGDDK   98 (188)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCC-CceEEEeeCCChhHHHHHHHHhCCCC
Confidence            457799999999999999999876456789999999854           122 3889999986531       011357


Q ss_pred             eeEEEEcC--CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhc
Q 017476          267 LSGVVSNP--PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLEN  344 (371)
Q Consensus       267 fDlIvsNP--PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~  344 (371)
                      ||+|++|+  ++........+.                 .++....+++.+.+.|+|||.+++++........+...+++
T Consensus        99 ~D~V~~~~~~~~~g~~~~~~~~-----------------~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~  161 (188)
T TIGR00438        99 VDVVMSDAAPNISGYWDIDHLR-----------------SIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRK  161 (188)
T ss_pred             ccEEEcCCCCCCCCCccccHHH-----------------HHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHh
Confidence            99999985  332111110000                 02335678999999999999999987444455556666653


Q ss_pred             cccCCceeEEEEecCCCCce
Q 017476          345 DSACSFCNVSIVSDFAGIQR  364 (371)
Q Consensus       345 ~~~~gf~~v~~~~Dl~g~~R  364 (371)
                          .|..+++++|+.|+.+
T Consensus       162 ----~~~~~~~~~~~~~~~~  177 (188)
T TIGR00438       162 ----LFEKVKVTKPQASRKR  177 (188)
T ss_pred             ----hhceEEEeCCCCCCcc
Confidence                4889999999999764

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.47  E-value=7.2e-13  Score=129.00  Aligned_cols=105  Identities=23%  Similarity=0.308  Sum_probs=83.8

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|.++..+++.   +.+|+|||+++++++.|++++...+...+++++++|+.+ +....++||+|++  
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~-l~~~~~~FD~Vi~--  204 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEK-LADEGRKFDAVLS--  204 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHH-hhhccCCCCEEEE--
Confidence            4569999999999999999873   579999999999999999988776655579999999854 3333478999999  


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                                  .++..|-+            ....+++.+.++|||||.+++..
T Consensus       205 ------------~~vLeHv~------------d~~~~L~~l~r~LkPGG~liist  235 (322)
T PLN02396        205 ------------LEVIEHVA------------NPAEFCKSLSALTIPNGATVLST  235 (322)
T ss_pred             ------------hhHHHhcC------------CHHHHHHHHHHHcCCCcEEEEEE
Confidence                        23444422            23478888999999999999875

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.47  E-value=3.4e-12  Score=113.24  Aligned_cols=141  Identities=21%  Similarity=0.326  Sum_probs=96.0

Q ss_pred             cccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 017476          171 IPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIE  250 (371)
Q Consensus       171 iPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~  250 (371)
                      +|.+.+..++..+. .    .....++.|+|+|||||.+++.++..  ...+|+|||+++++++.+++|+.+.  ..++.
T Consensus        26 Tp~~~Aa~il~~a~-~----~g~l~g~~V~DlG~GTG~La~ga~~l--Ga~~V~~vdiD~~a~ei~r~N~~~l--~g~v~   96 (198)
T COG2263          26 TPAPLAAYILWVAY-L----RGDLEGKTVLDLGAGTGILAIGAALL--GASRVLAVDIDPEALEIARANAEEL--LGDVE   96 (198)
T ss_pred             CChHHHHHHHHHHH-H----cCCcCCCEEEEcCCCcCHHHHHHHhc--CCcEEEEEecCHHHHHHHHHHHHhh--CCceE
Confidence            34444444444433 1    23456778999999999999999884  4579999999999999999999983  35699


Q ss_pred             EEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC
Q 017476          251 IRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN  330 (371)
Q Consensus       251 ~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~  330 (371)
                      |+.+|..+.    .+++|.+++||||...          .+| ++         .    .++..|.+.-    -++..++
T Consensus        97 f~~~dv~~~----~~~~dtvimNPPFG~~----------~rh-aD---------r----~Fl~~Ale~s----~vVYsiH  144 (198)
T COG2263          97 FVVADVSDF----RGKFDTVIMNPPFGSQ----------RRH-AD---------R----PFLLKALEIS----DVVYSIH  144 (198)
T ss_pred             EEEcchhhc----CCccceEEECCCCccc----------ccc-CC---------H----HHHHHHHHhh----heEEEee
Confidence            999998553    4789999999999643          122 11         1    3444443332    3455554


Q ss_pred             CcCcHHHHHHHHhccccCCceeEEE
Q 017476          331 GEKQCKFLKNYLENDSACSFCNVSI  355 (371)
Q Consensus       331 ~~~q~~~v~~~l~~~~~~gf~~v~~  355 (371)
                      .....+.+.+....   .|+....+
T Consensus       145 ~a~~~~f~~~~~~~---~G~~v~~~  166 (198)
T COG2263         145 KAGSRDFVEKFAAD---LGGTVTHI  166 (198)
T ss_pred             ccccHHHHHHHHHh---cCCeEEEE
Confidence            56666677777765   55544333

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.47  E-value=6.2e-13  Score=125.95  Aligned_cols=108  Identities=25%  Similarity=0.298  Sum_probs=91.6

Q ss_pred             CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEE
Q 017476          192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV  271 (371)
Q Consensus       192 ~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIv  271 (371)
                      ...++.+|||+|||.|.+++.+|+++  +.+|+|+++|+++.+.+++.++..|++++++++..|+.+.    .++||-||
T Consensus        69 ~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~----~e~fDrIv  142 (283)
T COG2230          69 GLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF----EEPFDRIV  142 (283)
T ss_pred             CCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc----ccccceee
Confidence            55678899999999999999999986  7899999999999999999999999998899999999653    35699999


Q ss_pred             EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      |              -++..|          -|.+.+..+++.+.++|+|||.+++..
T Consensus       143 S--------------vgmfEh----------vg~~~~~~ff~~~~~~L~~~G~~llh~  176 (283)
T COG2230         143 S--------------VGMFEH----------VGKENYDDFFKKVYALLKPGGRMLLHS  176 (283)
T ss_pred             e--------------hhhHHH----------hCcccHHHHHHHHHhhcCCCceEEEEE
Confidence            9              111111          134567789999999999999998865

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.46  E-value=6.4e-12  Score=116.15  Aligned_cols=147  Identities=21%  Similarity=0.280  Sum_probs=110.9

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|.++..++...++..+++++|+++.+++.+++++..++..+++.++.+|+.+.. ...+.||+|+++-
T Consensus        51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~I~~~~  129 (239)
T PRK00216         51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP-FPDNSFDAVTIAF  129 (239)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC-CCCCCccEEEEec
Confidence            457999999999999999999752268999999999999999999887766667999999987643 2246899999831


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCc-C--------------------
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGE-K--------------------  333 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~-~--------------------  333 (371)
                      -.              .+            ......+++.+.+.|+|||.+++..... .                    
T Consensus       130 ~l--------------~~------------~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (239)
T PRK00216        130 GL--------------RN------------VPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIG  183 (239)
T ss_pred             cc--------------cc------------CCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHH
Confidence            10              11            1123467888899999999887642111 0                    


Q ss_pred             ---------------------cHHHHHHHHhccccCCceeEEEEecCCCCceEEEEEeC
Q 017476          334 ---------------------QCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFRQ  371 (371)
Q Consensus       334 ---------------------q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~~~  371 (371)
                                           ..+.+.+++++   .||..+++.....|.--+++|+|+
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---aGf~~~~~~~~~~~~~~~~~~~~~  239 (239)
T PRK00216        184 KLISKNAEAYSYLAESIRAFPDQEELAAMLEE---AGFERVRYRNLTGGIVALHVGYKP  239 (239)
T ss_pred             HHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHh---CCCceeeeeeeecCcEEEEEEecC
Confidence                                 12345666765   889999999988898888888875

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.46  E-value=2.1e-12  Score=124.12  Aligned_cols=103  Identities=18%  Similarity=0.187  Sum_probs=81.6

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++++|||+|||+|..++.+++.   +.+|+|+|+|+.+++.+++|+...++  ++++...|+.+..  ..++||+|+++.
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~--~~~~fD~I~~~~  192 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSAS--IQEEYDFILSTV  192 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhccc--ccCCccEEEEcc
Confidence            3569999999999999999984   57999999999999999999998887  3888888886532  247899999964


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE  328 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle  328 (371)
                      .+.      .+.                  -+....+++.+.++|+|||++++.
T Consensus       193 vl~------~l~------------------~~~~~~~l~~~~~~LkpgG~~l~v  222 (287)
T PRK12335        193 VLM------FLN------------------RERIPAIIKNMQEHTNPGGYNLIV  222 (287)
T ss_pred             hhh------hCC------------------HHHHHHHHHHHHHhcCCCcEEEEE
Confidence            321      010                  123457889999999999996653

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.46  E-value=1e-12  Score=120.80  Aligned_cols=115  Identities=20%  Similarity=0.288  Sum_probs=87.4

Q ss_pred             HHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcc
Q 017476          178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF  257 (371)
Q Consensus       178 ~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~  257 (371)
                      .++..+++.+    ...++.+|||+|||+|.++..+++..+++++|+++|+++++++.|++|++.+++. +++++++|..
T Consensus        63 ~~~~~~~~~l----~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~-~v~~~~gd~~  137 (212)
T PRK13942         63 HMVAIMCELL----DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD-NVEVIVGDGT  137 (212)
T ss_pred             HHHHHHHHHc----CCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcc
Confidence            3444455444    2335679999999999999999987655679999999999999999999999875 4999999987


Q ss_pred             cccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC
Q 017476          258 GKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN  330 (371)
Q Consensus       258 ~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~  330 (371)
                      +.... .+.||+|+++--      .        .                  .+.+...+.|||||++++..+
T Consensus       138 ~~~~~-~~~fD~I~~~~~------~--------~------------------~~~~~l~~~LkpgG~lvi~~~  177 (212)
T PRK13942        138 LGYEE-NAPYDRIYVTAA------G--------P------------------DIPKPLIEQLKDGGIMVIPVG  177 (212)
T ss_pred             cCCCc-CCCcCEEEECCC------c--------c------------------cchHHHHHhhCCCcEEEEEEc
Confidence            65433 368999998410      0        0                  122234468999999999884

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.46  E-value=1.1e-12  Score=118.95  Aligned_cols=103  Identities=16%  Similarity=0.140  Sum_probs=81.0

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      .+.+|||+|||+|.+++.+++.   +.+|+|+|+|+.+++.+++++...++.  +++..+|.... . ..++||+|+++.
T Consensus        30 ~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~-~-~~~~fD~I~~~~  102 (195)
T TIGR00477        30 APCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAA-A-LNEDYDFIFSTV  102 (195)
T ss_pred             CCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhc-c-ccCCCCEEEEec
Confidence            4579999999999999999984   479999999999999999999888874  77888887432 1 235799999987


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE  328 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle  328 (371)
                      ++....                        .+....+++.+.++|+|||++++.
T Consensus       103 ~~~~~~------------------------~~~~~~~l~~~~~~LkpgG~lli~  132 (195)
T TIGR00477       103 VFMFLQ------------------------AGRVPEIIANMQAHTRPGGYNLIV  132 (195)
T ss_pred             ccccCC------------------------HHHHHHHHHHHHHHhCCCcEEEEE
Confidence            763211                        123447889999999999985554

Part of a tellurite-reducing operon tehA and tehB

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.45  E-value=2.5e-13  Score=124.82  Aligned_cols=106  Identities=26%  Similarity=0.378  Sum_probs=88.5

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      ..+.+|||+|||-|.++..+|+.   +++|+|+|++++++++|+..+...++.  +.+.+....+... ..++||+|+| 
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~-~~~~FDvV~c-  130 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLAS-AGGQFDVVTC-  130 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHh-cCCCccEEEE-
Confidence            45789999999999999999995   589999999999999999999998875  6777777655333 2379999999 


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG  331 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~  331 (371)
                                   -||..|-|.            ...++..+.+++||||.+++.+.+
T Consensus       131 -------------mEVlEHv~d------------p~~~~~~c~~lvkP~G~lf~STin  163 (243)
T COG2227         131 -------------MEVLEHVPD------------PESFLRACAKLVKPGGILFLSTIN  163 (243)
T ss_pred             -------------hhHHHccCC------------HHHHHHHHHHHcCCCcEEEEeccc
Confidence                         467777554            447999999999999999998753

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.45  E-value=1.9e-12  Score=119.28  Aligned_cols=128  Identities=20%  Similarity=0.133  Sum_probs=97.9

Q ss_pred             eEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCC
Q 017476          198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYI  277 (371)
Q Consensus       198 ~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi  277 (371)
                      +|||+|||+|..+..+++.+ ++.+|+|+|+|+++++.|++++...|+.++++++.+|+.+...  .++||+|+++    
T Consensus         2 ~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~--~~~fD~I~~~----   74 (224)
T smart00828        2 RVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF--PDTYDLVFGF----   74 (224)
T ss_pred             eEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC--CCCCCEeehH----
Confidence            79999999999999999986 6789999999999999999999999998899999999865421  3689999983    


Q ss_pred             CCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCc---------------CcHHHHHHHH
Q 017476          278 PSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGE---------------KQCKFLKNYL  342 (371)
Q Consensus       278 ~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~---------------~q~~~v~~~l  342 (371)
                                ++..|-            .....+++.+.+.|+|||++++.....               .....+.+++
T Consensus        75 ----------~~l~~~------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l  132 (224)
T smart00828       75 ----------EVIHHI------------KDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELL  132 (224)
T ss_pred             ----------HHHHhC------------CCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHH
Confidence                      121221            113478899999999999999854211               1134566677


Q ss_pred             hccccCCceeEEEEe
Q 017476          343 ENDSACSFCNVSIVS  357 (371)
Q Consensus       343 ~~~~~~gf~~v~~~~  357 (371)
                      .+   .||..++...
T Consensus       133 ~~---~Gf~~~~~~~  144 (224)
T smart00828      133 AR---NNLRVVEGVD  144 (224)
T ss_pred             HH---CCCeEEEeEE
Confidence            65   7897766543

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.45  E-value=1.1e-12  Score=125.18  Aligned_cols=110  Identities=25%  Similarity=0.332  Sum_probs=83.2

Q ss_pred             cCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeE
Q 017476          190 DNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSG  269 (371)
Q Consensus       190 ~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDl  269 (371)
                      .....++.+|||+|||.|.+++.+|+++  +.+|+|+.+|++..+.|++.+++.|+++++++...|+.+.    .++||.
T Consensus        57 ~~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~----~~~fD~  130 (273)
T PF02353_consen   57 KLGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL----PGKFDR  130 (273)
T ss_dssp             TTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-------S-SE
T ss_pred             HhCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc----CCCCCE
Confidence            3355678899999999999999999986  6899999999999999999999999999999999998652    248999


Q ss_pred             EEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          270 VVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       270 IvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      |||              -++..|-          |-..+..+++.+.++|+|||.+++..
T Consensus       131 IvS--------------i~~~Ehv----------g~~~~~~~f~~~~~~LkpgG~~~lq~  166 (273)
T PF02353_consen  131 IVS--------------IEMFEHV----------GRKNYPAFFRKISRLLKPGGRLVLQT  166 (273)
T ss_dssp             EEE--------------ESEGGGT----------CGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred             EEE--------------Eechhhc----------ChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence            999              1222221          23456789999999999999999865

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.45  E-value=2.6e-12  Score=122.73  Aligned_cols=128  Identities=23%  Similarity=0.282  Sum_probs=91.1

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEcCcccccccC--CCceeEEE
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ-DIIEIRQGSWFGKLKDV--EGKLSGVV  271 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~-~~v~~~~gD~~~~l~~~--~~~fDlIv  271 (371)
                      .+++|||+.|-||.+++.++..  ...+|++||.|..++++|++|++.||++ ++++++++|+++.+...  .++||+||
T Consensus       123 ~gkrvLnlFsYTGgfsv~Aa~g--GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II  200 (286)
T PF10672_consen  123 KGKRVLNLFSYTGGFSVAAAAG--GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLII  200 (286)
T ss_dssp             TTCEEEEET-TTTHHHHHHHHT--TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred             CCCceEEecCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence            3679999999999999998873  4458999999999999999999999986 57999999998866432  46999999


Q ss_pred             EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcC-cHHHHHHHHhc
Q 017476          272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEK-QCKFLKNYLEN  344 (371)
Q Consensus       272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~-q~~~v~~~l~~  344 (371)
                      ++||=.....          +          +-...|..++..+.++|+|||.|++..+... ..+.+.+.+.+
T Consensus       201 lDPPsF~k~~----------~----------~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~  254 (286)
T PF10672_consen  201 LDPPSFAKSK----------F----------DLERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAE  254 (286)
T ss_dssp             E--SSEESST----------C----------EHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHH
T ss_pred             ECCCCCCCCH----------H----------HHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHH
Confidence            9999542211          0          0024688999999999999999988774322 23444555543

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PRK04457 spermidine synthase; Provisional

Probab=99.45  E-value=1.3e-12  Score=123.90  Aligned_cols=149  Identities=17%  Similarity=0.134  Sum_probs=103.7

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      .+++|||+|||+|.++..+++.+ |+.+|++||+++++++.|++++...+..++++++.+|..+.+....++||+|++|.
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~  144 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG  144 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence            45789999999999999999986 88999999999999999999986655556799999999776655456899999973


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcC-cHHHHHHHHhccccCCcee-
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEK-QCKFLKNYLENDSACSFCN-  352 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~-q~~~v~~~l~~~~~~gf~~-  352 (371)
                       |....    ...         .        -....+++.+.+.|+|||++++...+.. ....+.+.+++    -|.. 
T Consensus       145 -~~~~~----~~~---------~--------l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~----~F~~~  198 (262)
T PRK04457        145 -FDGEG----IID---------A--------LCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLES----SFEGR  198 (262)
T ss_pred             -CCCCC----Ccc---------c--------cCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHH----hcCCc
Confidence             21110    000         0        0124788999999999999999763322 22333444442    3753 


Q ss_pred             EEEEecCCCCceEEEEEe
Q 017476          353 VSIVSDFAGIQRFVTGFR  370 (371)
Q Consensus       353 v~~~~Dl~g~~R~~~a~~  370 (371)
                      +-+++...+.-.+++|.+
T Consensus       199 ~~~~~~~~~~N~v~~a~~  216 (262)
T PRK04457        199 VLELPAESHGNVAVFAFK  216 (262)
T ss_pred             EEEEecCCCccEEEEEEC
Confidence            334443333335666654

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.45  E-value=1.9e-12  Score=121.74  Aligned_cols=108  Identities=21%  Similarity=0.197  Sum_probs=85.6

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      ++.+|||+|||+|..+..+++.+ .++++|+|+|+|+.|++.|++|+..++..++++++++|+.+. +.  +.+|+|++|
T Consensus        56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~-~~--~~~D~vv~~  132 (247)
T PRK15451         56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI-AI--ENASMVVLN  132 (247)
T ss_pred             CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhC-CC--CCCCEEehh
Confidence            45699999999999999988743 367899999999999999999999888877899999998653 22  469999997


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      ....      .+.+                  +....+++++.+.|+|||.+++..
T Consensus       133 ~~l~------~l~~------------------~~~~~~l~~i~~~LkpGG~l~l~e  164 (247)
T PRK15451        133 FTLQ------FLEP------------------SERQALLDKIYQGLNPGGALVLSE  164 (247)
T ss_pred             hHHH------hCCH------------------HHHHHHHHHHHHhcCCCCEEEEEE
Confidence            4321      1111                  123478899999999999998843

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.44  E-value=1.8e-12  Score=117.87  Aligned_cols=103  Identities=20%  Similarity=0.220  Sum_probs=81.8

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|..++.+++.   +.+|+|+|+|+.+++.|++++...++.+ +++..+|+.+..  ..++||+|++|-
T Consensus        30 ~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~~--~~~~fD~I~~~~  103 (197)
T PRK11207         30 KPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLDN-LHTAVVDLNNLT--FDGEYDFILSTV  103 (197)
T ss_pred             CCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCCc-ceEEecChhhCC--cCCCcCEEEEec
Confidence            4579999999999999999984   5799999999999999999999888854 899999986532  236799999964


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEE
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF  327 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvl  327 (371)
                      .+.      .++                  .+....+++.+.++|+|||.+++
T Consensus       104 ~~~------~~~------------------~~~~~~~l~~i~~~LkpgG~~~~  132 (197)
T PRK11207        104 VLM------FLE------------------AKTIPGLIANMQRCTKPGGYNLI  132 (197)
T ss_pred             chh------hCC------------------HHHHHHHHHHHHHHcCCCcEEEE
Confidence            321      011                  12345788999999999999655

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=99.44  E-value=2.4e-12  Score=124.74  Aligned_cols=162  Identities=23%  Similarity=0.347  Sum_probs=100.9

Q ss_pred             cccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHh------CCCcEEEEEeCCHHHHHHHHHHHHH
Q 017476          169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVL------GSKGSIIAVDLNPLAAAVAAFNAQR  242 (371)
Q Consensus       169 vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~------~~~~~V~gvDis~~al~~A~~n~~~  242 (371)
                      .+.|+..+.++++.+.        ...+.+|+|.+||+|.+.+++.+.+      ....+++|+|+++.++.+|+.|+..
T Consensus        28 ~~TP~~i~~l~~~~~~--------~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l   99 (311)
T PF02384_consen   28 FYTPREIVDLMVKLLN--------PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLL   99 (311)
T ss_dssp             C---HHHHHHHHHHHT--------T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHH
T ss_pred             eehHHHHHHHHHhhhh--------ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhh
Confidence            3568777777766651        2235589999999999999988742      2567999999999999999999988


Q ss_pred             cCCCCc-EEEEEcCcccccccC-CCceeEEEEcCCCCCCCCcc-cchhhhcccCccccccCCCCcHHHHHHHHHHHhccc
Q 017476          243 YGLQDI-IEIRQGSWFGKLKDV-EGKLSGVVSNPPYIPSDDIS-GLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASML  319 (371)
Q Consensus       243 ~gl~~~-v~~~~gD~~~~l~~~-~~~fDlIvsNPPYi~~~~~~-~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~L  319 (371)
                      ++.... ..+..+|.+...... .++||+|++||||....-.. ..... .+|...   .......+.  .++..+.+.|
T Consensus       100 ~~~~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~--~Fi~~~l~~L  173 (311)
T PF02384_consen  100 HGIDNSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKD-ERFKKY---FPPKSNAEY--AFIEHALSLL  173 (311)
T ss_dssp             TTHHCBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTT-CCCTTC---SSSTTEHHH--HHHHHHHHTE
T ss_pred             hccccccccccccccccccccccccccccccCCCCcccccccccccccc-cccccc---CCCccchhh--hhHHHHHhhc
Confidence            876443 468999987653332 46899999999998652111 11111 112111   112222333  3788888999


Q ss_pred             ccCcEEEEEECC-----cCcHHHHHHHHhc
Q 017476          320 KPGGFFAFETNG-----EKQCKFLKNYLEN  344 (371)
Q Consensus       320 kpgG~lvle~~~-----~~q~~~v~~~l~~  344 (371)
                      ++||.+++.++.     ......+++.|.+
T Consensus       174 k~~G~~~~Ilp~~~L~~~~~~~~iR~~ll~  203 (311)
T PF02384_consen  174 KPGGRAAIILPNGFLFSSSSEKKIRKYLLE  203 (311)
T ss_dssp             EEEEEEEEEEEHHHHHGSTHHHHHHHHHHH
T ss_pred             ccccceeEEecchhhhccchHHHHHHHHHh
Confidence            999998887742     1234677777664

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.43  E-value=1.1e-12  Score=123.71  Aligned_cols=99  Identities=26%  Similarity=0.201  Sum_probs=79.4

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      .++.+|||+|||+|.++..+++.+ ++.+|+|+|+|+.+++.|+++        +++++++|+.+..  ..++||+|++|
T Consensus        28 ~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~--~~~~fD~v~~~   96 (255)
T PRK14103         28 ERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWK--PKPDTDVVVSN   96 (255)
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCC--CCCCceEEEEe
Confidence            356799999999999999999985 778999999999999999763        3789999986542  24689999998


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      ..+....                          ....+++++.+.|||||.+++.+
T Consensus        97 ~~l~~~~--------------------------d~~~~l~~~~~~LkpgG~l~~~~  126 (255)
T PRK14103         97 AALQWVP--------------------------EHADLLVRWVDELAPGSWIAVQV  126 (255)
T ss_pred             hhhhhCC--------------------------CHHHHHHHHHHhCCCCcEEEEEc
Confidence            6543211                          12367888899999999999975

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.43  E-value=3.4e-12  Score=126.06  Aligned_cols=142  Identities=16%  Similarity=0.234  Sum_probs=107.3

Q ss_pred             eeeEeeCCcccc--cchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476          161 LVLSVEEGVFIP--RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       161 ~~~~v~~~vliP--rp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~  238 (371)
                      +.+.++++.|..  ...++.+++.+.+++ .   . .+.+|||+|||+|.+++.+++..   .+|+|||+++++++.|++
T Consensus       166 ~~~~~~~~~F~Q~N~~~~~~l~~~v~~~~-~---~-~~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~  237 (353)
T TIGR02143       166 FIYRQVENSFTQPNAAVNIKMLEWACEVT-Q---G-SKGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQY  237 (353)
T ss_pred             EEEEECCCCcccCCHHHHHHHHHHHHHHh-h---c-CCCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHH
Confidence            678888998883  345688888888876 2   1 12379999999999999999864   489999999999999999


Q ss_pred             HHHHcCCCCcEEEEEcCcccccccC---------C------CceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCC
Q 017476          239 NAQRYGLQDIIEIRQGSWFGKLKDV---------E------GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVD  303 (371)
Q Consensus       239 n~~~~gl~~~v~~~~gD~~~~l~~~---------~------~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~d  303 (371)
                      |++.+++.+ ++++.+|+.+.+...         .      .+||+|+.|||...      +..                
T Consensus       238 n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G------~~~----------------  294 (353)
T TIGR02143       238 NIAANNIDN-VQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAG------LDP----------------  294 (353)
T ss_pred             HHHHcCCCc-EEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCCCC------CcH----------------
Confidence            999999865 999999987654321         1      13899999999521      111                


Q ss_pred             cHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHH
Q 017476          304 GLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYL  342 (371)
Q Consensus       304 Gl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l  342 (371)
                            .+++.+.   ++++++|++++...++..+..+.
T Consensus       295 ------~~l~~l~---~~~~ivYvsC~p~tlaRDl~~L~  324 (353)
T TIGR02143       295 ------DTCKLVQ---AYERILYISCNPETLKANLEQLS  324 (353)
T ss_pred             ------HHHHHHH---cCCcEEEEEcCHHHHHHHHHHHh
Confidence                  2333322   36899999998777777777665

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PLN02476 O-methyltransferase

Probab=99.42  E-value=2.3e-12  Score=122.57  Aligned_cols=121  Identities=14%  Similarity=0.256  Sum_probs=100.3

Q ss_pred             cchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q 017476          173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIR  252 (371)
Q Consensus       173 rp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~  252 (371)
                      .+++..+...+....       ++++|||+|||+|..++.+|..++++++|+++|.++++.+.|++|+++.|+.++++++
T Consensus       103 ~~~~g~lL~~L~~~~-------~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li  175 (278)
T PLN02476        103 SPDQAQLLAMLVQIL-------GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVK  175 (278)
T ss_pred             CHHHHHHHHHHHHhc-------CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE
Confidence            466666777666554       4679999999999999999998766789999999999999999999999999999999


Q ss_pred             EcCcccccccC-----CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEE
Q 017476          253 QGSWFGKLKDV-----EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF  327 (371)
Q Consensus       253 ~gD~~~~l~~~-----~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvl  327 (371)
                      .||..+.++..     .++||+|+.+.+                             -..|..+++.+.++|++||.+++
T Consensus       176 ~GdA~e~L~~l~~~~~~~~FD~VFIDa~-----------------------------K~~Y~~y~e~~l~lL~~GGvIV~  226 (278)
T PLN02476        176 HGLAAESLKSMIQNGEGSSYDFAFVDAD-----------------------------KRMYQDYFELLLQLVRVGGVIVM  226 (278)
T ss_pred             EcCHHHHHHHHHhcccCCCCCEEEECCC-----------------------------HHHHHHHHHHHHHhcCCCcEEEE
Confidence            99998766432     358999998533                             13466788888899999999998


Q ss_pred             EE
Q 017476          328 ET  329 (371)
Q Consensus       328 e~  329 (371)
                      ..
T Consensus       227 DN  228 (278)
T PLN02476        227 DN  228 (278)
T ss_pred             ec
Confidence            53

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.41  E-value=6.7e-12  Score=122.53  Aligned_cols=131  Identities=24%  Similarity=0.249  Sum_probs=93.5

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      ..+++|||+|||+|.++..++.. ++ ..|+|+|.|+.++..++......+...++.++.+|+.+ ++. .++||+|+|+
T Consensus       121 l~g~~VLDIGCG~G~~~~~la~~-g~-~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~-lp~-~~~FD~V~s~  196 (322)
T PRK15068        121 LKGRTVLDVGCGNGYHMWRMLGA-GA-KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQ-LPA-LKAFDTVFSM  196 (322)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHc-CC-CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHH-CCC-cCCcCEEEEC
Confidence            45679999999999999999986 23 47999999999987655443333334469999999854 333 5789999993


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC---Cc------------------
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN---GE------------------  332 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~---~~------------------  332 (371)
                                    .+..|.            .....+++.+.+.|+|||.++++..   +.                  
T Consensus       197 --------------~vl~H~------------~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~  250 (322)
T PRK15068        197 --------------GVLYHR------------RSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVY  250 (322)
T ss_pred             --------------Chhhcc------------CCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccce
Confidence                          122221            1234688899999999999998741   10                  


Q ss_pred             --CcHHHHHHHHhccccCCceeEEEEe
Q 017476          333 --KQCKFLKNYLENDSACSFCNVSIVS  357 (371)
Q Consensus       333 --~q~~~v~~~l~~~~~~gf~~v~~~~  357 (371)
                        ...+.+.+++++   .||..+++..
T Consensus       251 ~lps~~~l~~~L~~---aGF~~i~~~~  274 (322)
T PRK15068        251 FIPSVPALKNWLER---AGFKDVRIVD  274 (322)
T ss_pred             eCCCHHHHHHHHHH---cCCceEEEEe
Confidence              023456777775   7899887763

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.41  E-value=3.9e-12  Score=125.93  Aligned_cols=128  Identities=16%  Similarity=0.193  Sum_probs=101.9

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc-cCCCceeEEEEc
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-DVEGKLSGVVSN  273 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~-~~~~~fDlIvsN  273 (371)
                      .+..+||+|||+|.+++.+|+.. |+..++|+|+++.+++.|.+++..+++.+ +.++++|+...+. ...+.+|.|++|
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~N-V~~i~~DA~~ll~~~~~~s~D~I~ln  199 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKN-LLIINYDARLLLELLPSNSVEKIFVH  199 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHhhhhCCCCceeEEEEe
Confidence            35589999999999999999985 88999999999999999999999999876 9999999854221 124789999999


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhc
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLEN  344 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~  344 (371)
                      .|..+...         +| -++          ....+++.+.+.|+|||.+.+-+......+.+.+.+.+
T Consensus       200 FPdPW~Kk---------rH-RRl----------v~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~  250 (390)
T PRK14121        200 FPVPWDKK---------PH-RRV----------ISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLK  250 (390)
T ss_pred             CCCCcccc---------ch-hhc----------cHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHh
Confidence            87543222         12 011          13478999999999999999999766667777777665

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.41  E-value=7e-13  Score=131.43  Aligned_cols=117  Identities=21%  Similarity=0.222  Sum_probs=97.6

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEcCcccccccC---CCceeEE
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ-DIIEIRQGSWFGKLKDV---EGKLSGV  270 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~-~~v~~~~gD~~~~l~~~---~~~fDlI  270 (371)
                      .+++|||++|-||.+++.+|..  ...+|++||+|..++++|++|++.||++ +++.|+++|.++.+...   ..+||+|
T Consensus       217 ~GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI  294 (393)
T COG1092         217 AGKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLI  294 (393)
T ss_pred             cCCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEE
Confidence            4789999999999999999984  3449999999999999999999999985 56899999999987654   3489999


Q ss_pred             EEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC
Q 017476          271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN  330 (371)
Q Consensus       271 vsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~  330 (371)
                      |.+||=...+....                 .++..+|..++..+.+.|+|||.+++..+
T Consensus       295 ilDPPsF~r~k~~~-----------------~~~~rdy~~l~~~~~~iL~pgG~l~~~s~  337 (393)
T COG1092         295 ILDPPSFARSKKQE-----------------FSAQRDYKDLNDLALRLLAPGGTLVTSSC  337 (393)
T ss_pred             EECCcccccCcccc-----------------hhHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence            99999553322110                 23467889999999999999999999874

>PRK04266 fibrillarin; Provisional

Probab=99.40  E-value=1.3e-11  Score=114.65  Aligned_cols=143  Identities=16%  Similarity=0.122  Sum_probs=97.9

Q ss_pred             CCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc--ccCCCceeEE
Q 017476          193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL--KDVEGKLSGV  270 (371)
Q Consensus       193 ~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l--~~~~~~fDlI  270 (371)
                      ..++.+|||+|||+|.++..+++.. +.++|+|+|+++.+++.+.++++..   .++.++.+|..++.  ....++||+|
T Consensus        70 i~~g~~VlD~G~G~G~~~~~la~~v-~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~~~~D~i  145 (226)
T PRK04266         70 IKKGSKVLYLGAASGTTVSHVSDIV-EEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHVVEKVDVI  145 (226)
T ss_pred             CCCCCEEEEEccCCCHHHHHHHHhc-CCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhccccCCEE
Confidence            3456799999999999999999986 4679999999999999888887654   34899999986531  1123579999


Q ss_pred             EEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC----Cc-----CcHHHHHHH
Q 017476          271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN----GE-----KQCKFLKNY  341 (371)
Q Consensus       271 vsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~----~~-----~q~~~v~~~  341 (371)
                      +++-+.                 |           +....+++.+.+.|||||.+++.+.    ..     ...+...+.
T Consensus       146 ~~d~~~-----------------p-----------~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~  197 (226)
T PRK04266        146 YQDVAQ-----------------P-----------NQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRK  197 (226)
T ss_pred             EECCCC-----------------h-----------hHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHH
Confidence            985221                 0           1123567889999999999999421    01     111224466


Q ss_pred             HhccccCCceeEEEEec--CCCCceEEEEEe
Q 017476          342 LENDSACSFCNVSIVSD--FAGIQRFVTGFR  370 (371)
Q Consensus       342 l~~~~~~gf~~v~~~~D--l~g~~R~~~a~~  370 (371)
                      +++   .||+.++...-  +....-.+++++
T Consensus       198 l~~---aGF~~i~~~~l~p~~~~h~~~v~~~  225 (226)
T PRK04266        198 LEE---GGFEILEVVDLEPYHKDHAAVVARK  225 (226)
T ss_pred             HHH---cCCeEEEEEcCCCCcCCeEEEEEEc
Confidence            664   78987766542  223355555554

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.40  E-value=2e-11  Score=111.68  Aligned_cols=142  Identities=20%  Similarity=0.201  Sum_probs=107.4

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSK-GSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~-~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      ++.+|||+|||+|.++..+++.. +. .+++++|+++.+++.++++..   ...+++++.+|+.+.. ...++||+|+++
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~-~~~~~~D~i~~~  113 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSA-PDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALP-FEDNSFDAVTIA  113 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhc-CCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCC-CCCCcEEEEEEe
Confidence            56799999999999999999986 43 699999999999999999875   3346899999987643 224689999984


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC-Cc--------------------
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN-GE--------------------  332 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~-~~--------------------  332 (371)
                      --+              .+            +.....+++.+.+.|+|||++++... ..                    
T Consensus       114 ~~~--------------~~------------~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (223)
T TIGR01934       114 FGL--------------RN------------VTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSI  167 (223)
T ss_pred             eee--------------CC------------cccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhh
Confidence            111              11            12244788999999999999986321 00                    


Q ss_pred             ---------------------CcHHHHHHHHhccccCCceeEEEEecCCCCceEEEEEe
Q 017476          333 ---------------------KQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFR  370 (371)
Q Consensus       333 ---------------------~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~~  370 (371)
                                           ...+.+.+++++   .||..+++.+...|...+++|++
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---aGf~~~~~~~~~~~~~~~~~~~~  223 (223)
T TIGR01934       168 GGLISKNAEAYTYLPESIRAFPSQEELAAMLKE---AGFEEVRYRSLTFGVAAIHVGKK  223 (223)
T ss_pred             hhhhcCCchhhHHHHHHHHhCCCHHHHHHHHHH---cCCccceeeeeecceeeEEEecC
Confidence                                 022446667765   78999999999999999999875

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.40  E-value=9.2e-13  Score=106.50  Aligned_cols=99  Identities=28%  Similarity=0.400  Sum_probs=74.3

Q ss_pred             EEEECCcccHHHHHHHHHh--CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCC
Q 017476          199 WVDLGTGSGAIAIGIARVL--GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPY  276 (371)
Q Consensus       199 VLDlG~GsG~~al~la~~~--~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPY  276 (371)
                      |||+|||+|..+..+++.+  ++..+++|+|+|+++++.|+++....+.  +++++++|+.+ +....++||+|+++   
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~-l~~~~~~~D~v~~~---   74 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARD-LPFSDGKFDLVVCS---   74 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTC-HHHHSSSEEEEEE----
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhH-CcccCCCeeEEEEc---
Confidence            7999999999999999876  2347999999999999999999988766  49999999966 44446799999992   


Q ss_pred             CCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCc
Q 017476          277 IPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGG  323 (371)
Q Consensus       277 i~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG  323 (371)
                        ...+.+++                  -+....+++.+.++|+|||
T Consensus        75 --~~~~~~~~------------------~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   75 --GLSLHHLS------------------PEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             --TTGGGGSS------------------HHHHHHHHHHHHHTEEEEE
T ss_pred             --CCccCCCC------------------HHHHHHHHHHHHHHhCCCC
Confidence              01111111                  2345689999999999998

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.40  E-value=8.7e-12  Score=120.72  Aligned_cols=105  Identities=15%  Similarity=0.154  Sum_probs=83.8

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEE-
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS-  272 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvs-  272 (371)
                      .+..+|||+|||+|.+++.+++.+ |+.+++++|+ +.+++.|++|+...++.++++++.+|+++...   ..+|+|++ 
T Consensus       148 ~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~---~~~D~v~~~  222 (306)
T TIGR02716       148 DGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY---PEADAVLFC  222 (306)
T ss_pred             CCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC---CCCCEEEeE
Confidence            345799999999999999999986 8899999998 78999999999999999899999999986321   24698765 


Q ss_pred             cCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476          273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE  328 (371)
Q Consensus       273 NPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle  328 (371)
                      |-.       +       .+           +-+....+++++.+.|+|||++++.
T Consensus       223 ~~l-------h-------~~-----------~~~~~~~il~~~~~~L~pgG~l~i~  253 (306)
T TIGR02716       223 RIL-------Y-------SA-----------NEQLSTIMCKKAFDAMRSGGRLLIL  253 (306)
T ss_pred             hhh-------h-------cC-----------ChHHHHHHHHHHHHhcCCCCEEEEE
Confidence            211       0       01           1133457899999999999999775

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.40  E-value=6.2e-12  Score=110.59  Aligned_cols=158  Identities=24%  Similarity=0.299  Sum_probs=106.5

Q ss_pred             hHHHHHHHHHHHhhhcCCCC-CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 017476          175 ETELMVDLVSDVLVRDNDGL-RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ  253 (371)
Q Consensus       175 ~te~lv~~~~~~~~~~~~~~-~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~  253 (371)
                      ..+.+++++.+.+. ..... ...+|||||||.|.+...|+++ +-....+|||.|+.|+++|+.-+++.++++.|+|.+
T Consensus        47 ae~riv~wl~d~~~-~~rv~~~A~~VlDLGtGNG~~L~~L~~e-gf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q  124 (227)
T KOG1271|consen   47 AEERIVDWLKDLIV-ISRVSKQADRVLDLGTGNGHLLFQLAKE-GFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQ  124 (227)
T ss_pred             HHHHHHHHHHhhhh-hhhhcccccceeeccCCchHHHHHHHHh-cCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEE
Confidence            44667788777662 11111 2339999999999999999997 345569999999999999999999999999999999


Q ss_pred             cCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcC
Q 017476          254 GSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEK  333 (371)
Q Consensus       254 gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~  333 (371)
                      .|+.++ ....++||+|.----|    +.-.|.++-..           ..+..|   +....+.|+|||++++...++ 
T Consensus       125 ~DI~~~-~~~~~qfdlvlDKGT~----DAisLs~d~~~-----------~r~~~Y---~d~v~~ll~~~gifvItSCN~-  184 (227)
T KOG1271|consen  125 LDITDP-DFLSGQFDLVLDKGTL----DAISLSPDGPV-----------GRLVVY---LDSVEKLLSPGGIFVITSCNF-  184 (227)
T ss_pred             eeccCC-cccccceeEEeecCce----eeeecCCCCcc-----------cceeee---hhhHhhccCCCcEEEEEecCc-
Confidence            999986 3335789988741111    00011111101           112233   334457899999999988444 


Q ss_pred             cHHHHHHHHhccccCCceeEEEEe
Q 017476          334 QCKFLKNYLENDSACSFCNVSIVS  357 (371)
Q Consensus       334 q~~~v~~~l~~~~~~gf~~v~~~~  357 (371)
                      ..+++.+.+.+   .+|.-...++
T Consensus       185 T~dELv~~f~~---~~f~~~~tvp  205 (227)
T KOG1271|consen  185 TKDELVEEFEN---FNFEYLSTVP  205 (227)
T ss_pred             cHHHHHHHHhc---CCeEEEEeec
Confidence            55666776764   5676555544

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.39  E-value=1.5e-12  Score=102.46  Aligned_cols=95  Identities=24%  Similarity=0.289  Sum_probs=73.5

Q ss_pred             EEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCC
Q 017476          200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPS  279 (371)
Q Consensus       200 LDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~  279 (371)
                      ||+|||+|..+..+++.  +..+|+|+|+++++++.++++....    ++.++++|..+. +..++.||+|+++      
T Consensus         1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l-~~~~~sfD~v~~~------   67 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDL-PFPDNSFDVVFSN------   67 (95)
T ss_dssp             EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSS-SS-TT-EEEEEEE------
T ss_pred             CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhC-ccccccccccccc------
Confidence            89999999999999996  6789999999999999999987543    366999998654 5446899999994      


Q ss_pred             CCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEE
Q 017476          280 DDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF  327 (371)
Q Consensus       280 ~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvl  327 (371)
                              .+..|            ++....+++++.+.|||||++++
T Consensus        68 --------~~~~~------------~~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   68 --------SVLHH------------LEDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             --------SHGGG------------SSHHHHHHHHHHHHEEEEEEEEE
T ss_pred             --------cceee------------ccCHHHHHHHHHHHcCcCeEEeC
Confidence                    11122            13455899999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.39  E-value=4.4e-12  Score=119.54  Aligned_cols=102  Identities=21%  Similarity=0.184  Sum_probs=81.6

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      .++.+|||+|||+|.++..+++.+ ++.+|+|+|+|+.+++.|+++.      .++.++.+|..+...  .++||+|++|
T Consensus        30 ~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~--~~~fD~v~~~  100 (258)
T PRK01683         30 ENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQP--PQALDLIFAN  100 (258)
T ss_pred             cCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCC--CCCccEEEEc
Confidence            346799999999999999999885 7789999999999999999874      248899999865432  3589999998


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN  330 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~  330 (371)
                      ..+....                          ....+++.+.+.|+|||.+++.+.
T Consensus       101 ~~l~~~~--------------------------d~~~~l~~~~~~LkpgG~~~~~~~  131 (258)
T PRK01683        101 ASLQWLP--------------------------DHLELFPRLVSLLAPGGVLAVQMP  131 (258)
T ss_pred             cChhhCC--------------------------CHHHHHHHHHHhcCCCcEEEEECC
Confidence            6542211                          123678888999999999999763

>TIGR00452 methyltransferase, putative

Probab=99.39  E-value=1.5e-11  Score=119.37  Aligned_cols=133  Identities=22%  Similarity=0.171  Sum_probs=92.6

Q ss_pred             CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEE
Q 017476          192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV  271 (371)
Q Consensus       192 ~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIv  271 (371)
                      ...++++|||+|||+|.++..++.. + ...|+|+|.|+.++..++...+..+...++.+..+++.+ ++. ...||+|+
T Consensus       118 ~~~~g~~VLDvGCG~G~~~~~~~~~-g-~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~-lp~-~~~FD~V~  193 (314)
T TIGR00452       118 SPLKGRTILDVGCGSGYHMWRMLGH-G-AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQ-LHE-LYAFDTVF  193 (314)
T ss_pred             CCCCCCEEEEeccCCcHHHHHHHHc-C-CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHH-CCC-CCCcCEEE
Confidence            3456789999999999999998875 2 347999999999988765433333333468888888744 332 25899999


Q ss_pred             EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC---CcC---------------
Q 017476          272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN---GEK---------------  333 (371)
Q Consensus       272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~---~~~---------------  333 (371)
                      |+              .+..|-+            ....+++++++.|+|||.++++..   +..               
T Consensus       194 s~--------------gvL~H~~------------dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~n  247 (314)
T TIGR00452       194 SM--------------GVLYHRK------------SPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKN  247 (314)
T ss_pred             Ec--------------chhhccC------------CHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccc
Confidence            94              2222321            133678889999999999998741   100               


Q ss_pred             -----cHHHHHHHHhccccCCceeEEEEe
Q 017476          334 -----QCKFLKNYLENDSACSFCNVSIVS  357 (371)
Q Consensus       334 -----q~~~v~~~l~~~~~~gf~~v~~~~  357 (371)
                           ....+..++++   .||..|++..
T Consensus       248 v~flpS~~~L~~~L~~---aGF~~V~i~~  273 (314)
T TIGR00452       248 VYFIPSVSALKNWLEK---VGFENFRILD  273 (314)
T ss_pred             cccCCCHHHHHHHHHH---CCCeEEEEEe
Confidence                 23456677775   7899998764

Known examples to date are restricted to the proteobacteria.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.39  E-value=2e-11  Score=115.84  Aligned_cols=106  Identities=18%  Similarity=0.196  Sum_probs=81.3

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      .++.+|||+|||+|..+..+++.+  +.+|+|+|+|+.+++.|+++...   .+++.+..+|+.+. +...++||+|+++
T Consensus        51 ~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~-~~~~~~FD~V~s~  124 (263)
T PTZ00098         51 NENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKK-DFPENTFDMIYSR  124 (263)
T ss_pred             CCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccC-CCCCCCeEEEEEh
Confidence            356799999999999999998763  57999999999999999988653   34699999998652 2224789999994


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      .-.              .|.+          .+....+++.+.++|||||++++..
T Consensus       125 ~~l--------------~h~~----------~~d~~~~l~~i~r~LkPGG~lvi~d  156 (263)
T PTZ00098        125 DAI--------------LHLS----------YADKKKLFEKCYKWLKPNGILLITD  156 (263)
T ss_pred             hhH--------------HhCC----------HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            221              1111          1234478899999999999999864

>PRK08317 hypothetical protein; Provisional

Probab=99.38  E-value=3.3e-11  Score=110.94  Aligned_cols=123  Identities=24%  Similarity=0.288  Sum_probs=90.1

Q ss_pred             chHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 017476          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ  253 (371)
Q Consensus       174 p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~  253 (371)
                      |..+.+.+.+.+.+    ...++.+|||+|||+|.++..+++.+++..+++|+|+++.+++.|+++..  ....++++..
T Consensus         2 ~~~~~~~~~~~~~~----~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~   75 (241)
T PRK08317          2 PDFRRYRARTFELL----AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVR   75 (241)
T ss_pred             chHHHHHHHHHHHc----CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEe
Confidence            34455666666555    33456799999999999999999976567899999999999999999833  2334699999


Q ss_pred             cCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          254 GSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       254 gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      +|..+. +...++||+|+++--+              .|-            .....+++.+.+.|+|||.++++.
T Consensus        76 ~d~~~~-~~~~~~~D~v~~~~~~--------------~~~------------~~~~~~l~~~~~~L~~gG~l~~~~  124 (241)
T PRK08317         76 GDADGL-PFPDGSFDAVRSDRVL--------------QHL------------EDPARALAEIARVLRPGGRVVVLD  124 (241)
T ss_pred             cccccC-CCCCCCceEEEEechh--------------hcc------------CCHHHHHHHHHHHhcCCcEEEEEe
Confidence            998642 2224789999985221              111            113367888899999999998865

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.38  E-value=8.2e-12  Score=117.32  Aligned_cols=111  Identities=20%  Similarity=0.118  Sum_probs=82.9

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      .+.+|||+|||+|.++..+++.   +.+|+|+|+|+.+++.|+++..      ...++++|+.+ ++..+++||+|++|.
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~-~~~~~~~fD~V~s~~  111 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA------ADHYLAGDIES-LPLATATFDLAWSNL  111 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC------CCCEEEcCccc-CcCCCCcEEEEEECc
Confidence            4568999999999999888763   5799999999999999988742      24678899855 333346899999986


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHH
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNY  341 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~  341 (371)
                      ++....                          ....++.++.+.|+|||.+++...+.....++.+.
T Consensus       112 ~l~~~~--------------------------d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~  152 (251)
T PRK10258        112 AVQWCG--------------------------NLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQA  152 (251)
T ss_pred             hhhhcC--------------------------CHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHH
Confidence            543211                          13367888999999999999987554444444433

>TIGR00740 methyltransferase, putative

Probab=99.37  E-value=1.4e-11  Score=114.98  Aligned_cols=108  Identities=19%  Similarity=0.127  Sum_probs=84.7

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      ++.+|||+|||+|..+..+++.+ .++.+++|+|+|+.+++.|++++...+...+++++++|+.+.. .  ..+|+|+++
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~-~--~~~d~v~~~  129 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE-I--KNASMVILN  129 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-C--CCCCEEeee
Confidence            45689999999999999999864 2678999999999999999999988776667999999997532 2  368999885


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      -..      +.+.                  .+....+++.+.+.|+|||.+++..
T Consensus       130 ~~l------~~~~------------------~~~~~~~l~~i~~~LkpgG~l~i~d  161 (239)
T TIGR00740       130 FTL------QFLP------------------PEDRIALLTKIYEGLNPNGVLVLSE  161 (239)
T ss_pred             cch------hhCC------------------HHHHHHHHHHHHHhcCCCeEEEEee
Confidence            321      1111                  1223478899999999999999864

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.37  E-value=2.5e-12  Score=117.56  Aligned_cols=120  Identities=26%  Similarity=0.437  Sum_probs=95.7

Q ss_pred             chHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 017476          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ  253 (371)
Q Consensus       174 p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~  253 (371)
                      +++..++..+....       ++++|||+||++|.-++.+|+.++++++|+.+|++++..+.|++|+++.|+.++|+++.
T Consensus        31 ~~~g~lL~~l~~~~-------~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~  103 (205)
T PF01596_consen   31 PETGQLLQMLVRLT-------RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIE  103 (205)
T ss_dssp             HHHHHHHHHHHHHH-------T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEE
T ss_pred             HHHHHHHHHHHHhc-------CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEE
Confidence            45556666666554       46799999999999999999988668999999999999999999999999999999999


Q ss_pred             cCcccccccC-----CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476          254 GSWFGKLKDV-----EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE  328 (371)
Q Consensus       254 gD~~~~l~~~-----~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle  328 (371)
                      ||+.+.++.+     .++||+|+.+-                  .           -..|...++.+.++|++||.+++.
T Consensus       104 gda~~~l~~l~~~~~~~~fD~VFiDa------------------~-----------K~~y~~y~~~~~~ll~~ggvii~D  154 (205)
T PF01596_consen  104 GDALEVLPELANDGEEGQFDFVFIDA------------------D-----------KRNYLEYFEKALPLLRPGGVIIAD  154 (205)
T ss_dssp             S-HHHHHHHHHHTTTTTSEEEEEEES------------------T-----------GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eccHhhHHHHHhccCCCceeEEEEcc------------------c-----------ccchhhHHHHHhhhccCCeEEEEc
Confidence            9998765432     25899999831                  0           123456677777899999999996


Q ss_pred             E
Q 017476          329 T  329 (371)
Q Consensus       329 ~  329 (371)
                      -
T Consensus       155 N  155 (205)
T PF01596_consen  155 N  155 (205)
T ss_dssp             T
T ss_pred             c
Confidence            4

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PLN03075 nicotianamine synthase; Provisional

Probab=99.37  E-value=2e-11  Score=116.82  Aligned_cols=145  Identities=13%  Similarity=0.141  Sum_probs=100.8

Q ss_pred             CCCeEEEECCcccHH-HHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH-cCCCCcEEEEEcCcccccccCCCceeEEEE
Q 017476          195 RDGFWVDLGTGSGAI-AIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR-YGLQDIIEIRQGSWFGKLKDVEGKLSGVVS  272 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~-al~la~~~~~~~~V~gvDis~~al~~A~~n~~~-~gl~~~v~~~~gD~~~~l~~~~~~fDlIvs  272 (371)
                      .+++|+|+|||.|.+ ++.++....++++++|+|+|+++++.|++++.. .++.++++|..+|+.+.... .++||+|++
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~-l~~FDlVF~  201 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTES-LKEYDVVFL  201 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccc-cCCcCEEEE
Confidence            578999999997743 444443334889999999999999999999965 78888999999999875332 368999999


Q ss_pred             cCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhc----cccC
Q 017476          273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLEN----DSAC  348 (371)
Q Consensus       273 NPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~----~~~~  348 (371)
                      + --+      ++..                  .....+++.+.+.|+|||.+++-. +..    .+++|--    ..-.
T Consensus       202 ~-ALi------~~dk------------------~~k~~vL~~l~~~LkPGG~Lvlr~-~~G----~r~~LYp~v~~~~~~  251 (296)
T PLN03075        202 A-ALV------GMDK------------------EEKVKVIEHLGKHMAPGALLMLRS-AHG----ARAFLYPVVDPCDLR  251 (296)
T ss_pred             e-ccc------cccc------------------ccHHHHHHHHHHhcCCCcEEEEec-ccc----hHhhcCCCCChhhCC
Confidence            4 111      0000                  234578899999999999999987 222    2222211    1124


Q ss_pred             CceeEEEEecCCC-CceEEEEEe
Q 017476          349 SFCNVSIVSDFAG-IQRFVTGFR  370 (371)
Q Consensus       349 gf~~v~~~~Dl~g-~~R~~~a~~  370 (371)
                      ||+...++..... +--+++++|
T Consensus       252 gf~~~~~~~P~~~v~Nsvi~~r~  274 (296)
T PLN03075        252 GFEVLSVFHPTDEVINSVIIARK  274 (296)
T ss_pred             CeEEEEEECCCCCceeeEEEEEe
Confidence            7877666554444 445666666

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=99.37  E-value=1.2e-11  Score=128.27  Aligned_cols=175  Identities=15%  Similarity=0.140  Sum_probs=109.9

Q ss_pred             CcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCC-------CcEEEEEeCCHHHHHHHHHHH
Q 017476          168 GVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS-------KGSIIAVDLNPLAAAVAAFNA  240 (371)
Q Consensus       168 ~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~-------~~~V~gvDis~~al~~A~~n~  240 (371)
                      .++.|...++.+++.+.... .........+|||+|||+|.+.+.++..+..       ...++|+|+++.++..|+.|+
T Consensus         5 qfyTP~~ia~~mv~~~~~~~-~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l   83 (524)
T TIGR02987         5 TFFTPPDIAKAMVANLVNEI-GKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLL   83 (524)
T ss_pred             ccCCcHHHHHHHHHHHhhhc-chhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHH
Confidence            35678888999998876543 1111113568999999999999999887521       257999999999999999999


Q ss_pred             HHcCCCCcEEEEEcCccccc----ccCCCceeEEEEcCCCCCCCCcc-cch---hh---------------hcccCcccc
Q 017476          241 QRYGLQDIIEIRQGSWFGKL----KDVEGKLSGVVSNPPYIPSDDIS-GLQ---VE---------------VGKHEPRLA  297 (371)
Q Consensus       241 ~~~gl~~~v~~~~gD~~~~l----~~~~~~fDlIvsNPPYi~~~~~~-~l~---~e---------------v~~~ep~~a  297 (371)
                      ...+. ..+.+..+|.....    ....++||+||+||||....... ...   ..               ..+.-+...
T Consensus        84 ~~~~~-~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (524)
T TIGR02987        84 GEFAL-LEINVINFNSLSYVLLNIESYLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSD  162 (524)
T ss_pred             hhcCC-CCceeeecccccccccccccccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhh
Confidence            87762 22566666654321    11135899999999998643211 100   00               000000000


Q ss_pred             ccCCCCc-HHHHHH-HHHHHhcccccCcEEEEEECC----cCcHHHHHHHHhc
Q 017476          298 LDGGVDG-LDYLLH-LCNGTASMLKPGGFFAFETNG----EKQCKFLKNYLEN  344 (371)
Q Consensus       298 L~gg~dG-l~~~~~-il~~a~~~LkpgG~lvle~~~----~~q~~~v~~~l~~  344 (371)
                      -.....| -..|.. +++.+.+.|++||++.+.++.    ....+.+++.+.+
T Consensus       163 ~~~~~~g~~~~y~~~f~~~~~~lL~~~G~~~~I~P~s~l~~~~~~~lR~~ll~  215 (524)
T TIGR02987       163 PIRKYAGVGTEYSRVFEEISLEIANKNGYVSIISPASWLGDKTGENLREYIFN  215 (524)
T ss_pred             hhcccCCcccHHHHHHHHHHHHhcCCCCEEEEEEChHHhcCccHHHHHHHHHh
Confidence            0000012 124444 457789999999999998852    3456678776654

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.37  E-value=9.3e-12  Score=112.30  Aligned_cols=105  Identities=28%  Similarity=0.267  Sum_probs=79.5

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      .+++++||+|||.|..++.||+.   +..|+|+|+|+.+++.+++.++..+++  |+....|+.+...  .+.||+|++-
T Consensus        29 ~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~--~~~yD~I~st  101 (192)
T PF03848_consen   29 LKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDF--PEEYDFIVST  101 (192)
T ss_dssp             S-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS---TTTEEEEEEE
T ss_pred             cCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccc--cCCcCEEEEE
Confidence            35779999999999999999994   689999999999999999998888886  9999999866432  4689999972


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                            ..+..++++.                  ...+++...+.++|||+++++.
T Consensus       102 ------~v~~fL~~~~------------------~~~i~~~m~~~~~pGG~~li~~  133 (192)
T PF03848_consen  102 ------VVFMFLQREL------------------RPQIIENMKAATKPGGYNLIVT  133 (192)
T ss_dssp             ------SSGGGS-GGG------------------HHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ------EEeccCCHHH------------------HHHHHHHHHhhcCCcEEEEEEE
Confidence                  1122222222                  3478899999999999998864

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.36  E-value=3.4e-11  Score=107.99  Aligned_cols=139  Identities=19%  Similarity=0.159  Sum_probs=96.6

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCC
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP  275 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPP  275 (371)
                      -.++||+|||.|.++..||.+.   .+++++|+|+.|++.|++.+..  .+ +|+++++|+-+..+  .++||+||.   
T Consensus        44 y~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~--~~-~V~~~~~dvp~~~P--~~~FDLIV~---  112 (201)
T PF05401_consen   44 YRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAG--LP-HVEWIQADVPEFWP--EGRFDLIVL---  112 (201)
T ss_dssp             EEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT---S-SEEEEES-TTT-----SS-EEEEEE---
T ss_pred             cceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCC--CC-CeEEEECcCCCCCC--CCCeeEEEE---
Confidence            3589999999999999999974   6899999999999999998764  33 59999999977654  489999998   


Q ss_pred             CCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC---------CcCcHHHHHHHHhccc
Q 017476          276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN---------GEKQCKFLKNYLENDS  346 (371)
Q Consensus       276 Yi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~---------~~~q~~~v~~~l~~~~  346 (371)
                                 .||..|-.         ..+.++.++..+...|+|||.+++-+.         ..-.++.|.++|.+  
T Consensus       113 -----------SEVlYYL~---------~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~--  170 (201)
T PF05401_consen  113 -----------SEVLYYLD---------DAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQE--  170 (201)
T ss_dssp             -----------ES-GGGSS---------SHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHH--
T ss_pred             -----------ehHhHcCC---------CHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHH--
Confidence                       45655531         245677888999999999999999873         22346778888885  


Q ss_pred             cCCceeEEEEe--cCCCCceEEEEE
Q 017476          347 ACSFCNVSIVS--DFAGIQRFVTGF  369 (371)
Q Consensus       347 ~~gf~~v~~~~--Dl~g~~R~~~a~  369 (371)
                        .+.+|+-+.  .-.-.+-+++++
T Consensus       171 --~~~~~~~~~~~~~~~~~~~~~~~  193 (201)
T PF05401_consen  171 --HLTEVERVECRGGSPNEDCLLAR  193 (201)
T ss_dssp             --HSEEEEEEEEE-SSTTSEEEEEE
T ss_pred             --HhhheeEEEEcCCCCCCceEeee
Confidence              366665433  333345555554

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.36  E-value=6.6e-12  Score=111.19  Aligned_cols=77  Identities=18%  Similarity=0.215  Sum_probs=64.4

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      .++.+|||+|||+|.++..+++.   ..+|+|+|+++.+++.+++|+..   .++++++++|+.+.... ...||.|++|
T Consensus        12 ~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~-~~~~d~vi~n   84 (169)
T smart00650       12 RPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLP-KLQPYKVVGN   84 (169)
T ss_pred             CCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCcc-ccCCCEEEEC
Confidence            34569999999999999999985   46999999999999999999854   23699999999775322 2469999999


Q ss_pred             CCCC
Q 017476          274 PPYI  277 (371)
Q Consensus       274 PPYi  277 (371)
                      |||.
T Consensus        85 ~Py~   88 (169)
T smart00650       85 LPYN   88 (169)
T ss_pred             CCcc
Confidence            9995

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.36  E-value=8.3e-12  Score=114.58  Aligned_cols=120  Identities=22%  Similarity=0.331  Sum_probs=101.1

Q ss_pred             chHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 017476          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ  253 (371)
Q Consensus       174 p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~  253 (371)
                      |++-.+...++...       .+++|||+||+.|.-++.+|..++.+++++.+|++++..+.|++|+++.|+.++|.++.
T Consensus        45 ~e~g~~L~~L~~~~-------~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~  117 (219)
T COG4122          45 PETGALLRLLARLS-------GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLL  117 (219)
T ss_pred             hhHHHHHHHHHHhc-------CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEe
Confidence            77777777776554       46799999999999999999998548899999999999999999999999999999999


Q ss_pred             -cCccccccc-CCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          254 -GSWFGKLKD-VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       254 -gD~~~~l~~-~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                       +|+.+.+.. ..+.||+|+.+                  +           .-..|..+++.+.+.|+|||.+++.-
T Consensus       118 ~gdal~~l~~~~~~~fDliFID------------------a-----------dK~~yp~~le~~~~lLr~GGliv~DN  166 (219)
T COG4122         118 GGDALDVLSRLLDGSFDLVFID------------------A-----------DKADYPEYLERALPLLRPGGLIVADN  166 (219)
T ss_pred             cCcHHHHHHhccCCCccEEEEe------------------C-----------ChhhCHHHHHHHHHHhCCCcEEEEee
Confidence             598887664 46899999972                  1           12446688889999999999999853

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=1.5e-11  Score=123.92  Aligned_cols=147  Identities=19%  Similarity=0.182  Sum_probs=117.1

Q ss_pred             ceeeEeeCCcccc--cchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 017476          160 DLVLSVEEGVFIP--RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA  237 (371)
Q Consensus       160 ~~~~~v~~~vliP--rp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~  237 (371)
                      +..|.++++.|+.  ...++.|++++.+++    +..++.+++|+.||.|.+++.+|+.   ..+|+|||+++++++.|+
T Consensus       260 ~~~~~~~~~sF~Q~N~~~~ekl~~~a~~~~----~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~  332 (432)
T COG2265         260 GVSFQISPRSFFQVNPAVAEKLYETALEWL----ELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQ  332 (432)
T ss_pred             ceEEEeCCCCceecCHHHHHHHHHHHHHHH----hhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHH
Confidence            4678888888884  367899999999998    2334569999999999999999975   479999999999999999


Q ss_pred             HHHHHcCCCCcEEEEEcCcccccccCC--CceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHH
Q 017476          238 FNAQRYGLQDIIEIRQGSWFGKLKDVE--GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGT  315 (371)
Q Consensus       238 ~n~~~~gl~~~v~~~~gD~~~~l~~~~--~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a  315 (371)
                      +|++.|++.| ++|..+|..+......  ..+|.||.|||=-.                          ++  +.+++.+
T Consensus       333 ~NA~~n~i~N-~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G--------------------------~~--~~~lk~l  383 (432)
T COG2265         333 ENAAANGIDN-VEFIAGDAEEFTPAWWEGYKPDVVVVDPPRAG--------------------------AD--REVLKQL  383 (432)
T ss_pred             HHHHHcCCCc-EEEEeCCHHHHhhhccccCCCCEEEECCCCCC--------------------------CC--HHHHHHH
Confidence            9999999988 9999999877655432  47899999999321                          11  0233222


Q ss_pred             hcccccCcEEEEEECCcCcHHHHHHHHh
Q 017476          316 ASMLKPGGFFAFETNGEKQCKFLKNYLE  343 (371)
Q Consensus       316 ~~~LkpgG~lvle~~~~~q~~~v~~~l~  343 (371)
                       ..++|..++++.++....+..+..+..
T Consensus       384 -~~~~p~~IvYVSCNP~TlaRDl~~L~~  410 (432)
T COG2265         384 -AKLKPKRIVYVSCNPATLARDLAILAS  410 (432)
T ss_pred             -HhcCCCcEEEEeCCHHHHHHHHHHHHh
Confidence             356888999999988777777777765

>PRK00811 spermidine synthase; Provisional

Probab=99.35  E-value=1.9e-11  Score=117.25  Aligned_cols=150  Identities=15%  Similarity=0.200  Sum_probs=104.8

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC--C--CCcEEEEEcCcccccccCCCceeEE
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG--L--QDIIEIRQGSWFGKLKDVEGKLSGV  270 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~g--l--~~~v~~~~gD~~~~l~~~~~~fDlI  270 (371)
                      .+++||++|||+|.++..+++. .+..+|++||+++++++.|++++...+  .  .++++++.+|..+.+....++||+|
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~-~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI  154 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKH-PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI  154 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcC-CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence            4679999999999999999885 245699999999999999999986532  2  4579999999987665445789999


Q ss_pred             EEcC--CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC-cCcHHHHHHHHhcccc
Q 017476          271 VSNP--PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG-EKQCKFLKNYLENDSA  347 (371)
Q Consensus       271 vsNP--PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~-~~q~~~v~~~l~~~~~  347 (371)
                      ++|.  |+.+...                       + ....+++.+.+.|+|||++++.... ..+.+.+..+.+.. .
T Consensus       155 i~D~~dp~~~~~~-----------------------l-~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl-~  209 (283)
T PRK00811        155 IVDSTDPVGPAEG-----------------------L-FTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKL-K  209 (283)
T ss_pred             EECCCCCCCchhh-----------------------h-hHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHH-H
Confidence            9973  4321100                       0 1247788889999999999997632 22344444444432 1


Q ss_pred             CCceeEEEEec----C-CCCceEEEEEe
Q 017476          348 CSFCNVSIVSD----F-AGIQRFVTGFR  370 (371)
Q Consensus       348 ~gf~~v~~~~D----l-~g~~R~~~a~~  370 (371)
                      .-|..+..+..    + .|..-|++|.+
T Consensus       210 ~~F~~v~~~~~~vp~~~~~~w~f~~as~  237 (283)
T PRK00811        210 EVFPIVRPYQAAIPTYPSGLWSFTFASK  237 (283)
T ss_pred             HHCCCEEEEEeECCcccCchheeEEeec
Confidence            33767666553    2 45555666643

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=99.34  E-value=1.7e-11  Score=118.59  Aligned_cols=137  Identities=20%  Similarity=0.280  Sum_probs=103.4

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-CcccccccCCCceeEEEE
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG-SWFGKLKDVEGKLSGVVS  272 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~g-D~~~~l~~~~~~fDlIvs  272 (371)
                      .++..|||..||||.+++.+...   +++++|.|++..|+.-|+.|++.+++++ ..++.+ |+.. ++..+..+|.|++
T Consensus       196 ~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~-lpl~~~~vdaIat  270 (347)
T COG1041         196 KRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATN-LPLRDNSVDAIAT  270 (347)
T ss_pred             ccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEeccccc-CCCCCCccceEEe
Confidence            45679999999999999999873   7899999999999999999999999876 656666 8855 3322345999999


Q ss_pred             cCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCcee
Q 017476          273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCN  352 (371)
Q Consensus       273 NPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~  352 (371)
                      +|||..+.......                 =.+.|..+++.+.+.|++||++++-.+ ...   .... .   ..+|.-
T Consensus       271 DPPYGrst~~~~~~-----------------l~~Ly~~~le~~~evLk~gG~~vf~~p-~~~---~~~~-~---~~~f~v  325 (347)
T COG1041         271 DPPYGRSTKIKGEG-----------------LDELYEEALESASEVLKPGGRIVFAAP-RDP---RHEL-E---ELGFKV  325 (347)
T ss_pred             cCCCCccccccccc-----------------HHHHHHHHHHHHHHHhhcCcEEEEecC-Ccc---hhhH-h---hcCceE
Confidence            99998654322110                 135688999999999999999999984 111   1222 2   256877


Q ss_pred             EEEEecCC
Q 017476          353 VSIVSDFA  360 (371)
Q Consensus       353 v~~~~Dl~  360 (371)
                      ++.+..+.
T Consensus       326 ~~~~~~~~  333 (347)
T COG1041         326 LGRFTMRV  333 (347)
T ss_pred             EEEEEEee
Confidence            77776653

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.34  E-value=1.3e-11  Score=113.18  Aligned_cols=134  Identities=25%  Similarity=0.334  Sum_probs=96.3

Q ss_pred             ccccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 017476          156 EHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAV  235 (371)
Q Consensus       156 ~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~  235 (371)
                      ..|.+..+.++.+..+..|   .++..+++.+    +..++.+|||+|||||..+..++...++...|++||+++..++.
T Consensus        40 ~aY~d~~l~i~~~~~is~P---~~~a~~l~~L----~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~  112 (209)
T PF01135_consen   40 LAYEDRPLPIGCGQTISAP---SMVARMLEAL----DLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAER  112 (209)
T ss_dssp             GTTSSS-EEEETTEEE--H---HHHHHHHHHT----TC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHH
T ss_pred             CCCCCCCeeecceeechHH---HHHHHHHHHH----hcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHH
Confidence            3455677777777666554   3455555555    34467899999999999999999988777789999999999999


Q ss_pred             HHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHH
Q 017476          236 AAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGT  315 (371)
Q Consensus       236 A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a  315 (371)
                      |++|+...+..+ +.++.+|....++. .+.||.|+++.-.-              ..              ...+    
T Consensus       113 A~~~l~~~~~~n-v~~~~gdg~~g~~~-~apfD~I~v~~a~~--------------~i--------------p~~l----  158 (209)
T PF01135_consen  113 ARRNLARLGIDN-VEVVVGDGSEGWPE-EAPFDRIIVTAAVP--------------EI--------------PEAL----  158 (209)
T ss_dssp             HHHHHHHHTTHS-EEEEES-GGGTTGG-G-SEEEEEESSBBS--------------S----------------HHH----
T ss_pred             HHHHHHHhccCc-eeEEEcchhhcccc-CCCcCEEEEeeccc--------------hH--------------HHHH----
Confidence            999999999874 99999998776654 46899999953210              00              1133    


Q ss_pred             hcccccCcEEEEEEC
Q 017476          316 ASMLKPGGFFAFETN  330 (371)
Q Consensus       316 ~~~LkpgG~lvle~~  330 (371)
                      .+.|++||++++-+.
T Consensus       159 ~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  159 LEQLKPGGRLVAPIG  173 (209)
T ss_dssp             HHTEEEEEEEEEEES
T ss_pred             HHhcCCCcEEEEEEc
Confidence            367999999999884

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.34  E-value=8.6e-12  Score=114.08  Aligned_cols=110  Identities=22%  Similarity=0.229  Sum_probs=80.2

Q ss_pred             EeecccccceeeEeeCCcccccchHHHHHHHHHHHhhhc-CCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCH
Q 017476          152 LVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRD-NDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNP  230 (371)
Q Consensus       152 i~g~~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~-~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~  230 (371)
                      +++...||+-+|   ...+++|..++.++...++.+... ....++.+|||+|||+|.++..+++.+ ++.+++|+|+|+
T Consensus         2 ~~~~~~fw~~~~---g~~~~~rn~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~   77 (204)
T TIGR03587         2 KTEQEQFWAGEF---GKEYIDRNSRQSLVAAKLAMFARALNRLPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINE   77 (204)
T ss_pred             cchHHHHhcCcc---cchhhhccccHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCH
Confidence            556667777666   223788877776555444433110 012245689999999999999999875 678999999999


Q ss_pred             HHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          231 LAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       231 ~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      ++++.|+++.     + ++.+.++|+.++..  .++||+|++|
T Consensus        78 ~~l~~A~~~~-----~-~~~~~~~d~~~~~~--~~sfD~V~~~  112 (204)
T TIGR03587        78 YAVEKAKAYL-----P-NINIIQGSLFDPFK--DNFFDLVLTK  112 (204)
T ss_pred             HHHHHHHhhC-----C-CCcEEEeeccCCCC--CCCEEEEEEC
Confidence            9999999874     1 37788999877433  4789999995

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK06922 hypothetical protein; Provisional

Probab=99.33  E-value=2.1e-11  Score=126.84  Aligned_cols=119  Identities=15%  Similarity=0.128  Sum_probs=89.8

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc-cCCCceeEEEEc
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-DVEGKLSGVVSN  273 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~-~~~~~fDlIvsN  273 (371)
                      ++.+|||+|||+|..+..+++.+ ++.+|+|+|+|+.|++.|+++....+.  +++++++|..+... ...++||+|++|
T Consensus       418 ~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~--~ie~I~gDa~dLp~~fedeSFDvVVsn  494 (677)
T PRK06922        418 KGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGR--SWNVIKGDAINLSSSFEKESVDTIVYS  494 (677)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCC--CeEEEEcchHhCccccCCCCEEEEEEc
Confidence            46799999999999999999875 889999999999999999998766553  48899999865211 124689999999


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      +++..-.          .|.|   ..++..+.+....+++.+.+.|||||.+++..
T Consensus       495 ~vLH~L~----------syIp---~~g~~f~~edl~kiLreI~RVLKPGGrLII~D  537 (677)
T PRK06922        495 SILHELF----------SYIE---YEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD  537 (677)
T ss_pred             hHHHhhh----------hhcc---cccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            8763110          0111   01111234567789999999999999999975

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.33  E-value=2.4e-11  Score=111.41  Aligned_cols=100  Identities=17%  Similarity=0.236  Sum_probs=80.5

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      .++.+|||+|||+|.++..+++..   .+|+++|+++++++.|++|++++++.+ ++++.+|..+.+.. .++||+|+++
T Consensus        77 ~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~-~~~fD~I~~~  151 (212)
T PRK00312         77 KPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHGDGWKGWPA-YAPFDRILVT  151 (212)
T ss_pred             CCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEECCcccCCCc-CCCcCEEEEc
Confidence            356799999999999999888763   489999999999999999999998865 99999998765443 3689999996


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN  330 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~  330 (371)
                      .+..                                .+.+...+.|+|||.+++..+
T Consensus       152 ~~~~--------------------------------~~~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        152 AAAP--------------------------------EIPRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             cCch--------------------------------hhhHHHHHhcCCCcEEEEEEc
Confidence            4321                                122344578999999999884

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.32  E-value=3.8e-11  Score=110.81  Aligned_cols=109  Identities=22%  Similarity=0.294  Sum_probs=85.6

Q ss_pred             CCCCCCeEEEECCcccHHHHHHHHHhCCC-----cEEEEEeCCHHHHHHHHHHHHHcCCCCc--EEEEEcCcccccccCC
Q 017476          192 DGLRDGFWVDLGTGSGAIAIGIARVLGSK-----GSIIAVDLNPLAAAVAAFNAQRYGLQDI--IEIRQGSWFGKLKDVE  264 (371)
Q Consensus       192 ~~~~~~~VLDlG~GsG~~al~la~~~~~~-----~~V~gvDis~~al~~A~~n~~~~gl~~~--v~~~~gD~~~~l~~~~  264 (371)
                      ....+.++||++||||-++..+.+.....     .+|+..|+|+++|+++++.+.+.++...  +.++++|+.+ ++..+
T Consensus        97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~-LpFdd  175 (296)
T KOG1540|consen   97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAED-LPFDD  175 (296)
T ss_pred             CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCccc-CCCCC
Confidence            34456899999999999999999886322     7999999999999999999988777654  9999999954 55556


Q ss_pred             CceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEE
Q 017476          265 GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF  327 (371)
Q Consensus       265 ~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvl  327 (371)
                      ..||..++-             -.. +.            ..++.+.+++|+++|||||++.+
T Consensus       176 ~s~D~yTia-------------fGI-RN------------~th~~k~l~EAYRVLKpGGrf~c  212 (296)
T KOG1540|consen  176 DSFDAYTIA-------------FGI-RN------------VTHIQKALREAYRVLKPGGRFSC  212 (296)
T ss_pred             CcceeEEEe-------------cce-ec------------CCCHHHHHHHHHHhcCCCcEEEE
Confidence            789987761             011 11            12355889999999999998865

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.32  E-value=7.5e-12  Score=112.91  Aligned_cols=106  Identities=24%  Similarity=0.214  Sum_probs=84.2

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      ....+|.|||||+|..+..+++++ |.+.|+|+|-|++|++.|++.     ++ +++|.++|+.+.-+.  ..+|++++|
T Consensus        29 ~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~r-----lp-~~~f~~aDl~~w~p~--~~~dllfaN   99 (257)
T COG4106          29 ERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQR-----LP-DATFEEADLRTWKPE--QPTDLLFAN   99 (257)
T ss_pred             cccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHh-----CC-CCceecccHhhcCCC--Cccchhhhh
Confidence            346799999999999999999998 999999999999999999765     23 389999998765443  689999998


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCc
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQ  334 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q  334 (371)
                      --+              .|-|.            ..+++......|.|||+|.+.++++..
T Consensus       100 Avl--------------qWlpd------------H~~ll~rL~~~L~Pgg~LAVQmPdN~d  134 (257)
T COG4106         100 AVL--------------QWLPD------------HPELLPRLVSQLAPGGVLAVQMPDNLD  134 (257)
T ss_pred             hhh--------------hhccc------------cHHHHHHHHHhhCCCceEEEECCCccC
Confidence            443              23222            125666677899999999999975543

>PRK03612 spermidine synthase; Provisional

Probab=99.30  E-value=5.2e-11  Score=123.40  Aligned_cols=138  Identities=15%  Similarity=0.180  Sum_probs=94.8

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-----CC-CCcEEEEEcCcccccccCCCcee
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY-----GL-QDIIEIRQGSWFGKLKDVEGKLS  268 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~-----gl-~~~v~~~~gD~~~~l~~~~~~fD  268 (371)
                      ++++|||+|||+|..+..+++. ++..+|++||+|+++++.|++|....     .+ .++++++.+|..+.+....++||
T Consensus       297 ~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD  375 (521)
T PRK03612        297 RPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD  375 (521)
T ss_pred             CCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence            4679999999999999999874 23379999999999999999963211     22 24799999999876655457899


Q ss_pred             EEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC-cCcHHHHHHHHhcccc
Q 017476          269 GVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG-EKQCKFLKNYLENDSA  347 (371)
Q Consensus       269 lIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~-~~q~~~v~~~l~~~~~  347 (371)
                      +|++|+|.........                     -..+++++.+.+.|+|||.+++.... ....+.+.++.+...+
T Consensus       376 vIi~D~~~~~~~~~~~---------------------L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~  434 (521)
T PRK03612        376 VIIVDLPDPSNPALGK---------------------LYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEA  434 (521)
T ss_pred             EEEEeCCCCCCcchhc---------------------cchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHH
Confidence            9999987532111000                     11246788889999999999997632 1223333333333223


Q ss_pred             CCceeEEE
Q 017476          348 CSFCNVSI  355 (371)
Q Consensus       348 ~gf~~v~~  355 (371)
                      .|| .+..
T Consensus       435 ~gf-~v~~  441 (521)
T PRK03612        435 AGL-ATTP  441 (521)
T ss_pred             cCC-EEEE
Confidence            668 4433

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.30  E-value=7.3e-13  Score=106.45  Aligned_cols=98  Identities=21%  Similarity=0.305  Sum_probs=62.3

Q ss_pred             EEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccC-CCceeEEEEcCCCCC
Q 017476          200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV-EGKLSGVVSNPPYIP  278 (371)
Q Consensus       200 LDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~-~~~fDlIvsNPPYi~  278 (371)
                      ||+|||+|.++..++..+ +..+++|+|+|+.+++.|++++...+... ......+..+..... .++||+|+++     
T Consensus         1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fD~V~~~-----   73 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDN-FERLRFDVLDLFDYDPPESFDLVVAS-----   73 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-----
T ss_pred             CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeecCChhhcccccccceehhh-----
Confidence            799999999999999986 88999999999999999999988876543 333333333322211 2589999994     


Q ss_pred             CCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEE
Q 017476          279 SDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFF  325 (371)
Q Consensus       279 ~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~l  325 (371)
                               .+..|            ++..+.+++.+.++|+|||+|
T Consensus        74 ---------~vl~~------------l~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   74 ---------NVLHH------------LEDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             ----------TTS--------------S-HHHHHHHHTTT-TSS-EE
T ss_pred             ---------hhHhh------------hhhHHHHHHHHHHHcCCCCCC
Confidence                     22233            234558999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=99.29  E-value=1.8e-11  Score=122.70  Aligned_cols=163  Identities=20%  Similarity=0.290  Sum_probs=120.7

Q ss_pred             CCceeeEeec----ccccceeeEeeCCcccc--cchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCC
Q 017476          146 RKPFQYLVGC----EHWRDLVLSVEEGVFIP--RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS  219 (371)
Q Consensus       146 ~~P~~yi~g~----~~f~~~~~~v~~~vliP--rp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~  219 (371)
                      +.|++++-|.    ..+.++.|.++|+.|+.  ....|.+...+-++.    ....++.++|++||||.+++++|+..  
T Consensus       332 ~~~~~l~~~~~~I~E~l~~ltF~iSp~AFFQ~Nt~~aevLys~i~e~~----~l~~~k~llDv~CGTG~iglala~~~--  405 (534)
T KOG2187|consen  332 GKPLQLVGGDPYITESLLGLTFRISPGAFFQTNTSAAEVLYSTIGEWA----GLPADKTLLDVCCGTGTIGLALARGV--  405 (534)
T ss_pred             CCCeEEEccccEEEeecCCeEEEECCchhhccCcHHHHHHHHHHHHHh----CCCCCcEEEEEeecCCceehhhhccc--
Confidence            4788888775    45678999999999996  477889999998887    33345789999999999999999964  


Q ss_pred             CcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCC----Ccee-EEEEcCCCCCCCCcccchhhhcccCc
Q 017476          220 KGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVE----GKLS-GVVSNPPYIPSDDISGLQVEVGKHEP  294 (371)
Q Consensus       220 ~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~----~~fD-lIvsNPPYi~~~~~~~l~~ev~~~ep  294 (371)
                       .+|+|||+++++++.|++|++.||+++ .+|++|-..+..+.+.    +.-+ ++|.|||=.                 
T Consensus       406 -~~ViGvEi~~~aV~dA~~nA~~NgisN-a~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~-----------------  466 (534)
T KOG2187|consen  406 -KRVIGVEISPDAVEDAEKNAQINGISN-ATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPRK-----------------  466 (534)
T ss_pred             -cceeeeecChhhcchhhhcchhcCccc-eeeeecchhhccchhcccCCCCCceEEEECCCcc-----------------
Confidence             799999999999999999999999986 9999995544333221    2334 788888842                 


Q ss_pred             cccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhc
Q 017476          295 RLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLEN  344 (371)
Q Consensus       295 ~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~  344 (371)
                               |++.  .+++....+-++-=.+++.++...++..+..++..
T Consensus       467 ---------Glh~--~~ik~l~~~~~~~rlvyvSCn~~t~ar~v~~lc~~  505 (534)
T KOG2187|consen  467 ---------GLHM--KVIKALRAYKNPRRLVYVSCNPHTAARNVIDLCSS  505 (534)
T ss_pred             ---------cccH--HHHHHHHhccCccceEEEEcCHHHhhhhHHHhhcC
Confidence                     1111  34444444444666777777655556666666653

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.29  E-value=3.1e-11  Score=111.16  Aligned_cols=108  Identities=16%  Similarity=0.076  Sum_probs=76.4

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-----------CCCCcEEEEEcCcccccccC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY-----------GLQDIIEIRQGSWFGKLKDV  263 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~-----------gl~~~v~~~~gD~~~~l~~~  263 (371)
                      ++.+|||+|||.|..++.+|++   +.+|+|||+|+.|++.+.+.....           .-..+++++++|+++.....
T Consensus        34 ~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~  110 (213)
T TIGR03840        34 AGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD  110 (213)
T ss_pred             CCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence            4569999999999999999984   689999999999999864321100           00235899999998754332


Q ss_pred             CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          264 EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       264 ~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      .++||.|+-.-      .+.++++                  +.-..+++.+.+.|+|||++++++
T Consensus       111 ~~~fD~i~D~~------~~~~l~~------------------~~R~~~~~~l~~lLkpgG~~ll~~  152 (213)
T TIGR03840       111 LGPVDAVYDRA------ALIALPE------------------EMRQRYAAHLLALLPPGARQLLIT  152 (213)
T ss_pred             CCCcCEEEech------hhccCCH------------------HHHHHHHHHHHHHcCCCCeEEEEE
Confidence            36789888521      1112222                  223368888899999999877764

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.29  E-value=1.1e-10  Score=113.50  Aligned_cols=107  Identities=21%  Similarity=0.126  Sum_probs=82.7

Q ss_pred             cceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476          159 RDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       159 ~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~  238 (371)
                      ++....++...+.+++.++.+++.+++++ ......++.+|||+|||+|.+++.+++.   +.+|+|+|+|+.|++.|++
T Consensus       109 y~~~d~v~~~~l~~~~~~~~~v~~~l~~l-~~~~~~~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~  184 (315)
T PLN02585        109 YGETDEVNKVQLDIRLGHAQTVEKVLLWL-AEDGSLAGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAER  184 (315)
T ss_pred             cCCccccCceeeecccChHHHHHHHHHHH-HhcCCCCCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHH
Confidence            45555666667788888888888888877 3211234679999999999999999984   4799999999999999999


Q ss_pred             HHHHcCC----CCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          239 NAQRYGL----QDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       239 n~~~~gl----~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      |+...+.    ..++++..+|+.+ +   .++||+|+|+
T Consensus       185 ~~~~~~~~~~~~~~~~f~~~Dl~~-l---~~~fD~Vv~~  219 (315)
T PLN02585        185 RAKEALAALPPEVLPKFEANDLES-L---SGKYDTVTCL  219 (315)
T ss_pred             HHHhcccccccccceEEEEcchhh-c---CCCcCEEEEc
Confidence            9876522    1348899999743 2   3689999984

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.28  E-value=7.5e-11  Score=108.78  Aligned_cols=106  Identities=24%  Similarity=0.289  Sum_probs=82.0

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      .+.+|||+|||+|.++..+++.. +..+++++|+++.+++.++++..     .++.++.+|+.+.. ...++||+|++|-
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~-~~~~~fD~vi~~~  106 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLP-LEDSSFDLIVSNL  106 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCC-CCCCceeEEEEhh
Confidence            45689999999999999999975 77889999999999999887653     25889999986532 2346899999963


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcC
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEK  333 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~  333 (371)
                      ..              .|            ......+++.+.+.|+|||++++...+..
T Consensus       107 ~l--------------~~------------~~~~~~~l~~~~~~L~~~G~l~~~~~~~~  139 (240)
T TIGR02072       107 AL--------------QW------------CDDLSQALSELARVLKPGGLLAFSTFGPG  139 (240)
T ss_pred             hh--------------hh------------ccCHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence            22              11            11234788899999999999999774433

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.28  E-value=7.2e-12  Score=116.14  Aligned_cols=101  Identities=24%  Similarity=0.309  Sum_probs=80.2

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC-----cEEEEEcCcccccccCCCceeEE
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQD-----IIEIRQGSWFGKLKDVEGKLSGV  270 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~-----~v~~~~gD~~~~l~~~~~~fDlI  270 (371)
                      +.+|||+|||+|.++..||+.   +++|+|+|+++++++.|++.....-..+     ++++...|..+    ..++||.|
T Consensus        90 g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~----~~~~fDaV  162 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEG----LTGKFDAV  162 (282)
T ss_pred             CceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhh----ccccccee
Confidence            567999999999999999995   5899999999999999999854432222     35666666533    23579999


Q ss_pred             EEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       271 vsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      +|              .||..|            .++...+++.+.+.|||||.+++.+
T Consensus       163 vc--------------sevleH------------V~dp~~~l~~l~~~lkP~G~lfitt  195 (282)
T KOG1270|consen  163 VC--------------SEVLEH------------VKDPQEFLNCLSALLKPNGRLFITT  195 (282)
T ss_pred             ee--------------HHHHHH------------HhCHHHHHHHHHHHhCCCCceEeee
Confidence            99              566555            4556789999999999999999965

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.28  E-value=1.8e-10  Score=106.09  Aligned_cols=88  Identities=24%  Similarity=0.285  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcC
Q 017476          176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGS  255 (371)
Q Consensus       176 te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD  255 (371)
                      .+.+.+.+++++ .. ...++.+|||+|||+|.++..+++.   +.+|+|+|+|+++++.|++++...+..+++.+..+|
T Consensus        38 ~~~~~~~~~~~l-~~-~~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d  112 (219)
T TIGR02021        38 RAAMRRKLLDWL-PK-DPLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVND  112 (219)
T ss_pred             HHHHHHHHHHHH-hc-CCCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECC
Confidence            345555666665 21 1235679999999999999999874   469999999999999999999888776679999999


Q ss_pred             cccccccCCCceeEEEE
Q 017476          256 WFGKLKDVEGKLSGVVS  272 (371)
Q Consensus       256 ~~~~l~~~~~~fDlIvs  272 (371)
                      +.+..    ++||+|++
T Consensus       113 ~~~~~----~~fD~ii~  125 (219)
T TIGR02021       113 LLSLC----GEFDIVVC  125 (219)
T ss_pred             hhhCC----CCcCEEEE
Confidence            86532    68999998

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=5.6e-11  Score=107.85  Aligned_cols=129  Identities=24%  Similarity=0.366  Sum_probs=97.0

Q ss_pred             ccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 017476          158 WRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA  237 (371)
Q Consensus       158 f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~  237 (371)
                      |-+..+-+..+..|-.|.   ++-.+++.+    ...++.+|||+|||||..+..+|+..   .+|+.+|..++..+.|+
T Consensus        42 Y~d~~lpi~~gqtis~P~---~vA~m~~~L----~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~  111 (209)
T COG2518          42 YEDRALPIGCGQTISAPH---MVARMLQLL----ELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQAR  111 (209)
T ss_pred             ccCCcccCCCCceecCcH---HHHHHHHHh----CCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHH
Confidence            345555666777775553   334444444    34467899999999999999999974   49999999999999999


Q ss_pred             HHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhc
Q 017476          238 FNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTAS  317 (371)
Q Consensus       238 ~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~  317 (371)
                      +|++..|+.| |.++++|....++. ...||.|+.+-      ..        ..-|              +.++    +
T Consensus       112 ~~L~~lg~~n-V~v~~gDG~~G~~~-~aPyD~I~Vta------aa--------~~vP--------------~~Ll----~  157 (209)
T COG2518         112 RNLETLGYEN-VTVRHGDGSKGWPE-EAPYDRIIVTA------AA--------PEVP--------------EALL----D  157 (209)
T ss_pred             HHHHHcCCCc-eEEEECCcccCCCC-CCCcCEEEEee------cc--------CCCC--------------HHHH----H
Confidence            9999999987 99999999876654 47899999831      00        0001              1333    6


Q ss_pred             ccccCcEEEEEEC
Q 017476          318 MLKPGGFFAFETN  330 (371)
Q Consensus       318 ~LkpgG~lvle~~  330 (371)
                      .|++||++++-++
T Consensus       158 QL~~gGrlv~PvG  170 (209)
T COG2518         158 QLKPGGRLVIPVG  170 (209)
T ss_pred             hcccCCEEEEEEc
Confidence            8999999999994

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=99.27  E-value=6.4e-11  Score=111.18  Aligned_cols=120  Identities=17%  Similarity=0.323  Sum_probs=98.3

Q ss_pred             cchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q 017476          173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIR  252 (371)
Q Consensus       173 rp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~  252 (371)
                      .+++-.+...+....       .+++|||+||++|.-++.+|+.++++++|+.+|.+++..+.|++|++..|+.++|+++
T Consensus        64 ~~~~g~lL~~l~~~~-------~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~  136 (247)
T PLN02589         64 SADEGQFLNMLLKLI-------NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFR  136 (247)
T ss_pred             CHHHHHHHHHHHHHh-------CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEE
Confidence            456666677666654       4669999999999999999998767889999999999999999999999999999999


Q ss_pred             EcCcccccccC------CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEE
Q 017476          253 QGSWFGKLKDV------EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFA  326 (371)
Q Consensus       253 ~gD~~~~l~~~------~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lv  326 (371)
                      .||+.+.++.+      .++||+|+.+                  +.           -..|...++.+.++|++||.++
T Consensus       137 ~G~a~e~L~~l~~~~~~~~~fD~iFiD------------------ad-----------K~~Y~~y~~~~l~ll~~GGviv  187 (247)
T PLN02589        137 EGPALPVLDQMIEDGKYHGTFDFIFVD------------------AD-----------KDNYINYHKRLIDLVKVGGVIG  187 (247)
T ss_pred             eccHHHHHHHHHhccccCCcccEEEec------------------CC-----------HHHhHHHHHHHHHhcCCCeEEE
Confidence            99998766542      2689999983                  10           2335567777789999999998


Q ss_pred             EE
Q 017476          327 FE  328 (371)
Q Consensus       327 le  328 (371)
                      +.
T Consensus       188 ~D  189 (247)
T PLN02589        188 YD  189 (247)
T ss_pred             Ec
Confidence            85

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.27  E-value=8.5e-11  Score=117.32  Aligned_cols=103  Identities=24%  Similarity=0.283  Sum_probs=81.5

Q ss_pred             CCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEE
Q 017476          193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS  272 (371)
Q Consensus       193 ~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvs  272 (371)
                      ..++.+|||+|||+|.++..+++..  +.+|+|+|+|+++++.|++++.  ++  .+++..+|+.+.    .++||.|++
T Consensus       165 l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l----~~~fD~Ivs  234 (383)
T PRK11705        165 LKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL----NGQFDRIVS  234 (383)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc----CCCCCEEEE
Confidence            3456799999999999999999874  5799999999999999999884  33  388888987542    368999999


Q ss_pred             cCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       273 NPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      +..+.              |-          |...+..+++.+.++|||||.+++..
T Consensus       235 ~~~~e--------------hv----------g~~~~~~~l~~i~r~LkpGG~lvl~~  267 (383)
T PRK11705        235 VGMFE--------------HV----------GPKNYRTYFEVVRRCLKPDGLFLLHT  267 (383)
T ss_pred             eCchh--------------hC----------ChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            64321              10          12345678999999999999999965

>TIGR00417 speE spermidine synthase

Probab=99.25  E-value=3.2e-10  Score=108.04  Aligned_cols=152  Identities=12%  Similarity=0.162  Sum_probs=103.4

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEEcCcccccccCCCceeEEE
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG--L-QDIIEIRQGSWFGKLKDVEGKLSGVV  271 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~g--l-~~~v~~~~gD~~~~l~~~~~~fDlIv  271 (371)
                      .+++||++|||+|.++..+++.. +..+++++|+++++++.|++++...+  + ..+++++.+|..+.+....++||+||
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi  150 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII  150 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence            45699999999999999888752 45789999999999999999875542  1 24689999998776654457899999


Q ss_pred             EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC-cCcHHHHHHHHhccccCCc
Q 017476          272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG-EKQCKFLKNYLENDSACSF  350 (371)
Q Consensus       272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~-~~q~~~v~~~l~~~~~~gf  350 (371)
                      +|++......              ..        -....+++.+.+.|+|||.+++.... ..+.+.+..+.+.. +.-|
T Consensus       151 ~D~~~~~~~~--------------~~--------l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl-~~~F  207 (270)
T TIGR00417       151 VDSTDPVGPA--------------ET--------LFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDV-KEAF  207 (270)
T ss_pred             EeCCCCCCcc--------------cc--------hhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHH-HHHC
Confidence            9876421110              00        01246788889999999999997642 22344444433322 1337


Q ss_pred             eeEEEEec----C-CCCceEEEEEe
Q 017476          351 CNVSIVSD----F-AGIQRFVTGFR  370 (371)
Q Consensus       351 ~~v~~~~D----l-~g~~R~~~a~~  370 (371)
                      ..+..+..    + .|..=|++|.+
T Consensus       208 ~~v~~~~~~vp~~~~g~~~~~~as~  232 (270)
T TIGR00417       208 PITEYYTANIPTYPSGLWTFTIGSK  232 (270)
T ss_pred             CCeEEEEEEcCccccchhEEEEEEC
Confidence            76665433    2 35556666654

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK01581 speE spermidine synthase; Validated

Probab=99.25  E-value=5.3e-10  Score=109.60  Aligned_cols=197  Identities=13%  Similarity=0.143  Sum_probs=118.2

Q ss_pred             CCceeeEeecccccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEE
Q 017476          146 RKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIA  225 (371)
Q Consensus       146 ~~P~~yi~g~~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~g  225 (371)
                      .-|+|.|.-... .++.+.++-.+-+-..+-..+.+.+......  ....+++||++|||+|..+..+.+. .+..+|++
T Consensus       104 ~S~yQ~I~I~et-~~~~L~LDG~~Q~se~DE~iYHE~Lvhp~m~--~h~~PkrVLIIGgGdG~tlrelLk~-~~v~~It~  179 (374)
T PRK01581        104 KSNYQNINLLQV-SDIRLYLDKQLQFSSVDEQIYHEALVHPIMS--KVIDPKRVLILGGGDGLALREVLKY-ETVLHVDL  179 (374)
T ss_pred             CCCCceEEEEEc-CCEEEEECCeeccccccHHHHHHHHHHHHHH--hCCCCCEEEEECCCHHHHHHHHHhc-CCCCeEEE
Confidence            357777643211 1234444444333322322233333321111  1234679999999999998888875 35579999


Q ss_pred             EeCCHHHHHHHHHHH-----HHcCC-CCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCcccccc
Q 017476          226 VDLNPLAAAVAAFNA-----QRYGL-QDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALD  299 (371)
Q Consensus       226 vDis~~al~~A~~n~-----~~~gl-~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~  299 (371)
                      ||+++++++.|++.-     ....+ .++++++.+|..+.+....++||+|++|.|-......             .   
T Consensus       180 VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~~~~-------------~---  243 (374)
T PRK01581        180 VDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDFPDPATELL-------------S---  243 (374)
T ss_pred             EeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEEEEcCCCccccch-------------h---
Confidence            999999999999631     11122 4589999999988776556789999998653211000             0   


Q ss_pred             CCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHH----HHHHHHhccccCCceeE---EEEecCCCCceEEEEEe
Q 017476          300 GGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCK----FLKNYLENDSACSFCNV---SIVSDFAGIQRFVTGFR  370 (371)
Q Consensus       300 gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~----~v~~~l~~~~~~gf~~v---~~~~Dl~g~~R~~~a~~  370 (371)
                           --.-..+++.+.+.|+|||++++.........    .+.+.+++   .+|...   ...+-+.+..-|++|.+
T Consensus       244 -----~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~---af~~v~~y~t~vPsyg~~WgF~~as~  313 (374)
T PRK01581        244 -----TLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEH---AGLTVKSYHTIVPSFGTDWGFHIAAN  313 (374)
T ss_pred             -----hhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHH---hCCceEEEEEecCCCCCceEEEEEeC
Confidence                 01124688889999999999988764333222    23444553   444322   12344555577777753

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=99.25  E-value=5.1e-11  Score=108.42  Aligned_cols=127  Identities=28%  Similarity=0.383  Sum_probs=86.9

Q ss_pred             ceeeEeeCC--cccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 017476          160 DLVLSVEEG--VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA  237 (371)
Q Consensus       160 ~~~~~v~~~--vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~  237 (371)
                      |..|.++..  .|-||-.+|..  .+.+..      .++.+|+|++||.|.+++.+|+. .....|+|+|++|.+++.++
T Consensus        72 G~~f~~D~~kvyfs~rl~~Er~--Ri~~~v------~~~e~VlD~faGIG~f~l~~ak~-~~~~~V~A~d~Np~a~~~L~  142 (200)
T PF02475_consen   72 GIRFKVDLSKVYFSPRLSTERR--RIANLV------KPGEVVLDMFAGIGPFSLPIAKH-GKAKRVYAVDLNPDAVEYLK  142 (200)
T ss_dssp             TEEEEEETTTS---GGGHHHHH--HHHTC--------TT-EEEETT-TTTTTHHHHHHH-T-SSEEEEEES-HHHHHHHH
T ss_pred             CEEEEEccceEEEccccHHHHH--HHHhcC------CcceEEEEccCCccHHHHHHhhh-cCccEEEEecCCHHHHHHHH
Confidence            555655544  44577666652  222222      24679999999999999999995 36679999999999999999


Q ss_pred             HHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhc
Q 017476          238 FNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTAS  317 (371)
Q Consensus       238 ~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~  317 (371)
                      +|++.|++++++..+++|..+.+.  .+.||-|++|.|....                              .++..+..
T Consensus       143 ~Ni~lNkv~~~i~~~~~D~~~~~~--~~~~drvim~lp~~~~------------------------------~fl~~~~~  190 (200)
T PF02475_consen  143 ENIRLNKVENRIEVINGDAREFLP--EGKFDRVIMNLPESSL------------------------------EFLDAALS  190 (200)
T ss_dssp             HHHHHTT-TTTEEEEES-GGG-----TT-EEEEEE--TSSGG------------------------------GGHHHHHH
T ss_pred             HHHHHcCCCCeEEEEcCCHHHhcC--ccccCEEEECChHHHH------------------------------HHHHHHHH
Confidence            999999999999999999987665  4799999999885310                              46667778


Q ss_pred             ccccCcEEEE
Q 017476          318 MLKPGGFFAF  327 (371)
Q Consensus       318 ~LkpgG~lvl  327 (371)
                      ++++||++-+
T Consensus       191 ~~~~~g~ihy  200 (200)
T PF02475_consen  191 LLKEGGIIHY  200 (200)
T ss_dssp             HEEEEEEEEE
T ss_pred             HhcCCcEEEC
Confidence            9999998753

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.23  E-value=6.2e-11  Score=112.63  Aligned_cols=128  Identities=20%  Similarity=0.176  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHhhhcCCCCCCCeEEEECCcccH----HHHHHHHHhC----CCcEEEEEeCCHHHHHHHHHHHH----HcC
Q 017476          177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGA----IAIGIARVLG----SKGSIIAVDLNPLAAAVAAFNAQ----RYG  244 (371)
Q Consensus       177 e~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~----~al~la~~~~----~~~~V~gvDis~~al~~A~~n~~----~~g  244 (371)
                      +.+.+.++..+........+.+|+|+|||+|.    +++.+++.+.    .+.+|+|+|+|+.|++.|++++.    ..+
T Consensus        81 ~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~  160 (264)
T smart00138       81 EALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELED  160 (264)
T ss_pred             HHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhc
Confidence            44555555544222122235699999999996    5666666542    14689999999999999998641    011


Q ss_pred             ----------------------CCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCC
Q 017476          245 ----------------------LQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGV  302 (371)
Q Consensus       245 ----------------------l~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~  302 (371)
                                            +.++|+|.++|+.+... ..++||+|+|.              .+..|-+        
T Consensus       161 ~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~-~~~~fD~I~cr--------------nvl~yf~--------  217 (264)
T smart00138      161 LPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESP-PLGDFDLIFCR--------------NVLIYFD--------  217 (264)
T ss_pred             CCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCC-ccCCCCEEEec--------------hhHHhCC--------
Confidence                                  12468999999987533 24789999992              1111111        


Q ss_pred             CcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          303 DGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       303 dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                        -.....+++.+.+.|+|||++++.+
T Consensus       218 --~~~~~~~l~~l~~~L~pGG~L~lg~  242 (264)
T smart00138      218 --EPTQRKLLNRFAEALKPGGYLFLGH  242 (264)
T ss_pred             --HHHHHHHHHHHHHHhCCCeEEEEEC
Confidence              1223478899999999999999976

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=99.23  E-value=1.4e-10  Score=101.84  Aligned_cols=78  Identities=32%  Similarity=0.493  Sum_probs=60.9

Q ss_pred             eEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCC-Cc-eeEEEEcCC
Q 017476          198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVE-GK-LSGVVSNPP  275 (371)
Q Consensus       198 ~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~-~~-fDlIvsNPP  275 (371)
                      .|+|++||.|..++.+|+.+   .+|+|||+++..++.|+.|++.+|+.++|+++++|+++.+.... .. +|+|+..||
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPP   78 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPP   78 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---
T ss_pred             EEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCC
Confidence            69999999999999999975   68999999999999999999999999999999999998765432 12 899999999


Q ss_pred             CCC
Q 017476          276 YIP  278 (371)
Q Consensus       276 Yi~  278 (371)
                      |..
T Consensus        79 WGG   81 (163)
T PF09445_consen   79 WGG   81 (163)
T ss_dssp             BSS
T ss_pred             CCC
Confidence            974

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=99.23  E-value=1.5e-10  Score=113.47  Aligned_cols=134  Identities=25%  Similarity=0.244  Sum_probs=101.1

Q ss_pred             ccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCC-------------------------------
Q 017476          172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSK-------------------------------  220 (371)
Q Consensus       172 Prp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~-------------------------------  220 (371)
                      |-|.-|.|...++...    +..++..++|.-||||.+++..|... ++                               
T Consensus       172 ~ApLketLAaAil~la----gw~~~~pl~DPmCGSGTi~IEAAl~~-~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~  246 (381)
T COG0116         172 PAPLKETLAAAILLLA----GWKPDEPLLDPMCGSGTILIEAALIA-ANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEE  246 (381)
T ss_pred             CCCchHHHHHHHHHHc----CCCCCCccccCCCCccHHHHHHHHhc-cccCCccccccchhhhhhccHHHHHHHHHHHHH
Confidence            3466677777666543    33345689999999999999999763 21                               


Q ss_pred             -c-------EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhccc
Q 017476          221 -G-------SIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKH  292 (371)
Q Consensus       221 -~-------~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~  292 (371)
                       +       .++|+|+++.+++.|+.|+++.|+.+.|+|.++|+...-+.. +.+|+|||||||.-.-     ..+    
T Consensus       247 ~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~-~~~gvvI~NPPYGeRl-----g~~----  316 (381)
T COG0116         247 RARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPL-EEYGVVISNPPYGERL-----GSE----  316 (381)
T ss_pred             HHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCC-CcCCEEEeCCCcchhc-----CCh----
Confidence             1       377999999999999999999999999999999996543322 6899999999996321     000    


Q ss_pred             CccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          293 EPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       293 ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                          +     .--..|+.+.+.+.+.++.-+..++..
T Consensus       317 ----~-----~v~~LY~~fg~~lk~~~~~ws~~v~tt  344 (381)
T COG0116         317 ----A-----LVAKLYREFGRTLKRLLAGWSRYVFTT  344 (381)
T ss_pred             ----h-----hHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence                0     012378889888889998888888877

>PTZ00146 fibrillarin; Provisional

Probab=99.23  E-value=4.9e-10  Score=107.02  Aligned_cols=145  Identities=13%  Similarity=0.094  Sum_probs=93.8

Q ss_pred             HHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcc
Q 017476          178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF  257 (371)
Q Consensus       178 ~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~  257 (371)
                      .|...++.-+ ......++.+|||+|||+|.++..+++..++...|+|||+++.+++...+.+...   .+|.++.+|..
T Consensus       116 Klaa~i~~g~-~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~  191 (293)
T PTZ00146        116 KLAAAIIGGV-ANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDAR  191 (293)
T ss_pred             HHHHHHHCCc-ceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCcc
Confidence            4444444433 2233446679999999999999999998766789999999997664444333221   24889999986


Q ss_pred             ccc--ccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC-----
Q 017476          258 GKL--KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN-----  330 (371)
Q Consensus       258 ~~l--~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~-----  330 (371)
                      .+.  ....+.||+|+++-.                 +|           +..+.++.++.++|||||.+++.+.     
T Consensus       192 ~p~~y~~~~~~vDvV~~Dva-----------------~p-----------dq~~il~~na~r~LKpGG~~vI~ika~~id  243 (293)
T PTZ00146        192 YPQKYRMLVPMVDVIFADVA-----------------QP-----------DQARIVALNAQYFLKNGGHFIISIKANCID  243 (293)
T ss_pred             ChhhhhcccCCCCEEEEeCC-----------------Cc-----------chHHHHHHHHHHhccCCCEEEEEEeccccc
Confidence            542  112357999999532                 11           1233566678899999999999642     


Q ss_pred             -CcCcHHHH---HHHHhccccCCceeEEEEe
Q 017476          331 -GEKQCKFL---KNYLENDSACSFCNVSIVS  357 (371)
Q Consensus       331 -~~~q~~~v---~~~l~~~~~~gf~~v~~~~  357 (371)
                       +....+.+   .+.|++   .+|..++...
T Consensus       244 ~g~~pe~~f~~ev~~L~~---~GF~~~e~v~  271 (293)
T PTZ00146        244 STAKPEVVFASEVQKLKK---EGLKPKEQLT  271 (293)
T ss_pred             cCCCHHHHHHHHHHHHHH---cCCceEEEEe
Confidence             11111211   355654   7898766653

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.23  E-value=1.4e-10  Score=112.98  Aligned_cols=114  Identities=19%  Similarity=0.263  Sum_probs=85.1

Q ss_pred             HHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccc
Q 017476          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG  258 (371)
Q Consensus       179 lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~  258 (371)
                      +...+++.+    +..++.+|||+|||+|.++..+++..+..+.|+++|+++++++.|++|++.++.. ++.++++|..+
T Consensus        68 l~a~ll~~L----~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~-nV~~i~gD~~~  142 (322)
T PRK13943         68 LMALFMEWV----GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-NVIFVCGDGYY  142 (322)
T ss_pred             HHHHHHHhc----CCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCChhh
Confidence            444444444    2335679999999999999999997633468999999999999999999999985 49999999876


Q ss_pred             ccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC
Q 017476          259 KLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN  330 (371)
Q Consensus       259 ~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~  330 (371)
                      .... .+.||+|+++..                             ..   .+...+.+.|+|||.+++..+
T Consensus       143 ~~~~-~~~fD~Ii~~~g-----------------------------~~---~ip~~~~~~LkpgG~Lvv~~~  181 (322)
T PRK13943        143 GVPE-FAPYDVIFVTVG-----------------------------VD---EVPETWFTQLKEGGRVIVPIN  181 (322)
T ss_pred             cccc-cCCccEEEECCc-----------------------------hH---HhHHHHHHhcCCCCEEEEEeC
Confidence            5443 257999998411                             00   122234578999999998763

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.23  E-value=1.5e-10  Score=110.39  Aligned_cols=108  Identities=22%  Similarity=0.288  Sum_probs=81.0

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCC--CcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGS--KGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~--~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      ..+|||+|||+|.++..+++.+..  ...|+|+|+|+.+++.|+++.      .++.+..+|..+ ++..++.||+|+++
T Consensus        86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~-lp~~~~sfD~I~~~  158 (272)
T PRK11088         86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHR-LPFADQSLDAIIRI  158 (272)
T ss_pred             CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeeccc-CCCcCCceeEEEEe
Confidence            468999999999999999887522  237999999999999998752      248899999865 33335789999983


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHh
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLE  343 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~  343 (371)
                        +                .|               ..++++.+.|||||++++...+.....+++..+.
T Consensus       159 --~----------------~~---------------~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~~~  195 (272)
T PRK11088        159 --Y----------------AP---------------CKAEELARVVKPGGIVITVTPGPRHLFELKGLIY  195 (272)
T ss_pred             --c----------------CC---------------CCHHHHHhhccCCCEEEEEeCCCcchHHHHHHhc
Confidence              1                01               1234567899999999999877666666666653

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.23  E-value=1.5e-10  Score=123.95  Aligned_cols=103  Identities=22%  Similarity=0.237  Sum_probs=80.3

Q ss_pred             ccchHHHHHHHHHHHhhhcCCC-CCCCeEEEECCcccHHHHHHHHHhC--------------------------------
Q 017476          172 PRPETELMVDLVSDVLVRDNDG-LRDGFWVDLGTGSGAIAIGIARVLG--------------------------------  218 (371)
Q Consensus       172 Prp~te~lv~~~~~~~~~~~~~-~~~~~VLDlG~GsG~~al~la~~~~--------------------------------  218 (371)
                      |-|..|.++..++...    .. ..+..++|++||||.+.+..|....                                
T Consensus       170 ~Apl~etlAaa~l~~a----~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~  245 (702)
T PRK11783        170 EAPLKENLAAAILLRS----GWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQ  245 (702)
T ss_pred             CCCCcHHHHHHHHHHc----CCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHH
Confidence            4466677777776543    22 2356899999999999999876310                                


Q ss_pred             ---------CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccC-CCceeEEEEcCCCCC
Q 017476          219 ---------SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV-EGKLSGVVSNPPYIP  278 (371)
Q Consensus       219 ---------~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~-~~~fDlIvsNPPYi~  278 (371)
                               ...+++|+|+++.+++.|++|+..+|+.+.+++.++|+.+..... .++||+||+||||..
T Consensus       246 ~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~  315 (702)
T PRK11783        246 ERARAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGE  315 (702)
T ss_pred             HHHhhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcC
Confidence                     123699999999999999999999999888999999997643221 257999999999975

>TIGR03438 probable methyltransferase

Probab=99.23  E-value=2.2e-10  Score=110.82  Aligned_cols=136  Identities=15%  Similarity=0.104  Sum_probs=91.1

Q ss_pred             cchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q 017476          173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIR  252 (371)
Q Consensus       173 rp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~  252 (371)
                      |.|.+.+.+.+.+.. ...  .++.+|||+|||+|..+..+++.+....+++|+|+|++||+.|++++......-++.++
T Consensus        44 r~E~~il~~~~~~ia-~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i  120 (301)
T TIGR03438        44 RTEAAILERHADEIA-AAT--GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGI  120 (301)
T ss_pred             HHHHHHHHHHHHHHH-Hhh--CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEE
Confidence            566666666555443 211  23568999999999999999988622579999999999999999998764322347889


Q ss_pred             EcCcccccccCCCce---e--EEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEE
Q 017476          253 QGSWFGKLKDVEGKL---S--GVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF  327 (371)
Q Consensus       253 ~gD~~~~l~~~~~~f---D--lIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvl  327 (371)
                      ++|+.+.+... ..+   +  ++++.-.      +..+.                  .+....+++.+.+.|+|||.+++
T Consensus       121 ~gD~~~~~~~~-~~~~~~~~~~~~~gs~------~~~~~------------------~~e~~~~L~~i~~~L~pgG~~li  175 (301)
T TIGR03438       121 CADFTQPLALP-PEPAAGRRLGFFPGST------IGNFT------------------PEEAVAFLRRIRQLLGPGGGLLI  175 (301)
T ss_pred             EEcccchhhhh-cccccCCeEEEEeccc------ccCCC------------------HHHHHHHHHHHHHhcCCCCEEEE
Confidence            99997653221 222   2  3332111      11111                  23345789999999999999999


Q ss_pred             EECCcCcHH
Q 017476          328 ETNGEKQCK  336 (371)
Q Consensus       328 e~~~~~q~~  336 (371)
                      -++...+.+
T Consensus       176 g~d~~~~~~  184 (301)
T TIGR03438       176 GVDLVKDPA  184 (301)
T ss_pred             eccCCCCHH
Confidence            775444433

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=99.22  E-value=1.3e-10  Score=114.76  Aligned_cols=108  Identities=23%  Similarity=0.302  Sum_probs=77.1

Q ss_pred             ceeeEeeCCcccc--cchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 017476          160 DLVLSVEEGVFIP--RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA  237 (371)
Q Consensus       160 ~~~~~v~~~vliP--rp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~  237 (371)
                      ++.|.++++.|+.  ...++.|++.+.+++ .   .. +..+||+.||+|.+++.+|+.+   .+|+|||+++.+++.|+
T Consensus       164 ~~~~~~~~~sFfQvN~~~~~~l~~~~~~~l-~---~~-~~~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~  235 (352)
T PF05958_consen  164 GLSFRISPGSFFQVNPEQNEKLYEQALEWL-D---LS-KGDVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDAR  235 (352)
T ss_dssp             TEEEEEETTS---SBHHHHHHHHHHHHHHC-T---T--TTEEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHH
T ss_pred             ceEEEECCCcCccCcHHHHHHHHHHHHHHh-h---cC-CCcEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHH
Confidence            4678999999984  477899999999988 2   22 2379999999999999999853   69999999999999999


Q ss_pred             HHHHHcCCCCcEEEEEcCcccccc------------c---CCCceeEEEEcCCC
Q 017476          238 FNAQRYGLQDIIEIRQGSWFGKLK------------D---VEGKLSGVVSNPPY  276 (371)
Q Consensus       238 ~n~~~~gl~~~v~~~~gD~~~~l~------------~---~~~~fDlIvsNPPY  276 (371)
                      +|++.+++.+ ++|+.++..+...            .   ....+|+|+.|||=
T Consensus       236 ~Na~~N~i~n-~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR  288 (352)
T PF05958_consen  236 ENAKLNGIDN-VEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPR  288 (352)
T ss_dssp             HHHHHTT--S-EEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---T
T ss_pred             HHHHHcCCCc-ceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCC
Confidence            9999999976 9999887643211            0   01368999999993

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=99.21  E-value=1.2e-10  Score=116.11  Aligned_cols=101  Identities=21%  Similarity=0.181  Sum_probs=82.3

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCC
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP  275 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPP  275 (371)
                      ..+|||++||+|.+++.++.+. +..+|+++|+++.+++.+++|++.+++.+ ++++++|+.+.+.. .++||+|+.|||
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~-~~~~V~a~Din~~Av~~a~~N~~~N~~~~-~~v~~~Da~~~l~~-~~~fD~V~lDP~  134 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALET-GVEKVTLNDINPDAVELIKKNLELNGLEN-EKVFNKDANALLHE-ERKFDVVDIDPF  134 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEhhhHHHHHhh-cCCCCEEEECCC
Confidence            3589999999999999999875 44589999999999999999999999875 78999998665432 357999999986


Q ss_pred             CCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       276 Yi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                       . ..                            ..+++.+...+++||++++..
T Consensus       135 -G-s~----------------------------~~~l~~al~~~~~~gilyvSA  158 (382)
T PRK04338        135 -G-SP----------------------------APFLDSAIRSVKRGGLLCVTA  158 (382)
T ss_pred             -C-Cc----------------------------HHHHHHHHHHhcCCCEEEEEe
Confidence             1 11                            145666667889999999964

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.21  E-value=1.4e-10  Score=90.89  Aligned_cols=103  Identities=25%  Similarity=0.417  Sum_probs=81.3

Q ss_pred             eEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCC
Q 017476          198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYI  277 (371)
Q Consensus       198 ~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi  277 (371)
                      +|+|+|||+|.++..+++ . +..+++++|+++.++..++++....+ ..+++++.+|+.+......++||+|++|+++.
T Consensus         1 ~ildig~G~G~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~   77 (107)
T cd02440           1 RVLDLGCGTGALALALAS-G-PGARVTGVDISPVALELARKAAAALL-ADNVEVLKGDAEELPPEADESFDVIISDPPLH   77 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-C-CCCEEEEEeCCHHHHHHHHHHHhccc-ccceEEEEcChhhhccccCCceEEEEEcccee
Confidence            489999999999999988 3 57899999999999999986544443 34599999999876542346899999999875


Q ss_pred             CCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476          278 PSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE  328 (371)
Q Consensus       278 ~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle  328 (371)
                      ..                         ......+++.+.+.|++||.+++.
T Consensus        78 ~~-------------------------~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          78 HL-------------------------VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             eh-------------------------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence            31                         123447888888999999999876

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.21  E-value=4.6e-10  Score=103.58  Aligned_cols=88  Identities=27%  Similarity=0.341  Sum_probs=67.7

Q ss_pred             HHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcc
Q 017476          178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF  257 (371)
Q Consensus       178 ~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~  257 (371)
                      ...+.+..++ ......++.+|||+|||+|.++..+++.   +..|+|+|+|+.+++.|+++....+..+++.+..+|+ 
T Consensus        47 ~~~~~~~~~l-~~~~~~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~-  121 (230)
T PRK07580         47 RMRDTVLSWL-PADGDLTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDL-  121 (230)
T ss_pred             HHHHHHHHHH-HhcCCCCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc-
Confidence            3444555554 2211234679999999999999999885   3579999999999999999998888766799999994 


Q ss_pred             cccccCCCceeEEEEc
Q 017476          258 GKLKDVEGKLSGVVSN  273 (371)
Q Consensus       258 ~~l~~~~~~fDlIvsN  273 (371)
                      +.   ..+.||+|+++
T Consensus       122 ~~---~~~~fD~v~~~  134 (230)
T PRK07580        122 ES---LLGRFDTVVCL  134 (230)
T ss_pred             hh---ccCCcCEEEEc
Confidence            32   23689999984

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.20  E-value=4.9e-10  Score=103.93  Aligned_cols=119  Identities=24%  Similarity=0.362  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcC
Q 017476          176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGS  255 (371)
Q Consensus       176 te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD  255 (371)
                      +...++++....    ...++.+|||+|||+|.++..+++.   +.+++++|+++.+++.|++|+...+.  .+.++.+|
T Consensus        33 ~~~~~~~l~~~~----~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~  103 (233)
T PRK05134         33 NPLRLNYIREHA----GGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL--KIDYRQTT  103 (233)
T ss_pred             hHHHHHHHHHhc----cCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecC
Confidence            334445554443    2235679999999999999988874   46899999999999999999887765  37888888


Q ss_pred             cccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          256 WFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       256 ~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      +.+......++||+|+++-.+              .|.+            ....+++.+.+.|+|||.+++..
T Consensus       104 ~~~~~~~~~~~fD~Ii~~~~l--------------~~~~------------~~~~~l~~~~~~L~~gG~l~v~~  151 (233)
T PRK05134        104 AEELAAEHPGQFDVVTCMEML--------------EHVP------------DPASFVRACAKLVKPGGLVFFST  151 (233)
T ss_pred             HHHhhhhcCCCccEEEEhhHh--------------hccC------------CHHHHHHHHHHHcCCCcEEEEEe
Confidence            865432234789999984221              1111            12367888899999999999875

>PLN02366 spermidine synthase

Probab=99.19  E-value=1.3e-09  Score=105.66  Aligned_cols=199  Identities=16%  Similarity=0.191  Sum_probs=118.7

Q ss_pred             CCceeeEee-cccccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEE
Q 017476          146 RKPFQYLVG-CEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSII  224 (371)
Q Consensus       146 ~~P~~yi~g-~~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~  224 (371)
                      .-|.|.|.- +..-++..+.++-.+-+-..+ |.....++..+ .......+++||++|||.|.++..+++. .+..+|+
T Consensus        43 ~s~yQ~i~v~~~~~~g~~L~lDg~~q~~~~d-e~~Y~e~l~h~-~l~~~~~pkrVLiIGgG~G~~~rellk~-~~v~~V~  119 (308)
T PLN02366         43 KSDFQDVLVFESATYGKVLVLDGVIQLTERD-ECAYQEMITHL-PLCSIPNPKKVLVVGGGDGGVLREIARH-SSVEQID  119 (308)
T ss_pred             cCCCeeEEEEEcCCCceEEEECCEeeecCcc-HHHHHHHHHHH-HHhhCCCCCeEEEEcCCccHHHHHHHhC-CCCCeEE
Confidence            356666533 112234555555543333333 22223233222 1111234679999999999999999885 3456899


Q ss_pred             EEeCCHHHHHHHHHHHHHc--CC-CCcEEEEEcCcccccccC-CCceeEEEEcCCCCCCCCcccchhhhcccCccccccC
Q 017476          225 AVDLNPLAAAVAAFNAQRY--GL-QDIIEIRQGSWFGKLKDV-EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDG  300 (371)
Q Consensus       225 gvDis~~al~~A~~n~~~~--gl-~~~v~~~~gD~~~~l~~~-~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~g  300 (371)
                      .||+++.+++.|++.+...  ++ .+|++++.+|..+.+... .++||+|+++.+-..              .|..    
T Consensus       120 ~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~D~~dp~--------------~~~~----  181 (308)
T PLN02366        120 ICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIVDSSDPV--------------GPAQ----  181 (308)
T ss_pred             EEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEEcCCCCC--------------Cchh----
Confidence            9999999999999987543  23 348999999987765543 468999999643110              0000    


Q ss_pred             CCCcHHHHHHHHHHHhcccccCcEEEEEECC-cCcHHHHHHHHhccccCCc-eeEEEE----ecC-CCCceEEEEEe
Q 017476          301 GVDGLDYLLHLCNGTASMLKPGGFFAFETNG-EKQCKFLKNYLENDSACSF-CNVSIV----SDF-AGIQRFVTGFR  370 (371)
Q Consensus       301 g~dGl~~~~~il~~a~~~LkpgG~lvle~~~-~~q~~~v~~~l~~~~~~gf-~~v~~~----~Dl-~g~~R~~~a~~  370 (371)
                          --....+++.+.+.|+|||+++..... +.+.+.+..+++.. ..-| ..+..+    +-+ .|..-|++|-+
T Consensus       182 ----~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl-~~~F~~~v~~~~~~vPsy~~g~w~f~~as~  253 (308)
T PLN02366        182 ----ELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAIC-RETFKGSVNYAWTTVPTYPSGVIGFVLCSK  253 (308)
T ss_pred             ----hhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHH-HHHCCCceeEEEecCCCcCCCceEEEEEEC
Confidence                112347888899999999999886532 23344444444432 1235 344332    123 25566666643

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.19  E-value=1e-09  Score=100.88  Aligned_cols=105  Identities=24%  Similarity=0.258  Sum_probs=81.1

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      .+.+|||+|||+|.++..+++.   ..+++++|+++.+++.+++|+...+.. ++++..+|+.+......++||+|+++-
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~i~~~~  120 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEKGAKSFDVVTCME  120 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcCCCCCccEEEehh
Confidence            4679999999999999988874   357999999999999999999887764 488999987654332236899999842


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      ..              .|.            .....+++.+.+.|++||.+++..
T Consensus       121 ~l--------------~~~------------~~~~~~l~~~~~~L~~gG~l~i~~  149 (224)
T TIGR01983       121 VL--------------EHV------------PDPQAFIRACAQLLKPGGILFFST  149 (224)
T ss_pred             HH--------------HhC------------CCHHHHHHHHHHhcCCCcEEEEEe
Confidence            21              111            123468888899999999998865

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.19  E-value=2.4e-10  Score=105.58  Aligned_cols=103  Identities=17%  Similarity=0.116  Sum_probs=74.9

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC--------------CCcEEEEEcCccccc
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGL--------------QDIIEIRQGSWFGKL  260 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl--------------~~~v~~~~gD~~~~l  260 (371)
                      ++.+|||+|||.|..++.||+.   +.+|+|||+|+.|++.+.+   .+++              ..+|++.++|+++..
T Consensus        37 ~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~  110 (218)
T PRK13255         37 AGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT  110 (218)
T ss_pred             CCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCC
Confidence            3569999999999999999984   6899999999999998643   2222              246899999998764


Q ss_pred             ccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEE
Q 017476          261 KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF  327 (371)
Q Consensus       261 ~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvl  327 (371)
                      ....+.||+|+-      ...+..++++                  .-..+++.+.+.|+|||++++
T Consensus       111 ~~~~~~fd~v~D------~~~~~~l~~~------------------~R~~~~~~l~~lL~pgG~~~l  153 (218)
T PRK13255        111 AADLADVDAVYD------RAALIALPEE------------------MRERYVQQLAALLPAGCRGLL  153 (218)
T ss_pred             cccCCCeeEEEe------hHhHhhCCHH------------------HHHHHHHHHHHHcCCCCeEEE
Confidence            433367999884      1111222222                  223678888999999997555

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=99.17  E-value=3e-10  Score=103.20  Aligned_cols=141  Identities=23%  Similarity=0.335  Sum_probs=101.7

Q ss_pred             eEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccC--CCceeEEEEcCC
Q 017476          198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV--EGKLSGVVSNPP  275 (371)
Q Consensus       198 ~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~--~~~fDlIvsNPP  275 (371)
                      .+||+|||.|.+.+.+|... |+..++|+|++...+..|.+.+...++.| +.++++|+...+...  ++++|.|..|-|
T Consensus        20 l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l~N-v~~~~~da~~~l~~~~~~~~v~~i~i~FP   97 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGLKN-VRFLRGDARELLRRLFPPGSVDRIYINFP   97 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTTSS-EEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred             eEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhcccc-eEEEEccHHHHHhhcccCCchheEEEeCC
Confidence            89999999999999999985 99999999999999999999999999976 999999987644321  478999999866


Q ss_pred             CCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEE
Q 017476          276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSI  355 (371)
Q Consensus       276 Yi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~  355 (371)
                      =.+...         +|.-+. +.        -..+++...+.|+|||.+.+-++.....+.+.+.+.+. ..+|..+..
T Consensus        98 DPWpK~---------rH~krR-l~--------~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~-~~~f~~~~~  158 (195)
T PF02390_consen   98 DPWPKK---------RHHKRR-LV--------NPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEES-HPGFENIEE  158 (195)
T ss_dssp             ----SG---------GGGGGS-TT--------SHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHH-STTEEEE-T
T ss_pred             CCCccc---------chhhhh-cC--------CchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhc-CcCeEEccc
Confidence            432221         111111 11        12688888999999999999997777778888888762 156766543


Q ss_pred             EecC
Q 017476          356 VSDF  359 (371)
Q Consensus       356 ~~Dl  359 (371)
                      ..++
T Consensus       159 ~~~~  162 (195)
T PF02390_consen  159 SDDL  162 (195)
T ss_dssp             ESSG
T ss_pred             Cccc
Confidence            3343

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=99.17  E-value=5.7e-10  Score=113.73  Aligned_cols=145  Identities=15%  Similarity=0.170  Sum_probs=104.3

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      .++.+|||+|+|.|.-+..+|..++..+.|+++|+++.-++.+++|+++.|+.+ +.+...|.........+.||.|+.+
T Consensus       112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~n-v~v~~~D~~~~~~~~~~~fD~ILvD  190 (470)
T PRK11933        112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSN-VALTHFDGRVFGAALPETFDAILLD  190 (470)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCchhhhhhhchhhcCeEEEc
Confidence            356799999999999999999988667899999999999999999999999975 8888888754322334679999999


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHH-HHHHHHHHHhcccccCcEEEEEECC---cCcHHHHHHHHhc
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLD-YLLHLCNGTASMLKPGGFFAFETNG---EKQCKFLKNYLEN  344 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~-~~~~il~~a~~~LkpgG~lvle~~~---~~q~~~v~~~l~~  344 (371)
                      +|+...+.+..-+.....+.+...     .-+. .=++|+..+.++|||||+|++.+-.   ....+.|..++++
T Consensus       191 aPCSG~G~~rk~p~~~~~~s~~~v-----~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~  260 (470)
T PRK11933        191 APCSGEGTVRKDPDALKNWSPESN-----LEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKET  260 (470)
T ss_pred             CCCCCCcccccCHHHhhhCCHHHH-----HHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            999876655432211111211110     0011 2257999999999999999998743   2233344555554

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=99.16  E-value=2.1e-10  Score=110.54  Aligned_cols=92  Identities=20%  Similarity=0.266  Sum_probs=73.7

Q ss_pred             HHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcc
Q 017476          178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF  257 (371)
Q Consensus       178 ~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~  257 (371)
                      .+++.+++..    ...++.+|||+|||+|.++..+++.   ..+|+|+|+|+.+++.+++|+..++..++++++++|+.
T Consensus        23 ~i~~~Iv~~~----~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal   95 (294)
T PTZ00338         23 LVLDKIVEKA----AIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDAL   95 (294)
T ss_pred             HHHHHHHHhc----CCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHh
Confidence            3445555444    2335679999999999999999885   36899999999999999999988776567999999997


Q ss_pred             cccccCCCceeEEEEcCCCCCC
Q 017476          258 GKLKDVEGKLSGVVSNPPYIPS  279 (371)
Q Consensus       258 ~~l~~~~~~fDlIvsNPPYi~~  279 (371)
                      +..   ...||.||+|+||.-.
T Consensus        96 ~~~---~~~~d~VvaNlPY~Is  114 (294)
T PTZ00338         96 KTE---FPYFDVCVANVPYQIS  114 (294)
T ss_pred             hhc---ccccCEEEecCCcccC
Confidence            642   2478999999999643

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.15  E-value=4.5e-10  Score=97.17  Aligned_cols=97  Identities=18%  Similarity=0.245  Sum_probs=69.0

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      .++.+|||+|||+|.++..+++.   +.+++|+|+++.+++.       .    .+.....+.... ....++||+|+|+
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~-------~----~~~~~~~~~~~~-~~~~~~fD~i~~~   85 (161)
T PF13489_consen   21 KPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK-------R----NVVFDNFDAQDP-PFPDGSFDLIICN   85 (161)
T ss_dssp             TTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH-------T----TSEEEEEECHTH-HCHSSSEEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh-------h----hhhhhhhhhhhh-hccccchhhHhhH
Confidence            35679999999999999999764   3499999999999887       1    122222211111 1124799999994


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG  331 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~  331 (371)
                                    .+..|-            .....+++.+.++|||||++++....
T Consensus        86 --------------~~l~~~------------~d~~~~l~~l~~~LkpgG~l~~~~~~  117 (161)
T PF13489_consen   86 --------------DVLEHL------------PDPEEFLKELSRLLKPGGYLVISDPN  117 (161)
T ss_dssp             --------------SSGGGS------------SHHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred             --------------HHHhhc------------ccHHHHHHHHHHhcCCCCEEEEEEcC
Confidence                          233332            23558899999999999999998854

...

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=9.3e-11  Score=99.59  Aligned_cols=83  Identities=24%  Similarity=0.400  Sum_probs=70.6

Q ss_pred             CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEE
Q 017476          192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV  271 (371)
Q Consensus       192 ~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIv  271 (371)
                      +...+++++|+|||.|.+.++.+. + ....|+|+||+++|++.+.+|+....++  +.+++.|..+.... .+.||.+|
T Consensus        45 gdiEgkkl~DLgcgcGmLs~a~sm-~-~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdildle~~-~g~fDtav  119 (185)
T KOG3420|consen   45 GDIEGKKLKDLGCGCGMLSIAFSM-P-KNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILDLELK-GGIFDTAV  119 (185)
T ss_pred             ccccCcchhhhcCchhhhHHHhhc-C-CCceEEeeecCHHHHHHHhhchHHhhhh--hheeeeeccchhcc-CCeEeeEE
Confidence            456788999999999999977665 3 5668999999999999999999988776  79999999875443 48999999


Q ss_pred             EcCCCCCC
Q 017476          272 SNPPYIPS  279 (371)
Q Consensus       272 sNPPYi~~  279 (371)
                      .||||...
T Consensus       120 iNppFGTk  127 (185)
T KOG3420|consen  120 INPPFGTK  127 (185)
T ss_pred             ecCCCCcc
Confidence            99999754

>PRK05785 hypothetical protein; Provisional

Probab=99.12  E-value=1.7e-09  Score=100.49  Aligned_cols=133  Identities=14%  Similarity=0.100  Sum_probs=90.9

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCC
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP  275 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPP  275 (371)
                      +.+|||+|||+|.++..+++..  +.+|+|+|+|++|++.|+++         ..++++|+.+ ++..+++||+|+++--
T Consensus        52 ~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~-lp~~d~sfD~v~~~~~  119 (226)
T PRK05785         52 PKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVA---------DDKVVGSFEA-LPFRDKSFDVVMSSFA  119 (226)
T ss_pred             CCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc---------cceEEechhh-CCCCCCCEEEEEecCh
Confidence            5699999999999999999874  46999999999999999864         1356788754 4444689999999532


Q ss_pred             CCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC------------------------
Q 017476          276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG------------------------  331 (371)
Q Consensus       276 Yi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~------------------------  331 (371)
                      .              +|            .......++++.+.|||. ..++|...                        
T Consensus       120 l--------------~~------------~~d~~~~l~e~~RvLkp~-~~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~  172 (226)
T PRK05785        120 L--------------HA------------SDNIEKVIAEFTRVSRKQ-VGFIAMGKPDNVIKRKYLSFYLRYIMPYIACL  172 (226)
T ss_pred             h--------------hc------------cCCHHHHHHHHHHHhcCc-eEEEEeCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            1              11            112346777888888883 33455421                        


Q ss_pred             -----------------cCcHHHHHHHHhccccCCceeEEEEecCCCCceEEEEEeC
Q 017476          332 -----------------EKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFRQ  371 (371)
Q Consensus       332 -----------------~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~~~  371 (371)
                                       ....+++.+++++   . +..++...-..|+--+.+|+|+
T Consensus       173 ~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~---~-~~~~~~~~~~~G~~~~~~~~k~  225 (226)
T PRK05785        173 AGAKCRDYKYIYYIYERLPTNSFHREIFEK---Y-ADIKVYEERGLGLVYFVVGSSR  225 (226)
T ss_pred             hcCChHHHHHHHHHHHHCCCHHHHHHHHHH---H-hCceEEEEccccEEEEEEEeeC
Confidence                             1123445555554   2 3457777777777777777764

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.10  E-value=6.8e-10  Score=113.85  Aligned_cols=104  Identities=19%  Similarity=0.202  Sum_probs=78.5

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccc-cccCCCceeEEEEc
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK-LKDVEGKLSGVVSN  273 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~-l~~~~~~fDlIvsN  273 (371)
                      ++.+|||+|||+|.++..+++..   .+|+|+|+++.+++.+++.   ++...+++++++|+.+. ++...++||+|++|
T Consensus        37 ~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~  110 (475)
T PLN02336         37 EGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESI---NGHYKNVKFMCADVTSPDLNISDGSVDLIFSN  110 (475)
T ss_pred             CCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHH---hccCCceEEEEecccccccCCCCCCEEEEehh
Confidence            45699999999999999999863   5899999999999876542   23334699999998642 22234789999998


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE  328 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle  328 (371)
                      .++...      .                  -+....+++.+.+.|||||++++.
T Consensus       111 ~~l~~l------~------------------~~~~~~~l~~~~r~Lk~gG~l~~~  141 (475)
T PLN02336        111 WLLMYL------S------------------DKEVENLAERMVKWLKVGGYIFFR  141 (475)
T ss_pred             hhHHhC------C------------------HHHHHHHHHHHHHhcCCCeEEEEE
Confidence            764311      1                  122457889999999999999885

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.10  E-value=8.8e-10  Score=99.86  Aligned_cols=132  Identities=21%  Similarity=0.255  Sum_probs=93.1

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      .+.-|||||||||.-+..+..   ++...+|||+|+.||++|.+.  ..  +  -.++.+|+-+.++...+.||.+||  
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~~---~Gh~wiGvDiSpsML~~a~~~--e~--e--gdlil~DMG~GlpfrpGtFDg~IS--  118 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLSD---SGHQWIGVDISPSMLEQAVER--EL--E--GDLILCDMGEGLPFRPGTFDGVIS--  118 (270)
T ss_pred             CCcEEEEeccCCCcchheecc---CCceEEeecCCHHHHHHHHHh--hh--h--cCeeeeecCCCCCCCCCccceEEE--
Confidence            467899999999999888766   457899999999999999872  22  1  368889999988887899999988  


Q ss_pred             CCCCCCCcccch-hhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCcee
Q 017476          275 PYIPSDDISGLQ-VEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCN  352 (371)
Q Consensus       275 PYi~~~~~~~l~-~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~  352 (371)
                        |.  .+.-+. ..-..|.|+          .-+..|+...+..|++|+..++..- ....+++..++.+...+||..
T Consensus       119 --IS--AvQWLcnA~~s~~~P~----------~Rl~~FF~tLy~~l~rg~raV~QfY-pen~~q~d~i~~~a~~aGF~G  182 (270)
T KOG1541|consen  119 --IS--AVQWLCNADKSLHVPK----------KRLLRFFGTLYSCLKRGARAVLQFY-PENEAQIDMIMQQAMKAGFGG  182 (270)
T ss_pred             --ee--eeeeecccCccccChH----------HHHHHHhhhhhhhhccCceeEEEec-ccchHHHHHHHHHHHhhccCC
Confidence              11  111111 111234443          4455788889999999999999883 334444444444433477754

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=99.10  E-value=5.8e-10  Score=105.62  Aligned_cols=76  Identities=25%  Similarity=0.329  Sum_probs=63.9

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|.++..+++.   ..+|+|+|+++.+++.+++++..   .++++++++|+.+. ..  ..||.|++||
T Consensus        29 ~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~~~-~~--~~~d~Vv~Nl   99 (258)
T PRK14896         29 DGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDALKV-DL--PEFNKVVSNL   99 (258)
T ss_pred             CcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEeccccC-Cc--hhceEEEEcC
Confidence            4679999999999999999996   35899999999999999998754   24699999999763 21  3589999999


Q ss_pred             CCCCC
Q 017476          275 PYIPS  279 (371)
Q Consensus       275 PYi~~  279 (371)
                      ||...
T Consensus       100 Py~i~  104 (258)
T PRK14896        100 PYQIS  104 (258)
T ss_pred             CcccC
Confidence            99743

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=99.09  E-value=3.7e-10  Score=107.77  Aligned_cols=88  Identities=22%  Similarity=0.229  Sum_probs=66.6

Q ss_pred             HHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccc
Q 017476          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG  258 (371)
Q Consensus       179 lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~  258 (371)
                      +++.+++.+    ...++.+|||+|||+|.++..+++..   .+|+|+|+|+.+++.+++|+..    ++++++++|+.+
T Consensus        30 i~~~i~~~l----~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~   98 (272)
T PRK00274         30 ILDKIVDAA----GPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALK   98 (272)
T ss_pred             HHHHHHHhc----CCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhc
Confidence            344444444    22346799999999999999999973   3899999999999999987642    469999999976


Q ss_pred             ccccCCCceeEEEEcCCCCC
Q 017476          259 KLKDVEGKLSGVVSNPPYIP  278 (371)
Q Consensus       259 ~l~~~~~~fDlIvsNPPYi~  278 (371)
                      .... .-.+|.||+||||.-
T Consensus        99 ~~~~-~~~~~~vv~NlPY~i  117 (272)
T PRK00274         99 VDLS-ELQPLKVVANLPYNI  117 (272)
T ss_pred             CCHH-HcCcceEEEeCCccc
Confidence            4211 111599999999964

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.08  E-value=2.2e-09  Score=102.27  Aligned_cols=133  Identities=24%  Similarity=0.253  Sum_probs=91.2

Q ss_pred             CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEE
Q 017476          192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV  271 (371)
Q Consensus       192 ~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIv  271 (371)
                      ....+++|||+|||+|..+..++.+  ....|+|+|.+.......+--.+..|....+..+. ...+.++. .+.||+|+
T Consensus       112 ~~L~gk~VLDIGC~nGY~~frM~~~--GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lp-lgvE~Lp~-~~~FDtVF  187 (315)
T PF08003_consen  112 PDLKGKRVLDIGCNNGYYSFRMLGR--GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELP-LGVEDLPN-LGAFDTVF  187 (315)
T ss_pred             CCcCCCEEEEecCCCcHHHHHHhhc--CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcC-cchhhccc-cCCcCEEE
Confidence            3457889999999999999999986  44689999999987665443333334333333432 23344554 57899999


Q ss_pred             EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC---C-----------------
Q 017476          272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN---G-----------------  331 (371)
Q Consensus       272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~---~-----------------  331 (371)
                      |              -.|..|..            ..-..+.+..+.|++||.+++|+.   |                 
T Consensus       188 ~--------------MGVLYHrr------------~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~n  241 (315)
T PF08003_consen  188 S--------------MGVLYHRR------------SPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRN  241 (315)
T ss_pred             E--------------eeehhccC------------CHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCc
Confidence            9              23444421            122566777899999999999863   1                 


Q ss_pred             ---cCcHHHHHHHHhccccCCceeEEEEe
Q 017476          332 ---EKQCKFLKNYLENDSACSFCNVSIVS  357 (371)
Q Consensus       332 ---~~q~~~v~~~l~~~~~~gf~~v~~~~  357 (371)
                         .-....+..++++   .||.+|++..
T Consensus       242 v~FiPs~~~L~~wl~r---~gF~~v~~v~  267 (315)
T PF08003_consen  242 VWFIPSVAALKNWLER---AGFKDVRCVD  267 (315)
T ss_pred             eEEeCCHHHHHHHHHH---cCCceEEEec
Confidence               1135677888885   7899998764

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=99.05  E-value=1.7e-09  Score=107.42  Aligned_cols=102  Identities=19%  Similarity=0.161  Sum_probs=84.4

Q ss_pred             CeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCC
Q 017476          197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPY  276 (371)
Q Consensus       197 ~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPY  276 (371)
                      .+|||+.||+|..++.++.+.....+|+++|+|+++++.+++|++.+++. +++++++|....+.....+||+|..||+.
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdlDPfG  124 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDIDPFG  124 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEeCCCC
Confidence            58999999999999999997423368999999999999999999999886 48999999987665434679999999943


Q ss_pred             CCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          277 IPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       277 i~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      .+.                              .+++.+.+.+++||++++..
T Consensus       125 s~~------------------------------~fld~al~~~~~~glL~vTa  147 (374)
T TIGR00308       125 TPA------------------------------PFVDSAIQASAERGLLLVTA  147 (374)
T ss_pred             CcH------------------------------HHHHHHHHhcccCCEEEEEe
Confidence            110                              46777788999999999973

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=99.04  E-value=3.6e-10  Score=103.13  Aligned_cols=140  Identities=24%  Similarity=0.250  Sum_probs=103.6

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEcCcccccccC-CCceeEEE
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ-DIIEIRQGSWFGKLKDV-EGKLSGVV  271 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~-~~v~~~~gD~~~~l~~~-~~~fDlIv  271 (371)
                      ..+.+|||.|+|-|..++..+++  ....|+.||.++..+++|.-|--..++. ..++++.||..+.++.+ +.+||+||
T Consensus       133 ~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi  210 (287)
T COG2521         133 KRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII  210 (287)
T ss_pred             ccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence            35789999999999999999885  3349999999999999999885444442 25899999998877665 45799999


Q ss_pred             EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC-------CcCcHHHHHHHHhc
Q 017476          272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN-------GEKQCKFLKNYLEN  344 (371)
Q Consensus       272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~-------~~~q~~~v~~~l~~  344 (371)
                      -+||=....-      +                 -.-.+|.++.++.|++||.++-.++       |.+-...|.+.|++
T Consensus       211 HDPPRfS~Ag------e-----------------LYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~  267 (287)
T COG2521         211 HDPPRFSLAG------E-----------------LYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRR  267 (287)
T ss_pred             eCCCccchhh------h-----------------HhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHh
Confidence            9999542111      0                 1112455566699999999988775       33345667777775


Q ss_pred             cccCCceeEEEEecCCC
Q 017476          345 DSACSFCNVSIVSDFAG  361 (371)
Q Consensus       345 ~~~~gf~~v~~~~Dl~g  361 (371)
                         .||..+......-|
T Consensus       268 ---vGF~~v~~~~~~~g  281 (287)
T COG2521         268 ---VGFEVVKKVREALG  281 (287)
T ss_pred             ---cCceeeeeehhccc
Confidence               78988877765444

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=99.03  E-value=2.1e-09  Score=98.73  Aligned_cols=129  Identities=22%  Similarity=0.339  Sum_probs=88.3

Q ss_pred             CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC---------------------------
Q 017476          192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG---------------------------  244 (371)
Q Consensus       192 ~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~g---------------------------  244 (371)
                      +...+..+||+||-+|.+++.+|+.| ....|.|+||++..+..|++|++...                           
T Consensus        55 ~~f~~~~~LDIGCNsG~lt~~iak~F-~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a  133 (288)
T KOG2899|consen   55 DWFEPKQALDIGCNSGFLTLSIAKDF-GPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEA  133 (288)
T ss_pred             cccCcceeEeccCCcchhHHHHHHhh-ccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccc
Confidence            34467789999999999999999998 45689999999999999999986431                           


Q ss_pred             -------CCCcEEEEE-------cCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHH
Q 017476          245 -------LQDIIEIRQ-------GSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLH  310 (371)
Q Consensus       245 -------l~~~v~~~~-------gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~  310 (371)
                             +++++.|..       .|+.+   ....+||+|+|            |  .+-.|   .-|--|++|   ++.
T Consensus       134 ~~a~t~~~p~n~~f~~~n~vle~~dfl~---~~~~~fDiIlc------------L--SiTkW---IHLNwgD~G---L~~  190 (288)
T KOG2899|consen  134 DRAFTTDFPDNVWFQKENYVLESDDFLD---MIQPEFDIILC------------L--SITKW---IHLNWGDDG---LRR  190 (288)
T ss_pred             cccccccCCcchhcccccEEEecchhhh---hccccccEEEE------------E--Eeeee---EecccccHH---HHH
Confidence                   001111111       12221   12357888888            1  11111   123334444   457


Q ss_pred             HHHHHhcccccCcEEEEEECCcCcHHHHHHHHhc
Q 017476          311 LCNGTASMLKPGGFFAFETNGEKQCKFLKNYLEN  344 (371)
Q Consensus       311 il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~  344 (371)
                      ++..+.++|.|||+|++|-.+++....-++.++.
T Consensus       191 ff~kis~ll~pgGiLvvEPQpWksY~kaar~~e~  224 (288)
T KOG2899|consen  191 FFRKISSLLHPGGILVVEPQPWKSYKKAARRSEK  224 (288)
T ss_pred             HHHHHHHhhCcCcEEEEcCCchHHHHHHHHHHHH
Confidence            8899999999999999999888776666665543

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.02  E-value=2.7e-09  Score=98.78  Aligned_cols=123  Identities=10%  Similarity=-0.062  Sum_probs=85.6

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH------H-----cCCCCcEEEEEcCcccccc--
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ------R-----YGLQDIIEIRQGSWFGKLK--  261 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~------~-----~gl~~~v~~~~gD~~~~l~--  261 (371)
                      ++.+||++|||.|.-++.||..   +.+|+|+|+|+.|++.+.+...      .     .--..+++++++|+++.-.  
T Consensus        43 ~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~  119 (226)
T PRK13256         43 DSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA  119 (226)
T ss_pred             CCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence            4579999999999999999984   6789999999999998865210      0     0012359999999998532  


Q ss_pred             cCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCc---------
Q 017476          262 DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGE---------  332 (371)
Q Consensus       262 ~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~---------  332 (371)
                      ...++||+|+=      ...+..++++.+                  .+..+.+.+.|+|||.+++..-..         
T Consensus       120 ~~~~~fD~VyD------ra~~~Alpp~~R------------------~~Y~~~l~~lL~pgg~llll~~~~~~~~~GPPf  175 (226)
T PRK13256        120 NNLPVFDIWYD------RGAYIALPNDLR------------------TNYAKMMLEVCSNNTQILLLVMEHDKKSQTPPY  175 (226)
T ss_pred             cccCCcCeeee------ehhHhcCCHHHH------------------HHHHHHHHHHhCCCcEEEEEEEecCCCCCCCCC
Confidence            22368999873      222333444332                  267778889999999987765211         


Q ss_pred             -CcHHHHHHHHhc
Q 017476          333 -KQCKFLKNYLEN  344 (371)
Q Consensus       333 -~q~~~v~~~l~~  344 (371)
                       -..+++++++..
T Consensus       176 ~v~~~e~~~lf~~  188 (226)
T PRK13256        176 SVTQAELIKNFSA  188 (226)
T ss_pred             cCCHHHHHHhccC
Confidence             134677777763

>PLN02823 spermine synthase

Probab=99.01  E-value=1.9e-08  Score=98.68  Aligned_cols=153  Identities=14%  Similarity=0.169  Sum_probs=101.3

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC---CCCcEEEEEcCcccccccCCCceeEEE
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG---LQDIIEIRQGSWFGKLKDVEGKLSGVV  271 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~g---l~~~v~~~~gD~~~~l~~~~~~fDlIv  271 (371)
                      .+++||.+|+|.|..+..+.+. .+..+|+.||++++.+++|++++..++   -.++++++.+|..+.+....++||+|+
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~-~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi  181 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRH-KTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII  181 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence            4679999999999999988885 355789999999999999999875432   145899999999888765567899999


Q ss_pred             EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHH-HHhcccccCcEEEEEECCc---CcHHHHHHHHhcccc
Q 017476          272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCN-GTASMLKPGGFFAFETNGE---KQCKFLKNYLENDSA  347 (371)
Q Consensus       272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~-~a~~~LkpgG~lvle~~~~---~q~~~v~~~l~~~~~  347 (371)
                      .+.+- +...           .|...|.        -..+++ .+.+.|+|||++++.....   .+.+.+..+++.. .
T Consensus       182 ~D~~d-p~~~-----------~~~~~Ly--------t~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl-~  240 (336)
T PLN02823        182 GDLAD-PVEG-----------GPCYQLY--------TKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTL-R  240 (336)
T ss_pred             ecCCC-cccc-----------Ccchhhc--------cHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHH-H
Confidence            97431 1000           0000011        125666 6789999999999886421   1233333333322 1


Q ss_pred             CCceeEEEEec----CCCCceEEEEE
Q 017476          348 CSFCNVSIVSD----FAGIQRFVTGF  369 (371)
Q Consensus       348 ~gf~~v~~~~D----l~g~~R~~~a~  369 (371)
                      .-|..+..+..    +.+..-|++|-
T Consensus       241 ~vF~~v~~y~~~vPsf~~~w~f~~aS  266 (336)
T PLN02823        241 QVFKYVVPYTAHVPSFADTWGWVMAS  266 (336)
T ss_pred             HhCCCEEEEEeecCCCCCceEEEEEe
Confidence            34777766542    33334555554

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=99.01  E-value=7.9e-09  Score=100.79  Aligned_cols=130  Identities=22%  Similarity=0.268  Sum_probs=99.5

Q ss_pred             ceeeEeeC--CcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 017476          160 DLVLSVEE--GVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA  237 (371)
Q Consensus       160 ~~~~~v~~--~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~  237 (371)
                      |..|.++.  -.|.||-.+|..-  +.+..      ..+.+|+|+.+|.|.+++.+|+.  ....|+|+|+||.|++.++
T Consensus       159 G~~f~vD~~Kv~Fsprl~~ER~R--va~~v------~~GE~V~DmFAGVGpfsi~~Ak~--g~~~V~A~diNP~A~~~L~  228 (341)
T COG2520         159 GCRFKVDVAKVYFSPRLSTERAR--VAELV------KEGETVLDMFAGVGPFSIPIAKK--GRPKVYAIDINPDAVEYLK  228 (341)
T ss_pred             CEEEEEchHHeEECCCchHHHHH--HHhhh------cCCCEEEEccCCcccchhhhhhc--CCceEEEEecCHHHHHHHH
Confidence            44555544  4566886665422  11222      13679999999999999999996  3445999999999999999


Q ss_pred             HHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhc
Q 017476          238 FNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTAS  317 (371)
Q Consensus       238 ~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~  317 (371)
                      +|++.|++.+++..++||..+..... +.+|-|++|-|...             |                 .++..|.+
T Consensus       229 eNi~LN~v~~~v~~i~gD~rev~~~~-~~aDrIim~~p~~a-------------~-----------------~fl~~A~~  277 (341)
T COG2520         229 ENIRLNKVEGRVEPILGDAREVAPEL-GVADRIIMGLPKSA-------------H-----------------EFLPLALE  277 (341)
T ss_pred             HHHHhcCccceeeEEeccHHHhhhcc-ccCCEEEeCCCCcc-------------h-----------------hhHHHHHH
Confidence            99999999999999999998765543 78999999876521             1                 56777888


Q ss_pred             ccccCcEEEEEEC
Q 017476          318 MLKPGGFFAFETN  330 (371)
Q Consensus       318 ~LkpgG~lvle~~  330 (371)
                      .+++||++.+...
T Consensus       278 ~~k~~g~iHyy~~  290 (341)
T COG2520         278 LLKDGGIIHYYEF  290 (341)
T ss_pred             HhhcCcEEEEEec
Confidence            9999999887653

>PRK06202 hypothetical protein; Provisional

Probab=98.97  E-value=4e-09  Score=98.05  Aligned_cols=75  Identities=33%  Similarity=0.406  Sum_probs=55.2

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh---CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEE
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL---GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV  271 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~---~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIv  271 (371)
                      ++.+|||+|||+|.++..+++..   +++.+|+|+|+|+++++.|+++....+    +++..++... +...+++||+|+
T Consensus        60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~~-l~~~~~~fD~V~  134 (232)
T PRK06202         60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG----VTFRQAVSDE-LVAEGERFDVVT  134 (232)
T ss_pred             CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC----CeEEEEeccc-ccccCCCccEEE
Confidence            45699999999999999888643   345699999999999999998865443    4454444322 222347899999


Q ss_pred             EcC
Q 017476          272 SNP  274 (371)
Q Consensus       272 sNP  274 (371)
                      +|-
T Consensus       135 ~~~  137 (232)
T PRK06202        135 SNH  137 (232)
T ss_pred             ECC
Confidence            974

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.96  E-value=3.2e-08  Score=97.97  Aligned_cols=164  Identities=20%  Similarity=0.272  Sum_probs=111.4

Q ss_pred             CCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHHcCC
Q 017476          167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS-KGSIIAVDLNPLAAAVAAFNAQRYGL  245 (371)
Q Consensus       167 ~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~-~~~V~gvDis~~al~~A~~n~~~~gl  245 (371)
                      .|.+++......++-.++       +..++.+|||+|++.|.=+..+|+.... +..|+++|+++.-++..+.|+++.|+
T Consensus       135 ~G~~~vQd~sS~l~a~~L-------~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~  207 (355)
T COG0144         135 EGLIYVQDEASQLPALVL-------DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV  207 (355)
T ss_pred             ceEEEEcCHHHHHHHHHc-------CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC
Confidence            444444444444444333       3345789999999999999999997633 35679999999999999999999999


Q ss_pred             CCcEEEEEcCcccccccC--CCceeEEEEcCCCCCCCCcccchhhhcc-cCccccccCCCCcHHH-HHHHHHHHhccccc
Q 017476          246 QDIIEIRQGSWFGKLKDV--EGKLSGVVSNPPYIPSDDISGLQVEVGK-HEPRLALDGGVDGLDY-LLHLCNGTASMLKP  321 (371)
Q Consensus       246 ~~~v~~~~gD~~~~l~~~--~~~fDlIvsNPPYi~~~~~~~l~~ev~~-~ep~~aL~gg~dGl~~-~~~il~~a~~~Lkp  321 (371)
                      .+ +.++..|........  .++||.|+.++|+...+.+..- +++.+ ..+..     -..+.. -.++++.+.+.|||
T Consensus       208 ~n-v~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~-Pd~~~~~~~~~-----i~~l~~lQ~~iL~~a~~~lk~  280 (355)
T COG0144         208 RN-VIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRD-PDVKWRRTPED-----IAELAKLQKEILAAALKLLKP  280 (355)
T ss_pred             Cc-eEEEecccccccccccccCcCcEEEECCCCCCCcccccC-ccccccCCHHH-----HHHHHHHHHHHHHHHHHhcCC
Confidence            87 888888764322211  2369999999999876655321 22211 11110     011222 24799999999999


Q ss_pred             CcEEEEEEC---CcCcHHHHHHHHhc
Q 017476          322 GGFFAFETN---GEKQCKFLKNYLEN  344 (371)
Q Consensus       322 gG~lvle~~---~~~q~~~v~~~l~~  344 (371)
                      ||.|++.+-   .....+.|..++++
T Consensus       281 GG~LVYSTCS~~~eENE~vV~~~L~~  306 (355)
T COG0144         281 GGVLVYSTCSLTPEENEEVVERFLER  306 (355)
T ss_pred             CCEEEEEccCCchhcCHHHHHHHHHh
Confidence            999999773   33455566677765

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=98.95  E-value=6.1e-09  Score=107.14  Aligned_cols=167  Identities=23%  Similarity=0.243  Sum_probs=108.4

Q ss_pred             CcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHHHcC
Q 017476          168 GVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS---KGSIIAVDLNPLAAAVAAFNAQRYG  244 (371)
Q Consensus       168 ~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~---~~~V~gvDis~~al~~A~~n~~~~g  244 (371)
                      ..|.||..++++++.+..        .+..+|.|.+||||.+.+..++.+..   ...++|.|+++....+|+.|+-.+|
T Consensus       167 EfyTP~~v~~liv~~l~~--------~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhg  238 (489)
T COG0286         167 EFYTPREVSELIVELLDP--------EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHG  238 (489)
T ss_pred             ccCChHHHHHHHHHHcCC--------CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhC
Confidence            356799998888887643        12348999999999999988887632   3679999999999999999999999


Q ss_pred             CCCcEEEEEcCccccccc----CCCceeEEEEcCCCCCCCCcccchhhhcccCccccccC-CCCcHHHHHHHHHHHhccc
Q 017476          245 LQDIIEIRQGSWFGKLKD----VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDG-GVDGLDYLLHLCNGTASML  319 (371)
Q Consensus       245 l~~~v~~~~gD~~~~l~~----~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~g-g~dGl~~~~~il~~a~~~L  319 (371)
                      +...+....+|-+.....    ..++||.|++||||....-...+.... .. .+....+ ..-.-.....+++.+..+|
T Consensus       239 i~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~af~~h~~~~l  316 (489)
T COG0286         239 IEGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESE-QD-ERFFFYGVFPTKNSADLAFLQHILYKL  316 (489)
T ss_pred             CCccccccccccccCCcccccCCccceeEEEeCCCCCcccccccccccc-cc-ccccccCCCCCCCchHHHHHHHHHHhc
Confidence            874467777776553322    236799999999997332222110000 10 0111111 1111122246777778999


Q ss_pred             ccCcEEEEEECC-----cCcHHHHHHHHhc
Q 017476          320 KPGGFFAFETNG-----EKQCKFLKNYLEN  344 (371)
Q Consensus       320 kpgG~lvle~~~-----~~q~~~v~~~l~~  344 (371)
                      +|||+..+.+..     ..-...+++.+-+
T Consensus       317 ~~~g~aaivl~~gvlfr~~~e~~IR~~l~~  346 (489)
T COG0286         317 KPGGRAAIVLPDGVLFRGGAEKDIRKDLLE  346 (489)
T ss_pred             CCCceEEEEecCCcCcCCCchHHHHHHHHh
Confidence            999887776531     1134556655553

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.94  E-value=5.8e-09  Score=100.78  Aligned_cols=107  Identities=22%  Similarity=0.238  Sum_probs=81.4

Q ss_pred             CCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEE
Q 017476          193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS  272 (371)
Q Consensus       193 ~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvs  272 (371)
                      ..+++.|||+|||+|.+++..|+.  ...+|+|||.|.-+ +.|++.+..|++.+.|++++|...+- .-+.+++|+|||
T Consensus        58 lf~dK~VlDVGcGtGILS~F~akA--GA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi-~LP~eKVDiIvS  133 (346)
T KOG1499|consen   58 LFKDKTVLDVGCGTGILSMFAAKA--GARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDI-ELPVEKVDIIVS  133 (346)
T ss_pred             hcCCCEEEEcCCCccHHHHHHHHh--CcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEE-ecCccceeEEee
Confidence            456889999999999999999997  46799999999866 99999999999999999999998664 222479999998


Q ss_pred             cCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEE
Q 017476          273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFA  326 (371)
Q Consensus       273 NPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lv  326 (371)
                                 .++.-.+.||            ..+..++-.--++|+|||.++
T Consensus       134 -----------EWMGy~Ll~E------------sMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  134 -----------EWMGYFLLYE------------SMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             -----------hhhhHHHHHh------------hhhhhhhhhhhhccCCCceEc
Confidence                       1222222222            122344444457999999764

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.94  E-value=1.3e-08  Score=92.98  Aligned_cols=120  Identities=17%  Similarity=0.298  Sum_probs=98.4

Q ss_pred             chHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 017476          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ  253 (371)
Q Consensus       174 p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~  253 (371)
                      |+--.+++.+++..       .+++.||+|+=||.-++.+|..++++++|+++|+++++.+++.+-.+..|+..+|++++
T Consensus        59 ~d~g~fl~~li~~~-------~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~  131 (237)
T KOG1663|consen   59 PDKGQFLQMLIRLL-------NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIE  131 (237)
T ss_pred             hHHHHHHHHHHHHh-------CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeee
Confidence            44455666666655       46799999999999999999999889999999999999999999999999999999999


Q ss_pred             cCcccccccC-----CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476          254 GSWFGKLKDV-----EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE  328 (371)
Q Consensus       254 gD~~~~l~~~-----~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle  328 (371)
                      |+..+.+..+     .+.||+++.+                  +           --+.|....+.+.++|++||++++.
T Consensus       132 g~a~esLd~l~~~~~~~tfDfaFvD------------------a-----------dK~nY~~y~e~~l~Llr~GGvi~~D  182 (237)
T KOG1663|consen  132 GPALESLDELLADGESGTFDFAFVD------------------A-----------DKDNYSNYYERLLRLLRVGGVIVVD  182 (237)
T ss_pred             cchhhhHHHHHhcCCCCceeEEEEc------------------c-----------chHHHHHHHHHHHhhcccccEEEEe
Confidence            9988765432     4689999972                  1           0234456777888999999999985


Q ss_pred             E
Q 017476          329 T  329 (371)
Q Consensus       329 ~  329 (371)
                      -
T Consensus       183 N  183 (237)
T KOG1663|consen  183 N  183 (237)
T ss_pred             c
Confidence            4

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.93  E-value=1.1e-08  Score=94.83  Aligned_cols=127  Identities=21%  Similarity=0.318  Sum_probs=98.8

Q ss_pred             CeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccC--CCceeEEEEcC
Q 017476          197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV--EGKLSGVVSNP  274 (371)
Q Consensus       197 ~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~--~~~fDlIvsNP  274 (371)
                      ..+||||||.|.+.+.+|+.. |+..++|||+....+..|.+.+.+.++. ++.++++|+.+.+...  +++.|-|..|-
T Consensus        50 pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~F  127 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINF  127 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEEC
Confidence            489999999999999999985 9999999999999999999999999997 4999999987655433  35899999997


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHH-HHHHHh
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKF-LKNYLE  343 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~-v~~~l~  343 (371)
                      |=-+...         +|+-+.-         ....+++...+.|+|||.+.+-++.....+. +...+.
T Consensus       128 PDPWpKk---------RH~KRRl---------~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~  179 (227)
T COG0220         128 PDPWPKK---------RHHKRRL---------TQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVLE  179 (227)
T ss_pred             CCCCCCc---------ccccccc---------CCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHHh
Confidence            7444332         2322211         1237888999999999999999965555555 344433

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.92  E-value=1.3e-09  Score=99.23  Aligned_cols=123  Identities=24%  Similarity=0.317  Sum_probs=85.6

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc-cCCCceeEEEEcC
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-DVEGKLSGVVSNP  274 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~-~~~~~fDlIvsNP  274 (371)
                      -.++||||||||..+..+-...   .+++|||||..|++.|.+.    |+-+  .+.+++....++ ...++||+|++  
T Consensus       126 F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea~~Fl~~~~~er~DLi~A--  194 (287)
T COG4976         126 FRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEK----GLYD--TLYVAEAVLFLEDLTQERFDLIVA--  194 (287)
T ss_pred             cceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhc----cchH--HHHHHHHHHHhhhccCCcccchhh--
Confidence            4689999999999999987763   6899999999999998764    3322  344444433332 22478999998  


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC---C------------cCcHHHHH
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN---G------------EKQCKFLK  339 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~---~------------~~q~~~v~  339 (371)
                                  .+|.-|            +..+..++..+...|+|||.+.|.+-   +            ......|+
T Consensus       195 ------------aDVl~Y------------lG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr  250 (287)
T COG4976         195 ------------ADVLPY------------LGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVR  250 (287)
T ss_pred             ------------hhHHHh------------hcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHH
Confidence                        233333            33455788889999999999999652   1            11234577


Q ss_pred             HHHhccccCCceeEEEE
Q 017476          340 NYLENDSACSFCNVSIV  356 (371)
Q Consensus       340 ~~l~~~~~~gf~~v~~~  356 (371)
                      +.++.   .||.-|++.
T Consensus       251 ~~l~~---~Gl~~i~~~  264 (287)
T COG4976         251 ALLAA---SGLEVIAIE  264 (287)
T ss_pred             HHHHh---cCceEEEee
Confidence            77775   788776654

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.90  E-value=1.2e-08  Score=103.68  Aligned_cols=104  Identities=23%  Similarity=0.307  Sum_probs=74.5

Q ss_pred             CCeEEEECCcccHHHHHHHHH---hCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEE
Q 017476          196 DGFWVDLGTGSGAIAIGIARV---LGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS  272 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~---~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvs  272 (371)
                      +..|+|+|||+|-+....++.   .+...+|+|||.|+.|....++.++.+++.++|+++++|+.+.-.  ..++|+|||
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l--pekvDIIVS  264 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL--PEKVDIIVS  264 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH--SS-EEEEEE
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC--CCceeEEEE
Confidence            568999999999998766653   223569999999999998888877889999999999999976433  369999999


Q ss_pred             cCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEE
Q 017476          273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFF  325 (371)
Q Consensus       273 NPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~l  325 (371)
                                 .+......+|             ...+.+..+.+.|||||.+
T Consensus       265 -----------ElLGsfg~nE-------------l~pE~Lda~~rfLkp~Gi~  293 (448)
T PF05185_consen  265 -----------ELLGSFGDNE-------------LSPECLDAADRFLKPDGIM  293 (448)
T ss_dssp             --------------BTTBTTT-------------SHHHHHHHGGGGEEEEEEE
T ss_pred             -----------eccCCccccc-------------cCHHHHHHHHhhcCCCCEE
Confidence                       1222222222             1225678888999999975

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.89  E-value=6.7e-09  Score=92.54  Aligned_cols=128  Identities=17%  Similarity=0.274  Sum_probs=79.4

Q ss_pred             chHHHHHHHHHHHhhh--cCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC--CCCcE
Q 017476          174 PETELMVDLVSDVLVR--DNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG--LQDII  249 (371)
Q Consensus       174 p~te~lv~~~~~~~~~--~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~g--l~~~v  249 (371)
                      +.+..|.+++......  ......+.+|||||||+|..++.++... ...+|+..|.++ .++.++.|++.|+  ...++
T Consensus        22 ~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v   99 (173)
T PF10294_consen   22 PAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRV   99 (173)
T ss_dssp             -HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------
T ss_pred             chHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccc
Confidence            3455666666653200  1123467899999999999999999963 567999999999 9999999999987  56679


Q ss_pred             EEEEcCcccccc--c-CCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEE
Q 017476          250 EIRQGSWFGKLK--D-VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFA  326 (371)
Q Consensus       250 ~~~~gD~~~~l~--~-~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lv  326 (371)
                      .+..-||.+...  . ...+||+|++              .++. |.+           +.+..+++.+.++|+++|.++
T Consensus       100 ~v~~L~Wg~~~~~~~~~~~~~D~Ila--------------sDv~-Y~~-----------~~~~~L~~tl~~ll~~~~~vl  153 (173)
T PF10294_consen  100 SVRPLDWGDELDSDLLEPHSFDVILA--------------SDVL-YDE-----------ELFEPLVRTLKRLLKPNGKVL  153 (173)
T ss_dssp             EEEE--TTS-HHHHHHS-SSBSEEEE--------------ES---S-G-----------GGHHHHHHHHHHHBTT-TTEE
T ss_pred             cCcEEEecCcccccccccccCCEEEE--------------eccc-chH-----------HHHHHHHHHHHHHhCCCCEEE
Confidence            999999977431  1 1358999998              2232 222           234577788889999999877


Q ss_pred             EEE
Q 017476          327 FET  329 (371)
Q Consensus       327 le~  329 (371)
                      +-.
T Consensus       154 ~~~  156 (173)
T PF10294_consen  154 LAY  156 (173)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            766

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.89  E-value=5e-09  Score=96.80  Aligned_cols=126  Identities=24%  Similarity=0.234  Sum_probs=85.1

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH-HHHHcC----------CCCcEEEEEcCcccccccC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF-NAQRYG----------LQDIIEIRQGSWFGKLKDV  263 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~-n~~~~g----------l~~~v~~~~gD~~~~l~~~  263 (371)
                      .+.+||.+|||.|.-+..||..   +.+|+|+|+|+.|++.|.+ |.....          -.++|+++++|+|+.-...
T Consensus        37 ~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~  113 (218)
T PF05724_consen   37 PGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED  113 (218)
T ss_dssp             TSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred             CCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence            4569999999999999999984   6799999999999999843 221010          1235899999999854443


Q ss_pred             CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC--------C---c
Q 017476          264 EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN--------G---E  332 (371)
Q Consensus       264 ~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~--------~---~  332 (371)
                      .++||+|+=      ...+..++++.+.                  +..+.+.++|+|||.+++.+-        |   .
T Consensus       114 ~g~fD~iyD------r~~l~Alpp~~R~------------------~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~  169 (218)
T PF05724_consen  114 VGKFDLIYD------RTFLCALPPEMRE------------------RYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFS  169 (218)
T ss_dssp             HHSEEEEEE------CSSTTTS-GGGHH------------------HHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS--
T ss_pred             cCCceEEEE------ecccccCCHHHHH------------------HHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCC
Confidence            468999984      3344455555432                  677788899999999544321        1   1


Q ss_pred             CcHHHHHHHHhccccCCce
Q 017476          333 KQCKFLKNYLENDSACSFC  351 (371)
Q Consensus       333 ~q~~~v~~~l~~~~~~gf~  351 (371)
                      -..+++.+++.    .+|.
T Consensus       170 v~~~ev~~l~~----~~f~  184 (218)
T PF05724_consen  170 VTEEEVRELFG----PGFE  184 (218)
T ss_dssp             --HHHHHHHHT----TTEE
T ss_pred             CCHHHHHHHhc----CCcE
Confidence            23567788886    4564

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.89  E-value=6.2e-08  Score=90.48  Aligned_cols=135  Identities=19%  Similarity=0.183  Sum_probs=106.5

Q ss_pred             CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccC-CCceeEE
Q 017476          192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV-EGKLSGV  270 (371)
Q Consensus       192 ~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~-~~~fDlI  270 (371)
                      +..++.+|++-|||||.++.++++..+|.++++..|....-.+.|++-.+.+|+.+++++..-|....-... ...+|.|
T Consensus       102 ~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaV  181 (314)
T KOG2915|consen  102 EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAV  181 (314)
T ss_pred             cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccceE
Confidence            455788999999999999999999999999999999999999999999999999999999999986532222 4689999


Q ss_pred             EEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCc-EEEEEECCcCcHHHHHHHHhccccCC
Q 017476          271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGG-FFAFETNGEKQCKFLKNYLENDSACS  349 (371)
Q Consensus       271 vsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG-~lvle~~~~~q~~~v~~~l~~~~~~g  349 (371)
                      +.+-|-.                 .              ..+-.+.++||.+| +++--.+...|.+...+.+.+   .|
T Consensus       182 FLDlPaP-----------------w--------------~AiPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~---~g  227 (314)
T KOG2915|consen  182 FLDLPAP-----------------W--------------EAIPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRS---LG  227 (314)
T ss_pred             EEcCCCh-----------------h--------------hhhhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHh---CC
Confidence            9975531                 1              22334455788666 665555566777777777764   78


Q ss_pred             ceeEEEEecCC
Q 017476          350 FCNVSIVSDFA  360 (371)
Q Consensus       350 f~~v~~~~Dl~  360 (371)
                      |.+|+++.++-
T Consensus       228 f~~i~~vEv~~  238 (314)
T KOG2915|consen  228 FIEIETVEVLL  238 (314)
T ss_pred             CceEEEEEeeh
Confidence            99999988776

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.86  E-value=1.2e-08  Score=96.38  Aligned_cols=86  Identities=19%  Similarity=0.297  Sum_probs=66.4

Q ss_pred             HHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccc
Q 017476          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG  258 (371)
Q Consensus       179 lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~  258 (371)
                      +++.+++.+    ...++.+|||+|||+|.++..+++..   .+|+++|+++.+++.+++++..   ..+++++++|+.+
T Consensus        17 i~~~i~~~~----~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~   86 (253)
T TIGR00755        17 VIQKIVEAA----NVLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALK   86 (253)
T ss_pred             HHHHHHHhc----CCCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhc
Confidence            344444444    23346799999999999999999974   4699999999999999988743   2469999999976


Q ss_pred             ccccCCCcee---EEEEcCCCC
Q 017476          259 KLKDVEGKLS---GVVSNPPYI  277 (371)
Q Consensus       259 ~l~~~~~~fD---lIvsNPPYi  277 (371)
                      ...   ..+|   .|++|+||.
T Consensus        87 ~~~---~~~d~~~~vvsNlPy~  105 (253)
T TIGR00755        87 VDL---PDFPKQLKVVSNLPYN  105 (253)
T ss_pred             CCh---hHcCCcceEEEcCChh
Confidence            422   2466   999999985

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=98.85  E-value=1.1e-08  Score=91.96  Aligned_cols=119  Identities=20%  Similarity=0.207  Sum_probs=85.3

Q ss_pred             CeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE-EEEcCcccccccCCCceeEEEEcCC
Q 017476          197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIE-IRQGSWFGKLKDVEGKLSGVVSNPP  275 (371)
Q Consensus       197 ~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~-~~~gD~~~~l~~~~~~fDlIvsNPP  275 (371)
                      ..+|++|||+|..--..-.  .|..+|+++|.++.|-+.|.+.++.+.-. ++. |+.++..+...-.++++|.||+-  
T Consensus        78 ~~vLEvgcGtG~Nfkfy~~--~p~~svt~lDpn~~mee~~~ks~~E~k~~-~~~~fvva~ge~l~~l~d~s~DtVV~T--  152 (252)
T KOG4300|consen   78 GDVLEVGCGTGANFKFYPW--KPINSVTCLDPNEKMEEIADKSAAEKKPL-QVERFVVADGENLPQLADGSYDTVVCT--  152 (252)
T ss_pred             cceEEecccCCCCcccccC--CCCceEEEeCCcHHHHHHHHHHHhhccCc-ceEEEEeechhcCcccccCCeeeEEEE--
Confidence            4689999999998655433  27889999999999999999999887544 365 88888754321236899999981  


Q ss_pred             CCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhc
Q 017476          276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLEN  344 (371)
Q Consensus       276 Yi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~  344 (371)
                                          +.|..    .+...+.+++..++|+|||++++.-++..+......++.+
T Consensus       153 --------------------lvLCS----ve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~  197 (252)
T KOG4300|consen  153 --------------------LVLCS----VEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQ  197 (252)
T ss_pred             --------------------EEEec----cCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHH
Confidence                                11111    1234478888899999999987755466666665555543

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.83  E-value=1.8e-08  Score=90.30  Aligned_cols=69  Identities=20%  Similarity=0.273  Sum_probs=57.5

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc-CCCceeEEEEc
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VEGKLSGVVSN  273 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~-~~~~fDlIvsN  273 (371)
                      ++.+|||||||.|.+...|.+.  .+..++|||++++.+..+.++    |    +.++++|+.+.+.. .+++||.||.+
T Consensus        13 pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~r----G----v~Viq~Dld~gL~~f~d~sFD~VIls   82 (193)
T PF07021_consen   13 PGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVAR----G----VSVIQGDLDEGLADFPDQSFDYVILS   82 (193)
T ss_pred             CCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHc----C----CCEEECCHHHhHhhCCCCCccEEehH
Confidence            4569999999999999999886  578999999999988766553    4    77999999877653 36799999983

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.81  E-value=5.7e-08  Score=93.26  Aligned_cols=142  Identities=21%  Similarity=0.317  Sum_probs=103.2

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccC-CCceeEEEE
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV-EGKLSGVVS  272 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~-~~~fDlIvs  272 (371)
                      .++.+|||+|+|.|.-+..++..+...+.|+++|+++.-+...+.|+++.|..+ +.+...|........ ...||.|+.
T Consensus        84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~D~~~~~~~~~~~~fd~Vlv  162 (283)
T PF01189_consen   84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN-VIVINADARKLDPKKPESKFDRVLV  162 (283)
T ss_dssp             TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS-EEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred             cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce-EEEEeeccccccccccccccchhhc
Confidence            356789999999999999999988667899999999999999999999999876 888878876543221 246999999


Q ss_pred             cCCCCCCCCcccchhhhcccCccccccC-CCC--cHH-HHHHHHHHHhccc----ccCcEEEEEEC---CcCcHHHHHHH
Q 017476          273 NPPYIPSDDISGLQVEVGKHEPRLALDG-GVD--GLD-YLLHLCNGTASML----KPGGFFAFETN---GEKQCKFLKNY  341 (371)
Q Consensus       273 NPPYi~~~~~~~l~~ev~~~ep~~aL~g-g~d--Gl~-~~~~il~~a~~~L----kpgG~lvle~~---~~~q~~~v~~~  341 (371)
                      ++|......+..        .|.....- ..+  .+. .=+++++.+.+.+    ||||++++.+-   .....+.|..+
T Consensus       163 DaPCSg~G~i~r--------~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~f  234 (283)
T PF01189_consen  163 DAPCSGLGTIRR--------NPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKF  234 (283)
T ss_dssp             ECSCCCGGGTTT--------CTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHH
T ss_pred             CCCccchhhhhh--------ccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHH
Confidence            999976544332        22211111 111  122 2247999999999    99999999873   23344556666


Q ss_pred             Hhc
Q 017476          342 LEN  344 (371)
Q Consensus       342 l~~  344 (371)
                      +++
T Consensus       235 l~~  237 (283)
T PF01189_consen  235 LKR  237 (283)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            665

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>KOG2730 consensus Methylase [General function prediction only]

Probab=98.81  E-value=1.1e-08  Score=92.67  Aligned_cols=99  Identities=26%  Similarity=0.359  Sum_probs=80.2

Q ss_pred             cccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 017476          171 IPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIE  250 (371)
Q Consensus       171 iPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~  250 (371)
                      .|.++.+.+...+....       ....|+|..||.|..++..|..   ...|+++|++|.-++.|+.|++-+|++++|.
T Consensus        77 Tpe~ia~~iA~~v~~~~-------~~~~iidaf~g~gGntiqfa~~---~~~VisIdiDPikIa~AkhNaeiYGI~~rIt  146 (263)
T KOG2730|consen   77 TPEKIAEHIANRVVACM-------NAEVIVDAFCGVGGNTIQFALQ---GPYVIAIDIDPVKIACARHNAEVYGVPDRIT  146 (263)
T ss_pred             ccHHHHHHHHHHHHHhc-------CcchhhhhhhcCCchHHHHHHh---CCeEEEEeccHHHHHHHhccceeecCCceeE
Confidence            35666677776665543       2458999999999999999886   3689999999999999999999999999999


Q ss_pred             EEEcCcccccccC---CCceeEEEEcCCCCCC
Q 017476          251 IRQGSWFGKLKDV---EGKLSGVVSNPPYIPS  279 (371)
Q Consensus       251 ~~~gD~~~~l~~~---~~~fDlIvsNPPYi~~  279 (371)
                      |++||+++....+   ...+|+|+.-||+...
T Consensus       147 FI~GD~ld~~~~lq~~K~~~~~vf~sppwggp  178 (263)
T KOG2730|consen  147 FICGDFLDLASKLKADKIKYDCVFLSPPWGGP  178 (263)
T ss_pred             EEechHHHHHHHHhhhhheeeeeecCCCCCCc
Confidence            9999998754322   3457899999998643

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.80  E-value=2.5e-07  Score=87.60  Aligned_cols=149  Identities=21%  Similarity=0.293  Sum_probs=111.4

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCC--cEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccc--cccCCCceeEE
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSK--GSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK--LKDVEGKLSGV  270 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~--~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~--l~~~~~~fDlI  270 (371)
                      .+-+|+|+.||.|...+.+.... +.  ..|.-.|.|+..++..++-++..|+++.++|.++|+++.  +....-+.+++
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~-~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~  213 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKH-PERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA  213 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhC-CCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence            46799999999999888888775 54  689999999999999999999999999779999999885  23333456776


Q ss_pred             EEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcC-cHH-------------
Q 017476          271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEK-QCK-------------  336 (371)
Q Consensus       271 vsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~-q~~-------------  336 (371)
                      |.-==|              ..-|.         -+.++..+......+.|||++++....+. |.+             
T Consensus       214 iVsGL~--------------ElF~D---------n~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~  270 (311)
T PF12147_consen  214 IVSGLY--------------ELFPD---------NDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGK  270 (311)
T ss_pred             EEecch--------------hhCCc---------HHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCC
Confidence            651110              11111         24566788899999999999999653322 333             


Q ss_pred             ----------HHHHHHhccccCCceeEEEEecCCCCceEEEEEe
Q 017476          337 ----------FLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFR  370 (371)
Q Consensus       337 ----------~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~~  370 (371)
                                ++.+++++   +||..++..-|-.|+.-|.+|+|
T Consensus       271 ~WvMRrRsq~EmD~Lv~~---aGF~K~~q~ID~~GIFTVSlA~r  311 (311)
T PF12147_consen  271 AWVMRRRSQAEMDQLVEA---AGFEKIDQRIDEWGIFTVSLARR  311 (311)
T ss_pred             ceEEEecCHHHHHHHHHH---cCCchhhheeccCCceEEEeecC
Confidence                      34444443   78999999999999988888865

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.80  E-value=5.8e-08  Score=87.82  Aligned_cols=73  Identities=12%  Similarity=0.111  Sum_probs=56.4

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc-cCCCceeEEEEc
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-DVEGKLSGVVSN  273 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~-~~~~~fDlIvsN  273 (371)
                      ++.+|||+|||+|.++..+++.  ....++|+|+++++++.|+++        +++++++|+.+.+. ...++||+|++|
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~~~~sfD~Vi~~   82 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDE--KQVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAFPDKSFDYVILS   82 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhc--cCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhcccccCCCCcCEEEEh
Confidence            3568999999999999988875  356789999999999888642        26788888865332 224689999998


Q ss_pred             CCCC
Q 017476          274 PPYI  277 (371)
Q Consensus       274 PPYi  277 (371)
                      ..+.
T Consensus        83 ~~l~   86 (194)
T TIGR02081        83 QTLQ   86 (194)
T ss_pred             hHhH
Confidence            6653

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK04148 hypothetical protein; Provisional

Probab=98.80  E-value=2.5e-08  Score=84.80  Aligned_cols=82  Identities=18%  Similarity=0.240  Sum_probs=63.6

Q ss_pred             HHHHHHHHhhhcCCCCCCCeEEEECCcccH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcc
Q 017476          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGA-IAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF  257 (371)
Q Consensus       179 lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~-~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~  257 (371)
                      +.+++.+.+    ...++.+++|+|||+|. ++..|++.   +..|+|+|+++.+++.|+++    +    ++++.+|++
T Consensus         4 i~~~l~~~~----~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~----~----~~~v~dDlf   68 (134)
T PRK04148          4 IAEFIAENY----EKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL----G----LNAFVDDLF   68 (134)
T ss_pred             HHHHHHHhc----ccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh----C----CeEEECcCC
Confidence            455555544    22245789999999996 88888863   57999999999998888776    2    789999999


Q ss_pred             cccccCCCceeEEEE-cCC
Q 017476          258 GKLKDVEGKLSGVVS-NPP  275 (371)
Q Consensus       258 ~~l~~~~~~fDlIvs-NPP  275 (371)
                      ++-..+-+.+|+|.+ +||
T Consensus        69 ~p~~~~y~~a~liysirpp   87 (134)
T PRK04148         69 NPNLEIYKNAKLIYSIRPP   87 (134)
T ss_pred             CCCHHHHhcCCEEEEeCCC
Confidence            976665678999998 555

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.79  E-value=4.4e-07  Score=81.67  Aligned_cols=133  Identities=20%  Similarity=0.136  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHhhhcCCCC-CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q 017476          176 TELMVDLVSDVLVRDNDGL-RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG  254 (371)
Q Consensus       176 te~lv~~~~~~~~~~~~~~-~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~g  254 (371)
                      .+.+..++++-+....... ...+++|+|+|.|.-++.+|-.+ |+.+++.+|.+..-+...+.-+...|+++ ++++++
T Consensus        28 ~~~~~~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L~n-v~v~~~  105 (184)
T PF02527_consen   28 EEIWERHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGLSN-VEVING  105 (184)
T ss_dssp             HHHHHHHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-SS-EEEEES
T ss_pred             HHHHHHHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCCCC-EEEEEe
Confidence            3445556665542111111 12279999999999999998875 89999999999999999999999999985 999999


Q ss_pred             CcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCc
Q 017476          255 SWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQ  334 (371)
Q Consensus       255 D~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q  334 (371)
                      .+.+  ....++||+|++              ..+                ..+..+++.+..+|++||.+++-- |...
T Consensus       106 R~E~--~~~~~~fd~v~a--------------RAv----------------~~l~~l~~~~~~~l~~~G~~l~~K-G~~~  152 (184)
T PF02527_consen  106 RAEE--PEYRESFDVVTA--------------RAV----------------APLDKLLELARPLLKPGGRLLAYK-GPDA  152 (184)
T ss_dssp             -HHH--TTTTT-EEEEEE--------------ESS----------------SSHHHHHHHHGGGEEEEEEEEEEE-SS--
T ss_pred             eecc--cccCCCccEEEe--------------ehh----------------cCHHHHHHHHHHhcCCCCEEEEEc-CCCh
Confidence            9876  223478999998              111                123478888899999999999998 4455


Q ss_pred             HHHHHHHHh
Q 017476          335 CKFLKNYLE  343 (371)
Q Consensus       335 ~~~v~~~l~  343 (371)
                      .+++.+.-.
T Consensus       153 ~~El~~~~~  161 (184)
T PF02527_consen  153 EEELEEAKK  161 (184)
T ss_dssp             HHHHHTHHH
T ss_pred             HHHHHHHHh
Confidence            555554433

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.78  E-value=6e-08  Score=90.59  Aligned_cols=98  Identities=26%  Similarity=0.297  Sum_probs=75.5

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ...+|+|+|+|+|.++..+++++ |+.+++..|+ |..++.+++       .+|++++.||++++++   . +|+++.. 
T Consensus       100 ~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~~~P---~-~D~~~l~-  165 (241)
T PF00891_consen  100 GFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFDPLP---V-ADVYLLR-  165 (241)
T ss_dssp             TSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTTCCS---S-ESEEEEE-
T ss_pred             CccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc-------ccccccccccHHhhhc---c-ccceeee-
Confidence            45689999999999999999996 9999999999 889888887       5789999999996654   3 9999871 


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccC--cEEEEEE
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPG--GFFAFET  329 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~Lkpg--G~lvle~  329 (371)
                           ..++.++                  -+....+++++++.|+||  |.|++.-
T Consensus       166 -----~vLh~~~------------------d~~~~~iL~~~~~al~pg~~g~llI~e  199 (241)
T PF00891_consen  166 -----HVLHDWS------------------DEDCVKILRNAAAALKPGKDGRLLIIE  199 (241)
T ss_dssp             -----SSGGGS-------------------HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred             -----hhhhhcc------------------hHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence                 1111111                  244568999999999999  9887743

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.73  E-value=2.1e-07  Score=87.64  Aligned_cols=137  Identities=18%  Similarity=0.178  Sum_probs=93.2

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC---CCcEEEEEcCcccccccCCC-ceeEE
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGL---QDIIEIRQGSWFGKLKDVEG-KLSGV  270 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl---~~~v~~~~gD~~~~l~~~~~-~fDlI  270 (371)
                      ++++||=+|-|.|..+..+.+. .+..+|+.||+++..++.|++-......   .+|++++.+|....+....+ +||+|
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~-~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI  154 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKH-PPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI  154 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTS-TT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred             CcCceEEEcCCChhhhhhhhhc-CCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence            5779999999999999999875 3467999999999999999997654322   35899999999887776556 89999


Q ss_pred             EEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC-cCcHHHHHHHHhccccCC
Q 017476          271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG-EKQCKFLKNYLENDSACS  349 (371)
Q Consensus       271 vsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~-~~q~~~v~~~l~~~~~~g  349 (371)
                      +.+.+- +....             ..|.        -+.+++.+.+.|+|||++++..+. ..+.+.+..+.+.. ..-
T Consensus       155 i~D~~d-p~~~~-------------~~l~--------t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl-~~~  211 (246)
T PF01564_consen  155 IVDLTD-PDGPA-------------PNLF--------TREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTL-RSV  211 (246)
T ss_dssp             EEESSS-TTSCG-------------GGGS--------SHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHH-HTT
T ss_pred             EEeCCC-CCCCc-------------cccc--------CHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHH-HHh
Confidence            997553 11110             0011        236888889999999999997632 22334444433322 234


Q ss_pred             ceeEEE
Q 017476          350 FCNVSI  355 (371)
Q Consensus       350 f~~v~~  355 (371)
                      |..+..
T Consensus       212 F~~v~~  217 (246)
T PF01564_consen  212 FPQVKP  217 (246)
T ss_dssp             SSEEEE
T ss_pred             CCceEE
Confidence            655544

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.70  E-value=1.6e-07  Score=97.16  Aligned_cols=137  Identities=15%  Similarity=0.106  Sum_probs=102.6

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc-CCCceeEEEEc
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VEGKLSGVVSN  273 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~-~~~~fDlIvsN  273 (371)
                      ....+||+|||.|.+.+.+|... |+..++|+|++...+..|.+.+...++.| +.++.+|+...... ..+++|.|..|
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~l~N-~~~~~~~~~~~~~~~~~~sv~~i~i~  424 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQNITN-FLLFPNNLDLILNDLPNNSLDGIYIL  424 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcCCCe-EEEEcCCHHHHHHhcCcccccEEEEE
Confidence            35689999999999999999985 99999999999999999999888888875 88998886321111 13679999999


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeE
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNV  353 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v  353 (371)
                      -|=.+...         +|.-+.- .        -..+++...+.|+|||.+.+-++.....+.+...+.+.  ++|..+
T Consensus       425 FPDPWpKk---------rh~krRl-~--------~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~~--~~f~~~  484 (506)
T PRK01544        425 FPDPWIKN---------KQKKKRI-F--------NKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQN--GNFEII  484 (506)
T ss_pred             CCCCCCCC---------CCccccc-c--------CHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhC--CCeEec
Confidence            77544322         2211111 1        12688888999999999999997666677777777753  457544

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.69  E-value=4.6e-07  Score=82.91  Aligned_cols=119  Identities=27%  Similarity=0.403  Sum_probs=89.3

Q ss_pred             EEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCC
Q 017476          199 WVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIP  278 (371)
Q Consensus       199 VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~  278 (371)
                      |+|+||--|.+.+.|.+. +...+++++|+++..++.|++|++.+|+.++++++.||-++.+.. .+..|.||.      
T Consensus         1 vaDIGtDHgyLpi~L~~~-~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~-~e~~d~ivI------   72 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKN-GKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP-GEDVDTIVI------   72 (205)
T ss_dssp             EEEET-STTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G-GG---EEEE------
T ss_pred             CceeccchhHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC-CCCCCEEEE------
Confidence            689999999999999997 455689999999999999999999999999999999999888765 123787775      


Q ss_pred             CCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCcee
Q 017476          279 SDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCN  352 (371)
Q Consensus       279 ~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~  352 (371)
                          ..+                  |-..+..|++.....++....|++..+  .+...++++|.+   .||.-
T Consensus        73 ----AGM------------------GG~lI~~ILe~~~~~~~~~~~lILqP~--~~~~~LR~~L~~---~gf~I  119 (205)
T PF04816_consen   73 ----AGM------------------GGELIIEILEAGPEKLSSAKRLILQPN--THAYELRRWLYE---NGFEI  119 (205)
T ss_dssp             ----EEE-------------------HHHHHHHHHHTGGGGTT--EEEEEES--S-HHHHHHHHHH---TTEEE
T ss_pred             ----ecC------------------CHHHHHHHHHhhHHHhccCCeEEEeCC--CChHHHHHHHHH---CCCEE
Confidence                121                  234577899999888887778888773  678899999996   67854

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=98.65  E-value=8.7e-07  Score=84.42  Aligned_cols=204  Identities=16%  Similarity=0.201  Sum_probs=129.7

Q ss_pred             ceeeEeeCCccccc-chHHHHHHHHHHHhhhcCCCCCCC--eEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 017476          160 DLVLSVEEGVFIPR-PETELMVDLVSDVLVRDNDGLRDG--FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA  236 (371)
Q Consensus       160 ~~~~~v~~~vliPr-p~te~lv~~~~~~~~~~~~~~~~~--~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A  236 (371)
                      ++...+.++.|+|+ |.-.-++.++-+.+ ...+..++.  +=+|||+|.-++--.+.... .++..+|+|+++..+..|
T Consensus        65 gl~veiP~grLcPtVPnR~nYihwI~DLL-ss~q~~k~~i~~GiDIgtgasci~~llg~rq-~n~~f~~teidd~s~~~a  142 (419)
T KOG2912|consen   65 GLSVEIPLGRLCPTVPNRLNYIHWIEDLL-SSQQSDKSTIRRGIDIGTGASCIYPLLGARQ-NNWYFLATEIDDMSFNYA  142 (419)
T ss_pred             CceEecCccccCCCCccchhhHHHHHHHh-hcccCCCcceeeeeeccCchhhhHHhhhchh-ccceeeeeeccccccchh
Confidence            67888899999998 77777777877777 333222222  24899999998876665543 568999999999999999


Q ss_pred             HHHHHHcCCCCcEEEEEcCccccc-----cc-CCCceeEEEEcCCCCCCCCcccc--hhhhcccCccccccCCCCc----
Q 017476          237 AFNAQRYGLQDIIEIRQGSWFGKL-----KD-VEGKLSGVVSNPPYIPSDDISGL--QVEVGKHEPRLALDGGVDG----  304 (371)
Q Consensus       237 ~~n~~~~gl~~~v~~~~gD~~~~l-----~~-~~~~fDlIvsNPPYi~~~~~~~l--~~ev~~~ep~~aL~gg~dG----  304 (371)
                      ..|+..+++..++.+++.+-.+.+     .. .+..||+..|||||.....-...  ....++--|..+-.||...    
T Consensus       143 ~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcNPPFfe~~~Ea~~n~~~s~~rtpp~~vc~gg~~e~v~e  222 (419)
T KOG2912|consen  143 KSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCNPPFFENQLEAKGNNSRSPRRTPPSSVCTGGSQEFVSE  222 (419)
T ss_pred             hccccccccccceeeEEecchhhcchhhhccCccceeeEEecCCchhhchhhhccccccCCCCCCcccccccchhHHHhh
Confidence            999999999988888887432211     11 13469999999999865221111  1122234455555555321    


Q ss_pred             ---HHHHHHHHHHHhcccccCcEEEEEECCc-CcHHHHHHHHhccccCCceeEEEEec-CCCCceEEEEE
Q 017476          305 ---LDYLLHLCNGTASMLKPGGFFAFETNGE-KQCKFLKNYLENDSACSFCNVSIVSD-FAGIQRFVTGF  369 (371)
Q Consensus       305 ---l~~~~~il~~a~~~LkpgG~lvle~~~~-~q~~~v~~~l~~~~~~gf~~v~~~~D-l~g~~R~~~a~  369 (371)
                         ..+..+|+.... .|+.+=.++-.+-|. .....+.+-|.+   -|-..|.+..= .....|+.+|+
T Consensus       223 ggev~fvnRiitds~-~lr~~IrwYT~MlGKKsslk~l~~kL~e---~gv~kv~itel~qGkTkRW~LaW  288 (419)
T KOG2912|consen  223 GGEVSFVNRIITDSF-VLRKRIRWYTCMLGKKSSLKPLISKLRE---QGVTKVKITELVQGKTKRWGLAW  288 (419)
T ss_pred             ccHHHHHHHHHHHHH-HhhhcceEEeeecccccccHHHHHHHHH---cCCceEEEEEeeccccceeeEEe
Confidence               344456665443 345554555544332 244555666654   34556666543 44478888876

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.65  E-value=7.9e-07  Score=80.78  Aligned_cols=140  Identities=14%  Similarity=0.092  Sum_probs=96.9

Q ss_pred             eEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc-------CCCceeEE
Q 017476          198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-------VEGKLSGV  270 (371)
Q Consensus       198 ~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~-------~~~~fDlI  270 (371)
                      +|||||||||..+..+|+.+ |..+-.-.|.++..+.-.+..+...++++-..-+.-|+.+....       ..+.||.|
T Consensus        28 ~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i  106 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI  106 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence            59999999999999999998 88899999999999888888887777765434445554443111       13589999


Q ss_pred             EEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC--------------------
Q 017476          271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN--------------------  330 (371)
Q Consensus       271 vsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~--------------------  330 (371)
                      +|              ..+....|          ......+++.+.+.|++||.|++.-+                    
T Consensus       107 ~~--------------~N~lHI~p----------~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr  162 (204)
T PF06080_consen  107 FC--------------INMLHISP----------WSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLR  162 (204)
T ss_pred             ee--------------hhHHHhcC----------HHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHh
Confidence            98              11112222          24456899999999999999999432                    


Q ss_pred             ------CcCcHHHHHHHHhccccCCceeEEEEecCCCCceE
Q 017476          331 ------GEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRF  365 (371)
Q Consensus       331 ------~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~  365 (371)
                            |.+..+.|.++..+   .|+.-++.+.-.+++.-+
T Consensus       163 ~rdp~~GiRD~e~v~~lA~~---~GL~l~~~~~MPANN~~L  200 (204)
T PF06080_consen  163 SRDPEWGIRDIEDVEALAAA---HGLELEEDIDMPANNLLL  200 (204)
T ss_pred             cCCCCcCccCHHHHHHHHHH---CCCccCcccccCCCCeEE
Confidence                  44445555555553   567666665555544333

The function of this family is unknown.

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.64  E-value=1.5e-07  Score=90.11  Aligned_cols=79  Identities=23%  Similarity=0.320  Sum_probs=67.5

Q ss_pred             CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEE
Q 017476          192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV  271 (371)
Q Consensus       192 ~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIv  271 (371)
                      ....++.|||+|||+|.++...|+.  ...+|++||.|. |.+.|++-++.|++.+||.++.|...+ ++ +.++.|+||
T Consensus       174 sDF~~kiVlDVGaGSGILS~FAaqA--GA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEd-ie-LPEk~DviI  248 (517)
T KOG1500|consen  174 SDFQDKIVLDVGAGSGILSFFAAQA--GAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIED-IE-LPEKVDVII  248 (517)
T ss_pred             cccCCcEEEEecCCccHHHHHHHHh--CcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCcccc-cc-CchhccEEE
Confidence            4567889999999999999999986  567999999976 779999999999999999999998855 32 347999999


Q ss_pred             EcCC
Q 017476          272 SNPP  275 (371)
Q Consensus       272 sNPP  275 (371)
                      +-|-
T Consensus       249 SEPM  252 (517)
T KOG1500|consen  249 SEPM  252 (517)
T ss_pred             eccc
Confidence            9653

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=98.63  E-value=1.3e-07  Score=86.51  Aligned_cols=121  Identities=17%  Similarity=0.278  Sum_probs=86.5

Q ss_pred             cccee-eEeeCCccccc-chHHHHHHHHHHHhhhcCCC--CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHH
Q 017476          158 WRDLV-LSVEEGVFIPR-PETELMVDLVSDVLVRDNDG--LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAA  233 (371)
Q Consensus       158 f~~~~-~~v~~~vliPr-p~te~lv~~~~~~~~~~~~~--~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al  233 (371)
                      ||++. ..+.++.|-|- |....++..+.+.+......  .+..++||+|+|.-|+--.+..+. =+++.+|.|+++.++
T Consensus        37 fY~v~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~e-YgwrfvGseid~~sl  115 (292)
T COG3129          37 FYAVRYWDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHE-YGWRFVGSEIDSQSL  115 (292)
T ss_pred             hcceeEecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCccccccccccee-ecceeecCccCHHHH
Confidence            34444 45667777764 77777777777777432222  245689999999988755444331 268999999999999


Q ss_pred             HHHHHHHHHc-CCCCcEEEEEcC----cccccccCCCceeEEEEcCCCCCC
Q 017476          234 AVAAFNAQRY-GLQDIIEIRQGS----WFGKLKDVEGKLSGVVSNPPYIPS  279 (371)
Q Consensus       234 ~~A~~n~~~~-gl~~~v~~~~gD----~~~~l~~~~~~fDlIvsNPPYi~~  279 (371)
                      +.|+.++..| +++..|+++...    .+..+....++||+.+|||||+.+
T Consensus       116 ~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~s  166 (292)
T COG3129         116 SSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHDS  166 (292)
T ss_pred             HHHHHHHHcCcchhhheeEEeccCccccccccccccceeeeEecCCCcchh
Confidence            9999999988 787778777543    333333345799999999999865

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.60  E-value=1.4e-07  Score=90.74  Aligned_cols=92  Identities=28%  Similarity=0.380  Sum_probs=72.0

Q ss_pred             HHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcc
Q 017476          178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF  257 (371)
Q Consensus       178 ~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~  257 (371)
                      .|++.+++.+    ...++..++|.+||.|..+..+++.++++++|+|+|.+++|++.|++++..   .++++++++|+.
T Consensus         6 Vll~Evl~~L----~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~   78 (296)
T PRK00050          6 VLLDEVVDAL----AIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFS   78 (296)
T ss_pred             ccHHHHHHhh----CCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHH
Confidence            4566666666    233467999999999999999999874578999999999999999988754   357999999987


Q ss_pred             cccccCC---CceeEEEEcCCC
Q 017476          258 GKLKDVE---GKLSGVVSNPPY  276 (371)
Q Consensus       258 ~~l~~~~---~~fDlIvsNPPY  276 (371)
                      +......   ..+|+|+.|.=+
T Consensus        79 ~l~~~l~~~~~~vDgIl~DLGv  100 (296)
T PRK00050         79 NLKEVLAEGLGKVDGILLDLGV  100 (296)
T ss_pred             HHHHHHHcCCCccCEEEECCCc
Confidence            6432222   279999998654

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.59  E-value=4.6e-07  Score=88.76  Aligned_cols=123  Identities=18%  Similarity=0.203  Sum_probs=81.3

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC---------CCCcEEEEEcCcccc-----c
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG---------LQDIIEIRQGSWFGK-----L  260 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~g---------l~~~v~~~~gD~~~~-----l  260 (371)
                      ++.+|||||||-|.-..-....  .-..++|+|++..+++.|++..+...         ..-...++.+|.+..     +
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~  139 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL  139 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred             CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence            5679999999999877776664  45799999999999999999883211         112367889988753     1


Q ss_pred             ccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHH
Q 017476          261 KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKN  340 (371)
Q Consensus       261 ~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~  340 (371)
                      .....+||+|-|-                  +--|.++.    -.+..+.++..+...|+|||+++..+.   .++.+..
T Consensus       140 ~~~~~~FDvVScQ------------------FalHY~Fe----se~~ar~~l~Nvs~~Lk~GG~FIgT~~---d~~~i~~  194 (331)
T PF03291_consen  140 PPRSRKFDVVSCQ------------------FALHYAFE----SEEKARQFLKNVSSLLKPGGYFIGTTP---DSDEIVK  194 (331)
T ss_dssp             SSTTS-EEEEEEE------------------S-GGGGGS----SHHHHHHHHHHHHHTEEEEEEEEEEEE----HHHHHC
T ss_pred             cccCCCcceeehH------------------HHHHHhcC----CHHHHHHHHHHHHHhcCCCCEEEEEec---CHHHHHH
Confidence            2212589999982                  11122221    145667899999999999999999994   2444544


Q ss_pred             HHhc
Q 017476          341 YLEN  344 (371)
Q Consensus       341 ~l~~  344 (371)
                      .+++
T Consensus       195 ~l~~  198 (331)
T PF03291_consen  195 RLRE  198 (331)
T ss_dssp             CHHC
T ss_pred             HHHh
Confidence            4443

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.58  E-value=3.3e-07  Score=86.33  Aligned_cols=89  Identities=17%  Similarity=0.159  Sum_probs=68.0

Q ss_pred             HHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccc
Q 017476          180 VDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK  259 (371)
Q Consensus       180 v~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~  259 (371)
                      ++.+.+..    +..++.+|||+|+|.|+++..+++.   ..+|+|+|+++..++..++...   ..++++++++|+.+.
T Consensus        19 ~~kIv~~a----~~~~~d~VlEIGpG~GaLT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~   88 (259)
T COG0030          19 IDKIVEAA----NISPGDNVLEIGPGLGALTEPLLER---AARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKF   88 (259)
T ss_pred             HHHHHHhc----CCCCCCeEEEECCCCCHHHHHHHhh---cCeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcC
Confidence            44444443    3334679999999999999999996   4689999999999999888765   335699999999874


Q ss_pred             cccCCCceeEEEEcCCCCC
Q 017476          260 LKDVEGKLSGVVSNPPYIP  278 (371)
Q Consensus       260 l~~~~~~fDlIvsNPPYi~  278 (371)
                      -.....+++.||+|.||.-
T Consensus        89 d~~~l~~~~~vVaNlPY~I  107 (259)
T COG0030          89 DFPSLAQPYKVVANLPYNI  107 (259)
T ss_pred             cchhhcCCCEEEEcCCCcc
Confidence            3210016899999999963

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.58  E-value=4.4e-07  Score=82.48  Aligned_cols=128  Identities=20%  Similarity=0.276  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHhhhcCCCCCCCeEEEECCcccH----HHHHHHHHhC---C-CcEEEEEeCCHHHHHHHHHHH--------
Q 017476          177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGA----IAIGIARVLG---S-KGSIIAVDLNPLAAAVAAFNA--------  240 (371)
Q Consensus       177 e~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~----~al~la~~~~---~-~~~V~gvDis~~al~~A~~n~--------  240 (371)
                      +.+.+.++..+........+-+|+..||+||-    +++.+.....   + ..+|+|+|+|+.+++.|++-.        
T Consensus        13 ~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~   92 (196)
T PF01739_consen   13 EALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRG   92 (196)
T ss_dssp             HHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTT
T ss_pred             HHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhh
Confidence            55666666322122222245699999999994    4554444211   1 469999999999999997621        


Q ss_pred             ------HHc-----C--------CCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCC
Q 017476          241 ------QRY-----G--------LQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGG  301 (371)
Q Consensus       241 ------~~~-----g--------l~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg  301 (371)
                            +++     +        +.++|+|.+.|+.+. ....+.||+|+|.      +.+-.++.              
T Consensus        93 ~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~-~~~~~~fD~I~CR------NVlIYF~~--------------  151 (196)
T PF01739_consen   93 LPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDP-DPPFGRFDLIFCR------NVLIYFDP--------------  151 (196)
T ss_dssp             S-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S-------EEEEEE-------SSGGGS-H--------------
T ss_pred             hHHHHHHHhccccCCCceeEChHHcCceEEEecccCCC-CcccCCccEEEec------CEEEEeCH--------------
Confidence                  111     0        124689999999882 2235799999992      22222222              


Q ss_pred             CCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          302 VDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       302 ~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                          +.-..+++...+.|+|||+|++-+
T Consensus       152 ----~~~~~vl~~l~~~L~pgG~L~lG~  175 (196)
T PF01739_consen  152 ----ETQQRVLRRLHRSLKPGGYLFLGH  175 (196)
T ss_dssp             ----HHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred             ----HHHHHHHHHHHHHcCCCCEEEEec
Confidence                334589999999999999999977

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.58  E-value=3.1e-07  Score=85.92  Aligned_cols=91  Identities=20%  Similarity=0.354  Sum_probs=72.8

Q ss_pred             HHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcc
Q 017476          178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF  257 (371)
Q Consensus       178 ~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~  257 (371)
                      .+++.+.+..    ...++..|||+|-|||.++..+...   +.+|+|+|+++.+++...+..+....+++.+++.||++
T Consensus        45 ~v~~~I~~ka----~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~l  117 (315)
T KOG0820|consen   45 LVIDQIVEKA----DLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFL  117 (315)
T ss_pred             HHHHHHHhcc----CCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccc
Confidence            3444444332    4456789999999999999999985   58999999999999999888876555688999999998


Q ss_pred             cccccCCCceeEEEEcCCCCC
Q 017476          258 GKLKDVEGKLSGVVSNPPYIP  278 (371)
Q Consensus       258 ~~l~~~~~~fDlIvsNPPYi~  278 (371)
                      ..-   ...||++|+|-||--
T Consensus       118 K~d---~P~fd~cVsNlPyqI  135 (315)
T KOG0820|consen  118 KTD---LPRFDGCVSNLPYQI  135 (315)
T ss_pred             cCC---CcccceeeccCCccc
Confidence            642   247999999999953

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.56  E-value=1.8e-06  Score=79.28  Aligned_cols=161  Identities=19%  Similarity=0.080  Sum_probs=108.2

Q ss_pred             ccchHHHHHHHHHHHhhhcCCCCC-CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 017476          172 PRPETELMVDLVSDVLVRDNDGLR-DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIE  250 (371)
Q Consensus       172 Prp~te~lv~~~~~~~~~~~~~~~-~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~  250 (371)
                      ++...+.+..++++.+........ +.+|+|+|+|.|.=++.+|-.+ |+.+|+-+|....-+...++-....+++| ++
T Consensus        43 ~~~~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~-p~~~vtLles~~Kk~~FL~~~~~eL~L~n-v~  120 (215)
T COG0357          43 IRDPEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAF-PDLKVTLLESLGKKIAFLREVKKELGLEN-VE  120 (215)
T ss_pred             CCCHHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhc-cCCcEEEEccCchHHHHHHHHHHHhCCCC-eE
Confidence            455567777777765521111112 5799999999999999999654 88899999999999999999999999986 99


Q ss_pred             EEEcCcccccccCCCc-eeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          251 IRQGSWFGKLKDVEGK-LSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       251 ~~~gD~~~~l~~~~~~-fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      ++++.+.+....  .+ ||+|+|              ..                +..+..+.+-+..++++||.+++-.
T Consensus       121 i~~~RaE~~~~~--~~~~D~vts--------------RA----------------va~L~~l~e~~~pllk~~g~~~~~k  168 (215)
T COG0357         121 IVHGRAEEFGQE--KKQYDVVTS--------------RA----------------VASLNVLLELCLPLLKVGGGFLAYK  168 (215)
T ss_pred             EehhhHhhcccc--cccCcEEEe--------------eh----------------ccchHHHHHHHHHhcccCCcchhhh
Confidence            999998654332  23 999998              11                2334467788889999999875433


Q ss_pred             C--CcCcHHHHHHHHhccccCCceeEEEEecCCCC-ceEEE
Q 017476          330 N--GEKQCKFLKNYLENDSACSFCNVSIVSDFAGI-QRFVT  367 (371)
Q Consensus       330 ~--~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~-~R~~~  367 (371)
                      .  +.+...+....+... ...+..+.......+. +|.++
T Consensus       169 ~~~~~~e~~e~~~a~~~~-~~~~~~~~~~~~p~~~~~r~l~  208 (215)
T COG0357         169 GLAGKDELPEAEKAILPL-GGQVEKVFSLTVPELDGERHLV  208 (215)
T ss_pred             HHhhhhhHHHHHHHHHhh-cCcEEEEEEeecCCCCCceEEE
Confidence            1  333444444444432 1233444444444442 45443

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.54  E-value=8.4e-07  Score=77.97  Aligned_cols=117  Identities=17%  Similarity=0.105  Sum_probs=79.2

Q ss_pred             EEEeCCHHHHHHHHHHHHHcC--CCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCC
Q 017476          224 IAVDLNPLAAAVAAFNAQRYG--LQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGG  301 (371)
Q Consensus       224 ~gvDis~~al~~A~~n~~~~g--l~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg  301 (371)
                      +|+|+|++|++.|+++....+  ..++++++++|..+ ++..++.||+|+++  |.            .++-        
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~~fD~v~~~--~~------------l~~~--------   57 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAID-LPFDDCEFDAVTMG--YG------------LRNV--------   57 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhh-CCCCCCCeeEEEec--ch------------hhcC--------
Confidence            489999999999988765332  23469999999865 44445789999984  11            1111        


Q ss_pred             CCcHHHHHHHHHHHhcccccCcEEEEEECC-----------------------------------------cCcHHHHHH
Q 017476          302 VDGLDYLLHLCNGTASMLKPGGFFAFETNG-----------------------------------------EKQCKFLKN  340 (371)
Q Consensus       302 ~dGl~~~~~il~~a~~~LkpgG~lvle~~~-----------------------------------------~~q~~~v~~  340 (371)
                          .....+++++.+.|||||.+++....                                         ....+++.+
T Consensus        58 ----~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~  133 (160)
T PLN02232         58 ----VDRLRAMKEMYRVLKPGSRVSILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELET  133 (160)
T ss_pred             ----CCHHHHHHHHHHHcCcCeEEEEEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHH
Confidence                12347889999999999999764211                                         112344555


Q ss_pred             HHhccccCCceeEEEEecCCCCceEEEEEe
Q 017476          341 YLENDSACSFCNVSIVSDFAGIQRFVTGFR  370 (371)
Q Consensus       341 ~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~~  370 (371)
                      +|++   .||..++...-..|.-.+.+|.|
T Consensus       134 ll~~---aGF~~~~~~~~~~g~~~~~~~~~  160 (160)
T PLN02232        134 LALE---AGFSSACHYEISGGFMGNLVAMR  160 (160)
T ss_pred             HHHH---cCCCcceEEECcchHhHeeEeeC
Confidence            6664   78998888777777766666543

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.53  E-value=1.8e-07  Score=83.53  Aligned_cols=143  Identities=22%  Similarity=0.312  Sum_probs=90.4

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc-----cc----CCC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL-----KD----VEG  265 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l-----~~----~~~  265 (371)
                      .+.++||+||++|.++..+.+..++..+|+|||+.+.           ... ..+.++++|..+..     ..    ..+
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~-~~~~~i~~d~~~~~~~~~i~~~~~~~~~   90 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL-QNVSFIQGDITNPENIKDIRKLLPESGE   90 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS--TTEEBTTGGGEEEEHSHHGGGSHGTTTC
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc-cceeeeecccchhhHHHhhhhhcccccc
Confidence            3479999999999999999986434689999999986           122 23777788875431     11    125


Q ss_pred             ceeEEEEcC-CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhc
Q 017476          266 KLSGVVSNP-PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLEN  344 (371)
Q Consensus       266 ~fDlIvsNP-PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~  344 (371)
                      ++|+|+|+- |......         ..+...       -+......+..+...|++||.+++-+-.......+...++.
T Consensus        91 ~~dlv~~D~~~~~~g~~---------~~d~~~-------~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~  154 (181)
T PF01728_consen   91 KFDLVLSDMAPNVSGDR---------NIDEFI-------SIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKR  154 (181)
T ss_dssp             SESEEEE-------SSH---------HSSHHH-------HHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHH
T ss_pred             CcceeccccccCCCCch---------hhHHHH-------HHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHh
Confidence            899999963 1111100         000000       13444556667788999999988877332222477777774


Q ss_pred             cccCCceeEEEEecCC----CCceEEEEE
Q 017476          345 DSACSFCNVSIVSDFA----GIQRFVTGF  369 (371)
Q Consensus       345 ~~~~gf~~v~~~~Dl~----g~~R~~~a~  369 (371)
                          .|..|.+++...    +.+++++++
T Consensus       155 ----~F~~v~~~Kp~~sr~~s~E~Ylv~~  179 (181)
T PF01728_consen  155 ----CFSKVKIVKPPSSRSESSEEYLVCR  179 (181)
T ss_dssp             ----HHHHEEEEE-TTSBTTCBEEEEESE
T ss_pred             ----CCeEEEEEECcCCCCCccEEEEEEc
Confidence                599999988654    677887765

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=98.52  E-value=8.7e-06  Score=75.53  Aligned_cols=135  Identities=21%  Similarity=0.242  Sum_probs=81.1

Q ss_pred             CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc-CCCceeEE
Q 017476          192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VEGKLSGV  270 (371)
Q Consensus       192 ~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~-~~~~fDlI  270 (371)
                      ....+++||=+|=.- ..++++|.. +...+|+.+|+++..++..++.+++.|++  ++.++.|+.++++. ..++||++
T Consensus        41 gdL~gk~il~lGDDD-LtSlA~al~-~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~~~~fD~f  116 (243)
T PF01861_consen   41 GDLEGKRILFLGDDD-LTSLALALT-GLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEELRGKFDVF  116 (243)
T ss_dssp             T-STT-EEEEES-TT--HHHHHHHH-T--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTTSS-BSEE
T ss_pred             CcccCCEEEEEcCCc-HHHHHHHhh-CCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHHhcCCCEE
Confidence            345678999988443 345555543 35679999999999999999999999987  99999999998875 36899999


Q ss_pred             EEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCc-EEEEEECCcC--c--HHHHHHHHhcc
Q 017476          271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGG-FFAFETNGEK--Q--CKFLKNYLEND  345 (371)
Q Consensus       271 vsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG-~lvle~~~~~--q--~~~v~~~l~~~  345 (371)
                      ++||||-                           ++-+.-|+..+...||..| ..++-.....  .  ...+++.+.+ 
T Consensus       117 ~TDPPyT---------------------------~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~-  168 (243)
T PF01861_consen  117 FTDPPYT---------------------------PEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLE-  168 (243)
T ss_dssp             EE---SS---------------------------HHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHT-
T ss_pred             EeCCCCC---------------------------HHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHH-
Confidence            9999995                           2345578888889998655 6666553322  1  2356777764 


Q ss_pred             ccCCceeEEEEecCC
Q 017476          346 SACSFCNVSIVSDFA  360 (371)
Q Consensus       346 ~~~gf~~v~~~~Dl~  360 (371)
                        .||.--.++++++
T Consensus       169 --~gl~i~dii~~Fn  181 (243)
T PF01861_consen  169 --MGLVITDIIPDFN  181 (243)
T ss_dssp             --S--EEEEEEEEEE
T ss_pred             --CCcCHHHHHhhhc
Confidence              6787666766653

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PRK00536 speE spermidine synthase; Provisional

Probab=98.52  E-value=4.4e-06  Score=79.15  Aligned_cols=182  Identities=9%  Similarity=-0.071  Sum_probs=113.2

Q ss_pred             CCceeeEee-cccccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEE
Q 017476          146 RKPFQYLVG-CEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSII  224 (371)
Q Consensus       146 ~~P~~yi~g-~~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~  224 (371)
                      .-+.|.|.- +..-+|.-+.++ ++.. ....|.+...++-.. .-.....+++||=+|.|-|..+..+.+.  +. +|+
T Consensus        25 kS~~Q~i~i~es~~fGr~LvLD-~~~~-te~dEfiYHEmLvHp-pl~~h~~pk~VLIiGGGDGg~~REvLkh--~~-~v~   98 (262)
T PRK00536         25 RSEHNILEIFKSKDFGEIAMLN-KQLL-FKNFLHIESELLAHM-GGCTKKELKEVLIVDGFDLELAHQLFKY--DT-HVD   98 (262)
T ss_pred             CCCCcEEEEEEccccccEEEEe-eeee-ecchhhhHHHHHHHH-HHhhCCCCCeEEEEcCCchHHHHHHHCc--CC-eeE
Confidence            356776533 444457777777 5554 333344444444333 1112345789999999999999999995  54 999


Q ss_pred             EEeCCHHHHHHHHHHHHHc--CC-CCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCC
Q 017476          225 AVDLNPLAAAVAAFNAQRY--GL-QDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGG  301 (371)
Q Consensus       225 gvDis~~al~~A~~n~~~~--gl-~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg  301 (371)
                      -|||+++.++.+++-+-..  ++ ..|++++.  +..  ....++||+||.+-.|                .        
T Consensus        99 mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~--~~~--~~~~~~fDVIIvDs~~----------------~--------  150 (262)
T PRK00536         99 FVQADEKILDSFISFFPHFHEVKNNKNFTHAK--QLL--DLDIKKYDLIICLQEP----------------D--------  150 (262)
T ss_pred             EEECCHHHHHHHHHHCHHHHHhhcCCCEEEee--hhh--hccCCcCCEEEEcCCC----------------C--------
Confidence            9999999999999943221  22 34788876  221  1113689999995211                0        


Q ss_pred             CCcHHHHHHHHHHHhcccccCcEEEEEECC-cCcHHHHHHHHhccccCCceeEEEEec---CCCCceEEEEE
Q 017476          302 VDGLDYLLHLCNGTASMLKPGGFFAFETNG-EKQCKFLKNYLENDSACSFCNVSIVSD---FAGIQRFVTGF  369 (371)
Q Consensus       302 ~dGl~~~~~il~~a~~~LkpgG~lvle~~~-~~q~~~v~~~l~~~~~~gf~~v~~~~D---l~g~~R~~~a~  369 (371)
                             ..+.+.+.+.|+|||.++..... .-+.+.+..+.+.. +..|..+..+.-   ..|..-|++|.
T Consensus       151 -------~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l-~~~F~~v~~y~~~vp~~g~wgf~~aS  214 (262)
T PRK00536        151 -------IHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNM-GDFFSIAMPFVAPLRILSNKGYIYAS  214 (262)
T ss_pred             -------hHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHH-HhhCCceEEEEecCCCcchhhhheec
Confidence                   14567788999999999996632 22444455555443 245776655432   13555555553

>PRK10742 putative methyltransferase; Provisional

Probab=98.52  E-value=7.5e-07  Score=83.21  Aligned_cols=80  Identities=25%  Similarity=0.269  Sum_probs=68.8

Q ss_pred             eEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc------C--CCCcEEEEEcCcccccccCCCceeE
Q 017476          198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY------G--LQDIIEIRQGSWFGKLKDVEGKLSG  269 (371)
Q Consensus       198 ~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~------g--l~~~v~~~~gD~~~~l~~~~~~fDl  269 (371)
                      +|||+.+|+|..++.++..   +++|+++|.|+.+..+.+.|+++.      +  +..+++++++|..+.+......||+
T Consensus        91 ~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDV  167 (250)
T PRK10742         91 DVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV  167 (250)
T ss_pred             EEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcE
Confidence            8999999999999999985   567999999999999999999884      2  2257999999998887655558999


Q ss_pred             EEEcCCCCCCC
Q 017476          270 VVSNPPYIPSD  280 (371)
Q Consensus       270 IvsNPPYi~~~  280 (371)
                      |+.+|||-...
T Consensus       168 VYlDPMfp~~~  178 (250)
T PRK10742        168 VYLDPMFPHKQ  178 (250)
T ss_pred             EEECCCCCCCc
Confidence            99999997543

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.51  E-value=1.8e-06  Score=82.65  Aligned_cols=110  Identities=21%  Similarity=0.265  Sum_probs=87.3

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEEcCcccccccCCCceeEEE
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG--L-QDIIEIRQGSWFGKLKDVEGKLSGVV  271 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~g--l-~~~v~~~~gD~~~~l~~~~~~fDlIv  271 (371)
                      .+++||-+|-|.|..+..+.+.. +-.+++.|||++..+++|++-+....  . ..|++++.+|..+.+.....+||+|+
T Consensus        76 ~pk~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi  154 (282)
T COG0421          76 NPKRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII  154 (282)
T ss_pred             CCCeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence            34699999999999999999974 67899999999999999999765432  2 46899999999988876556899999


Q ss_pred             Ec--CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          272 SN--PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       272 sN--PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      ++  +| +               -|..+|+        -..+++.+.+.|+++|+++...
T Consensus       155 ~D~tdp-~---------------gp~~~Lf--------t~eFy~~~~~~L~~~Gi~v~q~  190 (282)
T COG0421         155 VDSTDP-V---------------GPAEALF--------TEEFYEGCRRALKEDGIFVAQA  190 (282)
T ss_pred             EcCCCC-C---------------CcccccC--------CHHHHHHHHHhcCCCcEEEEec
Confidence            95  11 1               1112222        2378899999999999999985

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.49  E-value=9.9e-07  Score=83.75  Aligned_cols=127  Identities=21%  Similarity=0.260  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHhhhcCCCCCCCeEEEECCccc----HHHHHHHHHhC----CCcEEEEEeCCHHHHHHHHHHHHH-----c
Q 017476          177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSG----AIAIGIARVLG----SKGSIIAVDLNPLAAAVAAFNAQR-----Y  243 (371)
Q Consensus       177 e~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG----~~al~la~~~~----~~~~V~gvDis~~al~~A~~n~~~-----~  243 (371)
                      +.+.+.++..+...... .+-+|+-.||+||    .+++.+.+.++    ...+|+|+|+|..+|+.|+.-.-.     .
T Consensus        79 ~~l~~~v~p~l~~~~~~-~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~  157 (268)
T COG1352          79 EELRDEVLPELVKRKKG-RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLR  157 (268)
T ss_pred             HHHHHHHHHHHHhhccC-CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhc
Confidence            45666666544222211 4679999999999    57777777652    157999999999999999752110     1


Q ss_pred             C-----------------------CCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccC
Q 017476          244 G-----------------------LQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDG  300 (371)
Q Consensus       244 g-----------------------l~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~g  300 (371)
                      +                       +...|.|.+.|+.+... ..+.||+|+|      .+.+-.+..+            
T Consensus       158 ~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfC------RNVLIYFd~~------------  218 (268)
T COG1352         158 GLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFC------RNVLIYFDEE------------  218 (268)
T ss_pred             cCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc-ccCCCCEEEE------cceEEeeCHH------------
Confidence            1                       12357888888877653 3578999999      2222222222            


Q ss_pred             CCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          301 GVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       301 g~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                            .=.++++..+..|+|||+|++-+
T Consensus       219 ------~q~~il~~f~~~L~~gG~LflG~  241 (268)
T COG1352         219 ------TQERILRRFADSLKPGGLLFLGH  241 (268)
T ss_pred             ------HHHHHHHHHHHHhCCCCEEEEcc
Confidence                  22378888999999999999976

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.49  E-value=2.8e-07  Score=84.87  Aligned_cols=99  Identities=21%  Similarity=0.202  Sum_probs=65.9

Q ss_pred             eEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCC
Q 017476          198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYI  277 (371)
Q Consensus       198 ~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi  277 (371)
                      .++|+|||+|..++.+|..+   .+|+|+|+|+.||++|++.-...-......+...+..+ +...+++.|+|++-    
T Consensus        36 ~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~-L~g~e~SVDlI~~A----  107 (261)
T KOG3010|consen   36 LAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVD-LLGGEESVDLITAA----  107 (261)
T ss_pred             eEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCcccccCCcccccccccc-ccCCCcceeeehhh----
Confidence            79999999998888888875   58999999999999988742211100012333333333 33235789999981    


Q ss_pred             CCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCc-EEEE
Q 017476          278 PSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGG-FFAF  327 (371)
Q Consensus       278 ~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG-~lvl  327 (371)
                               ..+..|              ++.++.+.+.+.||+.| .+++
T Consensus       108 ---------qa~HWF--------------dle~fy~~~~rvLRk~Gg~iav  135 (261)
T KOG3010|consen  108 ---------QAVHWF--------------DLERFYKEAYRVLRKDGGLIAV  135 (261)
T ss_pred             ---------hhHHhh--------------chHHHHHHHHHHcCCCCCEEEE
Confidence                     222222              24588999999999877 4443

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=98.43  E-value=2.4e-06  Score=73.13  Aligned_cols=115  Identities=19%  Similarity=0.261  Sum_probs=78.1

Q ss_pred             EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCC-CceeEEEEcCCCCCCCCcccchhhhcccCccccccC
Q 017476          222 SIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVE-GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDG  300 (371)
Q Consensus       222 ~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~-~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~g  300 (371)
                      +|+|+||.++|++.+++.++..++.++++++..+-........ +++|+++.|-=|.|.+|..-.+.             
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~-------------   67 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTK-------------   67 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB---------------
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcC-------------
Confidence            6999999999999999999999998899999987644333233 48999999999998877443221             


Q ss_pred             CCCcHHHHHHHHHHHhcccccCcEEEEEEC-CcC----cHHHHHHHHhccccCCceeE
Q 017476          301 GVDGLDYLLHLCNGTASMLKPGGFFAFETN-GEK----QCKFLKNYLENDSACSFCNV  353 (371)
Q Consensus       301 g~dGl~~~~~il~~a~~~LkpgG~lvle~~-~~~----q~~~v~~~l~~~~~~gf~~v  353 (371)
                          -+.....++.+.+.|++||.+.+.+- |..    -.+.|.++++......|...
T Consensus        68 ----~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~  121 (140)
T PF06962_consen   68 ----PETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVL  121 (140)
T ss_dssp             ----HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEE
T ss_pred             ----cHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEE
Confidence                12233677888899999999988762 222    34567788887666677543

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=98.43  E-value=3.1e-07  Score=88.29  Aligned_cols=131  Identities=17%  Similarity=0.216  Sum_probs=91.9

Q ss_pred             CCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHH-------HHHHHHHHcCCCC-cEEEEEcCcccccccCC
Q 017476          193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAA-------VAAFNAQRYGLQD-IIEIRQGSWFGKLKDVE  264 (371)
Q Consensus       193 ~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~-------~A~~n~~~~gl~~-~v~~~~gD~~~~l~~~~  264 (371)
                      ..+++.|.|...|||.+.+..|. |  ++.|+|.||+-.++.       -.+.|.+++|... -+.++.+|...+.-...
T Consensus       206 v~pGdivyDPFVGTGslLvsaa~-F--Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn  282 (421)
T KOG2671|consen  206 VKPGDIVYDPFVGTGSLLVSAAH-F--GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSN  282 (421)
T ss_pred             cCCCCEEecCccccCceeeehhh-h--cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhc
Confidence            34678999999999999999988 4  689999999998876       3567888888544 36788888866433335


Q ss_pred             CceeEEEEcCCCCCCCCcccc--------h--hhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          265 GKLSGVVSNPPYIPSDDISGL--------Q--VEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       265 ~~fDlIvsNPPYi~~~~~~~l--------~--~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      ..||.|||+|||.-.......        .  ..-..|-|.....   .-.+.+..++.-+.++|..||++++=.
T Consensus       283 ~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~y---sl~~~v~dll~fss~~L~~ggrlv~w~  354 (421)
T KOG2671|consen  283 LKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQY---SLSSLVYDLLCFSSRRLVDGGRLVFWL  354 (421)
T ss_pred             ceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchh---HHHHHHhhHHHhhHhhhhcCceEEEec
Confidence            689999999999633221111        0  0111232322111   113566788999999999999999854

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.41  E-value=4.4e-07  Score=87.13  Aligned_cols=110  Identities=19%  Similarity=0.215  Sum_probs=75.3

Q ss_pred             CCeEEEECCcccH----HHHHHHHHhC---CCcEEEEEeCCHHHHHHHHHHHH------------------H-----cC-
Q 017476          196 DGFWVDLGTGSGA----IAIGIARVLG---SKGSIIAVDLNPLAAAVAAFNAQ------------------R-----YG-  244 (371)
Q Consensus       196 ~~~VLDlG~GsG~----~al~la~~~~---~~~~V~gvDis~~al~~A~~n~~------------------~-----~g-  244 (371)
                      +-+|+..||+||-    +++.+...++   ...+|+|+|+|+.+++.|++-.-                  .     .+ 
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            4699999999994    5555555321   14689999999999999987521                  0     00 


Q ss_pred             ------CCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcc
Q 017476          245 ------LQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASM  318 (371)
Q Consensus       245 ------l~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~  318 (371)
                            +..+|+|.+.|+.+......+.||+|+|.              .|.-|-.          -+.-..+++...+.
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cR--------------NvliyF~----------~~~~~~vl~~l~~~  251 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCR--------------NVMIYFD----------KTTQERILRRFVPL  251 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCccCCCcceeeHh--------------hHHhcCC----------HHHHHHHHHHHHHH
Confidence                  22457899999887422224789999992              1211110          12345789999999


Q ss_pred             cccCcEEEEEE
Q 017476          319 LKPGGFFAFET  329 (371)
Q Consensus       319 LkpgG~lvle~  329 (371)
                      |+|||+|++-+
T Consensus       252 L~pgG~L~lG~  262 (287)
T PRK10611        252 LKPDGLLFAGH  262 (287)
T ss_pred             hCCCcEEEEeC
Confidence            99999988877

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=4e-06  Score=75.87  Aligned_cols=103  Identities=18%  Similarity=0.281  Sum_probs=76.4

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHcCC---------CCcEEEEEcCcccccccCC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAFNAQRYGL---------QDIIEIRQGSWFGKLKDVE  264 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~-~V~gvDis~~al~~A~~n~~~~gl---------~~~v~~~~gD~~~~l~~~~  264 (371)
                      ++.++||+|+|||.++..++..++... .++|||.-++.++.+++|+...-.         ..++.++.||...-..+ .
T Consensus        82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e-~  160 (237)
T KOG1661|consen   82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE-Q  160 (237)
T ss_pred             cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc-c
Confidence            567999999999999999997765443 459999999999999999976531         23578899998665443 4


Q ss_pred             CceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC
Q 017476          265 GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN  330 (371)
Q Consensus       265 ~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~  330 (371)
                      .+||.|.+-     ...                           ..+-+.....|++||.+++-.+
T Consensus       161 a~YDaIhvG-----Aaa---------------------------~~~pq~l~dqL~~gGrllip~~  194 (237)
T KOG1661|consen  161 APYDAIHVG-----AAA---------------------------SELPQELLDQLKPGGRLLIPVG  194 (237)
T ss_pred             CCcceEEEc-----cCc---------------------------cccHHHHHHhhccCCeEEEeec
Confidence            689999871     100                           0223344478999999999883

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=98.34  E-value=9.1e-07  Score=81.57  Aligned_cols=105  Identities=17%  Similarity=0.248  Sum_probs=74.3

Q ss_pred             CeEEEECCcccHHHHHHHHHhCCC--cEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc-c--cCCCceeEEE
Q 017476          197 GFWVDLGTGSGAIAIGIARVLGSK--GSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL-K--DVEGKLSGVV  271 (371)
Q Consensus       197 ~~VLDlG~GsG~~al~la~~~~~~--~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l-~--~~~~~fDlIv  271 (371)
                      .+||++|||.|.....+.+.. ++  ..|++.|.|+.|++..++|.....  .++.....|+..+- .  ...+.+|+|+
T Consensus        73 ~~ilEvGCGvGNtvfPll~~~-~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it  149 (264)
T KOG2361|consen   73 ETILEVGCGVGNTVFPLLKTS-PNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIIT  149 (264)
T ss_pred             hhheeeccCCCcccchhhhcC-CCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEE
Confidence            389999999999999998863 55  789999999999999999875443  34555555554321 1  1247899887


Q ss_pred             EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476          272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE  328 (371)
Q Consensus       272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle  328 (371)
                      +  -|    .+..+.+                  +.....++...++|||||.+++-
T Consensus       150 ~--IF----vLSAi~p------------------ek~~~a~~nl~~llKPGG~llfr  182 (264)
T KOG2361|consen  150 L--IF----VLSAIHP------------------EKMQSVIKNLRTLLKPGGSLLFR  182 (264)
T ss_pred             E--EE----EEeccCh------------------HHHHHHHHHHHHHhCCCcEEEEe
Confidence            6  01    0111111                  33457888889999999999994

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.33  E-value=4.1e-06  Score=80.19  Aligned_cols=122  Identities=17%  Similarity=0.164  Sum_probs=84.8

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC-C----CcEEEEEcCcccc-----cccCCC
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGL-Q----DIIEIRQGSWFGK-----LKDVEG  265 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl-~----~~v~~~~gD~~~~-----l~~~~~  265 (371)
                      ...++|||||-|.-++-.-+.  .-..++|+||.+..++.|++..+...- .    -.+.|+.+|.+..     ++..+.
T Consensus       118 ~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp  195 (389)
T KOG1975|consen  118 GDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP  195 (389)
T ss_pred             ccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence            457999999999988877764  456899999999999999987654321 1    1378999997642     222233


Q ss_pred             ceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhc
Q 017476          266 KLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLEN  344 (371)
Q Consensus       266 ~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~  344 (371)
                      +||+|-|-                  |--|.++.    ..+-.+.++.++.++|+|||+++-.++.   ...+..-+++
T Consensus       196 ~fDivScQ------------------F~~HYaFe----tee~ar~~l~Nva~~LkpGG~FIgTiPd---sd~Ii~rlr~  249 (389)
T KOG1975|consen  196 RFDIVSCQ------------------FAFHYAFE----TEESARIALRNVAKCLKPGGVFIGTIPD---SDVIIKRLRA  249 (389)
T ss_pred             Ccceeeee------------------eeEeeeec----cHHHHHHHHHHHHhhcCCCcEEEEecCc---HHHHHHHHHh
Confidence            59998872                  22222222    1455678899999999999999998843   3444444554

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.29  E-value=1.1e-05  Score=73.36  Aligned_cols=137  Identities=24%  Similarity=0.260  Sum_probs=93.3

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc------cC-CCce
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK------DV-EGKL  267 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~------~~-~~~f  267 (371)
                      ++.+|+|||+-.|.++..+++..+++..|+|+|+.|-.           ..+ .|.++++|+.+.-.      .. ...+
T Consensus        45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~~~-~V~~iq~d~~~~~~~~~l~~~l~~~~~  112 (205)
T COG0293          45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------PIP-GVIFLQGDITDEDTLEKLLEALGGAPV  112 (205)
T ss_pred             CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------cCC-CceEEeeeccCccHHHHHHHHcCCCCc
Confidence            46799999999999999999998777789999998833           123 39999999976421      11 2347


Q ss_pred             eEEEEcC--CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhcc
Q 017476          268 SGVVSNP--PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLEND  345 (371)
Q Consensus       268 DlIvsNP--PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~  345 (371)
                      |+|+|++  .-......        .| ++        -+......++-+..+|++||.+++-.--....+.+...++  
T Consensus       113 DvV~sD~ap~~~g~~~~--------Dh-~r--------~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~--  173 (205)
T COG0293         113 DVVLSDMAPNTSGNRSV--------DH-AR--------SMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALR--  173 (205)
T ss_pred             ceEEecCCCCcCCCccc--------cH-HH--------HHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHH--
Confidence            9999853  11100000        11 00        0233446777888999999999997733334455556665  


Q ss_pred             ccCCceeEEEEecCCCCce
Q 017476          346 SACSFCNVSIVSDFAGIQR  364 (371)
Q Consensus       346 ~~~gf~~v~~~~Dl~g~~R  364 (371)
                        ..|..|++.+..+-+.+
T Consensus       174 --~~F~~v~~~KP~aSR~~  190 (205)
T COG0293         174 --RLFRKVKIFKPKASRKR  190 (205)
T ss_pred             --HhhceeEEecCccccCC
Confidence              45999999988776654

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=98.26  E-value=1.1e-05  Score=78.29  Aligned_cols=192  Identities=16%  Similarity=0.182  Sum_probs=123.7

Q ss_pred             CceeeEeecccccceeeEeeCCcccccch----HHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcE
Q 017476          147 KPFQYLVGCEHWRDLVLSVEEGVFIPRPE----TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGS  222 (371)
Q Consensus       147 ~P~~yi~g~~~f~~~~~~v~~~vliPrp~----te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~  222 (371)
                      .|.|.|+-..+=.++.++.+-+.=+..-+    +|.++--.++.+      ....++|-+|.|.|.-+..+.+. +.-.+
T Consensus       243 spYQ~iVvTr~g~d~rLYldG~LQfsTrDe~RYhEsLV~pals~~------~~a~~vLvlGGGDGLAlRellky-P~~~q  315 (508)
T COG4262         243 SPYQRIVVTRRGDDLRLYLDGGLQFSTRDEYRYHESLVYPALSSV------RGARSVLVLGGGDGLALRELLKY-PQVEQ  315 (508)
T ss_pred             CccceEEEEEecCceEEEEcCceeeeechhhhhhheeeecccccc------cccceEEEEcCCchHHHHHHHhC-CCcce
Confidence            45666655444456777777765443322    233332222211      23458999999999999999884 23679


Q ss_pred             EEEEeCCHHHHHHHHHHHHHc-----CC-CCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccc
Q 017476          223 IIAVDLNPLAAAVAAFNAQRY-----GL-QDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRL  296 (371)
Q Consensus       223 V~gvDis~~al~~A~~n~~~~-----gl-~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~  296 (371)
                      |+-||++|++++.+++|....     .+ +.|++++..|.++++....+.||.||.+-|=.....+..+           
T Consensus       316 I~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~DP~tps~~rl-----------  384 (508)
T COG4262         316 ITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLPDPSTPSIGRL-----------  384 (508)
T ss_pred             EEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCCCCCCcchhhh-----------
Confidence            999999999999999765322     12 3589999999999887766799999998664433332211           


Q ss_pred             cccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHH----HHHHHHhccccCCceeE--EEEecCCCCceEEEEE
Q 017476          297 ALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCK----FLKNYLENDSACSFCNV--SIVSDFAGIQRFVTGF  369 (371)
Q Consensus       297 aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~----~v~~~l~~~~~~gf~~v--~~~~Dl~g~~R~~~a~  369 (371)
                                .-.++...+.++|+++|.+++..+......    .+-+-+++   +||...  +++-.-.|..-|+++.
T Consensus       385 ----------YS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~---AG~~~~Pyhv~VPTFGeWGf~l~~  450 (508)
T COG4262         385 ----------YSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKS---AGYRVWPYHVHVPTFGEWGFILAA  450 (508)
T ss_pred             ----------hhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHh---CcceeeeeEEecCcccccceeecc
Confidence                      112455667799999999999885332222    23444553   677643  4445566666666553

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.25  E-value=5.6e-06  Score=78.61  Aligned_cols=91  Identities=22%  Similarity=0.235  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCc
Q 017476          177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSW  256 (371)
Q Consensus       177 e~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~  256 (371)
                      +.+++.+.+.+    +..++..|+|+|+|.|.++..+++..   .+++++|+++..++..++...   ...+++++.+|+
T Consensus        16 ~~~~~~Iv~~~----~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~   85 (262)
T PF00398_consen   16 PNIADKIVDAL----DLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDF   85 (262)
T ss_dssp             HHHHHHHHHHH----TCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-T
T ss_pred             HHHHHHHHHhc----CCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh---hcccceeeecch
Confidence            35666666665    22256799999999999999999972   799999999999998887654   345699999999


Q ss_pred             ccccccC--CCceeEEEEcCCCC
Q 017476          257 FGKLKDV--EGKLSGVVSNPPYI  277 (371)
Q Consensus       257 ~~~l~~~--~~~fDlIvsNPPYi  277 (371)
                      ++.....  ......||+|.||.
T Consensus        86 l~~~~~~~~~~~~~~vv~NlPy~  108 (262)
T PF00398_consen   86 LKWDLYDLLKNQPLLVVGNLPYN  108 (262)
T ss_dssp             TTSCGGGHCSSSEEEEEEEETGT
T ss_pred             hccccHHhhcCCceEEEEEeccc
Confidence            8743321  24678999999993

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=98.23  E-value=9.4e-07  Score=71.80  Aligned_cols=101  Identities=26%  Similarity=0.363  Sum_probs=45.1

Q ss_pred             EEECCcccHHHHHHHHHhCCCc--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCC-CceeEEEEcCCC
Q 017476          200 VDLGTGSGAIAIGIARVLGSKG--SIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVE-GKLSGVVSNPPY  276 (371)
Q Consensus       200 LDlG~GsG~~al~la~~~~~~~--~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~-~~fDlIvsNPPY  276 (371)
                      ||+||..|..++.+++.+.+..  +++++|..+. .+.+++++++.++.+++++++++..+.++... +++|+|+.+-  
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg--   77 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG--   77 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC--
Confidence            6899999999999888764443  7999999996 44556666667777789999999876655443 7899999731  


Q ss_pred             CCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476          277 IPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE  328 (371)
Q Consensus       277 i~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle  328 (371)
                                    .|.           ......-++.+.+.|+|||.+++.
T Consensus        78 --------------~H~-----------~~~~~~dl~~~~~~l~~ggviv~d  104 (106)
T PF13578_consen   78 --------------DHS-----------YEAVLRDLENALPRLAPGGVIVFD  104 (106)
T ss_dssp             ----------------------------HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             --------------CCC-----------HHHHHHHHHHHHHHcCCCeEEEEe
Confidence                          111           234456677888999999998874

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=98.20  E-value=5.3e-05  Score=69.26  Aligned_cols=120  Identities=18%  Similarity=0.246  Sum_probs=98.9

Q ss_pred             CeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCC
Q 017476          197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPY  276 (371)
Q Consensus       197 ~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPY  276 (371)
                      .++.|+||--|.+...+.+. ++...++++|+++..++.|.+|+.++++.++++...+|.+..+.. +..+|.|+-    
T Consensus        18 ~~iaDIGsDHAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~-~d~~d~ivI----   91 (226)
T COG2384          18 ARIADIGSDHAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLEL-EDEIDVIVI----   91 (226)
T ss_pred             CceeeccCchhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCc-cCCcCEEEE----
Confidence            36999999999999999997 578899999999999999999999999999999999999887764 347888775    


Q ss_pred             CCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCce
Q 017476          277 IPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFC  351 (371)
Q Consensus       277 i~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~  351 (371)
                            ..|                  |-..+..|+++..+.|+.--.+++.-  ..+...+++++.+   .+|.
T Consensus        92 ------AGM------------------GG~lI~~ILee~~~~l~~~~rlILQP--n~~~~~LR~~L~~---~~~~  137 (226)
T COG2384          92 ------AGM------------------GGTLIREILEEGKEKLKGVERLILQP--NIHTYELREWLSA---NSYE  137 (226)
T ss_pred             ------eCC------------------cHHHHHHHHHHhhhhhcCcceEEECC--CCCHHHHHHHHHh---CCce
Confidence                  111                  23567789999999888654566655  5788999999997   5663

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.19  E-value=3e-05  Score=75.62  Aligned_cols=138  Identities=13%  Similarity=0.106  Sum_probs=89.3

Q ss_pred             CCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhC---CCcEEEEEeCCHHHHHHHHHHHHHc
Q 017476          167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG---SKGSIIAVDLNPLAAAVAAFNAQRY  243 (371)
Q Consensus       167 ~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~---~~~~V~gvDis~~al~~A~~n~~~~  243 (371)
                      |..+--|.|.+.|-+...+.. ..  ..++..++|+|||+|.-...+.+.+.   .....+++|+|.++|+.+.+++...
T Consensus        51 pEYYptr~E~~iL~~~~~~Ia-~~--i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~  127 (319)
T TIGR03439        51 PEYYLTNDEIEILKKHSSDIA-AS--IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLG  127 (319)
T ss_pred             CccCChHHHHHHHHHHHHHHH-Hh--cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhc
Confidence            444434677777777666554 21  12345899999999987666665542   2467999999999999999998744


Q ss_pred             CCCC-cEEEEEcCcccccccC-----CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhc
Q 017476          244 GLQD-IIEIRQGSWFGKLKDV-----EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTAS  317 (371)
Q Consensus       244 gl~~-~v~~~~gD~~~~l~~~-----~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~  317 (371)
                      ..+. .+.-+.+|+.+.+..+     .....+++.     +       ...+..++|..           ...+++.+.+
T Consensus       128 ~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~f-----l-------GSsiGNf~~~e-----------a~~fL~~~~~  184 (319)
T TIGR03439       128 NFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILW-----L-------GSSIGNFSRPE-----------AAAFLAGFLA  184 (319)
T ss_pred             cCCCeEEEEEEecHHHHHhhcccccccCCccEEEE-----e-------CccccCCCHHH-----------HHHHHHHHHH
Confidence            4442 2455899987653311     122445444     1       12233444433           3368888888


Q ss_pred             -ccccCcEEEEEEC
Q 017476          318 -MLKPGGFFAFETN  330 (371)
Q Consensus       318 -~LkpgG~lvle~~  330 (371)
                       .|+|||.+++-..
T Consensus       185 ~~l~~~d~lLiG~D  198 (319)
T TIGR03439       185 TALSPSDSFLIGLD  198 (319)
T ss_pred             hhCCCCCEEEEecC
Confidence             9999999999764

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.16  E-value=1.9e-05  Score=74.08  Aligned_cols=92  Identities=21%  Similarity=0.343  Sum_probs=65.8

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-CcccccccCCCceeEEEEc
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG-SWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~g-D~~~~l~~~~~~fDlIvsN  273 (371)
                      ...++||||+|.|.++..++..+   .+|++.|+|+.|..    .+++.|.    +++.. ||.+    .+.+||+|.| 
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~----rL~~kg~----~vl~~~~w~~----~~~~fDvIsc-  157 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRW----RLSKKGF----TVLDIDDWQQ----TDFKFDVISC-  157 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHH----HHHhCCC----eEEehhhhhc----cCCceEEEee-
Confidence            45689999999999999999987   57999999998854    4444554    33333 3322    2368999999 


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEE
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF  327 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvl  327 (371)
                              ++-|.   +.+.              ...+++.+++.|+|+|++++
T Consensus       158 --------LNvLD---Rc~~--------------P~~LL~~i~~~l~p~G~lil  186 (265)
T PF05219_consen  158 --------LNVLD---RCDR--------------PLTLLRDIRRALKPNGRLIL  186 (265)
T ss_pred             --------hhhhh---ccCC--------------HHHHHHHHHHHhCCCCEEEE
Confidence                    22222   1222              34788899999999999877

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.16  E-value=1.9e-05  Score=71.79  Aligned_cols=126  Identities=20%  Similarity=0.242  Sum_probs=67.9

Q ss_pred             HHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccc
Q 017476          180 VDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK  259 (371)
Q Consensus       180 v~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~  259 (371)
                      ++.+++++ ..  ..+...|.|+|||.+.++..+.    ...+|+..|+-..              .  -.+...|+.. 
T Consensus        60 vd~iI~~l-~~--~~~~~viaD~GCGdA~la~~~~----~~~~V~SfDLva~--------------n--~~Vtacdia~-  115 (219)
T PF05148_consen   60 VDVIIEWL-KK--RPKSLVIADFGCGDAKLAKAVP----NKHKVHSFDLVAP--------------N--PRVTACDIAN-  115 (219)
T ss_dssp             HHHHHHHH-CT--S-TTS-EEEES-TT-HHHHH------S---EEEEESS-S--------------S--TTEEES-TTS-
T ss_pred             HHHHHHHH-Hh--cCCCEEEEECCCchHHHHHhcc----cCceEEEeeccCC--------------C--CCEEEecCcc-
Confidence            45555555 21  1234689999999999996543    2358999999652              1  2366788843 


Q ss_pred             cccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEE-EEC-CcCcHHH
Q 017476          260 LKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF-ETN-GEKQCKF  337 (371)
Q Consensus       260 l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvl-e~~-~~~q~~~  337 (371)
                      ++-.++.+|++|+.                      ++|-|     ..+..++.+|.+.||+||.|.+ |+. .....+.
T Consensus       116 vPL~~~svDv~Vfc----------------------LSLMG-----Tn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~  168 (219)
T PF05148_consen  116 VPLEDESVDVAVFC----------------------LSLMG-----TNWPDFIREANRVLKPGGILKIAEVKSRFENVKQ  168 (219)
T ss_dssp             -S--TT-EEEEEEE----------------------S---S-----S-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHH
T ss_pred             CcCCCCceeEEEEE----------------------hhhhC-----CCcHHHHHHHHheeccCcEEEEEEecccCcCHHH
Confidence            44345899998873                      22222     2355789999999999999877 552 1123344


Q ss_pred             HHHHHhccccCCceeEEEEecCCC
Q 017476          338 LKNYLENDSACSFCNVSIVSDFAG  361 (371)
Q Consensus       338 v~~~l~~~~~~gf~~v~~~~Dl~g  361 (371)
                      ..+.++   .-||....  +|..+
T Consensus       169 F~~~~~---~~GF~~~~--~d~~n  187 (219)
T PF05148_consen  169 FIKALK---KLGFKLKS--KDESN  187 (219)
T ss_dssp             HHHHHH---CTTEEEEE--EE--S
T ss_pred             HHHHHH---HCCCeEEe--cccCC
Confidence            445555   46886654  45444

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=98.15  E-value=5.7e-05  Score=74.80  Aligned_cols=167  Identities=19%  Similarity=0.165  Sum_probs=110.3

Q ss_pred             CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc-ccCCCceeEE
Q 017476          192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL-KDVEGKLSGV  270 (371)
Q Consensus       192 ~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l-~~~~~~fDlI  270 (371)
                      .+.++.||||+|+-.|.=+..+|..+...+.|+|.|.+..-++..+.|+.++|+.+ ..+...|..+.. ....++||-|
T Consensus       238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~ef~~~~~~~~fDRV  316 (460)
T KOG1122|consen  238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGREFPEKEFPGSFDRV  316 (460)
T ss_pred             CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCcccccccccCccccee
Confidence            44567899999999999988888877778899999999999999999999999876 667777765432 2223489999


Q ss_pred             EEcCCCCCCCCcccchhhhcccCccccccCCCCcH-HHHHHHHHHHhcccccCcEEEEEECC--cCcHHHHH-HHHhccc
Q 017476          271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGL-DYLLHLCNGTASMLKPGGFFAFETNG--EKQCKFLK-NYLENDS  346 (371)
Q Consensus       271 vsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl-~~~~~il~~a~~~LkpgG~lvle~~~--~~q~~~v~-~~l~~~~  346 (371)
                      +.+-|+...+.+..- +.+...+-...+    .-+ ..-++++..|.+.+++||+|+..+-.  ..-.+.+. -.|++. 
T Consensus       317 LLDAPCSGtgvi~K~-~~vkt~k~~~di----~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~-  390 (460)
T KOG1122|consen  317 LLDAPCSGTGVISKD-QSVKTNKTVKDI----LRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKKR-  390 (460)
T ss_pred             eecCCCCCCcccccc-cccccchhHHHH----HHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHhC-
Confidence            999999764433211 111110000000    001 12357999999999999999997632  12234444 444431 


Q ss_pred             cCCceeEEEEecCCCCceEE
Q 017476          347 ACSFCNVSIVSDFAGIQRFV  366 (371)
Q Consensus       347 ~~gf~~v~~~~Dl~g~~R~~  366 (371)
                       -.++-+-...|+.|-.||.
T Consensus       391 -p~~kL~p~~~~iG~~G~~~  409 (460)
T KOG1122|consen  391 -PEVKLVPTGLDIGGEGRFR  409 (460)
T ss_pred             -CceEeccccccCCCCCccc
Confidence             2344555556666655443

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.11  E-value=1.1e-05  Score=73.77  Aligned_cols=132  Identities=15%  Similarity=0.094  Sum_probs=86.0

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ...+.||.|+|.|.++-.+...+  -.+|..||.++..++.|++.+... .....++++..+.+..+. .++||+|.+. 
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f~P~-~~~YDlIW~Q-  129 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDFTPE-EGKYDLIWIQ-  129 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG-----TT-EEEEEEE-
T ss_pred             CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhccCC-CCcEeEEEeh-
Confidence            35689999999999998765432  358999999999999999765431 122357777777555443 4799999982 


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC----C-----------cCcHHHHH
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN----G-----------EKQCKFLK  339 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~----~-----------~~q~~~v~  339 (371)
                                   =+.-|-.          -+++..+++.+...|+|||++++--|    +           .+..+..+
T Consensus       130 -------------W~lghLT----------D~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~  186 (218)
T PF05891_consen  130 -------------WCLGHLT----------DEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFR  186 (218)
T ss_dssp             -------------S-GGGS-----------HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHH
T ss_pred             -------------HhhccCC----------HHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHH
Confidence                         1222322          24456899999999999999999432    1           13467889


Q ss_pred             HHHhccccCCceeEEEEe
Q 017476          340 NYLENDSACSFCNVSIVS  357 (371)
Q Consensus       340 ~~l~~~~~~gf~~v~~~~  357 (371)
                      +++++   +|+.-|+...
T Consensus       187 ~lF~~---AGl~~v~~~~  201 (218)
T PF05891_consen  187 ELFKQ---AGLRLVKEEK  201 (218)
T ss_dssp             HHHHH---CT-EEEEEEE
T ss_pred             HHHHH---cCCEEEEecc
Confidence            99986   7887766543

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.09  E-value=3.6e-05  Score=67.43  Aligned_cols=124  Identities=19%  Similarity=0.189  Sum_probs=89.3

Q ss_pred             chHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 017476          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ  253 (371)
Q Consensus       174 p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~  253 (371)
                      |.+..+++.+...+    +...+..|||+|.|+|.++-++.++-.+...++++|.|++......+..      +.++++.
T Consensus        31 PsSs~lA~~M~s~I----~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~------p~~~ii~  100 (194)
T COG3963          31 PSSSILARKMASVI----DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY------PGVNIIN  100 (194)
T ss_pred             CCcHHHHHHHHhcc----CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC------CCccccc
Confidence            34556666666655    3445668999999999999999886446678999999999987765532      2378999


Q ss_pred             cCccccc---c-cCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          254 GSWFGKL---K-DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       254 gD~~~~l---~-~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      ||.++.-   . .....||.|||--|...-.                        +..-.++++.+...|..||.++--.
T Consensus       101 gda~~l~~~l~e~~gq~~D~viS~lPll~~P------------------------~~~~iaile~~~~rl~~gg~lvqft  156 (194)
T COG3963         101 GDAFDLRTTLGEHKGQFFDSVISGLPLLNFP------------------------MHRRIAILESLLYRLPAGGPLVQFT  156 (194)
T ss_pred             cchhhHHHHHhhcCCCeeeeEEeccccccCc------------------------HHHHHHHHHHHHHhcCCCCeEEEEE
Confidence            9987632   1 2245799999977764211                        2223378899999999999988766


Q ss_pred             CC
Q 017476          330 NG  331 (371)
Q Consensus       330 ~~  331 (371)
                      -|
T Consensus       157 Yg  158 (194)
T COG3963         157 YG  158 (194)
T ss_pred             ec
Confidence            33

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.06  E-value=6.3e-06  Score=73.37  Aligned_cols=69  Identities=25%  Similarity=0.273  Sum_probs=59.6

Q ss_pred             CeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEE
Q 017476          197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS  272 (371)
Q Consensus       197 ~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvs  272 (371)
                      +.+.|||+|||.++...|+.   ..+|+++|.+|...++|.+|+...|..+ ++++.+|....--   +..|+|+|
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~~n-~evv~gDA~~y~f---e~ADvvic  102 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGDVN-WEVVVGDARDYDF---ENADVVIC  102 (252)
T ss_pred             hceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCCcc-eEEEecccccccc---cccceeHH
Confidence            58999999999999998886   3699999999999999999998888754 9999999976421   46899998

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.06  E-value=1e-05  Score=75.19  Aligned_cols=40  Identities=15%  Similarity=0.238  Sum_probs=34.6

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAV  235 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~  235 (371)
                      .++.++||+|||+|.++..+++.  +..+|+|||+++.++..
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~--ga~~v~avD~~~~~l~~  113 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQK--GAKEVYGVDVGYNQLAE  113 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHH
Confidence            35678999999999999999985  45689999999987765

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=98.03  E-value=8.1e-05  Score=67.76  Aligned_cols=117  Identities=17%  Similarity=0.076  Sum_probs=70.6

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcC----------------------------
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYG----------------------------  244 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~g----------------------------  244 (371)
                      ..+-++.|.|||+|.+.-.+.-..+ .-.+|+|.|++++++++|++|+....                            
T Consensus        50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~  129 (246)
T PF11599_consen   50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE  129 (246)
T ss_dssp             -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred             CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence            3566899999999999877765421 12489999999999999999975321                            


Q ss_pred             -------------CCCcEEEEEcCcccccc----cCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHH
Q 017476          245 -------------LQDIIEIRQGSWFGKLK----DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDY  307 (371)
Q Consensus       245 -------------l~~~v~~~~gD~~~~l~----~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~  307 (371)
                                   -.....+.+.|.+++-.    ......|+||.+-||....++..                 +-+-+-
T Consensus       130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g-----------------~~~~~p  192 (246)
T PF11599_consen  130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQG-----------------EGSGGP  192 (246)
T ss_dssp             HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS--------------------HHH
T ss_pred             HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccC-----------------CCCCCc
Confidence                         11126788889887422    11234799999999976554321                 112234


Q ss_pred             HHHHHHHHhcccccCcEEEE
Q 017476          308 LLHLCNGTASMLKPGGFFAF  327 (371)
Q Consensus       308 ~~~il~~a~~~LkpgG~lvl  327 (371)
                      ...+++.....|-.++++++
T Consensus       193 ~~~ml~~l~~vLp~~sVV~v  212 (246)
T PF11599_consen  193 VAQMLNSLAPVLPERSVVAV  212 (246)
T ss_dssp             HHHHHHHHHCCS-TT-EEEE
T ss_pred             HHHHHHHHHhhCCCCcEEEE
Confidence            56899999999966666666

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.02  E-value=6.8e-05  Score=71.72  Aligned_cols=68  Identities=22%  Similarity=0.128  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc
Q 017476          176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY  243 (371)
Q Consensus       176 te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~  243 (371)
                      +...+..++..+........+.+|||+|+|.|....++...++.-.+++++|.|+.++++++.-+...
T Consensus        14 ~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~   81 (274)
T PF09243_consen   14 TYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG   81 (274)
T ss_pred             HHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence            33444444444433334567889999999999988888877744558999999999999998866543

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=98.01  E-value=5.8e-05  Score=67.26  Aligned_cols=136  Identities=18%  Similarity=0.163  Sum_probs=91.0

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-Ccccccc-------cCCCc
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG-SWFGKLK-------DVEGK  266 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~g-D~~~~l~-------~~~~~  266 (371)
                      ++.+|||+||..|+.+..+-+..+|++.|.|||+-.-.           ..+ .+.++++ |+.++..       ....+
T Consensus        69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~-----------p~~-Ga~~i~~~dvtdp~~~~ki~e~lp~r~  136 (232)
T KOG4589|consen   69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE-----------PPE-GATIIQGNDVTDPETYRKIFEALPNRP  136 (232)
T ss_pred             CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc-----------CCC-CcccccccccCCHHHHHHHHHhCCCCc
Confidence            46699999999999999999988899999999985421           122 3667776 6554321       12368


Q ss_pred             eeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccc
Q 017476          267 LSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDS  346 (371)
Q Consensus       267 fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~  346 (371)
                      .|+|+|+----.+      .-..+.|+-.         ++.....+-.+...++|+|.++.-+-...+...+++.|.+  
T Consensus       137 VdvVlSDMapnaT------Gvr~~Dh~~~---------i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~--  199 (232)
T KOG4589|consen  137 VDVVLSDMAPNAT------GVRIRDHYRS---------IELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQA--  199 (232)
T ss_pred             ccEEEeccCCCCc------CcchhhHHHH---------HHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHH--
Confidence            9999995211111      0111222211         3344456667778899999999998655677777777764  


Q ss_pred             cCCceeEEEEecCCC
Q 017476          347 ACSFCNVSIVSDFAG  361 (371)
Q Consensus       347 ~~gf~~v~~~~Dl~g  361 (371)
                        .|+.|++.+.-+.
T Consensus       200 --~f~~Vk~vKP~As  212 (232)
T KOG4589|consen  200 --VFTNVKKVKPDAS  212 (232)
T ss_pred             --HhhhcEeeCCccc
Confidence              4999999876554

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.00  E-value=3.9e-05  Score=65.93  Aligned_cols=96  Identities=24%  Similarity=0.294  Sum_probs=67.1

Q ss_pred             hHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHh---CCCcEEEEEeCCHHHHHHHHHHHHHcC--CCCcE
Q 017476          175 ETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVL---GSKGSIIAVDLNPLAAAVAAFNAQRYG--LQDII  249 (371)
Q Consensus       175 ~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~---~~~~~V~gvDis~~al~~A~~n~~~~g--l~~~v  249 (371)
                      +.+.+++.+...........+...|+|+|||.|.++..++..+   .++.+|+|||.++..++.|.+..+..+  +..++
T Consensus         5 Ei~~~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~   84 (141)
T PF13679_consen    5 EIERMAELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRL   84 (141)
T ss_pred             HHHHHHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccc
Confidence            4455555555544110122356799999999999999999833   257899999999999999999988877  54567


Q ss_pred             EEEEcCcccccccCCCceeEEEE
Q 017476          250 EIRQGSWFGKLKDVEGKLSGVVS  272 (371)
Q Consensus       250 ~~~~gD~~~~l~~~~~~fDlIvs  272 (371)
                      ++..++..+...  ....++++.
T Consensus        85 ~~~~~~~~~~~~--~~~~~~~vg  105 (141)
T PF13679_consen   85 SFIQGDIADESS--SDPPDILVG  105 (141)
T ss_pred             hhhccchhhhcc--cCCCeEEEE
Confidence            777776643322  245666665

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=97.98  E-value=6.8e-05  Score=77.73  Aligned_cols=153  Identities=20%  Similarity=0.169  Sum_probs=90.3

Q ss_pred             CCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhC---CCcEEEEEeCCHHHHHHHHHHHHHc
Q 017476          167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG---SKGSIIAVDLNPLAAAVAAFNAQRY  243 (371)
Q Consensus       167 ~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~---~~~~V~gvDis~~al~~A~~n~~~~  243 (371)
                      .-++.|+...+++++.+....      .+...+.|+.||||.+.+...+...   ....++|.+....+...|+.|+..+
T Consensus       195 g~~~Tp~~Iv~l~~~~~~~~~------dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~  268 (501)
T TIGR00497       195 GEFFTPQDISELLARIAIGKK------DTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILH  268 (501)
T ss_pred             ceeeCcHHHHHHHHHHhccCC------CCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHc
Confidence            335568877777665432111      1235899999999999887655431   1246999999999999999999887


Q ss_pred             CCCC-cEEEEEcCccccccc-CCCceeEEEEcCCCCCCCCcccch---hhhcccCccccccCCCCcHHHHHHHHHHHhcc
Q 017476          244 GLQD-IIEIRQGSWFGKLKD-VEGKLSGVVSNPPYIPSDDISGLQ---VEVGKHEPRLALDGGVDGLDYLLHLCNGTASM  318 (371)
Q Consensus       244 gl~~-~v~~~~gD~~~~l~~-~~~~fDlIvsNPPYi~~~~~~~l~---~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~  318 (371)
                      +... ......+|-+..... ...+||.|++||||...-....++   .....+.-+..-.-...|+.++    ..+...
T Consensus       269 ~~~~~t~~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi----~h~~~~  344 (501)
T TIGR00497       269 NIDYANFNIINADTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFV----LHALYV  344 (501)
T ss_pred             CCCccccCcccCCcCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHH----HHHHHh
Confidence            7642 244445554442111 124699999999996421111111   1111111010000123344444    445578


Q ss_pred             cccCcEEEEEE
Q 017476          319 LKPGGFFAFET  329 (371)
Q Consensus       319 LkpgG~lvle~  329 (371)
                      |++||...+..
T Consensus       345 L~~gG~~aiI~  355 (501)
T TIGR00497       345 LGQEGTAAIVC  355 (501)
T ss_pred             cCCCCeEEEEe
Confidence            99999876655

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.97  E-value=0.00018  Score=68.63  Aligned_cols=149  Identities=17%  Similarity=0.184  Sum_probs=76.1

Q ss_pred             CCCeEEEECCcc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH-HcCCCCcEEEEEcCcccccccCCCceeEEEE
Q 017476          195 RDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ-RYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS  272 (371)
Q Consensus       195 ~~~~VLDlG~Gs-G~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~-~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvs  272 (371)
                      .+.+|+=+|+|. -..++.+++...++..|+++|++++|++.|++-+. ..|+..+++|+.+|..+...+ -..||+|+.
T Consensus       120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~d-l~~~DvV~l  198 (276)
T PF03059_consen  120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYD-LKEYDVVFL  198 (276)
T ss_dssp             ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG-----SEEEE
T ss_pred             ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccc-cccCCEEEE
Confidence            356999999995 45566677655567889999999999999998777 567788899999998764333 258999886


Q ss_pred             cCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC-CcCcHHHHHHHHhccccCCce
Q 017476          273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN-GEKQCKFLKNYLENDSACSFC  351 (371)
Q Consensus       273 NPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~-~~~q~~~v~~~l~~~~~~gf~  351 (371)
                      .                       |+.|....  .=.++++...++++||..+++=.. |.++  -+-....-..-.||.
T Consensus       199 A-----------------------alVg~~~e--~K~~Il~~l~~~m~~ga~l~~Rsa~GlR~--~LYp~vd~~~l~gf~  251 (276)
T PF03059_consen  199 A-----------------------ALVGMDAE--PKEEILEHLAKHMAPGARLVVRSAHGLRS--FLYPVVDPEDLRGFE  251 (276)
T ss_dssp             ------------------------TT-S------SHHHHHHHHHHHS-TTSEEEEEE--GGGG--GSS----TGGGTTEE
T ss_pred             h-----------------------hhcccccc--hHHHHHHHHHhhCCCCcEEEEecchhhHH--HcCCCCChHHCCCeE
Confidence            1                       11211100  112688888999999999888542 2211  011111111124787


Q ss_pred             eEEEEecCC-CCceEEEEEeC
Q 017476          352 NVSIVSDFA-GIQRFVTGFRQ  371 (371)
Q Consensus       352 ~v~~~~Dl~-g~~R~~~a~~~  371 (371)
                      ...++.... =+.-+++++|.
T Consensus       252 ~~~~~hP~~~ViNSvv~~rk~  272 (276)
T PF03059_consen  252 VLAVVHPTDEVINSVVFARKK  272 (276)
T ss_dssp             EEEEE---TT---EEEEE---
T ss_pred             EEEEECCCCCceeEEEEEEec
Confidence            755544332 35567777763

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.95  E-value=3.2e-05  Score=65.88  Aligned_cols=59  Identities=20%  Similarity=0.242  Sum_probs=52.7

Q ss_pred             eEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccc
Q 017476          198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG  258 (371)
Q Consensus       198 ~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~  258 (371)
                      .++|+|||.|.++..+++.. +..+|+++|.++.+.+.+++|++.+++++ +++++..+.+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~~~~-v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNNLPN-VVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEEeeeeC
Confidence            48999999999999999874 77799999999999999999999998865 9999887754

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=97.94  E-value=3.6e-05  Score=70.51  Aligned_cols=80  Identities=21%  Similarity=0.295  Sum_probs=51.8

Q ss_pred             CCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH-------cCC-CCcEEEEEcCccccc--cc
Q 017476          193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR-------YGL-QDIIEIRQGSWFGKL--KD  262 (371)
Q Consensus       193 ~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~-------~gl-~~~v~~~~gD~~~~l--~~  262 (371)
                      ..+...++|||||.|...+.+|... +-.+.+|||+.+...+.|+.+.+.       .|. ..++++.++|+.+..  ..
T Consensus        40 l~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~  118 (205)
T PF08123_consen   40 LTPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKD  118 (205)
T ss_dssp             --TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHH
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhh
Confidence            3456799999999999998888775 445699999999999888765543       233 346899999987642  11


Q ss_pred             CCCceeEEEEc
Q 017476          263 VEGKLSGVVSN  273 (371)
Q Consensus       263 ~~~~fDlIvsN  273 (371)
                      .....|+|++|
T Consensus       119 ~~s~AdvVf~N  129 (205)
T PF08123_consen  119 IWSDADVVFVN  129 (205)
T ss_dssp             HGHC-SEEEE-
T ss_pred             hhcCCCEEEEe
Confidence            11357999997

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.90  E-value=0.00034  Score=66.93  Aligned_cols=90  Identities=22%  Similarity=0.436  Sum_probs=69.4

Q ss_pred             HHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcc
Q 017476          178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF  257 (371)
Q Consensus       178 ~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~  257 (371)
                      .|++.+++.+    ...+++..+|.--|.|..+..+...+++.++++|+|.++.|++.|++.+..++  +++.++++++.
T Consensus        10 VLl~E~i~~L----~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~   83 (314)
T COG0275          10 VLLNEVVELL----APKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFA   83 (314)
T ss_pred             hHHHHHHHhc----ccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHH
Confidence            4556666665    34456899999999999999999998667789999999999999999987765  67999999874


Q ss_pred             cccc---cC-CCceeEEEEc
Q 017476          258 GKLK---DV-EGKLSGVVSN  273 (371)
Q Consensus       258 ~~l~---~~-~~~fDlIvsN  273 (371)
                      +...   .. .+++|.|+.+
T Consensus        84 ~l~~~l~~~~i~~vDGiL~D  103 (314)
T COG0275          84 NLAEALKELGIGKVDGILLD  103 (314)
T ss_pred             HHHHHHHhcCCCceeEEEEe
Confidence            4211   11 3567777664

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.90  E-value=0.0017  Score=59.81  Aligned_cols=148  Identities=14%  Similarity=0.130  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCc
Q 017476          177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSW  256 (371)
Q Consensus       177 e~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~  256 (371)
                      ..|...++.-+ ......++.+||-||..+|...-.++.-.++.+.|+|||.|+......-.-+++.   .+|-.+.+|.
T Consensus        56 SKLaAai~~Gl-~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DA  131 (229)
T PF01269_consen   56 SKLAAAILKGL-ENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDA  131 (229)
T ss_dssp             -HHHHHHHTT--S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-T
T ss_pred             hHHHHHHHcCc-cccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccC
Confidence            34555554443 2223456789999999999999999998877899999999996654433222222   3488889998


Q ss_pred             cccccc--CCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC----
Q 017476          257 FGKLKD--VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN----  330 (371)
Q Consensus       257 ~~~l~~--~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~----  330 (371)
                      ..+...  .-+.+|+|+++=.                 .|           +..+-++.++..+||+||.+++.+.    
T Consensus       132 r~P~~Y~~lv~~VDvI~~DVa-----------------Qp-----------~Qa~I~~~Na~~fLk~gG~~~i~iKa~si  183 (229)
T PF01269_consen  132 RHPEKYRMLVEMVDVIFQDVA-----------------QP-----------DQARIAALNARHFLKPGGHLIISIKARSI  183 (229)
T ss_dssp             TSGGGGTTTS--EEEEEEE-S-----------------ST-----------THHHHHHHHHHHHEEEEEEEEEEEEHHHH
T ss_pred             CChHHhhcccccccEEEecCC-----------------Ch-----------HHHHHHHHHHHhhccCCcEEEEEEecCcc
Confidence            766432  2468999998411                 11           1233567788889999999998762    


Q ss_pred             -C-cCcHHHHHHHHhccccCCceeEEEE
Q 017476          331 -G-EKQCKFLKNYLENDSACSFCNVSIV  356 (371)
Q Consensus       331 -~-~~q~~~v~~~l~~~~~~gf~~v~~~  356 (371)
                       . ....+.+.+..+.....+|.-++..
T Consensus       184 D~t~~p~~vf~~e~~~L~~~~~~~~e~i  211 (229)
T PF01269_consen  184 DSTADPEEVFAEEVKKLKEEGFKPLEQI  211 (229)
T ss_dssp             -SSSSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             cCcCCHHHHHHHHHHHHHHcCCChheEe
Confidence             1 1222223333333334678665544

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.88  E-value=4.2e-05  Score=68.63  Aligned_cols=73  Identities=26%  Similarity=0.453  Sum_probs=62.7

Q ss_pred             CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEE
Q 017476          192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV  271 (371)
Q Consensus       192 ~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIv  271 (371)
                      +...+++|||+|+|+|..+++.++.  ....|++.|+.+.....++.|++.||..  +.+...|...  .  +..||+|+
T Consensus        76 etVrgkrVLd~gagsgLvaIAaa~a--GA~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~~g--~--~~~~Dl~L  147 (218)
T COG3897          76 ETVRGKRVLDLGAGSGLVAIAAARA--GAAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADLIG--S--PPAFDLLL  147 (218)
T ss_pred             cccccceeeecccccChHHHHHHHh--hhHHHHhcCCChHHHHHhhcchhhccce--eEEeeccccC--C--CcceeEEE
Confidence            4557889999999999999999986  4578999999999999999999999965  8999988754  2  36899998


Q ss_pred             E
Q 017476          272 S  272 (371)
Q Consensus       272 s  272 (371)
                      .
T Consensus       148 a  148 (218)
T COG3897         148 A  148 (218)
T ss_pred             e
Confidence            7

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.79  E-value=2.2e-05  Score=68.30  Aligned_cols=151  Identities=15%  Similarity=0.146  Sum_probs=94.5

Q ss_pred             chHHHHHHHHHHHhhhcCCCCCCCeEEEECCc-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC--CcEE
Q 017476          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ--DIIE  250 (371)
Q Consensus       174 p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~G-sG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~--~~v~  250 (371)
                      |..|.+.-.+++..    ....+.+||++|.| +|.-++.+|... +...|...|-+.++++..++-...+-..  .++.
T Consensus        12 pseeala~~~l~~~----n~~rg~~ilelgggft~laglmia~~a-~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~   86 (201)
T KOG3201|consen   12 PSEEALAWTILRDP----NKIRGRRILELGGGFTGLAGLMIACKA-PDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCC   86 (201)
T ss_pred             ccHHHHHHHHHhch----hHHhHHHHHHhcCchhhhhhhheeeec-CCceEEEecCCHHHHHHHHHHHhcccccccceeh
Confidence            44566666555433    33456799999999 566677777764 7889999999999998887766555221  1233


Q ss_pred             EEEcCccccccc-CCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          251 IRQGSWFGKLKD-VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       251 ~~~gD~~~~l~~-~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      .+.-++...-.. ....||+|++              .+..-|            -+.-..+++.+..+|+|.|..++-.
T Consensus        87 vlrw~~~~aqsq~eq~tFDiIla--------------ADClFf------------dE~h~sLvdtIk~lL~p~g~Al~fs  140 (201)
T KOG3201|consen   87 VLRWLIWGAQSQQEQHTFDIILA--------------ADCLFF------------DEHHESLVDTIKSLLRPSGRALLFS  140 (201)
T ss_pred             hhHHHHhhhHHHHhhCcccEEEe--------------ccchhH------------HHHHHHHHHHHHHHhCcccceeEec
Confidence            333333322111 1248999998              112111            1223467888899999999977766


Q ss_pred             CCcCcHHHHHHHHhccccCCceeEEEEec
Q 017476          330 NGEKQCKFLKNYLENDSACSFCNVSIVSD  358 (371)
Q Consensus       330 ~~~~q~~~v~~~l~~~~~~gf~~v~~~~D  358 (371)
                      +  +.++.+.+++...+..|| .|.+..+
T Consensus       141 P--RRg~sL~kF~de~~~~gf-~v~l~en  166 (201)
T KOG3201|consen  141 P--RRGQSLQKFLDEVGTVGF-TVCLEEN  166 (201)
T ss_pred             C--cccchHHHHHHHHHhcee-EEEeccc
Confidence            3  455666666665555777 3444443

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=97.77  E-value=0.00013  Score=70.62  Aligned_cols=90  Identities=21%  Similarity=0.365  Sum_probs=70.5

Q ss_pred             HHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcc
Q 017476          178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF  257 (371)
Q Consensus       178 ~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~  257 (371)
                      .|.+.+++.+    ...+++.++|.-+|.|..+..+++.+ ++++|+|+|.++.|++.|++++..+  .++++++++++.
T Consensus         7 Vll~Evl~~L----~~~~ggiyVD~TlG~GGHS~~iL~~l-~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~   79 (305)
T TIGR00006         7 VLLDEVVEGL----NIKPDGIYIDCTLGFGGHSKAILEQL-GTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFA   79 (305)
T ss_pred             hhHHHHHHhc----CcCCCCEEEEeCCCChHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHH
Confidence            5667777766    23356799999999999999999987 4589999999999999999988755  467999999986


Q ss_pred             cccccC----CCceeEEEEcC
Q 017476          258 GKLKDV----EGKLSGVVSNP  274 (371)
Q Consensus       258 ~~l~~~----~~~fDlIvsNP  274 (371)
                      +.....    ..++|.|+.|-
T Consensus        80 ~l~~~l~~~~~~~vDgIl~DL  100 (305)
T TIGR00006        80 NFFEHLDELLVTKIDGILVDL  100 (305)
T ss_pred             HHHHHHHhcCCCcccEEEEec
Confidence            532211    24688888874

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=97.76  E-value=8.6e-05  Score=74.10  Aligned_cols=104  Identities=20%  Similarity=0.214  Sum_probs=79.5

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEEEcCcccccccCCCceeEEEEcC
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQD-IIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~-~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      +.++||.=+|||.=++..+.++....+|++-|+|+++++.+++|++.|++++ ++++.+.|....+......||+|=.+|
T Consensus        50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlDP  129 (377)
T PF02005_consen   50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLDP  129 (377)
T ss_dssp             -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred             CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeCC
Confidence            4589999999999999999996455689999999999999999999999988 799999998665432347899998763


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                       |..                             ...+++.|.+.++.||.|.+..
T Consensus       130 -fGS-----------------------------p~pfldsA~~~v~~gGll~vTa  154 (377)
T PF02005_consen  130 -FGS-----------------------------PAPFLDSALQAVKDGGLLCVTA  154 (377)
T ss_dssp             -SS-------------------------------HHHHHHHHHHEEEEEEEEEEE
T ss_pred             -CCC-----------------------------ccHhHHHHHHHhhcCCEEEEec
Confidence             321                             1268888889999999999975

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=97.70  E-value=0.00092  Score=63.97  Aligned_cols=75  Identities=16%  Similarity=0.141  Sum_probs=56.4

Q ss_pred             eEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccC-CCceeEEEEcCCC
Q 017476          198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV-EGKLSGVVSNPPY  276 (371)
Q Consensus       198 ~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~-~~~fDlIvsNPPY  276 (371)
                      +++|++||.|.+...+.+.  .-..|.++|+++.+++..+.|...       .++.+|+.+..... .+.+|+|+..||+
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~--G~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~~~~~~D~l~~gpPC   72 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKA--GFEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKDFIPDIDLLTGGFPC   72 (275)
T ss_pred             cEEEEccCcchHHHHHHHc--CCEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhhcCCCCCEEEeCCCC
Confidence            6999999999999888774  234688999999999999888631       15667765543221 3579999999999


Q ss_pred             CCCCC
Q 017476          277 IPSDD  281 (371)
Q Consensus       277 i~~~~  281 (371)
                      -+.+.
T Consensus        73 q~fS~   77 (275)
T cd00315          73 QPFSI   77 (275)
T ss_pred             hhhhH
Confidence            65433

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=97.64  E-value=0.00025  Score=66.28  Aligned_cols=107  Identities=18%  Similarity=0.227  Sum_probs=69.1

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ....|.|+|||-+-++.   .   ...+|+..|+-..                +-+++..|+.+ ++-.+++.|++|+. 
T Consensus       180 ~~~vIaD~GCGEakiA~---~---~~~kV~SfDL~a~----------------~~~V~~cDm~~-vPl~d~svDvaV~C-  235 (325)
T KOG3045|consen  180 KNIVIADFGCGEAKIAS---S---ERHKVHSFDLVAV----------------NERVIACDMRN-VPLEDESVDVAVFC-  235 (325)
T ss_pred             CceEEEecccchhhhhh---c---cccceeeeeeecC----------------CCceeeccccC-CcCccCcccEEEee-
Confidence            35689999999999886   2   2357999998541                14577788865 44446899998872 


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCcee
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCN  352 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~  352 (371)
                                           ++|.|     ..+..++.+|.++|++||.+++---. .....+..+.+....-||..
T Consensus       236 ---------------------LSLMg-----tn~~df~kEa~RiLk~gG~l~IAEv~-SRf~dv~~f~r~l~~lGF~~  286 (325)
T KOG3045|consen  236 ---------------------LSLMG-----TNLADFIKEANRILKPGGLLYIAEVK-SRFSDVKGFVRALTKLGFDV  286 (325)
T ss_pred             ---------------------Hhhhc-----ccHHHHHHHHHHHhccCceEEEEehh-hhcccHHHHHHHHHHcCCee
Confidence                                 11111     23557899999999999999884312 22233333333322367854

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=97.59  E-value=0.00034  Score=64.02  Aligned_cols=137  Identities=18%  Similarity=0.181  Sum_probs=90.0

Q ss_pred             hHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q 017476          175 ETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG  254 (371)
Q Consensus       175 ~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~g  254 (371)
                      .+..+++|+.+............++||+||=+....+.....    -.|+.||+++.-                -.+.+.
T Consensus        31 SSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~~----fdvt~IDLns~~----------------~~I~qq   90 (219)
T PF11968_consen   31 SSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSGW----FDVTRIDLNSQH----------------PGILQQ   90 (219)
T ss_pred             hhHHHHHHhhhhccccccccccceEEeecccCCCCcccccCc----eeeEEeecCCCC----------------CCceee
Confidence            346677777765522112223469999999877666554333    469999998821                357788


Q ss_pred             Ccccc-cc-cCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcE-----EEE
Q 017476          255 SWFGK-LK-DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGF-----FAF  327 (371)
Q Consensus       255 D~~~~-l~-~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~-----lvl  327 (371)
                      |+++. ++ ...++||+|++              .-|..|-|....-         -+++..+.++|+++|.     |++
T Consensus        91 DFm~rplp~~~~e~FdvIs~--------------SLVLNfVP~p~~R---------G~Ml~r~~~fL~~~g~~~~~~LFl  147 (219)
T PF11968_consen   91 DFMERPLPKNESEKFDVISL--------------SLVLNFVPDPKQR---------GEMLRRAHKFLKPPGLSLFPSLFL  147 (219)
T ss_pred             ccccCCCCCCcccceeEEEE--------------EEEEeeCCCHHHH---------HHHHHHHHHHhCCCCccCcceEEE
Confidence            88773 33 22578999988              2234444433222         1688999999999999     888


Q ss_pred             EEC-------CcCcHHHHHHHHhccccCCceeEEEEe
Q 017476          328 ETN-------GEKQCKFLKNYLENDSACSFCNVSIVS  357 (371)
Q Consensus       328 e~~-------~~~q~~~v~~~l~~~~~~gf~~v~~~~  357 (371)
                      ..+       .+-..+.+..+|..   -||..++...
T Consensus       148 VlP~~Cv~NSRy~~~~~l~~im~~---LGf~~~~~~~  181 (219)
T PF11968_consen  148 VLPLPCVTNSRYMTEERLREIMES---LGFTRVKYKK  181 (219)
T ss_pred             EeCchHhhcccccCHHHHHHHHHh---CCcEEEEEEe
Confidence            764       23345677888886   6898887643

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.48  E-value=0.0022  Score=52.08  Aligned_cols=102  Identities=25%  Similarity=0.316  Sum_probs=66.4

Q ss_pred             EEEECCcccHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccc-cccCC-CceeEEEEcCC
Q 017476          199 WVDLGTGSGAIAIGIARVLGSK-GSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK-LKDVE-GKLSGVVSNPP  275 (371)
Q Consensus       199 VLDlG~GsG~~al~la~~~~~~-~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~-l~~~~-~~fDlIvsNPP  275 (371)
                      ++|+|||+|... .++... .. ..++|+|+++.++..++.+....+.. .+.+..+|.... ..... ..||++.+...
T Consensus        52 ~ld~~~g~g~~~-~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  128 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLG-GRGAYVVGVDLSPEMLALARARAEGAGLG-LVDFVVADALGGVLPFEDSASFDLVISLLV  128 (257)
T ss_pred             eEEecCCcCHHH-HHHHhC-CCCceEEEEeCCHHHHHHHHhhhhhcCCC-ceEEEEeccccCCCCCCCCCceeEEeeeee
Confidence            999999999977 444432 22 48999999999999855554332211 167888887652 33222 37999844221


Q ss_pred             CCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC
Q 017476          276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN  330 (371)
Q Consensus       276 Yi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~  330 (371)
                      ..              +.            . ....+..+.+.|+++|.+++...
T Consensus       129 ~~--------------~~------------~-~~~~~~~~~~~l~~~g~~~~~~~  156 (257)
T COG0500         129 LH--------------LL------------P-PAKALRELLRVLKPGGRLVLSDL  156 (257)
T ss_pred             hh--------------cC------------C-HHHHHHHHHHhcCCCcEEEEEec
Confidence            11              00            0 23677788899999999988774

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=97.45  E-value=0.0004  Score=62.77  Aligned_cols=128  Identities=20%  Similarity=0.247  Sum_probs=81.8

Q ss_pred             CeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC------CCCcEEEEEcCcccccccC--CCcee
Q 017476          197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG------LQDIIEIRQGSWFGKLKDV--EGKLS  268 (371)
Q Consensus       197 ~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~g------l~~~v~~~~gD~~~~l~~~--~~~fD  268 (371)
                      -.+.|||||-|.+.+.++-.+ |+.-+.|+||-....++.+..++..+      .-.++.++..+.+..++..  .++.+
T Consensus        62 vefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs  140 (249)
T KOG3115|consen   62 VEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS  140 (249)
T ss_pred             ceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence            469999999999999999987 89999999999999998888887664      2234788888877766543  23333


Q ss_pred             EEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHh
Q 017476          269 GVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLE  343 (371)
Q Consensus       269 lIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~  343 (371)
                      -++.--|     + .+...  ..|.-++          ....++....-.|++||.++..+.-....+.+...++
T Consensus       141 kmff~fp-----d-pHfk~--~khk~ri----------i~~~l~~eyay~l~~gg~~ytitDv~elh~wm~~~~e  197 (249)
T KOG3115|consen  141 KMFFLFP-----D-PHFKA--RKHKWRI----------ITSTLLSEYAYVLREGGILYTITDVKELHEWMVKHLE  197 (249)
T ss_pred             cceeecC-----C-hhHhh--hhcccee----------echhHHHHHHhhhhcCceEEEEeeHHHHHHHHHHHHH
Confidence            2222101     0 00000  0111111          1225666667789999999998854344444444444

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.45  E-value=0.0013  Score=62.23  Aligned_cols=138  Identities=18%  Similarity=0.217  Sum_probs=82.0

Q ss_pred             CCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC-------------C-------------
Q 017476          193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGL-------------Q-------------  246 (371)
Q Consensus       193 ~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl-------------~-------------  246 (371)
                      ..++.++||+|||.-..-+.-|..+  -.+|+..|..+..++..++-++.-+-             +             
T Consensus        54 ~~~g~~llDiGsGPtiy~~lsa~~~--f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~l  131 (256)
T PF01234_consen   54 GVKGETLLDIGSGPTIYQLLSACEW--FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKL  131 (256)
T ss_dssp             SS-EEEEEEES-TT--GGGTTGGGT--EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHH
T ss_pred             CcCCCEEEEeCCCcHHHhhhhHHHh--hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHH
Confidence            3456799999999865433323221  25799999999988876665433211             0             


Q ss_pred             -CcE-EEEEcCcccccc--c---CCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhccc
Q 017476          247 -DII-EIRQGSWFGKLK--D---VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASML  319 (371)
Q Consensus       247 -~~v-~~~~gD~~~~l~--~---~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~L  319 (371)
                       ..| +++..|..+.-+  .   ...+||+|++-         --+...             -.-++.|+..+++..++|
T Consensus       132 R~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~---------fcLE~a-------------~~d~~~y~~al~ni~~lL  189 (256)
T PF01234_consen  132 RRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISS---------FCLESA-------------CKDLDEYRRALRNISSLL  189 (256)
T ss_dssp             HHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEE---------SSHHHH--------------SSHHHHHHHHHHHHTTE
T ss_pred             HHhhceEEEeeccCCCCCCccccCccchhhhhhh---------HHHHHH-------------cCCHHHHHHHHHHHHHHc
Confidence             113 377788766322  1   12359999881         111111             112678999999999999


Q ss_pred             ccCcEEEEEEC---------C------cCcHHHHHHHHhccccCCceeEEEEe
Q 017476          320 KPGGFFAFETN---------G------EKQCKFLKNYLENDSACSFCNVSIVS  357 (371)
Q Consensus       320 kpgG~lvle~~---------~------~~q~~~v~~~l~~~~~~gf~~v~~~~  357 (371)
                      ||||.|++...         +      .-..+.|++.+++   .||.-++..+
T Consensus       190 kpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~---aG~~i~~~~~  239 (256)
T PF01234_consen  190 KPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEE---AGFDIEDLEK  239 (256)
T ss_dssp             EEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHH---TTEEEEEEEG
T ss_pred             CCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHH---cCCEEEeccc
Confidence            99999998431         1      1246778888886   7896665554

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.44  E-value=0.00096  Score=65.44  Aligned_cols=102  Identities=14%  Similarity=0.161  Sum_probs=80.3

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCC
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP  275 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPP  275 (371)
                      +.+|+|.-+|||.=++..|.+. +..+|+.-|+||+|++.+++|++.|...+ ...+..|....+......||+|=.+| 
T Consensus        53 ~~~v~DalsatGiRgIRya~E~-~~~~v~lNDisp~Avelik~Nv~~N~~~~-~~v~n~DAN~lm~~~~~~fd~IDiDP-  129 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVET-GVVKVVLNDISPKAVELIKENVRLNSGED-AEVINKDANALLHELHRAFDVIDIDP-  129 (380)
T ss_pred             CeEEeecccccchhHhhhhhhc-CccEEEEccCCHHHHHHHHHHHHhcCccc-ceeecchHHHHHHhcCCCccEEecCC-
Confidence            5699999999999999999996 44599999999999999999999995444 56666887665554457899887653 


Q ss_pred             CCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       276 Yi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      |...                             -.+++.|.+.++.||.+.+..
T Consensus       130 FGSP-----------------------------aPFlDaA~~s~~~~G~l~vTA  154 (380)
T COG1867         130 FGSP-----------------------------APFLDAALRSVRRGGLLCVTA  154 (380)
T ss_pred             CCCC-----------------------------chHHHHHHHHhhcCCEEEEEe
Confidence            3221                             157777888889999999864

>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]

Probab=97.43  E-value=0.00043  Score=56.64  Aligned_cols=65  Identities=28%  Similarity=0.449  Sum_probs=45.5

Q ss_pred             ceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC-----CcCcHHHHHH
Q 017476          266 KLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN-----GEKQCKFLKN  340 (371)
Q Consensus       266 ~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~-----~~~q~~~v~~  340 (371)
                      +||+||.||||+............            ....+.|..+++.+.++|  +|.+.+.++     ....+..+++
T Consensus         2 kFD~VIGNPPY~~~~~~~~~~~~~------------~~~~dlY~~Fie~~~~ll--~G~~~~I~P~~~l~~~~~~~~lR~   67 (106)
T PF07669_consen    2 KFDVVIGNPPYIKIKSLSKKKKKK------------KKKSDLYILFIEKSLNLL--NGYLSFITPNSFLKSGKYGKKLRK   67 (106)
T ss_pred             CcCEEEECCCChhhccccchhhcc------------cccCcHHHHHHHHHHHHh--CCeEEEEeChHHhCcCchHHHHHH
Confidence            699999999999765432211110            114678889999999988  999988774     2345677788


Q ss_pred             HHhc
Q 017476          341 YLEN  344 (371)
Q Consensus       341 ~l~~  344 (371)
                      .+.+
T Consensus        68 ~l~~   71 (106)
T PF07669_consen   68 FLLN   71 (106)
T ss_pred             HHhc
Confidence            8764

The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=97.41  E-value=0.0014  Score=59.77  Aligned_cols=105  Identities=19%  Similarity=0.295  Sum_probs=78.6

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccC-CCceeEEEEc
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV-EGKLSGVVSN  273 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~-~~~fDlIvsN  273 (371)
                      ++++||.+|-|-|.+.-.+-.+ .| .+=+-+|.+++.++..+++.-..  .++|.++.|-|.+.++.+ ++.||.|.-+
T Consensus       101 kggrvLnVGFGMgIidT~iQe~-~p-~~H~IiE~hp~V~krmr~~gw~e--k~nViil~g~WeDvl~~L~d~~FDGI~yD  176 (271)
T KOG1709|consen  101 KGGRVLNVGFGMGIIDTFIQEA-PP-DEHWIIEAHPDVLKRMRDWGWRE--KENVIILEGRWEDVLNTLPDKHFDGIYYD  176 (271)
T ss_pred             CCceEEEeccchHHHHHHHhhc-CC-cceEEEecCHHHHHHHHhccccc--ccceEEEecchHhhhccccccCcceeEee
Confidence            5779999999999998888765 34 45566899999998887764322  346999999998766544 5679999863


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                                       .|.|         -.++++++.+.+.++|||+|++-+-.
T Consensus       177 -----------------Ty~e---------~yEdl~~~hqh~~rLLkP~gv~SyfN  206 (271)
T KOG1709|consen  177 -----------------TYSE---------LYEDLRHFHQHVVRLLKPEGVFSYFN  206 (271)
T ss_pred             -----------------chhh---------HHHHHHHHHHHHhhhcCCCceEEEec
Confidence                             1111         13566788889999999999987765

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=97.36  E-value=0.0002  Score=65.34  Aligned_cols=136  Identities=19%  Similarity=0.278  Sum_probs=68.7

Q ss_pred             chHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHH---hCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 017476          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARV---LGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIE  250 (371)
Q Consensus       174 p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~---~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~  250 (371)
                      |..-...+.++-.+       +|..|+++|+-.|.-++..|..   +++.++|+|||++........  .+.+.+.++|+
T Consensus        18 P~Dm~~~qeli~~~-------kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a--~e~hp~~~rI~   88 (206)
T PF04989_consen   18 PQDMVAYQELIWEL-------KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKA--IESHPMSPRIT   88 (206)
T ss_dssp             HHHHHHHHHHHHHH---------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-G--GGG----TTEE
T ss_pred             HHHHHHHHHHHHHh-------CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHH--HhhccccCceE
Confidence            44444445554444       4779999999999988887754   346789999999654432221  22344567899


Q ss_pred             EEEcCccccc-----ccC--CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCc
Q 017476          251 IRQGSWFGKL-----KDV--EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGG  323 (371)
Q Consensus       251 ~~~gD~~~~l-----~~~--~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG  323 (371)
                      +++||..+.-     ...  .....+|+-+        -++                   -.+.....++.-..++++|+
T Consensus        89 ~i~Gds~d~~~~~~v~~~~~~~~~vlVilD--------s~H-------------------~~~hvl~eL~~y~plv~~G~  141 (206)
T PF04989_consen   89 FIQGDSIDPEIVDQVRELASPPHPVLVILD--------SSH-------------------THEHVLAELEAYAPLVSPGS  141 (206)
T ss_dssp             EEES-SSSTHHHHTSGSS----SSEEEEES--------S-----------------------SSHHHHHHHHHHT--TT-
T ss_pred             EEECCCCCHHHHHHHHHhhccCCceEEEEC--------CCc-------------------cHHHHHHHHHHhCccCCCCC
Confidence            9999986531     111  1233355431        111                   11222345555678999999


Q ss_pred             EEEEEEC-----------------CcCcHHHHHHHHhcc
Q 017476          324 FFAFETN-----------------GEKQCKFLKNYLEND  345 (371)
Q Consensus       324 ~lvle~~-----------------~~~q~~~v~~~l~~~  345 (371)
                      ++++|-.                 |.....++.++|++.
T Consensus       142 Y~IVeDt~~~~~~~~~~~~~~w~~g~~p~~av~~fL~~~  180 (206)
T PF04989_consen  142 YLIVEDTIIEDWPESWFPDRPWGPGNNPKTAVKEFLAEH  180 (206)
T ss_dssp             EEEETSHHHHHHHHS-------------HHHHHHHHHTT
T ss_pred             EEEEEeccccccccccccccchhhhhHHHHHHHHHHHHC
Confidence            9999632                 234567788999874

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=97.35  E-value=0.00032  Score=64.54  Aligned_cols=111  Identities=17%  Similarity=0.082  Sum_probs=72.2

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCC
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP  275 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPP  275 (371)
                      ...++|+|||-|++...+..+  .-.+++-+|.|-.|++.++.. +..++.  +....+|- +.+...+.++|+|++.--
T Consensus        73 fp~a~diGcs~G~v~rhl~~e--~vekli~~DtS~~M~~s~~~~-qdp~i~--~~~~v~DE-E~Ldf~ens~DLiisSls  146 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGE--GVEKLIMMDTSYDMIKSCRDA-QDPSIE--TSYFVGDE-EFLDFKENSVDLIISSLS  146 (325)
T ss_pred             CcceeecccchhhhhHHHHhc--chhheeeeecchHHHHHhhcc-CCCceE--EEEEecch-hcccccccchhhhhhhhh
Confidence            348999999999999998876  356899999999999987753 222322  45555663 344444578999998544


Q ss_pred             CCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHH
Q 017476          276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFL  338 (371)
Q Consensus       276 Yi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v  338 (371)
                      -.+.++++                          ..+.++...|||+|.++-.+-|.+...++
T Consensus       147 lHW~NdLP--------------------------g~m~~ck~~lKPDg~FiasmlggdTLyEL  183 (325)
T KOG2940|consen  147 LHWTNDLP--------------------------GSMIQCKLALKPDGLFIASMLGGDTLYEL  183 (325)
T ss_pred             hhhhccCc--------------------------hHHHHHHHhcCCCccchhHHhccccHHHH
Confidence            33333322                          34455667777777776655443433333

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=97.35  E-value=0.0042  Score=61.03  Aligned_cols=167  Identities=14%  Similarity=0.170  Sum_probs=102.3

Q ss_pred             CCCCCCeEEEECCcccHHHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccc--cc------
Q 017476          192 DGLRDGFWVDLGTGSGAIAIGIARVLGS---KGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG--KL------  260 (371)
Q Consensus       192 ~~~~~~~VLDlG~GsG~~al~la~~~~~---~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~--~l------  260 (371)
                      +..++.+|||+|+..|.=++.+.+.+..   .+.|++-|.+..-+......+.+...+ .+.+...|...  ..      
T Consensus       152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~-~~~v~~~~~~~~p~~~~~~~~  230 (375)
T KOG2198|consen  152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSP-NLLVTNHDASLFPNIYLKDGN  230 (375)
T ss_pred             ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCc-ceeeecccceeccccccccCc
Confidence            3446789999999999988888776532   248999999999888887777544332 23333333211  01      


Q ss_pred             ccCCCceeEEEEcCCCCCCCCcccchhhhcccCc-cccccCCCCcHHHHH-HHHHHHhcccccCcEEEEEEC---CcCcH
Q 017476          261 KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEP-RLALDGGVDGLDYLL-HLCNGTASMLKPGGFFAFETN---GEKQC  335 (371)
Q Consensus       261 ~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep-~~aL~gg~dGl~~~~-~il~~a~~~LkpgG~lvle~~---~~~q~  335 (371)
                      ......||-|+++=|+...+.+..-+   .-+.. .....  .-||-.++ .|+..+.+.||+||.++..+-   .....
T Consensus       231 ~~~~~~fDrVLvDVPCS~Dgt~rk~~---~i~~~~w~~~~--~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNE  305 (375)
T KOG2198|consen  231 DKEQLKFDRVLVDVPCSGDGTLRKNP---NIWKEGWKTQR--ALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENE  305 (375)
T ss_pred             hhhhhhcceeEEecccCCCcccccCc---hHhhhhhhhhh--ccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhH
Confidence            01124799999999987543322111   11111 11111  12344443 688999999999999999873   33333


Q ss_pred             HHHHHHHhccccCCceeEEEEecCCCCceE
Q 017476          336 KFLKNYLENDSACSFCNVSIVSDFAGIQRF  365 (371)
Q Consensus       336 ~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~  365 (371)
                      .-|.++++.. .+.|.-+....|+.+..|.
T Consensus       306 aVV~~~L~~~-~~~~~lv~~~~~lp~l~r~  334 (375)
T KOG2198|consen  306 AVVQEALQKV-GGAVELVDVSGDLPGLKRM  334 (375)
T ss_pred             HHHHHHHHHh-cCcccceeeccccccceec
Confidence            4455666654 3556666666777776654

>PRK11524 putative methyltransferase; Provisional

Probab=97.34  E-value=0.00051  Score=66.02  Aligned_cols=84  Identities=19%  Similarity=0.302  Sum_probs=52.5

Q ss_pred             EEEEEcCcccccccC-CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEE
Q 017476          249 IEIRQGSWFGKLKDV-EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF  327 (371)
Q Consensus       249 v~~~~gD~~~~l~~~-~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvl  327 (371)
                      .+++++|..+.+... +++||+|++||||-..........   .+      . ..+-++.+..++..+.++||+||.+++
T Consensus         9 ~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~---~~------~-~~~~~~~l~~~l~~~~rvLK~~G~i~i   78 (284)
T PRK11524          9 KTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIE---AW------K-EDLFIDWLYEWIDECHRVLKKQGTMYI   78 (284)
T ss_pred             CEEEeccHHHHHHhcccCcccEEEECCCcccccccccccc---cc------c-HHHHHHHHHHHHHHHHHHhCCCcEEEE
Confidence            578999988754332 468999999999964211110000   00      0 011134456899999999999999999


Q ss_pred             EECCcCcHHHHHHHHh
Q 017476          328 ETNGEKQCKFLKNYLE  343 (371)
Q Consensus       328 e~~~~~q~~~v~~~l~  343 (371)
                      .+ +......+..++.
T Consensus        79 ~~-~~~~~~~~~~~~~   93 (284)
T PRK11524         79 MN-STENMPFIDLYCR   93 (284)
T ss_pred             Ec-CchhhhHHHHHHh
Confidence            87 4444444444444

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.32  E-value=0.0029  Score=60.20  Aligned_cols=129  Identities=17%  Similarity=0.258  Sum_probs=83.1

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC----------------------------C-
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG----------------------------L-  245 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~g----------------------------l-  245 (371)
                      .+.+||-.|||-|.++..+|..   +..+.|.|.|--|+-...--+....                            + 
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP  132 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP  132 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence            4579999999999999999995   5799999999998644333211100                            0 


Q ss_pred             ----------CCcEEEEEcCcccccccC--CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHH
Q 017476          246 ----------QDIIEIRQGSWFGKLKDV--EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCN  313 (371)
Q Consensus       246 ----------~~~v~~~~gD~~~~l~~~--~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~  313 (371)
                                ..++....||+.+.....  .++||.|++. =||                         |-...+-..++
T Consensus       133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~-FFI-------------------------DTA~Ni~~Yi~  186 (270)
T PF07942_consen  133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTC-FFI-------------------------DTAENIIEYIE  186 (270)
T ss_pred             CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEE-EEe-------------------------echHHHHHHHH
Confidence                      123556667766543332  3678888874 111                         11234556778


Q ss_pred             HHhcccccCcEEEEEECC-----c-----------CcHHHHHHHHhccccCCceeEEEE
Q 017476          314 GTASMLKPGGFFAFETNG-----E-----------KQCKFLKNYLENDSACSFCNVSIV  356 (371)
Q Consensus       314 ~a~~~LkpgG~lvle~~~-----~-----------~q~~~v~~~l~~~~~~gf~~v~~~  356 (371)
                      .+.++|||||.+ +..++     .           -..+++..++++   -||..++..
T Consensus       187 tI~~lLkpgG~W-IN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~---~GF~~~~~~  241 (270)
T PF07942_consen  187 TIEHLLKPGGYW-INFGPLLYHFEPMSIPNEMSVELSLEEIKELIEK---LGFEIEKEE  241 (270)
T ss_pred             HHHHHhccCCEE-EecCCccccCCCCCCCCCcccCCCHHHHHHHHHH---CCCEEEEEE
Confidence            888999999954 33320     1           135778888875   689765443

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PRK13699 putative methylase; Provisional

Probab=97.21  E-value=0.0013  Score=61.10  Aligned_cols=88  Identities=16%  Similarity=0.262  Sum_probs=57.2

Q ss_pred             EEEEEcCcccccccC-CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEE
Q 017476          249 IEIRQGSWFGKLKDV-EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF  327 (371)
Q Consensus       249 v~~~~gD~~~~l~~~-~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvl  327 (371)
                      .+++++|..+.+..+ ++++|+||.+|||.-...         .+.-. . ..+.+..+.+..++.++.++|||||.+++
T Consensus         2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~---------~~~~~-~-~~~~~~~ew~~~~l~E~~RVLKpgg~l~i   70 (227)
T PRK13699          2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFR---------DRQGR-T-IAGDKTDEWLQPACNEMYRVLKKDALMVS   70 (227)
T ss_pred             CeEEechHHHHHHhCCccccceEEeCCCcccccc---------cCCCc-c-cccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence            367889987754433 578999999999953100         00000 0 11223346677899999999999999988


Q ss_pred             EECCcCcHHHHHHHHhccccCCce
Q 017476          328 ETNGEKQCKFLKNYLENDSACSFC  351 (371)
Q Consensus       328 e~~~~~q~~~v~~~l~~~~~~gf~  351 (371)
                      -+ +..+...+...+++   .||.
T Consensus        71 f~-~~~~~~~~~~al~~---~GF~   90 (227)
T PRK13699         71 FY-GWNRVDRFMAAWKN---AGFS   90 (227)
T ss_pred             Ee-ccccHHHHHHHHHH---CCCE
Confidence            76 44555556666664   5675

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=96.99  E-value=0.002  Score=62.82  Aligned_cols=97  Identities=18%  Similarity=0.155  Sum_probs=73.3

Q ss_pred             CeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCC
Q 017476          197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPY  276 (371)
Q Consensus       197 ~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPY  276 (371)
                      ...+|+|.|.|.++-.+...+ |  +|-+++.+...+-.++.+.. .|    |+.+.||++...+    +-|+|+.    
T Consensus       179 ~~avDvGgGiG~v~k~ll~~f-p--~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~~P----~~daI~m----  242 (342)
T KOG3178|consen  179 NVAVDVGGGIGRVLKNLLSKY-P--HIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQDTP----KGDAIWM----  242 (342)
T ss_pred             ceEEEcCCcHhHHHHHHHHhC-C--CCceeecCHHHHHhhhhhhc-CC----cceecccccccCC----CcCeEEE----
Confidence            589999999999999999875 4  48888888887777777664 44    8899999998754    3468876    


Q ss_pred             CCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          277 IPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       277 i~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                                .-+..|          -+-+...+|++++++.|+|||.+++.-
T Consensus       243 ----------kWiLhd----------wtDedcvkiLknC~~sL~~~GkIiv~E  275 (342)
T KOG3178|consen  243 ----------KWILHD----------WTDEDCVKILKNCKKSLPPGGKIIVVE  275 (342)
T ss_pred             ----------Eeeccc----------CChHHHHHHHHHHHHhCCCCCEEEEEe
Confidence                      112121          123556689999999999999988743

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=96.98  E-value=0.011  Score=57.88  Aligned_cols=68  Identities=21%  Similarity=0.165  Sum_probs=52.2

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      .++.++||+||++|.++..+.+.   +.+|+|||..+-+     .++..   .++|..+++|.+...+. .+.+|.+||+
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~l~-----~~L~~---~~~V~h~~~d~fr~~p~-~~~vDwvVcD  277 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGPMA-----QSLMD---TGQVEHLRADGFKFRPP-RKNVDWLVCD  277 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechhcC-----HhhhC---CCCEEEEeccCcccCCC-CCCCCEEEEe
Confidence            46789999999999999999985   5699999966522     11211   34699999998887653 4689999994

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=96.94  E-value=0.0091  Score=56.53  Aligned_cols=123  Identities=19%  Similarity=0.235  Sum_probs=90.2

Q ss_pred             CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc-CCCceeEE
Q 017476          192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VEGKLSGV  270 (371)
Q Consensus       192 ~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~-~~~~fDlI  270 (371)
                      ....++.|+-+| -.-..+++++-. +-..+|..|||++..++...+-++..|+.+ ++.+.-|+.++++. ..++||++
T Consensus       149 GDL~gK~I~vvG-DDDLtsia~aLt-~mpk~iaVvDIDERli~fi~k~aee~g~~~-ie~~~~Dlr~plpe~~~~kFDvf  225 (354)
T COG1568         149 GDLEGKEIFVVG-DDDLTSIALALT-GMPKRIAVVDIDERLIKFIEKVAEELGYNN-IEAFVFDLRNPLPEDLKRKFDVF  225 (354)
T ss_pred             cCcCCCeEEEEc-CchhhHHHHHhc-CCCceEEEEechHHHHHHHHHHHHHhCccc-hhheeehhcccChHHHHhhCCee
Confidence            455678899998 445555555543 234589999999999999999999999865 99999999988864 35799999


Q ss_pred             EEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccC---cEEEEEECC--cCcHHHHHHHHhc
Q 017476          271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPG---GFFAFETNG--EKQCKFLKNYLEN  344 (371)
Q Consensus       271 vsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~Lkpg---G~lvle~~~--~~q~~~v~~~l~~  344 (371)
                      +.+||+-                           ...++.|+......||.-   |++.+..-.  .+.-.++++++.+
T Consensus       226 iTDPpeT---------------------------i~alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~eiQr~lIn  277 (354)
T COG1568         226 ITDPPET---------------------------IKALKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREIQRILIN  277 (354)
T ss_pred             ecCchhh---------------------------HHHHHHHHhccHHHhcCCCccceEeeeeccccHHHHHHHHHHHHH
Confidence            9999984                           345667777777778766   777776532  2333456664443

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.93  E-value=0.024  Score=51.47  Aligned_cols=147  Identities=16%  Similarity=0.175  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcC
Q 017476          176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGS  255 (371)
Q Consensus       176 te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD  255 (371)
                      -..|...++.-+ ......++.+||=||..+|...-.++.-. +.+.++|||.|+....-.-.-++..   +++-.+.+|
T Consensus        58 RSKLaAaIl~Gl-~~~pi~~g~~VLYLGAasGTTvSHVSDIv-~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~D  132 (231)
T COG1889          58 RSKLAAAILKGL-KNFPIKEGSKVLYLGAASGTTVSHVSDIV-GEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILED  132 (231)
T ss_pred             hhHHHHHHHcCc-ccCCcCCCCEEEEeeccCCCcHhHHHhcc-CCCcEEEEEecchhHHHHHHHHHhC---CCceeeecc
Confidence            345555565554 33345568899999999999999999976 5789999999998765443333322   347788888


Q ss_pred             cccccc--cCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC---
Q 017476          256 WFGKLK--DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN---  330 (371)
Q Consensus       256 ~~~~l~--~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~---  330 (371)
                      +..+..  ..-+..|+|+.+        +.         .|           +-.+-+..++...|++||.+++.+-   
T Consensus       133 A~~P~~Y~~~Ve~VDviy~D--------VA---------Qp-----------~Qa~I~~~Na~~FLk~~G~~~i~iKArS  184 (231)
T COG1889         133 ARKPEKYRHLVEKVDVIYQD--------VA---------QP-----------NQAEILADNAEFFLKKGGYVVIAIKARS  184 (231)
T ss_pred             cCCcHHhhhhcccccEEEEe--------cC---------Cc-----------hHHHHHHHHHHHhcccCCeEEEEEEeec
Confidence            866533  224579999873        11         11           1233577888999999997766541   


Q ss_pred             ---CcCcHHHHHHHHhccccCCceeEEE
Q 017476          331 ---GEKQCKFLKNYLENDSACSFCNVSI  355 (371)
Q Consensus       331 ---~~~q~~~v~~~l~~~~~~gf~~v~~  355 (371)
                         ..+..+-+++.+++...++|.-++.
T Consensus       185 IdvT~dp~~vf~~ev~kL~~~~f~i~e~  212 (231)
T COG1889         185 IDVTADPEEVFKDEVEKLEEGGFEILEV  212 (231)
T ss_pred             ccccCCHHHHHHHHHHHHHhcCceeeEE
Confidence               1222222333444443477755444

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=96.92  E-value=0.00017  Score=65.27  Aligned_cols=93  Identities=19%  Similarity=0.297  Sum_probs=61.7

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      .+.++||+|+|.|-++..++..+   .+|+|.|+|..|....++.    +..  | +-.-+|.+.    +-+||+|.|  
T Consensus       112 ~~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~kk----~yn--V-l~~~ew~~t----~~k~dli~c--  175 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKKK----NYN--V-LTEIEWLQT----DVKLDLILC--  175 (288)
T ss_pred             CCeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhhc----CCc--e-eeehhhhhc----CceeehHHH--
Confidence            46799999999999999998876   5799999999987755432    211  1 122233321    247999988  


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhccccc-CcEEEE
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKP-GGFFAF  327 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~Lkp-gG~lvl  327 (371)
                             ++-|   .+.+.|-              .+++.+...|+| +|.+++
T Consensus       176 -------lNlL---DRc~~p~--------------kLL~Di~~vl~psngrviv  205 (288)
T KOG3987|consen  176 -------LNLL---DRCFDPF--------------KLLEDIHLVLAPSNGRVIV  205 (288)
T ss_pred             -------HHHH---HhhcChH--------------HHHHHHHHHhccCCCcEEE
Confidence                   1111   1233332              577777888888 787765

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=96.86  E-value=0.0018  Score=64.37  Aligned_cols=105  Identities=26%  Similarity=0.270  Sum_probs=78.9

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++..++|+|||.|.....++..  ...+++|+|.++.-+..+..-....++.++..++.+|+..... .+..||++-++ 
T Consensus       110 ~~~~~~~~~~g~~~~~~~i~~f--~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~f-edn~fd~v~~l-  185 (364)
T KOG1269|consen  110 PGSKVLDVGTGVGGPSRYIAVF--KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPF-EDNTFDGVRFL-  185 (364)
T ss_pred             ccccccccCcCcCchhHHHHHh--ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCC-CccccCcEEEE-
Confidence            3457999999999999999884  5789999999999888888777777777777777777766432 25789988872 


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE  328 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle  328 (371)
                                   ++..|.|..        .    ..++++.+.++|||.++.+
T Consensus       186 -------------d~~~~~~~~--------~----~~y~Ei~rv~kpGG~~i~~  214 (364)
T KOG1269|consen  186 -------------EVVCHAPDL--------E----KVYAEIYRVLKPGGLFIVK  214 (364)
T ss_pred             -------------eecccCCcH--------H----HHHHHHhcccCCCceEEeH
Confidence                         333444432        2    5566677889999998874

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=96.80  E-value=0.008  Score=57.00  Aligned_cols=123  Identities=16%  Similarity=0.186  Sum_probs=68.7

Q ss_pred             CeEEEECCccc--HHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc-----------cC
Q 017476          197 GFWVDLGTGSG--AIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-----------DV  263 (371)
Q Consensus       197 ~~VLDlG~GsG--~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~-----------~~  263 (371)
                      ..+||||||--  ...-.+|++..|+++|+=||.+|.++..++.-+..+. ..+..++++|+.++-.           ++
T Consensus        70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~-~g~t~~v~aD~r~p~~iL~~p~~~~~lD~  148 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP-RGRTAYVQADLRDPEAILAHPEVRGLLDF  148 (267)
T ss_dssp             -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T-TSEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred             ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC-CccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence            37999999933  3455677777799999999999999999888765443 1348999999987521           11


Q ss_pred             CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcC-c---HHHHH
Q 017476          264 EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEK-Q---CKFLK  339 (371)
Q Consensus       264 ~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~-q---~~~v~  339 (371)
                      ...+-+++.               .+..|-|.         -+....++......|.||.+|++.+...+ .   .+.+.
T Consensus       149 ~rPVavll~---------------~vLh~v~D---------~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~  204 (267)
T PF04672_consen  149 DRPVAVLLV---------------AVLHFVPD---------DDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALE  204 (267)
T ss_dssp             TS--EEEEC---------------T-GGGS-C---------GCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHH
T ss_pred             CCCeeeeee---------------eeeccCCC---------ccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHH
Confidence            222223332               22233221         12245788888899999999999885433 2   23344


Q ss_pred             HHHhc
Q 017476          340 NYLEN  344 (371)
Q Consensus       340 ~~l~~  344 (371)
                      +.+.+
T Consensus       205 ~~~~~  209 (267)
T PF04672_consen  205 AVYAQ  209 (267)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            55543

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=96.78  E-value=0.0014  Score=66.69  Aligned_cols=126  Identities=19%  Similarity=0.293  Sum_probs=69.6

Q ss_pred             CCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEE---eCCHHHHHHHHHHHHHc
Q 017476          167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAV---DLNPLAAAVAAFNAQRY  243 (371)
Q Consensus       167 ~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gv---Dis~~al~~A~~n~~~~  243 (371)
                      .++.+|. ....+++.+.+.+........-..+||+|||+|.++..|..+   +..+..+   |..+..+..|.+    .
T Consensus        90 ggt~F~~-Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r---~V~t~s~a~~d~~~~qvqfale----R  161 (506)
T PF03141_consen   90 GGTMFPH-GADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER---NVTTMSFAPNDEHEAQVQFALE----R  161 (506)
T ss_pred             CCccccC-CHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhC---CceEEEcccccCCchhhhhhhh----c
Confidence            3344444 334556666665521111112347999999999999999874   3333333   333334444432    3


Q ss_pred             CCCCcEEEEEcCcccccccCCCceeEEEEc---CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccc
Q 017476          244 GLQDIIEIRQGSWFGKLKDVEGKLSGVVSN---PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLK  320 (371)
Q Consensus       244 gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN---PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~Lk  320 (371)
                      |++.-+.++ +  ..-++.+.+.||+|-|-   =|++.                       .+|     .++-++-++|+
T Consensus       162 Gvpa~~~~~-~--s~rLPfp~~~fDmvHcsrc~i~W~~-----------------------~~g-----~~l~evdRvLR  210 (506)
T PF03141_consen  162 GVPAMIGVL-G--SQRLPFPSNAFDMVHCSRCLIPWHP-----------------------NDG-----FLLFEVDRVLR  210 (506)
T ss_pred             Ccchhhhhh-c--cccccCCccchhhhhcccccccchh-----------------------ccc-----ceeehhhhhhc
Confidence            544322111 1  13355556899999881   11111                       112     24456679999


Q ss_pred             cCcEEEEEECC
Q 017476          321 PGGFFAFETNG  331 (371)
Q Consensus       321 pgG~lvle~~~  331 (371)
                      |||++++....
T Consensus       211 pGGyfv~S~pp  221 (506)
T PF03141_consen  211 PGGYFVLSGPP  221 (506)
T ss_pred             cCceEEecCCc
Confidence            99999997754

; GO: 0008168 methyltransferase activity

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=96.77  E-value=0.0012  Score=63.90  Aligned_cols=90  Identities=22%  Similarity=0.347  Sum_probs=62.7

Q ss_pred             HHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcc
Q 017476          178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF  257 (371)
Q Consensus       178 ~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~  257 (371)
                      .|++.+++.+    ...+++.++|.--|.|..+.++.+.+ ++++++|+|.+++|++.|++++...  .+++.++++++-
T Consensus         7 Vll~Evl~~L----~~~~~g~~vD~T~G~GGHS~aiL~~~-~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~   79 (310)
T PF01795_consen    7 VLLKEVLEAL----NPKPGGIYVDCTFGGGGHSKAILEKL-PNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFS   79 (310)
T ss_dssp             TTHHHHHHHH----T--TT-EEEETT-TTSHHHHHHHHT--TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GG
T ss_pred             ccHHHHHHhh----CcCCCceEEeecCCcHHHHHHHHHhC-CCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHH
Confidence            4566677766    23456799999999999999999987 5699999999999999999877644  578999999875


Q ss_pred             ccc---cc--CCCceeEEEEcC
Q 017476          258 GKL---KD--VEGKLSGVVSNP  274 (371)
Q Consensus       258 ~~l---~~--~~~~fDlIvsNP  274 (371)
                      +..   ..  ...++|.|+.+.
T Consensus        80 ~l~~~l~~~~~~~~~dgiL~DL  101 (310)
T PF01795_consen   80 NLDEYLKELNGINKVDGILFDL  101 (310)
T ss_dssp             GHHHHHHHTTTTS-EEEEEEE-
T ss_pred             HHHHHHHHccCCCccCEEEEcc
Confidence            421   11  135799998864

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=96.74  E-value=0.012  Score=56.69  Aligned_cols=74  Identities=19%  Similarity=0.229  Sum_probs=53.1

Q ss_pred             eEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc-CCCceeEEEEcCCC
Q 017476          198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VEGKLSGVVSNPPY  276 (371)
Q Consensus       198 ~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~-~~~~fDlIvsNPPY  276 (371)
                      +++||+||.|.+.+.+.+.  .-..+.++|+++.+.+.-+.|..        ....+|..+.... ..+.+|+++.-||+
T Consensus         2 ~~~dlFsG~Gg~~~g~~~a--g~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~~~D~l~ggpPC   71 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQA--GFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPKDVDLLIGGPPC   71 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHT--TEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHHT-SEEEEE---
T ss_pred             cEEEEccCccHHHHHHHhc--CcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccccceEEEeccCC
Confidence            6999999999999999885  23478999999999999999863        6778887653221 11159999999998


Q ss_pred             CCCCC
Q 017476          277 IPSDD  281 (371)
Q Consensus       277 i~~~~  281 (371)
                      -+-+.
T Consensus        72 Q~fS~   76 (335)
T PF00145_consen   72 QGFSI   76 (335)
T ss_dssp             TTTST
T ss_pred             ceEec
Confidence            76544

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.70  E-value=0.0045  Score=53.39  Aligned_cols=80  Identities=33%  Similarity=0.467  Sum_probs=64.4

Q ss_pred             chHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 017476          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ  253 (371)
Q Consensus       174 p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~  253 (371)
                      |.|-.-++.++..+ .   ..+.++.+|+|+|.|.+-++.++.  .--..+|+|+++-.+.+++-.+-+.|+..+..|..
T Consensus        55 pAtteQv~nVLSll-~---~n~~GklvDlGSGDGRiVlaaar~--g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~R  128 (199)
T KOG4058|consen   55 PATTEQVENVLSLL-R---GNPKGKLVDLGSGDGRIVLAAARC--GLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRR  128 (199)
T ss_pred             CccHHHHHHHHHHc-c---CCCCCcEEeccCCCceeehhhhhh--CCCcCCceeccHHHHHHHHHHHHHHhcccchhhhh
Confidence            34444556666666 2   224568999999999999999986  23578999999999999999999999988899999


Q ss_pred             cCcccc
Q 017476          254 GSWFGK  259 (371)
Q Consensus       254 gD~~~~  259 (371)
                      -|.++.
T Consensus       129 kdlwK~  134 (199)
T KOG4058|consen  129 KDLWKV  134 (199)
T ss_pred             hhhhhc
Confidence            998864

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=96.65  E-value=0.0057  Score=55.54  Aligned_cols=59  Identities=14%  Similarity=0.198  Sum_probs=43.4

Q ss_pred             ccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476          172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       172 Prp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~  238 (371)
                      |.+-...|++.++... .    .++..|||..||||..++++.+.   +-+.+|+|++++.+++|++
T Consensus       173 ~~~kP~~l~~~lI~~~-t----~~gdiVlDpF~GSGTT~~aa~~l---~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  173 PTQKPVELIERLIKAS-T----NPGDIVLDPFAGSGTTAVAAEEL---GRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             TT-S-HHHHHHHHHHH-S-----TT-EEEETT-TTTHHHHHHHHT---T-EEEEEESSHHHHHHHHH
T ss_pred             eecCCHHHHHHHHHhh-h----ccceeeehhhhccChHHHHHHHc---CCeEEEEeCCHHHHHHhcC
Confidence            5555567777777665 2    24679999999999999988773   5789999999999999875

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PRK11524 putative methyltransferase; Provisional

Probab=96.61  E-value=0.0072  Score=58.05  Aligned_cols=62  Identities=11%  Similarity=0.050  Sum_probs=49.4

Q ss_pred             ccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 017476          172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (371)
Q Consensus       172 Prp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~  241 (371)
                      |.+--+.|++.++...     ..++..|||..+|||..++++.+.   +-+.+|+|++++.+++|++.+.
T Consensus       190 Pt~kP~~L~erlI~~~-----S~~GD~VLDPF~GSGTT~~AA~~l---gR~~IG~Ei~~~Y~~~a~~Rl~  251 (284)
T PRK11524        190 PTQKPEALLKRIILAS-----SNPGDIVLDPFAGSFTTGAVAKAS---GRKFIGIEINSEYIKMGLRRLD  251 (284)
T ss_pred             cccChHHHHHHHHHHh-----CCCCCEEEECCCCCcHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHH
Confidence            3344466777777655     235779999999999999988774   5789999999999999999875

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=96.60  E-value=0.0091  Score=55.64  Aligned_cols=79  Identities=18%  Similarity=0.188  Sum_probs=49.6

Q ss_pred             CeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH---HcCC-----CCcEEEEEcCcccccccCCCcee
Q 017476          197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ---RYGL-----QDIIEIRQGSWFGKLKDVEGKLS  268 (371)
Q Consensus       197 ~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~---~~gl-----~~~v~~~~gD~~~~l~~~~~~fD  268 (371)
                      .+|||.-+|-|.-++.+|. +  +.+|+++|-|+-...+.+.-++   ...-     ..+++++++|..+.+......||
T Consensus        77 ~~VLDaTaGLG~Da~vlA~-~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~D  153 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLAS-L--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFD  153 (234)
T ss_dssp             --EEETT-TTSHHHHHHHH-H--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--S
T ss_pred             CEEEECCCcchHHHHHHHc-c--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCC
Confidence            3899999999999999986 4  5789999999977666554333   2211     14799999999888774467999


Q ss_pred             EEEEcCCCCC
Q 017476          269 GVVSNPPYIP  278 (371)
Q Consensus       269 lIvsNPPYi~  278 (371)
                      +|..+|-|-.
T Consensus       154 VVY~DPMFp~  163 (234)
T PF04445_consen  154 VVYFDPMFPE  163 (234)
T ss_dssp             EEEE--S---
T ss_pred             EEEECCCCCC
Confidence            9999999864

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.50  E-value=0.0022  Score=64.94  Aligned_cols=105  Identities=17%  Similarity=0.203  Sum_probs=85.1

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc---ccCCCceeEEE
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL---KDVEGKLSGVV  271 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l---~~~~~~fDlIv  271 (371)
                      ++.+|||--++||.-++..|+++..-.+|++-|.++.+++..++|++.++.++.++..++|+....   ......||+|=
T Consensus       109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID  188 (525)
T KOG1253|consen  109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID  188 (525)
T ss_pred             CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe
Confidence            356899999999999999999985555899999999999999999999999988999999874321   11236899998


Q ss_pred             EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      .+ ||...                             ..|++.|.+.++.||.|++..
T Consensus       189 LD-PyGs~-----------------------------s~FLDsAvqav~~gGLL~vT~  216 (525)
T KOG1253|consen  189 LD-PYGSP-----------------------------SPFLDSAVQAVRDGGLLCVTC  216 (525)
T ss_pred             cC-CCCCc-----------------------------cHHHHHHHHHhhcCCEEEEEe
Confidence            76 34321                             157888889999999999965

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=96.48  E-value=0.067  Score=47.35  Aligned_cols=138  Identities=14%  Similarity=0.177  Sum_probs=79.5

Q ss_pred             ECCcccHHHHHHHHHhCCCcEEEEEeCCHH--HHHH---HHHHHHHcCCCCcEEEE-EcCccccccc---CCCceeEEEE
Q 017476          202 LGTGSGAIAIGIARVLGSKGSIIAVDLNPL--AAAV---AAFNAQRYGLQDIIEIR-QGSWFGKLKD---VEGKLSGVVS  272 (371)
Q Consensus       202 lG~GsG~~al~la~~~~~~~~V~gvDis~~--al~~---A~~n~~~~gl~~~v~~~-~gD~~~~l~~---~~~~fDlIvs  272 (371)
                      +|=|.=.++++|++.++...+++|.-.+.+  ..+.   +..|++...-.+ +.++ ..|+.+....   ..++||.||-
T Consensus         3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g-~~V~~~VDat~l~~~~~~~~~~FDrIiF   81 (166)
T PF10354_consen    3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELG-VTVLHGVDATKLHKHFRLKNQRFDRIIF   81 (166)
T ss_pred             eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcC-CccccCCCCCcccccccccCCcCCEEEE
Confidence            455555788888888744667777655443  3322   346666553222 3333 3355432221   1468999999


Q ss_pred             cCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcC--cHHHHHHHHhccccCCc
Q 017476          273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEK--QCKFLKNYLENDSACSF  350 (371)
Q Consensus       273 NPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~--q~~~v~~~l~~~~~~gf  350 (371)
                      |-|...... ..-...+..+            -..+..+++.|.++|+++|.+.+.+....  ..-.+.++-+.   .||
T Consensus        82 NFPH~G~~~-~~~~~~i~~n------------r~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~---~gl  145 (166)
T PF10354_consen   82 NFPHVGGGS-EDGKRNIRLN------------RELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAE---AGL  145 (166)
T ss_pred             eCCCCCCCc-cchhHHHHHH------------HHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHh---cCC
Confidence            999875111 1111112111            35677999999999999999999884221  12244444443   778


Q ss_pred             eeEEEE
Q 017476          351 CNVSIV  356 (371)
Q Consensus       351 ~~v~~~  356 (371)
                      .-++..
T Consensus       146 ~l~~~~  151 (166)
T PF10354_consen  146 VLVRKV  151 (166)
T ss_pred             EEEEEe
Confidence            665543

>PRK13699 putative methylase; Provisional

Probab=96.44  E-value=0.01  Score=55.23  Aligned_cols=65  Identities=11%  Similarity=0.107  Sum_probs=49.9

Q ss_pred             ccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC
Q 017476          172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG  244 (371)
Q Consensus       172 Prp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~g  244 (371)
                      |.+--..|++.++... .    .++..|||..||||..+++..+.   +.+.+|+|++++..+.|.+.++...
T Consensus       145 p~~kP~~l~~~~i~~~-s----~~g~~vlDpf~Gsgtt~~aa~~~---~r~~~g~e~~~~y~~~~~~r~~~~~  209 (227)
T PRK13699        145 PTEKPVTSLQPLIESF-T----HPNAIVLDPFAGSGSTCVAALQS---GRRYIGIELLEQYHRAGQQRLAAVQ  209 (227)
T ss_pred             CCCCcHHHHHHHHHHh-C----CCCCEEEeCCCCCCHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHHH
Confidence            4444456666666554 1    24679999999999999988773   5689999999999999999887643

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.36  E-value=0.023  Score=52.80  Aligned_cols=98  Identities=17%  Similarity=0.195  Sum_probs=65.9

Q ss_pred             CCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc--cCCCceeEE
Q 017476          193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK--DVEGKLSGV  270 (371)
Q Consensus       193 ~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~--~~~~~fDlI  270 (371)
                      ..++..+||+|+-||.++..+.++  ...+|+|+|.....+.+--+|      ..|+..++.--...+.  ...+..|++
T Consensus        77 ~~k~kv~LDiGsSTGGFTd~lLq~--gAk~VyavDVG~~Ql~~kLR~------d~rV~~~E~tN~r~l~~~~~~~~~d~~  148 (245)
T COG1189          77 DVKGKVVLDIGSSTGGFTDVLLQR--GAKHVYAVDVGYGQLHWKLRN------DPRVIVLERTNVRYLTPEDFTEKPDLI  148 (245)
T ss_pred             CCCCCEEEEecCCCccHHHHHHHc--CCcEEEEEEccCCccCHhHhc------CCcEEEEecCChhhCCHHHcccCCCeE
Confidence            346789999999999999999985  567999999998777653332      3456555542222222  123578999


Q ss_pred             EEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEE
Q 017476          271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF  327 (371)
Q Consensus       271 vsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvl  327 (371)
                      +++--||+                             +..++..+...++++|.++.
T Consensus       149 v~DvSFIS-----------------------------L~~iLp~l~~l~~~~~~~v~  176 (245)
T COG1189         149 VIDVSFIS-----------------------------LKLILPALLLLLKDGGDLVL  176 (245)
T ss_pred             EEEeehhh-----------------------------HHHHHHHHHHhcCCCceEEE
Confidence            99655553                             22456666677777776665

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=96.31  E-value=0.01  Score=60.69  Aligned_cols=75  Identities=19%  Similarity=0.097  Sum_probs=56.5

Q ss_pred             CCeEEEECCcccHHHHHH---HHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEE
Q 017476          196 DGFWVDLGTGSGAIAIGI---ARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS  272 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~l---a~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvs  272 (371)
                      ..+|+-+|.|-|-+.-..   |+......++++||.+|.|+-..+. .......++|+++.+|+.+.-+. .++.|++||
T Consensus       368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap-~eq~DI~VS  445 (649)
T KOG0822|consen  368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAP-REQADIIVS  445 (649)
T ss_pred             eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCc-hhhccchHH
Confidence            457899999999765444   3333356789999999999865544 55556778999999999775432 478999997

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=96.29  E-value=0.0066  Score=60.73  Aligned_cols=58  Identities=22%  Similarity=0.335  Sum_probs=51.2

Q ss_pred             CeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCc
Q 017476          197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSW  256 (371)
Q Consensus       197 ~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~  256 (371)
                      ..|||+|+|||.++..++++  ..-.|+|+|.-..|.+.|++-..++|..++|+++.-.-
T Consensus        68 v~vLdigtGTGLLSmMAvra--gaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrS  125 (636)
T KOG1501|consen   68 VFVLDIGTGTGLLSMMAVRA--GADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRS  125 (636)
T ss_pred             EEEEEccCCccHHHHHHHHh--cCCeEEeehhhchHHHHHHHHHhcCCCccceeeecccc
Confidence            36999999999999999987  34579999999999999999999999999998886543

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=96.27  E-value=0.033  Score=59.73  Aligned_cols=141  Identities=19%  Similarity=0.284  Sum_probs=87.1

Q ss_pred             CCeEEEECCcccHHHHHHHHHh------CC-----CcEEEEEeCCH---HHHHHHH-----------HHHHH-----cCC
Q 017476          196 DGFWVDLGTGSGAIAIGIARVL------GS-----KGSIIAVDLNP---LAAAVAA-----------FNAQR-----YGL  245 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~------~~-----~~~V~gvDis~---~al~~A~-----------~n~~~-----~gl  245 (371)
                      .-+|+|+|-|+|...+...+.+      .+     ..+++++|..|   +.+..+.           +-...     .|+
T Consensus        58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~  137 (662)
T PRK01747         58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC  137 (662)
T ss_pred             cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence            3589999999999777776554      12     34899999755   3332222           11111     122


Q ss_pred             ------CC--cEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhc
Q 017476          246 ------QD--IIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTAS  317 (371)
Q Consensus       246 ------~~--~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~  317 (371)
                            .+  +++++.||+.+.++.+..++|+|+.++ |.|...     ++.  |               -..++....+
T Consensus       138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~-FsP~~n-----p~~--W---------------~~~~~~~l~~  194 (662)
T PRK01747        138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDG-FAPAKN-----PDM--W---------------SPNLFNALAR  194 (662)
T ss_pred             eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCC-CCCccC-----hhh--c---------------cHHHHHHHHH
Confidence                  11  356788998877766556799999873 332221     222  1               1267788889


Q ss_pred             ccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEecCCCCce-EEEE
Q 017476          318 MLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQR-FVTG  368 (371)
Q Consensus       318 ~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R-~~~a  368 (371)
                      ++++||.++=-+    .+..|++-|.+   .|| .|+..+-+ |.+| .+.|
T Consensus       195 ~~~~~~~~~t~t----~a~~vr~~l~~---~GF-~v~~~~~~-g~kr~~~~~  237 (662)
T PRK01747        195 LARPGATLATFT----SAGFVRRGLQE---AGF-TVRKVKGF-GRKREMLVG  237 (662)
T ss_pred             HhCCCCEEEEee----hHHHHHHHHHH---cCC-eeeecCCC-chhhhhhhe
Confidence            999999988444    56778888886   789 44444433 3444 4433

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=96.22  E-value=0.065  Score=48.45  Aligned_cols=114  Identities=19%  Similarity=0.143  Sum_probs=67.1

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHH----HHHHHHHHHH--cCCCCcEEEEEcCcccccccCCCcee
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLA----AAVAAFNAQR--YGLQDIIEIRQGSWFGKLKDVEGKLS  268 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~a----l~~A~~n~~~--~gl~~~v~~~~gD~~~~l~~~~~~fD  268 (371)
                      ++.+|+|+--|.|.++..++...++.+.|+++=-.+..    ....+.|...  .... +++.+-.+.....  ..+..|
T Consensus        48 pg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~a-N~e~~~~~~~A~~--~pq~~d  124 (238)
T COG4798          48 PGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYA-NVEVIGKPLVALG--APQKLD  124 (238)
T ss_pred             CCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhh-hhhhhCCcccccC--CCCccc
Confidence            46799999999999999999988888899887544431    1112222211  1112 2444444433322  135677


Q ss_pred             EEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC
Q 017476          269 GVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN  330 (371)
Q Consensus       269 lIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~  330 (371)
                      ++..|-=|+...               .....+    .....+...+.+.|||||.+++|-+
T Consensus       125 ~~~~~~~yhdmh---------------~k~i~~----~~A~~vna~vf~~LKPGGv~~V~dH  167 (238)
T COG4798         125 LVPTAQNYHDMH---------------NKNIHP----ATAAKVNAAVFKALKPGGVYLVEDH  167 (238)
T ss_pred             ccccchhhhhhh---------------ccccCc----chHHHHHHHHHHhcCCCcEEEEEec
Confidence            777655454321               111111    1122555667789999999999764

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.10  E-value=0.015  Score=53.73  Aligned_cols=124  Identities=28%  Similarity=0.356  Sum_probs=78.1

Q ss_pred             CeEEEECCcccHHHHHHHHHhCC----C----cEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc------cc
Q 017476          197 GFWVDLGTGSGAIAIGIARVLGS----K----GSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL------KD  262 (371)
Q Consensus       197 ~~VLDlG~GsG~~al~la~~~~~----~----~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l------~~  262 (371)
                      .+++|||+..|.++..+++++..    .    ..|++||+.+-+           -++. |.-+++|+...-      ..
T Consensus        43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~G-V~qlq~DIT~~stae~Ii~h  110 (294)
T KOG1099|consen   43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIEG-VIQLQGDITSASTAEAIIEH  110 (294)
T ss_pred             hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccCc-eEEeecccCCHhHHHHHHHH
Confidence            48999999999999999987632    1    139999998733           2343 888899986542      22


Q ss_pred             C-CCceeEEEEc-CCCCCCCCcccchhhhcccCccccccCCCCcHH------HHHHHHHHHhcccccCcEEEEEECCcCc
Q 017476          263 V-EGKLSGVVSN-PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLD------YLLHLCNGTASMLKPGGFFAFETNGEKQ  334 (371)
Q Consensus       263 ~-~~~fDlIvsN-PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~------~~~~il~~a~~~LkpgG~lvle~~~~~q  334 (371)
                      + .++.|+|||+ -|=+                      .|-+-++      .+...+..+...|+|||.++--+--.+.
T Consensus       111 fggekAdlVvcDGAPDv----------------------TGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~  168 (294)
T KOG1099|consen  111 FGGEKADLVVCDGAPDV----------------------TGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRD  168 (294)
T ss_pred             hCCCCccEEEeCCCCCc----------------------cccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCc
Confidence            2 3589999995 1211                      1111122      3345667778899999999987733333


Q ss_pred             HHHHHHHHhccccCCceeEEEEec
Q 017476          335 CKFLKNYLENDSACSFCNVSIVSD  358 (371)
Q Consensus       335 ~~~v~~~l~~~~~~gf~~v~~~~D  358 (371)
                      ...+..-|+.    -|..|...+.
T Consensus       169 tslLysql~~----ff~kv~~~KP  188 (294)
T KOG1099|consen  169 TSLLYSQLRK----FFKKVTCAKP  188 (294)
T ss_pred             hHHHHHHHHH----HhhceeeecC
Confidence            3333333432    2455555443

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=96.08  E-value=0.02  Score=53.70  Aligned_cols=73  Identities=12%  Similarity=0.106  Sum_probs=54.6

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEE
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS  272 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvs  272 (371)
                      .+.+|+|+|||-==+++..... .++..++|.||+..+++....-+...+.+  .++...|.....+  ....|+.+.
T Consensus       105 ~p~sVlDigCGlNPlalp~~~~-~~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~~--~~~~DlaLl  177 (251)
T PF07091_consen  105 PPDSVLDIGCGLNPLALPWMPE-APGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDPP--KEPADLALL  177 (251)
T ss_dssp             --SEEEEET-TTCHHHHHTTTS-STT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSHT--TSEESEEEE
T ss_pred             CCchhhhhhccCCceehhhccc-CCCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccCC--CCCcchhhH
Confidence            3679999999999998877764 46789999999999999999998888876  5666678766533  357888776

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.99  E-value=0.026  Score=55.22  Aligned_cols=130  Identities=13%  Similarity=0.120  Sum_probs=70.8

Q ss_pred             CCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccC--CCcee
Q 017476          191 NDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV--EGKLS  268 (371)
Q Consensus       191 ~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~--~~~fD  268 (371)
                      .....+++|||+|.|.|.-+.++-..++.-..++-++.|+..-++... +..+-...+.....+|+......+  ...|+
T Consensus       109 ~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~t-l~~nv~t~~td~r~s~vt~dRl~lp~ad~yt  187 (484)
T COG5459         109 VPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDT-LAENVSTEKTDWRASDVTEDRLSLPAADLYT  187 (484)
T ss_pred             CCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHH-HHhhcccccCCCCCCccchhccCCCccceee
Confidence            355678899999999999988888776333367788888854444333 333322222333334433221111  23566


Q ss_pred             EEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcC----cHHHHHHHHhc
Q 017476          269 GVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEK----QCKFLKNYLEN  344 (371)
Q Consensus       269 lIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~----q~~~v~~~l~~  344 (371)
                      +++.      .   ..|-+           ++.+.   -+...++.....+.|||.+++.-.|..    .-...+.++-+
T Consensus       188 l~i~------~---~eLl~-----------d~~ek---~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~~I~rAR~~ll~  244 (484)
T COG5459         188 LAIV------L---DELLP-----------DGNEK---PIQVNIERLWNLLAPGGHLVIVERGTPAGFERILRARQILLA  244 (484)
T ss_pred             hhhh------h---hhhcc-----------ccCcc---hHHHHHHHHHHhccCCCeEEEEeCCCchhHHHHHHHHHHHhc
Confidence            6554      0   11100           11111   122367777889999999988664432    23344555544

>PHA01634 hypothetical protein

Probab=95.98  E-value=0.034  Score=46.86  Aligned_cols=72  Identities=11%  Similarity=0.090  Sum_probs=56.0

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEE
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS  272 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvs  272 (371)
                      ..+++|+|+|.+.|.-++.++.+  ....|+++|.++...+..++|++.+.+-++. ...++|-.    .-+.||+.+.
T Consensus        27 vk~KtV~dIGA~iGdSaiYF~l~--GAK~Vva~E~~~kl~k~~een~k~nnI~DK~-v~~~eW~~----~Y~~~Di~~i   98 (156)
T PHA01634         27 VYQRTIQIVGADCGSSALYFLLR--GASFVVQYEKEEKLRKKWEEVCAYFNICDKA-VMKGEWNG----EYEDVDIFVM   98 (156)
T ss_pred             ecCCEEEEecCCccchhhHHhhc--CccEEEEeccCHHHHHHHHHHhhhheeeece-eecccccc----cCCCcceEEE
Confidence            35779999999999999999885  5678999999999999999999888664432 33345532    2367888776

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=95.92  E-value=0.017  Score=58.92  Aligned_cols=135  Identities=14%  Similarity=0.174  Sum_probs=84.6

Q ss_pred             CeEEEECCcccHHHHHHHHHhCCCc--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          197 GFWVDLGTGSGAIAIGIARVLGSKG--SIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       197 ~~VLDlG~GsG~~al~la~~~~~~~--~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      .+|+|..+|.|.++.+|...  +-+  +|+-+ ..+..+.+..    ..|+    -=+..||.+.+.....+||+|-+|-
T Consensus       367 RNVMDMnAg~GGFAAAL~~~--~VWVMNVVP~-~~~ntL~vIy----dRGL----IG~yhDWCE~fsTYPRTYDLlHA~~  435 (506)
T PF03141_consen  367 RNVMDMNAGYGGFAAALIDD--PVWVMNVVPV-SGPNTLPVIY----DRGL----IGVYHDWCEAFSTYPRTYDLLHADG  435 (506)
T ss_pred             eeeeeecccccHHHHHhccC--CceEEEeccc-CCCCcchhhh----hccc----chhccchhhccCCCCcchhheehhh
Confidence            47999999999999999763  321  22222 2222333221    2233    2244589888877678999999853


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEE
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVS  354 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~  354 (371)
                      =|....             .+          -.+..++-+.-+.|+|||++++-. ..+-...++.+++.   -.| +++
T Consensus       436 lfs~~~-------------~r----------C~~~~illEmDRILRP~G~~iiRD-~~~vl~~v~~i~~~---lrW-~~~  487 (506)
T PF03141_consen  436 LFSLYK-------------DR----------CEMEDILLEMDRILRPGGWVIIRD-TVDVLEKVKKIAKS---LRW-EVR  487 (506)
T ss_pred             hhhhhc-------------cc----------ccHHHHHHHhHhhcCCCceEEEec-cHHHHHHHHHHHHh---Ccc-eEE
Confidence            221100             00          113467778889999999999977 45667788888875   335 444


Q ss_pred             EEecC---CCCceEEEEEe
Q 017476          355 IVSDF---AGIQRFVTGFR  370 (371)
Q Consensus       355 ~~~Dl---~g~~R~~~a~~  370 (371)
                      ++..-   .+.+++++++|
T Consensus       488 ~~d~e~g~~~~EkiL~~~K  506 (506)
T PF03141_consen  488 IHDTEDGPDGPEKILICQK  506 (506)
T ss_pred             EEecCCCCCCCceEEEEEC
Confidence            44333   34789998875

; GO: 0008168 methyltransferase activity

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=95.83  E-value=0.042  Score=53.92  Aligned_cols=77  Identities=18%  Similarity=0.191  Sum_probs=57.2

Q ss_pred             CeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccC-CC-ceeEEEEcC
Q 017476          197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV-EG-KLSGVVSNP  274 (371)
Q Consensus       197 ~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~-~~-~fDlIvsNP  274 (371)
                      .+++||+||.|.+.+.+...  .---+.++|+++.+++.-+.|...      ..++..|..+..... .+ .+|+|+.-|
T Consensus         4 ~~~idLFsG~GG~~lGf~~a--gf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGp   75 (328)
T COG0270           4 MKVIDLFAGIGGLSLGFEEA--GFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGP   75 (328)
T ss_pred             ceEEeeccCCchHHHHHHhc--CCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCC
Confidence            48999999999999888775  234688999999999988888532      456666765433221 12 799999999


Q ss_pred             CCCCCCC
Q 017476          275 PYIPSDD  281 (371)
Q Consensus       275 PYi~~~~  281 (371)
                      |+-+-+.
T Consensus        76 PCQ~FS~   82 (328)
T COG0270          76 PCQDFSI   82 (328)
T ss_pred             CCcchhh
Confidence            9865433

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=95.53  E-value=0.34  Score=45.55  Aligned_cols=138  Identities=12%  Similarity=0.132  Sum_probs=85.6

Q ss_pred             CCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHHHc
Q 017476          167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS---KGSIIAVDLNPLAAAVAAFNAQRY  243 (371)
Q Consensus       167 ~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~---~~~V~gvDis~~al~~A~~n~~~~  243 (371)
                      |..+--|.+++.+...+.+.. .   ...+...+|+|+|+..-+..+...+.+   -.+.+.+|+|...+.-..+.+...
T Consensus        54 PEYYpTRtEaaIl~~~a~Eia-~---~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~  129 (321)
T COG4301          54 PEYYPTRTEAAILQARAAEIA-S---ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILRE  129 (321)
T ss_pred             ccccCchhHHHHHHHHHHHHH-H---hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHh
Confidence            334444677777776666554 1   223568999999999877777665522   358999999998887655544433


Q ss_pred             CCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCc
Q 017476          244 GLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGG  323 (371)
Q Consensus       244 gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG  323 (371)
                      -..-.+.-+.+|+...+..+.+.---+++   | ..+.+..+++                  +....|+.+....|+||-
T Consensus       130 y~~l~v~~l~~~~~~~La~~~~~~~Rl~~---f-lGStlGN~tp------------------~e~~~Fl~~l~~a~~pGd  187 (321)
T COG4301         130 YPGLEVNALCGDYELALAELPRGGRRLFV---F-LGSTLGNLTP------------------GECAVFLTQLRGALRPGD  187 (321)
T ss_pred             CCCCeEeehhhhHHHHHhcccCCCeEEEE---E-ecccccCCCh------------------HHHHHHHHHHHhcCCCcc
Confidence            22223777888887666544322222222   1 1122222222                  223468888999999999


Q ss_pred             EEEEEEC
Q 017476          324 FFAFETN  330 (371)
Q Consensus       324 ~lvle~~  330 (371)
                      .+++-+.
T Consensus       188 ~~LlGvD  194 (321)
T COG4301         188 YFLLGVD  194 (321)
T ss_pred             eEEEecc
Confidence            9998764

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=95.53  E-value=0.041  Score=46.34  Aligned_cols=93  Identities=17%  Similarity=0.304  Sum_probs=60.2

Q ss_pred             cEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEE
Q 017476          248 IIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF  327 (371)
Q Consensus       248 ~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvl  327 (371)
                      .+++..||+.+.++.....||+|+-++ |.|...     ++.  |.               ..+++.+.+++++||.+.-
T Consensus        32 ~L~L~~gDa~~~l~~l~~~~Da~ylDg-FsP~~n-----Pel--Ws---------------~e~~~~l~~~~~~~~~l~T   88 (124)
T PF05430_consen   32 TLTLWFGDAREMLPQLDARFDAWYLDG-FSPAKN-----PEL--WS---------------EELFKKLARLSKPGGTLAT   88 (124)
T ss_dssp             EEEEEES-HHHHHHHB-T-EEEEEE-S-S-TTTS-----GGG--SS---------------HHHHHHHHHHEEEEEEEEE
T ss_pred             EEEEEEcHHHHHHHhCcccCCEEEecC-CCCcCC-----ccc--CC---------------HHHHHHHHHHhCCCcEEEE
Confidence            367888998777776668999999974 554433     221  11               1577888899999998776


Q ss_pred             EECCcCcHHHHHHHHhccccCCceeEEEEecCCCCceEEEEEeC
Q 017476          328 ETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFRQ  371 (371)
Q Consensus       328 e~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~~~  371 (371)
                      -.    ....|++-|.+   .|| .|+..+-+.|+.=.+.|.++
T Consensus        89 ys----~a~~Vr~~L~~---aGF-~v~~~~g~g~Kr~~~~a~~~  124 (124)
T PF05430_consen   89 YS----SAGAVRRALQQ---AGF-EVEKVPGFGRKREMLRAVKP  124 (124)
T ss_dssp             S------BHHHHHHHHH---CTE-EEEEEE-STTSSEEEEEEC-
T ss_pred             ee----chHHHHHHHHH---cCC-EEEEcCCCCCcchheEEEcC
Confidence            55    34568888886   789 57777777666668888763

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=95.52  E-value=0.32  Score=42.90  Aligned_cols=121  Identities=22%  Similarity=0.266  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcC
Q 017476          176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGS  255 (371)
Q Consensus       176 te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD  255 (371)
                      .+.+++.+.+..      ....+|+=+||=|-...+.-  ...++.+++..|++..--.        .+  +. +|+.=|
T Consensus        12 ~~~l~~~l~~~~------~~~~~iaclstPsl~~~l~~--~~~~~~~~~Lle~D~RF~~--------~~--~~-~F~fyD   72 (162)
T PF10237_consen   12 AEFLARELLDGA------LDDTRIACLSTPSLYEALKK--ESKPRIQSFLLEYDRRFEQ--------FG--GD-EFVFYD   72 (162)
T ss_pred             HHHHHHHHHHhc------CCCCEEEEEeCcHHHHHHHh--hcCCCccEEEEeecchHHh--------cC--Cc-ceEECC
Confidence            355566555433      13468999998887766654  1236778999999985522        22  22 455555


Q ss_pred             cccccc---cCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCc
Q 017476          256 WFGKLK---DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGE  332 (371)
Q Consensus       256 ~~~~l~---~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~  332 (371)
                      ..++..   ...++||+||.+|||..        .                  +......+.+..++++++.+++.+ |.
T Consensus        73 ~~~p~~~~~~l~~~~d~vv~DPPFl~--------~------------------ec~~k~a~ti~~L~k~~~kii~~T-g~  125 (162)
T PF10237_consen   73 YNEPEELPEELKGKFDVVVIDPPFLS--------E------------------ECLTKTAETIRLLLKPGGKIILCT-GE  125 (162)
T ss_pred             CCChhhhhhhcCCCceEEEECCCCCC--------H------------------HHHHHHHHHHHHHhCccceEEEec-HH
Confidence            544432   22579999999999953        1                  223345555556668889999988 56


Q ss_pred             CcHHHHHHHH
Q 017476          333 KQCKFLKNYL  342 (371)
Q Consensus       333 ~q~~~v~~~l  342 (371)
                      ...+.+.+++
T Consensus       126 ~~~~~~~~ll  135 (162)
T PF10237_consen  126 EMEELIKKLL  135 (162)
T ss_pred             HHHHHHHHHh
Confidence            6666666666

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=95.40  E-value=0.48  Score=44.66  Aligned_cols=120  Identities=16%  Similarity=0.113  Sum_probs=70.9

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH-----HcCCCCcEEEEEcCccccccc--CCCc-e
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ-----RYGLQDIIEIRQGSWFGKLKD--VEGK-L  267 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~-----~~gl~~~v~~~~gD~~~~l~~--~~~~-f  267 (371)
                      ..+||++|+|+|..++.+|..  ..++|+-.|+... +...+.|..     .+++...+.+..-+|.+++..  .... |
T Consensus        87 ~~~vlELGsGtglvG~~aa~~--~~~~v~ltD~~~~-~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~  163 (248)
T KOG2793|consen   87 YINVLELGSGTGLVGILAALL--LGAEVVLTDLPKV-VENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPF  163 (248)
T ss_pred             ceeEEEecCCccHHHHHHHHH--hcceeccCCchhh-HHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcc
Confidence            457999999999888888886  4678999898653 333333332     233333577777777665432  1233 8


Q ss_pred             eEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcC-cHHHHHHHHhc
Q 017476          268 SGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEK-QCKFLKNYLEN  344 (371)
Q Consensus       268 DlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~-q~~~v~~~l~~  344 (371)
                      |+|++--+               -|+|+.           +..++......|..+|.++++..-.+ +......++.+
T Consensus       164 DlilasDv---------------vy~~~~-----------~e~Lv~tla~ll~~~~~i~l~~~lr~~~~~~~~~~~~~  215 (248)
T KOG2793|consen  164 DLILASDV---------------VYEEES-----------FEGLVKTLAFLLAKDGTIFLAYPLRRDAAWEIEVLLFK  215 (248)
T ss_pred             cEEEEeee---------------eecCCc-----------chhHHHHHHHHHhcCCeEEEEEecccchHHHHHHHHhh
Confidence            99887211               222221           22455555667788887777763222 23344444443

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=95.27  E-value=0.14  Score=49.48  Aligned_cols=38  Identities=13%  Similarity=0.030  Sum_probs=29.1

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHH
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAA  234 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~  234 (371)
                      ....+||-.|||.|.++..+|..   +-++-|-|.|--|+-
T Consensus       149 r~ki~iLvPGaGlGRLa~dla~~---G~~~qGNEfSy~Mli  186 (369)
T KOG2798|consen  149 RTKIRILVPGAGLGRLAYDLACL---GFKCQGNEFSYFMLI  186 (369)
T ss_pred             ccCceEEecCCCchhHHHHHHHh---cccccccHHHHHHHH
Confidence            34568999999999999999986   234556577776653

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=95.25  E-value=0.28  Score=47.84  Aligned_cols=73  Identities=16%  Similarity=0.220  Sum_probs=52.7

Q ss_pred             EEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCC
Q 017476          199 WVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIP  278 (371)
Q Consensus       199 VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~  278 (371)
                      |+|++||.|.+.+.+.+.  .--.+.++|+++.+++.-+.|..     +  .++.+|+.+........+|+++.-||+-+
T Consensus         1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~-----~--~~~~~Di~~~~~~~~~~~dvl~gg~PCq~   71 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFG-----N--KVPFGDITKISPSDIPDFDILLGGFPCQP   71 (315)
T ss_pred             CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCC-----C--CCCccChhhhhhhhCCCcCEEEecCCCcc
Confidence            589999999999999764  22346789999999999888852     2  34557765432111236899999999865


Q ss_pred             CC
Q 017476          279 SD  280 (371)
Q Consensus       279 ~~  280 (371)
                      .+
T Consensus        72 fS   73 (315)
T TIGR00675        72 FS   73 (315)
T ss_pred             cc
Confidence            44

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=95.18  E-value=0.022  Score=54.19  Aligned_cols=102  Identities=18%  Similarity=0.102  Sum_probs=71.1

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCC
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP  275 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPP  275 (371)
                      +..++|.|||.|-...     ..|...++|.|++...+..|++-    |   ......+|+... +.....||.+++   
T Consensus        46 gsv~~d~gCGngky~~-----~~p~~~~ig~D~c~~l~~~ak~~----~---~~~~~~ad~l~~-p~~~~s~d~~ls---  109 (293)
T KOG1331|consen   46 GSVGLDVGCGNGKYLG-----VNPLCLIIGCDLCTGLLGGAKRS----G---GDNVCRADALKL-PFREESFDAALS---  109 (293)
T ss_pred             cceeeecccCCcccCc-----CCCcceeeecchhhhhccccccC----C---CceeehhhhhcC-CCCCCccccchh---
Confidence            5689999999997653     12566899999999988887642    2   125777787653 333578998887   


Q ss_pred             CCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcC
Q 017476          276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEK  333 (371)
Q Consensus       276 Yi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~  333 (371)
                         ...++++....++                 ..++++..+.|+|||...+-.-+..
T Consensus       110 ---iavihhlsT~~RR-----------------~~~l~e~~r~lrpgg~~lvyvwa~~  147 (293)
T KOG1331|consen  110 ---IAVIHHLSTRERR-----------------ERALEELLRVLRPGGNALVYVWALE  147 (293)
T ss_pred             ---hhhhhhhhhHHHH-----------------HHHHHHHHHHhcCCCceEEEEehhh
Confidence               3444555444333                 2678888899999999887664433

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=95.04  E-value=0.092  Score=51.64  Aligned_cols=93  Identities=14%  Similarity=0.192  Sum_probs=63.7

Q ss_pred             CCCCCCeEEEECCc-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE---cCcccccccCCCce
Q 017476          192 DGLRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ---GSWFGKLKDVEGKL  267 (371)
Q Consensus       192 ~~~~~~~VLDlG~G-sG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~---gD~~~~l~~~~~~f  267 (371)
                      +..++++|+=.|+| .|.+++.+|+.+  +++|+++|.+++-++.|++-    |..   .++.   .|..+.+.   +.|
T Consensus       163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~--ga~Via~~~~~~K~e~a~~l----GAd---~~i~~~~~~~~~~~~---~~~  230 (339)
T COG1064         163 NVKPGKWVAVVGAGGLGHMAVQYAKAM--GAEVIAITRSEEKLELAKKL----GAD---HVINSSDSDALEAVK---EIA  230 (339)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHc--CCeEEEEeCChHHHHHHHHh----CCc---EEEEcCCchhhHHhH---hhC
Confidence            34457788887776 557899999976  49999999999999988764    322   3333   33333332   359


Q ss_pred             eEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          268 SGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       268 DlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      |+|+.-=|                                 ..-++.+.+.|++||.+++.-
T Consensus       231 d~ii~tv~---------------------------------~~~~~~~l~~l~~~G~~v~vG  259 (339)
T COG1064         231 DAIIDTVG---------------------------------PATLEPSLKALRRGGTLVLVG  259 (339)
T ss_pred             cEEEECCC---------------------------------hhhHHHHHHHHhcCCEEEEEC
Confidence            99987211                                 034456668899999988864

>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]

Probab=94.90  E-value=0.7  Score=43.41  Aligned_cols=118  Identities=19%  Similarity=0.250  Sum_probs=81.2

Q ss_pred             EEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---cCCCceeEEEEcCCC
Q 017476          200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---DVEGKLSGVVSNPPY  276 (371)
Q Consensus       200 LDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---~~~~~fDlIvsNPPY  276 (371)
                      |..-+||-.++..+.+.   .-++.++|+.+.-....++|+.   -..++++.++|-+..+.   ...++=-+|+.+|||
T Consensus        93 l~~YpGSP~lA~~llR~---qDRl~l~ELHp~D~~~L~~~f~---~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPf  166 (279)
T COG2961          93 LRYYPGSPLLARQLLRE---QDRLVLTELHPSDAPLLRNNFA---GDRRVRVLRGDGFLALKAHLPPKERRGLVLIDPPF  166 (279)
T ss_pred             cccCCCCHHHHHHHcch---hceeeeeecCccHHHHHHHHhC---CCcceEEEecCcHHHHhhhCCCCCcceEEEeCCCc
Confidence            89999999999988874   5689999999999888888876   23469999999876432   123566799999999


Q ss_pred             CCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccc--cCcEEEEEECCcCcHHHHHHHHhccccCCc
Q 017476          277 IPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLK--PGGFFAFETNGEKQCKFLKNYLENDSACSF  350 (371)
Q Consensus       277 i~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~Lk--pgG~lvle~~~~~q~~~v~~~l~~~~~~gf  350 (371)
                      -..++                          |..+++...+.++  ++|..++=- ...+.+.+++++++.++-+.
T Consensus       167 E~~~e--------------------------Y~rvv~~l~~~~kRf~~g~yaiWY-Pik~r~~~~~f~~~L~~~~i  215 (279)
T COG2961         167 ELKDE--------------------------YQRVVEALAEAYKRFATGTYAIWY-PIKDRRQIRRFLRALEALGI  215 (279)
T ss_pred             ccccH--------------------------HHHHHHHHHHHHHhhcCceEEEEE-eecchHHHHHHHHHHhhcCc
Confidence            64332                          3344443333333  556655544 24566667777776544444

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=94.83  E-value=0.016  Score=55.41  Aligned_cols=73  Identities=19%  Similarity=0.190  Sum_probs=58.6

Q ss_pred             CCeEEEECCcccHHHH-HHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEE
Q 017476          196 DGFWVDLGTGSGAIAI-GIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS  272 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al-~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvs  272 (371)
                      +..|+|+.+|.|++++ .+...  ....|+|.|.+|.+++..++|++.|+..++..++.||-...-.  ....|-|..
T Consensus       195 ~eviVDLYAGIGYFTlpflV~a--gAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~--~~~AdrVnL  268 (351)
T KOG1227|consen  195 GEVIVDLYAGIGYFTLPFLVTA--GAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP--RLRADRVNL  268 (351)
T ss_pred             cchhhhhhcccceEEeehhhcc--CccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc--cccchheee
Confidence            4689999999999999 55543  5678999999999999999999999988888888888654322  355665543

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=94.72  E-value=0.049  Score=49.33  Aligned_cols=56  Identities=20%  Similarity=0.328  Sum_probs=32.9

Q ss_pred             eeEEEEcCCCCCCCCc---ccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCc
Q 017476          267 LSGVVSNPPYIPSDDI---SGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGE  332 (371)
Q Consensus       267 fDlIvsNPPYi~~~~~---~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~  332 (371)
                      .|+|+.+|||....+.   ..... -..+         .+=++.+..++.++.++|||||.+++.++..
T Consensus         1 VdliitDPPY~~~~~~~~~~~~~~-~~~~---------~~y~~~~~~~~~~~~rvLk~~g~~~i~~~~~   59 (231)
T PF01555_consen    1 VDLIITDPPYNIGKDYNNYFDYGD-NKNH---------EEYLEWMEEWLKECYRVLKPGGSIFIFIDDR   59 (231)
T ss_dssp             EEEEEE---TSSSCS-----CSCH-CCHH---------HHHHHHHHHHHHHHHHHEEEEEEEEEEE-CC
T ss_pred             CCEEEECCCCCCCCCcchhhhccC-CCCH---------HHHHHHHHHHHHHHHhhcCCCeeEEEEecch
Confidence            5999999999755441   00000 0000         0114566788999999999999999998543

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=94.20  E-value=1.1  Score=41.16  Aligned_cols=76  Identities=17%  Similarity=0.168  Sum_probs=56.4

Q ss_pred             CCCeEEEECCccc----HHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccc-ccccCCCceeE
Q 017476          195 RDGFWVDLGTGSG----AIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG-KLKDVEGKLSG  269 (371)
Q Consensus       195 ~~~~VLDlG~GsG----~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~-~l~~~~~~fDl  269 (371)
                      ..+.+++.+|+.|    .++++.|.+ +.++++++|-.+++.+...++.+...++.+.++|+.++-.+ .+... ...|+
T Consensus        41 nAkliVe~~s~g~~~~ttiaLaaAAr-~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~-~~iDF  118 (218)
T PF07279_consen   41 NAKLIVEAWSSGGAISTTIALAAAAR-QTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGL-KGIDF  118 (218)
T ss_pred             cceEEEEEecCCCchHhHHHHHHHHH-hcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhc-cCCCE
Confidence            3568999976644    455555555 37889999999999988888888888888778999988543 33333 46888


Q ss_pred             EEE
Q 017476          270 VVS  272 (371)
Q Consensus       270 Ivs  272 (371)
                      ++.
T Consensus       119 ~vV  121 (218)
T PF07279_consen  119 VVV  121 (218)
T ss_pred             EEE
Confidence            886

The function of this family is unknown.

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=93.69  E-value=0.38  Score=44.99  Aligned_cols=106  Identities=18%  Similarity=0.182  Sum_probs=71.0

Q ss_pred             CCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc--CCCceeEE
Q 017476          193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD--VEGKLSGV  270 (371)
Q Consensus       193 ~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~--~~~~fDlI  270 (371)
                      ..++.+||=||+++|..--.++.-.+|..-|+|||.|+..=.... |+.+.. + +|-.+..|+.-+.+.  +-+-.|+|
T Consensus       154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~-nmAkkR-t-NiiPIiEDArhP~KYRmlVgmVDvI  230 (317)
T KOG1596|consen  154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLI-NMAKKR-T-NIIPIIEDARHPAKYRMLVGMVDVI  230 (317)
T ss_pred             ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHH-HHhhcc-C-CceeeeccCCCchheeeeeeeEEEE
Confidence            346789999999999998888888889999999999985533222 222111 2 366666676554332  13568999


Q ss_pred             EEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       271 vsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      +++-+-                 |           +..+.+.-+|...||+||.+++.+
T Consensus       231 FaDvaq-----------------p-----------dq~RivaLNA~~FLk~gGhfvisi  261 (317)
T KOG1596|consen  231 FADVAQ-----------------P-----------DQARIVALNAQYFLKNGGHFVISI  261 (317)
T ss_pred             eccCCC-----------------c-----------hhhhhhhhhhhhhhccCCeEEEEE
Confidence            985221                 1           112234446778999999999976

>PRK10458 DNA cytosine methylase; Provisional

Probab=93.50  E-value=0.58  Score=48.22  Aligned_cols=81  Identities=14%  Similarity=0.012  Sum_probs=55.0

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc--------------
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK--------------  261 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~--------------  261 (371)
                      .-+++|++||.|.+.+.+-..  ..-.|.++|+++.|.+.-+.|....  + ....+.+|+.+...              
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~a--G~~~v~a~Eid~~A~~TY~~N~~~~--p-~~~~~~~DI~~i~~~~~~~~~~~~~~~~  162 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAI--GGQCVFTSEWNKHAVRTYKANWYCD--P-ATHRFNEDIRDITLSHKEGVSDEEAAEH  162 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHc--CCEEEEEEechHHHHHHHHHHcCCC--C-ccceeccChhhCccccccccchhhhhhh
Confidence            458999999999999998664  3346789999999999888874211  1 13344455433210              


Q ss_pred             --cCCCceeEEEEcCCCCCCCC
Q 017476          262 --DVEGKLSGVVSNPPYIPSDD  281 (371)
Q Consensus       262 --~~~~~fDlIvsNPPYi~~~~  281 (371)
                        .....+|+++.-||+-+-+.
T Consensus       163 ~~~~~p~~DvL~gGpPCQ~FS~  184 (467)
T PRK10458        163 IRQHIPDHDVLLAGFPCQPFSL  184 (467)
T ss_pred             hhccCCCCCEEEEcCCCCccch
Confidence              01136899999999876443

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=93.49  E-value=0.18  Score=48.49  Aligned_cols=114  Identities=16%  Similarity=0.193  Sum_probs=83.0

Q ss_pred             CCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc--CCC-CcEEEEEcCcccccccC-CCcee
Q 017476          193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY--GLQ-DIIEIRQGSWFGKLKDV-EGKLS  268 (371)
Q Consensus       193 ~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~--gl~-~~v~~~~gD~~~~l~~~-~~~fD  268 (371)
                      ...++++|-+|-|.|......++. ..-.+++-+|++...++..++-....  |.+ .++.++-||-+..+... .++||
T Consensus       119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d  197 (337)
T KOG1562|consen  119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD  197 (337)
T ss_pred             CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence            345789999999999998888876 34568999999999999988866533  332 46999999988766654 57899


Q ss_pred             EEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          269 GVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       269 lIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      +|+.+     .++.  .       -|..+        .+-+.+++...+.||+||+++..-
T Consensus       198 Vii~d-----ssdp--v-------gpa~~--------lf~~~~~~~v~~aLk~dgv~~~q~  236 (337)
T KOG1562|consen  198 VIITD-----SSDP--V-------GPACA--------LFQKPYFGLVLDALKGDGVVCTQG  236 (337)
T ss_pred             EEEEe-----cCCc--c-------chHHH--------HHHHHHHHHHHHhhCCCcEEEEec
Confidence            99983     1111  0       01111        223467888889999999998865

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=93.40  E-value=0.36  Score=47.66  Aligned_cols=66  Identities=20%  Similarity=0.192  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHh---C----CCcEEEEEeCCHHHHHHHHHHHHHc
Q 017476          177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVL---G----SKGSIIAVDLNPLAAAVAAFNAQRY  243 (371)
Q Consensus       177 e~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~---~----~~~~V~gvDis~~al~~A~~n~~~~  243 (371)
                      |++..++++.+ .....+.+-.++++|.|+|.++..+.+.+   .    ...++.-||.|++..+.=+++++..
T Consensus        60 ella~~~~~~w-q~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~  132 (370)
T COG1565          60 ELLAEQFLQLW-QELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT  132 (370)
T ss_pred             HHHHHHHHHHH-HHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence            45556666555 33333445689999999999998887753   2    2568999999998877766666544

>PTZ00357 methyltransferase; Provisional

Probab=93.34  E-value=0.3  Score=51.90  Aligned_cols=75  Identities=23%  Similarity=0.144  Sum_probs=50.9

Q ss_pred             eEEEECCcccHHHHHH---HHHhCCCcEEEEEeCCHHHHHHHHHHHHH-cCC-------CCcEEEEEcCccccccc----
Q 017476          198 FWVDLGTGSGAIAIGI---ARVLGSKGSIIAVDLNPLAAAVAAFNAQR-YGL-------QDIIEIRQGSWFGKLKD----  262 (371)
Q Consensus       198 ~VLDlG~GsG~~al~l---a~~~~~~~~V~gvDis~~al~~A~~n~~~-~gl-------~~~v~~~~gD~~~~l~~----  262 (371)
                      .|+-+|+|-|-+.-..   ++..+-..+|++||.|+.++.+...+.++ ...       .++|+++.+|+.+....    
T Consensus       703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~  782 (1072)
T PTZ00357        703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG  782 (1072)
T ss_pred             EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence            5899999999764443   34334456899999997766565555422 223       34699999999764221    


Q ss_pred             ------CCCceeEEEE
Q 017476          263 ------VEGKLSGVVS  272 (371)
Q Consensus       263 ------~~~~fDlIvs  272 (371)
                            ..+++|+|||
T Consensus       783 s~~~P~~~gKaDIVVS  798 (1072)
T PTZ00357        783 SLTLPADFGLCDLIVS  798 (1072)
T ss_pred             cccccccccccceehH
Confidence                  1247999998

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=93.29  E-value=0.041  Score=55.05  Aligned_cols=63  Identities=24%  Similarity=0.148  Sum_probs=55.8

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCc-EEEEEcCccccc
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDI-IEIRQGSWFGKL  260 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~-v~~~~gD~~~~l  260 (371)
                      .+..|.|++||.|-+++.+++.   +.+|++-|++++++++.+.|+..+.+.+. ++++..|.-+.+
T Consensus       249 ~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl  312 (495)
T KOG2078|consen  249 PGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL  312 (495)
T ss_pred             CcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence            4668999999999999999985   48999999999999999999999988765 888888876655

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=93.20  E-value=0.25  Score=46.42  Aligned_cols=47  Identities=21%  Similarity=0.251  Sum_probs=36.3

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCC-------CcEEEEEeCCHHHHHHHHHHHHH
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGS-------KGSIIAVDLNPLAAAVAAFNAQR  242 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~-------~~~V~gvDis~~al~~A~~n~~~  242 (371)
                      +-+|+|+|.|+|.++..+.+.+..       ..+++-||.|+...+.-++++..
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            469999999999999999987632       24899999999888777777654

; PDB: 4F3N_A 1ZKD_B.

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=93.17  E-value=0.51  Score=44.52  Aligned_cols=126  Identities=21%  Similarity=0.249  Sum_probs=72.1

Q ss_pred             CCeEEEECCcccHHHHHHHHHh---C-CCcEEEEEeCC--------------------------HHHHHHHHHHHHHcCC
Q 017476          196 DGFWVDLGTGSGAIAIGIARVL---G-SKGSIIAVDLN--------------------------PLAAAVAAFNAQRYGL  245 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~---~-~~~~V~gvDis--------------------------~~al~~A~~n~~~~gl  245 (371)
                      ++-|+|+||-.|..++.++..+   + ++.++++.|-=                          ...++..++|+.++|+
T Consensus        75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl  154 (248)
T PF05711_consen   75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL  154 (248)
T ss_dssp             -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred             CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence            5689999999998776665432   1 34568887741                          1235556666666664


Q ss_pred             -CCcEEEEEcCcccccccC-CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCc
Q 017476          246 -QDIIEIRQGSWFGKLKDV-EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGG  323 (371)
Q Consensus       246 -~~~v~~~~gD~~~~l~~~-~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG  323 (371)
                       .+++++++|.+.+.++.. .+++-++..+               +-.|             +-....|+..+..|.|||
T Consensus       155 ~~~~v~~vkG~F~dTLp~~p~~~IAll~lD---------------~DlY-------------esT~~aLe~lyprl~~GG  206 (248)
T PF05711_consen  155 LDDNVRFVKGWFPDTLPDAPIERIALLHLD---------------CDLY-------------ESTKDALEFLYPRLSPGG  206 (248)
T ss_dssp             SSTTEEEEES-HHHHCCC-TT--EEEEEE------------------SH-------------HHHHHHHHHHGGGEEEEE
T ss_pred             CcccEEEECCcchhhhccCCCccEEEEEEe---------------ccch-------------HHHHHHHHHHHhhcCCCe
Confidence             457999999987766542 2344444331               1123             335578888899999999


Q ss_pred             EEEEEECCc-CcHHHHHHHHhccccCCcee
Q 017476          324 FFAFETNGE-KQCKFLKNYLENDSACSFCN  352 (371)
Q Consensus       324 ~lvle~~~~-~q~~~v~~~l~~~~~~gf~~  352 (371)
                      ++++.--+. ...++|.+++++   .|...
T Consensus       207 iIi~DDY~~~gcr~AvdeF~~~---~gi~~  233 (248)
T PF05711_consen  207 IIIFDDYGHPGCRKAVDEFRAE---HGITD  233 (248)
T ss_dssp             EEEESSTTTHHHHHHHHHHHHH---TT--S
T ss_pred             EEEEeCCCChHHHHHHHHHHHH---cCCCC
Confidence            999976433 123456666664   44543

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>KOG3350 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.17  E-value=2.2  Score=38.13  Aligned_cols=160  Identities=12%  Similarity=0.127  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHhhcCCceeeEee--cccccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHH
Q 017476          133 DELYGLWKQRIEKRKPFQYLVG--CEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIA  210 (371)
Q Consensus       133 ~~~~~~~~~r~~~~~P~~yi~g--~~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~a  210 (371)
                      ++++..=.+|....++..++++  ...|.--.|.-+      +...+.+++......      ..+.+|.=+.|-|=.+-
T Consensus        21 ~eF~aEq~k~~e~~~~~~~~i~~~~eDwQlsqfwy~------~eta~~La~e~v~~s------~e~~rIacvS~Psly~y   88 (217)
T KOG3350|consen   21 NEFLAEQQKRIEEEENQSDIIEKIGEDWQLSQFWYS------DETARKLAAERVEAS------GEGSRIACVSCPSLYVY   88 (217)
T ss_pred             HHHHHHHHhhhhccCchhhhhhhcccchhhhhhhcC------HHHHHHHHHHHHhhc------ccCceEEEEeCchHHhh
Confidence            3444444455555566655555  234431111111      223344555544432      13457777777664421


Q ss_pred             HHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc---CCCceeEEEEcCCCCCCCCcccchh
Q 017476          211 IGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD---VEGKLSGVVSNPPYIPSDDISGLQV  287 (371)
Q Consensus       211 l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~---~~~~fDlIvsNPPYi~~~~~~~l~~  287 (371)
                      ...-..--|.-+|+-.|.+...        ..+|    -+|+.-|...++..   +.+.||+||.+|||....       
T Consensus        89 ~k~re~~~~~~~v~lfEfDkRF--------e~yg----~eFvfYDyN~p~dlp~~lk~~fdiivaDPPfL~~e-------  149 (217)
T KOG3350|consen   89 QKKREIEIPHDQVYLFEFDKRF--------ELYG----TEFVFYDYNCPLDLPDELKAHFDIIVADPPFLSEE-------  149 (217)
T ss_pred             hhhhhccCCceeEEEEEehhhH--------Hhcc----ceeEEeccCCCCCCHHHHHhcccEEEeCCccccch-------
Confidence            1111110145688888887643        3444    46777777655432   246899999999997532       


Q ss_pred             hhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHh
Q 017476          288 EVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLE  343 (371)
Q Consensus       288 ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~  343 (371)
                                         ++..-...+..+.++.-.+++.+ |..-.+...+++.
T Consensus       150 -------------------Cl~Kts~tik~L~r~~~kvilCt-Geimee~~s~~l~  185 (217)
T KOG3350|consen  150 -------------------CLAKTSETIKRLQRNQKKVILCT-GEIMEEWASALLP  185 (217)
T ss_pred             -------------------hhhhhHHHHHHHhcCCceEEEec-hhHhHHHHHHHhh
Confidence                               23344445556677777788877 4444444444443

>COG4889 Predicted helicase [General function prediction only]

Probab=92.96  E-value=0.56  Score=51.19  Aligned_cols=164  Identities=18%  Similarity=0.243  Sum_probs=88.0

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCC--------CcEEEEEeCCHHHHHHHHHHHHHc--CCCCcE----EEEEcCccccc
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGS--------KGSIIAVDLNPLAAAVAAFNAQRY--GLQDII----EIRQGSWFGKL  260 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~--------~~~V~gvDis~~al~~A~~n~~~~--gl~~~v----~~~~gD~~~~l  260 (371)
                      .+-+|||..+|||.+...+...+-.        ....+|.||---+.-+|.-|+...  ++....    .+..+|-++.+
T Consensus       845 ~~vhilDpFtGTGtFi~RlL~alIs~edl~rKf~~eLhA~eIvLLsYYIAaiNIe~t~~~~~gd~~~F~giaLtDtf~~~  924 (1518)
T COG4889         845 QSVHILDPFTGTGTFIVRLLSALISDEDLKRKFQKELHAFEIVLLSYYIAAINIEQTAQNRDGDLKNFKGIALTDTFDYL  924 (1518)
T ss_pred             CCeeeecCCCCccHHHHHHHHHhcCHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHhhhhcCCcccCCCceecchhhhh
Confidence            4568999999999988776543200        224677777655556666666532  111000    11222222211


Q ss_pred             c------------------cCCCceeEEEEcCCCCCCCCc-ccchhhhcccCc-------cccc---cC-CCCcHHHHHH
Q 017476          261 K------------------DVEGKLSGVVSNPPYIPSDDI-SGLQVEVGKHEP-------RLAL---DG-GVDGLDYLLH  310 (371)
Q Consensus       261 ~------------------~~~~~fDlIvsNPPYi~~~~~-~~l~~ev~~~ep-------~~aL---~g-g~dGl~~~~~  310 (371)
                      +                  ...-+.-+|+.||||.....- ......+ .|.-       ..+-   .. -..-.+.|-+
T Consensus       925 Eed~~d~~~f~~n~erlkrq~~ipI~VIiGNPPYS~gqks~ndnn~nl-~ypkLd~rv~~sy~k~STA~nknsl~Dsyir 1003 (1518)
T COG4889         925 EEDTLDGDIFGYNNERLKRQKEIPIRVIIGNPPYSAGQKSENDNNQNL-SYPKLDKRVYESYGKNSTATNKNSLRDSYIR 1003 (1518)
T ss_pred             ccccccccccCccHHHHHhhcCCceEEEeCCCCCcccccCcCcccccc-ccchHHHHHHHHHhccchhhcccchHHHHHH
Confidence            1                  012357899999999743221 1111111 1100       0000   00 1122466778


Q ss_pred             HHHHHhcccccCcEEEEEECCc----CcHHHHHHHHhccccCCceeEEEEecCCCCce
Q 017476          311 LCNGTASMLKPGGFFAFETNGE----KQCKFLKNYLENDSACSFCNVSIVSDFAGIQR  364 (371)
Q Consensus       311 il~~a~~~LkpgG~lvle~~~~----~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R  364 (371)
                      .++-+...++.+|++-|..+|.    ..++-++.-+.+    .|.++-++. +.|+.|
T Consensus      1004 a~RwasDri~d~GVigFV~NggfIDgnsaDG~R~sla~----dfs~iYvlN-LrGn~R 1056 (1518)
T COG4889        1004 AIRWASDRIKDNGVIGFVVNGGFIDGNSADGFRKSLAQ----DFSHIYVLN-LRGNQR 1056 (1518)
T ss_pred             HHHHHhhhcccCceEEEEecCceecCccchHHHHHHHH----HhhhheEEe-ccCCcc
Confidence            8888999999999999988632    244556666653    366655443 555555

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=92.49  E-value=0.88  Score=47.37  Aligned_cols=44  Identities=27%  Similarity=0.298  Sum_probs=36.7

Q ss_pred             CCCCCeEEEECCc-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476          193 GLRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       193 ~~~~~~VLDlG~G-sG~~al~la~~~~~~~~V~gvDis~~al~~A~~  238 (371)
                      ..++.+|+=+|+| .|..++..|+.+  +++|+++|.+++.++.+++
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~l--GA~V~a~D~~~~rle~aes  206 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSL--GAIVRAFDTRPEVAEQVES  206 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence            3467899999999 577888888876  4689999999999888775

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=92.36  E-value=0.23  Score=40.65  Aligned_cols=33  Identities=21%  Similarity=0.207  Sum_probs=26.9

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCH
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNP  230 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~  230 (371)
                      +....+|+|||.|.+.--|.++   +...+|+|.-.
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~E---Gy~G~GiD~R~   90 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSE---GYPGWGIDARR   90 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhC---CCCcccccccc
Confidence            4568999999999998888775   56789999744

; GO: 0008168 methyltransferase activity

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=92.21  E-value=0.32  Score=40.95  Aligned_cols=65  Identities=25%  Similarity=0.336  Sum_probs=36.4

Q ss_pred             CCeEEEECCcccH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEE-c
Q 017476          196 DGFWVDLGTGSGA-IAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS-N  273 (371)
Q Consensus       196 ~~~VLDlG~GsG~-~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvs-N  273 (371)
                      ..+|+++|-|.=. .+..|++.   +..|+++|+++.       ++. .|    +.++..|.+++-...-...|+|.| |
T Consensus        14 ~~kiVEVGiG~~~~vA~~L~~~---G~dV~~tDi~~~-------~a~-~g----~~~v~DDif~P~l~iY~~a~lIYSiR   78 (127)
T PF03686_consen   14 YGKIVEVGIGFNPEVAKKLKER---GFDVIATDINPR-------KAP-EG----VNFVVDDIFNPNLEIYEGADLIYSIR   78 (127)
T ss_dssp             SSEEEEET-TT--HHHHHHHHH---S-EEEEE-SS-S------------S----TTEE---SSS--HHHHTTEEEEEEES
T ss_pred             CCcEEEECcCCCHHHHHHHHHc---CCcEEEEECccc-------ccc-cC----cceeeecccCCCHHHhcCCcEEEEeC
Confidence            3499999999765 45555553   479999999997       222 23    779999999875444457899999 6


Q ss_pred             CC
Q 017476          274 PP  275 (371)
Q Consensus       274 PP  275 (371)
                      ||
T Consensus        79 PP   80 (127)
T PF03686_consen   79 PP   80 (127)
T ss_dssp             --
T ss_pred             CC
Confidence            76

; PDB: 2K4M_A.

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=91.89  E-value=0.44  Score=47.48  Aligned_cols=95  Identities=16%  Similarity=0.300  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-------CC-CCc
Q 017476          177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY-------GL-QDI  248 (371)
Q Consensus       177 e~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~-------gl-~~~  248 (371)
                      |...+.+.... .+.+..+.....|+|.|.|.....+|... ....-+|+++.+..-+.|..|...+       |- .+.
T Consensus       175 E~~~~ql~si~-dEl~~g~~D~F~DLGSGVGqlv~~~aa~a-~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~  252 (419)
T KOG3924|consen  175 ETQLEQLRSIV-DELKLGPADVFMDLGSGVGQLVCFVAAYA-GCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNK  252 (419)
T ss_pred             hhhHHHHHHHH-HHhccCCCCcccCCCcccchhhHHHHHhh-ccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCc
Confidence            44444444444 33345567789999999999988888753 5567889999888887777765432       33 456


Q ss_pred             EEEEEcCcccccc--cCCCceeEEEEc
Q 017476          249 IEIRQGSWFGKLK--DVEGKLSGVVSN  273 (371)
Q Consensus       249 v~~~~gD~~~~l~--~~~~~fDlIvsN  273 (371)
                      ++.+++++..+-.  ......++|++|
T Consensus       253 ~~~i~gsf~~~~~v~eI~~eatvi~vN  279 (419)
T KOG3924|consen  253 IETIHGSFLDPKRVTEIQTEATVIFVN  279 (419)
T ss_pred             eeecccccCCHHHHHHHhhcceEEEEe
Confidence            8999999876421  223568899986

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=91.63  E-value=0.15  Score=42.12  Aligned_cols=88  Identities=18%  Similarity=0.306  Sum_probs=56.9

Q ss_pred             cccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccC--CCceeEEEEcCCCCCCCCc
Q 017476          205 GSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV--EGKLSGVVSNPPYIPSDDI  282 (371)
Q Consensus       205 GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~--~~~fDlIvsNPPYi~~~~~  282 (371)
                      |.|..++.+|+..  +.+|+++|.++..++.+++    .|...-+.....|+.+.+...  ...+|+|+-...       
T Consensus         1 ~vG~~a~q~ak~~--G~~vi~~~~~~~k~~~~~~----~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g-------   67 (130)
T PF00107_consen    1 GVGLMAIQLAKAM--GAKVIATDRSEEKLELAKE----LGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG-------   67 (130)
T ss_dssp             HHHHHHHHHHHHT--TSEEEEEESSHHHHHHHHH----TTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS-------
T ss_pred             ChHHHHHHHHHHc--CCEEEEEECCHHHHHHHHh----hcccccccccccccccccccccccccceEEEEecC-------
Confidence            5689999999986  3999999999999888765    443211111112222222221  236999885211       


Q ss_pred             ccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC
Q 017476          283 SGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN  330 (371)
Q Consensus       283 ~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~  330 (371)
                                               ....++.+.+.|+++|.+++.-.
T Consensus        68 -------------------------~~~~~~~~~~~l~~~G~~v~vg~   90 (130)
T PF00107_consen   68 -------------------------SGDTLQEAIKLLRPGGRIVVVGV   90 (130)
T ss_dssp             -------------------------SHHHHHHHHHHEEEEEEEEEESS
T ss_pred             -------------------------cHHHHHHHHHHhccCCEEEEEEc
Confidence                                     01466777789999999998763

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=91.20  E-value=0.77  Score=44.80  Aligned_cols=46  Identities=17%  Similarity=0.195  Sum_probs=40.0

Q ss_pred             CCCCCCeEEEECCc-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476          192 DGLRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       192 ~~~~~~~VLDlG~G-sG~~al~la~~~~~~~~V~gvDis~~al~~A~~  238 (371)
                      +...+.+||=+|+| .|..+...|+.+ ...+|+.+|+++..++.|++
T Consensus       166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~-GA~~VVi~d~~~~Rle~Ak~  212 (354)
T KOG0024|consen  166 GVKKGSKVLVLGAGPIGLLTGLVAKAM-GASDVVITDLVANRLELAKK  212 (354)
T ss_pred             CcccCCeEEEECCcHHHHHHHHHHHHc-CCCcEEEeecCHHHHHHHHH
Confidence            44567899999999 588888889987 66799999999999999997

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=91.03  E-value=1.5  Score=44.90  Aligned_cols=110  Identities=13%  Similarity=0.151  Sum_probs=71.4

Q ss_pred             eEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCC
Q 017476          198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYI  277 (371)
Q Consensus       198 ~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi  277 (371)
                      +++-+|||.-.+...+-+.  .-..|+.+|+|+.+++.+...-.+.  .....+...|.... ...++.||+|+-     
T Consensus        51 ~~l~lGCGNS~l~e~ly~~--G~~dI~~iD~S~V~V~~m~~~~~~~--~~~~~~~~~d~~~l-~fedESFdiVId-----  120 (482)
T KOG2352|consen   51 KILQLGCGNSELSEHLYKN--GFEDITNIDSSSVVVAAMQVRNAKE--RPEMQMVEMDMDQL-VFEDESFDIVID-----  120 (482)
T ss_pred             eeEeecCCCCHHHHHHHhc--CCCCceeccccHHHHHHHHhccccC--CcceEEEEecchhc-cCCCcceeEEEe-----
Confidence            8999999999998888774  4557999999999988765432211  12378888888653 233578999986     


Q ss_pred             CCCCcccc-hhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          278 PSDDISGL-QVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       278 ~~~~~~~l-~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                       .+.+..+ ..+...+-           .......+....+.|++||+++..+
T Consensus       121 -kGtlDal~~de~a~~~-----------~~~v~~~~~eVsrvl~~~gk~~svt  161 (482)
T KOG2352|consen  121 -KGTLDALFEDEDALLN-----------TAHVSNMLDEVSRVLAPGGKYISVT  161 (482)
T ss_pred             -cCccccccCCchhhhh-----------hHHhhHHHhhHHHHhccCCEEEEEE
Confidence             1111111 11111110           0233456778889999999976655

>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]

Probab=90.77  E-value=0.76  Score=45.72  Aligned_cols=88  Identities=15%  Similarity=0.157  Sum_probs=70.6

Q ss_pred             CCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccc-cccCCCceeEEE
Q 017476          193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK-LKDVEGKLSGVV  271 (371)
Q Consensus       193 ~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~-l~~~~~~fDlIv  271 (371)
                      ..++..|+|.+|-.|.-+..+|.-+.+.++++|+|.+.+..+..++-+...|... +....+|+... .+..-...-.|+
T Consensus       211 p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~-~~~~~~df~~t~~~~~~~~v~~iL  289 (413)
T KOG2360|consen  211 PRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSI-VESVEGDFLNTATPEKFRDVTYIL  289 (413)
T ss_pred             CCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCc-cccccccccCCCCcccccceeEEE
Confidence            3456899999999999999998877668899999999999999999998888765 77779998763 222224567899


Q ss_pred             EcCCCCCCCC
Q 017476          272 SNPPYIPSDD  281 (371)
Q Consensus       272 sNPPYi~~~~  281 (371)
                      ++|+...+..
T Consensus       290 ~DpscSgSgm  299 (413)
T KOG2360|consen  290 VDPSCSGSGM  299 (413)
T ss_pred             eCCCCCCCcc
Confidence            9999875543

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=90.10  E-value=3.8  Score=40.33  Aligned_cols=133  Identities=14%  Similarity=0.050  Sum_probs=63.0

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHh---------------CCCcEEEEEeCCHHHHHHHHHHHHHc------CCCCcEEEE
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVL---------------GSKGSIIAVDLNPLAAAVAAFNAQRY------GLQDIIEIR  252 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~---------------~~~~~V~gvDis~~al~~A~~n~~~~------gl~~~v~~~  252 (371)
                      ...-+|+|+||.+|..++.+....               .|..+|+--|+=..=....=+++...      .-.--+.-+
T Consensus        15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv   94 (334)
T PF03492_consen   15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV   94 (334)
T ss_dssp             TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred             CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence            345689999999999888776431               12247888887443222111111111      111124556


Q ss_pred             EcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcc-----cC-ccccccCCC----------CcHHHHHHHHHHHh
Q 017476          253 QGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGK-----HE-PRLALDGGV----------DGLDYLLHLCNGTA  316 (371)
Q Consensus       253 ~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~-----~e-p~~aL~gg~----------dGl~~~~~il~~a~  316 (371)
                      .|+++..+-. .+..|+++|---..+-...   +.++..     +. -......+.          ..-.++..+++.-+
T Consensus        95 pgSFy~rLfP-~~Svh~~~Ss~alHWLS~v---P~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra  170 (334)
T PF03492_consen   95 PGSFYGRLFP-SNSVHFGHSSYALHWLSQV---PEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARA  170 (334)
T ss_dssp             ES-TTS--S--TT-EEEEEEES-TTB-SSS----CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhhhccCC-CCceEEEEEechhhhcccC---CcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence            6788776543 5789999883221111111   011100     00 000000000          01245667888888


Q ss_pred             cccccCcEEEEEEC
Q 017476          317 SMLKPGGFFAFETN  330 (371)
Q Consensus       317 ~~LkpgG~lvle~~  330 (371)
                      +-|+|||.+++...
T Consensus       171 ~ELv~GG~mvl~~~  184 (334)
T PF03492_consen  171 EELVPGGRMVLTFL  184 (334)
T ss_dssp             HHEEEEEEEEEEEE
T ss_pred             heeccCcEEEEEEe
Confidence            89999999999764

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=89.63  E-value=0.96  Score=45.01  Aligned_cols=45  Identities=24%  Similarity=0.260  Sum_probs=36.7

Q ss_pred             CCCCeEEEECCcc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 017476          194 LRDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN  239 (371)
Q Consensus       194 ~~~~~VLDlG~Gs-G~~al~la~~~~~~~~V~gvDis~~al~~A~~n  239 (371)
                      .++.+||..|+|+ |.+++.+|+.. ...+|+++|.+++.++.+++.
T Consensus       183 ~~g~~VlV~g~G~vG~~~~~la~~~-g~~~vi~~~~~~~~~~~~~~~  228 (386)
T cd08283         183 KPGDTVAVWGCGPVGLFAARSAKLL-GAERVIAIDRVPERLEMARSH  228 (386)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHc
Confidence            3567899999988 88999999985 334699999999998887764

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=89.53  E-value=0.43  Score=48.78  Aligned_cols=129  Identities=19%  Similarity=0.149  Sum_probs=81.8

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc------cCCCceeE
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK------DVEGKLSG  269 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~------~~~~~fDl  269 (371)
                      ...+|=+|-|+|.+...+...+ |...+++|+++|.+++.|+++.....-. +.+++-.|..+.+.      ..+..||+
T Consensus       296 ~~~~lvvg~ggG~l~sfl~~~~-p~~~i~~ve~dP~~l~va~q~f~f~q~~-r~~V~i~dGl~~~~~~~k~~~~~~~~dv  373 (482)
T KOG2352|consen  296 GGKQLVVGLGGGGLPSFLHMSL-PKFQITAVEIDPEMLEVATQYFGFMQSD-RNKVHIADGLDFLQRTAKSQQEDICPDV  373 (482)
T ss_pred             cCcEEEEecCCCccccceeeec-CccceeEEEEChhHhhccHhhhchhhhh-hhhhhHhhchHHHHHHhhccccccCCcE
Confidence            4578999999999999888876 7789999999999999999987533211 23444444333221      12357999


Q ss_pred             EEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC--CcCcHHHHHHHHh
Q 017476          270 VVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN--GEKQCKFLKNYLE  343 (371)
Q Consensus       270 IvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~--~~~q~~~v~~~l~  343 (371)
                      ++.+   +++.+.+.++      -|..++        .-..++..+...|.|.|.+.+..-  +..+..+++.-|+
T Consensus       374 l~~d---vds~d~~g~~------~pp~~f--------va~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l~  432 (482)
T KOG2352|consen  374 LMVD---VDSKDSHGMQ------CPPPAF--------VAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNLA  432 (482)
T ss_pred             EEEE---CCCCCcccCc------CCchHH--------HHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhhh
Confidence            9874   1111111111      111111        123677888999999999987652  3345555655554

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=89.43  E-value=1.7  Score=39.51  Aligned_cols=120  Identities=17%  Similarity=0.244  Sum_probs=75.9

Q ss_pred             CCCeEEEECCcccHHHHHHHHH---hCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc-----CCCc
Q 017476          195 RDGFWVDLGTGSGAIAIGIARV---LGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-----VEGK  266 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~---~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~-----~~~~  266 (371)
                      ++..|++.|+--|.-++..|..   ++...+|+++|++-..++-+...     . .+|.|++|+-.++.-.     ....
T Consensus        69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~-p~i~f~egss~dpai~eqi~~~~~~  142 (237)
T COG3510          69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----V-PDILFIEGSSTDPAIAEQIRRLKNE  142 (237)
T ss_pred             CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----C-CCeEEEeCCCCCHHHHHHHHHHhcC
Confidence            4668999999999888887764   34457999999998776544332     2 4599999987654210     1111


Q ss_pred             eeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC--------------Cc
Q 017476          267 LSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN--------------GE  332 (371)
Q Consensus       267 fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~--------------~~  332 (371)
                      +--|+.                         ....++.++....-++....+|.-|-++++|..              |.
T Consensus       143 y~kIfv-------------------------ilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp~~~~p~~~g~  197 (237)
T COG3510         143 YPKIFV-------------------------ILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLPGPVLPWRFGG  197 (237)
T ss_pred             CCcEEE-------------------------EecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCCCCcccchhcCC
Confidence            111111                         111122344445556666788899999999753              34


Q ss_pred             CcHHHHHHHHhcc
Q 017476          333 KQCKFLKNYLEND  345 (371)
Q Consensus       333 ~q~~~v~~~l~~~  345 (371)
                      ...++|..+++..
T Consensus       198 gP~~AVe~ylr~~  210 (237)
T COG3510         198 GPYEAVEAYLREF  210 (237)
T ss_pred             ChHHHHHHHHHhC
Confidence            4567788888764

>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted

Probab=89.38  E-value=0.39  Score=45.19  Aligned_cols=76  Identities=24%  Similarity=0.357  Sum_probs=44.4

Q ss_pred             EEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---cCCCceeEEEEcCCC
Q 017476          200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---DVEGKLSGVVSNPPY  276 (371)
Q Consensus       200 LDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---~~~~~fDlIvsNPPY  276 (371)
                      +..-.||=.++..+.+   +.-+.+.+|+.+...+..++|+..   ..++++++.|.++.+.   ....+=-+|+.+|||
T Consensus        62 l~~YPGSP~ia~~llR---~qDrl~l~ELHp~d~~~L~~~~~~---~~~v~v~~~DG~~~l~allPP~~rRglVLIDPpY  135 (245)
T PF04378_consen   62 LRFYPGSPAIAARLLR---EQDRLVLFELHPQDFEALKKNFRR---DRRVRVHHRDGYEGLKALLPPPERRGLVLIDPPY  135 (245)
T ss_dssp             --EEE-HHHHHHHHS----TTSEEEEE--SHHHHHHHTTS--T---TS-EEEE-S-HHHHHHHH-S-TTS-EEEEE----
T ss_pred             cCcCCCCHHHHHHhCC---ccceEEEEecCchHHHHHHHHhcc---CCccEEEeCchhhhhhhhCCCCCCCeEEEECCCC
Confidence            6778888888888876   457999999999999999888764   2469999999887432   223456799999999


Q ss_pred             CCCCC
Q 017476          277 IPSDD  281 (371)
Q Consensus       277 i~~~~  281 (371)
                      -..++
T Consensus       136 E~~~d  140 (245)
T PF04378_consen  136 EQKDD  140 (245)
T ss_dssp             -STTH
T ss_pred             CCchH
Confidence            65433

; PDB: 2OO3_A.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=89.29  E-value=0.86  Score=45.03  Aligned_cols=43  Identities=33%  Similarity=0.486  Sum_probs=36.6

Q ss_pred             CCCeEEEECCcc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476          195 RDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       195 ~~~~VLDlG~Gs-G~~al~la~~~~~~~~V~gvDis~~al~~A~~  238 (371)
                      .+.+|+=+|||. |.+++.+++.+ ...+|+++|.+++-++.|++
T Consensus       168 ~~~~V~V~GaGpIGLla~~~a~~~-Ga~~Viv~d~~~~Rl~~A~~  211 (350)
T COG1063         168 PGGTVVVVGAGPIGLLAIALAKLL-GASVVIVVDRSPERLELAKE  211 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHHHHH
Confidence            344899999994 77788888875 66799999999999999987

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=89.25  E-value=1.3  Score=43.09  Aligned_cols=43  Identities=19%  Similarity=0.325  Sum_probs=31.5

Q ss_pred             CCCeEEEECCc-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476          195 RDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       195 ~~~~VLDlG~G-sG~~al~la~~~~~~~~V~gvDis~~al~~A~~  238 (371)
                      ++.+||=.|+| .|.+++.+|+.. ...+|+++|.+++.++.|++
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~-G~~~Vi~~~~~~~~~~~a~~  212 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTL-GAAEIVCADVSPRSLSLARE  212 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHHHH
Confidence            46788888875 455667777764 22379999999999888764

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=88.52  E-value=5.2  Score=37.28  Aligned_cols=79  Identities=16%  Similarity=0.153  Sum_probs=49.0

Q ss_pred             CCCeEEEECCcc-cHHHHHHHHHhC-CCcEEEEEeCCH---HHHHHHHHHHHHcCCCCcEEEEEcCcccccc--------
Q 017476          195 RDGFWVDLGTGS-GAIAIGIARVLG-SKGSIIAVDLNP---LAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK--------  261 (371)
Q Consensus       195 ~~~~VLDlG~Gs-G~~al~la~~~~-~~~~V~gvDis~---~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~--------  261 (371)
                      .+++++=.|.++ +.++.++++.+. .+++|+.++.+.   +.++...   .... ..++.+++.|+.+.-.        
T Consensus         6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~---~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~   81 (257)
T PRK08594          6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELA---DTLE-GQESLLLPCDVTSDEEITACFETI   81 (257)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHH---HHcC-CCceEEEecCCCCHHHHHHHHHHH
Confidence            356889889873 777777777652 456888886543   3333222   2221 2357888899865311        


Q ss_pred             -cCCCceeEEEEcCCCC
Q 017476          262 -DVEGKLSGVVSNPPYI  277 (371)
Q Consensus       262 -~~~~~fDlIvsNPPYi  277 (371)
                       ...+++|++|.|.-+.
T Consensus        82 ~~~~g~ld~lv~nag~~   98 (257)
T PRK08594         82 KEEVGVIHGVAHCIAFA   98 (257)
T ss_pred             HHhCCCccEEEECcccC
Confidence             1136899999997654

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=88.37  E-value=1.3  Score=37.87  Aligned_cols=56  Identities=18%  Similarity=0.188  Sum_probs=34.8

Q ss_pred             EECCccc--HHHHHHH-HHhCCCcEEEEEeCCHHHHHHHHHH--HHHcCCCCcEEEEEcCc
Q 017476          201 DLGTGSG--AIAIGIA-RVLGSKGSIIAVDLNPLAAAVAAFN--AQRYGLQDIIEIRQGSW  256 (371)
Q Consensus       201 DlG~GsG--~~al~la-~~~~~~~~V~gvDis~~al~~A~~n--~~~~gl~~~v~~~~gD~  256 (371)
                      |+|++.|  .....+. +...+..+|+++|.++..++..++|  +..+...+.++++....
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~   61 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV   61 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence            8999999  6555554 2345788999999999999999999  66664433456655443

; PDB: 2PY6_A.

>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein

Probab=88.35  E-value=8.3  Score=36.63  Aligned_cols=139  Identities=17%  Similarity=0.153  Sum_probs=69.5

Q ss_pred             CCCCCeEEEECCccc---HH-HHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCcee
Q 017476          193 GLRDGFWVDLGTGSG---AI-AIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLS  268 (371)
Q Consensus       193 ~~~~~~VLDlG~GsG---~~-al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fD  268 (371)
                      .....+|+-+|+|+-   +- ...|.+.++.++.++-.|+.+-.             .+--..+.+|......  +.+||
T Consensus        59 VP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~v-------------SDa~~~~~~Dc~t~~~--~~k~D  123 (299)
T PF06460_consen   59 VPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYV-------------SDADQSIVGDCRTYMP--PDKFD  123 (299)
T ss_dssp             --TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B--------------SSSEEEES-GGGEEE--SS-EE
T ss_pred             eccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhc-------------cccCCceeccccccCC--CCccc
Confidence            345679999999974   23 33444555456778888887632             2334677888765433  37999


Q ss_pred             EEEEcCCCCCCCCcccchhhhcccCccccccCCC--CcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccc
Q 017476          269 GVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGV--DGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDS  346 (371)
Q Consensus       269 lIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~--dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~  346 (371)
                      +|||+-                 |+++..-..|+  +...+...++.-+...|+-||.+++-+-...-..++-+++.   
T Consensus       124 lIiSDm-----------------Yd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~Sw~~~Lyel~~---  183 (299)
T PF06460_consen  124 LIISDM-----------------YDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHSWNAQLYELMG---  183 (299)
T ss_dssp             EEEE---------------------TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS--HHHHHHHT---
T ss_pred             EEEEec-----------------ccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeecccccHHHHHHHh---
Confidence            999951                 22222222222  11223334556667899999999998854444566777765   


Q ss_pred             cCCceeEEEEec---CCCCceEEEE
Q 017476          347 ACSFCNVSIVSD---FAGIQRFVTG  368 (371)
Q Consensus       347 ~~gf~~v~~~~D---l~g~~R~~~a  368 (371)
                        .|...+.+.-   -+--+-|+++
T Consensus       184 --~F~~wt~FcT~VNtSSSEaFLig  206 (299)
T PF06460_consen  184 --YFSWWTCFCTAVNTSSSEAFLIG  206 (299)
T ss_dssp             --TEEEEEEEEEGGGTTSS-EEEEE
T ss_pred             --hcccEEEEecccCccccceeEEe
Confidence              3665555432   3334445544

This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=88.05  E-value=1.6  Score=43.43  Aligned_cols=41  Identities=20%  Similarity=0.095  Sum_probs=34.5

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~  238 (371)
                      -..++|+|.|-|.++..++-.+  +..|+|||-|....+.|++
T Consensus       154 i~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  154 IDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             CCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHHH
Confidence            4589999999999999998764  6799999999877666654

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=87.95  E-value=5.6  Score=37.00  Aligned_cols=80  Identities=15%  Similarity=0.030  Sum_probs=50.0

Q ss_pred             CCCeEEEECCccc-HHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc---------ccC
Q 017476          195 RDGFWVDLGTGSG-AIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL---------KDV  263 (371)
Q Consensus       195 ~~~~VLDlG~GsG-~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l---------~~~  263 (371)
                      .++++|=.|.++| .++.++++.+. .+.+|+.++.+.+..+.+++-.+..+   .+.++..|+.+.-         ...
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~~   85 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD---APIFLPLDVREPGQLEAVFARIAEE   85 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc---cceEEecCcCCHHHHHHHHHHHHHH
Confidence            4678999998873 77777776642 35689888988655433333222222   2457778875431         111


Q ss_pred             CCceeEEEEcCCCC
Q 017476          264 EGKLSGVVSNPPYI  277 (371)
Q Consensus       264 ~~~fDlIvsNPPYi  277 (371)
                      .++.|++|.|.-+.
T Consensus        86 ~g~ld~lv~nAg~~   99 (258)
T PRK07533         86 WGRLDFLLHSIAFA   99 (258)
T ss_pred             cCCCCEEEEcCccC
Confidence            26799999997543

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=87.72  E-value=5.2  Score=38.68  Aligned_cols=87  Identities=16%  Similarity=0.204  Sum_probs=63.8

Q ss_pred             CCCCCCeEEEECCccc---HHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc--------
Q 017476          192 DGLRDGFWVDLGTGSG---AIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL--------  260 (371)
Q Consensus       192 ~~~~~~~VLDlG~GsG---~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l--------  260 (371)
                      ....++.||=-|.|+|   .+++.+|++   +++++..|++.+..+...+.++..|   +++.+..|..+.-        
T Consensus        34 k~v~g~~vLITGgg~GlGr~ialefa~r---g~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~  107 (300)
T KOG1201|consen   34 KSVSGEIVLITGGGSGLGRLIALEFAKR---GAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKK  107 (300)
T ss_pred             hhccCCEEEEeCCCchHHHHHHHHHHHh---CCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHH
Confidence            3446778999999988   367777775   4689999999999988888888776   5899999986531        


Q ss_pred             -ccCCCceeEEEEcCCCCCCCCccc
Q 017476          261 -KDVEGKLSGVVSNPPYIPSDDISG  284 (371)
Q Consensus       261 -~~~~~~fDlIvsNPPYi~~~~~~~  284 (371)
                       ...-|..|++|.|-=-.+...+-.
T Consensus       108 Vk~e~G~V~ILVNNAGI~~~~~ll~  132 (300)
T KOG1201|consen  108 VKKEVGDVDILVNNAGIVTGKKLLD  132 (300)
T ss_pred             HHHhcCCceEEEeccccccCCCccC
Confidence             122478999999965554444333

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=87.26  E-value=7.7  Score=35.89  Aligned_cols=78  Identities=17%  Similarity=0.126  Sum_probs=49.6

Q ss_pred             CCCeEEEECCcc-cHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cC
Q 017476          195 RDGFWVDLGTGS-GAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DV  263 (371)
Q Consensus       195 ~~~~VLDlG~Gs-G~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~  263 (371)
                      .++++|-.|.++ +.++.++++.+ ..+.+|+.++.+....+.+++.    . ..++.+++.|+.+.-.         ..
T Consensus         6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~----~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~   80 (252)
T PRK06079          6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKL----V-DEEDLLVECDVASDESIERAFATIKER   80 (252)
T ss_pred             CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhh----c-cCceeEEeCCCCCHHHHHHHHHHHHHH
Confidence            456888888774 56777777665 2467899888875433322221    1 1247888999865311         11


Q ss_pred             CCceeEEEEcCCCC
Q 017476          264 EGKLSGVVSNPPYI  277 (371)
Q Consensus       264 ~~~fDlIvsNPPYi  277 (371)
                      .+++|++|.|.-+.
T Consensus        81 ~g~iD~lv~nAg~~   94 (252)
T PRK06079         81 VGKIDGIVHAIAYA   94 (252)
T ss_pred             hCCCCEEEEccccc
Confidence            26799999997654

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=87.00  E-value=1.8  Score=35.00  Aligned_cols=61  Identities=25%  Similarity=0.293  Sum_probs=42.2

Q ss_pred             CcccHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc--ccC-CCceeEEEE
Q 017476          204 TGSGAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL--KDV-EGKLSGVVS  272 (371)
Q Consensus       204 ~GsG~~al~la~~~~~~~-~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l--~~~-~~~fDlIvs  272 (371)
                      ||.|.++..+++.+.... +|+.+|.+++.++.++..    +    +.++.||..+..  ... -.+.|.|++
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~----~~~i~gd~~~~~~l~~a~i~~a~~vv~   68 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----G----VEVIYGDATDPEVLERAGIEKADAVVI   68 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T----SEEEES-TTSHHHHHHTTGGCESEEEE
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----c----cccccccchhhhHHhhcCccccCEEEE
Confidence            677888888888765455 899999999997776542    2    679999987642  111 246787776

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK09242 tropinone reductase; Provisional

Probab=86.92  E-value=9.4  Score=35.14  Aligned_cols=82  Identities=17%  Similarity=-0.026  Sum_probs=53.9

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc---------ccCC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL---------KDVE  264 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l---------~~~~  264 (371)
                      .++++|=.|+ +|.++..+++.+. .+.+|+.++.+.+.++....++....-..++.++.+|+.+.-         ....
T Consensus         8 ~~k~~lItGa-~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   86 (257)
T PRK09242          8 DGQTALITGA-SKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW   86 (257)
T ss_pred             CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            3567777776 4455555555432 367899999998887776666654422245888999986531         1113


Q ss_pred             CceeEEEEcCCCC
Q 017476          265 GKLSGVVSNPPYI  277 (371)
Q Consensus       265 ~~fDlIvsNPPYi  277 (371)
                      +++|.+|.|.-+.
T Consensus        87 g~id~li~~ag~~   99 (257)
T PRK09242         87 DGLHILVNNAGGN   99 (257)
T ss_pred             CCCCEEEECCCCC
Confidence            5799999987653

>PRK05867 short chain dehydrogenase; Provisional

Probab=86.82  E-value=5.8  Score=36.49  Aligned_cols=81  Identities=12%  Similarity=-0.044  Sum_probs=53.8

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE  264 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~  264 (371)
                      .++++|=.|++ |.++..+++.+ ..+.+|+.++.+.+.++...+.+...+  .++.++..|+.+.-.         ...
T Consensus         8 ~~k~vlVtGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (253)
T PRK05867          8 HGKRALITGAS-TGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAEL   84 (253)
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            35678888865 45555555543 235789999999888777666665544  357888898865311         112


Q ss_pred             CceeEEEEcCCCCC
Q 017476          265 GKLSGVVSNPPYIP  278 (371)
Q Consensus       265 ~~fDlIvsNPPYi~  278 (371)
                      ++.|++|.|.-+..
T Consensus        85 g~id~lv~~ag~~~   98 (253)
T PRK05867         85 GGIDIAVCNAGIIT   98 (253)
T ss_pred             CCCCEEEECCCCCC
Confidence            57999999976543

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=86.24  E-value=3.5  Score=39.37  Aligned_cols=43  Identities=26%  Similarity=0.302  Sum_probs=33.2

Q ss_pred             CCCCeEEEECCc-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476          194 LRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       194 ~~~~~VLDlG~G-sG~~al~la~~~~~~~~V~gvDis~~al~~A~~  238 (371)
                      ..+.+||..|+| .|..++.+|+..  +.+|++++.+++..+.+++
T Consensus       164 ~~~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~  207 (338)
T cd08254         164 KPGETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKE  207 (338)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH
Confidence            345688888876 477888888874  5789999999988777654

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=86.14  E-value=0.074  Score=43.67  Aligned_cols=27  Identities=26%  Similarity=0.426  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHhcccccCcEEEEEECC
Q 017476          305 LDYLLHLCNGTASMLKPGGFFAFETNG  331 (371)
Q Consensus       305 l~~~~~il~~a~~~LkpgG~lvle~~~  331 (371)
                      -+-++.+++.+.+.|+|||.+++|..+
T Consensus        20 D~Gl~~~f~~~~~~L~pGG~lilEpQ~   46 (110)
T PF06859_consen   20 DEGLKRFFRRIYSLLRPGGILILEPQP   46 (110)
T ss_dssp             HHHHHHHHHHHHHHEEEEEEEEEE---
T ss_pred             CHHHHHHHHHHHHhhCCCCEEEEeCCC
Confidence            344567889999999999999999863

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>PRK07063 short chain dehydrogenase; Provisional

Probab=85.84  E-value=11  Score=34.75  Aligned_cols=81  Identities=19%  Similarity=0.118  Sum_probs=53.9

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE  264 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~  264 (371)
                      .++++|-.|++ |.++..+++.+ ..+.+|+.++.+++.++...+.+...+...++.++..|+.+.-.         ...
T Consensus         6 ~~k~vlVtGas-~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   84 (260)
T PRK07063          6 AGKVALVTGAA-QGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF   84 (260)
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            45678877764 55666666544 24678999999998877766666543233458899999865311         112


Q ss_pred             CceeEEEEcCCC
Q 017476          265 GKLSGVVSNPPY  276 (371)
Q Consensus       265 ~~fDlIvsNPPY  276 (371)
                      +.+|.+|.|.-.
T Consensus        85 g~id~li~~ag~   96 (260)
T PRK07063         85 GPLDVLVNNAGI   96 (260)
T ss_pred             CCCcEEEECCCc
Confidence            579999998654

>PRK06940 short chain dehydrogenase; Provisional

Probab=85.57  E-value=4.8  Score=37.90  Aligned_cols=75  Identities=21%  Similarity=0.256  Sum_probs=51.2

Q ss_pred             eEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc--------cCCCceeE
Q 017476          198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK--------DVEGKLSG  269 (371)
Q Consensus       198 ~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~--------~~~~~fDl  269 (371)
                      .++=-|+  |.++..+++.+..+.+|+.+|.+++.++.+.+.+...+  .++.++..|+.+.-.        ...+++|+
T Consensus         4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~   79 (275)
T PRK06940          4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVTG   79 (275)
T ss_pred             EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCCE
Confidence            4554453  57999999888667899999999877665555554433  247888888765311        01257999


Q ss_pred             EEEcCCC
Q 017476          270 VVSNPPY  276 (371)
Q Consensus       270 IvsNPPY  276 (371)
                      +|.|.-.
T Consensus        80 li~nAG~   86 (275)
T PRK06940         80 LVHTAGV   86 (275)
T ss_pred             EEECCCc
Confidence            9998754

>PRK07326 short chain dehydrogenase; Provisional

Probab=84.88  E-value=9.2  Score=34.55  Aligned_cols=75  Identities=16%  Similarity=0.050  Sum_probs=50.7

Q ss_pred             CCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc------c---CCC
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK------D---VEG  265 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~------~---~~~  265 (371)
                      +++++=.| |+|.++..+++.+. .+.+|++++.++..+....+.+...   .++.++.+|+.+...      .   ..+
T Consensus         6 ~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (237)
T PRK07326          6 GKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAFG   81 (237)
T ss_pred             CCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            45788888 57778777777552 3568999999987766555554332   358899999865311      0   114


Q ss_pred             ceeEEEEcC
Q 017476          266 KLSGVVSNP  274 (371)
Q Consensus       266 ~fDlIvsNP  274 (371)
                      .+|.||.|.
T Consensus        82 ~~d~vi~~a   90 (237)
T PRK07326         82 GLDVLIANA   90 (237)
T ss_pred             CCCEEEECC
Confidence            689999875

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=84.88  E-value=13  Score=35.10  Aligned_cols=79  Identities=18%  Similarity=0.066  Sum_probs=47.8

Q ss_pred             CCeEEEECCcc-cHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476          196 DGFWVDLGTGS-GAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE  264 (371)
Q Consensus       196 ~~~VLDlG~Gs-G~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~  264 (371)
                      ++.+|=.|+++ +.++.++++.+. .+++|+.++.+....+.+++.....+  .. .+++.|+.+.-.         ...
T Consensus         5 ~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~--~~-~~~~~Dv~d~~~v~~~~~~i~~~~   81 (274)
T PRK08415          5 GKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELG--SD-YVYELDVSKPEHFKSLAESLKKDL   81 (274)
T ss_pred             CcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHc
Confidence            56788888763 566766666542 35789988988643233333223333  22 567788765311         113


Q ss_pred             CceeEEEEcCCCC
Q 017476          265 GKLSGVVSNPPYI  277 (371)
Q Consensus       265 ~~fDlIvsNPPYi  277 (371)
                      +++|++|.|.-+.
T Consensus        82 g~iDilVnnAG~~   94 (274)
T PRK08415         82 GKIDFIVHSVAFA   94 (274)
T ss_pred             CCCCEEEECCccC
Confidence            6899999997654

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=84.78  E-value=1.2  Score=42.66  Aligned_cols=55  Identities=13%  Similarity=0.070  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHH
Q 017476          176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAA  233 (371)
Q Consensus       176 te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al  233 (371)
                      +..+++.+.+.+ ...-...+++|||+|||+|.-.+.+...  ....++..|.|.+.+
T Consensus        98 S~dl~~~l~~e~-~~~~~~~~k~vLELgCg~~Lp~i~~~~~--~~~~~~fqD~na~vl  152 (282)
T KOG2920|consen   98 SVDLLPYLKEEI-GAQMSFSGKRVLELGCGAALPGIFAFVK--GAVSVHFQDFNAEVL  152 (282)
T ss_pred             HHHHHHHHHHHh-hhheEecCceeEecCCcccccchhhhhh--ccceeeeEecchhhe
Confidence            444555554332 1111235789999999999999998885  347899999999887

>PRK06914 short chain dehydrogenase; Provisional

Probab=83.73  E-value=18  Score=33.73  Aligned_cols=80  Identities=20%  Similarity=0.143  Sum_probs=52.1

Q ss_pred             CeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc--------cCCCce
Q 017476          197 GFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK--------DVEGKL  267 (371)
Q Consensus       197 ~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~--------~~~~~f  267 (371)
                      +++|=.| |+|.++..+++.+ ..+.+|++++.+++.++.........+...++.++.+|+.+.-.        ...++.
T Consensus         4 k~~lItG-asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~i   82 (280)
T PRK06914          4 KIAIVTG-ASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGRI   82 (280)
T ss_pred             CEEEEEC-CCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCCe
Confidence            4567666 4556666665543 24678999999887776655555444444568999999866321        012568


Q ss_pred             eEEEEcCCCC
Q 017476          268 SGVVSNPPYI  277 (371)
Q Consensus       268 DlIvsNPPYi  277 (371)
                      |.||.|.-+.
T Consensus        83 d~vv~~ag~~   92 (280)
T PRK06914         83 DLLVNNAGYA   92 (280)
T ss_pred             eEEEECCccc
Confidence            9999987554

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=83.04  E-value=10  Score=34.86  Aligned_cols=81  Identities=17%  Similarity=0.032  Sum_probs=55.7

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE  264 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~  264 (371)
                      .++++|=.| |+|.++..+++.+. .+.+|+.++.++..++.....+...+  .++.++..|+.+.-.         ...
T Consensus         9 ~~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   85 (255)
T PRK07523          9 TGRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG--LSAHALAFDVTDHDAVRAAIDAFEAEI   85 (255)
T ss_pred             CCCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--ceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            456888777 57777888777652 46789999999887766666655444  347888899865311         112


Q ss_pred             CceeEEEEcCCCCC
Q 017476          265 GKLSGVVSNPPYIP  278 (371)
Q Consensus       265 ~~fDlIvsNPPYi~  278 (371)
                      +..|.+|.|.-+..
T Consensus        86 ~~~d~li~~ag~~~   99 (255)
T PRK07523         86 GPIDILVNNAGMQF   99 (255)
T ss_pred             CCCCEEEECCCCCC
Confidence            56899999976543

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=82.73  E-value=17  Score=36.49  Aligned_cols=141  Identities=12%  Similarity=0.101  Sum_probs=72.1

Q ss_pred             cccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH---cCCC-----CcEEEEEc-CcccccccCCCceeEEEEcCC
Q 017476          205 GSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR---YGLQ-----DIIEIRQG-SWFGKLKDVEGKLSGVVSNPP  275 (371)
Q Consensus       205 GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~---~gl~-----~~v~~~~g-D~~~~l~~~~~~fDlIvsNPP  275 (371)
                      |.|.+++.+|..+..+.+|+++|++++.++.+++....   .+++     .+.++... |..+.    ....|+|+..-|
T Consensus         7 GlGyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~----~~~ad~vii~Vp   82 (388)
T PRK15057          7 GTGYVGLSNGLLIAQNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEA----YRDADYVIIATP   82 (388)
T ss_pred             CCCHHHHHHHHHHHhCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhh----hcCCCEEEEeCC
Confidence            55555555554443356899999999998877652110   0000     01222211 11111    134677776433


Q ss_pred             CCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC-CcCcHHHHHHHHhccccCCc----
Q 017476          276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN-GEKQCKFLKNYLENDSACSF----  350 (371)
Q Consensus       276 Yi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~-~~~q~~~v~~~l~~~~~~gf----  350 (371)
                      -.....                  .+.--+..++..++.+.+ +++|..++++.. .....+.+.+.+.+. .-.|    
T Consensus        83 t~~~~k------------------~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~-~v~~~PE~  142 (388)
T PRK15057         83 TDYDPK------------------TNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTE-NIIFSPEF  142 (388)
T ss_pred             CCCccC------------------CCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcC-cEEECccc
Confidence            210000                  001124566677777766 677777666542 334666777666531 0112    


Q ss_pred             -eeEEEEecCCCCceEEEEE
Q 017476          351 -CNVSIVSDFAGIQRFVTGF  369 (371)
Q Consensus       351 -~~v~~~~Dl~g~~R~~~a~  369 (371)
                       ..-+...|+...+|+++|-
T Consensus       143 l~~G~a~~d~~~p~rvv~G~  162 (388)
T PRK15057        143 LREGKALYDNLHPSRIVIGE  162 (388)
T ss_pred             ccCCcccccccCCCEEEEEc
Confidence             1224567777778998873

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=82.73  E-value=15  Score=34.17  Aligned_cols=80  Identities=9%  Similarity=-0.014  Sum_probs=46.4

Q ss_pred             CCCeEEEECCccc-HHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cC
Q 017476          195 RDGFWVDLGTGSG-AIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DV  263 (371)
Q Consensus       195 ~~~~VLDlG~GsG-~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~  263 (371)
                      .++.+|=.|+++| .++.++++.+. .+.+|+.++.++...+.+++.....+  . ..+++.|+.+.-.         ..
T Consensus         7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g--~-~~~~~~Dv~~~~~v~~~~~~~~~~   83 (260)
T PRK06603          7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIG--C-NFVSELDVTNPKSISNLFDDIKEK   83 (260)
T ss_pred             CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcC--C-ceEEEccCCCHHHHHHHHHHHHHH
Confidence            3567888888764 45555555442 36788888877543333333333323  1 2356788765311         11


Q ss_pred             CCceeEEEEcCCCC
Q 017476          264 EGKLSGVVSNPPYI  277 (371)
Q Consensus       264 ~~~fDlIvsNPPYi  277 (371)
                      .+++|++|.|.-+.
T Consensus        84 ~g~iDilVnnag~~   97 (260)
T PRK06603         84 WGSFDFLLHGMAFA   97 (260)
T ss_pred             cCCccEEEEccccC
Confidence            36799999997653

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=82.60  E-value=20  Score=35.95  Aligned_cols=109  Identities=15%  Similarity=0.134  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCc-EEEEEc
Q 017476          176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDI-IEIRQG  254 (371)
Q Consensus       176 te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~-v~~~~g  254 (371)
                      .|++++.+.+..       ...+|+=++=.-|+++..++.. ++. .+  .| |--+-...++|++++|++.. ++++  
T Consensus        32 de~ll~~~~~~~-------~~~~~~i~nd~fGal~~~l~~~-~~~-~~--~d-s~~~~~~~~~n~~~n~~~~~~~~~~--   97 (378)
T PRK15001         32 DEYLLQQLDDTE-------IRGPVLILNDAFGALSCALAEH-KPY-SI--GD-SYISELATRENLRLNGIDESSVKFL--   97 (378)
T ss_pred             HHHHHHHHhhcc-------cCCCEEEEcCchhHHHHHHHhC-CCC-ee--eh-HHHHHHHHHHHHHHcCCCcccceee--
Confidence            466666665532       1137999999999999999963 231 11  22 22334456789999998643 4444  


Q ss_pred             CcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476          255 SWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE  328 (371)
Q Consensus       255 D~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle  328 (371)
                      +..+.++   +.+|+|+.   |+|..                        ++.....+..+..+|.+|+.+++-
T Consensus        98 ~~~~~~~---~~~d~vl~---~~PK~------------------------~~~l~~~l~~l~~~l~~~~~ii~g  141 (378)
T PRK15001         98 DSTADYP---QQPGVVLI---KVPKT------------------------LALLEQQLRALRKVVTSDTRIIAG  141 (378)
T ss_pred             ccccccc---CCCCEEEE---EeCCC------------------------HHHHHHHHHHHHhhCCCCCEEEEE
Confidence            3333333   56999987   22211                        345567888889999999997643

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=82.50  E-value=7.6  Score=37.69  Aligned_cols=44  Identities=16%  Similarity=0.055  Sum_probs=32.5

Q ss_pred             CCCCCeEEEECCc-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476          193 GLRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       193 ~~~~~~VLDlG~G-sG~~al~la~~~~~~~~V~gvDis~~al~~A~~  238 (371)
                      ..++.+||=.|+| .|.+++.+|+..  +++|++++.+++.++.|++
T Consensus       163 ~~~g~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~  207 (329)
T TIGR02822       163 LPPGGRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLALA  207 (329)
T ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH
Confidence            3456789888865 455667777764  5689999999988777665

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=82.09  E-value=13  Score=34.74  Aligned_cols=80  Identities=15%  Similarity=0.005  Sum_probs=47.7

Q ss_pred             CCCeEEEECCccc-HHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc---------ccC
Q 017476          195 RDGFWVDLGTGSG-AIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL---------KDV  263 (371)
Q Consensus       195 ~~~~VLDlG~GsG-~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l---------~~~  263 (371)
                      .++++|=.|.++| .++.++++.+. .+.+|+.++.+....+.+.+ +....  +.+.++..|+.+.-         ...
T Consensus         5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~-~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~   81 (262)
T PRK07984          5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEE-FAAQL--GSDIVLPCDVAEDASIDAMFAELGKV   81 (262)
T ss_pred             CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHH-HHhcc--CCceEeecCCCCHHHHHHHHHHHHhh
Confidence            3567888888763 66666666542 35688888877432222222 22211  23567888886531         111


Q ss_pred             CCceeEEEEcCCCC
Q 017476          264 EGKLSGVVSNPPYI  277 (371)
Q Consensus       264 ~~~fDlIvsNPPYi  277 (371)
                      .+++|++|.|.-+.
T Consensus        82 ~g~iD~linnAg~~   95 (262)
T PRK07984         82 WPKFDGFVHSIGFA   95 (262)
T ss_pred             cCCCCEEEECCccC
Confidence            36799999998654

>PRK06949 short chain dehydrogenase; Provisional

Probab=82.07  E-value=21  Score=32.61  Aligned_cols=79  Identities=11%  Similarity=0.061  Sum_probs=53.7

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE  264 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~  264 (371)
                      .+++|+=.| |+|.++..+++.+. .+.+|++++.+++.++.....+...+  .++.++.+|+.+.-.         ...
T Consensus         8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (258)
T PRK06949          8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEG--GAAHVVSLDVTDYQSIKAAVAHAETEA   84 (258)
T ss_pred             CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence            456788887 66777777776652 35689999999988776665554433  348889998864311         112


Q ss_pred             CceeEEEEcCCC
Q 017476          265 GKLSGVVSNPPY  276 (371)
Q Consensus       265 ~~fDlIvsNPPY  276 (371)
                      +++|+||.|.-.
T Consensus        85 ~~~d~li~~ag~   96 (258)
T PRK06949         85 GTIDILVNNSGV   96 (258)
T ss_pred             CCCCEEEECCCC
Confidence            468999998754

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=81.85  E-value=4  Score=37.28  Aligned_cols=43  Identities=21%  Similarity=0.232  Sum_probs=33.5

Q ss_pred             CCCCeEEEECCcc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476          194 LRDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       194 ~~~~~VLDlG~Gs-G~~al~la~~~~~~~~V~gvDis~~al~~A~~  238 (371)
                      .++.+||..|+|+ |..++.+++..  +.+|++++.+++..+.+++
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~  176 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAA--GARVIVTDRSDEKLELAKE  176 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH
Confidence            4567999999986 66777777764  5799999999887776643

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK07576 short chain dehydrogenase; Provisional

Probab=81.81  E-value=21  Score=33.17  Aligned_cols=78  Identities=18%  Similarity=0.130  Sum_probs=51.0

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE  264 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~  264 (371)
                      +++++|-.| |+|.++..+++.+. .+.+|++++.+++.++...+.+...+  .++.++..|+.+.-.         ...
T Consensus         8 ~~k~ilItG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~~   84 (264)
T PRK07576          8 AGKNVVVVG-GTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADEF   84 (264)
T ss_pred             CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence            356788777 56777777666542 45689999999877665554444433  347888888864210         012


Q ss_pred             CceeEEEEcCC
Q 017476          265 GKLSGVVSNPP  275 (371)
Q Consensus       265 ~~fDlIvsNPP  275 (371)
                      +.+|++|.|.-
T Consensus        85 ~~iD~vi~~ag   95 (264)
T PRK07576         85 GPIDVLVSGAA   95 (264)
T ss_pred             CCCCEEEECCC
Confidence            46899999864

>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B

Probab=81.72  E-value=2.9  Score=38.37  Aligned_cols=117  Identities=22%  Similarity=0.214  Sum_probs=65.2

Q ss_pred             CCc-ccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC-CceeEE
Q 017476          203 GTG-SGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE-GKLSGV  270 (371)
Q Consensus       203 G~G-sG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~-~~fDlI  270 (371)
                      |+| ++.++..+|+.+. .+++|+.++.+.+.++.+.+.+.... .  .+++..|..+.-.         ... +++|++
T Consensus         1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~-~--~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~l   77 (241)
T PF13561_consen    1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEY-G--AEVIQCDLSDEESVEALFDEAVERFGGRIDIL   77 (241)
T ss_dssp             STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHT-T--SEEEESCTTSHHHHHHHHHHHHHHHCSSESEE
T ss_pred             CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHc-C--CceEeecCcchHHHHHHHHHHHhhcCCCeEEE
Confidence            455 4556666665532 47899999999998755555544332 1  2368998865311         112 789999


Q ss_pred             EEcCCCCCC----CCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          271 VSNPPYIPS----DDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       271 vsNPPYi~~----~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      |.|..+.+.    ..+..++.+.  ++-.  +.   ..+-....+++.+.++++++|.+++..
T Consensus        78 V~~a~~~~~~~~~~~~~~~~~~~--~~~~--~~---~~~~~~~~~~~~~~~~~~~~gsii~is  133 (241)
T PF13561_consen   78 VNNAGISPPSNVEKPLLDLSEED--WDKT--FD---INVFSPFLLAQAALPLMKKGGSIINIS  133 (241)
T ss_dssp             EEEEESCTGGGTSSSGGGSHHHH--HHHH--HH---HHTHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             EecccccccccCCCChHhCCHHH--HHHH--HH---HHHHHHHHHHHHHHHHHhhCCCccccc
Confidence            998765543    2222222111  1000  00   001122355666667888999888764

...

>PRK07062 short chain dehydrogenase; Provisional

Probab=81.51  E-value=22  Score=32.84  Aligned_cols=82  Identities=12%  Similarity=0.011  Sum_probs=53.1

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE  264 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~  264 (371)
                      .++++|=.|++ |.++..+++.+ ..+.+|+.++.+++.++.+.+.+....-..++.++..|+.+...         ...
T Consensus         7 ~~k~~lItGas-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   85 (265)
T PRK07062          7 EGRVAVVTGGS-SGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF   85 (265)
T ss_pred             CCCEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence            35678877754 55555666554 24678999999998777666655443222357888888865311         113


Q ss_pred             CceeEEEEcCCCC
Q 017476          265 GKLSGVVSNPPYI  277 (371)
Q Consensus       265 ~~fDlIvsNPPYi  277 (371)
                      +++|++|.|.-+.
T Consensus        86 g~id~li~~Ag~~   98 (265)
T PRK07062         86 GGVDMLVNNAGQG   98 (265)
T ss_pred             CCCCEEEECCCCC
Confidence            5789999986543

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=81.46  E-value=19  Score=33.87  Aligned_cols=80  Identities=18%  Similarity=0.060  Sum_probs=48.4

Q ss_pred             CCCeEEEECCc-ccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc---------ccC
Q 017476          195 RDGFWVDLGTG-SGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL---------KDV  263 (371)
Q Consensus       195 ~~~~VLDlG~G-sG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l---------~~~  263 (371)
                      .++++|=.|.+ ++.++.++++.+. .+.+|+.++.+....+.+++..+..+   ....++.|+.+.-         ...
T Consensus         9 ~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~---~~~~~~~Dl~~~~~v~~~~~~~~~~   85 (272)
T PRK08159          9 AGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELG---AFVAGHCDVTDEASIDAVFETLEKK   85 (272)
T ss_pred             cCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcC---CceEEecCCCCHHHHHHHHHHHHHh
Confidence            35678888886 4677777777652 46688877665433333333333333   2456788875431         111


Q ss_pred             CCceeEEEEcCCCC
Q 017476          264 EGKLSGVVSNPPYI  277 (371)
Q Consensus       264 ~~~fDlIvsNPPYi  277 (371)
                      .++.|++|.|.-+.
T Consensus        86 ~g~iD~lv~nAG~~   99 (272)
T PRK08159         86 WGKLDFVVHAIGFS   99 (272)
T ss_pred             cCCCcEEEECCccc
Confidence            36799999997654

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=81.40  E-value=6.3  Score=37.39  Aligned_cols=47  Identities=23%  Similarity=0.274  Sum_probs=40.4

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY  243 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~  243 (371)
                      ..+..|||..+|+|..+++..+.   +-..+|+|++++.++.+.+.+...
T Consensus       221 ~~~diVlDpf~GsGtt~~aa~~~---~r~~ig~e~~~~y~~~~~~r~~~~  267 (302)
T COG0863         221 FPGDIVLDPFAGSGTTGIAAKNL---GRRFIGIEINPEYVEVALKRLQEG  267 (302)
T ss_pred             CCCCEEeecCCCCChHHHHHHHc---CCceEEEecCHHHHHHHHHHHHhh
Confidence            35679999999999999888774   568999999999999999887654

>PRK05876 short chain dehydrogenase; Provisional

Probab=81.31  E-value=19  Score=33.79  Aligned_cols=81  Identities=12%  Similarity=0.021  Sum_probs=52.7

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE  264 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~  264 (371)
                      .++++|=.|++ |.++..+++.+. .+.+|+.+|.++..++.+.+.+...+  .++.++..|+.+.-.         ...
T Consensus         5 ~~k~vlVTGas-~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~   81 (275)
T PRK05876          5 PGRGAVITGGA-SGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEG--FDVHGVMCDVRHREEVTHLADEAFRLL   81 (275)
T ss_pred             CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            35577766654 556666665542 35789999999887776655554443  248888999865311         112


Q ss_pred             CceeEEEEcCCCCC
Q 017476          265 GKLSGVVSNPPYIP  278 (371)
Q Consensus       265 ~~fDlIvsNPPYi~  278 (371)
                      ++.|++|.|.-+..
T Consensus        82 g~id~li~nAg~~~   95 (275)
T PRK05876         82 GHVDVVFSNAGIVV   95 (275)
T ss_pred             CCCCEEEECCCcCC
Confidence            56899999976543

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=80.77  E-value=15  Score=33.72  Aligned_cols=81  Identities=15%  Similarity=0.052  Sum_probs=51.2

Q ss_pred             CeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCCCc
Q 017476          197 GFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEGK  266 (371)
Q Consensus       197 ~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~~~  266 (371)
                      +++|=.| |+|.++..+++.+. .+.+|+.+|.+...++.....+....-..++.++..|+.+...         ...++
T Consensus         3 k~ilItG-~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~   81 (259)
T PRK12384          3 QVAVVIG-GGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGR   81 (259)
T ss_pred             CEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            4677777 56777777766542 4578999999987665544443322111348889999865311         11257


Q ss_pred             eeEEEEcCCCCC
Q 017476          267 LSGVVSNPPYIP  278 (371)
Q Consensus       267 fDlIvsNPPYi~  278 (371)
                      .|.||.|.-+..
T Consensus        82 id~vv~~ag~~~   93 (259)
T PRK12384         82 VDLLVYNAGIAK   93 (259)
T ss_pred             CCEEEECCCcCC
Confidence            899999875543

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=80.73  E-value=6.3  Score=38.82  Aligned_cols=43  Identities=28%  Similarity=0.156  Sum_probs=31.0

Q ss_pred             CCCCeEEEECCc-ccHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHH
Q 017476          194 LRDGFWVDLGTG-SGAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       194 ~~~~~VLDlG~G-sG~~al~la~~~~~~~-~V~gvDis~~al~~A~~  238 (371)
                      .++.+||=.|+| .|.+++.+|+..  +. +|+++|.+++-++.|++
T Consensus       190 ~~g~~VlV~G~G~vG~~a~~lak~~--G~~~Vi~~~~~~~r~~~a~~  234 (371)
T cd08281         190 RPGQSVAVVGLGGVGLSALLGAVAA--GASQVVAVDLNEDKLALARE  234 (371)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc--CCCcEEEEcCCHHHHHHHHH
Confidence            345677778865 355666677764  45 69999999998888764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PRK08251 short chain dehydrogenase; Provisional

Probab=80.48  E-value=18  Score=32.93  Aligned_cols=80  Identities=13%  Similarity=-0.022  Sum_probs=53.5

Q ss_pred             CeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCCCc
Q 017476          197 GFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEGK  266 (371)
Q Consensus       197 ~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~~~  266 (371)
                      +++|=.| |+|.++..+++.+. .+.+|+.++.+++.++.....+....-..++.++.+|+.+.-.         ...+.
T Consensus         3 k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   81 (248)
T PRK08251          3 QKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGG   81 (248)
T ss_pred             CEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4677666 57778877777652 3468999999988877666555443223358899999875411         11256


Q ss_pred             eeEEEEcCCCC
Q 017476          267 LSGVVSNPPYI  277 (371)
Q Consensus       267 fDlIvsNPPYi  277 (371)
                      .|.+|.|.-+.
T Consensus        82 id~vi~~ag~~   92 (248)
T PRK08251         82 LDRVIVNAGIG   92 (248)
T ss_pred             CCEEEECCCcC
Confidence            89999986543

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=80.46  E-value=10  Score=35.18  Aligned_cols=78  Identities=14%  Similarity=0.091  Sum_probs=49.7

Q ss_pred             CCCeEEEECCc-ccHHHHHHHHHhC-CCcEEEEEeCCH--HHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------
Q 017476          195 RDGFWVDLGTG-SGAIAIGIARVLG-SKGSIIAVDLNP--LAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------  261 (371)
Q Consensus       195 ~~~~VLDlG~G-sG~~al~la~~~~-~~~~V~gvDis~--~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------  261 (371)
                      .+++++=.|.| ++.++.++++.+. .+.+|+.++.+.  +.++...+.   .+  .++.++..|+.+.-.         
T Consensus         6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~---~~--~~~~~~~~Dv~~~~~i~~~~~~~~   80 (256)
T PRK07889          6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKR---LP--EPAPVLELDVTNEEHLASLADRVR   80 (256)
T ss_pred             cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHh---cC--CCCcEEeCCCCCHHHHHHHHHHHH
Confidence            45689988985 6778888877652 357899888764  333332222   22  246788888865311         


Q ss_pred             cCCCceeEEEEcCCCC
Q 017476          262 DVEGKLSGVVSNPPYI  277 (371)
Q Consensus       262 ~~~~~fDlIvsNPPYi  277 (371)
                      ...+++|++|.|.-+.
T Consensus        81 ~~~g~iD~li~nAG~~   96 (256)
T PRK07889         81 EHVDGLDGVVHSIGFA   96 (256)
T ss_pred             HHcCCCcEEEEccccc
Confidence            1136899999997543

>cd08230 glucose_DH Glucose dehydrogenase

Probab=80.37  E-value=6.4  Score=38.45  Aligned_cols=42  Identities=17%  Similarity=0.108  Sum_probs=30.4

Q ss_pred             CCCeEEEECCc-ccHHHHHHHHHhCCCcEEEEEeC---CHHHHHHHHH
Q 017476          195 RDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDL---NPLAAAVAAF  238 (371)
Q Consensus       195 ~~~~VLDlG~G-sG~~al~la~~~~~~~~V~gvDi---s~~al~~A~~  238 (371)
                      ++.+||=.|+| .|.+++.+|+..  +.+|++++.   +++.++.+++
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~--G~~vi~~~~~~~~~~~~~~~~~  217 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLR--GFEVYVLNRRDPPDPKADIVEE  217 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHH
Confidence            46788888886 366777788874  568999987   6777666653

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=80.33  E-value=7.8  Score=35.43  Aligned_cols=80  Identities=15%  Similarity=0.129  Sum_probs=52.7

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccc-----------ccc
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK-----------LKD  262 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~-----------l~~  262 (371)
                      +++++|=.| |+|.++..+++.+. .+.+|++++.++..++...+.+...+. .++.++..|+...           +..
T Consensus        11 ~~k~vlItG-~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~   88 (247)
T PRK08945         11 KDRIILVTG-AGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGG-PQPAIIPLDLLTATPQNYQQLADTIEE   88 (247)
T ss_pred             CCCEEEEeC-CCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCC-CCceEEEecccCCCHHHHHHHHHHHHH
Confidence            466788888 57777777776542 356999999998877666655555442 2477777777421           111


Q ss_pred             CCCceeEEEEcCCC
Q 017476          263 VEGKLSGVVSNPPY  276 (371)
Q Consensus       263 ~~~~fDlIvsNPPY  276 (371)
                      ..+++|.||.|--.
T Consensus        89 ~~~~id~vi~~Ag~  102 (247)
T PRK08945         89 QFGRLDGVLHNAGL  102 (247)
T ss_pred             HhCCCCEEEECCcc
Confidence            12578999998543

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=80.30  E-value=21  Score=32.16  Aligned_cols=76  Identities=13%  Similarity=0.083  Sum_probs=49.8

Q ss_pred             CCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCCC
Q 017476          196 DGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG  265 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~~  265 (371)
                      +++|+=.|++ |.++..+++.+ ..+.+|++++.+++.+..+.+.....+   ++.++.+|+.+.-.         ...+
T Consensus         5 ~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dl~~~~~~~~~~~~~~~~~~   80 (238)
T PRK05786          5 GKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYG---NIHYVVGDVSSTESARNVIEKAAKVLN   80 (238)
T ss_pred             CcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            5688888875 66666666554 246799999999887765544443322   48889999875321         0124


Q ss_pred             ceeEEEEcCC
Q 017476          266 KLSGVVSNPP  275 (371)
Q Consensus       266 ~fDlIvsNPP  275 (371)
                      .+|.++.|..
T Consensus        81 ~id~ii~~ag   90 (238)
T PRK05786         81 AIDGLVVTVG   90 (238)
T ss_pred             CCCEEEEcCC
Confidence            5798888764

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=80.21  E-value=25  Score=32.14  Aligned_cols=80  Identities=18%  Similarity=0.133  Sum_probs=54.3

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE  264 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~  264 (371)
                      .+++++=.| |+|.++..+++.+ ..+.+|+.++.+++.++.....++..+  .++.++.+|+.+.-.         ...
T Consensus        10 ~~k~ilItG-as~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   86 (256)
T PRK06124         10 AGQVALVTG-SARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDAEH   86 (256)
T ss_pred             CCCEEEEEC-CCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhc
Confidence            466788777 5666677766654 246799999999887766665555544  348899999865311         112


Q ss_pred             CceeEEEEcCCCC
Q 017476          265 GKLSGVVSNPPYI  277 (371)
Q Consensus       265 ~~fDlIvsNPPYi  277 (371)
                      +++|.+|.|.-+.
T Consensus        87 ~~id~vi~~ag~~   99 (256)
T PRK06124         87 GRLDILVNNVGAR   99 (256)
T ss_pred             CCCCEEEECCCCC
Confidence            5789999987654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	371
1vq1_A	294	Crystal Structure Of N5-Glutamine Methyltransferase		1e-04
1sg9_A	282	Crystal Structure Of Thermotoga Maritima Protein He		1e-04
1nv8_A	284	N5-Glutamine Methyltransferase, Hemk Length = 284		1e-04

>pdb|1VQ1|A Chain A, Crystal Structure Of N5-Glutamine Methyltransferase, Hemk(Ec 2.1.1.-) (Tm0488) From Thermotoga Maritima At 2.80 A Resolution Length = 294

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 9/140 (6%)
Query: 143 IEKRK---PFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFW 199
           +EKR    P  Y++G + +  L   VEEGVF+PRPETE +V+L  +++ +   G++    
Sbjct: 82  VEKRASGYPLHYILGEKEFXGLSFLVEEGVFVPRPETEELVELALELIRKY--GIKT--V 137
Query: 200 VDLGTXXXXXXXXXXRVLGSKGSIIXXXXXXXXXXXXXXXXQRYGLQDIIEIRQGSWFGK 259
            D+GT          +   S   +                 +R+G+ D   +R+G +   
Sbjct: 138 ADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP 195
Query: 260 LKDVEGKLSGVVSNPPYIPS 279
            K+    +  ++SNPPY+ S
Sbjct: 196 FKEKFASIEXILSNPPYVKS 215

>pdb|1SG9|A Chain A, Crystal Structure Of Thermotoga Maritima Protein Hemk, An N5-Glutamine Methyltransferase Length = 282

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 9/140 (6%)
Query: 143 IEKRK---PFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFW 199
           +EKR    P  Y++G + +  L   VEEGVF+PRPETE +V+L  +++ +   G++    
Sbjct: 70  VEKRASGYPLHYILGEKEFMGLSFLVEEGVFVPRPETEELVELALELIRKY--GIKT--V 125
Query: 200 VDLGTXXXXXXXXXXRVLGSKGSIIXXXXXXXXXXXXXXXXQRYGLQDIIEIRQGSWFGK 259
            D+GT          +   S   +                 +R+G+ D   +R+G +   
Sbjct: 126 ADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP 183
Query: 260 LKDVEGKLSGVVSNPPYIPS 279
            K+    +  ++SNPPY+ S
Sbjct: 184 FKEKFASIEMILSNPPYVKS 203

>pdb|1NV8|A Chain A, N5-Glutamine Methyltransferase, Hemk Length = 284

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 9/140 (6%)
Query: 143 IEKRK---PFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFW 199
           +EKR    P  Y++G + +  L   VEEGVF+PRPETE +V+L  +++ +   G++    
Sbjct: 72  VEKRASGYPLHYILGEKEFMGLSFLVEEGVFVPRPETEELVELALELIRKY--GIKT--V 127
Query: 200 VDLGTXXXXXXXXXXRVLGSKGSIIXXXXXXXXXXXXXXXXQRYGLQDIIEIRQGSWFGK 259
            D+GT          +   S   +                 +R+G+ D   +R+G +   
Sbjct: 128 ADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP 185
Query: 260 LKDVEGKLSGVVSNPPYIPS 279
            K+    +  ++SNPPY+ S
Sbjct: 186 FKEKFASIEMILSNPPYVKS 205

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	371
2b3t_A	276	Protein methyltransferase HEMK; translation termin	1e-64
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	9e-61
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	3e-60
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	1e-53
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	1e-23
3lpm_A	259	Putative methyltransferase; structural genomics, p	6e-19
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	4e-17
2h00_A	254	Methyltransferase 10 domain containing protein; st	5e-16
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	1e-13
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	1e-13
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	6e-13
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	2e-11
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	2e-11
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	4e-11
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	7e-10
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	2e-09
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	2e-09
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	2e-09
3ocj_A	305	Putative exported protein; structural genomics, PS	7e-09
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	1e-08
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	4e-08
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	4e-08
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	6e-08
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	9e-08
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	1e-07
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	1e-07
3f4k_A	257	Putative methyltransferase; structural genomics, P	4e-07
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	7e-07
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	1e-06
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	1e-06
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	2e-06
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	2e-06
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	4e-06
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	5e-06
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	5e-06
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	6e-06
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	7e-06
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	7e-06
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	7e-06
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	8e-06
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	9e-06
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	1e-05
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	1e-05
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	1e-05
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	1e-05
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	1e-05
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	1e-05
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	1e-05
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	2e-05
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	3e-05
2b25_A	336	Hypothetical protein; structural genomics, methyl	3e-05
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	5e-05
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	5e-05
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	5e-05
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	6e-05
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	8e-05
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	1e-04
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	1e-04
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	1e-04
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	1e-04
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	2e-04
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	2e-04
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	6e-04
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	6e-04
1xxl_A	239	YCGJ protein; structural genomics, protein structu	7e-04
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	7e-04

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* Length = 276

 Score =  205 bits (525), Expect = 1e-64
 Identities = 70/228 (30%), Positives = 104/228 (45%), Gaps = 14/228 (6%)

Query: 141 QRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWV 200
            R    +P  +L G   +  L L V     IPRP+TE +V+     L       R    +
Sbjct: 60  TRRRDGEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQALARL--PEQPCR---IL 114

Query: 201 DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL 260
           DLGTG+GAIA+ +A        IIAVD  P A ++A  NAQ   +++I  I Q  WF  L
Sbjct: 115 DLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAIKNI-HILQSDWFSAL 172

Query: 261 KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLK 320
                + + +VSNPPYI   D    Q +V + EP  AL     G+  ++H+   + + L 
Sbjct: 173 AG--QQFAMIVSNPPYIDEQDPHLQQGDV-RFEPLTALVAADSGMADIVHIIEQSRNALV 229

Query: 321 PGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTG 368
            GGF   E  G +Q + ++          + +V    D+   +R   G
Sbjct: 230 SGGFLLLEH-GWQQGEAVRQAFI---LAGYHDVETCRDYGDNERVTLG 273

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* Length = 284

 Score =  196 bits (500), Expect = 9e-61
 Identities = 72/232 (31%), Positives = 109/232 (46%), Gaps = 23/232 (9%)

Query: 141 QRIEKRKPFQYLVG-CEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFW 199
           ++     P  Y++G  E    L   VEEGVF+PRPETE +V+L  +++ R          
Sbjct: 73  EKRASGYPLHYILGEKEFM-GLSFLVEEGVFVPRPETEELVELALELI-RKYGIKT---V 127

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK 259
            D+GTGSGAI + +A+   +     A D++  A  +A  NA+R+G+ D   +R+G +   
Sbjct: 128 ADIGTGSGAIGVSVAKFSDAIV--FATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP 185

Query: 260 LKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASML 319
            K+    +  ++SNPPY+ S     L  +V   EP  AL GG DGLD+            
Sbjct: 186 FKEKFASIEMILSNPPYVKSSA--HLPKDV-LFEPPEALFGGEDGLDFYREFF---GRYD 239

Query: 320 KPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFRQ 371
             G     E  GE Q + LK  +         +   + D AG  RF+   R+
Sbjct: 240 TSGKIVLMEI-GEDQVEELKKIVS--------DTVFLKDSAGKYRFLLLNRR 282

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} Length = 215

 Score =  192 bits (491), Expect = 3e-60
 Identities = 71/213 (33%), Positives = 96/213 (45%), Gaps = 12/213 (5%)

Query: 163 LSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGS 222
             V     IPRP+TE++V+     L R   G R    +D+GTGSG IA+ IA       S
Sbjct: 1   FEVGPDCLIPRPDTEVLVEEAIRFLKRMPSGTR---VIDVGTGSGCIAVSIALAC-PGVS 56

Query: 223 IIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV---EGKLSGVVSNPPYIPS 279
           + AVDL+  A AVA  NA+R+G    ++         L +          +VSNPPYIP+
Sbjct: 57  VTAVDLSMDALAVARRNAERFGAV--VDWAAADGIEWLIERAERGRPWHAIVSNPPYIPT 114

Query: 280 DDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPG-GFFAFETNGEKQCKFL 338
            +I  L+  V  +EPRLALDGG DGL +   +      +L  G      E  G  Q   +
Sbjct: 115 GEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEV-GHNQADEV 173

Query: 339 KNYLENDSACSFCNVSIVSDFAGIQRFVTGFRQ 371
                         V  V D  GI R +   R+
Sbjct: 174 ARLFA-PWRERGFRVRKVKDLRGIDRVIAVTRE 205

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} Length = 230

 Score =  175 bits (447), Expect = 1e-53
 Identities = 37/223 (16%), Positives = 66/223 (29%), Gaps = 28/223 (12%)

Query: 140 KQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFW 199
             R + R  +   +    +  L +       +  P +     +     +R  +       
Sbjct: 10  SNR-QARILYNKAIAKALF-GLDIEYHPKGLVTTPISRY---IFLKTFLRGGEVA----- 59

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK 259
           +++GTG  A+   +A        + A +++      A  N +R      +    G     
Sbjct: 60  LEIGTGHTAMMALMAEKF-FNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKG 118

Query: 260 LKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASML 319
           +   EG    + S PPY                  R A+ GG  G ++ + L       L
Sbjct: 119 VV--EGTFDVIFSAPPYYDKP-------LGRVLTEREAIGGGKYGEEFSVKLLEEAFDHL 169

Query: 320 KPGGFFAFET-NGEKQCKFLKNYLENDSACSFCNVSIVSDFAG 361
            PGG  A    + EK    +K                V D   
Sbjct: 170 NPGGKVALYLPDKEKLLNVIK-------ERGIKLGYSVKDIKF 205

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} Length = 170

 Score = 95.2 bits (237), Expect = 1e-23
 Identities = 27/176 (15%), Positives = 55/176 (31%), Gaps = 42/176 (23%)

Query: 169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDL 228
            + P  +T  ++D +        +GL     +DLGT +G I   + +    + ++++ DL
Sbjct: 3   WYEPGEDTYTLMDALER------EGLEMKIVLDLGTSTGVITEQLRK----RNTVVSTDL 52

Query: 229 NPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVE 288
           N  A                    +      +      +  VV NPPY+P          
Sbjct: 53  NIRALESHRGGNL----------VRADLLCSINQ--ESVDVVVFNPPYVPD--------- 91

Query: 289 VGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE---TNGEKQCKFLKNY 341
                    + GG  G + +    +     +  G  +         ++    L+  
Sbjct: 92  ----TDDPIIGGGYLGREVIDRFVDA----VTVGMLYLLVIEANRPKEVLARLEER 139

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259

 Score = 84.5 bits (209), Expect = 6e-19
 Identities = 38/184 (20%), Positives = 65/184 (35%), Gaps = 16/184 (8%)

Query: 157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARV 216
              +L +     VF    +  L+              +R G  +DL +G+G I + ++  
Sbjct: 18  LAENLRIIQSPSVFSFSIDAVLLAKFSYL-------PIRKGKIIDLCSGNGIIPLLLSTR 70

Query: 217 LGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV-EGKLSGVVSNPP 275
             +K  I+ V++    A +A  +     L+D IEI +         + + +   V  NPP
Sbjct: 71  --TKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPP 128

Query: 276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQC 335
           Y  + D S           R  +         L       AS+LK GG   F    E+  
Sbjct: 129 YFATPDTSLKNTNEHFRIARHEVMCT------LEDTIRVAASLLKQGGKANFVHRPERLL 182

Query: 336 KFLK 339
             + 
Sbjct: 183 DIID 186

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194

 Score = 78.1 bits (193), Expect = 4e-17
 Identities = 45/219 (20%), Positives = 76/219 (34%), Gaps = 43/219 (19%)

Query: 144 EKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLG 203
              K  + ++     + L    + GVF         VD  + +LV +    +D   +DLG
Sbjct: 9   SDVKIVEDILRG---KKLKFKTDSGVFSYG-----KVDKGTKILVENVVVDKDDDILDLG 60

Query: 204 TGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDI-IEIRQGSWFGKLKD 262
            G G I I +A       S    D+N  A  +A  N +   L +  I +     +  +KD
Sbjct: 61  CGYGVIGIALAD---EVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKD 117

Query: 263 VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPG 322
              K + +++NPP                            G + L  +      +LK  
Sbjct: 118 --RKYNKIITNPPIR-------------------------AGKEVLHRIIEEGKELLKDN 150

Query: 323 GFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAG 361
           G        ++  K L  Y+++     F NV  V+   G
Sbjct: 151 GEIWVVIQTKQGAKSLAKYMKD----VFGNVETVTIKGG 185

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 Length = 254

 Score = 75.9 bits (186), Expect = 5e-16
 Identities = 32/193 (16%), Positives = 65/193 (33%), Gaps = 22/193 (11%)

Query: 156 EHWRDLVLSVEEGVFIPRPETE-LMVDLVSDVLVRDNDGLRDGFWV-DLGTGSGAIAIGI 213
           E +  L + +     IP        +  V D++   +          D+GTG+  I   +
Sbjct: 25  EDF-GLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLL 83

Query: 214 ARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV-----EGKLS 268
              L +    +A +++ +    A  N ++  L D+I++ +      L D      E    
Sbjct: 84  GATL-NGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYD 142

Query: 269 GVVSNPPYIPS-DDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF 327
             + NPP+  +  +  G+     +  P  +++ G                ++  GG   F
Sbjct: 143 FCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGIT------------EIMAEGGELEF 190

Query: 328 ETNGEKQCKFLKN 340
                     LK 
Sbjct: 191 VKRIIHDSLQLKK 203

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343

 Score = 70.5 bits (173), Expect = 1e-13
 Identities = 43/189 (22%), Positives = 72/189 (38%), Gaps = 34/189 (17%)

Query: 137 GLWKQRIEKRKPF--QYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGL 194
           GL+  R+EK+  F  +   G      L +    GVF         +D+ S +L+      
Sbjct: 141 GLYFGRLEKQPVFDAEKFWGEYSVDGLTVKTLPGVFSRD-----GLDVGSQLLLSTLTPH 195

Query: 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254
             G  +D+G G+G +++  AR    K  +   D++  A   +       G++   E+   
Sbjct: 196 TKGKVLDVGCGAGVLSVAFAR-HSPKIRLTLCDVSAPAVEASRATLAANGVEG--EVFAS 252

Query: 255 SWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNG 314
           + F    +V+G+   ++SNPP+               H      DG    LD    L  G
Sbjct: 253 NVF---SEVKGRFDMIISNPPF---------------H------DGMQTSLDAAQTLIRG 288

Query: 315 TASMLKPGG 323
               L  GG
Sbjct: 289 AVRHLNSGG 297

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260

 Score = 69.5 bits (170), Expect = 1e-13
 Identities = 24/149 (16%), Positives = 48/149 (32%), Gaps = 20/149 (13%)

Query: 200 VDLGTGSGAIAIGIA-RVLGSKGSIIAVDLNPLAAAVAAFNA---QRYGLQDIIEIRQGS 255
            DLG G+GA  + +A R+  ++  +   + +   A  A  +            IE+ +  
Sbjct: 41  ADLGAGAGAAGMAVAARLEKAE--VTLYERSQEMAEFARRSLELPDNAAFSARIEVLEAD 98

Query: 256 WF-GKLKDVEGKLSG-----VVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLL 309
                   VE  L       V+ NPPY  + D               A        +   
Sbjct: 99  VTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRR-----TPDALKAEAHAMTEGLFE--- 150

Query: 310 HLCNGTASMLKPGGFFAFETNGEKQCKFL 338
                 ++++  GG  +  +  +   + +
Sbjct: 151 DWIRTASAIMVSGGQLSLISRPQSVAEII 179

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 66.1 bits (161), Expect = 6e-13
 Identities = 25/127 (19%), Positives = 42/127 (33%), Gaps = 17/127 (13%)

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK 259
           VD   G+G     +A ++G  G +   D+   A A          L D + + +      
Sbjct: 27  VDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNM 86

Query: 260 LKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASML 319
            K ++  +  V+ N  Y+PS D          H      +  +  L   + L       L
Sbjct: 87  DKYIDCPVKAVMFNLGYLPSGD----------HSISTRPETTIQALSKAMEL-------L 129

Query: 320 KPGGFFA 326
             GG   
Sbjct: 130 VTGGIIT 136

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230

 Score = 62.2 bits (151), Expect = 2e-11
 Identities = 17/99 (17%), Positives = 38/99 (38%), Gaps = 1/99 (1%)

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK 259
           +D+G+    + I + + +G     IA ++       A  N   +GL   I++R  +    
Sbjct: 26  LDVGSDHAYLPIFLLQ-MGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSA 84

Query: 260 LKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLAL 298
            ++ +   +  +         DI    ++  +H   L L
Sbjct: 85  FEEADNIDTITICGMGGRLIADILNNDIDKLQHVKTLVL 123

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244

 Score = 62.2 bits (151), Expect = 2e-11
 Identities = 11/74 (14%), Positives = 30/74 (40%), Gaps = 1/74 (1%)

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK 259
            D+G+    +     +   +    IA ++       A    +  GL + I++R+G+    
Sbjct: 26  ADIGSDHAYLPCFAVK-NQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAV 84

Query: 260 LKDVEGKLSGVVSN 273
           ++  +   + V++ 
Sbjct: 85  IEKKDAIDTIVIAG 98

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375

 Score = 63.0 bits (153), Expect = 4e-11
 Identities = 29/187 (15%), Positives = 61/187 (32%), Gaps = 34/187 (18%)

Query: 139 WKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGF 198
             Q  +  +   +        D  +     VF  R       D+ +   ++      +G 
Sbjct: 174 EPQLADAPQTVSW---KLEGTDWTIHNHANVF-SRTGL----DIGARFFMQHLPENLEGE 225

Query: 199 WVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDI--IEIRQGSW 256
            VDLG G+G I + +      +  ++ VD +P+A A +  N +    + +   E    + 
Sbjct: 226 IVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNA 284

Query: 257 FGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTA 316
              ++    + + V+ NPP+               H+            +    + +   
Sbjct: 285 LSGVEP--FRFNAVLCNPPF---------------HQ------QHALTDNVAWEMFHHAR 321

Query: 317 SMLKPGG 323
             LK  G
Sbjct: 322 RCLKING 328

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225

 Score = 57.6 bits (139), Expect = 7e-10
 Identities = 13/65 (20%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK 259
           +D+G+    + I +    G   S IA ++       A  N + +GL++ I++R  +    
Sbjct: 20  LDVGSDHAYLPIELVE-RGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAA 78

Query: 260 LKDVE 264
            ++ +
Sbjct: 79  FEETD 83

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 56.0 bits (135), Expect = 2e-09
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIR 252
           G+  G  +D+G+G GA++I +A+      SI A+D +     +A  N     L D I+I 
Sbjct: 41  GITAGTCIDIGSGPGALSIALAKQSD--FSIRALDFSKHMNEIALKNIADANLNDRIQIV 98

Query: 253 QG 254
           QG
Sbjct: 99  QG 100

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* Length = 373

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 2/77 (2%)

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK 259
           +D   GSG I I +A      G II ++        A  NA   G+ D I+  QG    +
Sbjct: 222 LDPMCGSGTILIELAL-RRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGD-ATQ 279

Query: 260 LKDVEGKLSGVVSNPPY 276
           L      +   +SN PY
Sbjct: 280 LSQYVDSVDFAISNLPY 296

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} Length = 354

 Score = 57.1 bits (138), Expect = 2e-09
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 2/77 (2%)

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK 259
           +D  TGSG IA+  A  LG    + A DL+     +A   A   GL  I  +R       
Sbjct: 208 LDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRAD--ARH 265

Query: 260 LKDVEGKLSGVVSNPPY 276
           L     ++  +++NPP+
Sbjct: 266 LPRFFPEVDRILANPPH 282

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 55.5 bits (133), Expect = 7e-09
 Identities = 16/105 (15%), Positives = 32/105 (30%), Gaps = 1/105 (0%)

Query: 151 YLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWV-DLGTGSGAI 209
            LV  +     +  +E   +   P      +            LR G  V  +  G  + 
Sbjct: 73  RLVTHQPGSGALAPLERVFYERLPAVLATRERHGHFRRALQRHLRPGCVVASVPCGWMSE 132

Query: 210 AIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254
            + +         ++ +D +P A   A   A  + L   I + + 
Sbjct: 133 LLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQ 177

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381

 Score = 55.4 bits (133), Expect = 1e-08
 Identities = 35/168 (20%), Positives = 63/168 (37%), Gaps = 32/168 (19%)

Query: 159 RDLVLSVEEGVFIPR---PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIAR 215
            +       GVF      P + L+++ + + L    +G+R    +DLG G GA+ + +AR
Sbjct: 196 AEYTFHHLPGVFSAGKVDPASLLLLEALQERL--GPEGVRGRQVLDLGAGYGALTLPLAR 253

Query: 216 VLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP 275
                  ++ V+ +  +        +   L+   +         L + E +   +V+NPP
Sbjct: 254 ---MGAEVVGVEDDLASVLSLQKGLEANALK--AQALHSDVDEALTE-EARFDIIVTNPP 307

Query: 276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGG 323
           +               H       GG   LD      N  A+ L+PGG
Sbjct: 308 F---------------H------VGGAVILDVAQAFVNVAAARLRPGG 334

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Length = 241

 Score = 52.7 bits (126), Expect = 4e-08
 Identities = 33/148 (22%), Positives = 53/148 (35%), Gaps = 12/148 (8%)

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK 259
           VD   G G   I  A    +   +IA+D++P+  A+A  NA+ YG+ D IE   G +   
Sbjct: 83  VDAFCGVGGNTIQFAL---TGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLL 139

Query: 260 LKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASML 319
                 K   V  +PP+   D  +    ++           G +       + N     L
Sbjct: 140 AS--FLKADVVFLSPPWGGPDYATAETFDIRTMMS----PDGFEIFRLSKKITNNIVYFL 193

Query: 320 KPG---GFFAFETNGEKQCKFLKNYLEN 344
                    A       Q +  +N+L N
Sbjct: 194 PRNADIDQVASLAGPGGQVEIEQNFLNN 221

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Length = 200

 Score = 51.9 bits (124), Expect = 4e-08
 Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 18/107 (16%)

Query: 172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPL 231
                  ++++ +D  +     +      D GTG+G +A G + +LG++ S+ A D++P 
Sbjct: 34  ASTAAYFLIEIYNDGNIGGRSVI------DAGTGNGILACG-SYLLGAE-SVTAFDIDPD 85

Query: 232 AAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIP 278
           A   A  N                    + ++ GK    + NPP+  
Sbjct: 86  AIETAKRNCGGVNFM----------VADVSEISGKYDTWIMNPPFGS 122

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} Length = 205

 Score = 51.4 bits (124), Expect = 6e-08
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 6/74 (8%)

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK 259
            D+GTGSG +AI  A  LG+K S++A D++  +   A  NA   G+ D I +++ S    
Sbjct: 65  ADVGTGSGILAIA-AHKLGAK-SVLATDISDESMTAAEENAALNGIYD-IALQKTS---L 118

Query: 260 LKDVEGKLSGVVSN 273
           L DV+GK   +V+N
Sbjct: 119 LADVDGKFDLIVAN 132

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192

 Score = 50.8 bits (122), Expect = 9e-08
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 6/64 (9%)

Query: 193 GLRDG--FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIE 250
                     D+G G+G + + +A        + A+D NP A +    N QR+GL D + 
Sbjct: 30  EPGKNDVAV-DVGCGTGGVTLELAG---RVRRVYAIDRNPEAISTTEMNLQRHGLGDNVT 85

Query: 251 IRQG 254
           + +G
Sbjct: 86  LMEG 89

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 18/63 (28%), Positives = 36/63 (57%), Gaps = 2/63 (3%)

Query: 193 GLRDGFWV-DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEI 251
           GL++G  V D+GTG+G     +++++G KG + A+D+       A     + GL++ +E+
Sbjct: 34  GLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKN-VEV 92

Query: 252 RQG 254
            + 
Sbjct: 93  LKS 95

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 201 DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGS 255
           D+G G+G   + +A  +   G +  +D       +   NA++ GLQ+ +    GS
Sbjct: 52  DIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGS 104

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 49.9 bits (119), Expect = 4e-07
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 201 DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGS 255
           D+G G+G   + +A  +   G I  +DL P    +   NA +    D ++   GS
Sbjct: 52  DIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANCADRVKGITGS 104

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* Length = 421

 Score = 49.6 bits (118), Expect = 7e-07
 Identities = 32/165 (19%), Positives = 51/165 (30%), Gaps = 29/165 (17%)

Query: 169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDL 228
           V  P    + MV L         +  R G  ++     G          G+    + V++
Sbjct: 21  VETPPEVVDFMVSLA--------EAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEI 72

Query: 229 NPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVE 288
           +P A  +  +        D +    G  F    D+      ++ NPPY    + S   + 
Sbjct: 73  DPKALDLPPWAEGILA--DFLLWEPGEAF----DL------ILGNPPYGIVGEASKYPIH 120

Query: 289 VGKHEPRL------ALDGGVDGLDYLLHLCNGTASMLKPGGFFAF 327
           V K    L         G  +     L        +LKPGG   F
Sbjct: 121 VFKAVKDLYKKAFSTWKGKYNLYGAFLEKA---VRLLKPGGVLVF 162

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 193 GLRDGFWV-DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEI 251
               G  V + G G GA  + +A+       I ++D++P +   A  N ++ G+++ ++ 
Sbjct: 34  VYPPGAKVLEAGCGIGAQTVILAK-NNPDAEITSIDISPESLEKARENTEKNGIKN-VKF 91

Query: 252 RQGS 255
            Q +
Sbjct: 92  LQAN 95

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 48.4 bits (115), Expect = 1e-06
 Identities = 12/71 (16%), Positives = 21/71 (29%), Gaps = 3/71 (4%)

Query: 185 DVLVRDNDGLRDGFWV-DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY 243
             LV     +     + D G G G + + +  +L        +D      A A    +  
Sbjct: 11  SFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL 70

Query: 244 GLQDIIEIRQG 254
                 E  +G
Sbjct: 71  PYD--SEFLEG 79

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 24/136 (17%), Positives = 39/136 (28%), Gaps = 30/136 (22%)

Query: 193 GLRDGFWV-DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEI 251
            +R G  V D+G G G  A+ +A        +  + ++      A   A   GL + +  
Sbjct: 58  DVRSGDRVLDVGCGIGKPAVRLATARD--VRVTGISISRPQVNQANARATAAGLANRVTF 115

Query: 252 RQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHL 311
                   L   +     V +              +E   H P                 
Sbjct: 116 SYAD-AMDLPFEDASFDAVWA--------------LESLHHMPDRG------------RA 148

Query: 312 CNGTASMLKPGGFFAF 327
               A +L+PGG  A 
Sbjct: 149 LREMARVLRPGGTVAI 164

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Length = 183

 Score = 46.4 bits (111), Expect = 2e-06
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 7/65 (10%)

Query: 193 GLRDG--FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIE 250
            L        D+G GSG + + IA+       + A+D    A  V   N  ++ +++  +
Sbjct: 32  NLNKDDVVV-DVGCGSGGMTVEIAK---RCKFVYAIDYLDGAIEVTKQNLAKFNIKN-CQ 86

Query: 251 IRQGS 255
           I +G 
Sbjct: 87  IIKGR 91

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} Length = 237

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 10/55 (18%), Positives = 24/55 (43%)

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254
           +++G  +G   +  A  +   G I A+D +  A  +     ++ G++  I   + 
Sbjct: 75  IEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIES 129

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} Length = 210

 Score = 46.0 bits (110), Expect = 5e-06
 Identities = 13/55 (23%), Positives = 22/55 (40%)

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254
           V  G G G  +   AR +     ++ +D +      A       GL D +E++ G
Sbjct: 61  VVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVG 115

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297

 Score = 46.8 bits (111), Expect = 5e-06
 Identities = 27/130 (20%), Positives = 43/130 (33%), Gaps = 29/130 (22%)

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK 259
           +DLG G G  A  + R  G   SI  +++ P+          + GL D I ++ GS F +
Sbjct: 87  LDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGS-FLE 143

Query: 260 LKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASML 319
           +   +     + S               +   H P                +    A +L
Sbjct: 144 IPCEDNSYDFIWS--------------QDAFLHSPDKL------------KVFQECARVL 177

Query: 320 KPGGFFAFET 329
           KP G  A   
Sbjct: 178 KPRGVMAITD 187

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* Length = 254

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDII 249
           +DLGTGSG +AI  A  LG K   + VD++P+    A  NA+R G++   
Sbjct: 125 LDLGTGSGVLAIA-AEKLGGK--ALGVDIDPMVLPQAEANAKRNGVRPRF 171

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 Length = 344

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 32/193 (16%), Positives = 63/193 (32%), Gaps = 44/193 (22%)

Query: 172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKG----SIIAVD 227
           P     ++  L+ + +++    +     +D   G+  +   +   L  KG        VD
Sbjct: 111 PDSIGFIVAYLL-EKVIQKKKNVS---ILDPACGTANLLTTVINQLELKGDVDVHASGVD 166

Query: 228 LNPLAAAVAAFNAQRYGLQDI-IEIRQG----SWFGKLKDVEGKLSGVVSNPPY--IPSD 280
           ++ L  ++A   A    LQ   + +       +      DV      V+S+ P    P D
Sbjct: 167 VDDLLISLALVGAD---LQRQKMTLLHQDGLANLLVDPVDV------VISDLPVGYYPDD 217

Query: 281 DISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFA-------FETNGEK 333
           + +       K       +G        +          KPGG+         F T+   
Sbjct: 218 ENA-------KTFELCREEGHSFAHFLFIEQG---MRYTKPGGYLFFLVPDAMFGTSDFA 267

Query: 334 QC-KFL--KNYLE 343
           +  KF+    ++E
Sbjct: 268 KVDKFIKKNGHIE 280

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* Length = 247

 Score = 45.8 bits (109), Expect = 7e-06
 Identities = 12/55 (21%), Positives = 27/55 (49%)

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254
           +++G  +G   +  A  +   G I+A+D+N     +     ++ G+   I+ R+G
Sbjct: 84  MEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREG 138

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* Length = 223

 Score = 45.7 bits (109), Expect = 7e-06
 Identities = 18/55 (32%), Positives = 31/55 (56%)

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254
           +++GT  G   I +AR L S G ++ ++ +   A +A  N +R  L D +E+R G
Sbjct: 63  LEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTG 117

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Length = 277

 Score = 46.2 bits (109), Expect = 8e-06
 Identities = 22/98 (22%), Positives = 47/98 (47%), Gaps = 11/98 (11%)

Query: 160 DLVLSVEEGVFIPRP-ETELMVDLVSDVLVRDNDGLRDGFWV-DLGTGSGAIAIGIARVL 217
           D +++++    I  P ++  +  ++          +++G  + D G GSGA+   +AR +
Sbjct: 84  DEIMNMKRRTQIVYPKDSSFIAMML---------DVKEGDRIIDTGVGSGAMCAVLARAV 134

Query: 218 GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGS 255
           GS G + A +     A +A  N  ++GL + + I+   
Sbjct: 135 GSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRD 172

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} Length = 878

 Score = 46.8 bits (110), Expect = 9e-06
 Identities = 23/169 (13%), Positives = 45/169 (26%), Gaps = 14/169 (8%)

Query: 170 FIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG--SKGSIIAVD 227
                  +++  +   +L        D    D   GSG +   ++          I A D
Sbjct: 298 PTDIELGKVLSIISQHIL--GRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWAND 355

Query: 228 LNPLAAAVAAFNAQRYGLQ-----DIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDI 282
           +  L   + +        Q     +   I          +    +S VV NPPY+     
Sbjct: 356 IETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANVSVVVMNPPYVSGVTD 415

Query: 283 SG----LQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF 327
                    ++ +                 L L   T  +++ G   + 
Sbjct: 416 PAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVT-ELVQDGTVISA 463

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} Length = 239

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 14/55 (25%), Positives = 28/55 (50%)

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254
           +++GT +G  ++  A  L   G I+  D++     VA    +  GL++ I ++ G
Sbjct: 65  IEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLG 119

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} Length = 225

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 17/55 (30%), Positives = 30/55 (54%)

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254
           +D+GT +G  AI +   L   G++I  D++  + A+A    ++ GL D I +R  
Sbjct: 69  IDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLS 123

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 Length = 229

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 11/55 (20%), Positives = 27/55 (49%)

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254
           +DLGT +G  A+ +A  L + G ++  +++     +     ++   +  I++R  
Sbjct: 74  LDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLK 128

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... Length = 221

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 17/55 (30%), Positives = 29/55 (52%)

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254
           ++LG   G  A+ +AR+L     ++ +++NP  AA+        GLQD + I  G
Sbjct: 63  LELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNG 117

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275

 Score = 45.4 bits (107), Expect = 1e-05
 Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 7/69 (10%)

Query: 193 GLRDGFWV-DLGTGSGAIAIGIARVLGSKGSIIAVDLN------PLAAAVAAFNAQRYGL 245
            ++ G  + ++G G G ++  +A  +GS G +  +D+       PL    A  +     L
Sbjct: 40  QVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPL 99

Query: 246 QDIIEIRQG 254
            D + +   
Sbjct: 100 GDRLTVHFN 108

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} Length = 242

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 4/77 (5%)

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK 259
           ++LGT +G  A+ ++  L   G +I  D+N      A    +    +  I++R G     
Sbjct: 65  LELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDT 124

Query: 260 LKDVEGKLSGVVSNPPY 276
           L      L        +
Sbjct: 125 LH----SLLNEGGEHQF 137

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} Length = 232

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 19/55 (34%), Positives = 30/55 (54%)

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254
           +++G   G  A+ +A  L   G IIA D +P A A+A    Q+ G+ + I +R G
Sbjct: 77  LEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLG 131

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} Length = 248

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 16/55 (29%), Positives = 30/55 (54%)

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254
           +++GT  G   I +AR L + G ++ ++ +   A VA  N Q  G+   + +R+G
Sbjct: 68  LEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREG 122

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255

 Score = 44.2 bits (104), Expect = 3e-05
 Identities = 16/71 (22%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 193 GLRDGFWV-DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEI 251
           G+  G ++ + G GSGA+ + +A ++G +G +++ ++    A +A  N +  G  D + I
Sbjct: 90  GISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTI 149

Query: 252 RQGSWFGKLKD 262
           +    +  +++
Sbjct: 150 KLKDIYEGIEE 160

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 Length = 336

 Score = 44.4 bits (104), Expect = 3e-05
 Identities = 14/81 (17%), Positives = 39/81 (48%), Gaps = 1/81 (1%)

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK 259
           ++ G+GSG +++ +++ +GS+G +I+ ++      +A  N + +     +   +  W   
Sbjct: 110 LEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEE-WPDN 168

Query: 260 LKDVEGKLSGVVSNPPYIPSD 280
           +  +   +SG   +   +  D
Sbjct: 169 VDFIHKDISGATEDIKSLTFD 189

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} Length = 384

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 218 GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPY 276
             +  I   D +     +A  NA+  GL+D+++++Q       K        ++SNPPY
Sbjct: 254 DIQLDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMR-LQDFK-TNKINGVLISNPPY 310

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178

 Score = 42.5 bits (100), Expect = 5e-05
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 193 GLRDGFWV-DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEI 251
             +    + D+G GSG+IAI   R    + + +  +++         NA   G+ D I +
Sbjct: 22  APKPHETLWDIGGGSGSIAIEWLR-STPQTTAVCFEISEERRERILSNAINLGVSDRIAV 80

Query: 252 R 252
           +
Sbjct: 81  Q 81

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204

 Score = 42.9 bits (101), Expect = 5e-05
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254
           R     D+G GSG++++       + G  I ++           N   YGL   +   QG
Sbjct: 55  RGELLWDIGGGSGSVSVEWCL---AGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQG 111

Query: 255 S 255
           +
Sbjct: 112 T 112

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} Length = 385

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 223 IIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPY 276
           I   D++  +  +A  NA+  G+ + IE   G    + K  E +   +++NPPY
Sbjct: 260 IYGYDIDEESIDIARENAEIAGVDEYIEFNVGD-ATQFK-SEDEFGFIITNPPY 311

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} Length = 393

 Score = 43.4 bits (103), Expect = 8e-05
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 223 IIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSG-VVSNPPY 276
           II  D++     +A  NA   GL D+I  RQ       +  +    G VV+NPPY
Sbjct: 266 IIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQ-VADFQTEDEY--GVVVANPPY 317

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} Length = 233

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254
           +++GT  G  AI +A+ L  + +I++++ +      A  + +  GL+  IE+  G
Sbjct: 59  LEIGTAIGYSAIRMAQALP-EATIVSIERDERRYEEAHKHVKALGLESRIELLFG 112

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 9/83 (10%)

Query: 171 IPRPETELMVDLVSDVLVR--------DNDGLRDGFWV-DLGTGSGAIAIGIARVLGSKG 221
           +P    +++ D+  +VL +          DG  +G  V DLG G+G      ++++G  G
Sbjct: 50  VPESHRKILADIADEVLEKFYGCGSTLPADGSLEGATVLDLGCGTGRDVYLASKLVGEHG 109

Query: 222 SIIAVDLNPLAAAVAAFNAQRYG 244
            +I VD+      VA    + + 
Sbjct: 110 KVIGVDMLDNQLEVARKYVEYHA 132

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 193 GLRDGFWV-DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEI 251
            ++ G  + DLG+GSG +    AR  G  G    +D++ L  A A   A+  G+ + +  
Sbjct: 33  RMKPGTRILDLGSGSGEMLCTWARDHGITG--TGIDMSSLFTAQAKRRAEELGVSERVHF 90

Query: 252 RQGS 255
               
Sbjct: 91  IHND 94

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} Length = 221

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 6/56 (10%), Positives = 16/56 (28%), Gaps = 1/56 (1%)

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQD-IIEIRQG 254
           + +   +G + + I   L    ++  +D        A    +  G     +     
Sbjct: 61  IAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLS 116

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* Length = 703

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 223 IIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSG-VVSNPPY 276
               D +      A  NA+  G+ ++I             +     G V+SNPPY
Sbjct: 259 FYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPY 313

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* Length = 336

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 33/172 (19%), Positives = 53/172 (30%), Gaps = 40/172 (23%)

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK 259
           VD+  G G  +I           I A+D+NP A  +   N +   L+  I          
Sbjct: 200 VDMFAGVGPFSIACKN----AKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVR-- 253

Query: 260 LKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASML 319
             +V+ K + V+ N P                             +D  L +       +
Sbjct: 254 --EVDVKGNRVIMNLPK-----------------------FAHKFIDKALDI-------V 281

Query: 320 KPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFA-GIQRFVTGFR 370
           + GG   + T G+   K +K   E    C      IV  +A         F+
Sbjct: 282 EEGGVIHYYTIGKDFDKAIKL-FEKKCDCEVLEKRIVKSYAPREYILALDFK 332

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} Length = 258

 Score = 40.0 bits (93), Expect = 6e-04
 Identities = 15/55 (27%), Positives = 28/55 (50%)

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254
           ++ GTGSG + + +AR +G KG + + +  P   A A  N + +   + +    G
Sbjct: 101 LEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLG 155

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 18/129 (13%), Positives = 31/129 (24%), Gaps = 30/129 (23%)

Query: 201 DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL 260
           D+G+G G   + I    G+      +D+      +A    +R    + I           
Sbjct: 61  DIGSGLGGGCMYINEKYGAH--THGIDICSNIVNMA---NERVSGNNKIIFEAND-ILTK 114

Query: 261 KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLK 320
           +  E     + S               +                L+    L       LK
Sbjct: 115 EFPENNFDLIYS--------------RDAILAL----------SLENKNKLFQKCYKWLK 150

Query: 321 PGGFFAFET 329
           P G      
Sbjct: 151 PTGTLLITD 159

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 39.8 bits (93), Expect = 7e-04
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 193 GLRDGFWV-DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEI 251
             R    V D+G G+G  A+  +  +      I VD       VA+  AQ  G+++ +  
Sbjct: 18  ECRAEHRVLDIGAGAGHTALAFSPYVQE---CIGVDATKEMVEVASSFAQEKGVEN-VRF 73

Query: 252 RQG 254
           +QG
Sbjct: 74  QQG 76

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} Length = 232

 Score = 39.5 bits (93), Expect = 7e-04
 Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254
           +++GT  G  ++  A  +     +  ++ N      A  N   Y  ++ + I +G
Sbjct: 76  LEIGTAIGYSSMQFAS-ISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEG 129

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	371
2b3t_A	276	Protein methyltransferase HEMK; translation termin	100.0
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	100.0
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.97
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.93
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.92
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.88
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.82
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.82
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.82
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.82
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.82
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.82
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.8
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.79
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.79
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.77
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.77
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.77
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.76
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.74
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.74
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.74
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.74
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.74
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.73
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.73
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.73
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.73
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.73
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.73
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.73
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.72
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.72
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.71
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.71
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.71
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.71
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.71
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.71
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.71
3ocj_A	305	Putative exported protein; structural genomics, PS	99.71
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.7
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.7
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.68
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.68
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.68
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.67
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.67
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.67
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.67
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.67
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.67
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.67
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.67
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.67
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.66
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.66
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.65
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.65
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.65
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.65
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.65
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.64
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.64
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.64
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.64
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.64
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.64
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.64
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.63
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.63
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.63
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.63
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.63
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.63
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.63
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.62
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.62
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.62
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.62
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.61
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.61
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.61
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.61
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.6
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.6
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.6
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.6
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.6
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.6
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.6
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.6
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.59
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.59
3lkd_A	542	Type I restriction-modification system methyltrans	99.59
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.59
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.59
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.59
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.58
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.58
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.58
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.58
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.58
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.57
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.57
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.57
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.57
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.57
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.57
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.57
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.57
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.56
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.56
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.56
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.56
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.56
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.56
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.55
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.55
3khk_A	544	Type I restriction-modification system methylation	99.55
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.55
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.55
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.55
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.55
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.55
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.54
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.54
2o07_A	304	Spermidine synthase; structural genomics, structur	99.54
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.54
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.54
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.54
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.54
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.54
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.54
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.54
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.54
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.53
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.53
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.53
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.53
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.53
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.53
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.53
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.53
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.52
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.52
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.52
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.52
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.51
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.51
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.51
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.51
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.51
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.51
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.51
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.51
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.5
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.5
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.5
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.5
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.5
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.5
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.5
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	99.5
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.49
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.49
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.49
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.49
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.49
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.49
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.49
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	99.49
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.48
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.48
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.48
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.48
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.48
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.48
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.48
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.48
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.48
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.48
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.47
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.47
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.46
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.46
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.46
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.46
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.46
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.46
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.45
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.45
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.45
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.45
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.45
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.44
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.44
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.44
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.44
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.43
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.43
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.43
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.43
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.43
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.42
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.42
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.42
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.41
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.41
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.41
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.41
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.41
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.41
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.4
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.4
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.39
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.39
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.39
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.39
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.39
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.38
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.38
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.38
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.35
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.34
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.34
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.33
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.33
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.33
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.33
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	99.32
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.32
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.31
3ll7_A	410	Putative methyltransferase; methytransferase, stru	99.3
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.28
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.28
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.28
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.26
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.26
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.25
3ufb_A	530	Type I restriction-modification system methyltran	99.25
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.24
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.24
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.24
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.23
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.23
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.22
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.21
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.21
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.21
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.2
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.19
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.19
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.19
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.17
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.16
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.15
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.13
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.13
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.12
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	99.1
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	99.09
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.06
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.05
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	99.04
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.02
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	99.0
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	99.0
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.98
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.96
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.95
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.92
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.92
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.92
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.92
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.88
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.88
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.87
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.86
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.78
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.7
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.64
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.64
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.64
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.57
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.37
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.36
2oo3_A	283	Protein involved in catabolism of external DNA; st	98.36
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.35
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.27
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	98.0
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.97
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.96
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.93
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.89
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.88
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	97.68
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.65
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	97.65
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	97.58
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.58
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	97.56
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.51
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	97.51
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	97.36
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.36
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	97.32
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	97.28
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.24
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.18
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	97.12
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	97.01
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	96.73
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	96.68
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	96.61
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	96.28
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	96.24
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	96.09
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	96.01
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	95.86
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	95.79
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	95.25
2hwk_A	320	Helicase NSP2; rossman fold, alpha/beta/alpha, mul	95.12
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	95.11
3me5_A	482	Cytosine-specific methyltransferase; structural ge	95.08
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	94.38
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	94.36
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	94.29
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	94.22
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	94.17
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	94.02
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	93.62
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	93.43
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	93.42
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	93.19
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	93.09
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	93.02
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	93.0
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	92.88
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	92.81
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	92.79
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	92.67
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	92.55
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	92.54
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	92.53
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	92.36
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	92.34
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	92.32
3gms_A	340	Putative NADPH:quinone reductase; structural genom	92.04
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	91.98
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	91.93
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	91.72
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	91.69
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	91.68
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	91.66
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	91.6
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	91.52
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	91.33
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	91.31
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	91.3
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	91.16
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	91.13
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	91.12
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	90.95
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	90.86
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	90.63
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	90.43
4eye_A	342	Probable oxidoreductase; structural genomics, niai	90.42
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	90.21
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	90.17
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	90.09
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	89.9
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	89.75
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	89.72
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	89.72
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	89.69
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	89.56
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	89.51
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	89.41
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	89.23
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	89.18
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	89.16
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	89.16
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	89.15
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	89.04
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	89.04
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	88.91
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	88.85
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	88.51
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	88.32
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	88.05
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	87.93
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	87.89
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	87.73
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	87.68
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	87.68
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	87.61
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	87.58
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	87.52
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	87.46
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	87.43
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	87.41
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	87.35
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	87.3
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	87.06
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	86.39
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	86.08
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	86.06
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	85.96
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	85.84
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	85.83
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	85.82
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	85.8
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	85.71
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	85.65
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	85.31
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	85.21
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	84.82
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	84.75
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	84.64
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	84.48
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	84.48
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	84.45
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	84.29
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	84.24
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	84.19
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	84.04
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	83.96
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	83.96
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	83.9
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	83.82
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	83.75
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	83.51
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	83.44
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	83.38
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	83.37
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	83.23
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	83.1
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	83.1
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	83.05
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	83.03
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	83.01
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	82.99
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	82.43
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	82.23
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	82.13
3imf_A	257	Short chain dehydrogenase; structural genomics, in	82.06
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	81.9
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	81.71
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	81.65
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	81.59
3c85_A	183	Putative glutathione-regulated potassium-efflux S	81.48
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	81.39
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	81.31
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	81.19
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	80.93
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	80.83
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	80.7
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	80.66
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	80.63
2dpm_A	284	M.dpnii 1, protein (adenine-specific methyltransfe	80.62
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	80.62
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	80.57
3cxt_A	291	Dehydrogenase with different specificities; rossma	80.31
3trk_A	324	Nonstructural polyprotein; hydrolase; 2.40A {Chiku	80.29

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=100.00  E-value=4.2e-42  Score=325.15  Aligned_cols=273  Identities=28%  Similarity=0.373  Sum_probs=235.3

Q ss_pred             HHHHHHHHHHHhhhccccccCCCCCCCccchHHHHHHHHHhccCCCCCcccccccCCccccccCchHHHHHHHHHHHhhc
Q 017476           66 LKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEK  145 (371)
Q Consensus        66 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~  145 (371)
                      +.+|++|+...+.  +.     +    .  ...|+++|++++++.++..+.+.     ....+..+..+.++.+..|+.+
T Consensus         3 ~~~~~~~~~~~l~--~~-----~----~--~~~~a~~ll~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~   64 (276)
T 2b3t_A            3 YQHWLREAISQLQ--AS-----E----S--PRRDAEILLEHVTGRGRTFILAF-----GETQLTDEQCQQLDALLTRRRD   64 (276)
T ss_dssp             HHHHHHHHHHTTT--TS-----S----C--HHHHHHHHHHHHHTCCHHHHHHT-----TTCBCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc--CC-----C----C--cHHHHHHHHHHHhCCCHHHHHhc-----cCCCCCHHHHHHHHHHHHHHHc
Confidence            6678888876641  11     1    1  23789999999999875333211     1234666666777788888899


Q ss_pred             CCceeeEeecccccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEE
Q 017476          146 RKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIA  225 (371)
Q Consensus       146 ~~P~~yi~g~~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~g  225 (371)
                      ++|++|++|..+||+..|.+++++++||++|+.+++.+++.+ .    .++.+|||+|||+|.+++.+++.+ ++.+|+|
T Consensus        65 ~~p~~~i~g~~~f~~~~~~~~~~~~ipr~~te~l~~~~l~~~-~----~~~~~vLDlG~GsG~~~~~la~~~-~~~~v~~  138 (276)
T 2b3t_A           65 GEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQALARL-P----EQPCRILDLGTGTGAIALALASER-PDCEIIA  138 (276)
T ss_dssp             TCCHHHHSCEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHS-C----SSCCEEEEETCTTSHHHHHHHHHC-TTSEEEE
T ss_pred             CCChhHeeeeeEECCceEEeCCCCcccCchHHHHHHHHHHhc-c----cCCCEEEEecCCccHHHHHHHHhC-CCCEEEE
Confidence            999999999999999999999999999999999999998876 2    245699999999999999999886 7889999


Q ss_pred             EeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcH
Q 017476          226 VDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGL  305 (371)
Q Consensus       226 vDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl  305 (371)
                      +|+|+.+++.|++|+..++++ +++++++|+.+.+.  .++||+|++||||++..+ .++.+++..|+|..++++|.+|+
T Consensus       139 vD~s~~~l~~a~~n~~~~~~~-~v~~~~~d~~~~~~--~~~fD~Iv~npPy~~~~~-~~l~~~v~~~~p~~al~~~~~g~  214 (276)
T 2b3t_A          139 VDRMPDAVSLAQRNAQHLAIK-NIHILQSDWFSALA--GQQFAMIVSNPPYIDEQD-PHLQQGDVRFEPLTALVAADSGM  214 (276)
T ss_dssp             ECSSHHHHHHHHHHHHHHTCC-SEEEECCSTTGGGT--TCCEEEEEECCCCBCTTC-HHHHSSGGGSSCSTTTBCHHHHT
T ss_pred             EECCHHHHHHHHHHHHHcCCC-ceEEEEcchhhhcc--cCCccEEEECCCCCCccc-cccChhhhhcCcHHHHcCCCcHH
Confidence            999999999999999999987 59999999988654  368999999999998877 67888999999999999999999


Q ss_pred             HHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEecCCCCceEEEEEe
Q 017476          306 DYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFR  370 (371)
Q Consensus       306 ~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~~  370 (371)
                      +.++.+++.+.++|+|||++++++ +..+.+.+.+++++   .||..+++.+|++|.+|+++++|
T Consensus       215 ~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~~~~~l~~---~Gf~~v~~~~d~~g~~r~~~~~~  275 (276)
T 2b3t_A          215 ADIVHIIEQSRNALVSGGFLLLEH-GWQQGEAVRQAFIL---AGYHDVETCRDYGDNERVTLGRY  275 (276)
T ss_dssp             HHHHHHHHHHGGGEEEEEEEEEEC-CSSCHHHHHHHHHH---TTCTTCCEEECTTSSEEEEEEEC
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEEE-CchHHHHHHHHHHH---CCCcEEEEEecCCCCCcEEEEEE
Confidence            999999999999999999999999 67899999999986   68999999999999999999875

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=100.00  E-value=5.7e-42  Score=326.80  Aligned_cols=265  Identities=29%  Similarity=0.398  Sum_probs=219.2

Q ss_pred             HHHHHHHHHHHHhhhccccccCCCCCCCccchHHHHHHHHHhccCCCCCcccccccCCccccccCchHHHHHHHHHHHhh
Q 017476           65 DLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIE  144 (371)
Q Consensus        65 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~  144 (371)
                      ++.+|++|+..++... .     ++      ...|+++|++++++.++..+.+.   ...+..++.   +.+..+.+|+.
T Consensus        15 ~~~~~~~~~~~~l~~~-~-----~~------~~~~a~~ll~~~~~~~~~~l~~~---~~~~~~~~~---~~~~~~~~~r~   76 (284)
T 1nv8_A           15 KIWSLIRDCSGKLEGV-T-----ET------SVLEVLLIVSRVLGIRKEDLFLK---DLGVSPTEE---KRILELVEKRA   76 (284)
T ss_dssp             CHHHHHHHHHHHTTTT-C-----SC------HHHHHHHHHHHHHTCCGGGGCCS---SCCCCHHHH---HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhc-c-----CC------hHHHHHHHHHHHcCCCHHHHHhc---cccccccCH---HHHHHHHHHHH
Confidence            3888999998776532 1     11      23789999999999986443311   100112222   45556666779


Q ss_pred             cCCceeeEeecccccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEE
Q 017476          145 KRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSII  224 (371)
Q Consensus       145 ~~~P~~yi~g~~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~  224 (371)
                      +++|++|++|..+|+++.|.|++++|+|||+|+.+++.+++.+...    ++.+|||+|||+|++++.+++.  ++.+|+
T Consensus        77 ~~~p~~yi~g~~~f~~~~~~v~~~~lipr~~te~lv~~~l~~~~~~----~~~~vLDlG~GsG~~~~~la~~--~~~~v~  150 (284)
T 1nv8_A           77 SGYPLHYILGEKEFMGLSFLVEEGVFVPRPETEELVELALELIRKY----GIKTVADIGTGSGAIGVSVAKF--SDAIVF  150 (284)
T ss_dssp             TTCCHHHHHTEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHHHHH----TCCEEEEESCTTSHHHHHHHHH--SSCEEE
T ss_pred             CCCCCeEEeeeeEECCeEEEeCCCceecChhHHHHHHHHHHHhccc----CCCEEEEEeCchhHHHHHHHHC--CCCEEE
Confidence            9999999999999999999999999999999999999999877211    3469999999999999999997  678999


Q ss_pred             EEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCce---eEEEEcCCCCCCCCcccchhhhcccCccccccCC
Q 017476          225 AVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKL---SGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGG  301 (371)
Q Consensus       225 gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~f---DlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg  301 (371)
                      |+|+|+.+++.|++|+..+++.++++++++|+++.+.   ++|   |+|++||||++..+  .+.+++. |+|..+|++|
T Consensus       151 ~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~---~~f~~~D~IvsnPPyi~~~~--~l~~~v~-~ep~~al~~~  224 (284)
T 1nv8_A          151 ATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFK---EKFASIEMILSNPPYVKSSA--HLPKDVL-FEPPEALFGG  224 (284)
T ss_dssp             EEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGG---GGTTTCCEEEECCCCBCGGG--SCTTSCC-CSCHHHHBCT
T ss_pred             EEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcc---cccCCCCEEEEcCCCCCccc--ccChhhc-cCcHHHhcCC
Confidence            9999999999999999999998889999999988654   478   99999999998877  7888998 9999999999


Q ss_pred             CCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEecCCCCceEEEEEeC
Q 017476          302 VDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFRQ  371 (371)
Q Consensus       302 ~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~~~  371 (371)
                      .+|++.++.++.   +.|+|||++++|+ +..|.+.+.+++++   .     ++++|++|++|+++++++
T Consensus       225 ~dgl~~~~~i~~---~~l~pgG~l~~e~-~~~q~~~v~~~~~~---~-----~~~~D~~g~~R~~~~~~k  282 (284)
T 1nv8_A          225 EDGLDFYREFFG---RYDTSGKIVLMEI-GEDQVEELKKIVSD---T-----VFLKDSAGKYRFLLLNRR  282 (284)
T ss_dssp             TTSCHHHHHHHH---HCCCTTCEEEEEC-CTTCHHHHTTTSTT---C-----EEEECTTSSEEEEEEECC
T ss_pred             CcHHHHHHHHHH---hcCCCCCEEEEEE-CchHHHHHHHHHHh---C-----CeecccCCCceEEEEEEc
Confidence            999987776651   5788999999999 67899999988874   2     899999999999999875

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.97  E-value=1.3e-31  Score=240.60  Aligned_cols=199  Identities=34%  Similarity=0.484  Sum_probs=137.6

Q ss_pred             eEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH
Q 017476          163 LSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (371)
Q Consensus       163 ~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~  242 (371)
                      |.+++++|+||++|+.+++.+++.+ ..  ..++.+|||+|||+|.+++.+++.. ++.+|+|+|+|+.+++.|++|+..
T Consensus         1 f~~~~~~~~p~~~~~~~~~~~~~~l-~~--~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~   76 (215)
T 4dzr_A            1 FEVGPDCLIPRPDTEVLVEEAIRFL-KR--MPSGTRVIDVGTGSGCIAVSIALAC-PGVSVTAVDLSMDALAVARRNAER   76 (215)
T ss_dssp             CBCSGGGGSCCHHHHHHHHHHHHHH-TT--CCTTEEEEEEESSBCHHHHHHHHHC-TTEEEEEEECC-------------
T ss_pred             CcCCCCccCCCccHHHHHHHHHHHh-hh--cCCCCEEEEecCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHH
Confidence            5688999999999999999999887 21  1356799999999999999999985 778999999999999999999998


Q ss_pred             cCCCCcEEEEEcCccccccc---CCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhccc
Q 017476          243 YGLQDIIEIRQGSWFGKLKD---VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASML  319 (371)
Q Consensus       243 ~gl~~~v~~~~gD~~~~l~~---~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~L  319 (371)
                      ++.  +++++++|+.+.+..   ..++||+|++||||+.......+..++..|+|..++.+|.+|++.+..+++.+.++|
T Consensus        77 ~~~--~~~~~~~d~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L  154 (215)
T 4dzr_A           77 FGA--VVDWAAADGIEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVL  154 (215)
T ss_dssp             --------CCHHHHHHHHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGB
T ss_pred             hCC--ceEEEEcchHhhhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHh
Confidence            887  599999999875432   137899999999999999988999999999999999999999999999999999999


Q ss_pred             ccCcE-EEEEECCcCcHHHHHHHHh--ccccCCceeEEEEecCCCCceEEEEEeC
Q 017476          320 KPGGF-FAFETNGEKQCKFLKNYLE--NDSACSFCNVSIVSDFAGIQRFVTGFRQ  371 (371)
Q Consensus       320 kpgG~-lvle~~~~~q~~~v~~~l~--~~~~~gf~~v~~~~Dl~g~~R~~~a~~~  371 (371)
                      +|||+ +++++ +..+.+.+.+++.  +   .||..+++.+|+.|..|+++++++
T Consensus       155 kpgG~l~~~~~-~~~~~~~~~~~l~~~~---~gf~~~~~~~~~~~~~r~~~~~~~  205 (215)
T 4dzr_A          155 ARGRAGVFLEV-GHNQADEVARLFAPWR---ERGFRVRKVKDLRGIDRVIAVTRE  205 (215)
T ss_dssp             CSSSEEEEEEC-TTSCHHHHHHHTGGGG---GGTEECCEEECTTSCEEEEEEEEC
T ss_pred             cCCCeEEEEEE-CCccHHHHHHHHHHhh---cCCceEEEEEecCCCEEEEEEEEc
Confidence            99999 77777 6788999999998  5   679999999999999999999874

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.93  E-value=1.1e-24  Score=202.45  Aligned_cols=208  Identities=17%  Similarity=0.196  Sum_probs=148.3

Q ss_pred             cccceeeEeeCCccccc----chHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHH
Q 017476          157 HWRDLVLSVEEGVFIPR----PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLA  232 (371)
Q Consensus       157 ~f~~~~~~v~~~vliPr----p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~a  232 (371)
                      .|++..|.+++++++|+    ++++.+++.+++.+ .. ...++.+|||+|||+|.+++.+++.. ++.+|+|+|+|+.+
T Consensus        25 ~~~~~~~~~~~~~~~p~~~~r~~~~~~~~~~~~~~-~~-~~~~~~~vLDlG~G~G~~~~~la~~~-~~~~v~gvD~s~~~  101 (254)
T 2h00_A           25 EDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQ-DS-DKSTLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMC  101 (254)
T ss_dssp             HHHCCCCCCCTTSCCCCHHHHHHHHHHHHHHHCCC-CG-GGCCCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHH
T ss_pred             HcCCeeeecCccccCCCccchHHHHHHHHHHHhhc-cc-cCCCCCEEEEeCCChhHHHHHHHHhC-CCCeEEEEECCHHH
Confidence            45688899999999998    67777777766543 11 00245699999999999999999875 66899999999999


Q ss_pred             HHHHHHHHHHcCCCCcEEEEEcCccc----ccccC-CCceeEEEEcCCCCCCC-Ccccc-hhhhcccCccccccCCC---
Q 017476          233 AAVAAFNAQRYGLQDIIEIRQGSWFG----KLKDV-EGKLSGVVSNPPYIPSD-DISGL-QVEVGKHEPRLALDGGV---  302 (371)
Q Consensus       233 l~~A~~n~~~~gl~~~v~~~~gD~~~----~l~~~-~~~fDlIvsNPPYi~~~-~~~~l-~~ev~~~ep~~aL~gg~---  302 (371)
                      ++.|++|+..+++.++++++++|..+    .+... +++||+|++||||+... +...+ ..++..++|..++.++.   
T Consensus       102 ~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  181 (254)
T 2h00_A          102 FNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEI  181 (254)
T ss_dssp             HHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTT
T ss_pred             HHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHH
Confidence            99999999999998889999999654    22211 15899999999998754 32333 24456678887877655   


Q ss_pred             ----CcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEecCCC-CceEEEEEe
Q 017476          303 ----DGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAG-IQRFVTGFR  370 (371)
Q Consensus       303 ----dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g-~~R~~~a~~  370 (371)
                          .++..+..+++.+.++|+++|+++.+++.....+.+.+++++   .||..+++.....| ..|+++++.
T Consensus       182 LkpgG~l~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~---~Gf~~v~~~~~~~g~~~~~~~~w~  251 (254)
T 2h00_A          182 MAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEELRI---QGVPKVTYTEFCQGRTMRWALAWS  251 (254)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHHHHHHH---TTCSEEEEEEEEETTEEEEEEEEE
T ss_pred             EecCCEEEEEHHHHHHHHhcccceEEEEECCCChhHHHHHHHHHHH---cCCCceEEEEEecCCceEEEEEee
Confidence                578888899998889999999999999544444788889886   78999988877665 566777753

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.92  E-value=1.9e-23  Score=190.71  Aligned_cols=191  Identities=18%  Similarity=0.171  Sum_probs=138.1

Q ss_pred             cccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCc-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 017476          157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAV  235 (371)
Q Consensus       157 ~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~G-sG~~al~la~~~~~~~~V~gvDis~~al~~  235 (371)
                      .|++..+.+++++++|+++++.+.   +...     ..++.+|||+||| +|.+++.+++..  +.+|+|+|+|+.+++.
T Consensus        25 ~~~~~~~~~~~~~~~p~~~~~~l~---~~~~-----~~~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~   94 (230)
T 3evz_A           25 ALFGLDIEYHPKGLVTTPISRYIF---LKTF-----LRGGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEY   94 (230)
T ss_dssp             HHHCCCCCCCTTSCCCCHHHHHHH---HHTT-----CCSSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHH
T ss_pred             HhcCCceecCCCeEeCCCchhhhH---hHhh-----cCCCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHH
Confidence            467888999999999999998773   1111     1246799999999 999999999974  6799999999999999


Q ss_pred             HHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHH
Q 017476          236 AAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGT  315 (371)
Q Consensus       236 A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a  315 (371)
                      |++|+..+++  +++++++|+........++||+|++||||....+.       ..++|..++.++.+|++.+..+++.+
T Consensus        95 a~~~~~~~~~--~v~~~~~d~~~~~~~~~~~fD~I~~npp~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~  165 (230)
T 3evz_A           95 ARRNIERNNS--NVRLVKSNGGIIKGVVEGTFDVIFSAPPYYDKPLG-------RVLTEREAIGGGKYGEEFSVKLLEEA  165 (230)
T ss_dssp             HHHHHHHTTC--CCEEEECSSCSSTTTCCSCEEEEEECCCCC----------------------CCSSSCHHHHHHHHHH
T ss_pred             HHHHHHHhCC--CcEEEeCCchhhhhcccCceeEEEECCCCcCCccc-------cccChhhhhccCccchHHHHHHHHHH
Confidence            9999999988  59999999633222223789999999999876542       13677888999999999999999999


Q ss_pred             hcccccCcEEEEEECC-cCcHHHHHHHHhccccCCceeEEEEecCCCCceEEEEE
Q 017476          316 ASMLKPGGFFAFETNG-EKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGF  369 (371)
Q Consensus       316 ~~~LkpgG~lvle~~~-~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~  369 (371)
                      .++|+|||++++.+.. ..+.+.+.+.+++   .||.-..+........+.++++
T Consensus       166 ~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~---~g~~~~~~~~~~g~~~~~~l~f  217 (230)
T 3evz_A          166 FDHLNPGGKVALYLPDKEKLLNVIKERGIK---LGYSVKDIKFKVGTRWRHSLIF  217 (230)
T ss_dssp             GGGEEEEEEEEEEEESCHHHHHHHHHHHHH---TTCEEEEEEECCCC-CEEEEEE
T ss_pred             HHHhCCCeEEEEEecccHhHHHHHHHHHHH---cCCceEEEEecCCCeEEEEEEE
Confidence            9999999999997742 3466778888875   6784444433333344444444

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.88  E-value=9.2e-22  Score=172.68  Aligned_cols=160  Identities=19%  Similarity=0.228  Sum_probs=131.3

Q ss_pred             CcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC
Q 017476          168 GVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQD  247 (371)
Q Consensus       168 ~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~  247 (371)
                      .||+|+++++.+++.+ +..     ..++.+|||+|||+|.+++.+++.   . +|+|+|+|+.+++.          .+
T Consensus         2 ~v~~P~~~~~~l~~~l-~~~-----~~~~~~vLD~GcG~G~~~~~l~~~---~-~v~gvD~s~~~~~~----------~~   61 (170)
T 3q87_B            2 DWYEPGEDTYTLMDAL-ERE-----GLEMKIVLDLGTSTGVITEQLRKR---N-TVVSTDLNIRALES----------HR   61 (170)
T ss_dssp             CSCCCCHHHHHHHHHH-HHH-----TCCSCEEEEETCTTCHHHHHHTTT---S-EEEEEESCHHHHHT----------CS
T ss_pred             cccCcCccHHHHHHHH-Hhh-----cCCCCeEEEeccCccHHHHHHHhc---C-cEEEEECCHHHHhc----------cc
Confidence            4799999999999984 332     123569999999999999999885   2 99999999999987          24


Q ss_pred             cEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEE
Q 017476          248 IIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF  327 (371)
Q Consensus       248 ~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvl  327 (371)
                      +++++++|+.++...  ++||+|++||||.+..+...             +.+|.++...++.+++.+     |||++++
T Consensus        62 ~~~~~~~d~~~~~~~--~~fD~i~~n~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~l-----pgG~l~~  121 (170)
T 3q87_B           62 GGNLVRADLLCSINQ--ESVDVVVFNPPYVPDTDDPI-------------IGGGYLGREVIDRFVDAV-----TVGMLYL  121 (170)
T ss_dssp             SSCEEECSTTTTBCG--GGCSEEEECCCCBTTCCCTT-------------TBCCGGGCHHHHHHHHHC-----CSSEEEE
T ss_pred             CCeEEECChhhhccc--CCCCEEEECCCCccCCcccc-------------ccCCcchHHHHHHHHhhC-----CCCEEEE
Confidence            589999999886543  78999999999987654211             567777888777777544     9999999


Q ss_pred             EECCcCcHHHHHHHHhccccCCceeEEEEecCCCCceEEEEEe
Q 017476          328 ETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFR  370 (371)
Q Consensus       328 e~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~~  370 (371)
                      ...+..+.+.+.+++++   .||..+++..+..|.+|++..+.
T Consensus       122 ~~~~~~~~~~l~~~l~~---~gf~~~~~~~~~~~~e~~~~~~~  161 (170)
T 3q87_B          122 LVIEANRPKEVLARLEE---RGYGTRILKVRKILGETVYIIKG  161 (170)
T ss_dssp             EEEGGGCHHHHHHHHHH---TTCEEEEEEEEECSSSEEEEEEE
T ss_pred             EEecCCCHHHHHHHHHH---CCCcEEEEEeeccCCceEEEEEE
Confidence            88777889999999986   78999999999999999987763

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.82  E-value=3.8e-19  Score=178.59  Aligned_cols=185  Identities=17%  Similarity=0.171  Sum_probs=142.0

Q ss_pred             cCchHHHHHHHHHHHhh-------cCCceeeEeeccccc---ceeeEeeCCcccc--cchHHHHHHHHHHHhhhcCCCCC
Q 017476          128 LRIGLDELYGLWKQRIE-------KRKPFQYLVGCEHWR---DLVLSVEEGVFIP--RPETELMVDLVSDVLVRDNDGLR  195 (371)
Q Consensus       128 l~~~~~~~~~~~~~r~~-------~~~P~~yi~g~~~f~---~~~~~v~~~vliP--rp~te~lv~~~~~~~~~~~~~~~  195 (371)
                      ++....+.+..+.+++.       .++|++|+.|..+|+   ++.|.+++++|++  ++.++.+++.+++.+    ...+
T Consensus       211 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~g~~~~~~~~~f~q~n~~~~e~l~~~~~~~l----~~~~  286 (433)
T 1uwv_A          211 LSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWL----DVQP  286 (433)
T ss_dssp             CCHHHHHHHHHHHHHHTCEEEEESSSSCCEEEECCCCEEEETTEEEECCSSSCCCSBHHHHHHHHHHHHHHH----TCCT
T ss_pred             CCHHHHHHHHHHhhcccEEEEEECCCCeEEEEeCCCcEEEECCEEEEECcccccccCHHHHHHHHHHHHHhh----cCCC
Confidence            33344445555655543       678999999998888   9999999999998  678999999999887    2234


Q ss_pred             CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc---CCCceeEEEE
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD---VEGKLSGVVS  272 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~---~~~~fDlIvs  272 (371)
                      +.+|||+|||+|.+++.+++.   ..+|+|+|+|+.+++.|++|++.+++. +++|+++|+.+.+..   ..++||+|++
T Consensus       287 ~~~VLDlgcG~G~~~~~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~f~~~d~~~~l~~~~~~~~~fD~Vv~  362 (433)
T 1uwv_A          287 EDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEEDVTKQPWAKNGFDKVLL  362 (433)
T ss_dssp             TCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCTTSCCSSSGGGTTCCSEEEE
T ss_pred             CCEEEECCCCCCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEECCHHHHhhhhhhhcCCCCEEEE
Confidence            569999999999999999985   579999999999999999999999987 599999999875432   2358999999


Q ss_pred             cCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCcee
Q 017476          273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCN  352 (371)
Q Consensus       273 NPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~  352 (371)
                      ||||....                             .+++... .++|++++++.++.......+..+.+    .||..
T Consensus       363 dPPr~g~~-----------------------------~~~~~l~-~~~p~~ivyvsc~p~tlard~~~l~~----~Gy~~  408 (433)
T 1uwv_A          363 DPARAGAA-----------------------------GVMQQII-KLEPIRIVYVSCNPATLARDSEALLK----AGYTI  408 (433)
T ss_dssp             CCCTTCCH-----------------------------HHHHHHH-HHCCSEEEEEESCHHHHHHHHHHHHH----TTCEE
T ss_pred             CCCCccHH-----------------------------HHHHHHH-hcCCCeEEEEECChHHHHhhHHHHHH----CCcEE
Confidence            99996421                             1222221 37899999999865545555555443    57865


Q ss_pred             EE
Q 017476          353 VS  354 (371)
Q Consensus       353 v~  354 (371)
                      .+
T Consensus       409 ~~  410 (433)
T 1uwv_A          409 AR  410 (433)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.82  E-value=1.4e-19  Score=169.53  Aligned_cols=155  Identities=17%  Similarity=0.153  Sum_probs=111.9

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH---cCCCCcEEEEEcCcccccc------cCCC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR---YGLQDIIEIRQGSWFGKLK------DVEG  265 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~---~gl~~~v~~~~gD~~~~l~------~~~~  265 (371)
                      ++.+|||+|||+|.+++.+++.. +..+|+|||+++.+++.|++|+..   +++.++++++++|+.+...      ...+
T Consensus        36 ~~~~VLDlG~G~G~~~l~la~~~-~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  114 (260)
T 2ozv_A           36 RACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDE  114 (260)
T ss_dssp             SCEEEEECCSSSSHHHHHHHHHC-TTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTT
T ss_pred             CCCEEEEeCChHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCC
Confidence            45699999999999999999985 778999999999999999999998   8888889999999987532      1246


Q ss_pred             ceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhcc
Q 017476          266 KLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLEND  345 (371)
Q Consensus       266 ~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~  345 (371)
                      +||+|++||||.....  ...++..+   ..++..+.++   +..+++.+.++|+|||++++++ +..+...+.+.+++ 
T Consensus       115 ~fD~Vv~nPPy~~~~~--~~~~~~~~---~~a~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~~~~~l~~-  184 (260)
T 2ozv_A          115 HFHHVIMNPPYNDAGD--RRTPDALK---AEAHAMTEGL---FEDWIRTASAIMVSGGQLSLIS-RPQSVAEIIAACGS-  184 (260)
T ss_dssp             CEEEEEECCCC--------------------------CC---HHHHHHHHHHHEEEEEEEEEEE-CGGGHHHHHHHHTT-
T ss_pred             CcCEEEECCCCcCCCC--CCCcCHHH---HHHhhcCcCC---HHHHHHHHHHHcCCCCEEEEEE-cHHHHHHHHHHHHh-
Confidence            8999999999987541  12222211   2232222222   5578999999999999999999 45677778888774 


Q ss_pred             ccCCceeEEEEecCCCCc
Q 017476          346 SACSFCNVSIVSDFAGIQ  363 (371)
Q Consensus       346 ~~~gf~~v~~~~Dl~g~~  363 (371)
                        . |..+++.......+
T Consensus       185 --~-~~~~~i~~v~~~~~  199 (260)
T 2ozv_A          185 --R-FGGLEITLIHPRPG  199 (260)
T ss_dssp             --T-EEEEEEEEEESSTT
T ss_pred             --c-CCceEEEEEcCCCC
Confidence              3 87777777655443

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.82  E-value=1.3e-19  Score=170.64  Aligned_cols=180  Identities=18%  Similarity=0.182  Sum_probs=141.6

Q ss_pred             CceeeEeecccccceeeEeeCC--cccccchHHHHHHHHHHH-----------hhhcCCCCCCCeEEEECCcccHHHHHH
Q 017476          147 KPFQYLVGCEHWRDLVLSVEEG--VFIPRPETELMVDLVSDV-----------LVRDNDGLRDGFWVDLGTGSGAIAIGI  213 (371)
Q Consensus       147 ~P~~yi~g~~~f~~~~~~v~~~--vliPrp~te~lv~~~~~~-----------~~~~~~~~~~~~VLDlG~GsG~~al~l  213 (371)
                      .|.++++|.  +++..+.+..+  +++++|+++.+.+.+...           +.......++.+|||+|||+|.+++.+
T Consensus        53 ~~~~~i~g~--~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l  130 (277)
T 1o54_A           53 IDLNEVFEK--GPGEIIRTSAGKKGYILIPSLIDEIMNMKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVL  130 (277)
T ss_dssp             EEHHHHTTS--CTTCEEECTTCCEEEEECCCHHHHHHTCCC-CCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHH
T ss_pred             EEHHHhcCC--CCCcEEEEcCCcEEEEeCCCHHHHHhhccccCCccCHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHH
Confidence            456667775  34677888877  888999999887643211           101113345679999999999999999


Q ss_pred             HHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccC
Q 017476          214 ARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHE  293 (371)
Q Consensus       214 a~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~e  293 (371)
                      ++.+++..+|+++|+++.+++.|++|+..+++.++++++.+|+.+.++  .++||+|++|||+..               
T Consensus       131 a~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~D~V~~~~~~~~---------------  193 (277)
T 1o54_A          131 ARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFD--EKDVDALFLDVPDPW---------------  193 (277)
T ss_dssp             HHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCS--CCSEEEEEECCSCGG---------------
T ss_pred             HHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHccc--CCccCEEEECCcCHH---------------
Confidence            998656789999999999999999999999986779999999987643  368999999987420               


Q ss_pred             ccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEecCCCCce
Q 017476          294 PRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQR  364 (371)
Q Consensus       294 p~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R  364 (371)
                                      .+++.+.+.|+|||+++++.....+...+.+.+++   .||..+++..++.+..+
T Consensus       194 ----------------~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~---~gf~~~~~~~~~~~~~~  245 (277)
T 1o54_A          194 ----------------NYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQE---LPFIRIEVWESLFRPYK  245 (277)
T ss_dssp             ----------------GTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHH---SSEEEEEEECCCCCCEE
T ss_pred             ----------------HHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH---CCCceeEEEEEeeeeeE
Confidence                            46677788999999999999655677788888875   78999999988876644

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.82  E-value=2.7e-19  Score=160.32  Aligned_cols=158  Identities=20%  Similarity=0.157  Sum_probs=123.0

Q ss_pred             cchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q 017476          173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIR  252 (371)
Q Consensus       173 rp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~  252 (371)
                      +++++.+++.+++.+... ...++.+|||+|||+|.++..+++.+ ++.+|+|+|+|+.+++.|++|+..+++.+ ++++
T Consensus        44 ~~~~~~~~~~~~~~l~~~-~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~  120 (207)
T 1jsx_A           44 RDPNEMLVRHILDSIVVA-PYLQGERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPV  120 (207)
T ss_dssp             ----CHHHHHHHHHHHHG-GGCCSSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEE
T ss_pred             CCHHHHHHHHHHhhhhhh-hhcCCCeEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEE
Confidence            788888888888776221 11235699999999999999999985 77899999999999999999999999876 9999


Q ss_pred             EcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCc
Q 017476          253 QGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGE  332 (371)
Q Consensus       253 ~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~  332 (371)
                      ++|+.+...  .++||+|++|.-                              ..+..+++.+.+.|+|||+++++. +.
T Consensus       121 ~~d~~~~~~--~~~~D~i~~~~~------------------------------~~~~~~l~~~~~~L~~gG~l~~~~-~~  167 (207)
T 1jsx_A          121 QSRVEEFPS--EPPFDGVISRAF------------------------------ASLNDMVSWCHHLPGEQGRFYALK-GQ  167 (207)
T ss_dssp             ECCTTTSCC--CSCEEEEECSCS------------------------------SSHHHHHHHHTTSEEEEEEEEEEE-SS
T ss_pred             ecchhhCCc--cCCcCEEEEecc------------------------------CCHHHHHHHHHHhcCCCcEEEEEe-CC
Confidence            999977542  368999999620                              113478899999999999999999 56


Q ss_pred             CcHHHHHHHHhccccCCceeEE----EEecCCCCceEEEEEeC
Q 017476          333 KQCKFLKNYLENDSACSFCNVS----IVSDFAGIQRFVTGFRQ  371 (371)
Q Consensus       333 ~q~~~v~~~l~~~~~~gf~~v~----~~~Dl~g~~R~~~a~~~  371 (371)
                      .+.+.+.+++.     ||..++    .+++..|..++++.+|+
T Consensus       168 ~~~~~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~k~  205 (207)
T 1jsx_A          168 MPEDEIALLPE-----EYQVESVVKLQVPALDGERHLVVIKAN  205 (207)
T ss_dssp             CCHHHHHTSCT-----TEEEEEEEEEECC--CCEEEEEEEEEC
T ss_pred             CchHHHHHHhc-----CCceeeeeeeccCCCCCceEEEEEEec
Confidence            77777777653     687776    66889999999988764

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.82  E-value=4.3e-19  Score=165.63  Aligned_cols=172  Identities=22%  Similarity=0.243  Sum_probs=122.2

Q ss_pred             ceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCC-CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476          160 DLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGL-RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       160 ~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~-~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~  238 (371)
                      ++.+..++..+-+..++.++..++        ... ++.+|||+|||+|.+++.+++.. + .+|+|+|+++.+++.|++
T Consensus        21 ~~~i~q~~~~~~~~~d~~ll~~~~--------~~~~~~~~vLDlG~G~G~~~~~la~~~-~-~~v~gvDi~~~~~~~a~~   90 (259)
T 3lpm_A           21 NLRIIQSPSVFSFSIDAVLLAKFS--------YLPIRKGKIIDLCSGNGIIPLLLSTRT-K-AKIVGVEIQERLADMAKR   90 (259)
T ss_dssp             TEEEEEBTTTBCCCHHHHHHHHHC--------CCCSSCCEEEETTCTTTHHHHHHHTTC-C-CEEEEECCSHHHHHHHHH
T ss_pred             CEEEEeCCCCccCcHHHHHHHHHh--------cCCCCCCEEEEcCCchhHHHHHHHHhc-C-CcEEEEECCHHHHHHHHH
Confidence            566777777776655544444332        222 46799999999999999999863 3 499999999999999999


Q ss_pred             HHHHcCCCCcEEEEEcCcccccccC-CCceeEEEEcCCCCCCCCcccch----hhhcccCccccccCCCCcHHHHHHHHH
Q 017476          239 NAQRYGLQDIIEIRQGSWFGKLKDV-EGKLSGVVSNPPYIPSDDISGLQ----VEVGKHEPRLALDGGVDGLDYLLHLCN  313 (371)
Q Consensus       239 n~~~~gl~~~v~~~~gD~~~~l~~~-~~~fDlIvsNPPYi~~~~~~~l~----~ev~~~ep~~aL~gg~dGl~~~~~il~  313 (371)
                      |+..+++.++++++++|+.+..... .++||+|++||||..........    ....+|+          ....+..+++
T Consensus        91 n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~----------~~~~~~~~l~  160 (259)
T 3lpm_A           91 SVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHE----------VMCTLEDTIR  160 (259)
T ss_dssp             HHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECCCC---------------------------------HHHHHHHH
T ss_pred             HHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECCCCCCCccccCCCCchHHHhhhcc----------ccCCHHHHHH
Confidence            9999999888999999998764322 47899999999997652211111    1122222          2345678999


Q ss_pred             HHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEE
Q 017476          314 GTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSI  355 (371)
Q Consensus       314 ~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~  355 (371)
                      .+.++|+|||++++.+ ...+...+...+++   .+|....+
T Consensus       161 ~~~~~LkpgG~l~~~~-~~~~~~~~~~~l~~---~~~~~~~~  198 (259)
T 3lpm_A          161 VAASLLKQGGKANFVH-RPERLLDIIDIMRK---YRLEPKRI  198 (259)
T ss_dssp             HHHHHEEEEEEEEEEE-CTTTHHHHHHHHHH---TTEEEEEE
T ss_pred             HHHHHccCCcEEEEEE-cHHHHHHHHHHHHH---CCCceEEE
Confidence            9999999999999988 45677778888875   56765443

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.82  E-value=2e-19  Score=159.54  Aligned_cols=144  Identities=19%  Similarity=0.209  Sum_probs=112.8

Q ss_pred             cccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 017476          157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA  236 (371)
Q Consensus       157 ~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A  236 (371)
                      .|.+..+.+.+  ..+||.++.+.+.+.+.+... ...++.+|||+|||+|.+++.+++.  +..+|+|+|+|+.+++.|
T Consensus         9 ~~~g~~l~~~~--~~~rp~~~~~~~~l~~~l~~~-~~~~~~~vLDlgcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a   83 (189)
T 3p9n_A            9 VAGGRRIAVPP--RGTRPTTDRVRESLFNIVTAR-RDLTGLAVLDLYAGSGALGLEALSR--GAASVLFVESDQRSAAVI   83 (189)
T ss_dssp             TTTTCEEECCS--CCC---CHHHHHHHHHHHHHH-SCCTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEECCHHHHHHH
T ss_pred             ccCCcEecCCC--CCCccCcHHHHHHHHHHHHhc-cCCCCCEEEEeCCCcCHHHHHHHHC--CCCeEEEEECCHHHHHHH
Confidence            46678888777  678899999999888877321 1235679999999999999988874  556899999999999999


Q ss_pred             HHHHHHcCCCCcEEEEEcCcccccccC-CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHH
Q 017476          237 AFNAQRYGLQDIIEIRQGSWFGKLKDV-EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGT  315 (371)
Q Consensus       237 ~~n~~~~gl~~~v~~~~gD~~~~l~~~-~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a  315 (371)
                      ++|++.+++ ++++++++|+.+..... .++||+|++||||...                         ...+..+++.+
T Consensus        84 ~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~~~~-------------------------~~~~~~~l~~~  137 (189)
T 3p9n_A           84 ARNIEALGL-SGATLRRGAVAAVVAAGTTSPVDLVLADPPYNVD-------------------------SADVDAILAAL  137 (189)
T ss_dssp             HHHHHHHTC-SCEEEEESCHHHHHHHCCSSCCSEEEECCCTTSC-------------------------HHHHHHHHHHH
T ss_pred             HHHHHHcCC-CceEEEEccHHHHHhhccCCCccEEEECCCCCcc-------------------------hhhHHHHHHHH
Confidence            999999998 56999999997754322 4789999999998632                         13344677777


Q ss_pred             hc--ccccCcEEEEEECC
Q 017476          316 AS--MLKPGGFFAFETNG  331 (371)
Q Consensus       316 ~~--~LkpgG~lvle~~~  331 (371)
                      .+  +|+|||.+++++..
T Consensus       138 ~~~~~L~pgG~l~~~~~~  155 (189)
T 3p9n_A          138 GTNGWTREGTVAVVERAT  155 (189)
T ss_dssp             HHSSSCCTTCEEEEEEET
T ss_pred             HhcCccCCCeEEEEEecC
Confidence            77  99999999999853

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.80  E-value=3.2e-18  Score=150.38  Aligned_cols=177  Identities=23%  Similarity=0.322  Sum_probs=135.3

Q ss_pred             CceeeEeecccccceeeEeeCCccccc---chHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEE
Q 017476          147 KPFQYLVGCEHWRDLVLSVEEGVFIPR---PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSI  223 (371)
Q Consensus       147 ~P~~yi~g~~~f~~~~~~v~~~vliPr---p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V  223 (371)
                      ...+++.+...-..+.+...++++.|+   ..++.+++.    +    ...++.+|||+|||+|.++..+++.   ..+|
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~----~~~~~~~vLdiG~G~G~~~~~~~~~---~~~v   77 (194)
T 1dus_A            9 SDVKIVEDILRGKKLKFKTDSGVFSYGKVDKGTKILVEN----V----VVDKDDDILDLGCGYGVIGIALADE---VKST   77 (194)
T ss_dssp             CCEEEEEEEETTEEEEEEEETTSTTTTSCCHHHHHHHHH----C----CCCTTCEEEEETCTTSHHHHHHGGG---SSEE
T ss_pred             ccccEEeeecCCCceEEEeCCCcCCccccchHHHHHHHH----c----ccCCCCeEEEeCCCCCHHHHHHHHc---CCeE
Confidence            344555554333456677888899887   344544443    3    2225679999999999999999885   5799


Q ss_pred             EEEeCCHHHHHHHHHHHHHcCCCC-cEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCC
Q 017476          224 IAVDLNPLAAAVAAFNAQRYGLQD-IIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGV  302 (371)
Q Consensus       224 ~gvDis~~al~~A~~n~~~~gl~~-~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~  302 (371)
                      +|+|+++.+++.|++|+..+++.+ +++++.+|+.+...  .++||+|++||||..                        
T Consensus        78 ~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~~~~~~~------------------------  131 (194)
T 1dus_A           78 TMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK--DRKYNKIITNPPIRA------------------------  131 (194)
T ss_dssp             EEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT--TSCEEEEEECCCSTT------------------------
T ss_pred             EEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc--cCCceEEEECCCccc------------------------
Confidence            999999999999999999998875 69999999987654  368999999999853                        


Q ss_pred             CcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEecCCCCceE
Q 017476          303 DGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRF  365 (371)
Q Consensus       303 dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~  365 (371)
                       +.+....+++.+.+.|+|||.+++..........+.+.+++   . |..++++.+..|...+
T Consensus       132 -~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~---~-~~~~~~~~~~~~~~~~  189 (194)
T 1dus_A          132 -GKEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKD---V-FGNVETVTIKGGYRVL  189 (194)
T ss_dssp             -CHHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHH---H-HSCCEEEEEETTEEEE
T ss_pred             -chhHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHH---H-hcceEEEecCCcEEEE
Confidence             12345578899999999999999999665566667888875   3 7788888877775443

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.79  E-value=1.2e-18  Score=157.74  Aligned_cols=169  Identities=15%  Similarity=0.146  Sum_probs=126.3

Q ss_pred             eeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 017476          162 VLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (371)
Q Consensus       162 ~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~  241 (371)
                      .+...+.+++|+|++. ..++. +.. .    .++.+|||+|||+|.+++.+++.. ++.+|+|+|+|+.+++.|++|+.
T Consensus        15 ~~~~~~~~~~~~p~~~-~~~~~-~~f-~----~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~a~~~~~   86 (214)
T 1yzh_A           15 LLEANPQYVVLNPLEA-KAKWR-DLF-G----NDNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVL   86 (214)
T ss_dssp             HHHTCTTTEECCGGGT-TTTHH-HHH-T----SCCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHH
T ss_pred             HHHhCCCEEecChhhc-ccCHH-HHc-C----CCCCeEEEEccCcCHHHHHHHHHC-CCCCEEEEEcCHHHHHHHHHHHH
Confidence            3445567888888752 22322 222 1    135689999999999999999985 78899999999999999999999


Q ss_pred             HcCCCCcEEEEEcCcccccc-cCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccc
Q 017476          242 RYGLQDIIEIRQGSWFGKLK-DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLK  320 (371)
Q Consensus       242 ~~gl~~~v~~~~gD~~~~l~-~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~Lk  320 (371)
                      .+++. +++++++|+.+... ...++||+|++|+|-....         .+|+++..         .+..+++.+.+.|+
T Consensus        87 ~~~~~-~v~~~~~d~~~~~~~~~~~~~D~i~~~~~~~~~~---------~~~~~~~~---------~~~~~l~~~~~~Lk  147 (214)
T 1yzh_A           87 EVGVP-NIKLLWVDGSDLTDYFEDGEIDRLYLNFSDPWPK---------KRHEKRRL---------TYKTFLDTFKRILP  147 (214)
T ss_dssp             HHCCS-SEEEEECCSSCGGGTSCTTCCSEEEEESCCCCCS---------GGGGGGST---------TSHHHHHHHHHHSC
T ss_pred             HcCCC-CEEEEeCCHHHHHhhcCCCCCCEEEEECCCCccc---------cchhhhcc---------CCHHHHHHHHHHcC
Confidence            99984 59999999976321 1246899999998742211         13333321         13478899999999


Q ss_pred             cCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEecCC
Q 017476          321 PGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFA  360 (371)
Q Consensus       321 pgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~  360 (371)
                      |||.++++++...+.+.+.+.+.+   .||..+.+..|+.
T Consensus       148 pgG~l~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~d~~  184 (214)
T 1yzh_A          148 ENGEIHFKTDNRGLFEYSLVSFSQ---YGMKLNGVWLDLH  184 (214)
T ss_dssp             TTCEEEEEESCHHHHHHHHHHHHH---HTCEEEEEESSGG
T ss_pred             CCcEEEEEeCCHHHHHHHHHHHHH---CCCeeeecccccc
Confidence            999999999665677788888875   5798888888864

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.79  E-value=4.3e-19  Score=155.96  Aligned_cols=145  Identities=20%  Similarity=0.232  Sum_probs=114.1

Q ss_pred             cccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 017476          157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA  236 (371)
Q Consensus       157 ~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A  236 (371)
                      .|++..|.+.++. .+||.++.+++.+.+.+ ..  ..++.+|||+|||+|.+++.+++.  +..+|+|+|+|+.+++.|
T Consensus        10 ~~~~~~~~~~~~~-~~rp~~~~~~~~~~~~l-~~--~~~~~~vLD~GcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a   83 (187)
T 2fhp_A           10 EYGGRRLKALDGD-NTRPTTDKVKESIFNMI-GP--YFDGGMALDLYSGSGGLAIEAVSR--GMDKSICIEKNFAALKVI   83 (187)
T ss_dssp             TTTTCBCCCCCCC-SSCCCCHHHHHHHHHHH-CS--CCSSCEEEETTCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHH
T ss_pred             cccCccccCCCCC-CcCcCHHHHHHHHHHHH-Hh--hcCCCCEEEeCCccCHHHHHHHHc--CCCEEEEEECCHHHHHHH
Confidence            6778888888876 88999999999998877 21  235679999999999999998884  557999999999999999


Q ss_pred             HHHHHHcCCCCcEEEEEcCccccccc---CCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHH
Q 017476          237 AFNAQRYGLQDIIEIRQGSWFGKLKD---VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCN  313 (371)
Q Consensus       237 ~~n~~~~gl~~~v~~~~gD~~~~l~~---~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~  313 (371)
                      ++|+..+++.++++++++|+.+....   ..++||+|++||||.....                       ...+..+ .
T Consensus        84 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~~~~-----------------------~~~~~~l-~  139 (187)
T 2fhp_A           84 KENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQEI-----------------------VSQLEKM-L  139 (187)
T ss_dssp             HHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCCH-----------------------HHHHHHH-H
T ss_pred             HHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCCchhH-----------------------HHHHHHH-H
Confidence            99999999877899999999774431   1468999999999852110                       0111122 1


Q ss_pred             HHhcccccCcEEEEEECCc
Q 017476          314 GTASMLKPGGFFAFETNGE  332 (371)
Q Consensus       314 ~a~~~LkpgG~lvle~~~~  332 (371)
                       +.++|+|||++++++...
T Consensus       140 -~~~~L~~gG~l~~~~~~~  157 (187)
T 2fhp_A          140 -ERQLLTNEAVIVCETDKT  157 (187)
T ss_dssp             -HTTCEEEEEEEEEEEETT
T ss_pred             -HhcccCCCCEEEEEeCCc
Confidence             378999999999998543

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.77  E-value=1.2e-18  Score=162.40  Aligned_cols=184  Identities=15%  Similarity=0.008  Sum_probs=122.8

Q ss_pred             HHHHHHHHhhcCCceeeEeecccccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHH
Q 017476          135 LYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIA  214 (371)
Q Consensus       135 ~~~~~~~r~~~~~P~~yi~g~~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la  214 (371)
                      .|..+..++.++.|++|+.+..+||...|..+..++.|++                  ..++.+|||+|||+|.+++.+|
T Consensus        38 ~~~~~l~~~~~~~nl~~i~~~~~~~~~~~~ds~~~l~~~~------------------~~~~~~vLDiG~G~G~~~i~la   99 (249)
T 3g89_A           38 RLYALLQEASGKVNLTALRGEEEVVVKHFLDSLTLLRLPL------------------WQGPLRVLDLGTGAGFPGLPLK   99 (249)
T ss_dssp             HHHHHHHHC----------CHHHHHHHHHHHHHGGGGSSC------------------CCSSCEEEEETCTTTTTHHHHH
T ss_pred             HHHHHHHHHhcCCCCceECCHHHHhhceeeechhhhcccc------------------cCCCCEEEEEcCCCCHHHHHHH
Confidence            3444445557889999999998888777766666666532                  1245699999999999999999


Q ss_pred             HHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc--cCCCceeEEEEcCCCCCCCCcccchhhhccc
Q 017476          215 RVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK--DVEGKLSGVVSNPPYIPSDDISGLQVEVGKH  292 (371)
Q Consensus       215 ~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~--~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~  292 (371)
                      ..+ ++.+|+|+|+|+.+++.|++|++.+++.+ ++++++|+.+...  ...++||+|+++-              +   
T Consensus       100 ~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~l~~-v~~~~~d~~~~~~~~~~~~~fD~I~s~a--------------~---  160 (249)
T 3g89_A          100 IVR-PELELVLVDATRKKVAFVERAIEVLGLKG-ARALWGRAEVLAREAGHREAYARAVARA--------------V---  160 (249)
T ss_dssp             HHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEECCHHHHTTSTTTTTCEEEEEEES--------------S---
T ss_pred             HHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCc-eEEEECcHHHhhcccccCCCceEEEECC--------------c---
Confidence            985 78999999999999999999999999976 9999999866432  1236899999941              0   


Q ss_pred             CccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEe-cCC--CCceEEEEE
Q 017476          293 EPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVS-DFA--GIQRFVTGF  369 (371)
Q Consensus       293 ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~-Dl~--g~~R~~~a~  369 (371)
                                   ..+..+++.+.++|+|||++++..+ ....+++.++.......||..+++.. ...  ...|.++-.
T Consensus       161 -------------~~~~~ll~~~~~~LkpgG~l~~~~g-~~~~~e~~~~~~~l~~~G~~~~~~~~~~~p~~~~~R~l~~~  226 (249)
T 3g89_A          161 -------------APLCVLSELLLPFLEVGGAAVAMKG-PRVEEELAPLPPALERLGGRLGEVLALQLPLSGEARHLVVL  226 (249)
T ss_dssp             -------------CCHHHHHHHHGGGEEEEEEEEEEEC-SCCHHHHTTHHHHHHHHTEEEEEEEEEECTTTCCEEEEEEE
T ss_pred             -------------CCHHHHHHHHHHHcCCCeEEEEEeC-CCcHHHHHHHHHHHHHcCCeEEEEEEeeCCCCCCcEEEEEE
Confidence                         0134788899999999999999884 33444443332221125676554432 222  356765543

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.77  E-value=1.5e-18  Score=151.90  Aligned_cols=134  Identities=18%  Similarity=0.208  Sum_probs=97.7

Q ss_pred             CCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC
Q 017476          167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ  246 (371)
Q Consensus       167 ~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~  246 (371)
                      |...++||.++.+.+.+.+.+ ..  ..++.+|||+|||+|.+++.+++.  +..+|+|+|+|+.+++.|++|++.+++.
T Consensus         6 p~~~~~rp~~~~~~~~~~~~l-~~--~~~~~~vLDlGcG~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~   80 (177)
T 2esr_A            6 LDGKITRPTSDKVRGAIFNMI-GP--YFNGGRVLDLFAGSGGLAIEAVSR--GMSAAVLVEKNRKAQAIIQDNIIMTKAE   80 (177)
T ss_dssp             ------------CHHHHHHHH-CS--CCCSCEEEEETCTTCHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHHHTTTCG
T ss_pred             CCCCCCCcCHHHHHHHHHHHH-Hh--hcCCCeEEEeCCCCCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence            445678999999999988887 21  235679999999999999999985  4579999999999999999999999987


Q ss_pred             CcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHH--hcccccCcE
Q 017476          247 DIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGT--ASMLKPGGF  324 (371)
Q Consensus       247 ~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a--~~~LkpgG~  324 (371)
                      ++++++++|+.+.++...++||+|++||||..                           .....+++.+  .++|+|||+
T Consensus        81 ~~~~~~~~d~~~~~~~~~~~fD~i~~~~~~~~---------------------------~~~~~~~~~l~~~~~L~~gG~  133 (177)
T 2esr_A           81 NRFTLLKMEAERAIDCLTGRFDLVFLDPPYAK---------------------------ETIVATIEALAAKNLLSEQVM  133 (177)
T ss_dssp             GGEEEECSCHHHHHHHBCSCEEEEEECCSSHH---------------------------HHHHHHHHHHHHTTCEEEEEE
T ss_pred             CceEEEECcHHHhHHhhcCCCCEEEECCCCCc---------------------------chHHHHHHHHHhCCCcCCCcE
Confidence            78999999997754434467999999999841                           0112333333  489999999


Q ss_pred             EEEEECCc
Q 017476          325 FAFETNGE  332 (371)
Q Consensus       325 lvle~~~~  332 (371)
                      +++++...
T Consensus       134 l~~~~~~~  141 (177)
T 2esr_A          134 VVCETDKT  141 (177)
T ss_dssp             EEEEEETT
T ss_pred             EEEEECCc
Confidence            99999543

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.77  E-value=1.7e-17  Score=163.95  Aligned_cols=146  Identities=23%  Similarity=0.364  Sum_probs=118.5

Q ss_pred             eeeEeeCCccc---ccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 017476          161 LVLSVEEGVFI---PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA  237 (371)
Q Consensus       161 ~~~~v~~~vli---Prp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~  237 (371)
                      +.|...+++|.   +++.++.+++.+.+.+ .. ...++.+|||+|||+|.+++.+++.   +.+|+|+|+|+.+++.|+
T Consensus       198 ~~~~~~pgvFs~~~~d~~t~~ll~~l~~~l-~~-~~~~~~~VLDlGcG~G~~~~~la~~---g~~V~gvDis~~al~~A~  272 (381)
T 3dmg_A          198 YTFHHLPGVFSAGKVDPASLLLLEALQERL-GP-EGVRGRQVLDLGAGYGALTLPLARM---GAEVVGVEDDLASVLSLQ  272 (381)
T ss_dssp             EEEEECTTCTTTTSCCHHHHHHHHHHHHHH-CT-TTTTTCEEEEETCTTSTTHHHHHHT---TCEEEEEESBHHHHHHHH
T ss_pred             EEEEeCCCceeCCCCCHHHHHHHHHHHHhh-cc-cCCCCCEEEEEeeeCCHHHHHHHHc---CCEEEEEECCHHHHHHHH
Confidence            47888999999   6788999999887765 11 1224679999999999999999985   469999999999999999


Q ss_pred             HHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhc
Q 017476          238 FNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTAS  317 (371)
Q Consensus       238 ~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~  317 (371)
                      +|+..+++.  ++++++|+.+.... .++||+|++||||.....                     ...+....+++.+.+
T Consensus       273 ~n~~~~~~~--v~~~~~D~~~~~~~-~~~fD~Ii~npp~~~~~~---------------------~~~~~~~~~l~~~~~  328 (381)
T 3dmg_A          273 KGLEANALK--AQALHSDVDEALTE-EARFDIIVTNPPFHVGGA---------------------VILDVAQAFVNVAAA  328 (381)
T ss_dssp             HHHHHTTCC--CEEEECSTTTTSCT-TCCEEEEEECCCCCTTCS---------------------SCCHHHHHHHHHHHH
T ss_pred             HHHHHcCCC--eEEEEcchhhcccc-CCCeEEEEECCchhhccc---------------------ccHHHHHHHHHHHHH
Confidence            999999875  89999999876443 478999999999964221                     123456689999999


Q ss_pred             ccccCcEEEEEECCcCcH
Q 017476          318 MLKPGGFFAFETNGEKQC  335 (371)
Q Consensus       318 ~LkpgG~lvle~~~~~q~  335 (371)
                      +|+|||.+++.++.....
T Consensus       329 ~LkpGG~l~iv~n~~l~~  346 (381)
T 3dmg_A          329 RLRPGGVFFLVSNPFLKY  346 (381)
T ss_dssp             HEEEEEEEEEEECTTSCH
T ss_pred             hcCcCcEEEEEEcCCCCh
Confidence            999999999999655433

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.76  E-value=3.3e-17  Score=145.68  Aligned_cols=144  Identities=18%  Similarity=0.207  Sum_probs=110.8

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|.++..+++.+++..+|+|+|+|+.+++.|++|+..+++.++++++++|+.+......++||+|++|+
T Consensus        22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~  101 (197)
T 3eey_A           22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNL  101 (197)
T ss_dssp             TTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEE
T ss_pred             CCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEcC
Confidence            46799999999999999999987566799999999999999999999999877899999998665433457899999999


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC-----CcCcHHHHHHHHhccccCC
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN-----GEKQCKFLKNYLENDSACS  349 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~-----~~~q~~~v~~~l~~~~~~g  349 (371)
                      ||.+..+....                 ...+....+++.+.+.|+|||++++...     +....+.+.+++......+
T Consensus       102 ~~~~~~~~~~~-----------------~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  164 (197)
T 3eey_A          102 GYLPSGDHSIS-----------------TRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKK  164 (197)
T ss_dssp             SBCTTSCTTCB-----------------CCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTT
T ss_pred             CcccCcccccc-----------------cCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCc
Confidence            99764432111                 1123455789999999999999998862     1124566777777654456


Q ss_pred             ceeEEE
Q 017476          350 FCNVSI  355 (371)
Q Consensus       350 f~~v~~  355 (371)
                      |..+.+
T Consensus       165 ~~v~~~  170 (197)
T 3eey_A          165 FIVQRT  170 (197)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            755443

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.74  E-value=1.6e-18  Score=176.25  Aligned_cols=159  Identities=16%  Similarity=0.160  Sum_probs=113.1

Q ss_pred             HHHHHHHhhcCCceeeEe----------ecccccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCc
Q 017476          136 YGLWKQRIEKRKPFQYLV----------GCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTG  205 (371)
Q Consensus       136 ~~~~~~r~~~~~P~~yi~----------g~~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~G  205 (371)
                      +..+..++.+++|++|++          +...|++..+. ++.++.+++.++.+.+.+++.+ .   ..++.+|||+|||
T Consensus        94 ~~~ll~~~~~~~pl~~i~~~r~~~~~~~~~~~~y~~~~~-~~~~L~d~~~t~~~~~~il~~l-~---~~~~~~VLDiGcG  168 (480)
T 3b3j_A           94 FYNILKTCRGHTLERSVFSERTEESSAVQYFQFYGYLSQ-QQNMMQDYVRTGTYQRAILQNH-T---DFKDKIVLDVGCG  168 (480)
T ss_dssp             --------------------------CCEEEEGGGCSCH-HHHHHHHHHHHHHHHHHHHHTG-G---GTTTCEEEEESCS
T ss_pred             HHHHHHHHHcCCcHHHHHhhhhhhhchhhHHHHHhhhcc-chhhhcChHhHHHHHHHHHHhh-h---hcCCCEEEEecCc
Confidence            344456667889999999          66777777665 7888999999999999888766 2   2246799999999


Q ss_pred             ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCC-CCCCCCccc
Q 017476          206 SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP-YIPSDDISG  284 (371)
Q Consensus       206 sG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPP-Yi~~~~~~~  284 (371)
                      +|.+++.+++.  +..+|+|+|+|+ +++.|++|++.+++.++++++++|+.+. . ..++||+|++|+| |+...    
T Consensus       169 tG~la~~la~~--~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~-~-~~~~fD~Ivs~~~~~~~~~----  239 (480)
T 3b3j_A          169 SGILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEV-S-LPEQVDIIISEPMGYMLFN----  239 (480)
T ss_dssp             TTHHHHHHHHT--TCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTC-C-CSSCEEEEECCCCHHHHTC----
T ss_pred             ccHHHHHHHHc--CCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhC-c-cCCCeEEEEEeCchHhcCc----
Confidence            99999999884  567999999998 9999999999999988899999999773 1 2368999999988 32110    


Q ss_pred             chhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          285 LQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       285 l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                                           +.....+..+.++|+|||.+++++
T Consensus       240 ---------------------e~~~~~l~~~~~~LkpgG~li~~~  263 (480)
T 3b3j_A          240 ---------------------ERMLESYLHAKKYLKPSGNMFPTI  263 (480)
T ss_dssp             ---------------------HHHHHHHHHGGGGEEEEEEEESCE
T ss_pred             ---------------------HHHHHHHHHHHHhcCCCCEEEEEe
Confidence                                 112345667889999999999765

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.74  E-value=1e-16  Score=143.54  Aligned_cols=163  Identities=22%  Similarity=0.267  Sum_probs=122.4

Q ss_pred             eeeEeeCCcccc---cchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 017476          161 LVLSVEEGVFIP---RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA  237 (371)
Q Consensus       161 ~~~~v~~~vliP---rp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~  237 (371)
                      ..+.+++++.+.   .+.+..+.+.+...+      .++.+|||+|||+|.++..+++.  +..+|+|+|+|+.+++.|+
T Consensus        29 ~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~------~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~  100 (205)
T 3grz_A           29 EIIRLDPGLAFGTGNHQTTQLAMLGIERAM------VKPLTVADVGTGSGILAIAAHKL--GAKSVLATDISDESMTAAE  100 (205)
T ss_dssp             EEEEESCC-----CCHHHHHHHHHHHHHHC------SSCCEEEEETCTTSHHHHHHHHT--TCSEEEEEESCHHHHHHHH
T ss_pred             eeEEecCCcccCCCCCccHHHHHHHHHHhc------cCCCEEEEECCCCCHHHHHHHHC--CCCEEEEEECCHHHHHHHH
Confidence            345566665332   244455555554433      24579999999999999998874  5679999999999999999


Q ss_pred             HHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhc
Q 017476          238 FNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTAS  317 (371)
Q Consensus       238 ~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~  317 (371)
                      +|+..+++.+ ++++++|+.+..   .++||+|++|+|+                             ..+..+++.+.+
T Consensus       101 ~~~~~~~~~~-v~~~~~d~~~~~---~~~fD~i~~~~~~-----------------------------~~~~~~l~~~~~  147 (205)
T 3grz_A          101 ENAALNGIYD-IALQKTSLLADV---DGKFDLIVANILA-----------------------------EILLDLIPQLDS  147 (205)
T ss_dssp             HHHHHTTCCC-CEEEESSTTTTC---CSCEEEEEEESCH-----------------------------HHHHHHGGGSGG
T ss_pred             HHHHHcCCCc-eEEEeccccccC---CCCceEEEECCcH-----------------------------HHHHHHHHHHHH
Confidence            9999999877 999999997653   3689999999764                             223578889999


Q ss_pred             ccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEecCCCCceEEEE
Q 017476          318 MLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTG  368 (371)
Q Consensus       318 ~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a  368 (371)
                      .|+|||++++......+.+.+.+++++   .||..+++..+ .+...++..
T Consensus       148 ~L~~gG~l~~~~~~~~~~~~~~~~~~~---~Gf~~~~~~~~-~~w~~~~~~  194 (205)
T 3grz_A          148 HLNEDGQVIFSGIDYLQLPKIEQALAE---NSFQIDLKMRA-GRWIGLAIS  194 (205)
T ss_dssp             GEEEEEEEEEEEEEGGGHHHHHHHHHH---TTEEEEEEEEE-TTEEEEEEE
T ss_pred             hcCCCCEEEEEecCcccHHHHHHHHHH---cCCceEEeecc-CCEEEEEEe
Confidence            999999999975566788889999886   78988776653 555555543

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.74  E-value=1e-16  Score=149.55  Aligned_cols=186  Identities=22%  Similarity=0.330  Sum_probs=133.9

Q ss_pred             hHHHHHHHHHHHhhcCCcee----eEeec---ccccceeeEeeCCcccc---cchHHHHHHHHHHHhhhcCCCCCCCeEE
Q 017476          131 GLDELYGLWKQRIEKRKPFQ----YLVGC---EHWRDLVLSVEEGVFIP---RPETELMVDLVSDVLVRDNDGLRDGFWV  200 (371)
Q Consensus       131 ~~~~~~~~~~~r~~~~~P~~----yi~g~---~~f~~~~~~v~~~vliP---rp~te~lv~~~~~~~~~~~~~~~~~~VL  200 (371)
                      +.+++.+.|.+...   |+.    .+...   .....+.+.++|+..+.   .+.|..+.+.+...+      .++.+||
T Consensus        55 ~~~dw~~~~~~~~~---p~~~~~~~i~~~w~~~~~~~~~~~l~p~~~fgtg~~~tt~~~~~~l~~~~------~~~~~VL  125 (254)
T 2nxc_A           55 GDEDWLEAWRRDLK---PALAPPFVVLAPWHTWEGAEIPLVIEPGMAFGTGHHETTRLALKALARHL------RPGDKVL  125 (254)
T ss_dssp             CHHHHHHHHHHHCC---CEEETTEEEECTTCCCCSSSEEEECCCC-----CCSHHHHHHHHHHHHHC------CTTCEEE
T ss_pred             ChhHHHHHHHhhCC---CEEEecEEEeCCCCCCCCCceEEEECCCccccCCCCHHHHHHHHHHHHhc------CCCCEEE
Confidence            44778888877643   332    22221   11234567788887763   466666666655433      2457999


Q ss_pred             EECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCC
Q 017476          201 DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSD  280 (371)
Q Consensus       201 DlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~  280 (371)
                      |+|||+|.+++.+++. +  .+|+|+|+|+.+++.|++|+..+++.  ++++++|+.+.++  .++||+|++|+++    
T Consensus       126 DiGcG~G~l~~~la~~-g--~~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~~~~--~~~fD~Vv~n~~~----  194 (254)
T 2nxc_A          126 DLGTGSGVLAIAAEKL-G--GKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAALP--FGPFDLLVANLYA----  194 (254)
T ss_dssp             EETCTTSHHHHHHHHT-T--CEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHHGG--GCCEEEEEEECCH----
T ss_pred             EecCCCcHHHHHHHHh-C--CeEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhhcCc--CCCCCEEEECCcH----
Confidence            9999999999998884 2  39999999999999999999999876  8999999977543  3689999998652    


Q ss_pred             CcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEecCC
Q 017476          281 DISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFA  360 (371)
Q Consensus       281 ~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~  360 (371)
                                               +.+..++..+.++|+|||++++......+.+.+.+.+++   .||..+++..+ .
T Consensus       195 -------------------------~~~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~---~Gf~~~~~~~~-~  245 (254)
T 2nxc_A          195 -------------------------ELHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAG---AGFRPLEEAAE-G  245 (254)
T ss_dssp             -------------------------HHHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHH---TTCEEEEEEEE-T
T ss_pred             -------------------------HHHHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHH---CCCEEEEEecc-C
Confidence                                     123478888999999999999975456788899999986   78987776553 3


Q ss_pred             CCceE
Q 017476          361 GIQRF  365 (371)
Q Consensus       361 g~~R~  365 (371)
                      +...+
T Consensus       246 ~W~~l  250 (254)
T 2nxc_A          246 EWVLL  250 (254)
T ss_dssp             TEEEE
T ss_pred             CeEEE
Confidence            44333

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.74  E-value=8.1e-18  Score=151.35  Aligned_cols=142  Identities=19%  Similarity=0.191  Sum_probs=102.4

Q ss_pred             cccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 017476          157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA  236 (371)
Q Consensus       157 ~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A  236 (371)
                      .|.+..+.+.++ ...||.++.+.+.+.+.+...   .++.+|||+|||+|.+++.++..  ...+|+|+|+|+.+++.|
T Consensus        19 ~~~g~~l~~~~~-~~~rp~~~~~~~~l~~~l~~~---~~~~~vLDlGcGtG~~~~~~~~~--~~~~v~gvD~s~~~l~~a   92 (201)
T 2ift_A           19 LWRGRKLPVLNS-EGLRPTGDRVKETLFNWLMPY---IHQSECLDGFAGSGSLGFEALSR--QAKKVTFLELDKTVANQL   92 (201)
T ss_dssp             TTTTCEEECC----------CHHHHHHHHHHHHH---HTTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHH
T ss_pred             eeCCcEecCCCC-CCcCcCHHHHHHHHHHHHHHh---cCCCeEEEcCCccCHHHHHHHHc--cCCEEEEEECCHHHHHHH
Confidence            567788877665 356777778777777766211   13569999999999999987774  346999999999999999


Q ss_pred             HHHHHHcCCC-CcEEEEEcCccccccc-CCCc-eeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHH
Q 017476          237 AFNAQRYGLQ-DIIEIRQGSWFGKLKD-VEGK-LSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCN  313 (371)
Q Consensus       237 ~~n~~~~gl~-~~v~~~~gD~~~~l~~-~~~~-fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~  313 (371)
                      ++|+..+++. ++++++++|+.+.+.. ..++ ||+|++||||.. .                          .+..+++
T Consensus        93 ~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~~-~--------------------------~~~~~l~  145 (201)
T 2ift_A           93 KKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDPPFHF-N--------------------------LAEQAIS  145 (201)
T ss_dssp             HHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECCCSSS-C--------------------------HHHHHHH
T ss_pred             HHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEECCCCCC-c--------------------------cHHHHHH
Confidence            9999999984 4699999998765443 1468 999999999851 1                          1123444


Q ss_pred             HH--hcccccCcEEEEEECC
Q 017476          314 GT--ASMLKPGGFFAFETNG  331 (371)
Q Consensus       314 ~a--~~~LkpgG~lvle~~~  331 (371)
                      .+  .++|+|||.+++++..
T Consensus       146 ~~~~~~~LkpgG~l~i~~~~  165 (201)
T 2ift_A          146 LLCENNWLKPNALIYVETEK  165 (201)
T ss_dssp             HHHHTTCEEEEEEEEEEEES
T ss_pred             HHHhcCccCCCcEEEEEECC
Confidence            55  6789999999999954

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.74  E-value=8.6e-18  Score=151.31  Aligned_cols=146  Identities=16%  Similarity=0.160  Sum_probs=106.2

Q ss_pred             eeEeecccccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCC
Q 017476          150 QYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLN  229 (371)
Q Consensus       150 ~yi~g~~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis  229 (371)
                      ..+.|  .|++..+.+.++ ..+||.++.+.+.+.+.+...   .++.+|||+|||+|.+++.++..  ...+|+|+|+|
T Consensus        15 ~ii~g--~~~g~~l~~~~~-~~~rp~~~~~~~~l~~~l~~~---~~~~~vLDlgcG~G~~~~~l~~~--~~~~V~~vD~s   86 (202)
T 2fpo_A           15 RIIGG--QWRGRKLPVPDS-PGLRPTTDRVRETLFNWLAPV---IVDAQCLDCFAGSGALGLEALSR--YAAGATLIEMD   86 (202)
T ss_dssp             ECCSG--GGTTCEEECCCC-------CHHHHHHHHHHHHHH---HTTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSC
T ss_pred             EEEEE--EEcCcEecCCCC-CCCCCCHHHHHHHHHHHHHhh---cCCCeEEEeCCCcCHHHHHHHhc--CCCEEEEEECC
Confidence            34444  467888887664 456888888888887776221   13569999999999999988775  23599999999


Q ss_pred             HHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHH
Q 017476          230 PLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLL  309 (371)
Q Consensus       230 ~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~  309 (371)
                      +.+++.|++|++.+++ ++++++++|+.+.++...++||+|++||||... .                          +.
T Consensus        87 ~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~~~-~--------------------------~~  138 (202)
T 2fpo_A           87 RAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQKGTPHNIVFVDPPFRRG-L--------------------------LE  138 (202)
T ss_dssp             HHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSCCCCEEEEEECCSSSTT-T--------------------------HH
T ss_pred             HHHHHHHHHHHHHcCC-CcEEEEECCHHHHHhhcCCCCCEEEECCCCCCC-c--------------------------HH
Confidence            9999999999999998 469999999877554334689999999998521 0                          11


Q ss_pred             HHHHHH--hcccccCcEEEEEECC
Q 017476          310 HLCNGT--ASMLKPGGFFAFETNG  331 (371)
Q Consensus       310 ~il~~a--~~~LkpgG~lvle~~~  331 (371)
                      .+++.+  .++|+|||++++++..
T Consensus       139 ~~l~~l~~~~~L~pgG~l~i~~~~  162 (202)
T 2fpo_A          139 ETINLLEDNGWLADEALIYVESEV  162 (202)
T ss_dssp             HHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred             HHHHHHHhcCccCCCcEEEEEECC
Confidence            233333  3569999999999853

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.73  E-value=3.8e-18  Score=161.55  Aligned_cols=167  Identities=8%  Similarity=-0.017  Sum_probs=109.5

Q ss_pred             hcCCceeeEeecccccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEE
Q 017476          144 EKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSI  223 (371)
Q Consensus       144 ~~~~P~~yi~g~~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V  223 (371)
                      .+++|++|++|...||+..+.         +.++.+++++....    ...++.+|||+|||+|.+++.+++.  ...+|
T Consensus        41 ~~~~~~~~i~g~~~~~g~~~~---------~~~~~l~~~l~~~~----~~~~~~~vLDlG~G~G~~~~~~a~~--~~~~v  105 (281)
T 3bzb_A           41 LQCSVQVQTTQEHPLWTSHVW---------SGARALADTLCWQP----ELIAGKTVCELGAGAGLVSIVAFLA--GADQV  105 (281)
T ss_dssp             -CCEEEEECC--------------------CHHHHHHHHHHHCG----GGTTTCEEEETTCTTSHHHHHHHHT--TCSEE
T ss_pred             ccCCeEEEECCCCCCCCceee---------cHHHHHHHHHHhcc----hhcCCCeEEEecccccHHHHHHHHc--CCCEE
Confidence            567799999999999887664         68899999888754    1234679999999999999999884  34599


Q ss_pred             EEEeC-CHHHHHHHHHHH-----HHcCCC----CcEEEEEcCccccccc-----CCCceeEEEE-cCCCCCCCCcccchh
Q 017476          224 IAVDL-NPLAAAVAAFNA-----QRYGLQ----DIIEIRQGSWFGKLKD-----VEGKLSGVVS-NPPYIPSDDISGLQV  287 (371)
Q Consensus       224 ~gvDi-s~~al~~A~~n~-----~~~gl~----~~v~~~~gD~~~~l~~-----~~~~fDlIvs-NPPYi~~~~~~~l~~  287 (371)
                      +|+|+ |+.+++.|++|+     ..+++.    +++++...||.+....     ..++||+|++ |..|..         
T Consensus       106 ~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~---------  176 (281)
T 3bzb_A          106 VATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFH---------  176 (281)
T ss_dssp             EEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCG---------
T ss_pred             EEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccCh---------
Confidence            99999 899999999999     555654    4689998887654221     1468999997 655531         


Q ss_pred             hhcccCccccccCCCCcHHHHHHHHHHHhcccc---c--CcEEEEEECCcC-----cHHHHHHHHhccccCC-ceeEEE
Q 017476          288 EVGKHEPRLALDGGVDGLDYLLHLCNGTASMLK---P--GGFFAFETNGEK-----QCKFLKNYLENDSACS-FCNVSI  355 (371)
Q Consensus       288 ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~Lk---p--gG~lvle~~~~~-----q~~~v~~~l~~~~~~g-f~~v~~  355 (371)
                                        ..+..+++.+.++|+   |  ||.+++......     ....+.+.+++   .| |...++
T Consensus       177 ------------------~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~~~~~~~~~~l~~---~G~f~v~~~  234 (281)
T 3bzb_A          177 ------------------QAHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLAFFRLVNA---DGALIAEPW  234 (281)
T ss_dssp             ------------------GGHHHHHHHHHHHBCCTTTCTTCEEEEEECC--------CTHHHHHHHH---STTEEEEEE
T ss_pred             ------------------HHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccchhHHHHHHHHHh---cCCEEEEEe
Confidence                              113467888889999   9  998877654322     12344555554   78 876655

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.73  E-value=1.4e-17  Score=161.93  Aligned_cols=198  Identities=14%  Similarity=0.161  Sum_probs=134.3

Q ss_pred             hHHHHHHHHHHHhhcCCceeeEeecccccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHH
Q 017476          131 GLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIA  210 (371)
Q Consensus       131 ~~~~~~~~~~~r~~~~~P~~yi~g~~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~a  210 (371)
                      .....|+.+.++... .|.++               ...+.|+.....+...+....    ...++.+|||+|||+|.++
T Consensus        86 ~~g~~ye~~~~~~~~-~~~~~---------------g~~~TP~~i~~~~~~ll~~l~----~~~~~~~VlDp~cGsG~~l  145 (344)
T 2f8l_A           86 EIRKGLQLALLKGMK-HGIQV---------------NHQMTPDSIGFIVAYLLEKVI----QKKKNVSILDPACGTANLL  145 (344)
T ss_dssp             HHHHHHHHHHHHHTS-SSCCG---------------GGCCCCHHHHHHHHHHHHHHH----TTCSEEEEEETTCTTSHHH
T ss_pred             HHHHHHHHHHHHHhh-ccccc---------------CcCCChHHHHHHHHHHHHHhc----CCCCCCEEEeCCCCccHHH
Confidence            456677777777554 66555               123467766655555443221    1123569999999999999


Q ss_pred             HHHHHHhCCC----cEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccch
Q 017476          211 IGIARVLGSK----GSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQ  286 (371)
Q Consensus       211 l~la~~~~~~----~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~  286 (371)
                      +.+++.+...    .+++|+|+++.+++.|+.|+..+|+  ++.++++|.++...  .++||+|++||||.....    .
T Consensus       146 ~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--~~~i~~~D~l~~~~--~~~fD~Ii~NPPfg~~~~----~  217 (344)
T 2f8l_A          146 TTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLANLL--VDPVDVVISDLPVGYYPD----D  217 (344)
T ss_dssp             HHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSCCC--CCCEEEEEEECCCSEESC----H
T ss_pred             HHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC--CceEEECCCCCccc--cCCccEEEECCCCCCcCc----h
Confidence            9999876222    7899999999999999999998887  48999999987543  368999999999732111    0


Q ss_pred             hhhcccCccccccCCCCcHHHH-HHHHHHHhcccccCcEEEEEEC----CcCcHHHHHHHHhccccCCcee--EEEEecC
Q 017476          287 VEVGKHEPRLALDGGVDGLDYL-LHLCNGTASMLKPGGFFAFETN----GEKQCKFLKNYLENDSACSFCN--VSIVSDF  359 (371)
Q Consensus       287 ~ev~~~ep~~aL~gg~dGl~~~-~~il~~a~~~LkpgG~lvle~~----~~~q~~~v~~~l~~~~~~gf~~--v~~~~Dl  359 (371)
                      ....+|++.     +.+|...+ ..+++.+.++|+|||++++.++    ...+...+++++.+   .++..  |..-.++
T Consensus       218 ~~~~~~~~~-----~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~l~~---~~~~~~ii~lp~~~  289 (344)
T 2f8l_A          218 ENAKTFELC-----REEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKK---NGHIEGIIKLPETL  289 (344)
T ss_dssp             HHHTTSTTC-----CSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHH---HEEEEEEEECCGGG
T ss_pred             hhhhhcccc-----CCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHHHHHHHh---CCeEEEeeeCChhh
Confidence            111345542     23343333 3688899999999999999982    23567888888875   33433  3334455


Q ss_pred             CCCce
Q 017476          360 AGIQR  364 (371)
Q Consensus       360 ~g~~R  364 (371)
                      .+..+
T Consensus       290 F~~~~  294 (344)
T 2f8l_A          290 FKSEQ  294 (344)
T ss_dssp             SCC-C
T ss_pred             ccCCC
Confidence            55544

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.73  E-value=5.5e-17  Score=160.04  Aligned_cols=144  Identities=19%  Similarity=0.281  Sum_probs=108.8

Q ss_pred             ceeeEeeCCccccc---chHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 017476          160 DLVLSVEEGVFIPR---PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA  236 (371)
Q Consensus       160 ~~~~~v~~~vliPr---p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A  236 (371)
                      ++.+...+++|.+.   ..++.++    +.+    ....+.+|||+|||+|.+++.+++.. |+.+|+|+|+|+.+++.|
T Consensus       192 ~~~~~~~pg~Fs~~~~d~~~~~ll----~~l----~~~~~~~VLDlGcG~G~~s~~la~~~-p~~~V~gvD~s~~al~~A  262 (375)
T 4dcm_A          192 DWTIHNHANVFSRTGLDIGARFFM----QHL----PENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASS  262 (375)
T ss_dssp             TEEEEECTTCTTCSSCCHHHHHHH----HTC----CCSCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEESCHHHHHHH
T ss_pred             ceEEEeCCCcccCCcccHHHHHHH----HhC----cccCCCeEEEEeCcchHHHHHHHHHC-CCCEEEEEECcHHHHHHH
Confidence            56788899999863   2333443    333    22234799999999999999999984 788999999999999999


Q ss_pred             HHHHHHcCCCC--cEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHH
Q 017476          237 AFNAQRYGLQD--IIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNG  314 (371)
Q Consensus       237 ~~n~~~~gl~~--~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~  314 (371)
                      ++|+..+++.+  +++++.+|+.+.+.  .++||+|++||||.....+.       .              .....+++.
T Consensus       263 r~n~~~ngl~~~~~v~~~~~D~~~~~~--~~~fD~Ii~nppfh~~~~~~-------~--------------~~~~~~l~~  319 (375)
T 4dcm_A          263 RLNVETNMPEALDRCEFMINNALSGVE--PFRFNAVLCNPPFHQQHALT-------D--------------NVAWEMFHH  319 (375)
T ss_dssp             HHHHHHHCGGGGGGEEEEECSTTTTCC--TTCEEEEEECCCC--------------C--------------CHHHHHHHH
T ss_pred             HHHHHHcCCCcCceEEEEechhhccCC--CCCeeEEEECCCcccCcccC-------H--------------HHHHHHHHH
Confidence            99999998764  58899999988654  36899999999997432211       0              112368899


Q ss_pred             HhcccccCcEEEEEECCcCcH
Q 017476          315 TASMLKPGGFFAFETNGEKQC  335 (371)
Q Consensus       315 a~~~LkpgG~lvle~~~~~q~  335 (371)
                      +.++|+|||.+++..+.....
T Consensus       320 ~~~~LkpgG~l~iv~n~~~~~  340 (375)
T 4dcm_A          320 ARRCLKINGELYIVANRHLDY  340 (375)
T ss_dssp             HHHHEEEEEEEEEEEETTSCH
T ss_pred             HHHhCCCCcEEEEEEECCcCH
Confidence            999999999999988654433

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.73  E-value=2.2e-16  Score=138.96  Aligned_cols=141  Identities=17%  Similarity=0.144  Sum_probs=100.3

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|.+++.+++.   +.+|+|+|+|+.+++.|++|++.+++ ++++++++|..+......++||+|++|+
T Consensus        22 ~~~~vLDiGcG~G~~~~~la~~---~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l~~~~~~~fD~v~~~~   97 (185)
T 3mti_A           22 DESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENLDHYVREPIRAAIFNL   97 (185)
T ss_dssp             TTCEEEESCCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence            4679999999999999999985   58999999999999999999999998 5699999777542222247899999999


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC-----cCcHHHHHHHHhccccCC
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG-----EKQCKFLKNYLENDSACS  349 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~-----~~q~~~v~~~l~~~~~~g  349 (371)
                      +|.+..+....     .            ..+....+++.+.+.|||||.+++....     ....+.+.+++......+
T Consensus        98 ~~~~~~~~~~~-----~------------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~  160 (185)
T 3mti_A           98 GYLPSADKSVI-----T------------KPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRV  160 (185)
T ss_dssp             C----------------------------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTT
T ss_pred             CCCCCcchhcc-----c------------ChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCce
Confidence            99764321100     0            0233456788999999999999987631     223456667776654466


Q ss_pred             ceeEEEE
Q 017476          350 FCNVSIV  356 (371)
Q Consensus       350 f~~v~~~  356 (371)
                      |..++..
T Consensus       161 ~~~~~~~  167 (185)
T 3mti_A          161 FTAMLYQ  167 (185)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEeh
Confidence            7655543

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.73  E-value=9.7e-18  Score=144.94  Aligned_cols=142  Identities=21%  Similarity=0.271  Sum_probs=108.4

Q ss_pred             cccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 017476          157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA  236 (371)
Q Consensus       157 ~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A  236 (371)
                      .|++..+.+.++   +++.++.+.+.+.+.+...  ..++.+|||+|||+|.++..+++.   +.+|+|+|+|+.+++.|
T Consensus         8 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~---~~~v~~vD~~~~~~~~a   79 (171)
T 1ws6_A            8 KARGVALKVPAS---ARPSPVRLRKALFDYLRLR--YPRRGRFLDPFAGSGAVGLEAASE---GWEAVLVEKDPEAVRLL   79 (171)
T ss_dssp             GGTTCEECCCTT---CCCCCHHHHHHHHHHHHHH--CTTCCEEEEETCSSCHHHHHHHHT---TCEEEEECCCHHHHHHH
T ss_pred             ccCCeEecCCCC---CCCCHHHHHHHHHHHHHhh--ccCCCeEEEeCCCcCHHHHHHHHC---CCeEEEEeCCHHHHHHH
Confidence            467889999998   7888888888888776221  114569999999999999999986   23599999999999999


Q ss_pred             HHHHHHcCCCCcEEEEEcCcccccccC---CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHH
Q 017476          237 AFNAQRYGLQDIIEIRQGSWFGKLKDV---EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCN  313 (371)
Q Consensus       237 ~~n~~~~gl~~~v~~~~gD~~~~l~~~---~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~  313 (371)
                      ++|+..+++  +++++++|+.+.+...   .++||+|++||||.  ....                      +.+..+.+
T Consensus        80 ~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~--~~~~----------------------~~~~~~~~  133 (171)
T 1ws6_A           80 KENVRRTGL--GARVVALPVEVFLPEAKAQGERFTVAFMAPPYA--MDLA----------------------ALFGELLA  133 (171)
T ss_dssp             HHHHHHHTC--CCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT--SCTT----------------------HHHHHHHH
T ss_pred             HHHHHHcCC--ceEEEeccHHHHHHhhhccCCceEEEEECCCCc--hhHH----------------------HHHHHHHh
Confidence            999999887  5999999997643321   24799999999996  1110                      11222322


Q ss_pred             HHhcccccCcEEEEEECCcCc
Q 017476          314 GTASMLKPGGFFAFETNGEKQ  334 (371)
Q Consensus       314 ~a~~~LkpgG~lvle~~~~~q  334 (371)
                        .++|+|||.+++++.....
T Consensus       134 --~~~L~~gG~~~~~~~~~~~  152 (171)
T 1ws6_A          134 --SGLVEAGGLYVLQHPKDLY  152 (171)
T ss_dssp             --HTCEEEEEEEEEEEETTSC
T ss_pred             --hcccCCCcEEEEEeCCccC
Confidence              5999999999999965443

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.73  E-value=3e-17  Score=158.64  Aligned_cols=196  Identities=14%  Similarity=0.148  Sum_probs=136.9

Q ss_pred             cCCceeeEeec-ccccceeeEeeCCcccccch----HHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCC
Q 017476          145 KRKPFQYLVGC-EHWRDLVLSVEEGVFIPRPE----TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS  219 (371)
Q Consensus       145 ~~~P~~yi~g~-~~f~~~~~~v~~~vliPrp~----te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~  219 (371)
                      ..-|+|||.+. ..+++..+.++..+.+|+++    +|.++...+...      ..+.+|||+|||+|.++..+++.. +
T Consensus        67 ~~s~~q~i~v~~~~~~g~~l~ldg~~~~~~~de~~y~e~l~~~~l~~~------~~~~~VLdiG~G~G~~~~~l~~~~-~  139 (321)
T 2pt6_A           67 TKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMTVS------KEPKNVLVVGGGDGGIIRELCKYK-S  139 (321)
T ss_dssp             EECSSCEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHHHS------SSCCEEEEEECTTCHHHHHHTTCT-T
T ss_pred             EECCCceEEEEEcCCCcEEEEECCEeeeCcccchHHHHHHHHHHHhcC------CCCCEEEEEcCCccHHHHHHHHcC-C
Confidence            45799999886 46778999999999999987    444443322111      245799999999999999999853 6


Q ss_pred             CcEEEEEeCCHHHHHHHHHHHHH--cCC-CCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccc
Q 017476          220 KGSIIAVDLNPLAAAVAAFNAQR--YGL-QDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRL  296 (371)
Q Consensus       220 ~~~V~gvDis~~al~~A~~n~~~--~gl-~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~  296 (371)
                      ..+|+++|+|+.+++.|++|+..  .++ .++++++.+|+.+.+....++||+|++|++-..              .|..
T Consensus       140 ~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~d~~~p~--------------~~~~  205 (321)
T 2pt6_A          140 VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDSSDPI--------------GPAE  205 (321)
T ss_dssp             CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEECCCSS--------------SGGG
T ss_pred             CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEECCcCCC--------------Ccch
Confidence            78999999999999999999865  233 357999999987755433578999999975210              0111


Q ss_pred             cccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC-cCcHHHHHHHHhccccCCceeEEEEec----C-CCCceEEEEEe
Q 017476          297 ALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG-EKQCKFLKNYLENDSACSFCNVSIVSD----F-AGIQRFVTGFR  370 (371)
Q Consensus       297 aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~-~~q~~~v~~~l~~~~~~gf~~v~~~~D----l-~g~~R~~~a~~  370 (371)
                      .+.        -..+++.+.+.|+|||+++++... ..+.+.+..+++.. ...|..++.+..    + .|..-|++|.+
T Consensus       206 ~l~--------~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l-~~~F~~v~~~~~~vp~~~~g~w~f~~as~  276 (321)
T 2pt6_A          206 TLF--------NQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYA-KKLFKKVEYANISIPTYPCGCIGILCCSK  276 (321)
T ss_dssp             GGS--------SHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHH-HTTCSEEEEEEEECTTSGGGEEEEEEEES
T ss_pred             hhh--------HHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHH-HHHCCCeEEEEEEeccccCceEEEEEeeC
Confidence            110        147888899999999999998743 23545555554433 234777766542    2 24555666654

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.73  E-value=1.6e-17  Score=161.37  Aligned_cols=201  Identities=15%  Similarity=0.180  Sum_probs=136.1

Q ss_pred             hcCCceeeE-eecccccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcE
Q 017476          144 EKRKPFQYL-VGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGS  222 (371)
Q Consensus       144 ~~~~P~~yi-~g~~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~  222 (371)
                      ..+.|+||| +++..+++..+.++..+.+++++.....+.+......  ....+.+|||+|||+|.++..+++.. +..+
T Consensus        70 ~~~s~~q~I~v~~~~~~g~~l~ldg~~~~~~~de~~y~e~L~~l~l~--~~~~~~~VLdIG~G~G~~a~~la~~~-~~~~  146 (334)
T 1xj5_A           70 QGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLC--SIPNPKKVLVIGGGDGGVLREVARHA-SIEQ  146 (334)
T ss_dssp             EEECSSCEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHT--TSSCCCEEEEETCSSSHHHHHHTTCT-TCCE
T ss_pred             EeecCCeEEEEEEcCCCCeEEEECCEeecCcCcchHHHHHHHHHHHh--hCCCCCEEEEECCCccHHHHHHHHcC-CCCE
Confidence            346899999 9999999999999999999987632222222221101  12246799999999999999999863 6789


Q ss_pred             EEEEeCCHHHHHHHHHHHHHc--CC-CCcEEEEEcCcccccccC-CCceeEEEEcCCCCCCCCcccchhhhcccCccccc
Q 017476          223 IIAVDLNPLAAAVAAFNAQRY--GL-QDIIEIRQGSWFGKLKDV-EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLAL  298 (371)
Q Consensus       223 V~gvDis~~al~~A~~n~~~~--gl-~~~v~~~~gD~~~~l~~~-~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL  298 (371)
                      |++||+|+.+++.|++|+...  ++ ..+++++.+|+.+.+... .++||+|++|++-... .     .           
T Consensus       147 V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi~d~~~p~~-~-----~-----------  209 (334)
T 1xj5_A          147 IDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSSDPIG-P-----A-----------  209 (334)
T ss_dssp             EEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEECCCCTTS-G-----G-----------
T ss_pred             EEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEEECCCCccC-c-----c-----------
Confidence            999999999999999998763  44 347999999987754332 3689999999752110 0     0           


Q ss_pred             cCCCCcHHHHHHHHHHHhcccccCcEEEEEEC-CcCcHHHHHHHHhccccCCcee-E----EEEecC-CCCceEEEEEe
Q 017476          299 DGGVDGLDYLLHLCNGTASMLKPGGFFAFETN-GEKQCKFLKNYLENDSACSFCN-V----SIVSDF-AGIQRFVTGFR  370 (371)
Q Consensus       299 ~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~-~~~q~~~v~~~l~~~~~~gf~~-v----~~~~Dl-~g~~R~~~a~~  370 (371)
                          ++ .....+++.+.+.|+|||++++..+ .+.+...+...++.. ...|.. +    ...+++ .|..-|++|.+
T Consensus       210 ----~~-l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l-~~~F~~~~~~~~~~vP~y~~g~~gf~~as~  282 (334)
T 1xj5_A          210 ----KE-LFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNC-REIFKGSVNYAWTSVPTYPSGVIGFMLCST  282 (334)
T ss_dssp             ----GG-GGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHH-HHHCSSCEEEEEEECTTSGGGEEEEEEEEC
T ss_pred             ----hh-hhHHHHHHHHHHhcCCCcEEEEecCCccccHHHHHHHHHHH-HHhCccccceEEEeCCcccCCceEEEEccc
Confidence                00 1134788899999999999999742 344544444443322 122442 2    223344 25666777654

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.72  E-value=3.3e-17  Score=148.75  Aligned_cols=165  Identities=15%  Similarity=0.166  Sum_probs=120.3

Q ss_pred             eCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC
Q 017476          166 EEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGL  245 (371)
Q Consensus       166 ~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl  245 (371)
                      .+.+++++|++ ...++.. .. .    ..+.+|||+|||+|.+++.+|+.. ++.+|+|+|+|+.+++.|++|+..+++
T Consensus        16 ~~~~~~~~~~~-~~~~~~~-~f-~----~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~giD~s~~~l~~a~~~~~~~~~   87 (213)
T 2fca_A           16 NADIAISNPAD-YKGKWNT-VF-G----NDNPIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDSEA   87 (213)
T ss_dssp             TTTTBCSCGGG-GTTCHHH-HH-T----SCCCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHSCC
T ss_pred             CccEEecCccc-cCCCHHH-Hc-C----CCCceEEEEecCCCHHHHHHHHHC-CCCCEEEEEechHHHHHHHHHHHHcCC
Confidence            45667777765 2233322 22 1    135689999999999999999985 789999999999999999999999998


Q ss_pred             CCcEEEEEcCcccccc-cCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcE
Q 017476          246 QDIIEIRQGSWFGKLK-DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGF  324 (371)
Q Consensus       246 ~~~v~~~~gD~~~~l~-~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~  324 (371)
                      .+ ++++++|+.+... ...+.||.|++|.|-.....         .|+.+..         ....+++.+.++|+|||.
T Consensus        88 ~n-v~~~~~d~~~l~~~~~~~~~d~v~~~~~~p~~~~---------~~~~~rl---------~~~~~l~~~~~~LkpgG~  148 (213)
T 2fca_A           88 QN-VKLLNIDADTLTDVFEPGEVKRVYLNFSDPWPKK---------RHEKRRL---------TYSHFLKKYEEVMGKGGS  148 (213)
T ss_dssp             SS-EEEECCCGGGHHHHCCTTSCCEEEEESCCCCCSG---------GGGGGST---------TSHHHHHHHHHHHTTSCE
T ss_pred             CC-EEEEeCCHHHHHhhcCcCCcCEEEEECCCCCcCc---------ccccccc---------CcHHHHHHHHHHcCCCCE
Confidence            64 9999999876211 12468999999865321111         1111110         124788899999999999


Q ss_pred             EEEEECCcCcHHHHHHHHhccccCCceeEEEEecCC
Q 017476          325 FAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFA  360 (371)
Q Consensus       325 lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~  360 (371)
                      +++.+....+.+.+.+.+.+   .||..+.+..|+.
T Consensus       149 l~~~td~~~~~~~~~~~~~~---~g~~~~~~~~d~~  181 (213)
T 2fca_A          149 IHFKTDNRGLFEYSLKSFSE---YGLLLTYVSLDLH  181 (213)
T ss_dssp             EEEEESCHHHHHHHHHHHHH---HTCEEEEEESSGG
T ss_pred             EEEEeCCHHHHHHHHHHHHH---CCCcccccccccc
Confidence            99999766677788888875   5688888777764

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.72  E-value=1e-17  Score=155.18  Aligned_cols=117  Identities=22%  Similarity=0.172  Sum_probs=95.0

Q ss_pred             CCCeEEEECCcccHHHHHHHHH--hCCCcEEEEEeCCHHHHHHHHHHHHHc---CCCCc---------------------
Q 017476          195 RDGFWVDLGTGSGAIAIGIARV--LGSKGSIIAVDLNPLAAAVAAFNAQRY---GLQDI---------------------  248 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~--~~~~~~V~gvDis~~al~~A~~n~~~~---gl~~~---------------------  248 (371)
                      .+.+|||+|||+|.+++.+++.  . +..+|+|+|+|+.+++.|++|+..+   ++.++                     
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~-~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRR-SLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ  129 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGG-GEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhcc-CCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhh
Confidence            4569999999999999999987  4 5679999999999999999998876   55333                     


Q ss_pred             ----EE-------------EEEcCccccccc----CCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHH
Q 017476          249 ----IE-------------IRQGSWFGKLKD----VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDY  307 (371)
Q Consensus       249 ----v~-------------~~~gD~~~~l~~----~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~  307 (371)
                          ++             ++++|+++....    ..++||+|++||||+.......                 ++|.+.
T Consensus       130 ~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~-----------------~~~~~~  192 (250)
T 1o9g_A          130 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEG-----------------QVPGQP  192 (250)
T ss_dssp             HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSS-----------------CCCHHH
T ss_pred             hhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccc-----------------cccccH
Confidence                66             999999876521    2248999999999986543211                 256888


Q ss_pred             HHHHHHHHhcccccCcEEEEEE
Q 017476          308 LLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       308 ~~~il~~a~~~LkpgG~lvle~  329 (371)
                      +..+++.+.++|+|||++++..
T Consensus       193 ~~~~l~~~~~~LkpgG~l~~~~  214 (250)
T 1o9g_A          193 VAGLLRSLASALPAHAVIAVTD  214 (250)
T ss_dssp             HHHHHHHHHHHSCTTCEEEEEE
T ss_pred             HHHHHHHHHHhcCCCcEEEEeC
Confidence            9999999999999999999944

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.71  E-value=2.8e-16  Score=148.49  Aligned_cols=164  Identities=15%  Similarity=0.123  Sum_probs=117.9

Q ss_pred             cceeeEeeC--CcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 017476          159 RDLVLSVEE--GVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA  236 (371)
Q Consensus       159 ~~~~~~v~~--~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A  236 (371)
                      .+..|.++.  ..|.++...+  ...+.+.+      .++.+|||+|||+|.+++.+++.. .. +|+|+|+|+.+++.|
T Consensus        95 ~g~~f~~d~~~~~f~~~~~~~--~~~l~~~~------~~~~~VLDlgcG~G~~~~~la~~~-~~-~V~~vD~s~~~~~~a  164 (278)
T 2frn_A           95 NGIKYKLDVAKIMFSPANVKE--RVRMAKVA------KPDELVVDMFAGIGHLSLPIAVYG-KA-KVIAIEKDPYTFKFL  164 (278)
T ss_dssp             TTEEEEEETTTSCCCGGGHHH--HHHHHHHC------CTTCEEEETTCTTTTTHHHHHHHT-CC-EEEEECCCHHHHHHH
T ss_pred             CCEEEEEEccceeEcCCcHHH--HHHHHHhC------CCCCEEEEecccCCHHHHHHHHhC-CC-EEEEEECCHHHHHHH
Confidence            467777764  3455652222  12222222      136799999999999999999973 33 899999999999999


Q ss_pred             HHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHh
Q 017476          237 AFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTA  316 (371)
Q Consensus       237 ~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~  316 (371)
                      ++|++.+++.++++++++|+.+...  .++||+|++|||+..                              ..+++.+.
T Consensus       165 ~~n~~~n~~~~~v~~~~~D~~~~~~--~~~fD~Vi~~~p~~~------------------------------~~~l~~~~  212 (278)
T 2frn_A          165 VENIHLNKVEDRMSAYNMDNRDFPG--ENIADRILMGYVVRT------------------------------HEFIPKAL  212 (278)
T ss_dssp             HHHHHHTTCTTTEEEECSCTTTCCC--CSCEEEEEECCCSSG------------------------------GGGHHHHH
T ss_pred             HHHHHHcCCCceEEEEECCHHHhcc--cCCccEEEECCchhH------------------------------HHHHHHHH
Confidence            9999999998889999999987655  478999999999632                              14667778


Q ss_pred             cccccCcEEEEEECC------cCcHHHHHHHHhccccCCceeEE-----EEecCCCCceEEE
Q 017476          317 SMLKPGGFFAFETNG------EKQCKFLKNYLENDSACSFCNVS-----IVSDFAGIQRFVT  367 (371)
Q Consensus       317 ~~LkpgG~lvle~~~------~~q~~~v~~~l~~~~~~gf~~v~-----~~~Dl~g~~R~~~  367 (371)
                      +.|+|||++++....      ....+.+.+.+++   .||.-..     +..-..+.+.+++
T Consensus       213 ~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~---~G~~~~~~~~~~v~~~~p~~~h~~~  271 (278)
T 2frn_A          213 SIAKDGAIIHYHNTVPEKLMPREPFETFKRITKE---YGYDVEKLNELKIKRYAPGVWHVVL  271 (278)
T ss_dssp             HHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHH---TTCEEEEEEEEEEEEETTTEEEEEE
T ss_pred             HHCCCCeEEEEEEeeccccccccHHHHHHHHHHH---cCCeeEEeeeEEEEecCCCceEEEE
Confidence            899999999996643      2455677777775   5674332     2333445555544

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.71  E-value=1.2e-16  Score=155.09  Aligned_cols=163  Identities=15%  Similarity=0.067  Sum_probs=119.9

Q ss_pred             cceeeEeeCCccccc---chHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 017476          159 RDLVLSVEEGVFIPR---PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAV  235 (371)
Q Consensus       159 ~~~~~~v~~~vliPr---p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~  235 (371)
                      .+..|.+++..+...   ++++...+++.+.+ ..  ..++.+|||+|||+|.+++.+++.   +.+|+|||+|+.+++.
T Consensus       117 ~g~~f~v~~~~~~~tg~f~dq~~~~~~l~~~~-~~--~~~~~~VLDlgcGtG~~sl~la~~---ga~V~~VD~s~~al~~  190 (332)
T 2igt_A          117 LGVEFLGRFTAFRHVGVFPEQIVHWEWLKNAV-ET--ADRPLKVLNLFGYTGVASLVAAAA---GAEVTHVDASKKAIGW  190 (332)
T ss_dssp             TTEEEEEECCSSSCCSCCGGGHHHHHHHHHHH-HH--SSSCCEEEEETCTTCHHHHHHHHT---TCEEEEECSCHHHHHH
T ss_pred             CCEEEEEecCccccceechHHHHHHHHHHHHH-Hh--cCCCCcEEEcccccCHHHHHHHHc---CCEEEEEECCHHHHHH
Confidence            567788887655542   56777666666665 21  123569999999999999999984   3499999999999999


Q ss_pred             HHHHHHHcCCCC-cEEEEEcCcccccccC---CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHH
Q 017476          236 AAFNAQRYGLQD-IIEIRQGSWFGKLKDV---EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHL  311 (371)
Q Consensus       236 A~~n~~~~gl~~-~v~~~~gD~~~~l~~~---~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~i  311 (371)
                      |++|++.+++.+ +++++++|+++.+...   .++||+|++||||.......    ++            .+..+.+..+
T Consensus       191 a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~----~~------------~~~~~~~~~l  254 (332)
T 2igt_A          191 AKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHG----EV------------WQLFDHLPLM  254 (332)
T ss_dssp             HHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTC----CE------------EEHHHHHHHH
T ss_pred             HHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEECCccccCCchH----HH------------HHHHHHHHHH
Confidence            999999999876 5999999998755321   36899999999986432110    01            0135677889


Q ss_pred             HHHHhcccccCcEEEEEECCcC--cHHHHHHHHh
Q 017476          312 CNGTASMLKPGGFFAFETNGEK--QCKFLKNYLE  343 (371)
Q Consensus       312 l~~a~~~LkpgG~lvle~~~~~--q~~~v~~~l~  343 (371)
                      ++.+.++|+|||++++++....  ..+.+.++++
T Consensus       255 l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~  288 (332)
T 2igt_A          255 LDICREILSPKALGLVLTAYSIRASFYSMHELMR  288 (332)
T ss_dssp             HHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHH
T ss_pred             HHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHH
Confidence            9999999999999888774322  2345555555

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.71  E-value=2.5e-16  Score=153.63  Aligned_cols=158  Identities=22%  Similarity=0.176  Sum_probs=117.6

Q ss_pred             cchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q 017476          173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIR  252 (371)
Q Consensus       173 rp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~  252 (371)
                      .+..+.+...++...    ...++.+|||+|||+|.+++.++...++..+|+|+|+|+.+++.|++|++..|+. ++++.
T Consensus       185 a~l~~~la~~l~~~~----~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~  259 (354)
T 3tma_A          185 GSLTPVLAQALLRLA----DARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFL  259 (354)
T ss_dssp             CSCCHHHHHHHHHHT----TCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEE
T ss_pred             CCcCHHHHHHHHHHh----CCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEE
Confidence            345566777666654    3335679999999999999999997546689999999999999999999999998 79999


Q ss_pred             EcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCc
Q 017476          253 QGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGE  332 (371)
Q Consensus       253 ~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~  332 (371)
                      ++|+.+... ..+.||+|++||||.....     .             ..+..+.|..+++.+.+.|+|||.+++.+.. 
T Consensus       260 ~~D~~~~~~-~~~~~D~Ii~npPyg~r~~-----~-------------~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~-  319 (354)
T 3tma_A          260 RADARHLPR-FFPEVDRILANPPHGLRLG-----R-------------KEGLFHLYWDFLRGALALLPPGGRVALLTLR-  319 (354)
T ss_dssp             ECCGGGGGG-TCCCCSEEEECCCSCC----------------------CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC-
T ss_pred             eCChhhCcc-ccCCCCEEEECCCCcCccC-----C-------------cccHHHHHHHHHHHHHHhcCCCcEEEEEeCC-
Confidence            999977432 2356899999999963211     0             0112456788999999999999999999943 


Q ss_pred             CcHHHHHHHHhccccCCceeEEEEecCCC
Q 017476          333 KQCKFLKNYLENDSACSFCNVSIVSDFAG  361 (371)
Q Consensus       333 ~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g  361 (371)
                        .+.+.++++    .||...+..+-++|
T Consensus       320 --~~~~~~~~~----~g~~~~~~~~l~~g  342 (354)
T 3tma_A          320 --PALLKRALP----PGFALRHARVVEQG  342 (354)
T ss_dssp             --HHHHHHHCC----TTEEEEEEEECCBT
T ss_pred             --HHHHHHHhh----cCcEEEEEEEEEeC
Confidence              233444433    46777666665555

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.71  E-value=1.8e-16  Score=146.75  Aligned_cols=129  Identities=25%  Similarity=0.384  Sum_probs=109.9

Q ss_pred             CCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEE
Q 017476          193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS  272 (371)
Q Consensus       193 ~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvs  272 (371)
                      ..++.+|||+|||+|.++..+++.+++..+|+|+|+|+.+++.|++|++.+++.++++++++|+.+.+.  .++||+|++
T Consensus        91 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~D~v~~  168 (255)
T 3mb5_A           91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIE--EENVDHVIL  168 (255)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCC--CCSEEEEEE
T ss_pred             CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccC--CCCcCEEEE
Confidence            345779999999999999999998667899999999999999999999999998889999999987654  368999999


Q ss_pred             cCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCC--c
Q 017476          273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACS--F  350 (371)
Q Consensus       273 NPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~g--f  350 (371)
                      |+|..                               ..+++.+.+.|+|||.+++......+.+.+.+.+++   .|  |
T Consensus       169 ~~~~~-------------------------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~---~g~~f  214 (255)
T 3mb5_A          169 DLPQP-------------------------------ERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLRE---FKDYF  214 (255)
T ss_dssp             CSSCG-------------------------------GGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHH---TGGGB
T ss_pred             CCCCH-------------------------------HHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHH---cCCCc
Confidence            98732                               046778889999999999998777788888888886   66  8


Q ss_pred             eeEEEEe
Q 017476          351 CNVSIVS  357 (371)
Q Consensus       351 ~~v~~~~  357 (371)
                      ..+++..
T Consensus       215 ~~~~~~e  221 (255)
T 3mb5_A          215 MKPRTIN  221 (255)
T ss_dssp             SCCEEEC
T ss_pred             cccEEEE
Confidence            7776654

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.71  E-value=5.7e-16  Score=138.71  Aligned_cols=125  Identities=18%  Similarity=0.211  Sum_probs=104.4

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      .++.+|||+|||+|.+++.+++.. +..+|+|+|+|+.+++.|++|+..+++ ++++++++|+.+.+... ++||+|++|
T Consensus        39 ~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~-~~~D~i~~~  115 (204)
T 3e05_A           39 QDDLVMWDIGAGSASVSIEASNLM-PNGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPEGLDDL-PDPDRVFIG  115 (204)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHC-TTSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTTTCTTS-CCCSEEEES
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhhhhhcC-CCCCEEEEC
Confidence            356799999999999999999984 778999999999999999999999998 46999999997765542 679999998


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeE
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNV  353 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v  353 (371)
                      .++.                             .+..+++.+.+.|+|||++++......+.+.+.+++++   .|| ++
T Consensus       116 ~~~~-----------------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~---~g~-~~  162 (204)
T 3e05_A          116 GSGG-----------------------------MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLED---HGY-MV  162 (204)
T ss_dssp             CCTT-----------------------------CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHH---TTC-EE
T ss_pred             CCCc-----------------------------CHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHH---CCC-ce
Confidence            6642                             13378889999999999999998666677788888886   677 54


Q ss_pred             E
Q 017476          354 S  354 (371)
Q Consensus       354 ~  354 (371)
                      +
T Consensus       163 ~  163 (204)
T 3e05_A          163 E  163 (204)
T ss_dssp             E
T ss_pred             e
Confidence            3

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.71  E-value=3.7e-16  Score=154.52  Aligned_cols=157  Identities=12%  Similarity=0.049  Sum_probs=114.2

Q ss_pred             cceeeEeeCC-----cccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHH
Q 017476          159 RDLVLSVEEG-----VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAA  233 (371)
Q Consensus       159 ~~~~~~v~~~-----vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al  233 (371)
                      .++.|.+++.     .|++.  +.....++.+.+      .++.+|||+|||+|.+++.+|+.  ...+|+|||+|+.++
T Consensus       179 ~g~~f~v~~~~~~~t~ff~~--~~~~~~~~~~~~------~~~~~VLDl~cGtG~~sl~la~~--ga~~V~~vD~s~~al  248 (385)
T 2b78_A          179 NGISYNVFLNDGLMTGIFLD--QRQVRNELINGS------AAGKTVLNLFSYTAAFSVAAAMG--GAMATTSVDLAKRSR  248 (385)
T ss_dssp             TTEEEEECSSSSSCCSSCGG--GHHHHHHHHHTT------TBTCEEEEETCTTTHHHHHHHHT--TBSEEEEEESCTTHH
T ss_pred             CCEEEEEeccccccCCcCCc--HHHHHHHHHHHh------cCCCeEEEEeeccCHHHHHHHHC--CCCEEEEEECCHHHH
Confidence            5789999987     66532  222222222221      13569999999999999999984  335899999999999


Q ss_pred             HHHHHHHHHcCCCC-cEEEEEcCcccccccC---CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHH
Q 017476          234 AVAAFNAQRYGLQD-IIEIRQGSWFGKLKDV---EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLL  309 (371)
Q Consensus       234 ~~A~~n~~~~gl~~-~v~~~~gD~~~~l~~~---~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~  309 (371)
                      +.|++|++.+++.+ +++++++|+++.++..   .++||+|++||||.....-                 ...+.+..+.
T Consensus       249 ~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~DPP~~~~~~~-----------------~~~~~~~~~~  311 (385)
T 2b78_A          249 ALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARNKK-----------------EVFSVSKDYH  311 (385)
T ss_dssp             HHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC----------------------CCCCHHHHHH
T ss_pred             HHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEECCCCCCCChh-----------------hHHHHHHHHH
Confidence            99999999999975 7999999998755421   3589999999999632110                 0123467888


Q ss_pred             HHHHHHhcccccCcEEEEEECCcCc-HHHHHHHH
Q 017476          310 HLCNGTASMLKPGGFFAFETNGEKQ-CKFLKNYL  342 (371)
Q Consensus       310 ~il~~a~~~LkpgG~lvle~~~~~q-~~~v~~~l  342 (371)
                      .++..+.+.|+|||+++++++.... .+...+++
T Consensus       312 ~ll~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~i  345 (385)
T 2b78_A          312 KLIRQGLEILSENGLIIASTNAANMTVSQFKKQI  345 (385)
T ss_dssp             HHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHH
T ss_pred             HHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHH
Confidence            9999999999999999999964432 23344443

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.71  E-value=3.7e-17  Score=149.35  Aligned_cols=143  Identities=16%  Similarity=0.234  Sum_probs=109.6

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc--cCCCceeEEEE
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK--DVEGKLSGVVS  272 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~--~~~~~fDlIvs  272 (371)
                      .+.+|||+|||+|.+++.+|+.. ++.+|+|||+|+.+++.|++|+..+++.+ ++++++|+.+.++  ...+.||.|++
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~-p~~~v~giD~s~~~l~~a~~~~~~~~l~n-v~~~~~Da~~~l~~~~~~~~~d~v~~  111 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDR-PEQDFLGIEVHSPGVGACLASAHEEGLSN-LRVMCHDAVEVLHKMIPDNSLRMVQL  111 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHTTCSS-EEEECSCHHHHHHHHSCTTCEEEEEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHC-CCCeEEEEEecHHHHHHHHHHHHHhCCCc-EEEEECCHHHHHHHHcCCCChheEEE
Confidence            35699999999999999999985 88899999999999999999999999876 9999999876433  12579999999


Q ss_pred             c--CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCc
Q 017476          273 N--PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSF  350 (371)
Q Consensus       273 N--PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf  350 (371)
                      |  +||.....          +..+.  .        ...+++.+.+.|||||.+++.++.....+.+.+.+.+.  .+|
T Consensus       112 ~~~~p~~~~~~----------~~rr~--~--------~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~~--~~~  169 (218)
T 3dxy_A          112 FFPDPWHKARH----------NKRRI--V--------QVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSSI--DGY  169 (218)
T ss_dssp             ESCCCCCSGGG----------GGGSS--C--------SHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTS--TTE
T ss_pred             eCCCCccchhh----------hhhhh--h--------hHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHhC--CCc
Confidence            9  66643211          00000  0        12588889999999999999996655677788888753  567


Q ss_pred             eeEEEEecCCC
Q 017476          351 CNVSIVSDFAG  361 (371)
Q Consensus       351 ~~v~~~~Dl~g  361 (371)
                      ..+....|+.+
T Consensus       170 ~~~~~~~~~~~  180 (218)
T 3dxy_A          170 KNLSESNDYVP  180 (218)
T ss_dssp             EECCTTSSCBC
T ss_pred             ccccCcCccCC
Confidence            76655445544

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.71  E-value=7.6e-17  Score=153.76  Aligned_cols=149  Identities=16%  Similarity=0.083  Sum_probs=121.0

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|.+++.++....++.+|+|+|+|+.+++.|++|+...++.++++++++|+.+.. . .++||+|++|.
T Consensus       118 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~-~~~fD~v~~~~  195 (305)
T 3ocj_A          118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLD-T-REGYDLLTSNG  195 (305)
T ss_dssp             TTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCC-C-CSCEEEEECCS
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCC-c-cCCeEEEEECC
Confidence            467999999999999999963224788999999999999999999999998888999999997743 2 27899999987


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC-----------------------
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG-----------------------  331 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~-----------------------  331 (371)
                      ++....+                       ......+++.+.+.|+|||++++....                       
T Consensus       196 ~~~~~~~-----------------------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~  252 (305)
T 3ocj_A          196 LNIYEPD-----------------------DARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQL  252 (305)
T ss_dssp             SGGGCCC-----------------------HHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHH
T ss_pred             hhhhcCC-----------------------HHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhh
Confidence            6542111                       233446889999999999999987621                       


Q ss_pred             ---------------cCcHHHHHHHHhccccCCceeEEEEecCCCCceEEEEEeC
Q 017476          332 ---------------EKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFRQ  371 (371)
Q Consensus       332 ---------------~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~~~  371 (371)
                                     ....+++.+++++   .||..+++..+..+..++++++|+
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~---aGF~~v~~~~~~~~~~~~v~a~Kp  304 (305)
T 3ocj_A          253 QQLVFTRLIQPRWNALRTHAQTRAQLEE---AGFTDLRFEDDRARLFPTVIARKP  304 (305)
T ss_dssp             HHHHHHHTTCCSCCCCCCHHHHHHHHHH---TTCEEEEEECCTTSSSCEEEEECC
T ss_pred             hhhHHHHHHhhhhhccCCHHHHHHHHHH---CCCEEEEEEcccCceeeEEEEecC
Confidence                           0246788888886   789999999999999999999875

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.70  E-value=4.5e-16  Score=146.73  Aligned_cols=131  Identities=14%  Similarity=0.063  Sum_probs=105.3

Q ss_pred             cceeeEeeCCc--ccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 017476          159 RDLVLSVEEGV--FIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA  236 (371)
Q Consensus       159 ~~~~~~v~~~v--liPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A  236 (371)
                      .+..|.++++.  +.++..++.+..  ...      ..++.+|||+|||+|.+++.+|+.. +..+|+|+|+|+.+++.|
T Consensus        89 ~g~~f~~~~~~~f~~~~~~~e~~~~--~~~------~~~~~~VLDlgcG~G~~s~~la~~~-~~~~V~~vD~s~~av~~a  159 (272)
T 3a27_A           89 YGCLFKLDVAKIMWSQGNIEERKRM--AFI------SNENEVVVDMFAGIGYFTIPLAKYS-KPKLVYAIEKNPTAYHYL  159 (272)
T ss_dssp             TTEEEEEETTTSCCCGGGHHHHHHH--HTS------CCTTCEEEETTCTTTTTHHHHHHHT-CCSEEEEEECCHHHHHHH
T ss_pred             CCEEEEEechhEEECCCchHHHHHH--HHh------cCCCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHH
Confidence            57889999987  457766666542  211      2346799999999999999999985 567999999999999999


Q ss_pred             HHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHh
Q 017476          237 AFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTA  316 (371)
Q Consensus       237 ~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~  316 (371)
                      ++|++.+++.+ +.++++|+.+. +. .++||+|++|||+.                              +..++..+.
T Consensus       160 ~~n~~~n~l~~-~~~~~~d~~~~-~~-~~~~D~Vi~d~p~~------------------------------~~~~l~~~~  206 (272)
T 3a27_A          160 CENIKLNKLNN-VIPILADNRDV-EL-KDVADRVIMGYVHK------------------------------THKFLDKTF  206 (272)
T ss_dssp             HHHHHHTTCSS-EEEEESCGGGC-CC-TTCEEEEEECCCSS------------------------------GGGGHHHHH
T ss_pred             HHHHHHcCCCC-EEEEECChHHc-Cc-cCCceEEEECCccc------------------------------HHHHHHHHH
Confidence            99999999875 88999999876 43 46899999999971                              014566777


Q ss_pred             cccccCcEEEEEECC
Q 017476          317 SMLKPGGFFAFETNG  331 (371)
Q Consensus       317 ~~LkpgG~lvle~~~  331 (371)
                      +.|+|||++++.+..
T Consensus       207 ~~LkpgG~l~~s~~~  221 (272)
T 3a27_A          207 EFLKDRGVIHYHETV  221 (272)
T ss_dssp             HHEEEEEEEEEEEEE
T ss_pred             HHcCCCCEEEEEEcC
Confidence            899999999998753

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.70  E-value=3.7e-16  Score=143.54  Aligned_cols=125  Identities=18%  Similarity=0.251  Sum_probs=105.9

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|+|+|||+|.+++.+++. ++..+|+|+|+++.+++.|++|++.+|+.++++++.+|+++.++. ..+||+|+.. 
T Consensus        15 ~g~~VlDIGtGsG~l~i~la~~-~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~-~~~~D~Ivia-   91 (225)
T 3kr9_A           15 QGAILLDVGSDHAYLPIELVER-GQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE-TDQVSVITIA-   91 (225)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-GGCCCEEEEE-
T ss_pred             CCCEEEEeCCCcHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc-CcCCCEEEEc-
Confidence            4569999999999999999996 477899999999999999999999999998999999999887764 1269988851 


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEE
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVS  354 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~  354 (371)
                                                |. |-+.+..+++.+...|+++|++++...  .+.+.++++|.+   .||.-++
T Consensus        92 --------------------------G~-Gg~~i~~Il~~~~~~L~~~~~lVlq~~--~~~~~vr~~L~~---~Gf~i~~  139 (225)
T 3kr9_A           92 --------------------------GM-GGRLIARILEEGLGKLANVERLILQPN--NREDDLRIWLQD---HGFQIVA  139 (225)
T ss_dssp             --------------------------EE-CHHHHHHHHHHTGGGCTTCCEEEEEES--SCHHHHHHHHHH---TTEEEEE
T ss_pred             --------------------------CC-ChHHHHHHHHHHHHHhCCCCEEEEECC--CCHHHHHHHHHH---CCCEEEE
Confidence                                      11 235577999999999999999999884  688999999986   6786543

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.68  E-value=8.2e-16  Score=141.61  Aligned_cols=153  Identities=14%  Similarity=0.023  Sum_probs=109.4

Q ss_pred             cccchHHHHHHHHHHHhhhcC--CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCc
Q 017476          171 IPRPETELMVDLVSDVLVRDN--DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDI  248 (371)
Q Consensus       171 iPrp~te~lv~~~~~~~~~~~--~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~  248 (371)
                      .+++.++.+.+.+.+.+....  ...++.+|||+|||+|.+++.++... ++.+|+|+|+|+.+++.|++|++.+++++ 
T Consensus        44 ~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-  121 (240)
T 1xdz_A           44 SITEKKEVYLKHFYDSITAAFYVDFNQVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEALQLEN-  121 (240)
T ss_dssp             SCCSHHHHHHHTHHHHHGGGGTSCGGGCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSS-
T ss_pred             ccCCHHHHHHHHHHHHHhHHHhcccCCCCEEEEecCCCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCC-
Confidence            355667777766665442110  11246799999999999999999864 77899999999999999999999999875 


Q ss_pred             EEEEEcCcccccc--cCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEE
Q 017476          249 IEIRQGSWFGKLK--DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFA  326 (371)
Q Consensus       249 v~~~~gD~~~~l~--~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lv  326 (371)
                      ++++++|+.+...  ...++||+|+++..                              ..+..+++.+.++|+|||+++
T Consensus       122 v~~~~~d~~~~~~~~~~~~~fD~V~~~~~------------------------------~~~~~~l~~~~~~LkpgG~l~  171 (240)
T 1xdz_A          122 TTFCHDRAETFGQRKDVRESYDIVTARAV------------------------------ARLSVLSELCLPLVKKNGLFV  171 (240)
T ss_dssp             EEEEESCHHHHTTCTTTTTCEEEEEEECC------------------------------SCHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEeccHHHhcccccccCCccEEEEecc------------------------------CCHHHHHHHHHHhcCCCCEEE
Confidence            9999999865321  11468999999530                              113478899999999999999


Q ss_pred             EEECCcCcHHHHHHHHhccccCCceeEEEE
Q 017476          327 FETNGEKQCKFLKNYLENDSACSFCNVSIV  356 (371)
Q Consensus       327 le~~~~~q~~~v~~~l~~~~~~gf~~v~~~  356 (371)
                      +.. +....+++..+.+.....||..+++.
T Consensus       172 ~~~-g~~~~~~~~~~~~~l~~~g~~~~~~~  200 (240)
T 1xdz_A          172 ALK-AASAEEELNAGKKAITTLGGELENIH  200 (240)
T ss_dssp             EEE-CC-CHHHHHHHHHHHHHTTEEEEEEE
T ss_pred             EEe-CCCchHHHHHHHHHHHHcCCeEeEEE
Confidence            987 44444444433332223678665543

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.68  E-value=2.4e-16  Score=155.47  Aligned_cols=160  Identities=20%  Similarity=0.258  Sum_probs=116.0

Q ss_pred             cccccchHHHHHHHHHHHhhhc---------CCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 017476          169 VFIPRPETELMVDLVSDVLVRD---------NDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN  239 (371)
Q Consensus       169 vliPrp~te~lv~~~~~~~~~~---------~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n  239 (371)
                      ..+|+++++.+.+.....+..-         ....++.+|||+|||+|.++..+++.++++.+|+|+|+|+.+++.|++|
T Consensus        48 ~~~p~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~  127 (383)
T 4fsd_A           48 AAVPESHRKILADIADEVLEKFYGCGSTLPADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKY  127 (383)
T ss_dssp             --CCHHHHHHHHTSCHHHHHHCCSCCCCCSCGGGGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHhhHHHHHHhcCCCCccccccCCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence            3788999888877433322100         0023567999999999999999999876778999999999999999999


Q ss_pred             HHHc-----C-C-CCcEEEEEcCccccc-----ccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHH
Q 017476          240 AQRY-----G-L-QDIIEIRQGSWFGKL-----KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDY  307 (371)
Q Consensus       240 ~~~~-----g-l-~~~v~~~~gD~~~~l-----~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~  307 (371)
                      ++.+     | + ..+++++++|+.+..     +...++||+|++|..+.              |.+            .
T Consensus       128 ~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~~~~~fD~V~~~~~l~--------------~~~------------d  181 (383)
T 4fsd_A          128 VEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCN--------------LST------------N  181 (383)
T ss_dssp             HHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCCCTTCEEEEEEESCGG--------------GCS------------C
T ss_pred             HHHhhhhcccccCCCceEEEEccHHHhhhcccCCCCCCCEEEEEEccchh--------------cCC------------C
Confidence            8766     3 2 246999999997631     22247899999975432              111            1


Q ss_pred             HHHHHHHHhcccccCcEEEEEECCc----------------------CcHHHHHHHHhccccCCceeEEEEe
Q 017476          308 LLHLCNGTASMLKPGGFFAFETNGE----------------------KQCKFLKNYLENDSACSFCNVSIVS  357 (371)
Q Consensus       308 ~~~il~~a~~~LkpgG~lvle~~~~----------------------~q~~~v~~~l~~~~~~gf~~v~~~~  357 (371)
                      ...+++++.+.|||||++++.....                      ...+.+.+++++   .||..+++..
T Consensus       182 ~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~---aGF~~v~~~~  250 (383)
T 4fsd_A          182 KLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAE---AGFRDVRLVS  250 (383)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHHH---TTCCCEEEEE
T ss_pred             HHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHHH---CCCceEEEEe
Confidence            3478899999999999999964221                      233778888886   7898887654

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.68  E-value=1.8e-15  Score=139.59  Aligned_cols=148  Identities=20%  Similarity=0.128  Sum_probs=113.6

Q ss_pred             ccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEE
Q 017476          172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEI  251 (371)
Q Consensus       172 Prp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~  251 (371)
                      .+|.+...++.+++.+    ...++.+|||+|||+|.++..+++.+  +.+|+|+|+|+.+++.|++++...++.+++++
T Consensus        17 ~~~~~~~~~~~l~~~~----~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~   90 (256)
T 1nkv_A           17 HNPFTEEKYATLGRVL----RMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHF   90 (256)
T ss_dssp             SSSCCHHHHHHHHHHT----CCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEE
T ss_pred             cCCCCHHHHHHHHHhc----CCCCCCEEEEECCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEE
Confidence            4566667777777665    33456799999999999999999975  56999999999999999999999998878999


Q ss_pred             EEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC
Q 017476          252 RQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG  331 (371)
Q Consensus       252 ~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~  331 (371)
                      +++|+.+...  .++||+|+++...              .|-+            ....+++++.+.|||||++++....
T Consensus        91 ~~~d~~~~~~--~~~fD~V~~~~~~--------------~~~~------------~~~~~l~~~~r~LkpgG~l~~~~~~  142 (256)
T 1nkv_A           91 IHNDAAGYVA--NEKCDVAACVGAT--------------WIAG------------GFAGAEELLAQSLKPGGIMLIGEPY  142 (256)
T ss_dssp             EESCCTTCCC--SSCEEEEEEESCG--------------GGTS------------SSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred             EECChHhCCc--CCCCCEEEECCCh--------------HhcC------------CHHHHHHHHHHHcCCCeEEEEecCc
Confidence            9999976432  5789999994321              1111            1237888999999999999996521


Q ss_pred             c---------------------CcHHHHHHHHhccccCCceeEEEE
Q 017476          332 E---------------------KQCKFLKNYLENDSACSFCNVSIV  356 (371)
Q Consensus       332 ~---------------------~q~~~v~~~l~~~~~~gf~~v~~~  356 (371)
                      .                     ...+.+.+++++   .||..+++.
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---aGf~~~~~~  185 (256)
T 1nkv_A          143 WRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDD---LGYDVVEMV  185 (256)
T ss_dssp             ETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHT---TTBCCCEEE
T ss_pred             ccCCCChHHHHHHHhcccccccCCHHHHHHHHHH---CCCeeEEEE
Confidence            1                     123567788875   789887754

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.67  E-value=5e-16  Score=139.07  Aligned_cols=150  Identities=21%  Similarity=0.234  Sum_probs=114.7

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcC
Q 017476          176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGS  255 (371)
Q Consensus       176 te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD  255 (371)
                      ...+.+.+.+.+    .. .+.+|||+|||+|.++..+++.  ++.+|+|+|+|+.+++.|++++...++.++++++++|
T Consensus        29 ~~~~~~~~~~~~----~~-~~~~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d  101 (219)
T 3dlc_A           29 YPIIAENIINRF----GI-TAGTCIDIGSGPGALSIALAKQ--SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGD  101 (219)
T ss_dssp             HHHHHHHHHHHH----CC-CEEEEEEETCTTSHHHHHHHHH--SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECB
T ss_pred             cHHHHHHHHHhc----CC-CCCEEEEECCCCCHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcC
Confidence            345566666655    22 2339999999999999999997  5789999999999999999999999988789999999


Q ss_pred             cccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC----
Q 017476          256 WFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG----  331 (371)
Q Consensus       256 ~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~----  331 (371)
                      +.+. +...++||+|++|..+...                          .....+++.+.+.|+|||.+++....    
T Consensus       102 ~~~~-~~~~~~~D~v~~~~~l~~~--------------------------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~  154 (219)
T 3dlc_A          102 VHNI-PIEDNYADLIVSRGSVFFW--------------------------EDVATAFREIYRILKSGGKTYIGGGFGNKE  154 (219)
T ss_dssp             TTBC-SSCTTCEEEEEEESCGGGC--------------------------SCHHHHHHHHHHHEEEEEEEEEEECCSSHH
T ss_pred             HHHC-CCCcccccEEEECchHhhc--------------------------cCHHHHHHHHHHhCCCCCEEEEEeccCcHH
Confidence            9762 2334789999997543211                          11336888999999999999997421    


Q ss_pred             -------------------------cCcHHHHHHHHhccccCCceeEEEEecCCCC
Q 017476          332 -------------------------EKQCKFLKNYLENDSACSFCNVSIVSDFAGI  362 (371)
Q Consensus       332 -------------------------~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~  362 (371)
                                               ....+.+.+++++   .||..+++..+..|.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---aGf~~v~~~~~~~~~  207 (219)
T 3dlc_A          155 LRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDE---IGISSYEIILGDEGF  207 (219)
T ss_dssp             HHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHH---HTCSSEEEEEETTEE
T ss_pred             HHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHH---cCCCeEEEEecCCce
Confidence                                     1123667777875   789999999887664

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.67  E-value=1.9e-15  Score=141.78  Aligned_cols=107  Identities=21%  Similarity=0.220  Sum_probs=86.3

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      ++.+|||+|||+|.+++.+++.+. ++.+|+|||+|+.|++.|++++...+...+++++++|+.+ ++.  +.||+|++|
T Consensus        70 ~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~-~~~--~~~d~v~~~  146 (261)
T 4gek_A           70 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRD-IAI--ENASMVVLN  146 (261)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTT-CCC--CSEEEEEEE
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccc-ccc--cccccceee
Confidence            467999999999999999998753 4679999999999999999999998888889999999865 332  579999996


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE  328 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle  328 (371)
                      --      +        .|-+          ......+++++++.|||||.+++.
T Consensus       147 ~~------l--------~~~~----------~~~~~~~l~~i~~~LkpGG~lii~  177 (261)
T 4gek_A          147 FT------L--------QFLE----------PSERQALLDKIYQGLNPGGALVLS  177 (261)
T ss_dssp             SC------G--------GGSC----------HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ee------e--------eecC----------chhHhHHHHHHHHHcCCCcEEEEE
Confidence            21      1        1211          122346889999999999999884

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.67  E-value=1.1e-15  Score=133.07  Aligned_cols=130  Identities=18%  Similarity=0.131  Sum_probs=103.6

Q ss_pred             HHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccc
Q 017476          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG  258 (371)
Q Consensus       179 lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~  258 (371)
                      +...+++.+    ...++.+|||+|||+|.++..+++.+ ++.+|+|+|+|+.+++.|++|+..+++.+++ ++++|..+
T Consensus        13 ~~~~~~~~~----~~~~~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~   86 (178)
T 3hm2_A           13 VRALAISAL----APKPHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPR   86 (178)
T ss_dssp             HHHHHHHHH----CCCTTEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTG
T ss_pred             HHHHHHHHh----cccCCCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHh
Confidence            344444444    23356699999999999999999975 7889999999999999999999999988678 89999877


Q ss_pred             ccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHH
Q 017476          259 KLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFL  338 (371)
Q Consensus       259 ~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v  338 (371)
                      .++...++||+|+++.++..                              ..+++.+.+.|+|||++++..........+
T Consensus        87 ~~~~~~~~~D~i~~~~~~~~------------------------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~  136 (178)
T 3hm2_A           87 AFDDVPDNPDVIFIGGGLTA------------------------------PGVFAAAWKRLPVGGRLVANAVTVESEQML  136 (178)
T ss_dssp             GGGGCCSCCSEEEECC-TTC------------------------------TTHHHHHHHTCCTTCEEEEEECSHHHHHHH
T ss_pred             hhhccCCCCCEEEECCcccH------------------------------HHHHHHHHHhcCCCCEEEEEeeccccHHHH
Confidence            66654478999999766421                              157788889999999999988655666777


Q ss_pred             HHHHhc
Q 017476          339 KNYLEN  344 (371)
Q Consensus       339 ~~~l~~  344 (371)
                      .+++++
T Consensus       137 ~~~~~~  142 (178)
T 3hm2_A          137 WALRKQ  142 (178)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            788776

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.67  E-value=1.2e-15  Score=140.39  Aligned_cols=139  Identities=16%  Similarity=0.212  Sum_probs=109.8

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|+|+|||+|++++.+++. ++..+|+|+|+++.+++.|++|++.+|+.++++++++|.++.+.. .++||+|+.  
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~-~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~-~~~~D~Ivi--   96 (230)
T 3lec_A           21 KGARLLDVGSDHAYLPIFLLQM-GYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEE-ADNIDTITI--   96 (230)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHT-TCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-GGCCCEEEE--
T ss_pred             CCCEEEEECCchHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcccc-ccccCEEEE--
Confidence            4569999999999999999996 467799999999999999999999999999999999999987653 237998874  


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEE
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVS  354 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~  354 (371)
                              .                 |- |-+.+..+++.+...|+++|++++.-+  ...+.+++++.+   .||.-++
T Consensus        97 --------a-----------------Gm-Gg~lI~~IL~~~~~~l~~~~~lIlqp~--~~~~~lr~~L~~---~Gf~i~~  145 (230)
T 3lec_A           97 --------C-----------------GM-GGRLIADILNNDIDKLQHVKTLVLQPN--NREDDLRKWLAA---NDFEIVA  145 (230)
T ss_dssp             --------E-----------------EE-CHHHHHHHHHHTGGGGTTCCEEEEEES--SCHHHHHHHHHH---TTEEEEE
T ss_pred             --------e-----------------CC-chHHHHHHHHHHHHHhCcCCEEEEECC--CChHHHHHHHHH---CCCEEEE
Confidence                    0                 11 225677899999999999999999884  468899999996   6786543


Q ss_pred             --EEecCCCCceEEEE
Q 017476          355 --IVSDFAGIQRFVTG  368 (371)
Q Consensus       355 --~~~Dl~g~~R~~~a  368 (371)
                        +..+-...-.++.+
T Consensus       146 E~lv~e~~~~Yeii~~  161 (230)
T 3lec_A          146 EDILTENDKRYEILVV  161 (230)
T ss_dssp             EEEEEC--CEEEEEEE
T ss_pred             EEEEEECCEEEEEEEE
Confidence              33444434444444

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.67  E-value=1.3e-15  Score=139.89  Aligned_cols=153  Identities=19%  Similarity=0.180  Sum_probs=118.3

Q ss_pred             CCcccccchHHHHHHHHHHHh------------hhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHH
Q 017476          167 EGVFIPRPETELMVDLVSDVL------------VRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAA  234 (371)
Q Consensus       167 ~~vliPrp~te~lv~~~~~~~------------~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~  234 (371)
                      +.+++|+|+++.+.+.+....            .......++.+|||+|||+|.++..+++.   ..+|+++|+++.+++
T Consensus        51 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~  127 (248)
T 2yvl_A           51 NGFEVYRPTLEEIILLGFERKTQIIYPKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYK  127 (248)
T ss_dssp             TTEEEECCCHHHHHHHTSCCSSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHH
T ss_pred             EEEEEeCCCHHHHHHhcCcCCCCcccchhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHH
Confidence            677889999888775433211            01112335679999999999999999996   579999999999999


Q ss_pred             HHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHH
Q 017476          235 VAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNG  314 (371)
Q Consensus       235 ~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~  314 (371)
                      .|++|...+++.++++++.+|+.+.... .+.||+|++|+|..                               ..+++.
T Consensus       128 ~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~v~~~~~~~-------------------------------~~~l~~  175 (248)
T 2yvl_A          128 TAQKNLKKFNLGKNVKFFNVDFKDAEVP-EGIFHAAFVDVREP-------------------------------WHYLEK  175 (248)
T ss_dssp             HHHHHHHHTTCCTTEEEECSCTTTSCCC-TTCBSEEEECSSCG-------------------------------GGGHHH
T ss_pred             HHHHHHHHcCCCCcEEEEEcChhhcccC-CCcccEEEECCcCH-------------------------------HHHHHH
Confidence            9999999999867799999999875411 36899999988721                               035677


Q ss_pred             HhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEec
Q 017476          315 TASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSD  358 (371)
Q Consensus       315 a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~D  358 (371)
                      +.+.|+|||.+++.++...+...+.+.+++   . |..+++...
T Consensus       176 ~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~---~-f~~~~~~~~  215 (248)
T 2yvl_A          176 VHKSLMEGAPVGFLLPTANQVIKLLESIEN---Y-FGNLEVVEI  215 (248)
T ss_dssp             HHHHBCTTCEEEEEESSHHHHHHHHHHSTT---T-EEEEEEEEE
T ss_pred             HHHHcCCCCEEEEEeCCHHHHHHHHHHHHh---h-CCcceEEEe
Confidence            789999999999999666677777777764   5 887766544

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.67  E-value=1.5e-15  Score=137.93  Aligned_cols=147  Identities=18%  Similarity=0.172  Sum_probs=109.3

Q ss_pred             cchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q 017476          173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIR  252 (371)
Q Consensus       173 rp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~  252 (371)
                      .+++..++..+....       ++.+|||+|||+|..++.+++.++++.+|+++|+++.+++.|++|++.+++.++++++
T Consensus        43 ~~~~~~~l~~l~~~~-------~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~  115 (221)
T 3u81_A           43 GDAKGQIMDAVIREY-------SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTIL  115 (221)
T ss_dssp             CHHHHHHHHHHHHHH-------CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEE
T ss_pred             CHHHHHHHHHHHHhc-------CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEE
Confidence            355555665555443       3569999999999999999997655789999999999999999999999998889999


Q ss_pred             EcCcccccccCC-----CceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEE
Q 017476          253 QGSWFGKLKDVE-----GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF  327 (371)
Q Consensus       253 ~gD~~~~l~~~~-----~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvl  327 (371)
                      ++|+.+.++...     ++||+|+++.+..                          .......+++.+ ++|+|||++++
T Consensus       116 ~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~--------------------------~~~~~~~~~~~~-~~LkpgG~lv~  168 (221)
T 3u81_A          116 NGASQDLIPQLKKKYDVDTLDMVFLDHWKD--------------------------RYLPDTLLLEKC-GLLRKGTVLLA  168 (221)
T ss_dssp             ESCHHHHGGGTTTTSCCCCCSEEEECSCGG--------------------------GHHHHHHHHHHT-TCCCTTCEEEE
T ss_pred             ECCHHHHHHHHHHhcCCCceEEEEEcCCcc--------------------------cchHHHHHHHhc-cccCCCeEEEE
Confidence            999876554433     6899999964310                          022233566666 99999999999


Q ss_pred             EECCcCcHHHHHHHHhccccCCceeEEE
Q 017476          328 ETNGEKQCKFLKNYLENDSACSFCNVSI  355 (371)
Q Consensus       328 e~~~~~q~~~v~~~l~~~~~~gf~~v~~  355 (371)
                      ..........+.+.+++.  .+|....+
T Consensus       169 ~~~~~~~~~~~~~~l~~~--~~~~~~~~  194 (221)
T 3u81_A          169 DNVIVPGTPDFLAYVRGS--SSFECTHY  194 (221)
T ss_dssp             SCCCCCCCHHHHHHHHHC--TTEEEEEE
T ss_pred             eCCCCcchHHHHHHHhhC--CCceEEEc
Confidence            764444446677777763  55655433

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.67  E-value=3e-15  Score=134.80  Aligned_cols=145  Identities=14%  Similarity=0.085  Sum_probs=113.2

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      .++.+|||+|||+|.++..+++..++..+|+|+|+|+.+++.|++++...+++ +++++.+|+.+. ....++||+|+++
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~-~~~~~~fD~v~~~  113 (219)
T 3dh0_A           36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKI-PLPDNTVDFIFMA  113 (219)
T ss_dssp             CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBTTBC-SSCSSCEEEEEEE
T ss_pred             CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEecccccC-CCCCCCeeEEEee
Confidence            34679999999999999999998656789999999999999999999999887 599999999663 2234789999996


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC------------cCcHHHHHHH
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG------------EKQCKFLKNY  341 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~------------~~q~~~v~~~  341 (371)
                      -.+.              |-+            ....+++.+.+.|+|||++++....            ....+.+.++
T Consensus       114 ~~l~--------------~~~------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (219)
T 3dh0_A          114 FTFH--------------ELS------------EPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLI  167 (219)
T ss_dssp             SCGG--------------GCS------------SHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHH
T ss_pred             hhhh--------------hcC------------CHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHH
Confidence            4321              111            1347888999999999999996521            1235788888


Q ss_pred             HhccccCCceeEEEEecCCCCceEEEEEe
Q 017476          342 LENDSACSFCNVSIVSDFAGIQRFVTGFR  370 (371)
Q Consensus       342 l~~~~~~gf~~v~~~~Dl~g~~R~~~a~~  370 (371)
                      +++   .||..+++ .+..+...+++++|
T Consensus       168 l~~---~Gf~~~~~-~~~~~~~~~~~~~k  192 (219)
T 3dh0_A          168 LED---AGIRVGRV-VEVGKYCFGVYAMI  192 (219)
T ss_dssp             HHH---TTCEEEEE-EEETTTEEEEEEEC
T ss_pred             HHH---CCCEEEEE-EeeCCceEEEEEEe
Confidence            886   78987777 44666777777765

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.67  E-value=1.4e-15  Score=133.24  Aligned_cols=140  Identities=22%  Similarity=0.254  Sum_probs=112.6

Q ss_pred             cccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 017476          171 IPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIE  250 (371)
Q Consensus       171 iPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~  250 (371)
                      +|++..+.+.+.+++.+    ...++.+|||+|||+|.++..+++..   .+|+|+|+|+.+++.|++|+..+++.++++
T Consensus        13 ~~~~~~~~~~~~~~~~~----~~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~   85 (192)
T 1l3i_A           13 VPGPTAMEVRCLIMCLA----EPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVT   85 (192)
T ss_dssp             SCCCCCHHHHHHHHHHH----CCCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEE
T ss_pred             CCCCChHHHHHHHHHhc----CCCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceE
Confidence            46666777777777766    33456799999999999999999862   799999999999999999999999866799


Q ss_pred             EEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC
Q 017476          251 IRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN  330 (371)
Q Consensus       251 ~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~  330 (371)
                      ++++|+.+.++.. ++||+|++++++.                             .+..+++.+.+.|+|||.+++...
T Consensus        86 ~~~~d~~~~~~~~-~~~D~v~~~~~~~-----------------------------~~~~~l~~~~~~l~~gG~l~~~~~  135 (192)
T 1l3i_A           86 LMEGDAPEALCKI-PDIDIAVVGGSGG-----------------------------ELQEILRIIKDKLKPGGRIIVTAI  135 (192)
T ss_dssp             EEESCHHHHHTTS-CCEEEEEESCCTT-----------------------------CHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EEecCHHHhcccC-CCCCEEEECCchH-----------------------------HHHHHHHHHHHhcCCCcEEEEEec
Confidence            9999987644432 5899999986641                             023688888999999999999886


Q ss_pred             CcCcHHHHHHHHhccccCCc
Q 017476          331 GEKQCKFLKNYLENDSACSF  350 (371)
Q Consensus       331 ~~~q~~~v~~~l~~~~~~gf  350 (371)
                      .......+.+++++   .||
T Consensus       136 ~~~~~~~~~~~l~~---~g~  152 (192)
T 1l3i_A          136 LLETKFEAMECLRD---LGF  152 (192)
T ss_dssp             BHHHHHHHHHHHHH---TTC
T ss_pred             CcchHHHHHHHHHH---CCC
Confidence            55666777888875   567

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.66  E-value=1.7e-15  Score=143.43  Aligned_cols=163  Identities=16%  Similarity=0.193  Sum_probs=117.3

Q ss_pred             ceeeEee--CCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 017476          160 DLVLSVE--EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA  237 (371)
Q Consensus       160 ~~~~~v~--~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~  237 (371)
                      |..|.++  ...|.|+..+|..  .+.+.+      .++.+|||+|||+|.+++.+|+.  ...+|+|+|+|+.+++.++
T Consensus        96 G~~~~~D~~k~~f~~~~~~er~--ri~~~~------~~g~~VlD~~aG~G~~~i~~a~~--g~~~V~avD~np~a~~~~~  165 (278)
T 3k6r_A           96 GIKYKLDVAKIMFSPANVKERV--RMAKVA------KPDELVVDMFAGIGHLSLPIAVY--GKAKVIAIEKDPYTFKFLV  165 (278)
T ss_dssp             TEEEEEETTTSCCCGGGHHHHH--HHHHHC------CTTCEEEETTCTTTTTTHHHHHH--TCCEEEEECCCHHHHHHHH
T ss_pred             CEEEEEeccceEEcCCcHHHHH--HHHHhc------CCCCEEEEecCcCcHHHHHHHHh--cCCeEEEEECCHHHHHHHH
Confidence            4455544  4467788777652  233333      24679999999999999999986  4579999999999999999


Q ss_pred             HHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhc
Q 017476          238 FNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTAS  317 (371)
Q Consensus       238 ~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~  317 (371)
                      +|++.|++.++++++++|..+...  .+.||.|++|||+...                              .++..+.+
T Consensus       166 ~N~~~N~v~~~v~~~~~D~~~~~~--~~~~D~Vi~~~p~~~~------------------------------~~l~~a~~  213 (278)
T 3k6r_A          166 ENIHLNKVEDRMSAYNMDNRDFPG--ENIADRILMGYVVRTH------------------------------EFIPKALS  213 (278)
T ss_dssp             HHHHHTTCTTTEEEECSCTTTCCC--CSCEEEEEECCCSSGG------------------------------GGHHHHHH
T ss_pred             HHHHHcCCCCcEEEEeCcHHHhcc--ccCCCEEEECCCCcHH------------------------------HHHHHHHH
Confidence            999999999999999999987654  3789999999996421                              34556678


Q ss_pred             ccccCcEEEEEEC------CcCcHHHHHHHHhccccCCce----eEEEEecCC-CCceEEE
Q 017476          318 MLKPGGFFAFETN------GEKQCKFLKNYLENDSACSFC----NVSIVSDFA-GIQRFVT  367 (371)
Q Consensus       318 ~LkpgG~lvle~~------~~~q~~~v~~~l~~~~~~gf~----~v~~~~Dl~-g~~R~~~  367 (371)
                      .|++||++.+...      .....+.+.++.++   .||.    .++..++++ +..++++
T Consensus       214 ~lk~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~---~g~~v~~~~~~~Vk~yaP~~~hvv~  271 (278)
T 3k6r_A          214 IAKDGAIIHYHNTVPEKLMPREPFETFKRITKE---YGYDVEKLNELKIKRYAPGVWHVVL  271 (278)
T ss_dssp             HEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHH---TTCEEEEEEEEEEEEETTTEEEEEE
T ss_pred             HcCCCCEEEEEeeecccccchhHHHHHHHHHHH---cCCcEEEEEEEEEEeECcCccEEEE
Confidence            9999999876432      12234556666554   4553    233455664 5555554

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.66  E-value=6.4e-16  Score=141.41  Aligned_cols=125  Identities=12%  Similarity=0.128  Sum_probs=101.2

Q ss_pred             cccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcE
Q 017476          171 IPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ-DII  249 (371)
Q Consensus       171 iPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~-~~v  249 (371)
                      +..+++..++..+....    ...++.+|||+|||+|..++.+++.++++++|+++|+|+++++.|++|++..|+. +++
T Consensus        36 ~i~~~~~~~l~~l~~~~----~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i  111 (221)
T 3dr5_A           36 APDEMTGQLLTTLAATT----NGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRV  111 (221)
T ss_dssp             CCCHHHHHHHHHHHHHS----CCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGE
T ss_pred             CCCHHHHHHHHHHHHhh----CCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcE
Confidence            34577777777776554    2222349999999999999999998756889999999999999999999999998 789


Q ss_pred             EEEEcCcccccccC-CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476          250 EIRQGSWFGKLKDV-EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE  328 (371)
Q Consensus       250 ~~~~gD~~~~l~~~-~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle  328 (371)
                      +++++|..+.++.. .++||+|+++.+.                             ..+..+++.+.+.|+|||++++.
T Consensus       112 ~~~~gda~~~l~~~~~~~fD~V~~d~~~-----------------------------~~~~~~l~~~~~~LkpGG~lv~d  162 (221)
T 3dr5_A          112 RFLLSRPLDVMSRLANDSYQLVFGQVSP-----------------------------MDLKALVDAAWPLLRRGGALVLA  162 (221)
T ss_dssp             EEECSCHHHHGGGSCTTCEEEEEECCCT-----------------------------TTHHHHHHHHHHHEEEEEEEEET
T ss_pred             EEEEcCHHHHHHHhcCCCcCeEEEcCcH-----------------------------HHHHHHHHHHHHHcCCCcEEEEe
Confidence            99999998766544 5789999997532                             11335788888999999999984

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.65  E-value=7.6e-16  Score=163.18  Aligned_cols=120  Identities=18%  Similarity=0.225  Sum_probs=98.6

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEcCcccccccCCCceeEEEEc
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ-DIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~-~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      ++.+|||+|||+|.+++.+++.  ...+|++||+|+.+++.|++|++.+++. ++++++++|+++.+....++||+|++|
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~--ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~D  616 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLG--GARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFID  616 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEEC
T ss_pred             CCCcEEEeeechhHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEEC
Confidence            4679999999999999999984  4457999999999999999999999997 579999999988665545789999999


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG  331 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~  331 (371)
                      |||.......               ..-.++...+..++..+.++|+|||+++++++.
T Consensus       617 PP~f~~~~~~---------------~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          617 PPTFSNSKRM---------------EDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             CCSBC----------------------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             CccccCCccc---------------hhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            9997533210               001245678899999999999999999999954

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.65  E-value=1.3e-15  Score=148.00  Aligned_cols=159  Identities=21%  Similarity=0.239  Sum_probs=119.9

Q ss_pred             cceeeEeeCC--cccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 017476          159 RDLVLSVEEG--VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA  236 (371)
Q Consensus       159 ~~~~~~v~~~--vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A  236 (371)
                      .+..|.+++.  .+.++..++.+  .+...+      .++.+|||+|||+|.+++. ++   ...+|+|+|+|+.+++.|
T Consensus       165 ~g~~f~~d~~~~~~~~~~~~er~--~i~~~~------~~~~~VLDlg~G~G~~~l~-a~---~~~~V~~vD~s~~ai~~a  232 (336)
T 2yx1_A          165 NGYRLWVDIAKVYFSPRLGGERA--RIMKKV------SLNDVVVDMFAGVGPFSIA-CK---NAKKIYAIDINPHAIELL  232 (336)
T ss_dssp             TTEEEEEETTTSCCCGGGHHHHH--HHHHHC------CTTCEEEETTCTTSHHHHH-TT---TSSEEEEEESCHHHHHHH
T ss_pred             CCEEEEEehHHhccCCccHHHHH--HHHHhc------CCCCEEEEccCccCHHHHh-cc---CCCEEEEEECCHHHHHHH
Confidence            4677888776  44466666665  333333      1466999999999999999 77   367999999999999999


Q ss_pred             HHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHh
Q 017476          237 AFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTA  316 (371)
Q Consensus       237 ~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~  316 (371)
                      ++|++.+++.++++++++|+.+.+    ++||+|++|||+...                              .+++.+.
T Consensus       233 ~~n~~~n~l~~~v~~~~~D~~~~~----~~fD~Vi~dpP~~~~------------------------------~~l~~~~  278 (336)
T 2yx1_A          233 KKNIKLNKLEHKIIPILSDVREVD----VKGNRVIMNLPKFAH------------------------------KFIDKAL  278 (336)
T ss_dssp             HHHHHHTTCTTTEEEEESCGGGCC----CCEEEEEECCTTTGG------------------------------GGHHHHH
T ss_pred             HHHHHHcCCCCcEEEEECChHHhc----CCCcEEEECCcHhHH------------------------------HHHHHHH
Confidence            999999999778999999998765    689999999997521                              4566777


Q ss_pred             cccccCcEEEEEECCcCcHHHHHHHHhccccCCce--eEEEEecCCCCceEE
Q 017476          317 SMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFC--NVSIVSDFAGIQRFV  366 (371)
Q Consensus       317 ~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~--~v~~~~Dl~g~~R~~  366 (371)
                      +.|+|||++++...... .+.+.+.+.+.  .+|.  .++..+|++...+.+
T Consensus       279 ~~L~~gG~l~~~~~~~~-~~~~~~~l~~~--~~~~i~~~~~v~~~~p~~~~~  327 (336)
T 2yx1_A          279 DIVEEGGVIHYYTIGKD-FDKAIKLFEKK--CDCEVLEKRIVKSYAPREYIL  327 (336)
T ss_dssp             HHEEEEEEEEEEEEESS-SHHHHHHHHHH--SEEEEEEEEEEEEEETTEEEE
T ss_pred             HHcCCCCEEEEEEeecC-chHHHHHHHHh--cCCcEEEEEEEeccCCCCCEE
Confidence            89999999888653333 45566666642  2455  467778887766644

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.65  E-value=4.3e-15  Score=133.93  Aligned_cols=121  Identities=18%  Similarity=0.130  Sum_probs=99.9

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      .++.+|||+|||+|.+++.+++.   +.+|+|+|+|+.+++.|++|++.++++++++++++|+.+.+.. .+.||+|++|
T Consensus        54 ~~~~~vLDlGcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~-~~~~D~v~~~  129 (204)
T 3njr_A           54 RRGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALAD-LPLPEAVFIG  129 (204)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTT-SCCCSEEEEC
T ss_pred             CCCCEEEEecCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhccc-CCCCCEEEEC
Confidence            35679999999999999999985   5799999999999999999999999986799999999875544 2579999996


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCcee
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCN  352 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~  352 (371)
                      +..                              ... +++.+.+.|+|||++++......+...+.+++++   .||.-
T Consensus       130 ~~~------------------------------~~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~---~g~~i  174 (204)
T 3njr_A          130 GGG------------------------------SQA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHAR---HGGQL  174 (204)
T ss_dssp             SCC------------------------------CHH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHH---HCSEE
T ss_pred             Ccc------------------------------cHH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHh---CCCcE
Confidence            421                              022 7788889999999999998766777788888886   34643

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.65  E-value=5.5e-15  Score=137.14  Aligned_cols=160  Identities=14%  Similarity=0.197  Sum_probs=113.2

Q ss_pred             chHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 017476          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ  253 (371)
Q Consensus       174 p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~  253 (371)
                      +....++..+....       ++.+|||+|||+|..++.+++.++++.+|+|+|+|+.+++.|++|+...++.++++++.
T Consensus        49 ~~~~~~l~~l~~~~-------~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~  121 (248)
T 3tfw_A           49 ANQGQFLALLVRLT-------QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLRE  121 (248)
T ss_dssp             HHHHHHHHHHHHHH-------TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred             HHHHHHHHHHHhhc-------CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE
Confidence            34444555544433       35699999999999999999987437899999999999999999999999988899999


Q ss_pred             cCcccccccCC--CceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC
Q 017476          254 GSWFGKLKDVE--GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG  331 (371)
Q Consensus       254 gD~~~~l~~~~--~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~  331 (371)
                      +|+.+.++...  ++||+|+++.+.                             ..+..+++.+.+.|+|||++++....
T Consensus       122 ~d~~~~l~~~~~~~~fD~V~~d~~~-----------------------------~~~~~~l~~~~~~LkpGG~lv~~~~~  172 (248)
T 3tfw_A          122 GPALQSLESLGECPAFDLIFIDADK-----------------------------PNNPHYLRWALRYSRPGTLIIGDNVV  172 (248)
T ss_dssp             SCHHHHHHTCCSCCCCSEEEECSCG-----------------------------GGHHHHHHHHHHTCCTTCEEEEECCS
T ss_pred             cCHHHHHHhcCCCCCeEEEEECCch-----------------------------HHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence            99876544332  489999996431                             11336788888999999999987532


Q ss_pred             cC--------------cHHHHHHHHhccccCCceeEEEEe-cCCCCceEEEEEeC
Q 017476          332 EK--------------QCKFLKNYLENDSACSFCNVSIVS-DFAGIQRFVTGFRQ  371 (371)
Q Consensus       332 ~~--------------q~~~v~~~l~~~~~~gf~~v~~~~-Dl~g~~R~~~a~~~  371 (371)
                      ..              ....+.+.+.+  ...|....+.. ...+.+-|.+++++
T Consensus       173 ~~g~v~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~l~~~g~~~~DG~~i~~~~  225 (248)
T 3tfw_A          173 RDGEVVNPQSADERVQGVRQFIEMMGA--EPRLTATALQTVGTKGWDGFTLAWVN  225 (248)
T ss_dssp             GGGGGGCTTCCCHHHHHHHHHHHHHHH--CTTEEEEEEEECSTTCSEEEEEEEEC
T ss_pred             cCCcccCccccchHHHHHHHHHHHHhh--CCCEEEEEeecCCCCCCCeeEEEEEe
Confidence            21              11233344443  24565433322 12456888888764

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.65  E-value=9.8e-15  Score=134.65  Aligned_cols=148  Identities=19%  Similarity=0.163  Sum_probs=112.1

Q ss_pred             chHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 017476          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ  253 (371)
Q Consensus       174 p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~  253 (371)
                      |.+...+..++..+ .  ...++.+|||+|||+|.++..+++.. + .+|+|+|+|+.+++.|++|+...++.+++++++
T Consensus        28 ~~~~~~~~~~l~~l-~--~~~~~~~vLDiG~G~G~~~~~l~~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~  102 (257)
T 3f4k_A           28 PGSPEATRKAVSFI-N--ELTDDAKIADIGCGTGGQTLFLADYV-K-GQITGIDLFPDFIEIFNENAVKANCADRVKGIT  102 (257)
T ss_dssp             SCCHHHHHHHHTTS-C--CCCTTCEEEEETCTTSHHHHHHHHHC-C-SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred             CCCHHHHHHHHHHH-h--cCCCCCeEEEeCCCCCHHHHHHHHhC-C-CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEE
Confidence            44455566666554 1  22346799999999999999999985 4 499999999999999999999999988899999


Q ss_pred             cCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC--
Q 017476          254 GSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG--  331 (371)
Q Consensus       254 gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~--  331 (371)
                      +|+.+ ++...++||+|+++......                           ....+++.+.+.|+|||++++....  
T Consensus       103 ~d~~~-~~~~~~~fD~v~~~~~l~~~---------------------------~~~~~l~~~~~~L~pgG~l~~~~~~~~  154 (257)
T 3f4k_A          103 GSMDN-LPFQNEELDLIWSEGAIYNI---------------------------GFERGMNEWSKYLKKGGFIAVSEASWF  154 (257)
T ss_dssp             CCTTS-CSSCTTCEEEEEEESCSCCC---------------------------CHHHHHHHHHTTEEEEEEEEEEEEEES
T ss_pred             CChhh-CCCCCCCEEEEEecChHhhc---------------------------CHHHHHHHHHHHcCCCcEEEEEEeecc
Confidence            99954 33335789999997433210                           0236888999999999999997621  


Q ss_pred             ------------------cCcHHHHHHHHhccccCCceeEEEEe
Q 017476          332 ------------------EKQCKFLKNYLENDSACSFCNVSIVS  357 (371)
Q Consensus       332 ------------------~~q~~~v~~~l~~~~~~gf~~v~~~~  357 (371)
                                        ....+.+.+++++   .||..+++..
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---aGf~~v~~~~  195 (257)
T 3f4k_A          155 TSERPAEIEDFWMDAYPEISVIPTCIDKMER---AGYTPTAHFI  195 (257)
T ss_dssp             SSCCCHHHHHHHHHHCTTCCBHHHHHHHHHH---TTEEEEEEEE
T ss_pred             CCCChHHHHHHHHHhCCCCCCHHHHHHHHHH---CCCeEEEEEE
Confidence                              2234567777775   7898887653

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.64  E-value=2.5e-15  Score=139.47  Aligned_cols=123  Identities=15%  Similarity=0.175  Sum_probs=103.7

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|.+++.+++. ++..+|+|+|+++.+++.|++|++.+|+.++++++++|.++.+.. ..+||+|+.  
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~-~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~-~~~~D~Ivi--   96 (244)
T 3gnl_A           21 KNERIADIGSDHAYLPCFAVKN-QTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEK-KDAIDTIVI--   96 (244)
T ss_dssp             SSEEEEEETCSTTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-GGCCCEEEE--
T ss_pred             CCCEEEEECCccHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCc-cccccEEEE--
Confidence            4569999999999999999996 467799999999999999999999999998999999999987653 235999875  


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCcee
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCN  352 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~  352 (371)
                              ..                  -|-+.+..+++.+...|+++|++++.-.  ...+.++++|.+   .||.-
T Consensus        97 --------ag------------------mGg~lI~~IL~~~~~~L~~~~~lIlq~~--~~~~~lr~~L~~---~Gf~i  143 (244)
T 3gnl_A           97 --------AG------------------MGGTLIRTILEEGAAKLAGVTKLILQPN--IAAWQLREWSEQ---NNWLI  143 (244)
T ss_dssp             --------EE------------------ECHHHHHHHHHHTGGGGTTCCEEEEEES--SCHHHHHHHHHH---HTEEE
T ss_pred             --------eC------------------CchHHHHHHHHHHHHHhCCCCEEEEEcC--CChHHHHHHHHH---CCCEE
Confidence                    00                  1235677899999999999999999883  578899999986   57864

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.64  E-value=9.5e-16  Score=152.11  Aligned_cols=176  Identities=17%  Similarity=0.238  Sum_probs=117.4

Q ss_pred             cccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCc
Q 017476          169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDI  248 (371)
Q Consensus       169 vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~  248 (371)
                      ++.|+...+.+++    .+ .   ..++.+|||+|||+|.+++.+++.+++..+++|+|+++.+++.|          .+
T Consensus        21 ~~TP~~l~~~~~~----~~-~---~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~   82 (421)
T 2ih2_A           21 VETPPEVVDFMVS----LA-E---APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PW   82 (421)
T ss_dssp             CCCCHHHHHHHHH----HC-C---CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TT
T ss_pred             EeCCHHHHHHHHH----hh-c---cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CC
Confidence            4556655444444    43 1   12356999999999999999998764567999999999999877          35


Q ss_pred             EEEEEcCcccccccCCCceeEEEEcCCCCCCCCccc----chhhhc-ccCccccccCCCCcHHHHHHHHHHHhcccccCc
Q 017476          249 IEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISG----LQVEVG-KHEPRLALDGGVDGLDYLLHLCNGTASMLKPGG  323 (371)
Q Consensus       249 v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~----l~~ev~-~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG  323 (371)
                      ++++++|+.+...  .++||+|++||||.......+    +..+.+ .+++..+...|  ..+.+..+++.+.++|++||
T Consensus        83 ~~~~~~D~~~~~~--~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~fl~~~~~~Lk~~G  158 (421)
T 2ih2_A           83 AEGILADFLLWEP--GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKG--KYNLYGAFLEKAVRLLKPGG  158 (421)
T ss_dssp             EEEEESCGGGCCC--SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCT--TCCHHHHHHHHHHHHEEEEE
T ss_pred             CcEEeCChhhcCc--cCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccC--CccHHHHHHHHHHHHhCCCC
Confidence            9999999987543  368999999999987654211    212221 12222122222  24566789999999999999


Q ss_pred             EEEEEECCc----CcHHHHHHHHhccccCCceeEEEEec---CCCCceEEEEE
Q 017476          324 FFAFETNGE----KQCKFLKNYLENDSACSFCNVSIVSD---FAGIQRFVTGF  369 (371)
Q Consensus       324 ~lvle~~~~----~q~~~v~~~l~~~~~~gf~~v~~~~D---l~g~~R~~~a~  369 (371)
                      .+++.++..    .+.+.+++++.+   .++..+..+.+   -.+..++++..
T Consensus       159 ~~~~i~p~~~l~~~~~~~lr~~l~~---~~~~~i~~l~~~F~~~~~~~~il~~  208 (421)
T 2ih2_A          159 VLVFVVPATWLVLEDFALLREFLAR---EGKTSVYYLGEVFPQKKVSAVVIRF  208 (421)
T ss_dssp             EEEEEEEGGGGTCGGGHHHHHHHHH---HSEEEEEEEESCSTTCCCCEEEEEE
T ss_pred             EEEEEEChHHhcCccHHHHHHHHHh---cCCeEEEECCCCCCCCCccEEEEEE
Confidence            999998532    256788888876   34434433332   23455555443

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.64  E-value=2e-15  Score=146.80  Aligned_cols=143  Identities=22%  Similarity=0.342  Sum_probs=106.3

Q ss_pred             eeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 017476          161 LVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (371)
Q Consensus       161 ~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~  240 (371)
                      +.+...+++|.+. ......+.+++.+    ....+.+|||+|||+|.+++.+++.. +..+|+|+|+|+.+++.|++|+
T Consensus       167 ~~~~~~~gvf~~~-~~d~~~~~ll~~l----~~~~~~~VLDlGcG~G~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~~~  240 (343)
T 2pjd_A          167 LTVKTLPGVFSRD-GLDVGSQLLLSTL----TPHTKGKVLDVGCGAGVLSVAFARHS-PKIRLTLCDVSAPAVEASRATL  240 (343)
T ss_dssp             EEEEECTTCTTSS-SCCHHHHHHHHHS----CTTCCSBCCBTTCTTSHHHHHHHHHC-TTCBCEEEESBHHHHHHHHHHH
T ss_pred             eEEEecCCccCCC-CCcHHHHHHHHhc----CcCCCCeEEEecCccCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHH
Confidence            4566778888743 1222233333333    11235689999999999999999974 7779999999999999999999


Q ss_pred             HHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccc
Q 017476          241 QRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLK  320 (371)
Q Consensus       241 ~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~Lk  320 (371)
                      ..+++.  ++++.+|+.+..   .++||+|++||||.....                     ...+....+++.+.++|+
T Consensus       241 ~~~~~~--~~~~~~d~~~~~---~~~fD~Iv~~~~~~~g~~---------------------~~~~~~~~~l~~~~~~Lk  294 (343)
T 2pjd_A          241 AANGVE--GEVFASNVFSEV---KGRFDMIISNPPFHDGMQ---------------------TSLDAAQTLIRGAVRHLN  294 (343)
T ss_dssp             HHTTCC--CEEEECSTTTTC---CSCEEEEEECCCCCSSSH---------------------HHHHHHHHHHHHHGGGEE
T ss_pred             HHhCCC--CEEEEccccccc---cCCeeEEEECCCcccCcc---------------------CCHHHHHHHHHHHHHhCC
Confidence            998875  677899987643   468999999999863211                     013445689999999999


Q ss_pred             cCcEEEEEECCcCcH
Q 017476          321 PGGFFAFETNGEKQC  335 (371)
Q Consensus       321 pgG~lvle~~~~~q~  335 (371)
                      |||.+++..+.....
T Consensus       295 pgG~l~i~~~~~~~~  309 (343)
T 2pjd_A          295 SGGELRIVANAFLPY  309 (343)
T ss_dssp             EEEEEEEEEETTSSH
T ss_pred             CCcEEEEEEcCCCCc
Confidence            999999988554443

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.64  E-value=7.3e-16  Score=155.62  Aligned_cols=140  Identities=17%  Similarity=0.238  Sum_probs=107.1

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|..++.+|+.+++.++|+|+|+|+.+++.+++|++++|+.  +.++++|..+......++||+|++||
T Consensus       101 ~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l~~~~~~~FD~Il~D~  178 (464)
T 3m6w_A          101 PGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRALAEAFGTYFHRVLLDA  178 (464)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHHHHHHCSCEEEEEEEC
T ss_pred             CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHhhhhccccCCEEEECC
Confidence            5679999999999999999998755579999999999999999999999986  99999998664322347899999999


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHH----HHHHHHHHHhcccccCcEEEEEEC---CcCcHHHHHHHHhc
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLD----YLLHLCNGTASMLKPGGFFAFETN---GEKQCKFLKNYLEN  344 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~----~~~~il~~a~~~LkpgG~lvle~~---~~~q~~~v~~~l~~  344 (371)
                      ||.....+        +..|.....-..+.+.    ..+.+++.+.++|||||+|++.+.   .....+.+..++++
T Consensus       179 PcSg~G~~--------rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eEne~vv~~~l~~  247 (464)
T 3m6w_A          179 PCSGEGMF--------RKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFLKA  247 (464)
T ss_dssp             CCCCGGGT--------TTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHH
T ss_pred             CcCCcccc--------ccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhcCHHHHHHHHHH
Confidence            99765433        2333333322233333    337899999999999999999663   23355566677765

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.64  E-value=3.1e-15  Score=143.99  Aligned_cols=144  Identities=17%  Similarity=0.189  Sum_probs=103.9

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      .++.+|||+|||+|..+..+++.+++.++|+|+|+|+.+++.+++|++++|+.+ ++++++|+.+... ..++||+|++|
T Consensus       117 ~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~-v~~~~~D~~~~~~-~~~~fD~Il~d  194 (315)
T 1ixk_A          117 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLN-VILFHSSSLHIGE-LNVEFDKILLD  194 (315)
T ss_dssp             CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCS-EEEESSCGGGGGG-GCCCEEEEEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCe-EEEEECChhhccc-ccccCCEEEEe
Confidence            356799999999999999999986456899999999999999999999999875 9999999876432 34689999999


Q ss_pred             CCCCCCCCcccchhhhcc-cCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC---cCcHHHHHHHHhc
Q 017476          274 PPYIPSDDISGLQVEVGK-HEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG---EKQCKFLKNYLEN  344 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~-~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~---~~q~~~v~~~l~~  344 (371)
                      ||+.....+... ++... +.+..    ..+.......+++.+.++|||||++++.+..   ....+.+..++++
T Consensus       195 ~Pcsg~g~~~~~-p~~~~~~~~~~----~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~  264 (315)
T 1ixk_A          195 APCTGSGTIHKN-PERKWNRTMDD----IKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDN  264 (315)
T ss_dssp             CCTTSTTTCC---------CCHHH----HHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHH
T ss_pred             CCCCCcccccCC-hhHhhcCCHHH----HHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhc
Confidence            998755443211 11111 11100    0011234468999999999999999996632   2344456677764

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.64  E-value=4.3e-15  Score=146.14  Aligned_cols=132  Identities=17%  Similarity=0.166  Sum_probs=104.8

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc-CCCceeEEEEc
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VEGKLSGVVSN  273 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~-~~~~fDlIvsN  273 (371)
                      ++.+|||+| |+|.+++.+++. ++..+|+|+|+|+.+++.|++|++.+|+. +++++++|+.+.++. ..++||+|++|
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~-~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~~~~~fD~Vi~~  248 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLS-GLPKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDYALHKFDTFITD  248 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHH-TCCSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTTTSSCBSEEEEC
T ss_pred             CCCEEEEEC-CCCHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhhccCCccEEEEC
Confidence            467999999 999999999986 46679999999999999999999999987 699999999875543 34689999999


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCc-EEEEEECC-cCcH---HHHHHHHh-cccc
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGG-FFAFETNG-EKQC---KFLKNYLE-NDSA  347 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG-~lvle~~~-~~q~---~~v~~~l~-~~~~  347 (371)
                      |||...                           ....+++.+.+.|+||| .+++++.. ....   ..+.+.+. +   
T Consensus       249 ~p~~~~---------------------------~~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~l~~~---  298 (373)
T 2qm3_A          249 PPETLE---------------------------AIRAFVGRGIATLKGPRCAGYFGITRRESSLDKWREIQKLLLNE---  298 (373)
T ss_dssp             CCSSHH---------------------------HHHHHHHHHHHTBCSTTCEEEEEECTTTCCHHHHHHHHHHHHHT---
T ss_pred             CCCchH---------------------------HHHHHHHHHHHHcccCCeEEEEEEecCcCCHHHHHHHHHHHHHh---
Confidence            998631                           02478899999999999 55888743 1334   56677775 4   


Q ss_pred             CCceeEEEEecC
Q 017476          348 CSFCNVSIVSDF  359 (371)
Q Consensus       348 ~gf~~v~~~~Dl  359 (371)
                      .||..+.+.+++
T Consensus       299 ~g~~~~~~~~~~  310 (373)
T 2qm3_A          299 FNVVITDIIRNF  310 (373)
T ss_dssp             SCCEEEEEEEEE
T ss_pred             cCcchhhhhhhh
Confidence            567666666654

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.64  E-value=1.7e-15  Score=142.44  Aligned_cols=129  Identities=18%  Similarity=0.174  Sum_probs=106.2

Q ss_pred             CCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEEcCcccccccCCCceeEEE
Q 017476          193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY-GLQDIIEIRQGSWFGKLKDVEGKLSGVV  271 (371)
Q Consensus       193 ~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~-gl~~~v~~~~gD~~~~l~~~~~~fDlIv  271 (371)
                      ..++.+|||+|||+|.++..+++.+.+..+|+|+|+++.+++.|++|+..+ |.. +++++++|+.+.+.  .++||+|+
T Consensus       108 ~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~-~v~~~~~d~~~~~~--~~~fD~Vi  184 (275)
T 1yb2_A          108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIG-NVRTSRSDIADFIS--DQMYDAVI  184 (275)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCT-TEEEECSCTTTCCC--SCCEEEEE
T ss_pred             CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCC-cEEEEECchhccCc--CCCccEEE
Confidence            345679999999999999999997556789999999999999999999988 754 59999999987544  36899999


Q ss_pred             EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCce
Q 017476          272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFC  351 (371)
Q Consensus       272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~  351 (371)
                      +|+|..                               ..+++.+.+.|+|||++++......+.+.+.+.+++   .||.
T Consensus       185 ~~~~~~-------------------------------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~---~Gf~  230 (275)
T 1yb2_A          185 ADIPDP-------------------------------WNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSA---SGMH  230 (275)
T ss_dssp             ECCSCG-------------------------------GGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGG---GTEE
T ss_pred             EcCcCH-------------------------------HHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH---CCCe
Confidence            987621                               046778889999999999999665577777777775   6798


Q ss_pred             eEEEEec
Q 017476          352 NVSIVSD  358 (371)
Q Consensus       352 ~v~~~~D  358 (371)
                      .+++...
T Consensus       231 ~~~~~~~  237 (275)
T 1yb2_A          231 HLETVEL  237 (275)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            8887763

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.63  E-value=6.6e-15  Score=137.19  Aligned_cols=147  Identities=16%  Similarity=0.125  Sum_probs=111.8

Q ss_pred             hHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q 017476          175 ETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG  254 (371)
Q Consensus       175 ~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~g  254 (371)
                      ........++..+ .  ...++.+|||+|||+|.++..+++.  +..+|+|+|+|+.+++.|++++...+++++++++++
T Consensus        29 ~~~~~~~~~l~~l-~--~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~  103 (267)
T 3kkz_A           29 GSPEVTLKALSFI-D--NLTEKSLIADIGCGTGGQTMVLAGH--VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVG  103 (267)
T ss_dssp             CCHHHHHHHHTTC-C--CCCTTCEEEEETCTTCHHHHHHHTT--CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC
T ss_pred             CCHHHHHHHHHhc-c--cCCCCCEEEEeCCCCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEc
Confidence            3444555555554 1  2345679999999999999999986  567999999999999999999999999888999999


Q ss_pred             CcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC---
Q 017476          255 SWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG---  331 (371)
Q Consensus       255 D~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~---  331 (371)
                      |+.+ ++...++||+|+++..+...                           ....+++.+.+.|||||++++....   
T Consensus       104 d~~~-~~~~~~~fD~i~~~~~~~~~---------------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~  155 (267)
T 3kkz_A          104 SMDD-LPFRNEELDLIWSEGAIYNI---------------------------GFERGLNEWRKYLKKGGYLAVSECSWFT  155 (267)
T ss_dssp             CTTS-CCCCTTCEEEEEESSCGGGT---------------------------CHHHHHHHHGGGEEEEEEEEEEEEEESS
T ss_pred             Chhh-CCCCCCCEEEEEEcCCceec---------------------------CHHHHHHHHHHHcCCCCEEEEEEeeecC
Confidence            9965 33235789999997553210                           1236889999999999999997521   


Q ss_pred             -----------------cCcHHHHHHHHhccccCCceeEEEEe
Q 017476          332 -----------------EKQCKFLKNYLENDSACSFCNVSIVS  357 (371)
Q Consensus       332 -----------------~~q~~~v~~~l~~~~~~gf~~v~~~~  357 (371)
                                       ....+.+.+++++   .||..+++..
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---aGf~~v~~~~  195 (267)
T 3kkz_A          156 DERPAEINDFWMDAYPEIDTIPNQVAKIHK---AGYLPVATFI  195 (267)
T ss_dssp             SCCCHHHHHHHHHHCTTCEEHHHHHHHHHH---TTEEEEEEEE
T ss_pred             CCChHHHHHHHHHhCCCCCCHHHHHHHHHH---CCCEEEEEEE
Confidence                             1134566777775   7898887754

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.63  E-value=9.8e-15  Score=144.64  Aligned_cols=145  Identities=14%  Similarity=0.129  Sum_probs=107.7

Q ss_pred             cceeeEeeCC-----cccc-cchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHH
Q 017476          159 RDLVLSVEEG-----VFIP-RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLA  232 (371)
Q Consensus       159 ~~~~~~v~~~-----vliP-rp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~a  232 (371)
                      .++.|.+++.     .++. ..+.   ...+.+.       .++.+|||+|||+|.+++.+++.  ...+|+|+|+|+.+
T Consensus       188 ~g~~f~v~~~~~~~tgff~~~~~~---~~~l~~~-------~~~~~VLDl~cG~G~~sl~la~~--g~~~V~~vD~s~~a  255 (396)
T 3c0k_A          188 HGMKLLVDIQHGHKTGYYLDQRDS---RLATRRY-------VENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEA  255 (396)
T ss_dssp             TTEEEEECTTTSSTTSSCGGGHHH---HHHHHHH-------CTTCEEEEESCTTCSHHHHHHHT--TCSEEEEEESCHHH
T ss_pred             CCEEEEEeccccccCCcCcCHHHH---HHHHHHh-------hCCCeEEEeeccCCHHHHHHHHC--CCCEEEEEECCHHH
Confidence            4778888885     4443 1222   2222222       14569999999999999999985  34699999999999


Q ss_pred             HHHHHHHHHHcCC-CCcEEEEEcCcccccccC---CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHH
Q 017476          233 AAVAAFNAQRYGL-QDIIEIRQGSWFGKLKDV---EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYL  308 (371)
Q Consensus       233 l~~A~~n~~~~gl-~~~v~~~~gD~~~~l~~~---~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~  308 (371)
                      ++.|++|++.+++ .++++++++|+++.+...   .++||+|++||||.......     +            .++...+
T Consensus       256 l~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~~-----~------------~~~~~~~  318 (396)
T 3c0k_A          256 LDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQ-----L------------MGACRGY  318 (396)
T ss_dssp             HHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCSSTTTCSSS-----S------------SCCCTHH
T ss_pred             HHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEECCCCCCCChhH-----H------------HHHHHHH
Confidence            9999999999998 657999999998754421   35899999999986543210     0            1123456


Q ss_pred             HHHHHHHhcccccCcEEEEEECCc
Q 017476          309 LHLCNGTASMLKPGGFFAFETNGE  332 (371)
Q Consensus       309 ~~il~~a~~~LkpgG~lvle~~~~  332 (371)
                      ..++..+.+.|+|||++++.++..
T Consensus       319 ~~~l~~~~~~LkpgG~l~~~~~~~  342 (396)
T 3c0k_A          319 KDINMLAIQLLNEGGILLTFSCSG  342 (396)
T ss_dssp             HHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             HHHHHHHHHhcCCCcEEEEEeCCC
Confidence            688899999999999999988543

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.63  E-value=5.7e-15  Score=136.34  Aligned_cols=128  Identities=22%  Similarity=0.221  Sum_probs=104.1

Q ss_pred             CCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEEcCcccc-cccCCCceeEE
Q 017476          193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY-GLQDIIEIRQGSWFGK-LKDVEGKLSGV  270 (371)
Q Consensus       193 ~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~-gl~~~v~~~~gD~~~~-l~~~~~~fDlI  270 (371)
                      ..++.+|||+|||+|.++..+++.+++..+|+++|+++.+++.|++|++.+ | .++++++.+|+.+. ++  .++||+|
T Consensus        94 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-~~~v~~~~~d~~~~~~~--~~~~D~v  170 (258)
T 2pwy_A           94 LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-VENVRFHLGKLEEAELE--EAAYDGV  170 (258)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-CCCEEEEESCGGGCCCC--TTCEEEE
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCEEEEECchhhcCCC--CCCcCEE
Confidence            345679999999999999999998666789999999999999999999988 7 45699999999765 33  3689999


Q ss_pred             EEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCc
Q 017476          271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSF  350 (371)
Q Consensus       271 vsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf  350 (371)
                      ++|+|..                               ..+++.+.+.|+|||.+++......+...+.+.+++   .||
T Consensus       171 ~~~~~~~-------------------------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~---~gf  216 (258)
T 2pwy_A          171 ALDLMEP-------------------------------WKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEA---HPF  216 (258)
T ss_dssp             EEESSCG-------------------------------GGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTT---TTE
T ss_pred             EECCcCH-------------------------------HHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHH---CCC
Confidence            9987621                               146777889999999999999655566677777764   789


Q ss_pred             eeEEEEe
Q 017476          351 CNVSIVS  357 (371)
Q Consensus       351 ~~v~~~~  357 (371)
                      ..+++..
T Consensus       217 ~~~~~~~  223 (258)
T 2pwy_A          217 RLERVLE  223 (258)
T ss_dssp             EEEEEEE
T ss_pred             ceEEEEE
Confidence            8766553

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.63  E-value=1.3e-14  Score=126.25  Aligned_cols=132  Identities=17%  Similarity=0.147  Sum_probs=106.2

Q ss_pred             chHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 017476          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ  253 (371)
Q Consensus       174 p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~  253 (371)
                      +.++.+.+.+.+.+    ...++.+|||+|||+|.++..+++   +..+|+|+|+|+.+++.|++|+..+++. ++++++
T Consensus        18 ~~~~~~~~~~~~~~----~~~~~~~vLdiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~   89 (183)
T 2yxd_A           18 ITKEEIRAVSIGKL----NLNKDDVVVDVGCGSGGMTVEIAK---RCKFVYAIDYLDGAIEVTKQNLAKFNIK-NCQIIK   89 (183)
T ss_dssp             CCCHHHHHHHHHHH----CCCTTCEEEEESCCCSHHHHHHHT---TSSEEEEEECSHHHHHHHHHHHHHTTCC-SEEEEE
T ss_pred             cCHHHHHHHHHHHc----CCCCCCEEEEeCCCCCHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEE
Confidence            45667777777766    233567999999999999999988   4689999999999999999999999885 599999


Q ss_pred             cCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcC
Q 017476          254 GSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEK  333 (371)
Q Consensus       254 gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~  333 (371)
                      +|+.+.++.  ++||+|++|+|    ..                          ...+++.+.+.  |||.+++......
T Consensus        90 ~d~~~~~~~--~~~D~i~~~~~----~~--------------------------~~~~l~~~~~~--~gG~l~~~~~~~~  135 (183)
T 2yxd_A           90 GRAEDVLDK--LEFNKAFIGGT----KN--------------------------IEKIIEILDKK--KINHIVANTIVLE  135 (183)
T ss_dssp             SCHHHHGGG--CCCSEEEECSC----SC--------------------------HHHHHHHHHHT--TCCEEEEEESCHH
T ss_pred             CCccccccC--CCCcEEEECCc----cc--------------------------HHHHHHHHhhC--CCCEEEEEecccc
Confidence            999875543  68999999877    11                          12566666666  9999999987667


Q ss_pred             cHHHHHHHHhccccCCc
Q 017476          334 QCKFLKNYLENDSACSF  350 (371)
Q Consensus       334 q~~~v~~~l~~~~~~gf  350 (371)
                      ....+.+.+++   .||
T Consensus       136 ~~~~~~~~l~~---~g~  149 (183)
T 2yxd_A          136 NAAKIINEFES---RGY  149 (183)
T ss_dssp             HHHHHHHHHHH---TTC
T ss_pred             cHHHHHHHHHH---cCC
Confidence            77788888886   456

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.63  E-value=6.6e-15  Score=144.91  Aligned_cols=160  Identities=21%  Similarity=0.115  Sum_probs=116.8

Q ss_pred             chHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 017476          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ  253 (371)
Q Consensus       174 p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~  253 (371)
                      +..+.+...++...     ..++.+|||+|||+|.+++.++... +..+|+|+|+|+.+++.|++|+..+|+.+++++++
T Consensus       201 ~l~~~la~~l~~~~-----~~~~~~vLD~gCGsG~~~i~~a~~~-~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~  274 (373)
T 3tm4_A          201 HLKASIANAMIELA-----ELDGGSVLDPMCGSGTILIELALRR-YSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQ  274 (373)
T ss_dssp             CCCHHHHHHHHHHH-----TCCSCCEEETTCTTCHHHHHHHHTT-CCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEE
T ss_pred             CccHHHHHHHHHhh-----cCCCCEEEEccCcCcHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEE
Confidence            33556666555443     1246789999999999999999863 44589999999999999999999999977899999


Q ss_pred             cCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcC
Q 017476          254 GSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEK  333 (371)
Q Consensus       254 gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~  333 (371)
                      +|+.+. +...++||+|++||||.......                  ..-.+.|..+++.+.+.|  ||.+++...   
T Consensus       275 ~D~~~~-~~~~~~fD~Ii~npPyg~r~~~~------------------~~~~~ly~~~~~~l~r~l--~g~~~~i~~---  330 (373)
T 3tm4_A          275 GDATQL-SQYVDSVDFAISNLPYGLKIGKK------------------SMIPDLYMKFFNELAKVL--EKRGVFITT---  330 (373)
T ss_dssp             CCGGGG-GGTCSCEEEEEEECCCC------------------------CCHHHHHHHHHHHHHHHE--EEEEEEEES---
T ss_pred             CChhhC-CcccCCcCEEEECCCCCcccCcc------------------hhHHHHHHHHHHHHHHHc--CCeEEEEEC---
Confidence            999774 33347899999999996321100                  011245678999999988  666666663   


Q ss_pred             cHHHHHHHHhccccCCceeEEEEecCCCCceEE
Q 017476          334 QCKFLKNYLENDSACSFCNVSIVSDFAGIQRFV  366 (371)
Q Consensus       334 q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~  366 (371)
                      ..+.+.+.+.+   .||...+..+-++|.-.+-
T Consensus       331 ~~~~~~~~~~~---~G~~~~~~~~~~nG~l~~~  360 (373)
T 3tm4_A          331 EKKAIEEAIAE---NGFEIIHHRVIGHGGLMVH  360 (373)
T ss_dssp             CHHHHHHHHHH---TTEEEEEEEEEEETTEEEE
T ss_pred             CHHHHHHHHHH---cCCEEEEEEEEEcCCEEEE
Confidence            34556667764   6898888888777765543

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.63  E-value=3.1e-15  Score=142.79  Aligned_cols=197  Identities=12%  Similarity=0.112  Sum_probs=126.2

Q ss_pred             CCceeeEee-cccccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEE
Q 017476          146 RKPFQYLVG-CEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSII  224 (371)
Q Consensus       146 ~~P~~yi~g-~~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~  224 (371)
                      .-|.|+|.- ....++..+.++..+.+++.+...+.+.+.......  ...+.+|||+|||+|.++..+++.. +..+|+
T Consensus        42 ~s~~q~i~v~~~~~~g~~l~ldg~~~~~~~de~~y~e~l~~~~l~~--~~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~  118 (296)
T 1inl_A           42 QSDIQRIDIFENPDLGVVFALDGITMTTEKDEFMYHEMLAHVPMFL--HPNPKKVLIIGGGDGGTLREVLKHD-SVEKAI  118 (296)
T ss_dssp             ECSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHH--SSSCCEEEEEECTTCHHHHHHTTST-TCSEEE
T ss_pred             ECCCccEEEEEcCCCcEEEEECCEEeecccchhHHHHHHhHHHHhc--CCCCCEEEEEcCCcCHHHHHHHhcC-CCCEEE
Confidence            356666644 223456788888666666655322222222111000  1235799999999999999999863 568999


Q ss_pred             EEeCCHHHHHHHHHHHHH--cCC-CCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCC
Q 017476          225 AVDLNPLAAAVAAFNAQR--YGL-QDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGG  301 (371)
Q Consensus       225 gvDis~~al~~A~~n~~~--~gl-~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg  301 (371)
                      +||+|+.+++.|++|+..  .++ .++++++.+|+.+.+....++||+|++|+|.....             |...+   
T Consensus       119 ~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~-------------~~~~l---  182 (296)
T 1inl_A          119 LCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTDPTAG-------------QGGHL---  182 (296)
T ss_dssp             EEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEEC-----------------------C---
T ss_pred             EEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEEcCCCcccC-------------chhhh---
Confidence            999999999999999865  333 35799999998776544457899999998742010             11111   


Q ss_pred             CCcHHHHHHHHHHHhcccccCcEEEEEECCc-CcH---HHHHHHHhccccCCceeEEEEe----cC-CCCceEEEEEe
Q 017476          302 VDGLDYLLHLCNGTASMLKPGGFFAFETNGE-KQC---KFLKNYLENDSACSFCNVSIVS----DF-AGIQRFVTGFR  370 (371)
Q Consensus       302 ~dGl~~~~~il~~a~~~LkpgG~lvle~~~~-~q~---~~v~~~l~~~~~~gf~~v~~~~----Dl-~g~~R~~~a~~  370 (371)
                           ....+++.+.+.|+|||+++++.... ...   ..+.+.+++    -|..+..+.    .+ .|..-|++|.+
T Consensus       183 -----~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~----~F~~v~~~~~~vp~~p~g~~~f~~as~  251 (296)
T 1inl_A          183 -----FTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISK----VFPITRVYLGFMTTYPSGMWSYTFASK  251 (296)
T ss_dssp             -----CSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHH----HCSEEEEEEEECTTSTTSEEEEEEEES
T ss_pred             -----hHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHH----HCCceEEEEeecCccCCCceEEEEecC
Confidence                 12368888899999999999987432 222   334444443    276766654    22 56777877765

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.63  E-value=1.8e-14  Score=132.19  Aligned_cols=120  Identities=12%  Similarity=0.121  Sum_probs=96.7

Q ss_pred             cchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q 017476          173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIR  252 (371)
Q Consensus       173 rp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~  252 (371)
                      .++...++..+....       ++.+|||+|||+|..++.+++.. ++.+|+|+|+++.+++.|++|++..++.++++++
T Consensus        56 ~~~~~~~l~~~~~~~-------~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~  127 (232)
T 3ntv_A           56 DRLTLDLIKQLIRMN-------NVKNILEIGTAIGYSSMQFASIS-DDIHVTTIERNETMIQYAKQNLATYHFENQVRII  127 (232)
T ss_dssp             CHHHHHHHHHHHHHH-------TCCEEEEECCSSSHHHHHHHTTC-TTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred             CHHHHHHHHHHHhhc-------CCCEEEEEeCchhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE
Confidence            455555555444433       35699999999999999999954 6889999999999999999999999998789999


Q ss_pred             EcCcccccc-cCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          253 QGSWFGKLK-DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       253 ~gD~~~~l~-~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      .+|+.+.++ ...++||+|++|.+..                             .+..+++.+.+.|+|||++++..
T Consensus       128 ~~d~~~~~~~~~~~~fD~V~~~~~~~-----------------------------~~~~~l~~~~~~LkpgG~lv~d~  176 (232)
T 3ntv_A          128 EGNALEQFENVNDKVYDMIFIDAAKA-----------------------------QSKKFFEIYTPLLKHQGLVITDN  176 (232)
T ss_dssp             ESCGGGCHHHHTTSCEEEEEEETTSS-----------------------------SHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             ECCHHHHHHhhccCCccEEEEcCcHH-----------------------------HHHHHHHHHHHhcCCCeEEEEee
Confidence            999988665 4457899999975421                             13468889999999999999843

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.62  E-value=1.8e-15  Score=152.47  Aligned_cols=141  Identities=16%  Similarity=0.239  Sum_probs=107.6

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|..++.+|..+++.++|+|+|+|+.+++.+++|++++|+.+ +.++++|..+......+.||+|++||
T Consensus       105 ~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~n-v~v~~~Da~~l~~~~~~~FD~Il~Da  183 (456)
T 3m4x_A          105 PGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSN-AIVTNHAPAELVPHFSGFFDRIVVDA  183 (456)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSS-EEEECCCHHHHHHHHTTCEEEEEEEC
T ss_pred             CCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEeCCHHHhhhhccccCCEEEECC
Confidence            56799999999999999999987556899999999999999999999999975 99999998664322347899999999


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcH----HHHHHHHHHHhcccccCcEEEEEEC---CcCcHHHHHHHHhc
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGL----DYLLHLCNGTASMLKPGGFFAFETN---GEKQCKFLKNYLEN  344 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl----~~~~~il~~a~~~LkpgG~lvle~~---~~~q~~~v~~~l~~  344 (371)
                      ||.....+        +..|.....-..+.+    ...+.+++.+.++|||||+|++.+.   .....+.|..++++
T Consensus       184 PCSg~G~~--------rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~~l~~  252 (456)
T 3m4x_A          184 PCSGEGMF--------RKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWLVEN  252 (456)
T ss_dssp             CCCCGGGT--------TTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHHHHHHHHH
T ss_pred             CCCCcccc--------ccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHHHHHHHHh
Confidence            99765443        223333222223333    3345899999999999999998663   23455566777765

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.62  E-value=7.6e-15  Score=132.98  Aligned_cols=120  Identities=19%  Similarity=0.264  Sum_probs=95.1

Q ss_pred             chHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 017476          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ  253 (371)
Q Consensus       174 p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~  253 (371)
                      +.+..++..+....       ++.+|||+|||+|..++.+++.++++.+|+++|+++.+++.|++|+...++.+++++++
T Consensus        44 ~~~~~~l~~l~~~~-------~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~  116 (223)
T 3duw_A           44 PTQGKFLQLLVQIQ-------GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRT  116 (223)
T ss_dssp             HHHHHHHHHHHHHH-------TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred             HHHHHHHHHHHHhh-------CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE
Confidence            44555555554433       35699999999999999999986337899999999999999999999999988899999


Q ss_pred             cCcccccccC----CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          254 GSWFGKLKDV----EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       254 gD~~~~l~~~----~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      +|+.+.++..    .++||+|+++++.                             ..+..+++.+.+.|+|||++++..
T Consensus       117 ~d~~~~~~~~~~~~~~~fD~v~~d~~~-----------------------------~~~~~~l~~~~~~L~pgG~lv~~~  167 (223)
T 3duw_A          117 GLALDSLQQIENEKYEPFDFIFIDADK-----------------------------QNNPAYFEWALKLSRPGTVIIGDN  167 (223)
T ss_dssp             SCHHHHHHHHHHTTCCCCSEEEECSCG-----------------------------GGHHHHHHHHHHTCCTTCEEEEES
T ss_pred             cCHHHHHHHHHhcCCCCcCEEEEcCCc-----------------------------HHHHHHHHHHHHhcCCCcEEEEeC
Confidence            9997654321    1579999997551                             113367888899999999999875

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.62  E-value=1.6e-15  Score=142.91  Aligned_cols=141  Identities=16%  Similarity=0.140  Sum_probs=100.4

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc---CCCceeEEE
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD---VEGKLSGVV  271 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~---~~~~fDlIv  271 (371)
                      ++.+|||+|||+|..+..+++.+....+|+|+|+|+.+++.+++|++++|+. +++++++|..+....   ..++||+|+
T Consensus        83 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~~fD~Vl  161 (274)
T 3ajd_A           83 EDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRKYKDYLLKNEIFFDKIL  161 (274)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHhcchhhhhccccCCEEE
Confidence            5679999999999999999997633489999999999999999999999987 599999998664321   146899999


Q ss_pred             EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCc---CcHHHHHHHHhc
Q 017476          272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGE---KQCKFLKNYLEN  344 (371)
Q Consensus       272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~---~q~~~v~~~l~~  344 (371)
                      +||||.....+...        |................+++.+.++|||||++++.+...   ...+.+..++++
T Consensus       162 ~d~Pcs~~g~~~~~--------p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene~~v~~~l~~  229 (274)
T 3ajd_A          162 LDAPCSGNIIKDKN--------RNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQK  229 (274)
T ss_dssp             EEECCC--------------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSHHHHHHHHHH
T ss_pred             EcCCCCCCcccccC--------CCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhHHHHHHHHHh
Confidence            99999764433211        111000000112334689999999999999999977422   445566777765

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.62  E-value=2.9e-15  Score=136.55  Aligned_cols=138  Identities=17%  Similarity=0.114  Sum_probs=107.4

Q ss_pred             cccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCc
Q 017476          169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDI  248 (371)
Q Consensus       169 vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~  248 (371)
                      ..+|+++++.+++.++... .    .++.+|||+|||+|.++..+++.   +.+|+|+|+|+.+++.|++|     . .+
T Consensus        27 ~~~~~~~~~~l~~~~~~~~-~----~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-----~-~~   92 (226)
T 3m33_A           27 RVLSGPDPELTFDLWLSRL-L----TPQTRVLEAGCGHGPDAARFGPQ---AARWAAYDFSPELLKLARAN-----A-PH   92 (226)
T ss_dssp             CEESSSCTTHHHHHHHHHH-C----CTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHH-----C-TT
T ss_pred             cccCCCCHHHHHHHHHHhc-C----CCCCeEEEeCCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHh-----C-CC
Confidence            4568899999988877654 1    24679999999999999999985   47999999999999999998     2 35


Q ss_pred             EEEEEcCcccccccC-CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEE
Q 017476          249 IEIRQGSWFGKLKDV-EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF  327 (371)
Q Consensus       249 v~~~~gD~~~~l~~~-~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvl  327 (371)
                      ++++++|+.+.++.. .++||+|++|+..                  .              .+++.+.+.|||||+++ 
T Consensus        93 ~~~~~~d~~~~~~~~~~~~fD~v~~~~~~------------------~--------------~~l~~~~~~LkpgG~l~-  139 (226)
T 3m33_A           93 ADVYEWNGKGELPAGLGAPFGLIVSRRGP------------------T--------------SVILRLPELAAPDAHFL-  139 (226)
T ss_dssp             SEEEECCSCSSCCTTCCCCEEEEEEESCC------------------S--------------GGGGGHHHHEEEEEEEE-
T ss_pred             ceEEEcchhhccCCcCCCCEEEEEeCCCH------------------H--------------HHHHHHHHHcCCCcEEE-
Confidence            999999997666544 5799999997210                  0              45566778999999999 


Q ss_pred             EECCcCcHHHHHHHHhccccCCceeEEEE
Q 017476          328 ETNGEKQCKFLKNYLENDSACSFCNVSIV  356 (371)
Q Consensus       328 e~~~~~q~~~v~~~l~~~~~~gf~~v~~~  356 (371)
                      ..++....+.+.+.+.+   .||..+++.
T Consensus       140 ~~~~~~~~~~~~~~l~~---~Gf~~~~~~  165 (226)
T 3m33_A          140 YVGPRLNVPEVPERLAA---VGWDIVAED  165 (226)
T ss_dssp             EEESSSCCTHHHHHHHH---TTCEEEEEE
T ss_pred             EeCCcCCHHHHHHHHHH---CCCeEEEEE
Confidence            44355566778888885   788776554

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.61  E-value=3.9e-15  Score=147.58  Aligned_cols=125  Identities=24%  Similarity=0.261  Sum_probs=95.9

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCC
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP  275 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPP  275 (371)
                      +.+|||+|||+|.+++.+|+.   ++.|+|+|+|+.+++.|++|++.+++.+  ++.++|+++.+....+.||+|++|||
T Consensus       215 g~~VLDlg~GtG~~sl~~a~~---ga~V~avDis~~al~~a~~n~~~ng~~~--~~~~~D~~~~l~~~~~~fD~Ii~dpP  289 (393)
T 4dmg_A          215 GERVLDVYSYVGGFALRAARK---GAYALAVDKDLEALGVLDQAALRLGLRV--DIRHGEALPTLRGLEGPFHHVLLDPP  289 (393)
T ss_dssp             TCEEEEESCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCCC--EEEESCHHHHHHTCCCCEEEEEECCC
T ss_pred             CCeEEEcccchhHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHhCCCC--cEEEccHHHHHHHhcCCCCEEEECCC
Confidence            679999999999999999984   3559999999999999999999999875  46699998765443455999999999


Q ss_pred             CCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC-CcCcHHHHHHHH
Q 017476          276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN-GEKQCKFLKNYL  342 (371)
Q Consensus       276 Yi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~-~~~q~~~v~~~l  342 (371)
                      |......     .+            .++...+..++..+.+.|+|||++++... .....+...+.+
T Consensus       290 ~f~~~~~-----~~------------~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~~v  340 (393)
T 4dmg_A          290 TLVKRPE-----EL------------PAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVA  340 (393)
T ss_dssp             CCCSSGG-----GH------------HHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHH
T ss_pred             cCCCCHH-----HH------------HHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHH
Confidence            9654321     11            12356788999999999999999996553 333344434333

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.61  E-value=9.7e-15  Score=132.35  Aligned_cols=120  Identities=21%  Similarity=0.301  Sum_probs=96.6

Q ss_pred             chHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 017476          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ  253 (371)
Q Consensus       174 p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~  253 (371)
                      +....++..+....       ++.+|||+|||+|..++.+++.++++.+|+++|+++.+++.|++|++..++.+++++++
T Consensus        50 ~~~~~~l~~l~~~~-------~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~  122 (225)
T 3tr6_A           50 PEQAQLLALLVKLM-------QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRL  122 (225)
T ss_dssp             HHHHHHHHHHHHHH-------TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred             HHHHHHHHHHHHhh-------CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEe
Confidence            45555565555443       35699999999999999999976447899999999999999999999999988899999


Q ss_pred             cCcccccccCC-----CceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476          254 GSWFGKLKDVE-----GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE  328 (371)
Q Consensus       254 gD~~~~l~~~~-----~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle  328 (371)
                      +|+.+.++...     ++||+|++|++.                             ..+..+++.+.++|+|||++++.
T Consensus       123 ~d~~~~~~~~~~~~~~~~fD~v~~~~~~-----------------------------~~~~~~l~~~~~~L~pgG~lv~~  173 (225)
T 3tr6_A          123 SPAKDTLAELIHAGQAWQYDLIYIDADK-----------------------------ANTDLYYEESLKLLREGGLIAVD  173 (225)
T ss_dssp             SCHHHHHHHHHTTTCTTCEEEEEECSCG-----------------------------GGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCHHHHHHHhhhccCCCCccEEEECCCH-----------------------------HHHHHHHHHHHHhcCCCcEEEEe
Confidence            99976544322     689999997651                             11346788888999999999986


Q ss_pred             E
Q 017476          329 T  329 (371)
Q Consensus       329 ~  329 (371)
                      .
T Consensus       174 ~  174 (225)
T 3tr6_A          174 N  174 (225)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.61  E-value=2.7e-14  Score=128.98  Aligned_cols=103  Identities=17%  Similarity=0.101  Sum_probs=84.8

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCC
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP  275 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPP  275 (371)
                      +.+|||+|||+|.++..+++..   .+|+|+|+|+.+++.|++|+..++  .+++++++|+.+. ....++||+|++|++
T Consensus        39 ~~~vLDlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~-~~~~~~~D~v~~~~~  112 (227)
T 1ve3_A           39 RGKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKL-SFEDKTFDYVIFIDS  112 (227)
T ss_dssp             CCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSC-CSCTTCEEEEEEESC
T ss_pred             CCeEEEEeccCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhcC-CCCCCcEEEEEEcCc
Confidence            6799999999999999999863   399999999999999999998877  4599999998763 222468999999987


Q ss_pred             --CCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC
Q 017476          276 --YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN  330 (371)
Q Consensus       276 --Yi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~  330 (371)
                        +..                          ......+++.+.+.|+|||.+++...
T Consensus       113 ~~~~~--------------------------~~~~~~~l~~~~~~L~~gG~l~~~~~  143 (227)
T 1ve3_A          113 IVHFE--------------------------PLELNQVFKEVRRVLKPSGKFIMYFT  143 (227)
T ss_dssp             GGGCC--------------------------HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hHhCC--------------------------HHHHHHHHHHHHHHcCCCcEEEEEec
Confidence              321                          22345788999999999999988753

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.61  E-value=1.6e-14  Score=132.19  Aligned_cols=144  Identities=12%  Similarity=0.099  Sum_probs=103.6

Q ss_pred             CCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccc--cccCCCceeEE
Q 017476          193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK--LKDVEGKLSGV  270 (371)
Q Consensus       193 ~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~--l~~~~~~fDlI  270 (371)
                      ..++.+|||+|||+|.++..+++.+++..+|+|+|+|+.+++.+.++++.+   .+++++.+|+.+.  ++...++||+|
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~~~~D~V  151 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHPHKYRMLIAMVDVI  151 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCGGGGGGGCCCEEEE
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCChhhhcccCCcEEEE
Confidence            345679999999999999999998756689999999999999888888776   3599999999774  22235789999


Q ss_pred             EEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcC----------cHHHHHH
Q 017476          271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEK----------QCKFLKN  340 (371)
Q Consensus       271 vsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~----------q~~~v~~  340 (371)
                      ++|+|..                            +....++..+.+.|+|||++++.+....          .... .+
T Consensus       152 ~~~~~~~----------------------------~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-~~  202 (233)
T 2ipx_A          152 FADVAQP----------------------------DQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASE-VK  202 (233)
T ss_dssp             EECCCCT----------------------------THHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHH-HH
T ss_pred             EEcCCCc----------------------------cHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHH-HH
Confidence            9998711                            1123567788899999999999874210          1112 34


Q ss_pred             HHhccccCCceeEEEEe-c-CCCCceEEEEEeC
Q 017476          341 YLENDSACSFCNVSIVS-D-FAGIQRFVTGFRQ  371 (371)
Q Consensus       341 ~l~~~~~~gf~~v~~~~-D-l~g~~R~~~a~~~  371 (371)
                      +|++   .||..+++.. + +....-+++++++
T Consensus       203 ~l~~---~Gf~~~~~~~~~~~~~~~~~v~~~~~  232 (233)
T 2ipx_A          203 KMQQ---ENMKPQEQLTLEPYERDHAVVVGVYR  232 (233)
T ss_dssp             TTGG---GTEEEEEEEECTTTSSSEEEEEEEEC
T ss_pred             HHHH---CCCceEEEEecCCccCCcEEEEEEeC
Confidence            5553   7898777443 3 3333445666653

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.60  E-value=3.6e-15  Score=141.66  Aligned_cols=154  Identities=20%  Similarity=0.245  Sum_probs=101.5

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC----------------------------
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ----------------------------  246 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~----------------------------  246 (371)
                      ++.+|||+|||+|.+++.+++.+ +..+|+|||+|+.+++.|++|+...+..                            
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~-~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKW-GPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS  124 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHT-CCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence            46799999999999999999987 6789999999999999999997765422                            


Q ss_pred             -----------------------------CcEEEEEcCccccc----ccCCCceeEEEEcCCCCCCCCcccchhhhcccC
Q 017476          247 -----------------------------DIIEIRQGSWFGKL----KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHE  293 (371)
Q Consensus       247 -----------------------------~~v~~~~gD~~~~l----~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~e  293 (371)
                                                   ++++|+++|+....    ....++||+|+|+-.              ..|-
T Consensus       125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~v--------------l~~i  190 (292)
T 3g07_A          125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSL--------------TKWV  190 (292)
T ss_dssp             -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESC--------------HHHH
T ss_pred             cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChH--------------HHHh
Confidence                                         57999999997543    112478999999421              1110


Q ss_pred             ccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCc---------------------HHHHHHHHhccccCCcee
Q 017476          294 PRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQ---------------------CKFLKNYLENDSACSFCN  352 (371)
Q Consensus       294 p~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q---------------------~~~v~~~l~~~~~~gf~~  352 (371)
                      .   +   ..+-+.+..+++.+.++|+|||+|+++...+..                     .+.+.++|.+. ..||..
T Consensus       191 h---l---~~~~~~~~~~l~~~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~-~~GF~~  263 (292)
T 3g07_A          191 H---L---NWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSP-DVGFSS  263 (292)
T ss_dssp             H---H---HHHHHHHHHHHHHHHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHHHCCCCGGGHHHHHTST-TTCCCE
T ss_pred             h---h---cCCHHHHHHHHHHHHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhhcEEEcHHHHHHHHHhc-CCCceE
Confidence            0   0   001235668999999999999999998643221                     12344555520 168988


Q ss_pred             EEEEec----CCCCceEEEEEe
Q 017476          353 VSIVSD----FAGIQRFVTGFR  370 (371)
Q Consensus       353 v~~~~D----l~g~~R~~~a~~  370 (371)
                      ++++..    ..|..|-+..++
T Consensus       264 ~~~~~~~~~~~~g~~r~i~~~~  285 (292)
T 3g07_A          264 YELVATPHNTSKGFQRPVYLFH  285 (292)
T ss_dssp             EEEC-----------CCCEEEE
T ss_pred             EEEeccCCCCCCCccceEEEEE
Confidence            887654    456777444443

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.60  E-value=1.5e-14  Score=132.16  Aligned_cols=122  Identities=16%  Similarity=0.162  Sum_probs=97.7

Q ss_pred             cccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 017476          171 IPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIE  250 (371)
Q Consensus       171 iPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~  250 (371)
                      +..+....++..++...       ++.+|||+|||+|..++.+++.+ ++.+|+++|+++.+++.|++|+..+++.++++
T Consensus        37 ~~~~~~~~~l~~~~~~~-------~~~~vLdiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~  108 (233)
T 2gpy_A           37 IMDLLGMESLLHLLKMA-------APARILEIGTAIGYSAIRMAQAL-PEATIVSIERDERRYEEAHKHVKALGLESRIE  108 (233)
T ss_dssp             CCCHHHHHHHHHHHHHH-------CCSEEEEECCTTSHHHHHHHHHC-TTCEEEEECCCHHHHHHHHHHHHHTTCTTTEE
T ss_pred             CcCHHHHHHHHHHHhcc-------CCCEEEEecCCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEE
Confidence            44555555555444432       35699999999999999999986 67899999999999999999999999887899


Q ss_pred             EEEcCcccccccC--CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476          251 IRQGSWFGKLKDV--EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE  328 (371)
Q Consensus       251 ~~~gD~~~~l~~~--~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle  328 (371)
                      ++.+|+.+.++..  .++||+|++|+|..                             .+..+++.+.+.|+|||++++.
T Consensus       109 ~~~~d~~~~~~~~~~~~~fD~I~~~~~~~-----------------------------~~~~~l~~~~~~L~pgG~lv~~  159 (233)
T 2gpy_A          109 LLFGDALQLGEKLELYPLFDVLFIDAAKG-----------------------------QYRRFFDMYSPMVRPGGLILSD  159 (233)
T ss_dssp             EECSCGGGSHHHHTTSCCEEEEEEEGGGS-----------------------------CHHHHHHHHGGGEEEEEEEEEE
T ss_pred             EEECCHHHHHHhcccCCCccEEEECCCHH-----------------------------HHHHHHHHHHHHcCCCeEEEEE
Confidence            9999998754433  46899999976531                             1347888899999999999997


Q ss_pred             E
Q 017476          329 T  329 (371)
Q Consensus       329 ~  329 (371)
                      .
T Consensus       160 ~  160 (233)
T 2gpy_A          160 N  160 (233)
T ss_dssp             T
T ss_pred             c
Confidence            3

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.60  E-value=2.7e-14  Score=130.17  Aligned_cols=161  Identities=17%  Similarity=0.139  Sum_probs=117.7

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcC
Q 017476          176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGS  255 (371)
Q Consensus       176 te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD  255 (371)
                      .+.+.+.+.+.+ ... ..++.+|||+|||+|.++..+++.   +.+|+|+|+|+.+++.|++++...+.  +++++++|
T Consensus        20 ~~~~~~~~~~~l-~~~-~~~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d   92 (246)
T 1y8c_A           20 YKKWSDFIIEKC-VEN-NLVFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQD   92 (246)
T ss_dssp             HHHHHHHHHHHH-HTT-TCCTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCC
T ss_pred             HHHHHHHHHHHH-HHh-CCCCCeEEEeCCCCCHHHHHHHHC---CCcEEEEECCHHHHHHHHHHHhhcCC--CeEEEecc
Confidence            344555565555 221 125679999999999999999885   46899999999999999999988776  59999999


Q ss_pred             cccccccCCCceeEEEEcC-CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCc--
Q 017476          256 WFGKLKDVEGKLSGVVSNP-PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGE--  332 (371)
Q Consensus       256 ~~~~l~~~~~~fDlIvsNP-PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~--  332 (371)
                      +.+...  .++||+|+++. .+              .|-+         ..+....+++.+.+.|+|||++++++.+.  
T Consensus        93 ~~~~~~--~~~fD~v~~~~~~l--------------~~~~---------~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  147 (246)
T 1y8c_A           93 ISNLNI--NRKFDLITCCLDST--------------NYII---------DSDDLKKYFKAVSNHLKEGGVFIFDINSYYK  147 (246)
T ss_dssp             GGGCCC--SCCEEEEEECTTGG--------------GGCC---------SHHHHHHHHHHHHTTEEEEEEEEEEEECHHH
T ss_pred             cccCCc--cCCceEEEEcCccc--------------cccC---------CHHHHHHHHHHHHHhcCCCcEEEEEecCHHH
Confidence            976422  27899999964 21              1110         01345688999999999999999854211  


Q ss_pred             -------------------------------------------------------CcHHHHHHHHhccccCCceeEEEEe
Q 017476          333 -------------------------------------------------------KQCKFLKNYLENDSACSFCNVSIVS  357 (371)
Q Consensus       333 -------------------------------------------------------~q~~~v~~~l~~~~~~gf~~v~~~~  357 (371)
                                                                             ...+++.+++++   .||..++++.
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~---aGf~~~~~~~  224 (246)
T 1y8c_A          148 LSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKRFDEEHEERAYKEEDIEKYLKH---GQLNILDKVD  224 (246)
T ss_dssp             HHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSSSEEEEEEEEEEECCCHHHHHHHHHH---TTEEEEEEEE
T ss_pred             HHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEecCCcccccEEEEEEEcCCHHHHHHHHHH---CCCeEEEEEc
Confidence                                                                   156788888886   7899999988


Q ss_pred             cCCC------Cce-EEEEEeC
Q 017476          358 DFAG------IQR-FVTGFRQ  371 (371)
Q Consensus       358 Dl~g------~~R-~~~a~~~  371 (371)
                      ++.+      .+| +++|+|+
T Consensus       225 ~~~~~~~~~~~~~~~~varK~  245 (246)
T 1y8c_A          225 CYSNKKVEKFTERITYLVKLG  245 (246)
T ss_dssp             SSSSCBCCTTCSEEEEEEEEC
T ss_pred             ccccCcCCCCceeEEEEEEec
Confidence            7533      234 5667764

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.60  E-value=3.2e-15  Score=138.53  Aligned_cols=120  Identities=19%  Similarity=0.276  Sum_probs=96.9

Q ss_pred             chHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 017476          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ  253 (371)
Q Consensus       174 p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~  253 (371)
                      +++..++..+....       ++.+|||+|||+|..++.+|+.++++++|+++|+++.+++.|++|++..++.+++++++
T Consensus        46 ~~~~~~l~~l~~~~-------~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~  118 (242)
T 3r3h_A           46 PEQAQFMQMLIRLT-------RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRL  118 (242)
T ss_dssp             HHHHHHHHHHHHHH-------TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEE
T ss_pred             HHHHHHHHHHHhhc-------CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE
Confidence            45555666555443       35699999999999999999986457899999999999999999999999988899999


Q ss_pred             cCcccccccC-----CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476          254 GSWFGKLKDV-----EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE  328 (371)
Q Consensus       254 gD~~~~l~~~-----~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle  328 (371)
                      +|+.+.+...     .++||+|+++.+.                             ..+..+++.+.++|+|||++++.
T Consensus       119 gda~~~l~~~~~~~~~~~fD~V~~d~~~-----------------------------~~~~~~l~~~~~~LkpGG~lv~d  169 (242)
T 3r3h_A          119 GPALDTLHSLLNEGGEHQFDFIFIDADK-----------------------------TNYLNYYELALKLVTPKGLIAID  169 (242)
T ss_dssp             SCHHHHHHHHHHHHCSSCEEEEEEESCG-----------------------------GGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCHHHHHHHHhhccCCCCEeEEEEcCCh-----------------------------HHhHHHHHHHHHhcCCCeEEEEE
Confidence            9997755432     3789999996431                             11336788888999999999996


Q ss_pred             E
Q 017476          329 T  329 (371)
Q Consensus       329 ~  329 (371)
                      .
T Consensus       170 ~  170 (242)
T 3r3h_A          170 N  170 (242)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.60  E-value=5.6e-15  Score=135.48  Aligned_cols=81  Identities=31%  Similarity=0.361  Sum_probs=71.8

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|.+++.+++.   +.+|+|+|+|+.+++.|++|+..+++.++++++++|+.+...  .++||+|++||
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~~~  152 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALT---GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS--FLKADVVFLSP  152 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGG--GCCCSEEEECC
T ss_pred             CCCEEEECccccCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcc--cCCCCEEEECC
Confidence            4679999999999999999985   489999999999999999999999987679999999977543  37899999999


Q ss_pred             CCCCCC
Q 017476          275 PYIPSD  280 (371)
Q Consensus       275 PYi~~~  280 (371)
                      ||....
T Consensus       153 ~~~~~~  158 (241)
T 3gdh_A          153 PWGGPD  158 (241)
T ss_dssp             CCSSGG
T ss_pred             CcCCcc
Confidence            997643

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.60  E-value=1.5e-14  Score=138.59  Aligned_cols=150  Identities=12%  Similarity=0.126  Sum_probs=108.4

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc---CCCCcEEEEEcCccccccc-CCCceeEE
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY---GLQDIIEIRQGSWFGKLKD-VEGKLSGV  270 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~---gl~~~v~~~~gD~~~~l~~-~~~~fDlI  270 (371)
                      ++.+|||+|||+|.++..+++.. +..+|++||+|+.+++.|++++...   ....+++++.+|+.+.+.. ..++||+|
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI  173 (304)
T 3bwc_A           95 KPERVLIIGGGDGGVLREVLRHG-TVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV  173 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred             CCCeEEEEcCCCCHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence            46799999999999999999853 5679999999999999999987431   2235799999999775432 24789999


Q ss_pred             EEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCc----CcHHHHHHHHhccc
Q 017476          271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGE----KQCKFLKNYLENDS  346 (371)
Q Consensus       271 vsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~----~q~~~v~~~l~~~~  346 (371)
                      ++|+++...              |...+.        ...+++.+.+.|+|||++++.....    ...+.+.+.+++  
T Consensus       174 i~d~~~~~~--------------~~~~l~--------~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~--  229 (304)
T 3bwc_A          174 IIDTTDPAG--------------PASKLF--------GEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRE--  229 (304)
T ss_dssp             EEECC-----------------------C--------CHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHH--
T ss_pred             EECCCCccc--------------cchhhh--------HHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHh--
Confidence            999875311              100000        1367888899999999999987432    134556666664  


Q ss_pred             cCCceeEEEEec----C-CCCceEEEEEe
Q 017476          347 ACSFCNVSIVSD----F-AGIQRFVTGFR  370 (371)
Q Consensus       347 ~~gf~~v~~~~D----l-~g~~R~~~a~~  370 (371)
                       .||..++++..    + .|...|++|.+
T Consensus       230 -~GF~~v~~~~~~vP~yp~g~w~f~~as~  257 (304)
T 3bwc_A          230 -TGFASVQYALMHVPTYPCGSIGTLVCSK  257 (304)
T ss_dssp             -HTCSEEEEEECCCTTSTTSCCEEEEEES
T ss_pred             -CCCCcEEEEEeecccccCcceEEEEEeC
Confidence             67988877643    3 67888888865

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.60  E-value=2.5e-14  Score=145.24  Aligned_cols=141  Identities=15%  Similarity=0.193  Sum_probs=104.2

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|..++.+|+.+++.++|+|+|+|+.+++.+++|++++|+.+ +.++++|..+......+.||.|++||
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~n-v~~~~~D~~~~~~~~~~~fD~Il~D~  195 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISN-VALTHFDGRVFGAAVPEMFDAILLDA  195 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCS-EEEECCCSTTHHHHSTTCEEEEEEEC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEeCCHHHhhhhccccCCEEEECC
Confidence            46799999999999999999987556899999999999999999999999875 99999998764321346899999999


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCC---cH-HHHHHHHHHHhcccccCcEEEEEECC---cCcHHHHHHHHhc
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVD---GL-DYLLHLCNGTASMLKPGGFFAFETNG---EKQCKFLKNYLEN  344 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~d---Gl-~~~~~il~~a~~~LkpgG~lvle~~~---~~q~~~v~~~l~~  344 (371)
                      ||.....+.        ..|.....-..+   .+ ...+.+++.+.++|||||++++.+..   ....+.+..++++
T Consensus       196 PcSg~G~~~--------~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~Ene~vv~~~l~~  264 (479)
T 2frx_A          196 PCSGEGVVR--------KDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKET  264 (479)
T ss_dssp             CCCCGGGGG--------TCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSSTTTHHHHHHHHHH
T ss_pred             CcCCccccc--------CCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcccCHHHHHHHHHH
Confidence            997544322        122111100000   11 23457999999999999999997632   2344556677765

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.60  E-value=8e-14  Score=129.82  Aligned_cols=146  Identities=18%  Similarity=0.170  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcC
Q 017476          176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGS  255 (371)
Q Consensus       176 te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD  255 (371)
                      .+.+.+.+++.+    ...++.+|||+|||+|.++..+++..  +.+|+|+|+|+.+++.|++++...++.++++++.+|
T Consensus        46 ~~~~~~~l~~~~----~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d  119 (273)
T 3bus_A           46 TDRLTDEMIALL----DVRSGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGLANRVTFSYAD  119 (273)
T ss_dssp             HHHHHHHHHHHS----CCCTTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC
T ss_pred             HHHHHHHHHHhc----CCCCCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECc
Confidence            344555555544    33456799999999999999999974  579999999999999999999999988889999999


Q ss_pred             cccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCc---
Q 017476          256 WFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGE---  332 (371)
Q Consensus       256 ~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~---  332 (371)
                      +.+ ++...++||+|+++-.+.              |-+            ....+++.+.+.|||||++++.....   
T Consensus       120 ~~~-~~~~~~~fD~v~~~~~l~--------------~~~------------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~  172 (273)
T 3bus_A          120 AMD-LPFEDASFDAVWALESLH--------------HMP------------DRGRALREMARVLRPGGTVAIADFVLLAP  172 (273)
T ss_dssp             TTS-CCSCTTCEEEEEEESCTT--------------TSS------------CHHHHHHHHHTTEEEEEEEEEEEEEESSC
T ss_pred             ccc-CCCCCCCccEEEEechhh--------------hCC------------CHHHHHHHHHHHcCCCeEEEEEEeeccCC
Confidence            976 333347899999964432              111            12378899999999999999865211   


Q ss_pred             ---------------------CcHHHHHHHHhccccCCceeEEEEe
Q 017476          333 ---------------------KQCKFLKNYLENDSACSFCNVSIVS  357 (371)
Q Consensus       333 ---------------------~q~~~v~~~l~~~~~~gf~~v~~~~  357 (371)
                                           ...+.+.+++++   .||..+++..
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---aGf~~~~~~~  215 (273)
T 3bus_A          173 VEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQ---AELVVTSTVD  215 (273)
T ss_dssp             CCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHH---TTCEEEEEEE
T ss_pred             CChhHHHHHHHHHhhcCccCCCCHHHHHHHHHH---cCCeEEEEEE
Confidence                                 123556667765   7898776543

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.59  E-value=4.2e-14  Score=134.29  Aligned_cols=116  Identities=16%  Similarity=0.104  Sum_probs=93.0

Q ss_pred             CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEE
Q 017476          192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV  271 (371)
Q Consensus       192 ~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIv  271 (371)
                      ...++.+|||+|||+|.++..+++.+ + .+|+|+|+|+.+++.|++++...++.++++++.+|+.+.    .++||+|+
T Consensus        69 ~~~~~~~vLDiGcG~G~~~~~la~~~-~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~fD~v~  142 (302)
T 3hem_A           69 NLEPGMTLLDIGCGWGSTMRHAVAEY-D-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF----DEPVDRIV  142 (302)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHH-C-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC----CCCCSEEE
T ss_pred             CCCCcCEEEEeeccCcHHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc----CCCccEEE
Confidence            34456799999999999999999986 3 799999999999999999999999988899999999654    47999999


Q ss_pred             EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC
Q 017476          272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN  330 (371)
Q Consensus       272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~  330 (371)
                      ++..+.              |-|...   ...|.+.+..+++.+.+.|||||++++...
T Consensus       143 ~~~~~~--------------~~~d~~---~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  184 (302)
T 3hem_A          143 SLGAFE--------------HFADGA---GDAGFERYDTFFKKFYNLTPDDGRMLLHTI  184 (302)
T ss_dssp             EESCGG--------------GTTCCS---SCCCTTHHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred             EcchHH--------------hcCccc---cccchhHHHHHHHHHHHhcCCCcEEEEEEE
Confidence            964321              111100   011345677899999999999999999763

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.59  E-value=1.8e-14  Score=139.23  Aligned_cols=140  Identities=16%  Similarity=0.119  Sum_probs=100.7

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC----------CCCcEEEEEcCccccccc-
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG----------LQDIIEIRQGSWFGKLKD-  262 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~g----------l~~~v~~~~gD~~~~l~~-  262 (371)
                      .++.+|||+|||+|.+++.+++.+++..+|+|+|+++.+++.|++|+...+          ..++++++.+|+.+.... 
T Consensus       104 ~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~  183 (336)
T 2b25_A          104 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDI  183 (336)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccccc
Confidence            356799999999999999999986666899999999999999999998643          235699999999775422 


Q ss_pred             CCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHH
Q 017476          263 VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYL  342 (371)
Q Consensus       263 ~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l  342 (371)
                      ..++||+|++|+|-..                               .+++.+.+.|+|||.+++......+...+.+.+
T Consensus       184 ~~~~fD~V~~~~~~~~-------------------------------~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l  232 (336)
T 2b25_A          184 KSLTFDAVALDMLNPH-------------------------------VTLPVFYPHLKHGGVCAVYVVNITQVIELLDGI  232 (336)
T ss_dssp             ----EEEEEECSSSTT-------------------------------TTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHH
T ss_pred             CCCCeeEEEECCCCHH-------------------------------HHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHH
Confidence            2357999999865210                               256778899999999999886555555555555


Q ss_pred             hccccCCceeEEEEecCCCCceE
Q 017476          343 ENDSACSFCNVSIVSDFAGIQRF  365 (371)
Q Consensus       343 ~~~~~~gf~~v~~~~Dl~g~~R~  365 (371)
                      .+. ..+|....+.....+....
T Consensus       233 ~~~-~~~~~~~~~~~~~~~~w~~  254 (336)
T 2b25_A          233 RTC-ELALSCEKISEVIVRDWLV  254 (336)
T ss_dssp             HHH-TCCEEEEEEECCCCCCEEE
T ss_pred             Hhc-CCCcccceEEEecccceEE
Confidence            432 2446555555444444333

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=99.59  E-value=6.3e-14  Score=144.19  Aligned_cols=170  Identities=16%  Similarity=0.148  Sum_probs=116.4

Q ss_pred             CcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhC--CCcEEEEEeCCHHHHHHHHHHHHHcCC
Q 017476          168 GVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG--SKGSIIAVDLNPLAAAVAAFNAQRYGL  245 (371)
Q Consensus       168 ~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~--~~~~V~gvDis~~al~~A~~n~~~~gl  245 (371)
                      ..+.|++.++.+++.+....    ....+.+|+|+|||||.+.+.+++.+.  ...+++|+|+++.++.+|+.|+..+|+
T Consensus       198 ~fyTP~~Vv~lmv~ll~~~~----~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi  273 (542)
T 3lkd_A          198 EFYTPQPVAKLMTQIAFLGR----EDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGV  273 (542)
T ss_dssp             SCCCCHHHHHHHHHHHHTTC----TTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             eecccHHHHHHHHHHHhccc----CCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCC
Confidence            35679998888888765321    123466999999999999999998752  256899999999999999999999998


Q ss_pred             C-CcEEEEEcCcccc--cccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccc-c
Q 017476          246 Q-DIIEIRQGSWFGK--LKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLK-P  321 (371)
Q Consensus       246 ~-~~v~~~~gD~~~~--l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~Lk-p  321 (371)
                      . +++.+.++|.+..  ......+||+||+||||..............+|.+.-.+....+  ..+ .++..+.++|+ +
T Consensus       274 ~~~~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~--~~~-~Fl~~~l~~Lk~~  350 (542)
T 3lkd_A          274 PIENQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSK--ADF-AFLLHGYYHLKQD  350 (542)
T ss_dssp             CGGGEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTC--CHH-HHHHHHHHTBCTT
T ss_pred             CcCccceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCch--hhH-HHHHHHHHHhCCC
Confidence            5 4689999998864  11224689999999999843221110001112211100111111  112 57788889999 9


Q ss_pred             CcEEEEEECCc-----CcHHHHHHHHhc
Q 017476          322 GGFFAFETNGE-----KQCKFLKNYLEN  344 (371)
Q Consensus       322 gG~lvle~~~~-----~q~~~v~~~l~~  344 (371)
                      ||++++.++..     .....+++.|.+
T Consensus       351 gGr~a~VlP~g~Lf~~~~~~~iRk~Lle  378 (542)
T 3lkd_A          351 NGVMAIVLPHGVLFRGNAEGTIRKALLE  378 (542)
T ss_dssp             TCEEEEEEETHHHHCCTHHHHHHHHHHH
T ss_pred             ceeEEEEecchHhhCCchhHHHHHHHHh
Confidence            99999888532     124668877765

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.59  E-value=1.1e-14  Score=131.05  Aligned_cols=121  Identities=14%  Similarity=0.118  Sum_probs=97.5

Q ss_pred             ccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEE
Q 017476          172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEI  251 (371)
Q Consensus       172 Prp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~  251 (371)
                      ..+.+..++..+....       ++.+|||+|||+|..++.+++.++++.+|+++|+|+.+++.|++|++..++.+++++
T Consensus        40 ~~~~~~~~l~~l~~~~-------~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~  112 (210)
T 3c3p_A           40 VDRQTGRLLYLLARIK-------QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVEL  112 (210)
T ss_dssp             CCHHHHHHHHHHHHHH-------CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEE
T ss_pred             cCHHHHHHHHHHHHhh-------CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEE
Confidence            4566666776665543       356999999999999999999763378999999999999999999999998888999


Q ss_pred             EEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          252 RQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       252 ~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      +++|+.+.++...+ ||+|++|.+.                             ..+..+++.+.++|+|||++++..
T Consensus       113 ~~~d~~~~~~~~~~-fD~v~~~~~~-----------------------------~~~~~~l~~~~~~LkpgG~lv~~~  160 (210)
T 3c3p_A          113 QVGDPLGIAAGQRD-IDILFMDCDV-----------------------------FNGADVLERMNRCLAKNALLIAVN  160 (210)
T ss_dssp             EESCHHHHHTTCCS-EEEEEEETTT-----------------------------SCHHHHHHHHGGGEEEEEEEEEES
T ss_pred             EEecHHHHhccCCC-CCEEEEcCCh-----------------------------hhhHHHHHHHHHhcCCCeEEEEEC
Confidence            99999775544446 9999997331                             013478888999999999999864

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.59  E-value=1.5e-14  Score=144.79  Aligned_cols=141  Identities=21%  Similarity=0.205  Sum_probs=109.2

Q ss_pred             ceeeEeecc----cccceeeEeeCCcccc--cchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCc
Q 017476          148 PFQYLVGCE----HWRDLVLSVEEGVFIP--RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKG  221 (371)
Q Consensus       148 P~~yi~g~~----~f~~~~~~v~~~vliP--rp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~  221 (371)
                      ....+.|..    .+.++.|.++++.|+.  +..++.+++.+.+ +      .++.+|||+|||+|.+++.+|+.   ..
T Consensus       244 ~~~~l~G~~~i~e~~~g~~f~~~~~~F~q~n~~~~e~l~~~~~~-~------~~~~~VLDlgcG~G~~sl~la~~---~~  313 (425)
T 2jjq_A          244 DIERFWGKEFIRERLDDVDYLIHPNSFFQTNSYQAVNLVRKVSE-L------VEGEKILDMYSGVGTFGIYLAKR---GF  313 (425)
T ss_dssp             EEEEEEECSCEEEEETTEEEEECTTSCCCSBHHHHHHHHHHHHH-H------CCSSEEEEETCTTTHHHHHHHHT---TC
T ss_pred             eEEEEECCCeEEEEECCEEEEEccccccccCHHHHHHHHHHhhc-c------CCCCEEEEeeccchHHHHHHHHc---CC
Confidence            344555643    2458899999999995  4667888888776 3      13569999999999999999985   46


Q ss_pred             EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCC
Q 017476          222 SIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGG  301 (371)
Q Consensus       222 ~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg  301 (371)
                      +|+|+|+|+.+++.|++|+..+++.  ++++++|+.+.+.   .+||+|++|||+....      .              
T Consensus       314 ~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~~d~~~~~~---~~fD~Vv~dPPr~g~~------~--------------  368 (425)
T 2jjq_A          314 NVKGFDSNEFAIEMARRNVEINNVD--AEFEVASDREVSV---KGFDTVIVDPPRAGLH------P--------------  368 (425)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHTCC--EEEEECCTTTCCC---TTCSEEEECCCTTCSC------H--------------
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChHHcCc---cCCCEEEEcCCccchH------H--------------
Confidence            9999999999999999999999986  9999999987643   2899999999974211      0              


Q ss_pred             CCcHHHHHHHHHHHhcccccCcEEEEEECCc
Q 017476          302 VDGLDYLLHLCNGTASMLKPGGFFAFETNGE  332 (371)
Q Consensus       302 ~dGl~~~~~il~~a~~~LkpgG~lvle~~~~  332 (371)
                              .+++.+ ..|+|||++++.++..
T Consensus       369 --------~~~~~l-~~l~p~givyvsc~p~  390 (425)
T 2jjq_A          369 --------RLVKRL-NREKPGVIVYVSCNPE  390 (425)
T ss_dssp             --------HHHHHH-HHHCCSEEEEEESCHH
T ss_pred             --------HHHHHH-HhcCCCcEEEEECChH
Confidence                    233333 2489999999998543

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.59  E-value=3.7e-14  Score=142.95  Aligned_cols=148  Identities=20%  Similarity=0.224  Sum_probs=108.0

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCC-CceeEEEE
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVE-GKLSGVVS  272 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~-~~fDlIvs  272 (371)
                      .++.+|||+|||+|..+..++..++..++|+|+|+|+.+++.+++|++++|+.+ ++++++|+.+...... ++||+|++
T Consensus       258 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~fD~Vl~  336 (450)
T 2yxl_A          258 KPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKI-VKPLVKDARKAPEIIGEEVADKVLL  336 (450)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCS-EEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc-EEEEEcChhhcchhhccCCCCEEEE
Confidence            356799999999999999999986333899999999999999999999999864 9999999876432222 67999999


Q ss_pred             cCCCCCCCCcccchhhhcccCccccccCCCCcH---HHH-HHHHHHHhcccccCcEEEEEECCcC---cHHHHHHHHhcc
Q 017476          273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGL---DYL-LHLCNGTASMLKPGGFFAFETNGEK---QCKFLKNYLEND  345 (371)
Q Consensus       273 NPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl---~~~-~~il~~a~~~LkpgG~lvle~~~~~---q~~~v~~~l~~~  345 (371)
                      ||||...+.+.        +.|........+.+   ..+ ..+++.+.++|||||++++.+....   ..+.+..++++.
T Consensus       337 D~Pcsg~g~~~--------~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l~~~  408 (450)
T 2yxl_A          337 DAPCTSSGTIG--------KNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNVH  408 (450)
T ss_dssp             ECCCCCGGGTT--------TSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHC
T ss_pred             cCCCCCCeeec--------cChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhC
Confidence            99997654432        22322222122222   222 5789999999999999998764332   345667777753


Q ss_pred             ccCCcee
Q 017476          346 SACSFCN  352 (371)
Q Consensus       346 ~~~gf~~  352 (371)
                        .+|..
T Consensus       409 --~~~~~  413 (450)
T 2yxl_A          409 --PEFKL  413 (450)
T ss_dssp             --SSCEE
T ss_pred             --CCCEE
Confidence              35654

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.58  E-value=3.5e-14  Score=142.16  Aligned_cols=163  Identities=16%  Similarity=0.186  Sum_probs=119.9

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc-CCCceeEEEE
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VEGKLSGVVS  272 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~-~~~~fDlIvs  272 (371)
                      .++.+|||+|||+|..+..+++.. ++++|+|+|+|+.+++.+++|++++|+.  ++++++|+.+.... ..++||+|++
T Consensus       245 ~~g~~VLDlgaG~G~~t~~la~~~-~~~~v~a~D~~~~~l~~~~~~~~~~g~~--~~~~~~D~~~~~~~~~~~~fD~Vl~  321 (429)
T 1sqg_A          245 QNGEHILDLCAAPGGKTTHILEVA-PEAQVVAVDIDEQRLSRVYDNLKRLGMK--ATVKQGDGRYPSQWCGEQQFDRILL  321 (429)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHC-TTCEEEEEESSTTTHHHHHHHHHHTTCC--CEEEECCTTCTHHHHTTCCEEEEEE
T ss_pred             CCcCeEEEECCCchHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHHHHHcCCC--eEEEeCchhhchhhcccCCCCEEEE
Confidence            356799999999999999999985 5689999999999999999999999974  78999998764321 1368999999


Q ss_pred             cCCCCCCCCcccchhhhcccCccccccCCCCcH----HHHHHHHHHHhcccccCcEEEEEECC---cCcHHHHHHHHhcc
Q 017476          273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGL----DYLLHLCNGTASMLKPGGFFAFETNG---EKQCKFLKNYLEND  345 (371)
Q Consensus       273 NPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl----~~~~~il~~a~~~LkpgG~lvle~~~---~~q~~~v~~~l~~~  345 (371)
                      ||||...+.+.        +.|..........+    .....+++.+.++|||||++++.+..   ....+.+..++++.
T Consensus       322 D~Pcsg~g~~~--------~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~~v~~~l~~~  393 (429)
T 1sqg_A          322 DAPCSATGVIR--------RHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRT  393 (429)
T ss_dssp             ECCCCCGGGTT--------TCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHC
T ss_pred             eCCCCcccccC--------CCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHHHHHHHHHhC
Confidence            99997654432        22332222122222    23468999999999999999997732   23455677788763


Q ss_pred             ccCCcee----------EEEEecCCCCceEEEEE
Q 017476          346 SACSFCN----------VSIVSDFAGIQRFVTGF  369 (371)
Q Consensus       346 ~~~gf~~----------v~~~~Dl~g~~R~~~a~  369 (371)
                        .+|..          ++++++..|.+-|.+|+
T Consensus       394 --~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~  425 (429)
T 1sqg_A          394 --ADAELCETGTPEQPGKQNLPGAEEGDGFFYAK  425 (429)
T ss_dssp             --TTCEECSSBCSSSBSEEECCCTTSCCSEEEEE
T ss_pred             --CCCEEeCCCCCCCCeEEECCCCCCCCceEEEE
Confidence              44543          46777777778877775

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.58  E-value=2.6e-14  Score=128.95  Aligned_cols=129  Identities=16%  Similarity=0.099  Sum_probs=97.3

Q ss_pred             ccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC----
Q 017476          172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQD----  247 (371)
Q Consensus       172 Prp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~----  247 (371)
                      |.+..+...+.+.+.+ ..   .++.+|||+|||+|.++..+++.. +..+|+|+|+|+.+++.|++|+...++.+    
T Consensus        10 p~~~~~~~~~~l~~~l-~~---~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~   84 (217)
T 3jwh_A           10 PISLNQQRMNGVVAAL-KQ---SNARRVIDLGCGQGNLLKILLKDS-FFEQITGVDVSYRSLEIAQERLDRLRLPRNQWE   84 (217)
T ss_dssp             -CCHHHHHHHHHHHHH-HH---TTCCEEEEETCTTCHHHHHHHHCT-TCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHT
T ss_pred             CCCHHHHHHHHHHHHH-Hh---cCCCEEEEeCCCCCHHHHHHHhhC-CCCEEEEEECCHHHHHHHHHHHHHhcCCcccCc
Confidence            4456666777777766 21   245699999999999999999863 66799999999999999999998887764    


Q ss_pred             cEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEE
Q 017476          248 IIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF  327 (371)
Q Consensus       248 ~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvl  327 (371)
                      +++++++|+... ....++||+|+++-.+              .|-+          -..+..+++.+.+.|||||++++
T Consensus        85 ~v~~~~~d~~~~-~~~~~~fD~v~~~~~l--------------~~~~----------~~~~~~~l~~~~~~LkpgG~li~  139 (217)
T 3jwh_A           85 RLQLIQGALTYQ-DKRFHGYDAATVIEVI--------------EHLD----------LSRLGAFERVLFEFAQPKIVIVT  139 (217)
T ss_dssp             TEEEEECCTTSC-CGGGCSCSEEEEESCG--------------GGCC----------HHHHHHHHHHHHTTTCCSEEEEE
T ss_pred             ceEEEeCCcccc-cccCCCcCEEeeHHHH--------------HcCC----------HHHHHHHHHHHHHHcCCCEEEEE
Confidence            699999998532 3224689999995321              2211          12345789999999999998877


Q ss_pred             EEC
Q 017476          328 ETN  330 (371)
Q Consensus       328 e~~  330 (371)
                      ..+
T Consensus       140 ~~~  142 (217)
T 3jwh_A          140 TPN  142 (217)
T ss_dssp             EEB
T ss_pred             ccC
Confidence            653

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.58  E-value=3.7e-14  Score=129.07  Aligned_cols=149  Identities=16%  Similarity=0.138  Sum_probs=108.3

Q ss_pred             HHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcc
Q 017476          178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF  257 (371)
Q Consensus       178 ~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~  257 (371)
                      .+.+.+.+.+ .  ...++.+|||+|||+|.++..+++.+ ++.+|+|+|+|+.+++.|++++...+   +++++++|+.
T Consensus        30 ~~~~~~~~~~-~--~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~  102 (234)
T 3dtn_A           30 DFYGVSVSIA-S--VDTENPDILDLGAGTGLLSAFLMEKY-PEATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYS  102 (234)
T ss_dssp             HHHHHHHHTC-C--CSCSSCEEEEETCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTT
T ss_pred             HHHHHHHHHh-h--cCCCCCeEEEecCCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchh
Confidence            3345555544 2  13356799999999999999999985 78899999999999999999876554   5999999997


Q ss_pred             cccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCc-----
Q 017476          258 GKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGE-----  332 (371)
Q Consensus       258 ~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~-----  332 (371)
                      +....  ++||+|+++..+.              |-+          -.....+++.+.+.|+|||++++.....     
T Consensus       103 ~~~~~--~~fD~v~~~~~l~--------------~~~----------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~  156 (234)
T 3dtn_A          103 KYDFE--EKYDMVVSALSIH--------------HLE----------DEDKKELYKRSYSILKESGIFINADLVHGETAF  156 (234)
T ss_dssp             TCCCC--SCEEEEEEESCGG--------------GSC----------HHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHH
T ss_pred             ccCCC--CCceEEEEeCccc--------------cCC----------HHHHHHHHHHHHHhcCCCcEEEEEEecCCCChh
Confidence            64332  7899999975431              111          1122368899999999999999865211     


Q ss_pred             -----------------------------------CcHHHHHHHHhccccCCceeEEEEecCCCC
Q 017476          333 -----------------------------------KQCKFLKNYLENDSACSFCNVSIVSDFAGI  362 (371)
Q Consensus       333 -----------------------------------~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~  362 (371)
                                                         ...+++.+++++   .||..|+++....+.
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~---aGF~~v~~~~~~~~~  218 (234)
T 3dtn_A          157 IENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNWLKE---AGFRDVSCIYKYYQF  218 (234)
T ss_dssp             HHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHHHHHHHH---TTCEEEEEEEEETTE
T ss_pred             hhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHHHHHHHH---cCCCceeeeeeecce
Confidence                                               122455667775   899999887655543

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.58  E-value=3.8e-14  Score=132.81  Aligned_cols=132  Identities=16%  Similarity=0.180  Sum_probs=103.9

Q ss_pred             CCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-C-CCCcEEEEEcCcccccccCCCceeEE
Q 017476          193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY-G-LQDIIEIRQGSWFGKLKDVEGKLSGV  270 (371)
Q Consensus       193 ~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~-g-l~~~v~~~~gD~~~~l~~~~~~fDlI  270 (371)
                      ..++.+|||+|||+|.++..+++.+++..+|+++|+++.+++.|++|+..+ | +.++++++.+|+.+... ..+.||+|
T Consensus        97 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~-~~~~~D~v  175 (280)
T 1i9g_A           97 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL-PDGSVDRA  175 (280)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC-CTTCEEEE
T ss_pred             CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC-CCCceeEE
Confidence            345679999999999999999997666789999999999999999999887 5 44569999999976421 24689999


Q ss_pred             EEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCc
Q 017476          271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSF  350 (371)
Q Consensus       271 vsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf  350 (371)
                      ++|+|..                               ..+++.+.+.|+|||++++......+...+.+.+.+.  .+|
T Consensus       176 ~~~~~~~-------------------------------~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~--~~f  222 (280)
T 1i9g_A          176 VLDMLAP-------------------------------WEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAK--QCW  222 (280)
T ss_dssp             EEESSCG-------------------------------GGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHH--SSB
T ss_pred             EECCcCH-------------------------------HHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhc--CCc
Confidence            9987621                               0467778899999999999996656666666666642  568


Q ss_pred             eeEEEEec
Q 017476          351 CNVSIVSD  358 (371)
Q Consensus       351 ~~v~~~~D  358 (371)
                      ..+++...
T Consensus       223 ~~~~~~~~  230 (280)
T 1i9g_A          223 TEPRAWET  230 (280)
T ss_dssp             CCCEEECC
T ss_pred             CCcEEEEE
Confidence            77666543

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.58  E-value=1.4e-14  Score=143.48  Aligned_cols=118  Identities=24%  Similarity=0.320  Sum_probs=95.5

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccC---CCceeEEE
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV---EGKLSGVV  271 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~---~~~fDlIv  271 (371)
                      ++.+|||+|||+|.+++.+++.  +..+|+|+|+|+.+++.|++|+..+++.++++++++|+.+.+...   .++||+|+
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~--g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi  294 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIA--GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV  294 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEE
Confidence            4679999999999999999985  346999999999999999999999998767999999997754321   36899999


Q ss_pred             EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC
Q 017476          272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG  331 (371)
Q Consensus       272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~  331 (371)
                      +||||......     .+            .+....+..++..+.+.|+|||++++....
T Consensus       295 ~dpP~~~~~~~-----~~------------~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  337 (396)
T 2as0_A          295 LDPPAFVQHEK-----DL------------KAGLRAYFNVNFAGLNLVKDGGILVTCSCS  337 (396)
T ss_dssp             ECCCCSCSSGG-----GH------------HHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred             ECCCCCCCCHH-----HH------------HHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            99998653321     11            012456778999999999999998887743

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.57  E-value=1e-13  Score=133.15  Aligned_cols=146  Identities=16%  Similarity=0.092  Sum_probs=112.2

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      .++.+|||+|||+|.++..+++.+ ++.+++++|++ .+++.|++++...++.++++++.+|+++. + ..+.||+|+++
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~~~~D~v~~~  239 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHN-PNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEV-D-YGNDYDLVLLP  239 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTS-C-CCSCEEEEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccC-C-CCCCCcEEEEc
Confidence            356799999999999999999986 78899999999 99999999999999888899999999863 1 12459999994


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCc---------------------
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGE---------------------  332 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~---------------------  332 (371)
                      -..              .|-+          -+....+++.+.+.|+|||++++.....                     
T Consensus       240 ~~l--------------~~~~----------~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~  295 (335)
T 2r3s_A          240 NFL--------------HHFD----------VATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATT  295 (335)
T ss_dssp             SCG--------------GGSC----------HHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHS
T ss_pred             chh--------------ccCC----------HHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeC
Confidence            221              1110          1334578999999999999877743211                     


Q ss_pred             -----CcHHHHHHHHhccccCCceeEEEEecCCCCceEEEEEeC
Q 017476          333 -----KQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFRQ  371 (371)
Q Consensus       333 -----~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~~~  371 (371)
                           ...+++.+++++   .||..+++. +..|..+++.++++
T Consensus       296 ~~~~~~t~~~~~~ll~~---aGf~~~~~~-~~~~~~~~i~~~~~  335 (335)
T 2r3s_A          296 PNGDAYTFAEYESMFSN---AGFSHSQLH-SLPTTQQQVIVAYK  335 (335)
T ss_dssp             SSCCCCCHHHHHHHHHH---TTCSEEEEE-CCTTSSSEEEEEEC
T ss_pred             CCCCcCCHHHHHHHHHH---CCCCeeeEE-ECCCCceeEEEecC
Confidence                 125667777775   789888875 46677788888765

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.57  E-value=1.5e-14  Score=133.53  Aligned_cols=137  Identities=15%  Similarity=0.154  Sum_probs=98.7

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH------cCCCCcEEEEEcCcccccc--cCCCc
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR------YGLQDIIEIRQGSWFGKLK--DVEGK  266 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~------~gl~~~v~~~~gD~~~~l~--~~~~~  266 (371)
                      ++.+|||+|||+|.+++.+|+.. ++.+|+|||+|+.+++.|++|++.      .++. +++++++|+.+.++  ...++
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~-p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~-nv~~~~~d~~~~l~~~~~~~~  123 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLF-PDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQ-NIACLRSNAMKHLPNFFYKGQ  123 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGS-TTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCT-TEEEEECCTTTCHHHHCCTTC
T ss_pred             CCCeEEEEccCCcHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCC-eEEEEECcHHHhhhhhCCCcC
Confidence            35689999999999999999975 788999999999999999999865      3444 59999999976443  22478


Q ss_pred             eeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccc
Q 017476          267 LSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDS  346 (371)
Q Consensus       267 fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~  346 (371)
                      ||.|++|.|-.....         +|.-+. +        ....+++.+.++|+|||.+++.+......+.+.+.+.+. 
T Consensus       124 ~D~v~~~~~dp~~k~---------~h~krr-~--------~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l~~~-  184 (235)
T 3ckk_A          124 LTKMFFLFPDPHFKR---------TKHKWR-I--------ISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEH-  184 (235)
T ss_dssp             EEEEEEESCC---------------------C--------CCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTS-
T ss_pred             eeEEEEeCCCchhhh---------hhhhhh-h--------hhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHHHHC-
Confidence            999998754211100         110000 0        012688889999999999999996655667777777763 


Q ss_pred             cCCceeE
Q 017476          347 ACSFCNV  353 (371)
Q Consensus       347 ~~gf~~v  353 (371)
                       ++|..+
T Consensus       185 -~~f~~~  190 (235)
T 3ckk_A          185 -PLFERV  190 (235)
T ss_dssp             -TTEEEE
T ss_pred             -CCcccc
Confidence             456554

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.57  E-value=5.3e-14  Score=134.43  Aligned_cols=132  Identities=19%  Similarity=0.185  Sum_probs=103.4

Q ss_pred             CCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEE
Q 017476          193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS  272 (371)
Q Consensus       193 ~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvs  272 (371)
                      ..++.+|||+|||+|.++..+++.+  +.+|+|+|+|+.+++.|++|+..+++.++++++.+|+.+. +...++||+|++
T Consensus       115 ~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~V~~  191 (312)
T 3vc1_A          115 AGPDDTLVDAGCGRGGSMVMAHRRF--GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDT-PFDKGAVTASWN  191 (312)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-CCCTTCEEEEEE
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcC-CCCCCCEeEEEE
Confidence            3456799999999999999999975  5799999999999999999999999988899999999753 323479999999


Q ss_pred             cCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCc--------------------
Q 017476          273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGE--------------------  332 (371)
Q Consensus       273 NPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~--------------------  332 (371)
                      +-.              ..|-            + ...+++.+.+.|||||++++.....                    
T Consensus       192 ~~~--------------l~~~------------~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (312)
T 3vc1_A          192 NES--------------TMYV------------D-LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFEC  244 (312)
T ss_dssp             ESC--------------GGGS------------C-HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTC
T ss_pred             CCc--------------hhhC------------C-HHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcC
Confidence            522              1111            0 4478899999999999999865211                    


Q ss_pred             --CcHHHHHHHHhccccCCceeEEEEe
Q 017476          333 --KQCKFLKNYLENDSACSFCNVSIVS  357 (371)
Q Consensus       333 --~q~~~v~~~l~~~~~~gf~~v~~~~  357 (371)
                        ...+.+.+++++   .||..+++..
T Consensus       245 ~~~s~~~~~~~l~~---aGf~~~~~~~  268 (312)
T 3vc1_A          245 NIHSRREYLRAMAD---NRLVPHTIVD  268 (312)
T ss_dssp             CCCBHHHHHHHHHT---TTEEEEEEEE
T ss_pred             CCCCHHHHHHHHHH---CCCEEEEEEe
Confidence              134566777775   7898776653

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.57  E-value=1.7e-14  Score=141.77  Aligned_cols=108  Identities=18%  Similarity=0.266  Sum_probs=88.9

Q ss_pred             eeeEeeCCccccc--chHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476          161 LVLSVEEGVFIPR--PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       161 ~~~~v~~~vliPr--p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~  238 (371)
                      +.|.++++.|++.  ..++.+++++.+.+ .   . .+.+|||+|||+|.+++.+|+.   ..+|+|+|+|+.+++.|++
T Consensus       182 ~~~~~~~~~F~Q~n~~~~~~l~~~~~~~~-~---~-~~~~vLDl~cG~G~~~l~la~~---~~~V~gvd~~~~ai~~a~~  253 (369)
T 3bt7_A          182 MIYRQVENSFTQPNAAMNIQMLEWALDVT-K---G-SKGDLLELYCGNGNFSLALARN---FDRVLATEIAKPSVAAAQY  253 (369)
T ss_dssp             CEEEEETTSCCCSBHHHHHHHHHHHHHHT-T---T-CCSEEEEESCTTSHHHHHHGGG---SSEEEEECCCHHHHHHHHH
T ss_pred             EEEEECCCCeecCCHHHHHHHHHHHHHHh-h---c-CCCEEEEccCCCCHHHHHHHhc---CCEEEEEECCHHHHHHHHH
Confidence            7788999999853  55688888888876 2   1 2468999999999999999884   3699999999999999999


Q ss_pred             HHHHcCCCCcEEEEEcCcccccccCC---------------CceeEEEEcCCCC
Q 017476          239 NAQRYGLQDIIEIRQGSWFGKLKDVE---------------GKLSGVVSNPPYI  277 (371)
Q Consensus       239 n~~~~gl~~~v~~~~gD~~~~l~~~~---------------~~fDlIvsNPPYi  277 (371)
                      |++.+++. +++++.+|+.+.+....               .+||+|+.|||+.
T Consensus       254 n~~~ng~~-~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~  306 (369)
T 3bt7_A          254 NIAANHID-NVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRS  306 (369)
T ss_dssp             HHHHTTCC-SEEEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTT
T ss_pred             HHHHcCCC-ceEEEECCHHHHHHHHhhccccccccccccccCCCCEEEECcCcc
Confidence            99999985 59999999876533211               2799999999985

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.57  E-value=7.7e-14  Score=125.84  Aligned_cols=127  Identities=17%  Similarity=0.064  Sum_probs=94.3

Q ss_pred             chHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC----cE
Q 017476          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQD----II  249 (371)
Q Consensus       174 p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~----~v  249 (371)
                      +..+...+.+.+.+ ..   .++.+|||+|||+|.++..+++.. +..+|+|+|+|+.+++.|++++...++.+    ++
T Consensus        12 ~~~~~~~~~l~~~l-~~---~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v   86 (219)
T 3jwg_A           12 NLNQQRLGTVVAVL-KS---VNAKKVIDLGCGEGNLLSLLLKDK-SFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRI   86 (219)
T ss_dssp             CHHHHHHHHHHHHH-HH---TTCCEEEEETCTTCHHHHHHHTST-TCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTE
T ss_pred             cchHHHHHHHHHHH-hh---cCCCEEEEecCCCCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHHHhhccccccCcce
Confidence            34455566666655 21   246799999999999999999863 66799999999999999999998777764    69


Q ss_pred             EEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          250 EIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       250 ~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      +++++|+.. .....++||+|+++-.              ..|-+          -.....+++.+.+.|||||+++...
T Consensus        87 ~~~~~d~~~-~~~~~~~fD~V~~~~~--------------l~~~~----------~~~~~~~l~~~~~~LkpgG~~i~~~  141 (219)
T 3jwg_A           87 SLFQSSLVY-RDKRFSGYDAATVIEV--------------IEHLD----------ENRLQAFEKVLFEFTRPQTVIVSTP  141 (219)
T ss_dssp             EEEECCSSS-CCGGGTTCSEEEEESC--------------GGGCC----------HHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred             EEEeCcccc-cccccCCCCEEEEHHH--------------HHhCC----------HHHHHHHHHHHHHhhCCCEEEEEcc
Confidence            999999854 3323478999999522              12211          1234578999999999999777655


Q ss_pred             C
Q 017476          330 N  330 (371)
Q Consensus       330 ~  330 (371)
                      +
T Consensus       142 ~  142 (219)
T 3jwg_A          142 N  142 (219)
T ss_dssp             B
T ss_pred             c
Confidence            3

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.57  E-value=2e-14  Score=135.81  Aligned_cols=152  Identities=15%  Similarity=0.176  Sum_probs=108.2

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc--CC-CCcEEEEEcCcccccccCCCceeEEE
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY--GL-QDIIEIRQGSWFGKLKDVEGKLSGVV  271 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~--gl-~~~v~~~~gD~~~~l~~~~~~fDlIv  271 (371)
                      .+.+|||+|||+|.++..+++.. +..+|++||+++.+++.|++|+...  ++ .++++++.+|..+.+....++||+|+
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii  153 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHhCC-CCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence            46799999999999999999853 5679999999999999999998652  34 35799999999876554457899999


Q ss_pred             EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCc-CcHHHHHHHHhccccCCc
Q 017476          272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGE-KQCKFLKNYLENDSACSF  350 (371)
Q Consensus       272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~-~q~~~v~~~l~~~~~~gf  350 (371)
                      +|+|+.... ..             .+.        ...+++.+.+.|+|||++++..... ...+.+..+.+.. ..-|
T Consensus       154 ~d~~~~~~~-~~-------------~l~--------~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l-~~~F  210 (275)
T 1iy9_A          154 VDSTEPVGP-AV-------------NLF--------TKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDV-KEIF  210 (275)
T ss_dssp             ESCSSCCSC-CC-------------CCS--------TTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHH-HTTC
T ss_pred             ECCCCCCCc-ch-------------hhh--------HHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHH-HHhC
Confidence            999863211 00             000        1267788889999999999997432 2333333333322 1348


Q ss_pred             eeEEEEec----C-CCCceEEEEEe
Q 017476          351 CNVSIVSD----F-AGIQRFVTGFR  370 (371)
Q Consensus       351 ~~v~~~~D----l-~g~~R~~~a~~  370 (371)
                      ..+..+.-    + .|..-|+++.|
T Consensus       211 ~~v~~~~~~vp~~~~g~w~~~~ask  235 (275)
T 1iy9_A          211 PITKLYTANIPTYPSGLWTFTIGSK  235 (275)
T ss_dssp             SEEEEEEECCTTSGGGCEEEEEEES
T ss_pred             CCeEEEEEecCcccCcceEEEEeeC
Confidence            77776642    2 56777887765

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.57  E-value=6.9e-15  Score=141.68  Aligned_cols=191  Identities=14%  Similarity=0.161  Sum_probs=122.0

Q ss_pred             CCceeeEeec-ccccceeeEeeCCcccccch----HHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCC
Q 017476          146 RKPFQYLVGC-EHWRDLVLSVEEGVFIPRPE----TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSK  220 (371)
Q Consensus       146 ~~P~~yi~g~-~~f~~~~~~v~~~vliPrp~----te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~  220 (371)
                      .-|.|+|.-. ...++..+.++..+.+++++    ++.++...+...      ..+.+|||+|||+|.++..+++.. +.
T Consensus        60 ~s~~q~i~v~~~~~~g~~l~ldg~~q~~~~de~~Y~e~l~~l~l~~~------~~~~~VLdIG~G~G~~~~~l~~~~-~~  132 (314)
T 2b2c_A           60 KSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLPMFAH------PDPKRVLIIGGGDGGILREVLKHE-SV  132 (314)
T ss_dssp             ECSSCEEEEEEETTTEEEEEETTEEEEESSSSSHHHHHHHHHHHHHS------SSCCEEEEESCTTSHHHHHHTTCT-TC
T ss_pred             ECCCCCEEEEEcCCCCEEEEECCEeecCCcchhHHHHHHHHHHHhhC------CCCCEEEEEcCCcCHHHHHHHHcC-CC
Confidence            3566666542 22235667777666566554    444443322111      235799999999999999999863 67


Q ss_pred             cEEEEEeCCHHHHHHHHHHHHHc--CC-CCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCcccc
Q 017476          221 GSIIAVDLNPLAAAVAAFNAQRY--GL-QDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLA  297 (371)
Q Consensus       221 ~~V~gvDis~~al~~A~~n~~~~--gl-~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~a  297 (371)
                      .+|++||+|+.+++.|++|+...  ++ .++++++.+|+.+.+....++||+|++|++...              .|.  
T Consensus       133 ~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~--------------~~~--  196 (314)
T 2b2c_A          133 EKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITDSSDPV--------------GPA--  196 (314)
T ss_dssp             CEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEECCC----------------------
T ss_pred             CEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEEcCCCCC--------------Ccc--
Confidence            89999999999999999998654  33 457999999997765434578999999985310              000  


Q ss_pred             ccCCCCcHHHH-HHHHHHHhcccccCcEEEEEECCc-CcHH---HHHHHHhccccCCceeEEEEec----C-CCCceEEE
Q 017476          298 LDGGVDGLDYL-LHLCNGTASMLKPGGFFAFETNGE-KQCK---FLKNYLENDSACSFCNVSIVSD----F-AGIQRFVT  367 (371)
Q Consensus       298 L~gg~dGl~~~-~~il~~a~~~LkpgG~lvle~~~~-~q~~---~v~~~l~~~~~~gf~~v~~~~D----l-~g~~R~~~  367 (371)
                             ...+ ..+++.+.+.|+|||++++..+.. .+.+   .+.+.+++    -|..+..+.-    + .|..-|++
T Consensus       197 -------~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~----vF~~v~~~~~~iP~~~~g~~g~~~  265 (314)
T 2b2c_A          197 -------ESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRK----IFPAVTYAQSIVSTYPSGSMGYLI  265 (314)
T ss_dssp             --------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHH----HCSEEEEEEEECTTSGGGEEEEEE
T ss_pred             -------hhhhHHHHHHHHHhhcCCCeEEEEECCCcccCHHHHHHHHHHHHH----HCCcceEEEEEecCcCCCceEEEE
Confidence                   0112 478889999999999999987432 2233   34444443    2666655432    1 24435666


Q ss_pred             EEe
Q 017476          368 GFR  370 (371)
Q Consensus       368 a~~  370 (371)
                      +.+
T Consensus       266 ask  268 (314)
T 2b2c_A          266 CAK  268 (314)
T ss_dssp             EES
T ss_pred             EeC
Confidence            654

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.57  E-value=5.5e-14  Score=125.71  Aligned_cols=122  Identities=15%  Similarity=0.212  Sum_probs=90.8

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      .++.+|||+|||+|.+++.+++.  ...+|+|+|+|+.+++.|++|+..+++  +++++++|+.+. +   ++||+|++|
T Consensus        48 ~~~~~vlD~g~G~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~-~---~~~D~v~~~  119 (207)
T 1wy7_A           48 IEGKVVADLGAGTGVLSYGALLL--GAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEF-N---SRVDIVIMN  119 (207)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGC-C---CCCSEEEEC
T ss_pred             CCcCEEEEeeCCCCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECchHHc-C---CCCCEEEEc
Confidence            35679999999999999999985  345899999999999999999998887  599999999763 2   589999999


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCcee
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCN  352 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~  352 (371)
                      |||.....-                      .  ...+++.+.+.+  ||.+++.+......+.+.+.+.+   .||.-
T Consensus       120 ~p~~~~~~~----------------------~--~~~~l~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~---~g~~~  169 (207)
T 1wy7_A          120 PPFGSQRKH----------------------A--DRPFLLKAFEIS--DVVYSIHLAKPEVRRFIEKFSWE---HGFVV  169 (207)
T ss_dssp             CCCSSSSTT----------------------T--THHHHHHHHHHC--SEEEEEEECCHHHHHHHHHHHHH---TTEEE
T ss_pred             CCCccccCC----------------------c--hHHHHHHHHHhc--CcEEEEEeCCcCCHHHHHHHHHH---CCCeE
Confidence            999753210                      0  124566666777  66555554333455666777765   56743

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.56  E-value=1.1e-14  Score=135.36  Aligned_cols=121  Identities=16%  Similarity=0.311  Sum_probs=97.6

Q ss_pred             cchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q 017476          173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIR  252 (371)
Q Consensus       173 rp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~  252 (371)
                      .+++..++..+....       ++.+|||+|||+|..++.+++.++++++|+++|+|+.+++.|++|+...++.++++++
T Consensus        64 ~~~~~~ll~~l~~~~-------~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~  136 (247)
T 1sui_A           64 SADEGQFLSMLLKLI-------NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFR  136 (247)
T ss_dssp             CHHHHHHHHHHHHHT-------TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEE
T ss_pred             CHHHHHHHHHHHHhh-------CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEE
Confidence            466666666655543       3569999999999999999998744789999999999999999999999998889999


Q ss_pred             EcCcccccccC------CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEE
Q 017476          253 QGSWFGKLKDV------EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFA  326 (371)
Q Consensus       253 ~gD~~~~l~~~------~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lv  326 (371)
                      .+|+.+.++..      .++||+|+++.+.                             ..+..+++.+.++|+|||+++
T Consensus       137 ~gda~~~l~~l~~~~~~~~~fD~V~~d~~~-----------------------------~~~~~~l~~~~~~LkpGG~lv  187 (247)
T 1sui_A          137 EGPALPVLDEMIKDEKNHGSYDFIFVDADK-----------------------------DNYLNYHKRLIDLVKVGGVIG  187 (247)
T ss_dssp             ESCHHHHHHHHHHSGGGTTCBSEEEECSCS-----------------------------TTHHHHHHHHHHHBCTTCCEE
T ss_pred             ECCHHHHHHHHHhccCCCCCEEEEEEcCch-----------------------------HHHHHHHHHHHHhCCCCeEEE
Confidence            99987654422      4689999996431                             113467888889999999999


Q ss_pred             EEE
Q 017476          327 FET  329 (371)
Q Consensus       327 le~  329 (371)
                      +..
T Consensus       188 ~d~  190 (247)
T 1sui_A          188 YDN  190 (247)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            864

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.56  E-value=7e-14  Score=131.40  Aligned_cols=130  Identities=17%  Similarity=0.165  Sum_probs=101.5

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCC
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP  275 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPP  275 (371)
                      +.+|||+|||+|.++..+++.   +.+|+|+|+|+.+++.|++++...++.++++++++|+.+......++||+|+++-.
T Consensus        69 ~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~  145 (285)
T 4htf_A           69 KLRVLDAGGGEGQTAIKMAER---GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV  145 (285)
T ss_dssp             CCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC
T ss_pred             CCEEEEeCCcchHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECch
Confidence            569999999999999999985   57999999999999999999999888778999999997754334579999999633


Q ss_pred             CCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC------------------------
Q 017476          276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG------------------------  331 (371)
Q Consensus       276 Yi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~------------------------  331 (371)
                      +              .|-+            ....+++.+.+.|||||++++...+                        
T Consensus       146 l--------------~~~~------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (285)
T 4htf_A          146 L--------------EWVA------------DPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKK  199 (285)
T ss_dssp             G--------------GGCS------------CHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC
T ss_pred             h--------------hccc------------CHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhcccc
Confidence            2              2211            1247889999999999999997631                        


Q ss_pred             ---------cCcHHHHHHHHhccccCCceeEEEEe
Q 017476          332 ---------EKQCKFLKNYLENDSACSFCNVSIVS  357 (371)
Q Consensus       332 ---------~~q~~~v~~~l~~~~~~gf~~v~~~~  357 (371)
                               ....+++.+++++   .||..+++..
T Consensus       200 ~~~~~~~~~~~~~~~l~~~l~~---aGf~v~~~~~  231 (285)
T 4htf_A          200 KKRTLSPDYPRDPTQVYLWLEE---AGWQIMGKTG  231 (285)
T ss_dssp             ----CCCSCCBCHHHHHHHHHH---TTCEEEEEEE
T ss_pred             ccccCCCCCCCCHHHHHHHHHH---CCCceeeeee
Confidence                     1123677888875   7898766543

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.56  E-value=7e-14  Score=127.83  Aligned_cols=141  Identities=17%  Similarity=0.140  Sum_probs=100.8

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc--cCCCceeEEE
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK--DVEGKLSGVV  271 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~--~~~~~fDlIv  271 (371)
                      .++.+|||+|||+|.++..+++.+ +..+|+|+|+|+.+++.|++|++.+   +++.++.+|+.++..  ...+.||+|+
T Consensus        73 ~~~~~VLDlGcG~G~~~~~la~~~-~~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~D~v~  148 (230)
T 1fbn_A           73 KRDSKILYLGASAGTTPSHVADIA-DKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYANIVEKVDVIY  148 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHT-TTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTTTSCCEEEEE
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHc-CCcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCcccccccCccEEEEE
Confidence            356799999999999999999986 4679999999999999999997655   469999999876311  1126899999


Q ss_pred             EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC--cC--------cHHHHHHH
Q 017476          272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG--EK--------QCKFLKNY  341 (371)
Q Consensus       272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~--~~--------q~~~v~~~  341 (371)
                      .++|..                            +....+++.+.+.|+|||++++....  ..        ..+.+. +
T Consensus       149 ~~~~~~----------------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~  199 (230)
T 1fbn_A          149 EDVAQP----------------------------NQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-I  199 (230)
T ss_dssp             ECCCST----------------------------THHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-H
T ss_pred             EecCCh----------------------------hHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-H
Confidence            764321                            11236788899999999999996421  11        124455 6


Q ss_pred             HhccccCCceeEEEEecCCC--C-ceEEEEEeC
Q 017476          342 LENDSACSFCNVSIVSDFAG--I-QRFVTGFRQ  371 (371)
Q Consensus       342 l~~~~~~gf~~v~~~~Dl~g--~-~R~~~a~~~  371 (371)
                      +++   .||..++... +..  . .-+++++|+
T Consensus       200 l~~---~Gf~~~~~~~-~~~~~~~~~~v~~~k~  228 (230)
T 1fbn_A          200 LEA---GGFKIVDEVD-IEPFEKDHVMFVGIWE  228 (230)
T ss_dssp             HHH---HTEEEEEEEE-CTTTSTTEEEEEEEEC
T ss_pred             HHH---CCCEEEEEEc-cCCCccceEEEEEEeC
Confidence            664   6797776653 333  3 345666653

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.56  E-value=7.4e-14  Score=126.93  Aligned_cols=121  Identities=15%  Similarity=0.122  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCc
Q 017476          177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSW  256 (371)
Q Consensus       177 e~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~  256 (371)
                      ..+...+...+ ......++.+|||+|||+|.++..+++.+++..+|+|+|+|+.+++.+++|++.+   .+++++++|+
T Consensus        56 ~~~~~~i~~~l-~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~  131 (227)
T 1g8a_A           56 SKLGAAIMNGL-KNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDA  131 (227)
T ss_dssp             CHHHHHHHTTC-CCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCT
T ss_pred             hhHHHHHHhhH-HhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccC
Confidence            34445554333 2222345679999999999999999998756689999999999999999998755   4599999999


Q ss_pred             cccc--ccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          257 FGKL--KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       257 ~~~l--~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      .+..  ....++||+|++|+|..                            +....++..+.+.|+|||++++..
T Consensus       132 ~~~~~~~~~~~~~D~v~~~~~~~----------------------------~~~~~~l~~~~~~LkpgG~l~~~~  178 (227)
T 1g8a_A          132 TKPEEYRALVPKVDVIFEDVAQP----------------------------TQAKILIDNAEVYLKRGGYGMIAV  178 (227)
T ss_dssp             TCGGGGTTTCCCEEEEEECCCST----------------------------THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCcchhhcccCCceEEEECCCCH----------------------------hHHHHHHHHHHHhcCCCCEEEEEE
Confidence            7632  22246899999987711                            012245788899999999999875

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.56  E-value=7.1e-14  Score=128.24  Aligned_cols=122  Identities=21%  Similarity=0.316  Sum_probs=96.4

Q ss_pred             ccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEE
Q 017476          172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEI  251 (371)
Q Consensus       172 Prp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~  251 (371)
                      ..+.+..++..+....       ++.+|||+|||+|..++.+++.++++.+|+++|+++.+++.|++|+...++.+++++
T Consensus        56 ~~~~~~~~l~~l~~~~-------~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~  128 (232)
T 3cbg_A           56 ISPEQAQFLGLLISLT-------GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISL  128 (232)
T ss_dssp             CCHHHHHHHHHHHHHH-------TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEE
T ss_pred             cCHHHHHHHHHHHHhc-------CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEE
Confidence            3456666666555443       356999999999999999999764478999999999999999999999999888999


Q ss_pred             EEcCcccccccC---C--CceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEE
Q 017476          252 RQGSWFGKLKDV---E--GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFA  326 (371)
Q Consensus       252 ~~gD~~~~l~~~---~--~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lv  326 (371)
                      +.+|+.+.+...   .  ++||+|+++.+.                             ..+..+++.+.+.|+|||+++
T Consensus       129 ~~~d~~~~l~~l~~~~~~~~fD~V~~d~~~-----------------------------~~~~~~l~~~~~~LkpgG~lv  179 (232)
T 3cbg_A          129 RLGPALATLEQLTQGKPLPEFDLIFIDADK-----------------------------RNYPRYYEIGLNLLRRGGLMV  179 (232)
T ss_dssp             EESCHHHHHHHHHTSSSCCCEEEEEECSCG-----------------------------GGHHHHHHHHHHTEEEEEEEE
T ss_pred             EEcCHHHHHHHHHhcCCCCCcCEEEECCCH-----------------------------HHHHHHHHHHHHHcCCCeEEE
Confidence            999986543321   2  689999996431                             123467888899999999999


Q ss_pred             EEE
Q 017476          327 FET  329 (371)
Q Consensus       327 le~  329 (371)
                      +..
T Consensus       180 ~~~  182 (232)
T 3cbg_A          180 IDN  182 (232)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            964

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.56  E-value=3.4e-14  Score=140.16  Aligned_cols=116  Identities=22%  Similarity=0.256  Sum_probs=95.6

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccC---CCceeEEE
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV---EGKLSGVV  271 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~---~~~fDlIv  271 (371)
                      ++.+|||+|||+|.+++.+++.   ..+|+|+|+|+.+++.|++|++.+++.+ ++++++|+.+.+...   .++||+|+
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~~~-~~~~~~d~~~~~~~~~~~~~~fD~Ii  284 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGN-VRVLEANAFDLLRRLEKEGERFDLVV  284 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCC-ceEEECCHHHHHHHHHhcCCCeeEEE
Confidence            4569999999999999999986   4799999999999999999999999987 999999997754421   46899999


Q ss_pred             EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC
Q 017476          272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG  331 (371)
Q Consensus       272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~  331 (371)
                      +|||+.......     +            .+....+..++..+.+.|+|||++++....
T Consensus       285 ~dpP~~~~~~~~-----~------------~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  327 (382)
T 1wxx_A          285 LDPPAFAKGKKD-----V------------ERAYRAYKEVNLRAIKLLKEGGILATASCS  327 (382)
T ss_dssp             ECCCCSCCSTTS-----H------------HHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             ECCCCCCCChhH-----H------------HHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            999986543210     0            012466778999999999999999998854

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.55  E-value=4.3e-14  Score=130.50  Aligned_cols=146  Identities=15%  Similarity=0.105  Sum_probs=107.7

Q ss_pred             hHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q 017476          175 ETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG  254 (371)
Q Consensus       175 ~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~g  254 (371)
                      .....++.+++.+    ...++.+|||+|||+|.++..+++.+  +.+|+|+|+|+.+++.|++++...   .+++++++
T Consensus        39 ~~~~~~~~~~~~~----~~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~  109 (266)
T 3ujc_A           39 GGLEATKKILSDI----ELNENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDICSNIVNMANERVSGN---NKIIFEAN  109 (266)
T ss_dssp             THHHHHHHHTTTC----CCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCSC---TTEEEEEC
T ss_pred             chHHHHHHHHHhc----CCCCCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEC
Confidence            3344455555444    33456799999999999999999975  579999999999999999886544   46999999


Q ss_pred             CcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC---
Q 017476          255 SWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG---  331 (371)
Q Consensus       255 D~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~---  331 (371)
                      |+.+. +...++||+|+++-..              .|-+          ......+++.+.+.|+|||++++....   
T Consensus       110 d~~~~-~~~~~~fD~v~~~~~l--------------~~~~----------~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  164 (266)
T 3ujc_A          110 DILTK-EFPENNFDLIYSRDAI--------------LALS----------LENKNKLFQKCYKWLKPTGTLLITDYCATE  164 (266)
T ss_dssp             CTTTC-CCCTTCEEEEEEESCG--------------GGSC----------HHHHHHHHHHHHHHEEEEEEEEEEEEEESC
T ss_pred             ccccC-CCCCCcEEEEeHHHHH--------------HhcC----------hHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence            99763 3335789999995321              2210          145568999999999999999997521   


Q ss_pred             ------------------cCcHHHHHHHHhccccCCceeEEEEe
Q 017476          332 ------------------EKQCKFLKNYLENDSACSFCNVSIVS  357 (371)
Q Consensus       332 ------------------~~q~~~v~~~l~~~~~~gf~~v~~~~  357 (371)
                                        ....+.+.+++++   .||..+++..
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~Gf~~~~~~~  205 (266)
T 3ujc_A          165 KENWDDEFKEYVKQRKYTLITVEEYADILTA---CNFKNVVSKD  205 (266)
T ss_dssp             GGGCCHHHHHHHHHHTCCCCCHHHHHHHHHH---TTCEEEEEEE
T ss_pred             cccchHHHHHHHhcCCCCCCCHHHHHHHHHH---cCCeEEEEEe
Confidence                              1245677888875   7898877653

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.55  E-value=2.2e-14  Score=132.28  Aligned_cols=121  Identities=16%  Similarity=0.229  Sum_probs=97.0

Q ss_pred             cchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q 017476          173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIR  252 (371)
Q Consensus       173 rp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~  252 (371)
                      .+++..++..+....       ++.+|||+|||+|..++.+++.++++.+|+++|+|+.+++.|++|++..|+.++++++
T Consensus        55 ~~~~~~~l~~l~~~~-------~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~  127 (237)
T 3c3y_A           55 SPLAGQLMSFVLKLV-------NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFI  127 (237)
T ss_dssp             CHHHHHHHHHHHHHT-------TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEE
T ss_pred             CHHHHHHHHHHHHhh-------CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE
Confidence            355555666555433       3569999999999999999998744789999999999999999999999998889999


Q ss_pred             EcCcccccccC------CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEE
Q 017476          253 QGSWFGKLKDV------EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFA  326 (371)
Q Consensus       253 ~gD~~~~l~~~------~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lv  326 (371)
                      .+|+.+.++..      .++||+|+++.+.                             ..+..+++.+.++|+|||+++
T Consensus       128 ~gda~~~l~~l~~~~~~~~~fD~I~~d~~~-----------------------------~~~~~~l~~~~~~L~pGG~lv  178 (237)
T 3c3y_A          128 ESDAMLALDNLLQGQESEGSYDFGFVDADK-----------------------------PNYIKYHERLMKLVKVGGIVA  178 (237)
T ss_dssp             ESCHHHHHHHHHHSTTCTTCEEEEEECSCG-----------------------------GGHHHHHHHHHHHEEEEEEEE
T ss_pred             EcCHHHHHHHHHhccCCCCCcCEEEECCch-----------------------------HHHHHHHHHHHHhcCCCeEEE
Confidence            99997754432      3689999986320                             124478888899999999999


Q ss_pred             EEE
Q 017476          327 FET  329 (371)
Q Consensus       327 le~  329 (371)
                      +..
T Consensus       179 ~d~  181 (237)
T 3c3y_A          179 YDN  181 (237)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            865

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=99.55  E-value=2.7e-14  Score=147.11  Aligned_cols=162  Identities=19%  Similarity=0.217  Sum_probs=111.2

Q ss_pred             cccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhC--------------CCcEEEEEeCCHHHHH
Q 017476          169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG--------------SKGSIIAVDLNPLAAA  234 (371)
Q Consensus       169 vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~--------------~~~~V~gvDis~~al~  234 (371)
                      .+.|++.++.+++.+.        . ...+|+|+|||||.+.+.+++.+.              ...+++|+|+++.+++
T Consensus       227 fyTP~~Vv~lmv~ll~--------p-~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~  297 (544)
T 3khk_A          227 YYTPKSIVTLIVEMLE--------P-YKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWK  297 (544)
T ss_dssp             TCCCHHHHHHHHHHHC--------C-CSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHH
T ss_pred             EeCCHHHHHHHHHHHh--------c-CCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHH
Confidence            4679988888887642        1 123999999999999998876531              0468999999999999


Q ss_pred             HHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCcccccc--------CCCCcHH
Q 017476          235 VAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALD--------GGVDGLD  306 (371)
Q Consensus       235 ~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~--------gg~dGl~  306 (371)
                      +|+.|+..+|+..++.+.++|.+........+||+||+||||....-..    +.....++....        ....+-.
T Consensus       298 lA~~Nl~l~gi~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~----~~~~~d~r~~~g~~~~~~~~~~~~~~~  373 (544)
T 3khk_A          298 LAAMNMVIRGIDFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWH----EKLADDPRWTINTNGEKRILTPPTGNA  373 (544)
T ss_dssp             HHHHHHHHTTCCCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCC----GGGTTCGGGEECCC--CEECCCCTTCT
T ss_pred             HHHHHHHHhCCCcccceeccchhcCcccccccccEEEECCCcCCccccc----hhhhhhhhhhcCcccccccccCCCcch
Confidence            9999999999876666689998764333346899999999998532111    111122222211        0111111


Q ss_pred             HHHHHHHHHhcccccCcEEEEEECC-----c-CcHHHHHHHHhc
Q 017476          307 YLLHLCNGTASMLKPGGFFAFETNG-----E-KQCKFLKNYLEN  344 (371)
Q Consensus       307 ~~~~il~~a~~~LkpgG~lvle~~~-----~-~q~~~v~~~l~~  344 (371)
                      .+ .+++.+.++|++||++++.++.     . .....+++.|.+
T Consensus       374 ~~-~Fl~~~l~~Lk~gGr~aiVlP~g~L~~~~~~~~~iRk~Lle  416 (544)
T 3khk_A          374 NF-AWMLHMLYHLAPTGSMALLLANGSMSSNTNNEGEIRKTLVE  416 (544)
T ss_dssp             HH-HHHHHHHHTEEEEEEEEEEEETHHHHCCGGGHHHHHHHHHH
T ss_pred             hH-HHHHHHHHHhccCceEEEEecchhhhcCcchHHHHHHHHHh
Confidence            12 4778888999999999988742     1 245678887765

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.55  E-value=3.4e-14  Score=129.70  Aligned_cols=140  Identities=14%  Similarity=0.101  Sum_probs=106.1

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|.++..+++   ++.+|+|+|+|+.+++.|++++...+...+++++++|+.+...  .++||+|+++.
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~fD~v~~~~  140 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMAS---PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRP--TELFDLIFDYV  140 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCB---TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCC--SSCEEEEEEES
T ss_pred             CCCCEEEeCCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCC--CCCeeEEEECh
Confidence            345999999999999999876   4689999999999999999998876655679999999987543  36899999975


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCc----------CcHHHHHHHHhc
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGE----------KQCKFLKNYLEN  344 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~----------~q~~~v~~~l~~  344 (371)
                      .+..      +++                  +....+++.+.+.|+|||.+++.....          ...+.+.+++++
T Consensus       141 ~l~~------~~~------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  196 (235)
T 3lcc_A          141 FFCA------IEP------------------EMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVP  196 (235)
T ss_dssp             STTT------SCG------------------GGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGG
T ss_pred             hhhc------CCH------------------HHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHH
Confidence            4321      111                  123478889999999999999865321          245788899885


Q ss_pred             cccCCceeEEEEec------CCCCceEE
Q 017476          345 DSACSFCNVSIVSD------FAGIQRFV  366 (371)
Q Consensus       345 ~~~~gf~~v~~~~D------l~g~~R~~  366 (371)
                         .||..+++...      ..|.+++.
T Consensus       197 ---~Gf~~~~~~~~~~~~~~~~g~e~~~  221 (235)
T 3lcc_A          197 ---IGFKAVSVEENPHAIPTRKGKEKLG  221 (235)
T ss_dssp             ---GTEEEEEEEECTTCCTTTTTSCEEE
T ss_pred             ---cCCeEEEEEecCCccccccCHHHHh
Confidence               78988877543      34455554

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.55  E-value=7.9e-14  Score=137.80  Aligned_cols=132  Identities=22%  Similarity=0.141  Sum_probs=96.5

Q ss_pred             cchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCC--------------------------------
Q 017476          173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSK--------------------------------  220 (371)
Q Consensus       173 rp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~--------------------------------  220 (371)
                      .|..|.++..++...    ...++..++|++||||.+++.+|... .+                                
T Consensus       176 Apl~e~LAaall~l~----~~~~~~~llDp~CGSGt~lIEAa~~a-~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~  250 (384)
T 3ldg_A          176 APIKENMAAAIILLS----NWFPDKPFVDPTCGSGTFCIEAAMIG-MNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQ  250 (384)
T ss_dssp             CCCCHHHHHHHHHHT----TCCTTSCEEETTCTTSHHHHHHHHHH-TTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHh----CCCCCCeEEEeCCcCCHHHHHHHHHh-cCcCCCccccchhhhhccCCHHHHHHHHHHHHHh
Confidence            355677777776654    33356789999999999999998763 22                                


Q ss_pred             ------cEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCc
Q 017476          221 ------GSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEP  294 (371)
Q Consensus       221 ------~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep  294 (371)
                            .+|+|+|+|+.|++.|++|++.+|+.+++++.++|+.+...  .++||+||+||||...-.  . ..+.     
T Consensus       251 ~~~~~~~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~--~~~fD~Iv~NPPYG~rl~--~-~~~l-----  320 (384)
T 3ldg_A          251 ADYDIQLDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKT--NKINGVLISNPPYGERLL--D-DKAV-----  320 (384)
T ss_dssp             CCTTCCCCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCC--CCCSCEEEECCCCTTTTS--C-HHHH-----
T ss_pred             hhccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCc--cCCcCEEEECCchhhccC--C-HHHH-----
Confidence                  46999999999999999999999998889999999987533  258999999999964311  0 0000     


Q ss_pred             cccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC
Q 017476          295 RLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG  331 (371)
Q Consensus       295 ~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~  331 (371)
                                .+.|+.+-+... . -+||.+++.++.
T Consensus       321 ----------~~ly~~lg~~lk-~-~~g~~~~iit~~  345 (384)
T 3ldg_A          321 ----------DILYNEMGETFA-P-LKTWSQFILTND  345 (384)
T ss_dssp             ----------HHHHHHHHHHHT-T-CTTSEEEEEESC
T ss_pred             ----------HHHHHHHHHHHh-h-CCCcEEEEEECC
Confidence                      133444443333 2 469999999953

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.55  E-value=2e-13  Score=124.40  Aligned_cols=117  Identities=15%  Similarity=0.089  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCc
Q 017476          177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSW  256 (371)
Q Consensus       177 e~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~  256 (371)
                      ..+.+.+.+.+      .++.+|||+|||+|.++..+++.    .+|+|+|+|+.+++.|++++...+  .+++++++|+
T Consensus        21 ~~~~~~~~~~~------~~~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~   88 (243)
T 3d2l_A           21 PEWVAWVLEQV------EPGKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETN--RHVDFWVQDM   88 (243)
T ss_dssp             HHHHHHHHHHS------CTTCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCG
T ss_pred             HHHHHHHHHHc------CCCCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcC--CceEEEEcCh
Confidence            34555555544      13469999999999999988773    699999999999999999998776  3589999998


Q ss_pred             ccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          257 FGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       257 ~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      .+...  .++||+|+++..             +..|-+         ..+....+++.+.++|+|||++++++
T Consensus        89 ~~~~~--~~~fD~v~~~~~-------------~~~~~~---------~~~~~~~~l~~~~~~L~pgG~l~~~~  137 (243)
T 3d2l_A           89 RELEL--PEPVDAITILCD-------------SLNYLQ---------TEADVKQTFDSAARLLTDGGKLLFDV  137 (243)
T ss_dssp             GGCCC--SSCEEEEEECTT-------------GGGGCC---------SHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhcCC--CCCcCEEEEeCC-------------chhhcC---------CHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence            76422  368999999631             001110         02345678899999999999999853

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.55  E-value=6.1e-14  Score=129.61  Aligned_cols=130  Identities=21%  Similarity=0.263  Sum_probs=95.1

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc--------CCCCcEEEEEcCccccccc--CC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY--------GLQDIIEIRQGSWFGKLKD--VE  264 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~--------gl~~~v~~~~gD~~~~l~~--~~  264 (371)
                      ++.+|||+|||+|.+++.+++.. +..+|+|||+|+.+++.|++|+..+        ++. +++++++|+.+.++.  ..
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-nv~~~~~D~~~~l~~~~~~  126 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAF-PEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQ-NINVLRGNAMKFLPNFFEK  126 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHS-TTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTT-TEEEEECCTTSCGGGTSCT
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhC-CCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCC-cEEEEeccHHHHHHHhccc
Confidence            45689999999999999999985 7789999999999999999999877        775 499999999875542  24


Q ss_pred             CceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhc
Q 017476          265 GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLEN  344 (371)
Q Consensus       265 ~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~  344 (371)
                      +.+|.|+.+.|-......        .+..+.          ....+++.+.++|+|||.+++.+......+.+.+.+.+
T Consensus       127 ~~~d~v~~~~p~p~~k~~--------~~~~r~----------~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~  188 (246)
T 2vdv_E          127 GQLSKMFFCFPDPHFKQR--------KHKARI----------ITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEE  188 (246)
T ss_dssp             TCEEEEEEESCCCC--------------CSSC----------CCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHH
T ss_pred             cccCEEEEECCCcccccc--------hhHHhh----------ccHHHHHHHHHHcCCCCEEEEEeccHHHHHHHHHHHHh
Confidence            789999887433211110        000000          02378888899999999999988544444556656654

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.55  E-value=1.3e-13  Score=128.77  Aligned_cols=107  Identities=18%  Similarity=0.230  Sum_probs=87.9

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      .++.+|||+|||+|.++..+++.. ++.+|+|+|+|+.+++.|++++...++++ ++++.+|+.+. +...++||+|+++
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~d~~~~-~~~~~~fD~v~~~  112 (276)
T 3mgg_A           36 PPGAKVLEAGCGIGAQTVILAKNN-PDAEITSIDISPESLEKARENTEKNGIKN-VKFLQANIFSL-PFEDSSFDHIFVC  112 (276)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCGGGC-CSCTTCEEEEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCC-cEEEEcccccC-CCCCCCeeEEEEe
Confidence            456799999999999999999984 78899999999999999999999998864 99999999763 3335789999996


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      ..+.              |-+            ....+++.+.+.|+|||++++..
T Consensus       113 ~~l~--------------~~~------------~~~~~l~~~~~~L~pgG~l~~~~  142 (276)
T 3mgg_A          113 FVLE--------------HLQ------------SPEEALKSLKKVLKPGGTITVIE  142 (276)
T ss_dssp             SCGG--------------GCS------------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             chhh--------------hcC------------CHHHHHHHHHHHcCCCcEEEEEE
Confidence            4321              111            12367888999999999999975

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.54  E-value=4.7e-13  Score=131.22  Aligned_cols=145  Identities=19%  Similarity=0.142  Sum_probs=113.4

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      ....+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.|++++...++.++++++.+|++++.+   ..||+|+++
T Consensus       201 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p---~~~D~v~~~  275 (369)
T 3gwz_A          201 SGAATAVDIGGGRGSLMAAVLDAF-PGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFETIP---DGADVYLIK  275 (369)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTCCC---SSCSEEEEE
T ss_pred             ccCcEEEEeCCCccHHHHHHHHHC-CCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCCCC---CCceEEEhh
Confidence            356799999999999999999986 8889999999 99999999999999988899999999986544   379999984


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC----------------------
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG----------------------  331 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~----------------------  331 (371)
                      --.              .+-+          -+....+++.+.+.|+|||++++....                      
T Consensus       276 ~vl--------------h~~~----------d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g  331 (369)
T 3gwz_A          276 HVL--------------HDWD----------DDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGG  331 (369)
T ss_dssp             SCG--------------GGSC----------HHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSC
T ss_pred             hhh--------------ccCC----------HHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCC
Confidence            221              1111          122347899999999999999884311                      


Q ss_pred             -cCcHHHHHHHHhccccCCceeEEEEecCCCCceEEEEEe
Q 017476          332 -EKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFR  370 (371)
Q Consensus       332 -~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~~  370 (371)
                       ....+++.+++++   .||..+++.+...+...++.+++
T Consensus       332 ~~~t~~e~~~ll~~---aGf~~~~~~~~~~~~~svie~~~  368 (369)
T 3gwz_A          332 AERSESEFAALLEK---SGLRVERSLPCGAGPVRIVEIRR  368 (369)
T ss_dssp             CCBCHHHHHHHHHT---TTEEEEEEEECSSSSEEEEEEEE
T ss_pred             ccCCHHHHHHHHHH---CCCeEEEEEECCCCCcEEEEEEe
Confidence             1235667777775   78999999876667777777765

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.54  E-value=4.5e-14  Score=135.30  Aligned_cols=196  Identities=12%  Similarity=0.109  Sum_probs=119.7

Q ss_pred             CCceeeEe-ecccccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEE
Q 017476          146 RKPFQYLV-GCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSII  224 (371)
Q Consensus       146 ~~P~~yi~-g~~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~  224 (371)
                      .-+.|+|. -...+++..+.++..+-....+ +.....++..+ .......+.+|||+|||+|.++..+++.. +..+|+
T Consensus        47 ~s~~q~i~v~~~~~~g~~L~ldg~~~~~~~d-e~~y~e~l~~~-~l~~~~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~  123 (304)
T 2o07_A           47 RSRYQDILVFRSKTYGNVLVLDGVIQCTERD-EFSYQEMIANL-PLCSHPNPRKVLIIGGGDGGVLREVVKHP-SVESVV  123 (304)
T ss_dssp             ECSSSEEEEEEESSSCEEEEETTEEEEETTT-HHHHHHHHHHH-HHTTSSSCCEEEEEECTTSHHHHHHTTCT-TCCEEE
T ss_pred             ECCCcEEEEEEcCCCceEEEECCEEEeeccc-chHHHHHHHHH-HHhhCCCCCEEEEECCCchHHHHHHHHcC-CCCEEE
Confidence            45677663 2334455666555321111122 22222222222 11112346799999999999999999863 668999


Q ss_pred             EEeCCHHHHHHHHHHHHH--cCC-CCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCC
Q 017476          225 AVDLNPLAAAVAAFNAQR--YGL-QDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGG  301 (371)
Q Consensus       225 gvDis~~al~~A~~n~~~--~gl-~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg  301 (371)
                      +||+|+.+++.|++|+..  .++ .++++++.+|..+.+....++||+|++|+|......              .     
T Consensus       124 ~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~d~~~~~~~~--------------~-----  184 (304)
T 2o07_A          124 QCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPMGPA--------------E-----  184 (304)
T ss_dssp             EEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEECC--------------------------
T ss_pred             EEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEECCCCCCCcc--------------h-----
Confidence            999999999999999875  344 457999999987755444578999999987531100              0     


Q ss_pred             CCcHHHHHHHHHHHhcccccCcEEEEEECC-cCcH---HHHHHHHhccccCCceeEEEEe----cC-CCCceEEEEEe
Q 017476          302 VDGLDYLLHLCNGTASMLKPGGFFAFETNG-EKQC---KFLKNYLENDSACSFCNVSIVS----DF-AGIQRFVTGFR  370 (371)
Q Consensus       302 ~dGl~~~~~il~~a~~~LkpgG~lvle~~~-~~q~---~~v~~~l~~~~~~gf~~v~~~~----Dl-~g~~R~~~a~~  370 (371)
                         -.....+++.+.+.|+|||++++.... +.+.   ..+.+.+++    -|..+..+.    -+ .|..-|+++.+
T Consensus       185 ---~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~----~f~~v~~~~~~vP~~~~g~~g~~~as~  255 (304)
T 2o07_A          185 ---SLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQS----LFPVVAYAYCTIPTYPSGQIGFMLCSK  255 (304)
T ss_dssp             -------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHH----HCSEEEEEEEECTTSGGGEEEEEEEES
T ss_pred             ---hhhHHHHHHHHHhccCCCeEEEEecCCcccchHHHHHHHHHHHH----hCCCceeEEEEeccccCcceEEEEEeC
Confidence               011236888899999999999998732 2332   334444443    366665442    22 24445666653

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.54  E-value=2.2e-13  Score=128.61  Aligned_cols=131  Identities=21%  Similarity=0.326  Sum_probs=101.8

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      .++.+|||+|||+|.++..+++.+  +.+|+|+|+|+.+++.|++++...++.++++++.+|+.+ ++...++||+|+++
T Consensus        81 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~fD~v~~~  157 (297)
T 2o57_A           81 QRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLE-IPCEDNSYDFIWSQ  157 (297)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTS-CSSCTTCEEEEEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCccc-CCCCCCCEeEEEec
Confidence            356799999999999999999975  469999999999999999999999988889999999976 33334789999995


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC---------------------c
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG---------------------E  332 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~---------------------~  332 (371)
                      -..              .|-+.            ...+++.+.+.|||||++++....                     .
T Consensus       158 ~~l--------------~~~~~------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (297)
T 2o57_A          158 DAF--------------LHSPD------------KLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDM  211 (297)
T ss_dssp             SCG--------------GGCSC------------HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSC
T ss_pred             chh--------------hhcCC------------HHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCC
Confidence            221              22111            347889999999999999987521                     1


Q ss_pred             CcHHHHHHHHhccccCCceeEEEE
Q 017476          333 KQCKFLKNYLENDSACSFCNVSIV  356 (371)
Q Consensus       333 ~q~~~v~~~l~~~~~~gf~~v~~~  356 (371)
                      ...+.+.+++++   .||..+++.
T Consensus       212 ~~~~~~~~~l~~---aGf~~~~~~  232 (297)
T 2o57_A          212 GSLGLYRSLAKE---CGLVTLRTF  232 (297)
T ss_dssp             CCHHHHHHHHHH---TTEEEEEEE
T ss_pred             CCHHHHHHHHHH---CCCeEEEEE
Confidence            134556677775   789877664

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.54  E-value=1.4e-13  Score=129.42  Aligned_cols=107  Identities=13%  Similarity=0.123  Sum_probs=86.4

Q ss_pred             CCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEE
Q 017476          193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS  272 (371)
Q Consensus       193 ~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvs  272 (371)
                      ..++.+|||+|||+|.++..+++..  +.+|+|+|+|+.+++.|++++...++.++++++.+|+.+ ++   ++||+|++
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~---~~fD~v~~  135 (287)
T 1kpg_A           62 LQPGMTLLDVGCGWGATMMRAVEKY--DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ-FD---EPVDRIVS  135 (287)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG-CC---CCCSEEEE
T ss_pred             CCCcCEEEEECCcccHHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CC---CCeeEEEE
Confidence            3456799999999999999999765  359999999999999999999988887789999999854 32   68999999


Q ss_pred             cCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       273 NPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      +-.+              .|-+.          .....+++.+.+.|||||++++..
T Consensus       136 ~~~l--------------~~~~~----------~~~~~~l~~~~~~LkpgG~l~~~~  168 (287)
T 1kpg_A          136 IGAF--------------EHFGH----------ERYDAFFSLAHRLLPADGVMLLHT  168 (287)
T ss_dssp             ESCG--------------GGTCT----------TTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             eCch--------------hhcCh----------HHHHHHHHHHHHhcCCCCEEEEEE
Confidence            5221              22110          224578899999999999999865

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.54  E-value=1.2e-13  Score=127.90  Aligned_cols=123  Identities=19%  Similarity=0.195  Sum_probs=89.9

Q ss_pred             CCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC
Q 017476          167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ  246 (371)
Q Consensus       167 ~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~  246 (371)
                      ..+..+..+.+.+++.+.        ..++.+|||+|||+|.++..+++..   .+|+|+|+|+.+++.|++++...+++
T Consensus        17 s~~~~~~~~~~~l~~~l~--------~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~   85 (260)
T 1vl5_A           17 SQIHAKGSDLAKLMQIAA--------LKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQ   85 (260)
T ss_dssp             ------CCCHHHHHHHHT--------CCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             CccccCHHHHHHHHHHhC--------CCCCCEEEEEeCCCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHhcCCC
Confidence            334445566666555431        2246799999999999999999863   49999999999999999999988876


Q ss_pred             CcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEE
Q 017476          247 DIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFA  326 (371)
Q Consensus       247 ~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lv  326 (371)
                       +++++++|+.+ ++..+++||+|++|-..              .|-+            ....+++++.+.|||||+++
T Consensus        86 -~v~~~~~d~~~-l~~~~~~fD~V~~~~~l--------------~~~~------------d~~~~l~~~~r~LkpgG~l~  137 (260)
T 1vl5_A           86 -QVEYVQGDAEQ-MPFTDERFHIVTCRIAA--------------HHFP------------NPASFVSEAYRVLKKGGQLL  137 (260)
T ss_dssp             -SEEEEECCC-C-CCSCTTCEEEEEEESCG--------------GGCS------------CHHHHHHHHHHHEEEEEEEE
T ss_pred             -ceEEEEecHHh-CCCCCCCEEEEEEhhhh--------------HhcC------------CHHHHHHHHHHHcCCCCEEE
Confidence             49999999865 33334789999996221              2211            12378889999999999999


Q ss_pred             EE
Q 017476          327 FE  328 (371)
Q Consensus       327 le  328 (371)
                      +.
T Consensus       138 ~~  139 (260)
T 1vl5_A          138 LV  139 (260)
T ss_dssp             EE
T ss_pred             EE
Confidence            85

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.54  E-value=6.8e-14  Score=129.87  Aligned_cols=138  Identities=15%  Similarity=0.101  Sum_probs=103.8

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|.++..+++.   +.+|+|+|+|+.+++.|+++..      +++++++|+.+...  .++||+|+++.
T Consensus        50 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~--~~~fD~v~~~~  118 (263)
T 3pfg_A           50 KAASLLDVACGTGMHLRHLADS---FGTVEGLELSADMLAIARRRNP------DAVLHHGDMRDFSL--GRRFSAVTCMF  118 (263)
T ss_dssp             TCCEEEEETCTTSHHHHHHTTT---SSEEEEEESCHHHHHHHHHHCT------TSEEEECCTTTCCC--SCCEEEEEECT
T ss_pred             CCCcEEEeCCcCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC------CCEEEECChHHCCc--cCCcCEEEEcC
Confidence            3579999999999999999885   4689999999999999998743      48999999976432  47999999963


Q ss_pred             -CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC----------------------
Q 017476          275 -PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG----------------------  331 (371)
Q Consensus       275 -PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~----------------------  331 (371)
                       .+              .|-+         ..+....+++.+.+.|+|||+++++...                      
T Consensus       119 ~~l--------------~~~~---------~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (263)
T 3pfg_A          119 SSI--------------GHLA---------GQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTV  175 (263)
T ss_dssp             TGG--------------GGSC---------HHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEE
T ss_pred             chh--------------hhcC---------CHHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCcee
Confidence             21              1111         0234557899999999999999995200                      


Q ss_pred             --------------------------------------cCcHHHHHHHHhccccCCceeEEEEecCCCCceEEEEEe
Q 017476          332 --------------------------------------EKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFR  370 (371)
Q Consensus       332 --------------------------------------~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~~  370 (371)
                                                            ....+++.++|++   .||..+++..+..+.. +.+|+|
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~---aGF~v~~~~~~~~~~~-~~va~K  248 (263)
T 3pfg_A          176 TRVSHSSREGEATRIEVHYLVAGPDRGITHHEESHRITLFTREQYERAFTA---AGLSVEFMPGGPSGRG-LFTGLP  248 (263)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEECCCHHHHHHHHHH---TTEEEEEESSTTTSSC-EEEEEE
T ss_pred             EEEEEEEecCcEEEEEEEEEEecCCCcEEEEEEEEEEEeecHHHHHHHHHH---CCCEEEEeeCCCCCce-eEEEec
Confidence                                                  0125789999986   8998888877665544 555665

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.54  E-value=8.4e-14  Score=128.46  Aligned_cols=143  Identities=14%  Similarity=0.105  Sum_probs=104.7

Q ss_pred             HHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccc
Q 017476          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG  258 (371)
Q Consensus       179 lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~  258 (371)
                      |...++..+ ......++.+|||+|||+|.++..+|+..++.++|+|+|+++++++.++++++..+   ++..+.+|...
T Consensus        62 laa~i~~gl-~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~---ni~~V~~d~~~  137 (233)
T 4df3_A           62 LAAALLKGL-IELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRR---NIFPILGDARF  137 (233)
T ss_dssp             HHHHHHTTC-SCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCT---TEEEEESCTTC
T ss_pred             HHHHHHhch-hhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhc---CeeEEEEeccC
Confidence            444444443 33455678899999999999999999998899999999999999999999876543   48999998865


Q ss_pred             cc--ccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC------
Q 017476          259 KL--KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN------  330 (371)
Q Consensus       259 ~l--~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~------  330 (371)
                      +.  ....+.+|+|+++.++..                            ....++.++.+.|||||.+++...      
T Consensus       138 p~~~~~~~~~vDvVf~d~~~~~----------------------------~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~  189 (233)
T 4df3_A          138 PEKYRHLVEGVDGLYADVAQPE----------------------------QAAIVVRNARFFLRDGGYMLMAIKARSIDV  189 (233)
T ss_dssp             GGGGTTTCCCEEEEEECCCCTT----------------------------HHHHHHHHHHHHEEEEEEEEEEEECCHHHH
T ss_pred             ccccccccceEEEEEEeccCCh----------------------------hHHHHHHHHHHhccCCCEEEEEEecccCCC
Confidence            43  233578999999766531                            123678889999999999998642      


Q ss_pred             ---CcCcHHHHHHHHhccccCCceeEEEE
Q 017476          331 ---GEKQCKFLKNYLENDSACSFCNVSIV  356 (371)
Q Consensus       331 ---~~~q~~~v~~~l~~~~~~gf~~v~~~  356 (371)
                         .....+...+.|++   .||..++..
T Consensus       190 ~~p~~~~~~~ev~~L~~---~GF~l~e~i  215 (233)
T 4df3_A          190 TTEPSEVYKREIKTLMD---GGLEIKDVV  215 (233)
T ss_dssp             HTCCCHHHHHHHHHHHH---TTCCEEEEE
T ss_pred             CCChHHHHHHHHHHHHH---CCCEEEEEE
Confidence               11122334445553   789776654

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.54  E-value=3.6e-14  Score=134.36  Aligned_cols=149  Identities=13%  Similarity=0.171  Sum_probs=106.1

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc--CC--------CCcEEEEEcCcccccccCC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY--GL--------QDIIEIRQGSWFGKLKDVE  264 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~--gl--------~~~v~~~~gD~~~~l~~~~  264 (371)
                      .+.+|||+|||+|.++..+++.  +..+|++||+|+.+++.|++|+ ..  ++        .++++++.+|..+.+.. .
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~--~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~  150 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-N  150 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-C
T ss_pred             CCCeEEEEcCCcCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-c
Confidence            4579999999999999999985  5679999999999999999998 43  32        45799999998765544 5


Q ss_pred             CceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCc-CcHHHHHHHHh
Q 017476          265 GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGE-KQCKFLKNYLE  343 (371)
Q Consensus       265 ~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~-~q~~~v~~~l~  343 (371)
                      ++||+|++|+|+....      ..        .       + ....+++.+.+.|+|||++++..+.. ...+.+..+.+
T Consensus       151 ~~fD~Ii~d~~~~~~~------~~--------~-------l-~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~  208 (281)
T 1mjf_A          151 RGFDVIIADSTDPVGP------AK--------V-------L-FSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYK  208 (281)
T ss_dssp             CCEEEEEEECCCCC--------------------------T-TSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHH
T ss_pred             CCeeEEEECCCCCCCc------ch--------h-------h-hHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHH
Confidence            7899999998863110      00        0       0 02367888899999999999986321 23333333333


Q ss_pred             ccccCCceeEEEE----ecCCCCceEEEEEe
Q 017476          344 NDSACSFCNVSIV----SDFAGIQRFVTGFR  370 (371)
Q Consensus       344 ~~~~~gf~~v~~~----~Dl~g~~R~~~a~~  370 (371)
                      .. ...|..+..+    +.+.|...|++|.+
T Consensus       209 ~l-~~~f~~v~~~~~~vP~~~g~~~~~~as~  238 (281)
T 1mjf_A          209 EM-KKVFDRVYYYSFPVIGYASPWAFLVGVK  238 (281)
T ss_dssp             HH-HHHCSEEEEEEECCTTSSSSEEEEEEEE
T ss_pred             HH-HHHCCceEEEEEecCCCCceEEEEEeeC
Confidence            22 1226666654    34578889998876

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.54  E-value=2e-13  Score=125.42  Aligned_cols=121  Identities=19%  Similarity=0.284  Sum_probs=93.9

Q ss_pred             cchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q 017476          173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIR  252 (371)
Q Consensus       173 rp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~  252 (371)
                      .|.+..++..+....       ++.+|||+|||+|..+..+++.++++.+|+++|+++.+++.|++|+...++.++++++
T Consensus        45 ~~~~~~~l~~l~~~~-------~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~  117 (239)
T 2hnk_A           45 SPEEGQFLNILTKIS-------GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLK  117 (239)
T ss_dssp             CHHHHHHHHHHHHHH-------TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEE
T ss_pred             CHHHHHHHHHHHHhh-------CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEE
Confidence            344444454444332       3569999999999999999998633789999999999999999999999988889999


Q ss_pred             EcCcccccccC---------------C-CceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHh
Q 017476          253 QGSWFGKLKDV---------------E-GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTA  316 (371)
Q Consensus       253 ~gD~~~~l~~~---------------~-~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~  316 (371)
                      .+|+.+.++..               . ++||+|+++..                             ...+..+++.+.
T Consensus       118 ~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~-----------------------------~~~~~~~l~~~~  168 (239)
T 2hnk_A          118 LGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDAD-----------------------------KENYPNYYPLIL  168 (239)
T ss_dssp             ESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSC-----------------------------GGGHHHHHHHHH
T ss_pred             ECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCC-----------------------------HHHHHHHHHHHH
Confidence            99986643321               1 68999999621                             112346788889


Q ss_pred             cccccCcEEEEEE
Q 017476          317 SMLKPGGFFAFET  329 (371)
Q Consensus       317 ~~LkpgG~lvle~  329 (371)
                      +.|+|||++++..
T Consensus       169 ~~L~pgG~lv~~~  181 (239)
T 2hnk_A          169 KLLKPGGLLIADN  181 (239)
T ss_dssp             HHEEEEEEEEEEC
T ss_pred             HHcCCCeEEEEEc
Confidence            9999999999975

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.54  E-value=5.5e-14  Score=139.35  Aligned_cols=99  Identities=30%  Similarity=0.286  Sum_probs=81.5

Q ss_pred             cchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCC--------------------------------
Q 017476          173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSK--------------------------------  220 (371)
Q Consensus       173 rp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~--------------------------------  220 (371)
                      .|..|.++..++...    ...++..|||++||||.+++.+|... .+                                
T Consensus       183 Apl~e~lAa~ll~l~----~~~~~~~vlDp~CGSGt~~ieaa~~~-~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~  257 (393)
T 3k0b_A          183 APIKETMAAALVLLT----SWHPDRPFYDPVCGSGTIPIEAALIG-QNIAPGFNREFVSETWDWMPKQVWADARQEAEDL  257 (393)
T ss_dssp             CSCCHHHHHHHHHHS----CCCTTSCEEETTCTTSHHHHHHHHHH-TTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHh----CCCCCCeEEEcCCCCCHHHHHHHHHh-cCcCCCccccchhhccccCCHHHHHHHHHHHHHh
Confidence            355677777776654    33356789999999999999998763 22                                


Q ss_pred             ------cEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCC
Q 017476          221 ------GSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIP  278 (371)
Q Consensus       221 ------~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~  278 (371)
                            .+|+|+|+|+.|++.|++|+..+|+.++++++++|+.+...  .++||+||+||||..
T Consensus       258 ~~~~~~~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~--~~~fD~Iv~NPPYg~  319 (393)
T 3k0b_A          258 ANYDQPLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQT--EDEYGVVVANPPYGE  319 (393)
T ss_dssp             CCTTCCCCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCC--CCCSCEEEECCCCCC
T ss_pred             hcccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCC--CCCCCEEEECCCCcc
Confidence                  46999999999999999999999998889999999987543  358999999999964

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.53  E-value=1.2e-13  Score=130.34  Aligned_cols=108  Identities=15%  Similarity=0.045  Sum_probs=86.3

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      .++.+|||+|||+|.++..+++.++++.+|+|+|+|+.+++.|++++...+.  +++++++|+.+. +. .++||+|+++
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~-~~-~~~fD~v~~~   96 (284)
T 3gu3_A           21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEI-EL-NDKYDIAICH   96 (284)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS--EEEEEESCTTTC-CC-SSCEEEEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcchhhc-Cc-CCCeeEEEEC
Confidence            3567999999999999999999763358999999999999999999887664  699999999763 22 4689999996


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG  331 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~  331 (371)
                      ...              .|-+            ....+++.+.+.|+|||++++....
T Consensus        97 ~~l--------------~~~~------------~~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           97 AFL--------------LHMT------------TPETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             SCG--------------GGCS------------SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             Chh--------------hcCC------------CHHHHHHHHHHHcCCCCEEEEEecc
Confidence            432              1111            1247888999999999999987643

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.53  E-value=3.2e-14  Score=143.12  Aligned_cols=155  Identities=20%  Similarity=0.251  Sum_probs=107.0

Q ss_pred             ccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhC------------CCcEEEEEeCCHHHHHHHH
Q 017476          170 FIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG------------SKGSIIAVDLNPLAAAVAA  237 (371)
Q Consensus       170 liPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~------------~~~~V~gvDis~~al~~A~  237 (371)
                      +.|++..+.+++.+        ....+.+|+|+|||||.+++.+++.+.            ...+++|+|+++.++++|+
T Consensus       154 yTP~~v~~~mv~~l--------~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~  225 (445)
T 2okc_A          154 FTPRPLIQAMVDCI--------NPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLAS  225 (445)
T ss_dssp             CCCHHHHHHHHHHH--------CCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHH
T ss_pred             cCcHHHHHHHHHHh--------CCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHH
Confidence            46777666665543        122456899999999999999987631            2357999999999999999


Q ss_pred             HHHHHcCCCC-cEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHh
Q 017476          238 FNAQRYGLQD-IIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTA  316 (371)
Q Consensus       238 ~n~~~~gl~~-~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~  316 (371)
                      .|+..+|+.. .+.++++|.+.....  ++||+|++||||........   ...+.+  .....+..    ...+++.+.
T Consensus       226 ~nl~l~g~~~~~~~i~~gD~l~~~~~--~~fD~Iv~NPPf~~~~~~~~---~~~~~~--~~~~~~~~----~~~fl~~~~  294 (445)
T 2okc_A          226 MNLYLHGIGTDRSPIVCEDSLEKEPS--TLVDVILANPPFGTRPAGSV---DINRPD--FYVETKNN----QLNFLQHMM  294 (445)
T ss_dssp             HHHHHTTCCSSCCSEEECCTTTSCCS--SCEEEEEECCCSSCCCTTCC---CCCCTT--SSSCCSCH----HHHHHHHHH
T ss_pred             HHHHHhCCCcCCCCEeeCCCCCCccc--CCcCEEEECCCCCCcccccc---hhhHhh--cCCCCcch----HHHHHHHHH
Confidence            9999999853 588999998775332  58999999999986543211   000111  11111111    235777778


Q ss_pred             cccccCcEEEEEECC-----cCcHHHHHHHHh
Q 017476          317 SMLKPGGFFAFETNG-----EKQCKFLKNYLE  343 (371)
Q Consensus       317 ~~LkpgG~lvle~~~-----~~q~~~v~~~l~  343 (371)
                      ++|+|||++++.++.     ..+...+++.+.
T Consensus       295 ~~Lk~gG~~a~V~p~~~L~~~~~~~~iR~~L~  326 (445)
T 2okc_A          295 LMLKTGGRAAVVLPDNVLFEAGAGETIRKRLL  326 (445)
T ss_dssp             HHEEEEEEEEEEEEHHHHHCSTHHHHHHHHHH
T ss_pred             HHhccCCEEEEEECCcccccCcHHHHHHHHHH
Confidence            999999999988742     124567777554

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.53  E-value=5.7e-14  Score=138.88  Aligned_cols=99  Identities=26%  Similarity=0.240  Sum_probs=80.6

Q ss_pred             chHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhC-----------------------------------
Q 017476          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG-----------------------------------  218 (371)
Q Consensus       174 p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~-----------------------------------  218 (371)
                      |..|.++..++...    ...++.+|||+|||||.+++.+|....                                   
T Consensus       178 pl~e~lAa~ll~~~----~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~  253 (385)
T 3ldu_A          178 PIRETLAAGLIYLT----PWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKID  253 (385)
T ss_dssp             CCCHHHHHHHHHTS----CCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSC
T ss_pred             CCcHHHHHHHHHhh----CCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhh
Confidence            45667777766544    333567899999999999999988631                                   


Q ss_pred             --CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCC
Q 017476          219 --SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIP  278 (371)
Q Consensus       219 --~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~  278 (371)
                        ...+|+|+|+|+.+++.|++|+..+|+.+.+++.++|+.+...  .++||+||+||||..
T Consensus       254 ~~~~~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~--~~~~D~Iv~NPPyg~  313 (385)
T 3ldu_A          254 NESKFKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKS--EDEFGFIITNPPYGE  313 (385)
T ss_dssp             CSCCCCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCC--SCBSCEEEECCCCCC
T ss_pred             ccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCc--CCCCcEEEECCCCcC
Confidence              1157999999999999999999999998789999999987543  368999999999973

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.53  E-value=3.3e-14  Score=129.13  Aligned_cols=106  Identities=18%  Similarity=0.262  Sum_probs=88.2

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccC--C---CceeE
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV--E---GKLSG  269 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~--~---~~fDl  269 (371)
                      ++.+|||+|||+|..++.+++.++++.+|+++|+++.+++.|++|++.+++.++++++++|+.+.+...  .   ++||+
T Consensus        69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~  148 (229)
T 2avd_A           69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV  148 (229)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccE
Confidence            356999999999999999999763478999999999999999999999998778999999987654322  1   68999


Q ss_pred             EEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          270 VVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       270 IvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      |++|+|..                             .+..+++.+.+.|+|||++++..
T Consensus       149 v~~d~~~~-----------------------------~~~~~l~~~~~~L~pgG~lv~~~  179 (229)
T 2avd_A          149 AVVDADKE-----------------------------NCSAYYERCLQLLRPGGILAVLR  179 (229)
T ss_dssp             EEECSCST-----------------------------THHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEECCCHH-----------------------------HHHHHHHHHHHHcCCCeEEEEEC
Confidence            99987621                             13367888889999999999954

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.53  E-value=7.2e-13  Score=121.85  Aligned_cols=106  Identities=25%  Similarity=0.231  Sum_probs=83.4

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      .++.+|||+|||+|.++..+++.   +.+|+|+|+|+.+++.|++|+...+.  +++++++|+.+...  .++||+|+++
T Consensus        40 ~~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~--~~~fD~v~~~  112 (252)
T 1wzn_A           40 REVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAF--KNEFDAVTMF  112 (252)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCC--CSCEEEEEEC
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChhhccc--CCCccEEEEc
Confidence            34679999999999999999984   56999999999999999999988875  49999999976422  3689999984


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      ....             .|.          ..+....+++.+.+.|+|||.++++.
T Consensus       113 ~~~~-------------~~~----------~~~~~~~~l~~~~~~L~pgG~li~~~  145 (252)
T 1wzn_A          113 FSTI-------------MYF----------DEEDLRKLFSKVAEALKPGGVFITDF  145 (252)
T ss_dssp             SSGG-------------GGS----------CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCch-------------hcC----------CHHHHHHHHHHHHHHcCCCeEEEEec
Confidence            2100             000          02345688899999999999999864

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.53  E-value=4.8e-14  Score=128.47  Aligned_cols=123  Identities=15%  Similarity=0.097  Sum_probs=94.3

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|.++..+++.   ..+|+|+|+|+.+++.|+++...     +++++++|+.+..  .+++||+|+++ 
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~~--~~~~fD~v~~~-  110 (250)
T 2p7i_A           42 RPGNLLELGSFKGDFTSRLQEH---FNDITCVEASEEAISHAQGRLKD-----GITYIHSRFEDAQ--LPRRYDNIVLT-  110 (250)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTT---CSCEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGCC--CSSCEEEEEEE-
T ss_pred             CCCcEEEECCCCCHHHHHHHHh---CCcEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHcC--cCCcccEEEEh-
Confidence            4568999999999999999885   24899999999999999987532     5999999997653  24789999994 


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHh-cccccCcEEEEEECCcC--------------------
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTA-SMLKPGGFFAFETNGEK--------------------  333 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~-~~LkpgG~lvle~~~~~--------------------  333 (371)
                                   .+..|-+            ....+++++. +.|||||++++...+..                    
T Consensus       111 -------------~~l~~~~------------~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (250)
T 2p7i_A          111 -------------HVLEHID------------DPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVT  165 (250)
T ss_dssp             -------------SCGGGCS------------SHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCC
T ss_pred             -------------hHHHhhc------------CHHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcc
Confidence                         1222321            1247899999 99999999999873321                    


Q ss_pred             ------------cHHHHHHHHhccccCCceeEEEE
Q 017476          334 ------------QCKFLKNYLENDSACSFCNVSIV  356 (371)
Q Consensus       334 ------------q~~~v~~~l~~~~~~gf~~v~~~  356 (371)
                                  ..+.+.+++++   .||..+++.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~l~~---~Gf~~~~~~  197 (250)
T 2p7i_A          166 EAEFAHGHRCTYALDTLERDASR---AGLQVTYRS  197 (250)
T ss_dssp             HHHHHTTCCCCCCHHHHHHHHHH---TTCEEEEEE
T ss_pred             cccccccccccCCHHHHHHHHHH---CCCeEEEEe
Confidence                        34567777875   789877764

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.53  E-value=2.5e-13  Score=127.59  Aligned_cols=112  Identities=21%  Similarity=0.289  Sum_probs=88.7

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|.++..+++.  +..+|+|+|+|+.+++.|++++...++..+++++++|+.+......++||+|+++-
T Consensus        64 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~  141 (298)
T 1ri5_A           64 RGDSVLDLGCGKGGDLLKYERA--GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF  141 (298)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHH--TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred             CCCeEEEECCCCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence            4679999999999999998885  45699999999999999999999888877899999999764221247899999962


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN  330 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~  330 (371)
                      ..              .|-        .........+++.+.+.|+|||++++.+.
T Consensus       142 ~l--------------~~~--------~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  175 (298)
T 1ri5_A          142 SF--------------HYA--------FSTSESLDIAQRNIARHLRPGGYFIMTVP  175 (298)
T ss_dssp             CG--------------GGG--------GSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             hh--------------hhh--------cCCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            21              110        00134566899999999999999998874

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.53  E-value=4e-13  Score=131.20  Aligned_cols=144  Identities=17%  Similarity=0.144  Sum_probs=110.0

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      .++.+|||+|||+|.++..+++.+ ++.+++++|+ +.+++.|++|+...++.++++++.+|+++.++   ..||+|+++
T Consensus       181 ~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~D~v~~~  255 (374)
T 1qzz_A          181 SAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLP---VTADVVLLS  255 (374)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS---CCEEEEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHC-CCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcCC---CCCCEEEEe
Confidence            356799999999999999999986 7889999999 99999999999999988789999999987554   349999996


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC--C--c-----------------
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN--G--E-----------------  332 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~--~--~-----------------  332 (371)
                      ..+.              |-+          -.....+++.+.+.|+|||++++...  .  .                 
T Consensus       256 ~vl~--------------~~~----------~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~  311 (374)
T 1qzz_A          256 FVLL--------------NWS----------DEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTF  311 (374)
T ss_dssp             SCGG--------------GSC----------HHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHH
T ss_pred             cccc--------------CCC----------HHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHh
Confidence            4321              111          12234788999999999998887442  1  1                 


Q ss_pred             -----CcHHHHHHHHhccccCCceeEEEEecCCCCc-----eEEEEEe
Q 017476          333 -----KQCKFLKNYLENDSACSFCNVSIVSDFAGIQ-----RFVTGFR  370 (371)
Q Consensus       333 -----~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~-----R~~~a~~  370 (371)
                           ...+++.+++++   .||..+++..- .+..     .++.+++
T Consensus       312 ~~~~~~~~~~~~~ll~~---aGf~~~~~~~~-~~~~~~~~~~~i~~~~  355 (374)
T 1qzz_A          312 MGGRVRTRDEVVDLAGS---AGLALASERTS-GSTTLPFDFSILEFTA  355 (374)
T ss_dssp             HSCCCCCHHHHHHHHHT---TTEEEEEEEEE-CCSSCSSCEEEEEEEE
T ss_pred             CCCcCCCHHHHHHHHHH---CCCceEEEEEC-CCCcccCCcEEEEEEE
Confidence                 244566777775   78988887754 4444     7777765

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.52  E-value=1e-13  Score=132.05  Aligned_cols=143  Identities=13%  Similarity=0.064  Sum_probs=100.2

Q ss_pred             CCCCCCeEEEECCcccHHH-HHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEE
Q 017476          192 DGLRDGFWVDLGTGSGAIA-IGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGV  270 (371)
Q Consensus       192 ~~~~~~~VLDlG~GsG~~a-l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlI  270 (371)
                      ...++.+|||+|||+|.++ +.+|+ . ++++|+|+|+|+++++.|++|++..|+ ++++++++|..+. +  .+.||+|
T Consensus       119 ~l~~g~rVLDIGcG~G~~ta~~lA~-~-~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l-~--d~~FDvV  192 (298)
T 3fpf_A          119 RFRRGERAVFIGGGPLPLTGILLSH-V-YGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVI-D--GLEFDVL  192 (298)
T ss_dssp             TCCTTCEEEEECCCSSCHHHHHHHH-T-TCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGG-G--GCCCSEE
T ss_pred             CCCCcCEEEEECCCccHHHHHHHHH-c-cCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhC-C--CCCcCEE
Confidence            3446789999999998765 44555 3 678999999999999999999999998 6899999999763 3  3789999


Q ss_pred             EEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCc
Q 017476          271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSF  350 (371)
Q Consensus       271 vsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf  350 (371)
                      +++--                             ......+++.+.+.|||||++++.... .....+..........+|
T Consensus       193 ~~~a~-----------------------------~~d~~~~l~el~r~LkPGG~Lvv~~~~-~~r~~l~~~v~~~~~~gf  242 (298)
T 3fpf_A          193 MVAAL-----------------------------AEPKRRVFRNIHRYVDTETRIIYRTYT-GMRAILYAPVSDDDITGF  242 (298)
T ss_dssp             EECTT-----------------------------CSCHHHHHHHHHHHCCTTCEEEEEECC-GGGGGSSCCCCTGGGTTE
T ss_pred             EECCC-----------------------------ccCHHHHHHHHHHHcCCCcEEEEEcCc-chhhhccccCChhhhhhh
Confidence            97310                             011347888899999999999998732 111100000000112579


Q ss_pred             eeEEEEecCC-CCceEEEEEe
Q 017476          351 CNVSIVSDFA-GIQRFVTGFR  370 (371)
Q Consensus       351 ~~v~~~~Dl~-g~~R~~~a~~  370 (371)
                      .......... -...+++++|
T Consensus       243 ~~~~~~~p~~~v~N~vv~a~k  263 (298)
T 3fpf_A          243 RRAGVVLPSGKVNNTSVLVFK  263 (298)
T ss_dssp             EEEEEECCCTTCCCEEEEEEE
T ss_pred             hheeEECCCCCcCcEEEEEEc
Confidence            7655544333 2677888876

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.52  E-value=2.7e-13  Score=118.80  Aligned_cols=129  Identities=15%  Similarity=0.079  Sum_probs=99.8

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|.++..+++.   +.+++|+|+|+.+++.|++|..      +++++++|+.+. +...++||+|++||
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~~~~~~~~a~~~~~------~~~~~~~d~~~~-~~~~~~~D~i~~~~  115 (195)
T 3cgg_A           46 RGAKILDAGCGQGRIGGYLSKQ---GHDVLGTDLDPILIDYAKQDFP------EARWVVGDLSVD-QISETDFDLIVSAG  115 (195)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHCT------TSEEEECCTTTS-CCCCCCEEEEEECC
T ss_pred             CCCeEEEECCCCCHHHHHHHHC---CCcEEEEcCCHHHHHHHHHhCC------CCcEEEcccccC-CCCCCceeEEEECC
Confidence            4569999999999999999985   4699999999999999998752      389999998763 22246899999987


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcC--cHHHHHHHHhccccCCcee
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEK--QCKFLKNYLENDSACSFCN  352 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~--q~~~v~~~l~~~~~~gf~~  352 (371)
                      +....     +.                  .+....+++.+.+.|+|||.+++......  ..+.+.+++++   .||..
T Consensus       116 ~~~~~-----~~------------------~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~---~Gf~~  169 (195)
T 3cgg_A          116 NVMGF-----LA------------------EDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAER---VGLEL  169 (195)
T ss_dssp             CCGGG-----SC------------------HHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHH---HTEEE
T ss_pred             cHHhh-----cC------------------hHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHH---cCCEE
Confidence            65311     10                  12345788999999999999999875332  46778888885   68988


Q ss_pred             EEEEecC
Q 017476          353 VSIVSDF  359 (371)
Q Consensus       353 v~~~~Dl  359 (371)
                      +++..++
T Consensus       170 ~~~~~~~  176 (195)
T 3cgg_A          170 ENAFESW  176 (195)
T ss_dssp             EEEESST
T ss_pred             eeeeccc
Confidence            8877664

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.52  E-value=3.1e-13  Score=120.31  Aligned_cols=136  Identities=18%  Similarity=0.146  Sum_probs=101.0

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCC
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP  275 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPP  275 (371)
                      +.+|||+|||+|.++..+++.   +.+|+|+|+|+.+++.|+++.      .+++++++|+.+. +...++||+|+++-.
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~-~~~~~~fD~v~~~~~  111 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL---GHQIEGLEPATRLVELARQTH------PSVTFHHGTITDL-SDSPKRWAGLLAWYS  111 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT---TCCEEEECCCHHHHHHHHHHC------TTSEEECCCGGGG-GGSCCCEEEEEEESS
T ss_pred             CCeEEEecCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHhC------CCCeEEeCccccc-ccCCCCeEEEEehhh
Confidence            568999999999999999985   468999999999999999872      2589999999763 333579999999643


Q ss_pred             CCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCc---------------CcHHHHHH
Q 017476          276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGE---------------KQCKFLKN  340 (371)
Q Consensus       276 Yi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~---------------~q~~~v~~  340 (371)
                      +.              |-+          .+....+++.+.+.|+|||++++.....               ...+.+.+
T Consensus       112 l~--------------~~~----------~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (203)
T 3h2b_A          112 LI--------------HMG----------PGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQ  167 (203)
T ss_dssp             ST--------------TCC----------TTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHH
T ss_pred             Hh--------------cCC----------HHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHH
Confidence            21              111          0124478889999999999999987432               23688899


Q ss_pred             HHhccccCCceeEEEEecCCCCceEEEE
Q 017476          341 YLENDSACSFCNVSIVSDFAGIQRFVTG  368 (371)
Q Consensus       341 ~l~~~~~~gf~~v~~~~Dl~g~~R~~~a  368 (371)
                      ++++   .||..+++..--.....++..
T Consensus       168 ~l~~---~Gf~~~~~~~~~~~p~~~l~~  192 (203)
T 3h2b_A          168 ALET---AGFQVTSSHWDPRFPHAYLTA  192 (203)
T ss_dssp             HHHH---TTEEEEEEEECTTSSEEEEEE
T ss_pred             HHHH---CCCcEEEEEecCCCcchhhhh
Confidence            9986   789887776544433334433

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.52  E-value=1.8e-13  Score=122.93  Aligned_cols=137  Identities=18%  Similarity=0.176  Sum_probs=101.7

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccc---cccCCCceeEEE
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK---LKDVEGKLSGVV  271 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~---l~~~~~~fDlIv  271 (371)
                      ++.+|||+|||+|.++..+++.   +.+|+|+|+|+.+++.|+++       .++.+..+|+.+.   .....++||+|+
T Consensus        52 ~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~fD~v~  121 (227)
T 3e8s_A           52 QPERVLDLGCGEGWLLRALADR---GIEAVGVDGDRTLVDAARAA-------GAGEVHLASYAQLAEAKVPVGKDYDLIC  121 (227)
T ss_dssp             CCSEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHT-------CSSCEEECCHHHHHTTCSCCCCCEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHC---CCEEEEEcCCHHHHHHHHHh-------cccccchhhHHhhcccccccCCCccEEE
Confidence            3579999999999999999885   56999999999999999987       2377888887653   112235699999


Q ss_pred             EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC--------------------
Q 017476          272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG--------------------  331 (371)
Q Consensus       272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~--------------------  331 (371)
                      ++..+. ..+                          ...+++.+.+.|+|||++++...+                    
T Consensus       122 ~~~~l~-~~~--------------------------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (227)
T 3e8s_A          122 ANFALL-HQD--------------------------IIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAG  174 (227)
T ss_dssp             EESCCC-SSC--------------------------CHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTT
T ss_pred             ECchhh-hhh--------------------------HHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhc
Confidence            976554 111                          126788889999999999997631                    


Q ss_pred             -----------cCcHHHHHHHHhccccCCceeEEEEe-cCCCC----ceEEEEEeC
Q 017476          332 -----------EKQCKFLKNYLENDSACSFCNVSIVS-DFAGI----QRFVTGFRQ  371 (371)
Q Consensus       332 -----------~~q~~~v~~~l~~~~~~gf~~v~~~~-Dl~g~----~R~~~a~~~  371 (371)
                                 ....+.+.+++++   .||..+++.. ...+.    ..+++++|+
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~l~~---aGf~~~~~~~~~~~~~~~~~~~~~va~k~  227 (227)
T 3e8s_A          175 FAGDWQPMPWYFRTLASWLNALDM---AGLRLVSLQEPQHPQSAVPQSLLMVAERH  227 (227)
T ss_dssp             SSSCCCCEEEEECCHHHHHHHHHH---TTEEEEEEECCCCTTCSSCSCEEEEEEEC
T ss_pred             cccCcccceEEEecHHHHHHHHHH---cCCeEEEEecCCCCCCCCceeEEEEeecC
Confidence                       1146788888886   8898888765 22222    567777764

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.51  E-value=1.7e-13  Score=123.99  Aligned_cols=132  Identities=22%  Similarity=0.220  Sum_probs=101.8

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC----CCcEEEEEcCcccccccCCCceeEE
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGL----QDIIEIRQGSWFGKLKDVEGKLSGV  270 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl----~~~v~~~~gD~~~~l~~~~~~fDlI  270 (371)
                      ++.+|||+|||+|.++..+++.   +.+|+|+|+|+.+++.|++++...++    .++++++.+|+.+. +...++||+|
T Consensus        30 ~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v  105 (235)
T 3sm3_A           30 EDDEILDIGCGSGKISLELASK---GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSL-SFHDSSFDFA  105 (235)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSC-CSCTTCEEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEeccccc-CCCCCceeEE
Confidence            4569999999999999999985   56999999999999999999887776    23689999998753 3335789999


Q ss_pred             EEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC-------------------
Q 017476          271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG-------------------  331 (371)
Q Consensus       271 vsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~-------------------  331 (371)
                      +++..+.              |-+.         ......+++.+.+.|+|||.+++...+                   
T Consensus       106 ~~~~~l~--------------~~~~---------~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~  162 (235)
T 3sm3_A          106 VMQAFLT--------------SVPD---------PKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPIT  162 (235)
T ss_dssp             EEESCGG--------------GCCC---------HHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHH
T ss_pred             EEcchhh--------------cCCC---------HHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccch
Confidence            9974432              1110         233447889999999999999986421                   


Q ss_pred             ---------------------cCcHHHHHHHHhccccCCceeEEEE
Q 017476          332 ---------------------EKQCKFLKNYLENDSACSFCNVSIV  356 (371)
Q Consensus       332 ---------------------~~q~~~v~~~l~~~~~~gf~~v~~~  356 (371)
                                           ....+++.+++++   .||..+++.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~---aGf~~~~~~  205 (235)
T 3sm3_A          163 KEEGSFLARDPETGETEFIAHHFTEKELVFLLTD---CRFEIDYFR  205 (235)
T ss_dssp             CSTTEEEEECTTTCCEEEEEECBCHHHHHHHHHT---TTEEEEEEE
T ss_pred             hhhcceEecccccCCcceeeEeCCHHHHHHHHHH---cCCEEEEEE
Confidence                                 2356788889886   789887764

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.51  E-value=6.1e-13  Score=122.68  Aligned_cols=159  Identities=16%  Similarity=0.079  Sum_probs=105.6

Q ss_pred             HHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcc
Q 017476          178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF  257 (371)
Q Consensus       178 ~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~  257 (371)
                      .+...++..+ ......++.+|||+|||+|..+..+|+..++.++|+|+|+++.+++...+.++..   .++.++.+|..
T Consensus        60 kla~~ll~~l-~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~Da~  135 (232)
T 3id6_C           60 KLAGAILKGL-KTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLADAR  135 (232)
T ss_dssp             HHHHHHHTTC-SCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---TTEEEEECCTT
T ss_pred             HHHHHHHhhh-hhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEcccc
Confidence            3444444444 2223456789999999999999999998777889999999999976555554443   24999999987


Q ss_pred             cccc--cCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC----
Q 017476          258 GKLK--DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG----  331 (371)
Q Consensus       258 ~~l~--~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~----  331 (371)
                      .+..  ...++||+|++|-+..                            +....+...+.+.|||||++++.+..    
T Consensus       136 ~~~~~~~~~~~~D~I~~d~a~~----------------------------~~~~il~~~~~~~LkpGG~lvisik~~~~d  187 (232)
T 3id6_C          136 FPQSYKSVVENVDVLYVDIAQP----------------------------DQTDIAIYNAKFFLKVNGDMLLVIKARSID  187 (232)
T ss_dssp             CGGGTTTTCCCEEEEEECCCCT----------------------------THHHHHHHHHHHHEEEEEEEEEEEC-----
T ss_pred             cchhhhccccceEEEEecCCCh----------------------------hHHHHHHHHHHHhCCCCeEEEEEEccCCcc
Confidence            6432  2246899999985531                            00113445566699999999987521    


Q ss_pred             -----cCcHHHHHHHHhccccCCceeEEEEec--CCCCceEEEEEeC
Q 017476          332 -----EKQCKFLKNYLENDSACSFCNVSIVSD--FAGIQRFVTGFRQ  371 (371)
Q Consensus       332 -----~~q~~~v~~~l~~~~~~gf~~v~~~~D--l~g~~R~~~a~~~  371 (371)
                           ....+.+.+.|++   +||.-++...-  +....-+++++++
T Consensus       188 ~t~~~~e~~~~~~~~L~~---~gf~~~~~~~l~p~~~~h~~v~~~~~  231 (232)
T 3id6_C          188 VTKDPKEIYKTEVEKLEN---SNFETIQIINLDPYDKDHAIVLSKYK  231 (232)
T ss_dssp             --CCSSSSTTHHHHHHHH---TTEEEEEEEECTTTCSSCEEEEEEEC
T ss_pred             cCCCHHHHHHHHHHHHHH---CCCEEEEEeccCCCcCceEEEEEEeC
Confidence                 1122445566664   67977766532  2334556677663

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.51  E-value=2.6e-13  Score=119.76  Aligned_cols=127  Identities=19%  Similarity=0.162  Sum_probs=95.9

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|.++..+++.   +.+|+|+|+|+.+++.|++++...++++ ++++.+|+.+.. . .++||+|+++.
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~d~~~~~-~-~~~~D~v~~~~  105 (199)
T 2xvm_A           32 KPGKTLDLGCGNGRNSLYLAAN---GYDVDAWDKNAMSIANVERIKSIENLDN-LHTRVVDLNNLT-F-DRQYDFILSTV  105 (199)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCTT-EEEEECCGGGCC-C-CCCEEEEEEES
T ss_pred             CCCeEEEEcCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhCCCCC-cEEEEcchhhCC-C-CCCceEEEEcc
Confidence            4679999999999999999985   4699999999999999999999888754 999999987642 2 57899999975


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC-C------------cCcHHHHHHH
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN-G------------EKQCKFLKNY  341 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~-~------------~~q~~~v~~~  341 (371)
                      .+..      +..                  +....+++.+.+.|+|||++++... .            ....+++.++
T Consensus       106 ~l~~------~~~------------------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  161 (199)
T 2xvm_A          106 VLMF------LEA------------------KTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRY  161 (199)
T ss_dssp             CGGG------SCG------------------GGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHH
T ss_pred             hhhh------CCH------------------HHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHH
Confidence            4321      111                  1234788899999999999776431 1            1144667787


Q ss_pred             HhccccCCceeEEEE
Q 017476          342 LENDSACSFCNVSIV  356 (371)
Q Consensus       342 l~~~~~~gf~~v~~~  356 (371)
                      +.    . |..++..
T Consensus       162 ~~----~-f~~~~~~  171 (199)
T 2xvm_A          162 YE----G-WERVKYN  171 (199)
T ss_dssp             TT----T-SEEEEEE
T ss_pred             hc----C-CeEEEec
Confidence            76    2 7655543

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.51  E-value=9.7e-14  Score=136.89  Aligned_cols=103  Identities=14%  Similarity=0.081  Sum_probs=87.1

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc---------------CCCCcEEEEEcCcccc
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY---------------GLQDIIEIRQGSWFGK  259 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~---------------gl~~~v~~~~gD~~~~  259 (371)
                      .+.+|||+|||+|.+++.++++. +..+|+++|+++.+++.|++|++.+               ++.+ ++++++|+.+.
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~-~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~-i~v~~~Da~~~  124 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALET-PAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKT-IVINHDDANRL  124 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHS-SCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSE-EEEEESCHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCc-eEEEcCcHHHH
Confidence            35699999999999999999985 5678999999999999999999999               8765 99999999775


Q ss_pred             cccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          260 LKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       260 l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      +....++||+|+.|||+..                              ..+++.+.+.|++||++++.+
T Consensus       125 ~~~~~~~fD~I~lDP~~~~------------------------------~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          125 MAERHRYFHFIDLDPFGSP------------------------------MEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             HHHSTTCEEEEEECCSSCC------------------------------HHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHhccCCCCEEEeCCCCCH------------------------------HHHHHHHHHhcCCCCEEEEEe
Confidence            5433458999999987531                              157778888999999998876

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.51  E-value=4.5e-13  Score=115.08  Aligned_cols=144  Identities=20%  Similarity=0.238  Sum_probs=103.3

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc-----c--cCCCce
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL-----K--DVEGKL  267 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l-----~--~~~~~f  267 (371)
                      ++.+|||+|||+|.++..+++.++++.+++|+|+++ +++.           .+++++++|+.+..     .  ...++|
T Consensus        22 ~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-----------~~~~~~~~d~~~~~~~~~~~~~~~~~~~   89 (180)
T 1ej0_A           22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-----------VGVDFLQGDFRDELVMKALLERVGDSKV   89 (180)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-----------TTEEEEESCTTSHHHHHHHHHHHTTCCE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-----------CcEEEEEcccccchhhhhhhccCCCCce
Confidence            467999999999999999999865668999999999 6532           35999999997641     0  123689


Q ss_pred             eEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhcccc
Q 017476          268 SGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSA  347 (371)
Q Consensus       268 DlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~  347 (371)
                      |+|++|+|+.......   .+...            .......+++.+.++|+|||.+++......+...+.+.+.+   
T Consensus        90 D~i~~~~~~~~~~~~~---~~~~~------------~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~---  151 (180)
T 1ej0_A           90 QVVMSDMAPNMSGTPA---VDIPR------------AMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS---  151 (180)
T ss_dssp             EEEEECCCCCCCSCHH---HHHHH------------HHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHH---
T ss_pred             eEEEECCCccccCCCc---cchHH------------HHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHH---
Confidence            9999999976433210   00000            01223588899999999999999987666677777777774   


Q ss_pred             CCceeEEEEecCCC----CceEEEEE
Q 017476          348 CSFCNVSIVSDFAG----IQRFVTGF  369 (371)
Q Consensus       348 ~gf~~v~~~~Dl~g----~~R~~~a~  369 (371)
                       .|..+++.+....    .+.+++++
T Consensus       152 -~~~~~~~~~~~~~~~~~~~~~~~~~  176 (180)
T 1ej0_A          152 -LFTKVKVRKPDSSRARSREVYIVAT  176 (180)
T ss_dssp             -HEEEEEEECCTTSCTTCCEEEEEEE
T ss_pred             -hhhhEEeecCCcccccCceEEEEEc
Confidence             3888888766543    34455554

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.51  E-value=1.7e-13  Score=129.88  Aligned_cols=121  Identities=15%  Similarity=0.091  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC--CcEEEEEc
Q 017476          177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ--DIIEIRQG  254 (371)
Q Consensus       177 e~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~--~~v~~~~g  254 (371)
                      ...+..+++.+ .    ..+.+|||+|||+|.++..+++.   +.+|+|+|+|+.+++.|++++...++.  .+++++++
T Consensus        69 ~~~~~~~~~~~-~----~~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~  140 (299)
T 3g2m_A           69 TSEAREFATRT-G----PVSGPVLELAAGMGRLTFPFLDL---GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQG  140 (299)
T ss_dssp             HHHHHHHHHHH-C----CCCSCEEEETCTTTTTHHHHHTT---TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEEC
T ss_pred             cHHHHHHHHhh-C----CCCCcEEEEeccCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeC
Confidence            44455555554 1    13459999999999999999985   478999999999999999999876642  46999999


Q ss_pred             CcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC
Q 017476          255 SWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN  330 (371)
Q Consensus       255 D~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~  330 (371)
                      |+.+. +. .++||+|++..             .+..|-+          -+....+++.+.+.|+|||++++...
T Consensus       141 d~~~~-~~-~~~fD~v~~~~-------------~~~~~~~----------~~~~~~~l~~~~~~L~pgG~l~~~~~  191 (299)
T 3g2m_A          141 DMSAF-AL-DKRFGTVVISS-------------GSINELD----------EADRRGLYASVREHLEPGGKFLLSLA  191 (299)
T ss_dssp             BTTBC-CC-SCCEEEEEECH-------------HHHTTSC----------HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             chhcC-Cc-CCCcCEEEECC-------------cccccCC----------HHHHHHHHHHHHHHcCCCcEEEEEee
Confidence            99773 22 57899998621             1111111          13355889999999999999999763

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.51  E-value=3.2e-13  Score=126.98  Aligned_cols=104  Identities=14%  Similarity=0.102  Sum_probs=85.5

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|.++..+++.   +.+|+|+|+|+.+++.|++++..+++  +++++++|+.+...  .++||+|++|.
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~---g~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~--~~~fD~i~~~~  192 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLL---GYDVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANI--QENYDFIVSTV  192 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCC--CSCEEEEEECS
T ss_pred             CCCcEEEECCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccc--cCCccEEEEcc
Confidence            4679999999999999999985   46999999999999999999999987  59999999976433  57899999987


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      ++..      +..                  .....+++.+.+.|+|||.+++..
T Consensus       193 ~~~~------~~~------------------~~~~~~l~~~~~~LkpgG~l~i~~  223 (286)
T 3m70_A          193 VFMF------LNR------------------ERVPSIIKNMKEHTNVGGYNLIVA  223 (286)
T ss_dssp             SGGG------SCG------------------GGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             chhh------CCH------------------HHHHHHHHHHHHhcCCCcEEEEEE
Confidence            6531      111                  123478889999999999988754

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.51  E-value=5e-13  Score=122.61  Aligned_cols=106  Identities=21%  Similarity=0.224  Sum_probs=85.0

Q ss_pred             CCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEE
Q 017476          193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS  272 (371)
Q Consensus       193 ~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvs  272 (371)
                      ..++.+|||+|||+|.++..+++..   .+|+|+|+|+.+++.|++++...+++ +++++++|+.+ ++...++||+|++
T Consensus        19 ~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~-~~~~~~~fD~v~~   93 (239)
T 1xxl_A           19 CRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAES-LPFPDDSFDIITC   93 (239)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTB-CCSCTTCEEEEEE
T ss_pred             cCCCCEEEEEccCcCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEeccccc-CCCCCCcEEEEEE
Confidence            3457799999999999999998863   59999999999999999999998876 49999999865 3333578999999


Q ss_pred             cCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       273 NPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      +-..              .|-+            ....+++.+.+.|+|||++++..
T Consensus        94 ~~~l--------------~~~~------------~~~~~l~~~~~~LkpgG~l~~~~  124 (239)
T 1xxl_A           94 RYAA--------------HHFS------------DVRKAVREVARVLKQDGRFLLVD  124 (239)
T ss_dssp             ESCG--------------GGCS------------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCch--------------hhcc------------CHHHHHHHHHHHcCCCcEEEEEE
Confidence            5221              1211            13478889999999999999854

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.50  E-value=1.4e-13  Score=136.19  Aligned_cols=122  Identities=18%  Similarity=0.200  Sum_probs=90.8

Q ss_pred             hHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH-------HcCC-C
Q 017476          175 ETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ-------RYGL-Q  246 (371)
Q Consensus       175 ~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~-------~~gl-~  246 (371)
                      .....+..+++.+    ...++.+|||||||+|.+++.+|... +..+|+|||+|+.++++|++|++       .+|+ .
T Consensus       157 t~~~~i~~il~~l----~l~~gd~VLDLGCGtG~l~l~lA~~~-g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~  231 (438)
T 3uwp_A          157 TSFDLVAQMIDEI----KMTDDDLFVDLGSGVGQVVLQVAAAT-NCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKH  231 (438)
T ss_dssp             THHHHHHHHHHHH----CCCTTCEEEEESCTTSHHHHHHHHHC-CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCC
T ss_pred             CCHHHHHHHHHhc----CCCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            3445556566555    34467799999999999999999875 55579999999999999998753       4566 3


Q ss_pred             CcEEEEEcCccccccc-CCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEE
Q 017476          247 DIIEIRQGSWFGKLKD-VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFF  325 (371)
Q Consensus       247 ~~v~~~~gD~~~~l~~-~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~l  325 (371)
                      ++++|+++|+.+.... ....||+|++|++|...                           .....+.++.+.|||||.|
T Consensus       232 ~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~F~p---------------------------dl~~aL~Ei~RvLKPGGrI  284 (438)
T 3uwp_A          232 AEYTLERGDFLSEEWRERIANTSVIFVNNFAFGP---------------------------EVDHQLKERFANMKEGGRI  284 (438)
T ss_dssp             CEEEEEECCTTSHHHHHHHHTCSEEEECCTTCCH---------------------------HHHHHHHHHHTTSCTTCEE
T ss_pred             CCeEEEECcccCCccccccCCccEEEEcccccCc---------------------------hHHHHHHHHHHcCCCCcEE
Confidence            6799999999763211 01369999999987521                           1224556677999999999


Q ss_pred             EEE
Q 017476          326 AFE  328 (371)
Q Consensus       326 vle  328 (371)
                      ++.
T Consensus       285 Vss  287 (438)
T 3uwp_A          285 VSS  287 (438)
T ss_dssp             EES
T ss_pred             EEe
Confidence            874

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.50  E-value=9.2e-14  Score=126.15  Aligned_cols=136  Identities=17%  Similarity=0.173  Sum_probs=102.7

Q ss_pred             cccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhC----CCcEEEEEeCCHHH
Q 017476          157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG----SKGSIIAVDLNPLA  232 (371)
Q Consensus       157 ~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~----~~~~V~gvDis~~a  232 (371)
                      .|++..+.+..+..+++|.+.   ..+++.+ .. ...++.+|||+|||+|.++..+++..+    +..+|+|+|+++.+
T Consensus        47 ~y~d~~~~~~~~~~~~~p~~~---~~~~~~l-~~-~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~  121 (227)
T 2pbf_A           47 PYIDTPVYISHGVTISAPHMH---ALSLKRL-IN-VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDL  121 (227)
T ss_dssp             TTSSSCEEEETTEEECCHHHH---HHHHHHH-TT-TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHH
T ss_pred             cCCCCccccCCCCccCChHHH---HHHHHHH-Hh-hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHH
Confidence            566777888888888776543   3333333 11 123467999999999999999999864    45799999999999


Q ss_pred             HHHHHHHHHHcCC----CCcEEEEEcCccccc----ccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCc
Q 017476          233 AAVAAFNAQRYGL----QDIIEIRQGSWFGKL----KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDG  304 (371)
Q Consensus       233 l~~A~~n~~~~gl----~~~v~~~~gD~~~~l----~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dG  304 (371)
                      ++.|++|+..+++    .++++++.+|+.+..    .. .++||+|+++.++.                           
T Consensus       122 ~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~fD~I~~~~~~~---------------------------  173 (227)
T 2pbf_A          122 VNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKE-LGLFDAIHVGASAS---------------------------  173 (227)
T ss_dssp             HHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHH-HCCEEEEEECSBBS---------------------------
T ss_pred             HHHHHHHHHHcCccccccCCEEEEECChHhcccccCcc-CCCcCEEEECCchH---------------------------
Confidence            9999999998873    346999999997743    22 36899999976542                           


Q ss_pred             HHHHHHHHHHHhcccccCcEEEEEEC
Q 017476          305 LDYLLHLCNGTASMLKPGGFFAFETN  330 (371)
Q Consensus       305 l~~~~~il~~a~~~LkpgG~lvle~~  330 (371)
                           .+++.+.+.|+|||++++.++
T Consensus       174 -----~~~~~~~~~LkpgG~lv~~~~  194 (227)
T 2pbf_A          174 -----ELPEILVDLLAENGKLIIPIE  194 (227)
T ss_dssp             -----SCCHHHHHHEEEEEEEEEEEE
T ss_pred             -----HHHHHHHHhcCCCcEEEEEEc
Confidence                 122455689999999999984

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.50  E-value=6.3e-13  Score=129.48  Aligned_cols=144  Identities=16%  Similarity=0.166  Sum_probs=110.7

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      .++.+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.|++|+...++.++++++.+|+++. +.  ..+|+|+++
T Consensus       189 ~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~--~~~D~v~~~  263 (359)
T 1x19_A          189 DGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE-SY--PEADAVLFC  263 (359)
T ss_dssp             TTCCEEEEESCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTS-CC--CCCSEEEEE
T ss_pred             CCCCEEEEECCcccHHHHHHHHHC-CCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccC-CC--CCCCEEEEe
Confidence            356799999999999999999986 7889999999 999999999999999888899999999874 22  234999984


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE-C---------------------C
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET-N---------------------G  331 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~-~---------------------~  331 (371)
                      -.+              .+-+          -+....+++.+.+.|+|||++++.. .                     +
T Consensus       264 ~vl--------------h~~~----------d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g  319 (359)
T 1x19_A          264 RIL--------------YSAN----------EQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMP  319 (359)
T ss_dssp             SCG--------------GGSC----------HHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSS
T ss_pred             chh--------------ccCC----------HHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCC
Confidence            322              1111          1335589999999999999996533 1                     1


Q ss_pred             -c----CcHHHHHHHHhccccCCceeEEEEecCCCCceEEEEEeC
Q 017476          332 -E----KQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFRQ  371 (371)
Q Consensus       332 -~----~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~~~  371 (371)
                       .    ...+++.+++++   .||..+++..- . ..+++.++|+
T Consensus       320 ~~~~~~~t~~e~~~ll~~---aGf~~v~~~~~-~-~~~vi~a~kp  359 (359)
T 1x19_A          320 FSVLGFKEQARYKEILES---LGYKDVTMVRK-Y-DHLLVQAVKP  359 (359)
T ss_dssp             CCCCCCCCGGGHHHHHHH---HTCEEEEEEEE-T-TEEEEEEECC
T ss_pred             CcccCCCCHHHHHHHHHH---CCCceEEEEec-C-CceEEEEeCC
Confidence             0    345567778875   68998888763 3 6788888874

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.50  E-value=1.1e-13  Score=123.59  Aligned_cols=141  Identities=14%  Similarity=0.152  Sum_probs=98.3

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc------CC----
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD------VE----  264 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~------~~----  264 (371)
                      ++.+|||+|||+|.++..+++.   .++|+|+|+++..           .. .+++++++|+.+....      ..    
T Consensus        25 ~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~~-----------~~-~~v~~~~~D~~~~~~~~~~~~~~~~~~~   89 (191)
T 3dou_A           25 KGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEME-----------EI-AGVRFIRCDIFKETIFDDIDRALREEGI   89 (191)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCCC-----------CC-TTCEEEECCTTSSSHHHHHHHHHHHHTC
T ss_pred             CCCEEEEEeecCCHHHHHHHHc---CCcEEEEeccccc-----------cC-CCeEEEEccccCHHHHHHHHHHhhcccC
Confidence            4679999999999999999885   6799999999842           22 3599999998764210      11    


Q ss_pred             CceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhc
Q 017476          265 GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLEN  344 (371)
Q Consensus       265 ~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~  344 (371)
                      ++||+|+||++.......   ..   .+         ...+.....+++.+.++|||||.+++.+........+...++.
T Consensus        90 ~~~D~Vlsd~~~~~~g~~---~~---d~---------~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~  154 (191)
T 3dou_A           90 EKVDDVVSDAMAKVSGIP---SR---DH---------AVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRK  154 (191)
T ss_dssp             SSEEEEEECCCCCCCSCH---HH---HH---------HHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGG
T ss_pred             CcceEEecCCCcCCCCCc---cc---CH---------HHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHH
Confidence            489999999864322110   00   00         0113456688999999999999999988544445667777763


Q ss_pred             cccCCceeEEEEecCCCC----ceEEEEE
Q 017476          345 DSACSFCNVSIVSDFAGI----QRFVTGF  369 (371)
Q Consensus       345 ~~~~gf~~v~~~~Dl~g~----~R~~~a~  369 (371)
                          .|..|++.++.+++    +.|++++
T Consensus       155 ----~F~~v~~~kP~asR~~s~E~y~v~~  179 (191)
T 3dou_A          155 ----NFSSYKISKPPASRGSSSEIYIMFF  179 (191)
T ss_dssp             ----GEEEEEEECC------CCEEEEEEE
T ss_pred             ----hcCEEEEECCCCccCCCceEEEEEe
Confidence                59999999998774    4566665

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.50  E-value=1.3e-13  Score=132.49  Aligned_cols=130  Identities=18%  Similarity=0.232  Sum_probs=97.7

Q ss_pred             EeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc
Q 017476          164 SVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY  243 (371)
Q Consensus       164 ~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~  243 (371)
                      .++++.+........+.+.+++.+    ...++.+|||+|||+|.++..+++......+|+|+|+|+++++.|++|+..+
T Consensus        48 ~l~~~~f~q~~~~~~~~~~l~~~l----~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~  123 (317)
T 1dl5_A           48 SYDDGEEYSTSSQPSLMALFMEWV----GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERL  123 (317)
T ss_dssp             EEECSSCEEEECCHHHHHHHHHHT----TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHT
T ss_pred             cccCCCcceeccCHHHHHHHHHhc----CCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence            455554443333445566666555    2335679999999999999999998633578999999999999999999999


Q ss_pred             CCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCc
Q 017476          244 GLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGG  323 (371)
Q Consensus       244 gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG  323 (371)
                      ++.+ ++++.+|+.+.... .++||+|+++++...              -+                  +.+.+.|||||
T Consensus       124 g~~~-v~~~~~d~~~~~~~-~~~fD~Iv~~~~~~~--------------~~------------------~~~~~~LkpgG  169 (317)
T 1dl5_A          124 GIEN-VIFVCGDGYYGVPE-FSPYDVIFVTVGVDE--------------VP------------------ETWFTQLKEGG  169 (317)
T ss_dssp             TCCS-EEEEESCGGGCCGG-GCCEEEEEECSBBSC--------------CC------------------HHHHHHEEEEE
T ss_pred             CCCC-eEEEECChhhcccc-CCCeEEEEEcCCHHH--------------HH------------------HHHHHhcCCCc
Confidence            9876 99999999774432 368999999876421              00                  24457999999


Q ss_pred             EEEEEECC
Q 017476          324 FFAFETNG  331 (371)
Q Consensus       324 ~lvle~~~  331 (371)
                      ++++.++.
T Consensus       170 ~lvi~~~~  177 (317)
T 1dl5_A          170 RVIVPINL  177 (317)
T ss_dssp             EEEEEBCB
T ss_pred             EEEEEECC
Confidence            99998843

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.50  E-value=1.3e-13  Score=126.34  Aligned_cols=132  Identities=12%  Similarity=0.055  Sum_probs=99.9

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|.++..+++..  ..+|+|+|+|+.+++.|++++...+ ..+++++.+|+.+.. ...++||+|+++-
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~d~~~~~-~~~~~fD~v~~~~  154 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEG-KRVRNYFCCGLQDFT-PEPDSYDVIWIQW  154 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGG-GGEEEEEECCGGGCC-CCSSCEEEEEEES
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcC-CceEEEEEcChhhcC-CCCCCEEEEEEcc
Confidence            46799999999999999988863  5699999999999999999987664 245999999986532 2246899999952


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCc--------------CcHHHHHH
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGE--------------KQCKFLKN  340 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~--------------~q~~~v~~  340 (371)
                      .              ..|-+.          ..+..+++.+.+.|+|||++++.....              ...+.+.+
T Consensus       155 ~--------------l~~~~~----------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (241)
T 2ex4_A          155 V--------------IGHLTD----------QHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRR  210 (241)
T ss_dssp             C--------------GGGSCH----------HHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHH
T ss_pred             h--------------hhhCCH----------HHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHH
Confidence            1              112111          224578899999999999999954211              14778889


Q ss_pred             HHhccccCCceeEEEEe
Q 017476          341 YLENDSACSFCNVSIVS  357 (371)
Q Consensus       341 ~l~~~~~~gf~~v~~~~  357 (371)
                      ++++   .||..+++..
T Consensus       211 ~l~~---aGf~~~~~~~  224 (241)
T 2ex4_A          211 IICS---AGLSLLAEER  224 (241)
T ss_dssp             HHHH---TTCCEEEEEE
T ss_pred             HHHH---cCCeEEEeee
Confidence            9986   7898877654

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.50  E-value=3e-13  Score=124.64  Aligned_cols=129  Identities=17%  Similarity=0.145  Sum_probs=98.9

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      .++.+|||+|||+|.++..+++..  ..+|+|+|+|+.+++.|++++.    ..+++++++|+.+ ++...++||+|+++
T Consensus        43 ~~~~~vLD~GcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~-~~~~~~~fD~v~~~  115 (253)
T 3g5l_A           43 FNQKTVLDLGCGFGWHCIYAAEHG--AKKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAIED-IAIEPDAYNVVLSS  115 (253)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHCC----CTTEEEEECCGGG-CCCCTTCEEEEEEE
T ss_pred             cCCCEEEEECCCCCHHHHHHHHcC--CCEEEEEECCHHHHHHHHHhhc----cCCeEEEEcchhh-CCCCCCCeEEEEEc
Confidence            357799999999999999999862  2399999999999999998865    3469999999965 33335799999995


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCc---------------------
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGE---------------------  332 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~---------------------  332 (371)
                      -.+              .|-            .....+++.+.+.|+|||.+++.....                     
T Consensus       116 ~~l--------------~~~------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
T 3g5l_A          116 LAL--------------HYI------------ASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHW  169 (253)
T ss_dssp             SCG--------------GGC------------SCHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEE
T ss_pred             hhh--------------hhh------------hhHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEE
Confidence            321              111            113478899999999999999974211                     


Q ss_pred             ------------------------CcHHHHHHHHhccccCCceeEEEEec
Q 017476          333 ------------------------KQCKFLKNYLENDSACSFCNVSIVSD  358 (371)
Q Consensus       333 ------------------------~q~~~v~~~l~~~~~~gf~~v~~~~D  358 (371)
                                              ...+.+.+++++   .||..+++...
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~l~~---aGF~~~~~~e~  216 (253)
T 3g5l_A          170 PVDRYFNESMRTSHFLGEDVQKYHRTVTTYIQTLLK---NGFQINSVIEP  216 (253)
T ss_dssp             EECCTTCCCEEEEEETTEEEEEECCCHHHHHHHHHH---TTEEEEEEECC
T ss_pred             EeccccccceEEEeeccccCccEecCHHHHHHHHHH---cCCeeeeeecC
Confidence                                    055778888886   78988887743

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=99.50  E-value=1.9e-13  Score=140.70  Aligned_cols=156  Identities=20%  Similarity=0.242  Sum_probs=109.8

Q ss_pred             cccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCC-----------------CcEEEEEeCCHH
Q 017476          169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS-----------------KGSIIAVDLNPL  231 (371)
Q Consensus       169 vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~-----------------~~~V~gvDis~~  231 (371)
                      .+.|++.++.+++.+.        ...+.+|+|+|||||.+++.+++.+..                 ..+++|+|+++.
T Consensus       151 fyTP~~iv~~mv~~l~--------p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~  222 (541)
T 2ar0_A          151 YFTPRPLIKTIIHLLK--------PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPG  222 (541)
T ss_dssp             CCCCHHHHHHHHHHHC--------CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHH
T ss_pred             eeCCHHHHHHHHHHhc--------cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHH
Confidence            5668887777665431        224569999999999999999876421                 137999999999


Q ss_pred             HHHHHHHHHHHcCCCC----cEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHH
Q 017476          232 AAAVAAFNAQRYGLQD----IIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDY  307 (371)
Q Consensus       232 al~~A~~n~~~~gl~~----~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~  307 (371)
                      ++++|+.|+..+|+.+    ++.++++|.+.......++||+|++||||....... .   ...+..      . .+ ..
T Consensus       223 ~~~lA~~nl~l~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~-~---~~~~~~------~-~~-~~  290 (541)
T 2ar0_A          223 TRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTN-I---TRTFVH------P-TS-NK  290 (541)
T ss_dssp             HHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCC-C---CSCCSS------C-CS-CH
T ss_pred             HHHHHHHHHHHhCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchh-h---HhhcCC------C-CC-ch
Confidence            9999999999888764    278999998764322236899999999998654422 0   001110      0 11 11


Q ss_pred             HHHHHHHHhcccccCcEEEEEECCc-----CcHHHHHHHHhc
Q 017476          308 LLHLCNGTASMLKPGGFFAFETNGE-----KQCKFLKNYLEN  344 (371)
Q Consensus       308 ~~~il~~a~~~LkpgG~lvle~~~~-----~q~~~v~~~l~~  344 (371)
                      ...+++.+.++|+|||++++.++..     .....+++.|.+
T Consensus       291 ~~~Fl~~~l~~Lk~gGr~a~V~p~~~L~~~~~~~~iR~~L~~  332 (541)
T 2ar0_A          291 QLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMD  332 (541)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCEEEEEecCcceecCcHHHHHHHHHhh
Confidence            2267888889999999999988421     235667777764

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.49  E-value=2e-13  Score=122.36  Aligned_cols=113  Identities=16%  Similarity=0.222  Sum_probs=88.4

Q ss_pred             HHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcc
Q 017476          178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF  257 (371)
Q Consensus       178 ~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~  257 (371)
                      .++..+.+.+    ...++.+|||+|||+|.++..+++.   ..+|+|+|+|+.+++.|++|+..+++. +++++.+|+.
T Consensus        64 ~~~~~~~~~l----~~~~~~~vLdiG~G~G~~~~~la~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~  135 (210)
T 3lbf_A           64 YMVARMTELL----ELTPQSRVLEIGTGSGYQTAILAHL---VQHVCSVERIKGLQWQARRRLKNLDLH-NVSTRHGDGW  135 (210)
T ss_dssp             HHHHHHHHHT----TCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGG
T ss_pred             HHHHHHHHhc----CCCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCC-ceEEEECCcc
Confidence            3444445444    2345679999999999999999996   479999999999999999999999887 4999999998


Q ss_pred             cccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC
Q 017476          258 GKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG  331 (371)
Q Consensus       258 ~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~  331 (371)
                      +.... .++||+|++|....              +-|                  +.+.+.|+|||++++.++.
T Consensus       136 ~~~~~-~~~~D~i~~~~~~~--------------~~~------------------~~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          136 QGWQA-RAPFDAIIVTAAPP--------------EIP------------------TALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             GCCGG-GCCEEEEEESSBCS--------------SCC------------------THHHHTEEEEEEEEEEECS
T ss_pred             cCCcc-CCCccEEEEccchh--------------hhh------------------HHHHHhcccCcEEEEEEcC
Confidence            75543 47899999974321              101                  1345799999999999954

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.49  E-value=1.7e-13  Score=127.79  Aligned_cols=130  Identities=10%  Similarity=-0.016  Sum_probs=91.5

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH----------cC------CCCcEEEEEcCccc
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR----------YG------LQDIIEIRQGSWFG  258 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~----------~g------l~~~v~~~~gD~~~  258 (371)
                      ++.+|||+|||+|..+..||+.   +.+|+|||+|+.|++.|+++...          .+      ...+++++++|+++
T Consensus        68 ~~~~vLD~GCG~G~~~~~La~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~  144 (252)
T 2gb4_A           68 SGLRVFFPLCGKAIEMKWFADR---GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD  144 (252)
T ss_dssp             CSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred             CCCeEEEeCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence            4679999999999999999984   56999999999999999876431          00      12469999999977


Q ss_pred             ccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC-------
Q 017476          259 KLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG-------  331 (371)
Q Consensus       259 ~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~-------  331 (371)
                      ......++||+|+++--+.      .++.+                  ....+++.+.++|||||++++.+..       
T Consensus       145 l~~~~~~~FD~V~~~~~l~------~l~~~------------------~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~  200 (252)
T 2gb4_A          145 LPRANIGKFDRIWDRGALV------AINPG------------------DHDRYADIILSLLRKEFQYLVAVLSYDPTKHA  200 (252)
T ss_dssp             GGGGCCCCEEEEEESSSTT------TSCGG------------------GHHHHHHHHHHTEEEEEEEEEEEEECCTTSCC
T ss_pred             CCcccCCCEEEEEEhhhhh------hCCHH------------------HHHHHHHHHHHHcCCCeEEEEEEEecCCccCC
Confidence            4332127899999864332      11111                  1236788899999999999754311       


Q ss_pred             ----cCcHHHHHHHHhccccCCceeEEE
Q 017476          332 ----EKQCKFLKNYLENDSACSFCNVSI  355 (371)
Q Consensus       332 ----~~q~~~v~~~l~~~~~~gf~~v~~  355 (371)
                          .-..+++.+++..    +|..+.+
T Consensus       201 g~~~~~~~~el~~~l~~----~f~v~~~  224 (252)
T 2gb4_A          201 GPPFYVPSAELKRLFGT----KCSMQCL  224 (252)
T ss_dssp             CSSCCCCHHHHHHHHTT----TEEEEEE
T ss_pred             CCCCCCCHHHHHHHhhC----CeEEEEE
Confidence                1245778888873    4755433

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.49  E-value=3e-13  Score=129.24  Aligned_cols=109  Identities=12%  Similarity=0.118  Sum_probs=88.3

Q ss_pred             CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEE
Q 017476          192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV  271 (371)
Q Consensus       192 ~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIv  271 (371)
                      ...++.+|||+|||+|.++..+++.+  +.+|+|+|+|+.+++.|++++...++.++++++.+|+.+. +   ++||+|+
T Consensus        87 ~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~---~~fD~v~  160 (318)
T 2fk8_A           87 DLKPGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF-A---EPVDRIV  160 (318)
T ss_dssp             CCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC-C---CCCSEEE
T ss_pred             CCCCcCEEEEEcccchHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC-C---CCcCEEE
Confidence            33456799999999999999999975  4699999999999999999999989888899999998553 2   6899999


Q ss_pred             EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC
Q 017476          272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN  330 (371)
Q Consensus       272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~  330 (371)
                      ++-.+              .|-+          .+.+..+++.+.+.|+|||++++...
T Consensus       161 ~~~~l--------------~~~~----------~~~~~~~l~~~~~~LkpgG~l~~~~~  195 (318)
T 2fk8_A          161 SIEAF--------------EHFG----------HENYDDFFKRCFNIMPADGRMTVQSS  195 (318)
T ss_dssp             EESCG--------------GGTC----------GGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             EeChH--------------HhcC----------HHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            95322              1211          12345788999999999999998663

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.49  E-value=6.4e-13  Score=127.61  Aligned_cols=144  Identities=16%  Similarity=0.156  Sum_probs=99.4

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccC--CCceeEEEE
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV--EGKLSGVVS  272 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~--~~~fDlIvs  272 (371)
                      ++.+|||+|||+|..++.+|..+++.++|+|+|+++.+++.+++|++++|+.+ ++++++|+.+.....  .++||.|++
T Consensus       102 ~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~~fD~Vl~  180 (309)
T 2b9e_A          102 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC-CELAEEDFLAVSPSDPRYHEVHYILL  180 (309)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCGGGSCTTCGGGTTEEEEEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCChHhcCccccccCCCCEEEE
Confidence            56799999999999999999987566899999999999999999999999864 999999987643221  147999999


Q ss_pred             cCCCCCCCCcccchhhhcccCccccccCCCC--cH-HHHHHHHHHHhcccccCcEEEEEECC---cCcHHHHHHHHhcc
Q 017476          273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVD--GL-DYLLHLCNGTASMLKPGGFFAFETNG---EKQCKFLKNYLEND  345 (371)
Q Consensus       273 NPPYi~~~~~~~l~~ev~~~ep~~aL~gg~d--Gl-~~~~~il~~a~~~LkpgG~lvle~~~---~~q~~~v~~~l~~~  345 (371)
                      ||||...+.+..- ++.....   . ....+  ++ ...+.+++.+.++|+ ||++++.+..   ....+.|..++++.
T Consensus       181 D~PcSg~G~~~r~-pd~~~~~---~-~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~~Ene~~v~~~l~~~  253 (309)
T 2b9e_A          181 DPSCSGSGMPSRQ-LEEPGAG---T-PSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQEENEDVVRDALQQN  253 (309)
T ss_dssp             CCCCCC-----------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCGGGTHHHHHHHHTTS
T ss_pred             cCCcCCCCCCccC-CChhhhc---c-CCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCChHHhHHHHHHHHHhC
Confidence            9999765543210 1110000   0 00011  12 233578999999887 9999987632   23455667777753

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.49  E-value=8e-14  Score=125.30  Aligned_cols=131  Identities=11%  Similarity=-0.004  Sum_probs=90.4

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC-----------CCCcEEEEEcCcccccccC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG-----------LQDIIEIRQGSWFGKLKDV  263 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~g-----------l~~~v~~~~gD~~~~l~~~  263 (371)
                      ++.+|||+|||+|..+..+++.   +.+|+|||+|+.|++.|+++.....           ...+++++++|+.+.....
T Consensus        22 ~~~~vLD~GCG~G~~~~~la~~---g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~   98 (203)
T 1pjz_A           22 PGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD   98 (203)
T ss_dssp             TTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred             CCCEEEEeCCCCcHhHHHHHHC---CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCccc
Confidence            5679999999999999999986   4699999999999999998764210           0235999999997642210


Q ss_pred             CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCc-----------
Q 017476          264 EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGE-----------  332 (371)
Q Consensus       264 ~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~-----------  332 (371)
                      .++||+|+++--+.      .++                  .+....+++++.++|||||++++.+...           
T Consensus        99 ~~~fD~v~~~~~l~------~l~------------------~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~  154 (203)
T 1pjz_A           99 IGHCAAFYDRAAMI------ALP------------------ADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFS  154 (203)
T ss_dssp             HHSEEEEEEESCGG------GSC------------------HHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCC
T ss_pred             CCCEEEEEECcchh------hCC------------------HHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCC
Confidence            15899999853221      111                  1223468889999999999844443122           


Q ss_pred             CcHHHHHHHHhccccCCceeEEEE
Q 017476          333 KQCKFLKNYLENDSACSFCNVSIV  356 (371)
Q Consensus       333 ~q~~~v~~~l~~~~~~gf~~v~~~  356 (371)
                      ...+++.+++.    .||..+.+.
T Consensus       155 ~~~~el~~~~~----~gf~i~~~~  174 (203)
T 1pjz_A          155 VPQTWLHRVMS----GNWEVTKVG  174 (203)
T ss_dssp             CCHHHHHHTSC----SSEEEEEEE
T ss_pred             CCHHHHHHHhc----CCcEEEEec
Confidence            13466777765    378654443

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.49  E-value=6.1e-13  Score=130.11  Aligned_cols=147  Identities=10%  Similarity=0.021  Sum_probs=111.3

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ...+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.|++++...++.++++++.+|+++......+.||+|+++-
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~  256 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQYN-KEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQ  256 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHHHS-TTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEES
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEec
Confidence            45799999999999999999986 8889999999 999999999999888878899999999874201126899999842


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC-----------------------
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG-----------------------  331 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~-----------------------  331 (371)
                      -.      +.+.                  -+....+++++.+.|+|||++++....                       
T Consensus       257 vl------h~~~------------------~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~  312 (363)
T 3dp7_A          257 FL------DCFS------------------EEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAM  312 (363)
T ss_dssp             CS------TTSC------------------HHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHS
T ss_pred             hh------hhCC------------------HHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhh
Confidence            11      1111                  133457899999999999999774310                       


Q ss_pred             ------cCcHHHHHHHHhccccCCceeEEEEecCCCCceEEEEEe
Q 017476          332 ------EKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFR  370 (371)
Q Consensus       332 ------~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~~  370 (371)
                            ....+++.+++++   .||..+++.+.......++..++
T Consensus       313 ~~~~~~~~t~~e~~~ll~~---AGf~~v~~~~~~g~~~svi~~~~  354 (363)
T 3dp7_A          313 ANGNSKMFHSDDLIRCIEN---AGLEVEEIQDNIGLGHSILQCRL  354 (363)
T ss_dssp             SCSSCCSCCHHHHHHHHHT---TTEEESCCCCCBTTTBEEEEEEE
T ss_pred             hCCCCcccCHHHHHHHHHH---cCCeEEEEEeCCCCCceEEEEee
Confidence                  1135567777775   78999998877766666665554

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.49  E-value=3e-13  Score=127.36  Aligned_cols=129  Identities=19%  Similarity=0.195  Sum_probs=91.9

Q ss_pred             hHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC---CcEEE
Q 017476          175 ETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ---DIIEI  251 (371)
Q Consensus       175 ~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~---~~v~~  251 (371)
                      .++.+.+.+.+.+ ..   .++.+|||+|||+|.++..+++.   +.+|+|+|+|+.+++.|++|+...+..   .++.+
T Consensus        41 ~~~~~~~~l~~~l-~~---~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~  113 (293)
T 3thr_A           41 RTAEYKAWLLGLL-RQ---HGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVI  113 (293)
T ss_dssp             BCHHHHHHHHHHH-HH---TTCCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEE
T ss_pred             hHHHHHHHHHHHh-cc---cCCCEEEEecCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHhhhhcccccccceeeE
Confidence            3455666666655 21   24579999999999999999985   459999999999999999998654432   24889


Q ss_pred             EEcCcccccc--cCCCceeEEEEc-CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476          252 RQGSWFGKLK--DVEGKLSGVVSN-PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE  328 (371)
Q Consensus       252 ~~gD~~~~l~--~~~~~fDlIvsN-PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle  328 (371)
                      ..+|+.+...  ...++||+|+++ .-+              .|-+..     ....+....+++.+.++|||||++++.
T Consensus       114 ~~~d~~~~~~~~~~~~~fD~V~~~g~~l--------------~~~~~~-----~~~~~~~~~~l~~~~~~LkpgG~l~~~  174 (293)
T 3thr_A          114 EEANWLTLDKDVPAGDGFDAVICLGNSF--------------AHLPDS-----KGDQSEHRLALKNIASMVRPGGLLVID  174 (293)
T ss_dssp             EECCGGGHHHHSCCTTCEEEEEECTTCG--------------GGSCCS-----SSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             eecChhhCccccccCCCeEEEEEcChHH--------------hhcCcc-----ccCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            9999866320  224789999995 221              111110     001244568999999999999999987


Q ss_pred             E
Q 017476          329 T  329 (371)
Q Consensus       329 ~  329 (371)
                      +
T Consensus       175 ~  175 (293)
T 3thr_A          175 H  175 (293)
T ss_dssp             E
T ss_pred             e
Confidence            6

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=99.49  E-value=1.5e-13  Score=144.89  Aligned_cols=172  Identities=13%  Similarity=0.087  Sum_probs=112.4

Q ss_pred             cccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhC--CCcEEEEEeCCHHHHHHH--HHHHHHc-
Q 017476          169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG--SKGSIIAVDLNPLAAAVA--AFNAQRY-  243 (371)
Q Consensus       169 vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~--~~~~V~gvDis~~al~~A--~~n~~~~-  243 (371)
                      .+.|++....+++.+...+ .. ....+.+|+|+|||||.+++.+++.++  ...+++|+|+++.+++.|  +.|+..+ 
T Consensus       297 FYTP~eLA~lMVeLA~ill-~~-~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~  374 (878)
T 3s1s_A          297 VPTDIELGKVLSIISQHIL-GR-PLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQ  374 (878)
T ss_dssp             SSCCHHHHHHHHHHHHHHH-CS-CCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTT
T ss_pred             EcCCHHHHHHHHHHHhhhc-cc-cCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhh
Confidence            4568777777777643333 11 122467999999999999999998752  135799999999999999  7777653 


Q ss_pred             ---CCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhh----hcccCccccccCCCCcHHHHHHHHHHHh
Q 017476          244 ---GLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVE----VGKHEPRLALDGGVDGLDYLLHLCNGTA  316 (371)
Q Consensus       244 ---gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~e----v~~~ep~~aL~gg~dGl~~~~~il~~a~  316 (371)
                         +... ..+...|+.+......++||+||+||||+..........+    .....|... ..+..+.+.+..+++.+.
T Consensus       375 LlhGi~~-~~I~~dD~L~~~~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p-~s~~G~~DLy~aFIe~Al  452 (878)
T 3s1s_A          375 LVSSNNA-PTITGEDVCSLNPEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRP-QTLFGQIGVEALFLELVT  452 (878)
T ss_dssp             TCBTTBC-CEEECCCGGGCCGGGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCC-SSCSSSCCHHHHHHHHHH
T ss_pred             hhcCCCc-ceEEecchhcccccccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccc-cccccccchHHHHHHHHH
Confidence               3322 3566677765322224689999999999754332211111    001111111 112334567778999999


Q ss_pred             cccccCcEEEEEECCcC------cHHHHHHHHhc
Q 017476          317 SMLKPGGFFAFETNGEK------QCKFLKNYLEN  344 (371)
Q Consensus       317 ~~LkpgG~lvle~~~~~------q~~~v~~~l~~  344 (371)
                      ++|++||++++.++..-      ....+++.|.+
T Consensus       453 ~lLKpGGrLAfIlP~s~Lf~sg~~~kkLRk~LLe  486 (878)
T 3s1s_A          453 ELVQDGTVISAIMPKQYLTAQGNESKAFREFLVG  486 (878)
T ss_dssp             HHSCTTCEEEEEEETHHHHCCSHHHHHHHHHHTT
T ss_pred             HhcCCCcEEEEEEChHHhccCChHHHHHHHHHHh
Confidence            99999999999885321      25678888764

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.48  E-value=1.9e-13  Score=131.48  Aligned_cols=147  Identities=15%  Similarity=0.109  Sum_probs=104.5

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccC-CCceeEEEEcC
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV-EGKLSGVVSNP  274 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~-~~~fDlIvsNP  274 (371)
                      +.+|||||||+|.++..+++.+ ++.+|++||+++.+++.|++++.... ..+++++.+|..+.+... .++||+|++|.
T Consensus        90 ~~rVLdIG~G~G~la~~la~~~-p~~~v~~VEidp~vi~~Ar~~~~~~~-~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~  167 (317)
T 3gjy_A           90 KLRITHLGGGACTMARYFADVY-PQSRNTVVELDAELARLSREWFDIPR-APRVKIRVDDARMVAESFTPASRDVIIRDV  167 (317)
T ss_dssp             GCEEEEESCGGGHHHHHHHHHS-TTCEEEEEESCHHHHHHHHHHSCCCC-TTTEEEEESCHHHHHHTCCTTCEEEEEECC
T ss_pred             CCEEEEEECCcCHHHHHHHHHC-CCcEEEEEECCHHHHHHHHHhccccC-CCceEEEECcHHHHHhhccCCCCCEEEECC
Confidence            3499999999999999999975 78899999999999999999875432 357999999998765432 46899999985


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCc---HHHHHHHHhccccCCce
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQ---CKFLKNYLENDSACSFC  351 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q---~~~v~~~l~~~~~~gf~  351 (371)
                      +.....             | ..|.        ...+++.+.+.|+|||++++.......   ...+.+.+++    -|.
T Consensus       168 ~~~~~~-------------~-~~L~--------t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~----vF~  221 (317)
T 3gjy_A          168 FAGAIT-------------P-QNFT--------TVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMME----VFE  221 (317)
T ss_dssp             STTSCC-------------C-GGGS--------BHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHH----HCS
T ss_pred             CCcccc-------------c-hhhh--------HHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHH----HCC
Confidence            432110             0 0000        136888889999999999998853222   2344455553    388


Q ss_pred             eEEEEecC---CC---CceEEEEEe
Q 017476          352 NVSIVSDF---AG---IQRFVTGFR  370 (371)
Q Consensus       352 ~v~~~~Dl---~g---~~R~~~a~~  370 (371)
                      .+.++.+.   .|   ...+++|.+
T Consensus       222 ~v~~~~~~~~~~g~~~gN~Vl~As~  246 (317)
T 3gjy_A          222 HVAVIADPPMLKGRRYGNIILMGSD  246 (317)
T ss_dssp             EEEEEECHHHHTTSSCEEEEEEEES
T ss_pred             ceEEEEecCCCCCCcCceEEEEEEC
Confidence            88888752   22   245566654

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.48  E-value=9.8e-14  Score=136.66  Aligned_cols=125  Identities=22%  Similarity=0.213  Sum_probs=96.0

Q ss_pred             cccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 017476          171 IPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIE  250 (371)
Q Consensus       171 iPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~  250 (371)
                      ..+..++.+.+.+....    ...++.+|||+|||+|.+++.+++.  ...+|+|+|+| .+++.|+++++.+++.++++
T Consensus        43 ~d~~r~~~~~~~i~~~~----~~~~~~~VLDlGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~  115 (376)
T 3r0q_C           43 SDRVRMDAYFNAVFQNK----HHFEGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMADHARALVKANNLDHIVE  115 (376)
T ss_dssp             TCHHHHHHHHHHHHTTT----TTTTTCEEEEESCTTTHHHHHHHHT--TCSEEEEEESS-TTHHHHHHHHHHTTCTTTEE
T ss_pred             cChHHHHHHHHHHHhcc----ccCCCCEEEEeccCcCHHHHHHHhc--CCCEEEEEccH-HHHHHHHHHHHHcCCCCeEE
Confidence            34445666666665443    3345789999999999999999985  34599999999 99999999999999998999


Q ss_pred             EEEcCcccccccCCCceeEEEEcC-CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476          251 IRQGSWFGKLKDVEGKLSGVVSNP-PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE  328 (371)
Q Consensus       251 ~~~gD~~~~l~~~~~~fDlIvsNP-PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle  328 (371)
                      ++++|+.+...  .++||+|++|+ +|...            ++            .....++..+.++|+|||++++.
T Consensus       116 ~~~~d~~~~~~--~~~~D~Iv~~~~~~~l~------------~e------------~~~~~~l~~~~~~LkpgG~li~~  168 (376)
T 3r0q_C          116 VIEGSVEDISL--PEKVDVIISEWMGYFLL------------RE------------SMFDSVISARDRWLKPTGVMYPS  168 (376)
T ss_dssp             EEESCGGGCCC--SSCEEEEEECCCBTTBT------------TT------------CTHHHHHHHHHHHEEEEEEEESS
T ss_pred             EEECchhhcCc--CCcceEEEEcChhhccc------------ch------------HHHHHHHHHHHhhCCCCeEEEEe
Confidence            99999976432  27899999987 34321            11            11336788888999999999774

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.48  E-value=5.9e-13  Score=129.04  Aligned_cols=144  Identities=16%  Similarity=0.122  Sum_probs=111.1

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCC
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP  275 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPP  275 (371)
                      +.+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.|++++...++.++++++.+|+++......+.||+|+++--
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~v  257 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRH-PQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDC  257 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESC
T ss_pred             CCEEEEeCCCcCHHHHHHHHhC-CCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEecc
Confidence            6799999999999999999986 8899999999 8899999999999998889999999998754212357999999421


Q ss_pred             CCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC-------------------------
Q 017476          276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN-------------------------  330 (371)
Q Consensus       276 Yi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~-------------------------  330 (371)
                      .              .|-+          -+....+++.+.+.|+|||++++...                         
T Consensus       258 l--------------h~~~----------~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (352)
T 3mcz_A          258 L--------------HYFD----------AREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNH  313 (352)
T ss_dssp             G--------------GGSC----------HHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTT
T ss_pred             c--------------ccCC----------HHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCC
Confidence            1              1111          12345899999999999999987431                         


Q ss_pred             -CcCcHHHHHHHHhccccCCceeEEEEecCCCCceEEEEEeC
Q 017476          331 -GEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFRQ  371 (371)
Q Consensus       331 -~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~~~  371 (371)
                       .....+++.+++++   .||..++..   .|...+++|+|+
T Consensus       314 ~~~~t~~e~~~ll~~---aGf~~~~~~---~g~~~l~~a~kp  349 (352)
T 3mcz_A          314 GELHPTPWIAGVVRD---AGLAVGERS---IGRYTLLIGQRS  349 (352)
T ss_dssp             CCCCCHHHHHHHHHH---TTCEEEEEE---ETTEEEEEEECC
T ss_pred             CCcCCHHHHHHHHHH---CCCceeeec---cCceEEEEEecC
Confidence             01234567777775   789888743   467888888874

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.48  E-value=1.5e-12  Score=117.87  Aligned_cols=141  Identities=16%  Similarity=0.053  Sum_probs=95.5

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc--ccCCCceeEEE
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL--KDVEGKLSGVV  271 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l--~~~~~~fDlIv  271 (371)
                      .++.+|||+|||+|.++..+++.. +.++|+|+|+|+.+++.+.++++..   +++.++.+|..+..  ....++||+|+
T Consensus        56 ~~g~~VLDlGcGtG~~~~~la~~~-~~~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~~~fD~V~  131 (210)
T 1nt2_A           56 RGDERVLYLGAASGTTVSHLADIV-DEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYSGIVEKVDLIY  131 (210)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHT-TTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTTTTCCCEEEEE
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHhcC---CCeEEEEcCCCCchhhcccccceeEEE
Confidence            356799999999999999999986 4679999999999988777776654   24899999986641  11237899999


Q ss_pred             EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC-----CcCcHHHHH-HH---H
Q 017476          272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN-----GEKQCKFLK-NY---L  342 (371)
Q Consensus       272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~-----~~~q~~~v~-~~---l  342 (371)
                      +|.+.          +                  +....+++++.+.|||||.+++.+.     .....+++. +.   +
T Consensus       132 ~~~~~----------~------------------~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l  183 (210)
T 1nt2_A          132 QDIAQ----------K------------------NQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEM  183 (210)
T ss_dssp             ECCCS----------T------------------THHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHH
T ss_pred             EeccC----------h------------------hHHHHHHHHHHHHhCCCCEEEEEEecCCccccCCHHHHHHHHHHHH
Confidence            97311          0                  0122457889999999999999852     111223332 22   4


Q ss_pred             hccccCCceeEEEEec-CCCCce-EEEEEe
Q 017476          343 ENDSACSFCNVSIVSD-FAGIQR-FVTGFR  370 (371)
Q Consensus       343 ~~~~~~gf~~v~~~~D-l~g~~R-~~~a~~  370 (371)
                      ++   . |..++.... ..+.+- +++++|
T Consensus       184 ~~---~-f~~~~~~~~~p~~~~h~~~~~~~  209 (210)
T 1nt2_A          184 EG---D-FKIVKHGSLMPYHRDHIFIHAYR  209 (210)
T ss_dssp             HT---T-SEEEEEEECTTTCTTEEEEEEEE
T ss_pred             Hh---h-cEEeeeecCCCCCCCcEEEEEEc
Confidence            53   6 877766543 223333 455554

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.48  E-value=1.5e-12  Score=118.37  Aligned_cols=102  Identities=20%  Similarity=0.133  Sum_probs=78.6

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|.++..+++..   .+|+|+|+|+.+++.|+++.      .+++++++|+.+.. . .++||+|+|.-
T Consensus        40 ~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~-~-~~~~D~v~~~~  108 (239)
T 3bxo_A           40 EASSLLDVACGTGTHLEHFTKEF---GDTAGLELSEDMLTHARKRL------PDATLHQGDMRDFR-L-GRKFSAVVSMF  108 (239)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHH---SEEEEEESCHHHHHHHHHHC------TTCEEEECCTTTCC-C-SSCEEEEEECT
T ss_pred             CCCeEEEecccCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhC------CCCEEEECCHHHcc-c-CCCCcEEEEcC
Confidence            45799999999999999999975   38999999999999999874      24899999997642 2 47899999621


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                                   .+..|-+         ..+....+++.+.+.|+|||.+++..
T Consensus       109 -------------~~~~~~~---------~~~~~~~~l~~~~~~L~pgG~l~~~~  141 (239)
T 3bxo_A          109 -------------SSVGYLK---------TTEELGAAVASFAEHLEPGGVVVVEP  141 (239)
T ss_dssp             -------------TGGGGCC---------SHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             -------------chHhhcC---------CHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence                         0111111         02345688999999999999999963

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.48  E-value=3.9e-13  Score=127.34  Aligned_cols=152  Identities=13%  Similarity=0.133  Sum_probs=104.5

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEEcCcccccccCCCceeEEE
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG--L-QDIIEIRQGSWFGKLKDVEGKLSGVV  271 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~g--l-~~~v~~~~gD~~~~l~~~~~~fDlIv  271 (371)
                      ++.+|||+|||+|.++..+++. .+..+|++||+++.+++.|++++...+  + .++++++.+|..+.+....++||+|+
T Consensus        78 ~~~~VLdiG~G~G~~~~~l~~~-~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (283)
T 2i7c_A           78 EPKNVLVVGGGDGGIIRELCKY-KSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  156 (283)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCeEEEEeCCcCHHHHHHHHc-CCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence            4679999999999999999985 367899999999999999999876432  2 35799999999775543357899999


Q ss_pred             EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC-cCcHHHHHHHHhccccCCc
Q 017476          272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG-EKQCKFLKNYLENDSACSF  350 (371)
Q Consensus       272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~-~~q~~~v~~~l~~~~~~gf  350 (371)
                      +|++....              |...+.        -..+++.+.+.|+|||++++.... ..+.+.+..+.+.. ...|
T Consensus       157 ~d~~~~~~--------------~~~~l~--------~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l-~~~F  213 (283)
T 2i7c_A          157 VDSSDPIG--------------PAETLF--------NQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYA-KKLF  213 (283)
T ss_dssp             EECCCTTT--------------GGGGGS--------SHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHH-HTTC
T ss_pred             EcCCCCCC--------------cchhhh--------HHHHHHHHHHhcCCCcEEEEECCCcccCHHHHHHHHHHH-HHHC
Confidence            98754211              000000        137888899999999999998742 23444444433332 1347


Q ss_pred             eeEEEEec----C-CCCceEEEEEe
Q 017476          351 CNVSIVSD----F-AGIQRFVTGFR  370 (371)
Q Consensus       351 ~~v~~~~D----l-~g~~R~~~a~~  370 (371)
                      ..++.+.-    + .|..-|+++.+
T Consensus       214 ~~v~~~~~~vP~y~~g~~g~~~~s~  238 (283)
T 2i7c_A          214 KKVEYANISIPTYPCGCIGILCCSK  238 (283)
T ss_dssp             SEEEEEEEECTTSGGGEEEEEEEES
T ss_pred             CceEEEEEEcCCcCCCcEEEEEEeC
Confidence            77665432    2 34545666643

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.48  E-value=3.1e-12  Score=123.15  Aligned_cols=142  Identities=19%  Similarity=0.112  Sum_probs=109.2

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ...+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.|++++...++.++++++.+|++++.+   ..||+|+++-
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p---~~~D~v~~~~  243 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAH-EDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDPLP---AGAGGYVLSA  243 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC---CSCSEEEEES
T ss_pred             CCCEEEEeCCChhHHHHHHHHHC-CCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCCCC---CCCcEEEEeh
Confidence            45799999999999999999986 8889999999 99999999999999988889999999986544   2799999842


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC---------------------cC
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG---------------------EK  333 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~---------------------~~  333 (371)
                                    +..|-+          -+....+++++.+.|+|||++++....                     ..
T Consensus       244 --------------vlh~~~----------~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~  299 (332)
T 3i53_A          244 --------------VLHDWD----------DLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKER  299 (332)
T ss_dssp             --------------CGGGSC----------HHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCC
T ss_pred             --------------hhccCC----------HHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCC
Confidence                          111111          123458999999999999999885421                     12


Q ss_pred             cHHHHHHHHhccccCCceeEEEEecCCCCceEEEEEe
Q 017476          334 QCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFR  370 (371)
Q Consensus       334 q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~~  370 (371)
                      ..+++.+++++   .||..+++... .+ .-++.+++
T Consensus       300 t~~e~~~ll~~---aGf~~~~~~~~-~~-~~vie~r~  331 (332)
T 3i53_A          300 SLAELGELAAQ---AGLAVRAAHPI-SY-VSIVEMTA  331 (332)
T ss_dssp             CHHHHHHHHHH---TTEEEEEEEEC-SS-SEEEEEEE
T ss_pred             CHHHHHHHHHH---CCCEEEEEEEC-CC-cEEEEEee
Confidence            35667788875   78999988864 34 44444443

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.48  E-value=4.3e-13  Score=119.17  Aligned_cols=144  Identities=17%  Similarity=0.138  Sum_probs=95.2

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc------------
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGS-KGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK------------  261 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~-~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~------------  261 (371)
                      ++.+|||+|||+|.++..+++.+++ +.+|+|+|+|+.+           .. .+++++++|+.+...            
T Consensus        22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~-~~v~~~~~d~~~~~~~~~~~~~~i~~~   89 (201)
T 2plw_A           22 KNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PI-PNVYFIQGEIGKDNMNNIKNINYIDNM   89 (201)
T ss_dssp             TTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CC-TTCEEEECCTTTTSSCCC---------
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CC-CCceEEEccccchhhhhhccccccccc
Confidence            4569999999999999999998622 6899999999932           12 348999999876420            


Q ss_pred             ------------cCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          262 ------------DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       262 ------------~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                                  ...++||+|++|++...... ...     .+.         ...+....+++.+.+.|+|||.+++.+
T Consensus        90 ~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~-~~~-----d~~---------~~~~~~~~~l~~~~~~LkpgG~lv~~~  154 (201)
T 2plw_A           90 NNNSVDYKLKEILQDKKIDIILSDAAVPCIGN-KID-----DHL---------NSCELTLSITHFMEQYINIGGTYIVKM  154 (201)
T ss_dssp             --CHHHHHHHHHHTTCCEEEEEECCCCCCCSC-HHH-----HHH---------HHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cchhhHHHHHhhcCCCcccEEEeCCCcCCCCC-ccc-----CHH---------HHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence                        11246788887754321110 000     000         001223358889999999999999987


Q ss_pred             CCcCcHHHHHHHHhccccCCceeEEEEecCCCC----ceEEEEE
Q 017476          330 NGEKQCKFLKNYLENDSACSFCNVSIVSDFAGI----QRFVTGF  369 (371)
Q Consensus       330 ~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~----~R~~~a~  369 (371)
                      ........+...++    ..|..++++++..++    ++++++.
T Consensus       155 ~~~~~~~~l~~~l~----~~f~~v~~~~~~~~r~~s~e~y~v~~  194 (201)
T 2plw_A          155 YLGSQTNNLKTYLK----GMFQLVHTTKPKASRNESREIYLVCK  194 (201)
T ss_dssp             ECSTTHHHHHHHHH----TTEEEEEECCCC-----CCEEEEEEE
T ss_pred             eCCCCHHHHHHHHH----HHHheEEEECCcccCCcCceEEEEEe
Confidence            55555667777776    359999999888765    4455543

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.48  E-value=1e-12  Score=118.02  Aligned_cols=119  Identities=15%  Similarity=0.165  Sum_probs=91.1

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|.++..+++.   ..+|+|+|+|+.+++.|++++...+   +++++++|+.+..  ..++||+|++|.
T Consensus        51 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~--~~~~fD~v~~~~  122 (216)
T 3ofk_A           51 AVSNGLEIGCAAGAFTEKLAPH---CKRLTVIDVMPRAIGRACQRTKRWS---HISWAATDILQFS--TAELFDLIVVAE  122 (216)
T ss_dssp             SEEEEEEECCTTSHHHHHHGGG---EEEEEEEESCHHHHHHHHHHTTTCS---SEEEEECCTTTCC--CSCCEEEEEEES
T ss_pred             CCCcEEEEcCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHhcccCC---CeEEEEcchhhCC--CCCCccEEEEcc
Confidence            4679999999999999999886   3699999999999999999986543   5999999997754  357899999964


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC---------CcCcHHHHHHHHhc
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN---------GEKQCKFLKNYLEN  344 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~---------~~~q~~~v~~~l~~  344 (371)
                      .+              .|-+.         .+.+..+++.+.+.|+|||++++.+.         .....+.+..++.+
T Consensus       123 ~l--------------~~~~~---------~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (216)
T 3ofk_A          123 VL--------------YYLED---------MTQMRTAIDNMVKMLAPGGHLVFGSARDATCRRWGHVAGAETVITILTE  178 (216)
T ss_dssp             CG--------------GGSSS---------HHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHTTCSCCHHHHHHHHHH
T ss_pred             HH--------------HhCCC---------HHHHHHHHHHHHHHcCCCCEEEEEecCCCcchhhhhhhhHHHHHHHHHh
Confidence            32              12111         23445789999999999999999652         22345566666653

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.48  E-value=5.7e-13  Score=122.41  Aligned_cols=131  Identities=12%  Similarity=0.029  Sum_probs=100.1

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      .++.+|||+|||+|.++..+++..  ..+|+|+|+|+.+++.|++++...   .+++++++|+.+. +...++||+|+++
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~-~~~~~~fD~v~~~  165 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETA-TLPPNTYDLIVIQ  165 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGC-CCCSSCEEEEEEE
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHHC-CCCCCCeEEEEEc
Confidence            356799999999999999999874  468999999999999999987544   4699999998663 3334789999995


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC---------------cCcHHHH
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG---------------EKQCKFL  338 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~---------------~~q~~~v  338 (371)
                      -.              ..|-+          -+....+++.+.+.|+|||++++..+.               ....+.+
T Consensus       166 ~~--------------l~~~~----------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (254)
T 1xtp_A          166 WT--------------AIYLT----------DADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHY  221 (254)
T ss_dssp             SC--------------GGGSC----------HHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHH
T ss_pred             ch--------------hhhCC----------HHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHH
Confidence            32              12211          133558899999999999999997631               1234778


Q ss_pred             HHHHhccccCCceeEEEEe
Q 017476          339 KNYLENDSACSFCNVSIVS  357 (371)
Q Consensus       339 ~~~l~~~~~~gf~~v~~~~  357 (371)
                      .+++++   .||..+++..
T Consensus       222 ~~~l~~---aGf~~~~~~~  237 (254)
T 1xtp_A          222 KRLFNE---SGVRVVKEAF  237 (254)
T ss_dssp             HHHHHH---HTCCEEEEEE
T ss_pred             HHHHHH---CCCEEEEeee
Confidence            888886   6898877754

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.47  E-value=3.4e-13  Score=120.89  Aligned_cols=124  Identities=21%  Similarity=0.188  Sum_probs=97.0

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|.++..+++.   +.+|+|+|+|+.+++.|++++       ++.++.+|+.+..  ..++||+|+++.
T Consensus        43 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~d~~~~~--~~~~fD~v~~~~  110 (211)
T 3e23_A           43 AGAKILELGCGAGYQAEAMLAA---GFDVDATDGSPELAAEASRRL-------GRPVRTMLFHQLD--AIDAYDAVWAHA  110 (211)
T ss_dssp             TTCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHH-------TSCCEECCGGGCC--CCSCEEEEEECS
T ss_pred             CCCcEEEECCCCCHHHHHHHHc---CCeEEEECCCHHHHHHHHHhc-------CCceEEeeeccCC--CCCcEEEEEecC
Confidence            4679999999999999999985   569999999999999999987       2678889986543  457999999964


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCc--------------CcHHHHHH
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGE--------------KQCKFLKN  340 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~--------------~q~~~v~~  340 (371)
                      .+              .|-+          -+....+++.+.+.|+|||++++.....              ...+.+.+
T Consensus       111 ~l--------------~~~~----------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (211)
T 3e23_A          111 CL--------------LHVP----------RDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRA  166 (211)
T ss_dssp             CG--------------GGSC----------HHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHH
T ss_pred             ch--------------hhcC----------HHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHH
Confidence            32              1211          1345578999999999999999986422              25678899


Q ss_pred             HHhccccCC-ceeEEEEe
Q 017476          341 YLENDSACS-FCNVSIVS  357 (371)
Q Consensus       341 ~l~~~~~~g-f~~v~~~~  357 (371)
                      ++++   .| |..+++..
T Consensus       167 ~l~~---aG~f~~~~~~~  181 (211)
T 3e23_A          167 RYAE---AGTWASVAVES  181 (211)
T ss_dssp             HHHH---HCCCSEEEEEE
T ss_pred             HHHh---CCCcEEEEEEe
Confidence            9986   78 98777653

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.47  E-value=4.9e-13  Score=120.19  Aligned_cols=115  Identities=18%  Similarity=0.234  Sum_probs=89.8

Q ss_pred             HHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccc
Q 017476          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG  258 (371)
Q Consensus       179 lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~  258 (371)
                      ++..+.+.+    ...++.+|||+|||+|.++..+++..++..+|+++|+|+.+++.|++|+...++.+ ++++.+|+..
T Consensus        65 ~~~~~~~~~----~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~  139 (215)
T 2yxe_A           65 MVGMMCELL----DLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDN-VIVIVGDGTL  139 (215)
T ss_dssp             HHHHHHHHT----TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTT-EEEEESCGGG
T ss_pred             HHHHHHHhh----CCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEECCccc
Confidence            344444444    23356799999999999999999986455799999999999999999999988865 9999999866


Q ss_pred             ccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC
Q 017476          259 KLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG  331 (371)
Q Consensus       259 ~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~  331 (371)
                      .+.. .++||+|+++.++.              +                  +.+.+.+.|+|||++++.++.
T Consensus       140 ~~~~-~~~fD~v~~~~~~~--------------~------------------~~~~~~~~L~pgG~lv~~~~~  179 (215)
T 2yxe_A          140 GYEP-LAPYDRIYTTAAGP--------------K------------------IPEPLIRQLKDGGKLLMPVGR  179 (215)
T ss_dssp             CCGG-GCCEEEEEESSBBS--------------S------------------CCHHHHHTEEEEEEEEEEESS
T ss_pred             CCCC-CCCeeEEEECCchH--------------H------------------HHHHHHHHcCCCcEEEEEECC
Confidence            5442 36899999976542              1                  113556899999999999953

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.46  E-value=3.4e-13  Score=131.04  Aligned_cols=119  Identities=20%  Similarity=0.193  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcC
Q 017476          176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGS  255 (371)
Q Consensus       176 te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD  255 (371)
                      +..+.+.+.+.+    ...++.+|||+|||+|.++..+++.  +..+|+|+|+|+ +++.|++|++.+++.++++++++|
T Consensus        49 ~~~~~~~i~~~~----~~~~~~~VLDiGcGtG~ls~~la~~--g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d  121 (340)
T 2fyt_A           49 TESYRDFIYQNP----HIFKDKVVLDVGCGTGILSMFAAKA--GAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGK  121 (340)
T ss_dssp             HHHHHHHHHHCG----GGTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESC
T ss_pred             HHHHHHHHHhhh----hhcCCCEEEEeeccCcHHHHHHHHc--CCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEee
Confidence            334445444433    2235679999999999999999985  446999999997 999999999999997789999999


Q ss_pred             cccccccCCCceeEEEEcC-CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEE
Q 017476          256 WFGKLKDVEGKLSGVVSNP-PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFA  326 (371)
Q Consensus       256 ~~~~l~~~~~~fDlIvsNP-PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lv  326 (371)
                      +.+. ....++||+|++|+ +|..            .++            ..+..++..+.++|||||.++
T Consensus       122 ~~~~-~~~~~~~D~Ivs~~~~~~l------------~~~------------~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          122 IEEV-HLPVEKVDVIISEWMGYFL------------LFE------------SMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             TTTS-CCSCSCEEEEEECCCBTTB------------TTT------------CHHHHHHHHHHHHEEEEEEEE
T ss_pred             HHHh-cCCCCcEEEEEEcCchhhc------------cCH------------HHHHHHHHHHHhhcCCCcEEE
Confidence            9763 22236899999987 5531            111            123468888899999999997

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.46  E-value=2.2e-12  Score=125.34  Aligned_cols=144  Identities=16%  Similarity=0.186  Sum_probs=108.4

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      .++.+|||+|||+|.++..+++.. ++.+++++|+ +.+++.|++|+...++.++++++.+|+++.++   ..||+|+++
T Consensus       182 ~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~D~v~~~  256 (360)
T 1tw3_A          182 TNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLP---RKADAIILS  256 (360)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCS---SCEEEEEEE
T ss_pred             ccCcEEEEeCCcCcHHHHHHHHhC-CCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCCC---CCccEEEEc
Confidence            356799999999999999999985 7889999999 99999999999999988789999999987554   359999985


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC-c--------------------
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG-E--------------------  332 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~-~--------------------  332 (371)
                      ..+.              +-+          -.....+++.+.+.|+|||++++.... .                    
T Consensus       257 ~vl~--------------~~~----------~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~  312 (360)
T 1tw3_A          257 FVLL--------------NWP----------DHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFL  312 (360)
T ss_dssp             SCGG--------------GSC----------HHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHH
T ss_pred             cccc--------------CCC----------HHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhc
Confidence            3321              100          122347889999999999988875322 0                    


Q ss_pred             ----CcHHHHHHHHhccccCCceeEEEEecCCCC-----ceEEEEEe
Q 017476          333 ----KQCKFLKNYLENDSACSFCNVSIVSDFAGI-----QRFVTGFR  370 (371)
Q Consensus       333 ----~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~-----~R~~~a~~  370 (371)
                          ...+++.+++++   .||..+++..-. +.     ..++.++|
T Consensus       313 ~~~~~t~~e~~~ll~~---aGf~~~~~~~~~-~~~~~~~~~~i~~~~  355 (360)
T 1tw3_A          313 GGALRTREKWDGLAAS---AGLVVEEVRQLP-SPTIPYDLSLLVLAP  355 (360)
T ss_dssp             SCCCCBHHHHHHHHHH---TTEEEEEEEEEE-CSSSSCEEEEEEEEE
T ss_pred             CCcCCCHHHHHHHHHH---CCCeEEEEEeCC-CCcccCccEEEEEEe
Confidence                124556677775   789888776643 32     45666665

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.46  E-value=3.3e-13  Score=129.79  Aligned_cols=152  Identities=16%  Similarity=0.158  Sum_probs=107.6

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH--cC-C-CCcEEEEEcCcccccccCCCceeEE
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR--YG-L-QDIIEIRQGSWFGKLKDVEGKLSGV  270 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~--~g-l-~~~v~~~~gD~~~~l~~~~~~fDlI  270 (371)
                      .+.+|||+|||+|.++..+++.. +..+|++||+|+.+++.|++|+..  .+ + .++++++.+|..+.+....++||+|
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I  155 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence            45799999999999999999863 567999999999999999999865  22 2 3579999999977554345789999


Q ss_pred             EEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCc-----CcHHHHHHHHhcc
Q 017476          271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGE-----KQCKFLKNYLEND  345 (371)
Q Consensus       271 vsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~-----~q~~~v~~~l~~~  345 (371)
                      ++|++.....  .         .|...+        ....+++.+.+.|+|||++++.....     .....+.+.+++ 
T Consensus       156 i~d~~~~~~~--~---------~~~~~l--------~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~-  215 (314)
T 1uir_A          156 IIDLTDPVGE--D---------NPARLL--------YTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVRE-  215 (314)
T ss_dssp             EEECCCCBST--T---------CGGGGG--------SSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHT-
T ss_pred             EECCCCcccc--c---------Ccchhc--------cHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHH-
Confidence            9997752200  0         000000        12378888999999999999986321     223455555553 


Q ss_pred             ccCCceeEEEEe----cCCCCceEEEEEe
Q 017476          346 SACSFCNVSIVS----DFAGIQRFVTGFR  370 (371)
Q Consensus       346 ~~~gf~~v~~~~----Dl~g~~R~~~a~~  370 (371)
                         -|..+..+.    -+.|..-|++|.|
T Consensus       216 ---~F~~v~~~~~~vP~~~g~~~~~~as~  241 (314)
T 1uir_A          216 ---AFRYVRSYKNHIPGFFLNFGFLLASD  241 (314)
T ss_dssp             ---TCSEEEEEEEEEGGGTEEEEEEEEES
T ss_pred             ---HCCceEEEEEecCCCCCeEEEEEEEC
Confidence               377766543    3456777787765

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.46  E-value=5.5e-13  Score=120.90  Aligned_cols=104  Identities=18%  Similarity=0.248  Sum_probs=84.7

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC----CCcEEEEEcCcccccccCCCceeEE
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGL----QDIIEIRQGSWFGKLKDVEGKLSGV  270 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl----~~~v~~~~gD~~~~l~~~~~~fDlI  270 (371)
                      ++.+|||+|||+|.++..+++.+++..+|+|+|+++.+++.|++|+..++.    .++++++++|+.+.... .++||+|
T Consensus        77 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~i  155 (226)
T 1i1n_A           77 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAE-EAPYDAI  155 (226)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGG-GCCEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCccc-CCCcCEE
Confidence            467999999999999999999865557999999999999999999998764    34699999998754322 3689999


Q ss_pred             EEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC
Q 017476          271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG  331 (371)
Q Consensus       271 vsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~  331 (371)
                      +++.++.                                .+++.+.+.|||||++++.+..
T Consensus       156 ~~~~~~~--------------------------------~~~~~~~~~LkpgG~lv~~~~~  184 (226)
T 1i1n_A          156 HVGAAAP--------------------------------VVPQALIDQLKPGGRLILPVGP  184 (226)
T ss_dssp             EECSBBS--------------------------------SCCHHHHHTEEEEEEEEEEESC
T ss_pred             EECCchH--------------------------------HHHHHHHHhcCCCcEEEEEEec
Confidence            9987651                                1234566899999999999853

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.46  E-value=1.8e-13  Score=126.17  Aligned_cols=143  Identities=16%  Similarity=0.210  Sum_probs=103.9

Q ss_pred             CCccccc-chHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHH---hCCCcEEEEEeCCHHHHHHHHHHHHH
Q 017476          167 EGVFIPR-PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARV---LGSKGSIIAVDLNPLAAAVAAFNAQR  242 (371)
Q Consensus       167 ~~vliPr-p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~---~~~~~~V~gvDis~~al~~A~~n~~~  242 (371)
                      .++.+++ |+++.++..++...       ++.+|||+|||+|..++.+++.   +.++++|+|||+|+.+++.|+     
T Consensus        59 ~~~~~~~~p~~~~~l~~~l~~~-------~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~-----  126 (236)
T 2bm8_A           59 RGLRMLKDPDTQAVYHDMLWEL-------RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-----  126 (236)
T ss_dssp             TTEECCSCHHHHHHHHHHHHHH-------CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-----
T ss_pred             ccccccCCHHHHHHHHHHHHhc-------CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh-----
Confidence            3566777 88888887776654       3569999999999999999987   347789999999999999887     


Q ss_pred             cCCCCcEEEEEcCcccc--cccCC-CceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhc-c
Q 017476          243 YGLQDIIEIRQGSWFGK--LKDVE-GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTAS-M  318 (371)
Q Consensus       243 ~gl~~~v~~~~gD~~~~--l~~~~-~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~-~  318 (371)
                       ++.++++++++|+.+.  ++... .+||+|+++..                |.             .+..++..+.+ .
T Consensus       127 -~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~----------------~~-------------~~~~~l~~~~r~~  176 (236)
T 2bm8_A          127 -SDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA----------------HA-------------NTFNIMKWAVDHL  176 (236)
T ss_dssp             -GGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS----------------CS-------------SHHHHHHHHHHHT
T ss_pred             -ccCCceEEEECcchhHHHHHhhccCCCCEEEECCc----------------hH-------------hHHHHHHHHHHhh
Confidence             2235699999999774  33222 37999998532                00             13467888886 9


Q ss_pred             cccCcEEEEEEC-----CcCcHHHHHHHHhccccCCceeE
Q 017476          319 LKPGGFFAFETN-----GEKQCKFLKNYLENDSACSFCNV  353 (371)
Q Consensus       319 LkpgG~lvle~~-----~~~q~~~v~~~l~~~~~~gf~~v  353 (371)
                      |||||+++++..     +. ..+.+.+++++. ..+|...
T Consensus       177 LkpGG~lv~~d~~~~~~~~-~~~~~~~~l~~~-~~~f~~~  214 (236)
T 2bm8_A          177 LEEGDYFIIEDMIPYWYRY-APQLFSEYLGAF-RDVLSMD  214 (236)
T ss_dssp             CCTTCEEEECSCHHHHHHH-CHHHHHHHHHTT-TTTEEEE
T ss_pred             CCCCCEEEEEeCccccccc-CHHHHHHHHHhC-cccEEEc
Confidence            999999999641     12 234788888864 1257543

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.46  E-value=3.2e-13  Score=123.74  Aligned_cols=141  Identities=19%  Similarity=0.126  Sum_probs=100.1

Q ss_pred             hHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q 017476          175 ETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG  254 (371)
Q Consensus       175 ~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~g  254 (371)
                      ..+.+.+.+...+ ..  ..++.+|||+|||+|.++..+++.   +.+|+|+|+|+.+++.|+++         ++++.+
T Consensus        24 ~~~~~~~~~~~~l-~~--~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~---------~~~~~~   88 (240)
T 3dli_A           24 SRELVKARLRRYI-PY--FKGCRRVLDIGCGRGEFLELCKEE---GIESIGVDINEDMIKFCEGK---------FNVVKS   88 (240)
T ss_dssp             CHHHHHHHHGGGG-GG--TTTCSCEEEETCTTTHHHHHHHHH---TCCEEEECSCHHHHHHHHTT---------SEEECS
T ss_pred             CHHHHHHHHHHHH-hh--hcCCCeEEEEeCCCCHHHHHHHhC---CCcEEEEECCHHHHHHHHhh---------cceeec
Confidence            3445555554444 21  224579999999999999999886   45899999999999999876         688899


Q ss_pred             Cccccc-ccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcC
Q 017476          255 SWFGKL-KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEK  333 (371)
Q Consensus       255 D~~~~l-~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~  333 (371)
                      |..+.+ +...++||+|+++-              +..|-+.          ..+..+++.+.+.|||||++++...+..
T Consensus        89 d~~~~~~~~~~~~fD~i~~~~--------------~l~~~~~----------~~~~~~l~~~~~~LkpgG~l~~~~~~~~  144 (240)
T 3dli_A           89 DAIEYLKSLPDKYLDGVMISH--------------FVEHLDP----------ERLFELLSLCYSKMKYSSYIVIESPNPT  144 (240)
T ss_dssp             CHHHHHHTSCTTCBSEEEEES--------------CGGGSCG----------GGHHHHHHHHHHHBCTTCCEEEEEECTT
T ss_pred             cHHHHhhhcCCCCeeEEEECC--------------chhhCCc----------HHHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence            987643 22247899999952              1122211          1244788999999999999999875332


Q ss_pred             ------------------cHHHHHHHHhccccCCceeEEEEe
Q 017476          334 ------------------QCKFLKNYLENDSACSFCNVSIVS  357 (371)
Q Consensus       334 ------------------q~~~v~~~l~~~~~~gf~~v~~~~  357 (371)
                                        ..+.+.+++++   .||..+++..
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---aGf~~~~~~~  183 (240)
T 3dli_A          145 SLYSLINFYIDPTHKKPVHPETLKFILEY---LGFRDVKIEF  183 (240)
T ss_dssp             SHHHHHHHTTSTTCCSCCCHHHHHHHHHH---HTCEEEEEEE
T ss_pred             hhHHHHHHhcCccccccCCHHHHHHHHHH---CCCeEEEEEE
Confidence                              23567778875   6898766643

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.45  E-value=1.6e-12  Score=118.50  Aligned_cols=140  Identities=11%  Similarity=0.125  Sum_probs=103.3

Q ss_pred             HHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcc
Q 017476          178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF  257 (371)
Q Consensus       178 ~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~  257 (371)
                      .+.+.+...+      .++.+|||+|||+|.++..+++.   +.+|+|+|+|+.+++.|+++.    ...+++++++|+.
T Consensus        42 ~~~~~l~~~~------~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~~~d~~  108 (242)
T 3l8d_A           42 TIIPFFEQYV------KKEAEVLDVGCGDGYGTYKLSRT---GYKAVGVDISEVMIQKGKERG----EGPDLSFIKGDLS  108 (242)
T ss_dssp             THHHHHHHHS------CTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHTTT----CBTTEEEEECBTT
T ss_pred             HHHHHHHHHc------CCCCeEEEEcCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhc----ccCCceEEEcchh
Confidence            4455555444      14569999999999999999985   569999999999999999874    2345999999997


Q ss_pred             cccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCc-----
Q 017476          258 GKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGE-----  332 (371)
Q Consensus       258 ~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~-----  332 (371)
                      +. +...++||+|+++-.+.              |-+            ....+++.+.+.|+|||++++...+.     
T Consensus       109 ~~-~~~~~~fD~v~~~~~l~--------------~~~------------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~  161 (242)
T 3l8d_A          109 SL-PFENEQFEAIMAINSLE--------------WTE------------EPLRALNEIKRVLKSDGYACIAILGPTAKPR  161 (242)
T ss_dssp             BC-SSCTTCEEEEEEESCTT--------------SSS------------CHHHHHHHHHHHEEEEEEEEEEEECTTCGGG
T ss_pred             cC-CCCCCCccEEEEcChHh--------------hcc------------CHHHHHHHHHHHhCCCeEEEEEEcCCcchhh
Confidence            63 33357899999964332              111            12368889999999999999976321     


Q ss_pred             ----------------CcHHHHHHHHhccccCCceeEEEEecCC
Q 017476          333 ----------------KQCKFLKNYLENDSACSFCNVSIVSDFA  360 (371)
Q Consensus       333 ----------------~q~~~v~~~l~~~~~~gf~~v~~~~Dl~  360 (371)
                                      ...+.+.+++++   .||..+++...+.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~Gf~~~~~~~~~~  202 (242)
T 3l8d_A          162 ENSYPRLYGKDVVCNTMMPWEFEQLVKE---QGFKVVDGIGVYK  202 (242)
T ss_dssp             GGGGGGGGTCCCSSCCCCHHHHHHHHHH---TTEEEEEEEEEEC
T ss_pred             hhhhhhhccccccccCCCHHHHHHHHHH---cCCEEEEeecccc
Confidence                            234578888886   7898888765443

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.45  E-value=7.4e-13  Score=125.47  Aligned_cols=117  Identities=15%  Similarity=0.123  Sum_probs=90.2

Q ss_pred             HHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEEcCc
Q 017476          178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY-GLQDIIEIRQGSW  256 (371)
Q Consensus       178 ~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~-gl~~~v~~~~gD~  256 (371)
                      .+.+.+....     ..++.+|||+|||+|.++..+++.+.+..+|+|+|+|+.+++.|++++... +...+++++++|+
T Consensus        24 ~~~~~l~~~~-----~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~   98 (299)
T 3g5t_A           24 DFYKMIDEYH-----DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSS   98 (299)
T ss_dssp             HHHHHHHHHC-----CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCT
T ss_pred             HHHHHHHHHh-----cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCH
Confidence            3455555443     124679999999999999999986546789999999999999999999887 4556799999999


Q ss_pred             ccccccCC------CceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEE
Q 017476          257 FGKLKDVE------GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF  327 (371)
Q Consensus       257 ~~~l~~~~------~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvl  327 (371)
                      .+.. ...      ++||+|+++-..              .|            + ....+++.+.+.|+|||.+++
T Consensus        99 ~~~~-~~~~~~~~~~~fD~V~~~~~l--------------~~------------~-~~~~~l~~~~~~LkpgG~l~i  147 (299)
T 3g5t_A           99 DDFK-FLGADSVDKQKIDMITAVECA--------------HW------------F-DFEKFQRSAYANLRKDGTIAI  147 (299)
T ss_dssp             TCCG-GGCTTTTTSSCEEEEEEESCG--------------GG------------S-CHHHHHHHHHHHEEEEEEEEE
T ss_pred             HhCC-ccccccccCCCeeEEeHhhHH--------------HH------------h-CHHHHHHHHHHhcCCCcEEEE
Confidence            7632 223      689999996322              11            1 134788899999999999988

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.45  E-value=1.5e-12  Score=125.20  Aligned_cols=141  Identities=16%  Similarity=0.116  Sum_probs=109.1

Q ss_pred             CeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCC
Q 017476          197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPY  276 (371)
Q Consensus       197 ~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPY  276 (371)
                      .+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.|++++...++.++++++.+|++++.+   +.||+|+++-..
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~D~v~~~~vl  243 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAE-PSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQEVP---SNGDIYLLSRII  243 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTCCC---SSCSEEEEESCG
T ss_pred             CEEEEeCCCchHHHHHHHHHC-CCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCCCC---CCCCEEEEchhc
Confidence            799999999999999999986 7889999999 99999999999888877789999999987533   579999984221


Q ss_pred             CCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC------------------------c
Q 017476          277 IPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG------------------------E  332 (371)
Q Consensus       277 i~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~------------------------~  332 (371)
                      .      ++.                  -+....+++.+.+.|+|||++++....                        .
T Consensus       244 ~------~~~------------------~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (334)
T 2ip2_A          244 G------DLD------------------EAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRH  299 (334)
T ss_dssp             G------GCC------------------HHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCC
T ss_pred             c------CCC------------------HHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcC
Confidence            1      111                  122347899999999999999886311                        1


Q ss_pred             CcHHHHHHHHhccccCCceeEEEEecCCCCceEEEEEe
Q 017476          333 KQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFR  370 (371)
Q Consensus       333 ~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~~  370 (371)
                      ...+++.+++++   .||..+++... .+...++.+++
T Consensus       300 ~t~~e~~~ll~~---aGf~~~~~~~~-~~~~~~i~~~~  333 (334)
T 2ip2_A          300 RTTEEVVDLLGR---GGFAVERIVDL-PMETRMIVAAR  333 (334)
T ss_dssp             CBHHHHHHHHHH---TTEEEEEEEEE-TTTEEEEEEEE
T ss_pred             CCHHHHHHHHHH---CCCceeEEEEC-CCCCEEEEEEe
Confidence            235566777775   78998888764 45566777765

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.45  E-value=1.2e-12  Score=117.88  Aligned_cols=101  Identities=15%  Similarity=0.210  Sum_probs=79.4

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|.++..+++.   +.+|+|+|+|+.+++.|++++.     .+++++++|+.+.. .. ++||+|+++-
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~~-~~-~~fD~v~~~~  114 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLA---GRTVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSFE-VP-TSIDTIVSTY  114 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHT---TCEEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSCC-CC-SCCSEEEEES
T ss_pred             CCCeEEEeCCCCCHHHHHHHhC---CCeEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhcC-CC-CCeEEEEECc
Confidence            4669999999999999999985   5799999999999999998864     45899999997643 22 7899999963


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      .+              .|-+.          .....+++.+.+.|||||.+++..
T Consensus       115 ~l--------------~~~~~----------~~~~~~l~~~~~~LkpgG~l~i~~  145 (220)
T 3hnr_A          115 AF--------------HHLTD----------DEKNVAIAKYSQLLNKGGKIVFAD  145 (220)
T ss_dssp             CG--------------GGSCH----------HHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             ch--------------hcCCh----------HHHHHHHHHHHHhcCCCCEEEEEe
Confidence            32              11111          111248889999999999999985

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.45  E-value=4e-13  Score=125.43  Aligned_cols=136  Identities=15%  Similarity=0.042  Sum_probs=94.9

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC----------------------------
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGL----------------------------  245 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl----------------------------  245 (371)
                      .++.+|||+|||+|.+++.++..  ...+|+|+|+|+.+++.|+++++....                            
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~--~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL  131 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             CCCceEEEeCCCccHHHHHHHHh--hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence            45679999999999887766653  224799999999999999998754320                            


Q ss_pred             CCcEE-EEEcCccccccc---CCCceeEEEEcCCCCCCCCcccchhhhccc-CccccccCCCCcHHHHHHHHHHHhcccc
Q 017476          246 QDIIE-IRQGSWFGKLKD---VEGKLSGVVSNPPYIPSDDISGLQVEVGKH-EPRLALDGGVDGLDYLLHLCNGTASMLK  320 (371)
Q Consensus       246 ~~~v~-~~~gD~~~~l~~---~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~-ep~~aL~gg~dGl~~~~~il~~a~~~Lk  320 (371)
                      ..++. ++++|+.+..+.   ..++||+|+++-              +..| .+         -.+.+..+++++.++||
T Consensus       132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~--------------~l~~i~~---------~~~~~~~~l~~i~r~LK  188 (263)
T 2a14_A          132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLL--------------AMECACC---------SLDAYRAALCNLASLLK  188 (263)
T ss_dssp             HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEES--------------CHHHHCS---------SHHHHHHHHHHHHTTEE
T ss_pred             HhhhheEEeccccCCCCCCccccCCCCEeeehH--------------HHHHhcC---------CHHHHHHHHHHHHHHcC
Confidence            01244 899999774221   146899999941              1111 00         03456689999999999


Q ss_pred             cCcEEEEEEC-C--------------cCcHHHHHHHHhccccCCceeEEEEe
Q 017476          321 PGGFFAFETN-G--------------EKQCKFLKNYLENDSACSFCNVSIVS  357 (371)
Q Consensus       321 pgG~lvle~~-~--------------~~q~~~v~~~l~~~~~~gf~~v~~~~  357 (371)
                      |||++++... +              ....+.+.+++++   .||..+++..
T Consensus       189 PGG~li~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~---aGF~i~~~~~  237 (263)
T 2a14_A          189 PGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLD---AGFDIEQLLH  237 (263)
T ss_dssp             EEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHH---TTEEEEEEEE
T ss_pred             CCcEEEEEEeecCccceeCCeEeeccccCHHHHHHHHHH---CCCEEEEEee
Confidence            9999999741 1              1146678888886   7898776654

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.44  E-value=6.3e-13  Score=140.84  Aligned_cols=135  Identities=19%  Similarity=0.121  Sum_probs=98.3

Q ss_pred             ccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHh----------------------------------
Q 017476          172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVL----------------------------------  217 (371)
Q Consensus       172 Prp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~----------------------------------  217 (371)
                      +.|..|.++..++...    ...++..|+|++||||.+++.+|...                                  
T Consensus       171 ~apl~e~LAa~ll~~~----~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~  246 (703)
T 3v97_A          171 IAPIKETLAAAIVMRS----GWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQT  246 (703)
T ss_dssp             CCSSCHHHHHHHHHHT----TCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHhh----CCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHH
Confidence            3466778888777655    23346689999999999999988752                                  


Q ss_pred             -------CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccC-CCceeEEEEcCCCCCCCCcccchhhh
Q 017476          218 -------GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV-EGKLSGVVSNPPYIPSDDISGLQVEV  289 (371)
Q Consensus       218 -------~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~-~~~fDlIvsNPPYi~~~~~~~l~~ev  289 (371)
                             .+..+|+|+|+++.+++.|++|+..+|+.+.++|.++|+.+..... .++||+||+||||...-.        
T Consensus       247 ~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg--------  318 (703)
T 3v97_A          247 RARKGLAEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLD--------  318 (703)
T ss_dssp             HHHHHHHHCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC-----------
T ss_pred             HhhhccccCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCcccccc--------
Confidence                   0225899999999999999999999999988999999998743222 238999999999953210        


Q ss_pred             cccCccccccCCCCcH-HHHHHHHHHHhcccccCcEEEEEEC
Q 017476          290 GKHEPRLALDGGVDGL-DYLLHLCNGTASMLKPGGFFAFETN  330 (371)
Q Consensus       290 ~~~ep~~aL~gg~dGl-~~~~~il~~a~~~LkpgG~lvle~~  330 (371)
                                 ....+ +.|+ .+....+.+.|||.+++.++
T Consensus       319 -----------~~~~l~~ly~-~l~~~lk~~~~g~~~~ilt~  348 (703)
T 3v97_A          319 -----------SEPALIALHS-LLGRIMKNQFGGWNLSLFSA  348 (703)
T ss_dssp             -----------CCHHHHHHHH-HHHHHHHHHCTTCEEEEEES
T ss_pred             -----------chhHHHHHHH-HHHHHHHhhCCCCeEEEEeC
Confidence                       00011 2333 33445556678999999984

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.44  E-value=3.5e-13  Score=131.36  Aligned_cols=107  Identities=17%  Similarity=0.190  Sum_probs=85.7

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|.++..+++.  +..+|+|+|+|+ +++.|++|++.+++.++++++++|+.+. +...++||+|++|+
T Consensus        66 ~~~~VLDvGcG~G~~~~~la~~--g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~Iis~~  141 (349)
T 3q7e_A           66 KDKVVLDVGSGTGILCMFAAKA--GARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEV-ELPVEKVDIIISEW  141 (349)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHT--TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTC-CCSSSCEEEEEECC
T ss_pred             CCCEEEEEeccchHHHHHHHHC--CCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHc-cCCCCceEEEEEcc
Confidence            4679999999999999999985  556999999995 9999999999999998999999999764 22247999999987


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE  328 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle  328 (371)
                      +....           .++            .....++..+.++|||||+++.+
T Consensus       142 ~~~~l-----------~~~------------~~~~~~l~~~~r~LkpgG~li~~  172 (349)
T 3q7e_A          142 MGYCL-----------FYE------------SMLNTVLHARDKWLAPDGLIFPD  172 (349)
T ss_dssp             CBBTB-----------TBT------------CCHHHHHHHHHHHEEEEEEEESC
T ss_pred             ccccc-----------cCc------------hhHHHHHHHHHHhCCCCCEEccc
Confidence            53210           111            11336788888999999998654

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.44  E-value=8.3e-13  Score=117.59  Aligned_cols=110  Identities=21%  Similarity=0.212  Sum_probs=80.1

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|.+++.+++.  +..+|+|+|+|+.+++.|++|+.      +++++++|+.+ ++   ++||+|++||
T Consensus        51 ~~~~vlD~gcG~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~~~-~~---~~~D~v~~~~  118 (200)
T 1ne2_A           51 GGRSVIDAGTGNGILACGSYLL--GAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSE-IS---GKYDTWIMNP  118 (200)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHT--TBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGG-CC---CCEEEEEECC
T ss_pred             CCCEEEEEeCCccHHHHHHHHc--CCCEEEEEECCHHHHHHHHHhcC------CCEEEECcHHH-CC---CCeeEEEECC
Confidence            4679999999999999999985  44589999999999999999875      48999999976 32   6899999999


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhc
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLEN  344 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~  344 (371)
                      ||.....                      |  ....+++.+.+.+  | .+++.++ ......+.+.+.+
T Consensus       119 p~~~~~~----------------------~--~~~~~l~~~~~~~--g-~~~~~~~-~~~~~~~~~~~~~  160 (200)
T 1ne2_A          119 PFGSVVK----------------------H--SDRAFIDKAFETS--M-WIYSIGN-AKARDFLRREFSA  160 (200)
T ss_dssp             CC-------------------------------CHHHHHHHHHHE--E-EEEEEEE-GGGHHHHHHHHHH
T ss_pred             CchhccC----------------------c--hhHHHHHHHHHhc--C-cEEEEEc-CchHHHHHHHHHH
Confidence            9964321                      0  0124566666666  4 4555553 3455667777765

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.44  E-value=2.7e-12  Score=114.85  Aligned_cols=101  Identities=23%  Similarity=0.275  Sum_probs=80.2

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|.++..+++.   +.+|+|+|+|+.+++.|++    .+.. +++++++|+.+..  ..++||+|+++-
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~----~~~~-~~~~~~~d~~~~~--~~~~~D~v~~~~  115 (218)
T 3ou2_A           46 IRGDVLELASGTGYWTRHLSGL---ADRVTALDGSAEMIAEAGR----HGLD-NVEFRQQDLFDWT--PDRQWDAVFFAH  115 (218)
T ss_dssp             SCSEEEEESCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHGG----GCCT-TEEEEECCTTSCC--CSSCEEEEEEES
T ss_pred             CCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHh----cCCC-CeEEEecccccCC--CCCceeEEEEec
Confidence            4569999999999999999986   4699999999999999988    4543 5999999997762  347999999952


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                                    +..|-+.          .....+++.+.+.|+|||.+++..
T Consensus       116 --------------~l~~~~~----------~~~~~~l~~~~~~L~pgG~l~~~~  146 (218)
T 3ou2_A          116 --------------WLAHVPD----------DRFEAFWESVRSAVAPGGVVEFVD  146 (218)
T ss_dssp             --------------CGGGSCH----------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             --------------hhhcCCH----------HHHHHHHHHHHHHcCCCeEEEEEe
Confidence                          1122211          224578999999999999998874

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.43  E-value=6.3e-13  Score=129.46  Aligned_cols=121  Identities=20%  Similarity=0.176  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcC
Q 017476          176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGS  255 (371)
Q Consensus       176 te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD  255 (371)
                      ++.+.+.+.+.+    ...++.+|||+|||+|.++..+++.  +..+|+|+|+|+ +++.|+++++.+++.++++++.+|
T Consensus        35 ~~~y~~~i~~~l----~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d  107 (348)
T 2y1w_A           35 TGTYQRAILQNH----TDFKDKIVLDVGCGSGILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGK  107 (348)
T ss_dssp             HHHHHHHHHHTG----GGTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESC
T ss_pred             HHHHHHHHHhcc----ccCCcCEEEEcCCCccHHHHHHHhC--CCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcc
Confidence            444555555544    2235679999999999999999984  456999999997 889999999999998889999999


Q ss_pred             cccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          256 WFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       256 ~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      +.+..  ..++||+|++++++...      ..                  +.+...+..+.++|||||.+++..
T Consensus       108 ~~~~~--~~~~~D~Ivs~~~~~~~------~~------------------~~~~~~l~~~~~~LkpgG~li~~~  155 (348)
T 2y1w_A          108 VEEVS--LPEQVDIIISEPMGYML------FN------------------ERMLESYLHAKKYLKPSGNMFPTI  155 (348)
T ss_dssp             TTTCC--CSSCEEEEEECCCBTTB------TT------------------TSHHHHHHHGGGGEEEEEEEESCE
T ss_pred             hhhCC--CCCceeEEEEeCchhcC------Ch------------------HHHHHHHHHHHhhcCCCeEEEEec
Confidence            97632  23689999999874310      00                  012245667889999999998754

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.43  E-value=2.2e-13  Score=125.44  Aligned_cols=110  Identities=16%  Similarity=0.197  Sum_probs=84.7

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc-CCCceeEEEEc
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VEGKLSGVVSN  273 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~-~~~~fDlIvsN  273 (371)
                      ++++|||+|||+|..+..+++.  ...+|+|||+|+.+++.|+++....+.  +++++.+|+.+.... ..+.||.|+.+
T Consensus        60 ~G~rVLdiG~G~G~~~~~~~~~--~~~~v~~id~~~~~~~~a~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~FD~i~~D  135 (236)
T 3orh_A           60 KGGRVLEVGFGMAIAASKVQEA--PIDEHWIIECNDGVFQRLRDWAPRQTH--KVIPLKGLWEDVAPTLPDGHFDGILYD  135 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHTTS--CEEEEEEEECCHHHHHHHHHHGGGCSS--EEEEEESCHHHHGGGSCTTCEEEEEEC
T ss_pred             CCCeEEEECCCccHHHHHHHHh--CCcEEEEEeCCHHHHHHHHHHHhhCCC--ceEEEeehHHhhcccccccCCceEEEe
Confidence            4679999999999999999885  346899999999999999999887663  589999998654322 24789999987


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      +.....         ...|            +.....+++++.++|||||+|++..
T Consensus       136 ~~~~~~---------~~~~------------~~~~~~~~~e~~rvLkPGG~l~f~~  170 (236)
T 3orh_A          136 TYPLSE---------ETWH------------THQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             CCCCBG---------GGTT------------THHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             eeeccc---------chhh------------hcchhhhhhhhhheeCCCCEEEEEe
Confidence            543211         1111            3345678899999999999998853

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.43  E-value=8.4e-13  Score=120.86  Aligned_cols=114  Identities=17%  Similarity=0.203  Sum_probs=88.3

Q ss_pred             HHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcc
Q 017476          178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF  257 (371)
Q Consensus       178 ~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~  257 (371)
                      .++..+++.+    ...++.+|||+|||+|.++..+++.. + .+|+++|+++.+++.|++|+...++.+ ++++.+|+.
T Consensus        78 ~~~~~~~~~l----~~~~~~~vLdiG~G~G~~~~~la~~~-~-~~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~  150 (235)
T 1jg1_A           78 HMVAIMLEIA----NLKPGMNILEVGTGSGWNAALISEIV-K-TDVYTIERIPELVEFAKRNLERAGVKN-VHVILGDGS  150 (235)
T ss_dssp             HHHHHHHHHH----TCCTTCCEEEECCTTSHHHHHHHHHH-C-SCEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGG
T ss_pred             HHHHHHHHhc----CCCCCCEEEEEeCCcCHHHHHHHHHh-C-CEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEECCcc
Confidence            3445555554    23356799999999999999999986 4 799999999999999999999999876 999999985


Q ss_pred             cccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC
Q 017476          258 GKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG  331 (371)
Q Consensus       258 ~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~  331 (371)
                      ..++. .++||+|+++.+..              +                  +.+.+.+.|+|||++++.++.
T Consensus       151 ~~~~~-~~~fD~Ii~~~~~~--------------~------------------~~~~~~~~L~pgG~lvi~~~~  191 (235)
T 1jg1_A          151 KGFPP-KAPYDVIIVTAGAP--------------K------------------IPEPLIEQLKIGGKLIIPVGS  191 (235)
T ss_dssp             GCCGG-GCCEEEEEECSBBS--------------S------------------CCHHHHHTEEEEEEEEEEECS
T ss_pred             cCCCC-CCCccEEEECCcHH--------------H------------------HHHHHHHhcCCCcEEEEEEec
Confidence            54443 24699999975431              0                  112456799999999999954

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.43  E-value=4.6e-13  Score=132.50  Aligned_cols=103  Identities=18%  Similarity=0.068  Sum_probs=87.6

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCCc-EEEEEcCcccccc-cCCCceeEEEE
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGSK-GSIIAVDLNPLAAAVAAFNAQRYGLQDI-IEIRQGSWFGKLK-DVEGKLSGVVS  272 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~~-~~V~gvDis~~al~~A~~n~~~~gl~~~-v~~~~gD~~~~l~-~~~~~fDlIvs  272 (371)
                      +.+|||++||+|.+++.++++. .+ .+|+++|+++.+++.+++|++.++++++ ++++++|..+.+. ...++||+|+.
T Consensus        53 g~~VLDlfaGtG~~sl~aa~~~-~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l  131 (392)
T 3axs_A           53 PVKVADPLSASGIRAIRFLLET-SCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL  131 (392)
T ss_dssp             CEEEEESSCTTSHHHHHHHHHC-SCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred             CCEEEECCCcccHHHHHHHHhC-CCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence            5699999999999999999974 33 6899999999999999999999999887 9999999987665 44468999999


Q ss_pred             cCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       273 NPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      || |..                             ...+++.+.+.|++||++++++
T Consensus       132 DP-~g~-----------------------------~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          132 DP-FGT-----------------------------PVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             CC-SSC-----------------------------CHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CC-CcC-----------------------------HHHHHHHHHHHhCCCCEEEEEe
Confidence            98 310                             0146777888999999999988

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.43  E-value=1.4e-12  Score=120.47  Aligned_cols=138  Identities=13%  Similarity=0.054  Sum_probs=99.7

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC----------------------------
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGL----------------------------  245 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl----------------------------  245 (371)
                      .++.+|||+|||+|.++..+++.. . .+|+|+|+|+.+++.|++++...+.                            
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~-~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  132 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACES-F-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL  132 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGT-E-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhcc-c-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence            456799999999999999988752 2 5999999999999999998764321                            


Q ss_pred             CCcE-EEEEcCcccccccCC---CceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhccccc
Q 017476          246 QDII-EIRQGSWFGKLKDVE---GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKP  321 (371)
Q Consensus       246 ~~~v-~~~~gD~~~~l~~~~---~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~Lkp  321 (371)
                      ..++ +++++|+.+......   ++||+|+++--              ..+-        ......+..+++.+.++|+|
T Consensus       133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~--------------l~~~--------~~~~~~~~~~l~~~~~~Lkp  190 (265)
T 2i62_A          133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLC--------------LDAA--------CPDLPAYRTALRNLGSLLKP  190 (265)
T ss_dssp             HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESC--------------HHHH--------CSSHHHHHHHHHHHHTTEEE
T ss_pred             hhhheeEEEeeeccCCCCCccccCCccEEEEhhh--------------hhhh--------cCChHHHHHHHHHHHhhCCC
Confidence            1127 899999976533223   68999999521              1100        00134567899999999999


Q ss_pred             CcEEEEEEC---------------CcCcHHHHHHHHhccccCCceeEEEEec
Q 017476          322 GGFFAFETN---------------GEKQCKFLKNYLENDSACSFCNVSIVSD  358 (371)
Q Consensus       322 gG~lvle~~---------------~~~q~~~v~~~l~~~~~~gf~~v~~~~D  358 (371)
                      ||++++...               .....+.+.+++++   .||..+++...
T Consensus       191 gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---aGf~~~~~~~~  239 (265)
T 2i62_A          191 GGFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEE---AGYTIEQFEVI  239 (265)
T ss_dssp             EEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHH---TTCEEEEEEEE
T ss_pred             CcEEEEEecCCCceEEcCCccccccccCHHHHHHHHHH---CCCEEEEEEEe
Confidence            999998641               11245678888886   78988777654

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.42  E-value=1.6e-12  Score=121.02  Aligned_cols=111  Identities=14%  Similarity=0.054  Sum_probs=84.5

Q ss_pred             CCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHH------HHHHHHHHHHHcCCCCcEEEEEcC-ccc-ccccCC
Q 017476          193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPL------AAAVAAFNAQRYGLQDIIEIRQGS-WFG-KLKDVE  264 (371)
Q Consensus       193 ~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~------al~~A~~n~~~~gl~~~v~~~~gD-~~~-~l~~~~  264 (371)
                      ..++.+|||+|||+|.++..+++..++..+|+|+|+|+.      +++.|++++...++.++++++.+| +.. .++...
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  120 (275)
T 3bkx_A           41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIAD  120 (275)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTT
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCCC
Confidence            345679999999999999999998656689999999997      999999999988887789999998 432 222234


Q ss_pred             CceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          265 GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       265 ~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      ++||+|+++..+..              -+.            ...+++....+++|||++++..
T Consensus       121 ~~fD~v~~~~~l~~--------------~~~------------~~~~~~~~~~l~~~gG~l~~~~  159 (275)
T 3bkx_A          121 QHFDRVVLAHSLWY--------------FAS------------ANALALLFKNMAAVCDHVDVAE  159 (275)
T ss_dssp             CCCSEEEEESCGGG--------------SSC------------HHHHHHHHHHHTTTCSEEEEEE
T ss_pred             CCEEEEEEccchhh--------------CCC------------HHHHHHHHHHHhCCCCEEEEEE
Confidence            78999999765421              111            1135556666777899999854

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.42  E-value=3.9e-13  Score=123.05  Aligned_cols=110  Identities=16%  Similarity=0.191  Sum_probs=82.4

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc-cCCCceeEEEEc
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-DVEGKLSGVVSN  273 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~-~~~~~fDlIvsN  273 (371)
                      ++.+|||+|||+|.++..+++.  ...+|+|+|+|+.+++.|++++...+  .+++++++|+.+... ..+++||+|++|
T Consensus        60 ~~~~vLDiGcGtG~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~fD~V~~d  135 (236)
T 1zx0_A           60 KGGRVLEVGFGMAIAASKVQEA--PIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGILYD  135 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTS--CEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCTTCEEEEEEC
T ss_pred             CCCeEEEEeccCCHHHHHHHhc--CCCeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhhcccCCCceEEEEEC
Confidence            4569999999999999999763  34589999999999999999987766  469999999876422 224789999995


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                       .|..  ...         .++         ......+++++.++|||||++++..
T Consensus       136 -~~~~--~~~---------~~~---------~~~~~~~l~~~~r~LkpgG~l~~~~  170 (236)
T 1zx0_A          136 -TYPL--SEE---------TWH---------THQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             -CCCC--BGG---------GTT---------THHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             -Cccc--chh---------hhh---------hhhHHHHHHHHHHhcCCCeEEEEEe
Confidence             1211  000         000         2334578899999999999998754

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.42  E-value=2.3e-13  Score=124.68  Aligned_cols=110  Identities=16%  Similarity=0.096  Sum_probs=82.8

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCC-HHHHHHH---HHHHHHcCCCCcEEEEEcCcccccccCCCceeEE
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLN-PLAAAVA---AFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGV  270 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis-~~al~~A---~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlI  270 (371)
                      ++.+|||+|||+|.++..+++.. ++.+|+|||+| +.+++.|   ++++...++.+ +.++++|+.+......+.+|.|
T Consensus        24 ~~~~vLDiGCG~G~~~~~la~~~-~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~-v~~~~~d~~~l~~~~~d~v~~i  101 (225)
T 3p2e_A           24 FDRVHIDLGTGDGRNIYKLAIND-QNTFYIGIDPVKENLFDISKKIIKKPSKGGLSN-VVFVIAAAESLPFELKNIADSI  101 (225)
T ss_dssp             CSEEEEEETCTTSHHHHHHHHTC-TTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSS-EEEECCBTTBCCGGGTTCEEEE
T ss_pred             CCCEEEEEeccCcHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCC-eEEEEcCHHHhhhhccCeEEEE
Confidence            45699999999999999999763 78899999999 6666665   88888888764 9999999866422223679999


Q ss_pred             EEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEE
Q 017476          271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF  327 (371)
Q Consensus       271 vsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvl  327 (371)
                      ++|+|+...      ...+.               .....+++.+.+.|||||.+++
T Consensus       102 ~~~~~~~~~------~~~~~---------------~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A          102 SILFPWGTL------LEYVI---------------KPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             EEESCCHHH------HHHHH---------------TTCHHHHHHHHTTEEEEEEEEE
T ss_pred             EEeCCCcHH------hhhhh---------------cchHHHHHHHHHhcCCCcEEEE
Confidence            999886320      00000               0112578889999999999999

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.41  E-value=1.9e-12  Score=121.34  Aligned_cols=100  Identities=23%  Similarity=0.236  Sum_probs=79.7

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|.++..+++   ++.+|+|+|+|+.+++.|+++.      .+++++.+|+.+ ++. .++||+|+++.
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~-~~~-~~~fD~v~~~~  125 (279)
T 3ccf_A           57 PGEFILDLGCGTGQLTEKIAQ---SGAEVLGTDNAATMIEKARQNY------PHLHFDVADARN-FRV-DKPLDAVFSNA  125 (279)
T ss_dssp             TTCEEEEETCTTSHHHHHHHH---TTCEEEEEESCHHHHHHHHHHC------TTSCEEECCTTT-CCC-SSCEEEEEEES
T ss_pred             CCCEEEEecCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHhhC------CCCEEEECChhh-CCc-CCCcCEEEEcc
Confidence            467999999999999999998   4679999999999999999875      348899999876 332 47899999964


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG  331 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~  331 (371)
                      .+.              |-+            ....+++.+.+.|+|||++++...+
T Consensus       126 ~l~--------------~~~------------d~~~~l~~~~~~LkpgG~l~~~~~~  156 (279)
T 3ccf_A          126 MLH--------------WVK------------EPEAAIASIHQALKSGGRFVAEFGG  156 (279)
T ss_dssp             CGG--------------GCS------------CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             hhh--------------hCc------------CHHHHHHHHHHhcCCCcEEEEEecC
Confidence            321              111            1336888899999999999998753

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.41  E-value=2.1e-12  Score=117.70  Aligned_cols=102  Identities=20%  Similarity=0.134  Sum_probs=79.5

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|.++..+++.  ...+|+|+|+|+.+++.|+++...    .+++++++|+.+. ....++||+|+++.
T Consensus        43 ~~~~vLdiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~-~~~~~~fD~v~~~~  115 (243)
T 3bkw_A           43 GGLRIVDLGCGFGWFCRWAHEH--GASYVLGLDLSEKMLARARAAGPD----TGITYERADLDKL-HLPQDSFDLAYSSL  115 (243)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGGC-CCCTTCEEEEEEES
T ss_pred             CCCEEEEEcCcCCHHHHHHHHC--CCCeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhhc-cCCCCCceEEEEec
Confidence            5679999999999999999885  223999999999999999987542    3599999998763 22247899999964


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      .+.              |.+            ....+++.+.+.|+|||++++..
T Consensus       116 ~l~--------------~~~------------~~~~~l~~~~~~L~pgG~l~~~~  144 (243)
T 3bkw_A          116 ALH--------------YVE------------DVARLFRTVHQALSPGGHFVFST  144 (243)
T ss_dssp             CGG--------------GCS------------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccc--------------ccc------------hHHHHHHHHHHhcCcCcEEEEEe
Confidence            321              111            13378888999999999999965

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.41  E-value=6.8e-13  Score=128.19  Aligned_cols=106  Identities=19%  Similarity=0.171  Sum_probs=84.1

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|.++..+++.  +..+|+|+|+| .+++.|++|++.+++.++++++++|+.+. ....++||+|++|+
T Consensus        38 ~~~~VLDiGcGtG~ls~~la~~--g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~Ivs~~  113 (328)
T 1g6q_1           38 KDKIVLDVGCGTGILSMFAAKH--GAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDV-HLPFPKVDIIISEW  113 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT--CCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTS-CCSSSCEEEEEECC
T ss_pred             CCCEEEEecCccHHHHHHHHHC--CCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhc-cCCCCcccEEEEeC
Confidence            4569999999999999999985  45699999999 59999999999999988899999999763 22236899999998


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEE
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF  327 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvl  327 (371)
                      +....           .++            ..+..++..+.++|+|||.++.
T Consensus       114 ~~~~l-----------~~~------------~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          114 MGYFL-----------LYE------------SMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             CBTTB-----------STT------------CCHHHHHHHHHHHEEEEEEEES
T ss_pred             chhhc-----------ccH------------HHHHHHHHHHHhhcCCCeEEEE
Confidence            73211           111            1133677888899999999973

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.41  E-value=2.1e-12  Score=129.27  Aligned_cols=119  Identities=13%  Similarity=0.108  Sum_probs=88.4

Q ss_pred             HHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH-------HHHHHHcCCC-CcE
Q 017476          178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA-------AFNAQRYGLQ-DII  249 (371)
Q Consensus       178 ~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A-------~~n~~~~gl~-~~v  249 (371)
                      .++..+++.+    ...++.+|||+|||+|.+++.+|+.. +..+|+|||+++.+++.|       ++|+..+|+. +++
T Consensus       229 ~~v~~ml~~l----~l~~g~~VLDLGCGsG~la~~LA~~~-g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV  303 (433)
T 1u2z_A          229 NFLSDVYQQC----QLKKGDTFMDLGSGVGNCVVQAALEC-GCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNV  303 (433)
T ss_dssp             HHHHHHHHHT----TCCTTCEEEEESCTTSHHHHHHHHHH-CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCE
T ss_pred             HHHHHHHHhc----CCCCCCEEEEeCCCcCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCce
Confidence            3444555544    33456799999999999999999976 556899999999999999       9999998853 569


Q ss_pred             EEEEcCcccc---cccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEE
Q 017476          250 EIRQGSWFGK---LKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFA  326 (371)
Q Consensus       250 ~~~~gD~~~~---l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lv  326 (371)
                      +++++|.+..   +....+.||+|++|.....                           ......++.+.+.|||||.++
T Consensus       304 ~~i~gD~~~~~~~~~~~~~~FDvIvvn~~l~~---------------------------~d~~~~L~el~r~LKpGG~lV  356 (433)
T 1u2z_A          304 EFSLKKSFVDNNRVAELIPQCDVILVNNFLFD---------------------------EDLNKKVEKILQTAKVGCKII  356 (433)
T ss_dssp             EEEESSCSTTCHHHHHHGGGCSEEEECCTTCC---------------------------HHHHHHHHHHHTTCCTTCEEE
T ss_pred             EEEEcCccccccccccccCCCCEEEEeCcccc---------------------------ccHHHHHHHHHHhCCCCeEEE
Confidence            9999865431   1111368999999743210                           123356778889999999999


Q ss_pred             EE
Q 017476          327 FE  328 (371)
Q Consensus       327 le  328 (371)
                      +.
T Consensus       357 i~  358 (433)
T 1u2z_A          357 SL  358 (433)
T ss_dssp             ES
T ss_pred             Ee
Confidence            86

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.41  E-value=6e-13  Score=130.95  Aligned_cols=122  Identities=20%  Similarity=0.180  Sum_probs=89.3

Q ss_pred             chHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 017476          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ  253 (371)
Q Consensus       174 p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~  253 (371)
                      .-|+.+.+.+....    ...++++|||+|||+|.+++.+|+.  ...+|+|||.|+ +++.|+++++.+|+.++|++++
T Consensus        66 ~Rt~aY~~Ai~~~~----~~~~~k~VLDvG~GtGiLs~~Aa~a--GA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~  138 (376)
T 4hc4_A           66 VRTDAYRLGILRNW----AALRGKTVLDVGAGTGILSIFCAQA--GARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLP  138 (376)
T ss_dssp             HHHHHHHHHHHTTH----HHHTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEE
T ss_pred             HHHHHHHHHHHhCH----HhcCCCEEEEeCCCccHHHHHHHHh--CCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEe
Confidence            34555555554322    1235679999999999999988885  446899999997 8899999999999999999999


Q ss_pred             cCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEE
Q 017476          254 GSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF  327 (371)
Q Consensus       254 gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvl  327 (371)
                      +|+.+. . +.++||+|||++-           .....+|.            .+..++....++|+|||.++-
T Consensus       139 ~~~~~~-~-lpe~~DvivsE~~-----------~~~l~~e~------------~l~~~l~a~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          139 GPVETV-E-LPEQVDAIVSEWM-----------GYGLLHES------------MLSSVLHARTKWLKEGGLLLP  187 (376)
T ss_dssp             SCTTTC-C-CSSCEEEEECCCC-----------BTTBTTTC------------SHHHHHHHHHHHEEEEEEEES
T ss_pred             eeeeee-c-CCccccEEEeecc-----------cccccccc------------hhhhHHHHHHhhCCCCceECC
Confidence            998663 2 2478999999632           11112222            233677777789999998754

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.41  E-value=2.6e-12  Score=110.96  Aligned_cols=131  Identities=13%  Similarity=0.099  Sum_probs=94.6

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|.++..+++..   .+|+|+|+++.+++.|+++      .++++++.+|  .+.  ..++||+|+++.
T Consensus        17 ~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~------~~~v~~~~~d--~~~--~~~~~D~v~~~~   83 (170)
T 3i9f_A           17 KKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEK------FDSVITLSDP--KEI--PDNSVDFILFAN   83 (170)
T ss_dssp             CCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHH------CTTSEEESSG--GGS--CTTCEEEEEEES
T ss_pred             CCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHh------CCCcEEEeCC--CCC--CCCceEEEEEcc
Confidence            45699999999999999999864   4999999999999999988      2359999999  222  247899999975


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCc------------CcHHHHHHHH
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGE------------KQCKFLKNYL  342 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~------------~q~~~v~~~l  342 (371)
                      .+...              +            ....+++.+.+.|+|||++++.....            ...+++.+++
T Consensus        84 ~l~~~--------------~------------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  137 (170)
T 3i9f_A           84 SFHDM--------------D------------DKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWF  137 (170)
T ss_dssp             CSTTC--------------S------------CHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHT
T ss_pred             chhcc--------------c------------CHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHH
Confidence            43211              1            13378888999999999999975321            1245666666


Q ss_pred             hccccCCceeEEEEecCCCCceEEEEEe
Q 017476          343 ENDSACSFCNVSIVSDFAGIQRFVTGFR  370 (371)
Q Consensus       343 ~~~~~~gf~~v~~~~Dl~g~~R~~~a~~  370 (371)
                      +     ||..+++.. .....-.+++++
T Consensus       138 ~-----Gf~~~~~~~-~~~~~~~l~~~~  159 (170)
T 3i9f_A          138 S-----NFVVEKRFN-PTPYHFGLVLKR  159 (170)
T ss_dssp             T-----TEEEEEEEC-SSTTEEEEEEEE
T ss_pred             h-----CcEEEEccC-CCCceEEEEEec
Confidence            3     797776654 444444444443

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.40  E-value=1.5e-12  Score=117.29  Aligned_cols=110  Identities=19%  Similarity=0.190  Sum_probs=79.6

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH----HHcCCCCcEEEEEcCcccccccCCCceeEE
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA----QRYGLQDIIEIRQGSWFGKLKDVEGKLSGV  270 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~----~~~gl~~~v~~~~gD~~~~l~~~~~~fDlI  270 (371)
                      ++.+|||+|||+|.++..+++.. |+.+|+|+|+|+.+++.+.+++    ...+++ +++++++|+.+ ++...+. |.|
T Consensus        27 ~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~-~v~~~~~d~~~-l~~~~~~-d~v  102 (218)
T 3mq2_A           27 YDDVVLDVGTGDGKHPYKVARQN-PSRLVVALDADKSRMEKISAKAAAKPAKGGLP-NLLYLWATAER-LPPLSGV-GEL  102 (218)
T ss_dssp             SSEEEEEESCTTCHHHHHHHHHC-TTEEEEEEESCGGGGHHHHHHHTSCGGGTCCT-TEEEEECCSTT-CCSCCCE-EEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhhhhcCCC-ceEEEecchhh-CCCCCCC-CEE
Confidence            45699999999999999999984 7899999999999888644433    345554 59999999976 3333345 887


Q ss_pred             EEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       271 vsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      +.+.++...         ...|-+            ....+++.+.+.|||||.+++..
T Consensus       103 ~~~~~~~~~---------~~~~~~------------~~~~~l~~~~~~LkpgG~l~~~~  140 (218)
T 3mq2_A          103 HVLMPWGSL---------LRGVLG------------SSPEMLRGMAAVCRPGASFLVAL  140 (218)
T ss_dssp             EEESCCHHH---------HHHHHT------------SSSHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEccchhh---------hhhhhc------------cHHHHHHHHHHHcCCCcEEEEEe
Confidence            776554210         000100            01378889999999999999976

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.40  E-value=2e-12  Score=119.07  Aligned_cols=102  Identities=18%  Similarity=0.075  Sum_probs=82.9

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      .++.+|||+|||+|.++..+++.+ ++.+|+|+|+|+.+++.|+++     . .+++++.+|+.+..  ..++||+|++|
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~-----~-~~~~~~~~d~~~~~--~~~~fD~v~~~  102 (259)
T 2p35_A           32 ERVLNGYDLGCGPGNSTELLTDRY-GVNVITGIDSDDDMLEKAADR-----L-PNTNFGKADLATWK--PAQKADLLYAN  102 (259)
T ss_dssp             SCCSSEEEETCTTTHHHHHHHHHH-CTTSEEEEESCHHHHHHHHHH-----S-TTSEEEECCTTTCC--CSSCEEEEEEE
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHh-----C-CCcEEEECChhhcC--ccCCcCEEEEe
Confidence            356799999999999999999986 778999999999999999987     1 35899999997643  35789999996


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN  330 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~  330 (371)
                      ..+.              |-            .....+++.+.+.|+|||++++...
T Consensus       103 ~~l~--------------~~------------~~~~~~l~~~~~~L~pgG~l~~~~~  133 (259)
T 2p35_A          103 AVFQ--------------WV------------PDHLAVLSQLMDQLESGGVLAVQMP  133 (259)
T ss_dssp             SCGG--------------GS------------TTHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             Cchh--------------hC------------CCHHHHHHHHHHhcCCCeEEEEEeC
Confidence            4321              11            1234788999999999999999863

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.39  E-value=5.8e-12  Score=111.18  Aligned_cols=139  Identities=20%  Similarity=0.179  Sum_probs=93.1

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCC--------cEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE-EcCcccccc----
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSK--------GSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIR-QGSWFGKLK----  261 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~--------~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~-~gD~~~~l~----  261 (371)
                      ++.+|||+|||+|.+++.+++.+++.        .+|+|+|+|+.+           .+ .+++++ ++|+.+...    
T Consensus        22 ~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~-~~~~~~~~~d~~~~~~~~~~   89 (196)
T 2nyu_A           22 PGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PL-EGATFLCPADVTDPRTSQRI   89 (196)
T ss_dssp             TTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CC-TTCEEECSCCTTSHHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cC-CCCeEEEeccCCCHHHHHHH
Confidence            46799999999999999999986332        799999999832           22 248899 999765311    


Q ss_pred             ---cCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHH
Q 017476          262 ---DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFL  338 (371)
Q Consensus       262 ---~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v  338 (371)
                         ...++||+|++|++......  ...    .+.         ..+.....+++.+.++|+|||++++.+........+
T Consensus        90 ~~~~~~~~fD~V~~~~~~~~~~~--~~~----~~~---------~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~  154 (196)
T 2nyu_A           90 LEVLPGRRADVILSDMAPNATGF--RDL----DHD---------RLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRL  154 (196)
T ss_dssp             HHHSGGGCEEEEEECCCCCCCSC--HHH----HHH---------HHHHHHHHHHHHHHHHEEEEEEEEEEECCSGGGHHH
T ss_pred             HHhcCCCCCcEEEeCCCCCCCCC--ccc----CHH---------HHHHHHHHHHHHHHHHhcCCCEEEEEecCCccHHHH
Confidence               01247999999875432111  000    000         012334578999999999999999997554455666


Q ss_pred             HHHHhccccCCceeEEEEecCCCCce
Q 017476          339 KNYLENDSACSFCNVSIVSDFAGIQR  364 (371)
Q Consensus       339 ~~~l~~~~~~gf~~v~~~~Dl~g~~R  364 (371)
                      ...+..    .|..++++++..++.+
T Consensus       155 ~~~l~~----~f~~v~~~~~~~~~~~  176 (196)
T 2nyu_A          155 QRRLTE----EFQNVRIIKPEASRKE  176 (196)
T ss_dssp             HHHHHH----HEEEEEEECCC-----
T ss_pred             HHHHHH----HhcceEEECCcccCcc
Confidence            776664    3889999988776543

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.39  E-value=6.2e-13  Score=118.57  Aligned_cols=118  Identities=11%  Similarity=-0.053  Sum_probs=86.2

Q ss_pred             chHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 017476          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ  253 (371)
Q Consensus       174 p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~  253 (371)
                      |.-+.+.+.+...+      .++.+|||+|||+|.+++.++.. .|+++|+|+|+|+.|+++|++|+..+|..+++++  
T Consensus        34 p~ld~fY~~~~~~l------~~~~~VLDlGCG~GplAl~l~~~-~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--  104 (200)
T 3fzg_A           34 ATLNDFYTYVFGNI------KHVSSILDFGCGFNPLALYQWNE-NEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--  104 (200)
T ss_dssp             GGHHHHHHHHHHHS------CCCSEEEEETCTTHHHHHHHHCS-SCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--
T ss_pred             HhHHHHHHHHHhhc------CCCCeEEEecCCCCHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--
Confidence            34455566665555      23679999999999999999987 4888999999999999999999999999866777  


Q ss_pred             cCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476          254 GSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE  328 (371)
Q Consensus       254 gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle  328 (371)
                      .|..+..  ..++||+|+++      ..++.+ .+                   -+..+..+.+.|+|||.++--
T Consensus       105 ~d~~~~~--~~~~~DvVLa~------k~LHlL-~~-------------------~~~al~~v~~~L~pggvfISf  151 (200)
T 3fzg_A          105 LNKESDV--YKGTYDVVFLL------KMLPVL-KQ-------------------QDVNILDFLQLFHTQNFVISF  151 (200)
T ss_dssp             ECCHHHH--TTSEEEEEEEE------TCHHHH-HH-------------------TTCCHHHHHHTCEEEEEEEEE
T ss_pred             ecccccC--CCCCcChhhHh------hHHHhh-hh-------------------hHHHHHHHHHHhCCCCEEEEe
Confidence            6654442  24789999984      122222 11                   112233567899999987764

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.39  E-value=5.5e-12  Score=118.89  Aligned_cols=150  Identities=11%  Similarity=0.051  Sum_probs=98.2

Q ss_pred             HHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc--------------
Q 017476          178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY--------------  243 (371)
Q Consensus       178 ~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~--------------  243 (371)
                      ...+.+.+.+ .. ...++.+|||+|||+|..+..++..  ...+|+|+|+|+.|++.|++++...              
T Consensus        56 ~~~~~l~~~l-~~-~~~~~~~vLDiGcG~G~~~~l~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~  131 (289)
T 2g72_A           56 WKLRCLAQTF-AT-GEVSGRTLIDIGSGPTVYQLLSACS--HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHAC  131 (289)
T ss_dssp             HHHHHHHHHH-HT-SCSCCSEEEEETCTTCCGGGTTGGG--GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHh-CC-CCCCCCeEEEECCCcChHHHHhhcc--CCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHH
Confidence            3344444444 21 1235679999999999965544442  4569999999999999999865421              


Q ss_pred             ---CCC------------CcEEEEEcCcccccc-----cCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCC
Q 017476          244 ---GLQ------------DIIEIRQGSWFGKLK-----DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVD  303 (371)
Q Consensus       244 ---gl~------------~~v~~~~gD~~~~l~-----~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~d  303 (371)
                         +..            ..++++.+|+.+.++     ...++||+|++|--+              .|-        ..
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l--------------~~~--------~~  189 (289)
T 2g72_A          132 LIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCL--------------EAV--------SP  189 (289)
T ss_dssp             HHHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCH--------------HHH--------CS
T ss_pred             HhcCcccchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhh--------------hhh--------cC
Confidence               100            025688889876332     113569999996211              110        01


Q ss_pred             cHHHHHHHHHHHhcccccCcEEEEEE---------------CCcCcHHHHHHHHhccccCCceeEEEE
Q 017476          304 GLDYLLHLCNGTASMLKPGGFFAFET---------------NGEKQCKFLKNYLENDSACSFCNVSIV  356 (371)
Q Consensus       304 Gl~~~~~il~~a~~~LkpgG~lvle~---------------~~~~q~~~v~~~l~~~~~~gf~~v~~~  356 (371)
                      .+..+..+++.+.++|||||++++..               ......+.+.++|++   .||..+++.
T Consensus       190 ~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---aGf~~~~~~  254 (289)
T 2g72_A          190 DLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVR---SGYKVRDLR  254 (289)
T ss_dssp             SHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHH---TTEEEEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeeeeeccCCHHHHHHHHHH---cCCeEEEee
Confidence            13456789999999999999999852               012256788888886   789876654

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.39  E-value=1.9e-12  Score=117.60  Aligned_cols=111  Identities=21%  Similarity=0.179  Sum_probs=85.8

Q ss_pred             HHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcc
Q 017476          178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF  257 (371)
Q Consensus       178 ~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~  257 (371)
                      .+++.+++.+    ...++.+|||+|||+|.++..+++..   .+|+|+|+|+.+++.|++|+..++   +++++.+|+.
T Consensus        57 ~~~~~~~~~~----~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~  126 (231)
T 1vbf_A           57 NLGIFMLDEL----DLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGT  126 (231)
T ss_dssp             HHHHHHHHHT----TCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGG
T ss_pred             HHHHHHHHhc----CCCCCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCcc
Confidence            4455555554    23356799999999999999999973   799999999999999999987766   5999999997


Q ss_pred             cccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC
Q 017476          258 GKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG  331 (371)
Q Consensus       258 ~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~  331 (371)
                      +.+.. .++||+|+++.++.              |                  +.+.+.+.|+|||++++.++.
T Consensus       127 ~~~~~-~~~fD~v~~~~~~~--------------~------------------~~~~~~~~L~pgG~l~~~~~~  167 (231)
T 1vbf_A          127 LGYEE-EKPYDRVVVWATAP--------------T------------------LLCKPYEQLKEGGIMILPIGV  167 (231)
T ss_dssp             GCCGG-GCCEEEEEESSBBS--------------S------------------CCHHHHHTEEEEEEEEEEECS
T ss_pred             ccccc-CCCccEEEECCcHH--------------H------------------HHHHHHHHcCCCcEEEEEEcC
Confidence            74432 46899999975532              1                  112456799999999999853

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.39  E-value=3.9e-12  Score=113.02  Aligned_cols=100  Identities=28%  Similarity=0.233  Sum_probs=82.7

Q ss_pred             eEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCC
Q 017476          198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYI  277 (371)
Q Consensus       198 ~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi  277 (371)
                      +|||+|||+|.++..+++.   +.+|+|+|+|+.+++.|++++...+.  +++++++|+.+. +...++||+|+++..+.
T Consensus        32 ~vLdiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~-~~~~~~fD~v~~~~~~~  105 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLASL---GYEVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADF-DIVADAWEGIVSIFCHL  105 (202)
T ss_dssp             EEEECCCSCTHHHHHHHTT---TCEEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTB-SCCTTTCSEEEEECCCC
T ss_pred             CEEEECCCCCHhHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhc-CCCcCCccEEEEEhhcC
Confidence            9999999999999999874   46999999999999999999988876  499999998764 22247899999963221


Q ss_pred             CCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          278 PSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       278 ~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      +                          .+....+++.+.+.|+|||.+++..
T Consensus       106 ~--------------------------~~~~~~~l~~~~~~L~pgG~l~~~~  131 (202)
T 2kw5_A          106 P--------------------------SSLRQQLYPKVYQGLKPGGVFILEG  131 (202)
T ss_dssp             C--------------------------HHHHHHHHHHHHTTCCSSEEEEEEE
T ss_pred             C--------------------------HHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            0                          2345578999999999999999986

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.38  E-value=4.5e-12  Score=112.95  Aligned_cols=131  Identities=14%  Similarity=0.109  Sum_probs=92.6

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|.++..+++. +. .+|+|+|+|+.+++.|++++..   ..+++++++|+.+. +...++||+|++|+
T Consensus        42 ~~~~vLdiGcG~G~~~~~l~~~-~~-~~v~~~D~s~~~~~~a~~~~~~---~~~i~~~~~d~~~~-~~~~~~fD~v~~~~  115 (215)
T 2pxx_A           42 PEDRILVLGCGNSALSYELFLG-GF-PNVTSVDYSSVVVAAMQACYAH---VPQLRWETMDVRKL-DFPSASFDVVLEKG  115 (215)
T ss_dssp             TTCCEEEETCTTCSHHHHHHHT-TC-CCEEEEESCHHHHHHHHHHTTT---CTTCEEEECCTTSC-CSCSSCEEEEEEES
T ss_pred             CCCeEEEECCCCcHHHHHHHHc-CC-CcEEEEeCCHHHHHHHHHhccc---CCCcEEEEcchhcC-CCCCCcccEEEECc
Confidence            4569999999999999999986 23 3899999999999999998753   23599999998763 22246899999988


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhc
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLEN  344 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~  344 (371)
                      ++......        ...|.   .......+....+++.+.+.|+|||.+++...+  +......++..
T Consensus       116 ~~~~~~~~--------~~~~~---~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~--~~~~~~~~~~~  172 (215)
T 2pxx_A          116 TLDALLAG--------ERDPW---TVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSA--APHFRTRHYAQ  172 (215)
T ss_dssp             HHHHHTTT--------CSCTT---SCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESC--CHHHHHHHHCC
T ss_pred             chhhhccc--------ccccc---ccccchhHHHHHHHHHHHHhCcCCCEEEEEeCC--CcHHHHHHHhc
Confidence            75210000        00000   000112456678999999999999999998843  34445566653

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.38  E-value=1.4e-12  Score=121.21  Aligned_cols=110  Identities=18%  Similarity=0.230  Sum_probs=83.1

Q ss_pred             HHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcc
Q 017476          178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF  257 (371)
Q Consensus       178 ~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~  257 (371)
                      .+.+.+.+.+    ...++.+|||+|||+|.++..+++   ++.+|+|+|+|+.+++.|+++.       +++++++|+.
T Consensus        21 ~~~~~l~~~~----~~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~d~~   86 (261)
T 3ege_A           21 RIVNAIINLL----NLPKGSVIADIGAGTGGYSVALAN---QGLFVYAVEPSIVMRQQAVVHP-------QVEWFTGYAE   86 (261)
T ss_dssp             HHHHHHHHHH----CCCTTCEEEEETCTTSHHHHHHHT---TTCEEEEECSCHHHHHSSCCCT-------TEEEECCCTT
T ss_pred             HHHHHHHHHh----CCCCCCEEEEEcCcccHHHHHHHh---CCCEEEEEeCCHHHHHHHHhcc-------CCEEEECchh
Confidence            4666666665    233567999999999999999987   4689999999999999887654       4999999996


Q ss_pred             cccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          258 GKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       258 ~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      + ++...++||+|+++-.+              .|-            .....+++++.+.|| ||++++..
T Consensus        87 ~-~~~~~~~fD~v~~~~~l--------------~~~------------~~~~~~l~~~~~~Lk-gG~~~~~~  130 (261)
T 3ege_A           87 N-LALPDKSVDGVISILAI--------------HHF------------SHLEKSFQEMQRIIR-DGTIVLLT  130 (261)
T ss_dssp             S-CCSCTTCBSEEEEESCG--------------GGC------------SSHHHHHHHHHHHBC-SSCEEEEE
T ss_pred             h-CCCCCCCEeEEEEcchH--------------hhc------------cCHHHHHHHHHHHhC-CcEEEEEE
Confidence            5 33335789999996332              111            123478899999999 99666544

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.38  E-value=1.6e-12  Score=118.20  Aligned_cols=137  Identities=16%  Similarity=0.172  Sum_probs=96.6

Q ss_pred             cccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCC-----CcEEEEEeCCHH
Q 017476          157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS-----KGSIIAVDLNPL  231 (371)
Q Consensus       157 ~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~-----~~~V~gvDis~~  231 (371)
                      .|.+..+.+..+..+..|.   +...+++.+ .. ...++.+|||+|||+|.++..+++..+.     ..+|+++|+++.
T Consensus        51 ~y~d~~~~~~~~~~~~~p~---~~~~~~~~l-~~-~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~  125 (227)
T 1r18_A           51 PYMDAPQPIGGGVTISAPH---MHAFALEYL-RD-HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAE  125 (227)
T ss_dssp             TTBSSCEEEETTEEECCHH---HHHHHHHHT-TT-TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHH
T ss_pred             cccCCCcccCCCCccCChH---HHHHHHHHH-Hh-hCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHH
Confidence            4455555566665554443   233334433 10 1234679999999999999999987521     259999999999


Q ss_pred             HHHHHHHHHHHcCC----CCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHH
Q 017476          232 AAAVAAFNAQRYGL----QDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDY  307 (371)
Q Consensus       232 al~~A~~n~~~~gl----~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~  307 (371)
                      +++.|++|+...+.    .++++++.+|..+.++. .++||+|+++.+..                              
T Consensus       126 ~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~I~~~~~~~------------------------------  174 (227)
T 1r18_A          126 LVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP-NAPYNAIHVGAAAP------------------------------  174 (227)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG-GCSEEEEEECSCBS------------------------------
T ss_pred             HHHHHHHHHHhcCccccCCCceEEEECCcccCCCc-CCCccEEEECCchH------------------------------
Confidence            99999999987651    23599999999775443 36899999976531                              


Q ss_pred             HHHHHHHHhcccccCcEEEEEECC
Q 017476          308 LLHLCNGTASMLKPGGFFAFETNG  331 (371)
Q Consensus       308 ~~~il~~a~~~LkpgG~lvle~~~  331 (371)
                        .+.+.+.+.|||||++++.++.
T Consensus       175 --~~~~~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          175 --DTPTELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             --SCCHHHHHTEEEEEEEEEEESC
T ss_pred             --HHHHHHHHHhcCCCEEEEEEec
Confidence              1124556899999999999953

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.35  E-value=5.2e-12  Score=112.50  Aligned_cols=106  Identities=17%  Similarity=0.140  Sum_probs=81.6

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|.++..++..  .+.+|+|+|+|+.+++.|++++...+.  +++++++|+.+. +...++||+|+++-
T Consensus        23 ~~~~vLDiGcG~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~-~~~~~~fD~v~~~~   97 (209)
T 2p8j_A           23 LDKTVLDCGAGGDLPPLSIFVE--DGYKTYGIEISDLQLKKAENFSRENNF--KLNISKGDIRKL-PFKDESMSFVYSYG   97 (209)
T ss_dssp             SCSEEEEESCCSSSCTHHHHHH--TTCEEEEEECCHHHHHHHHHHHHHHTC--CCCEEECCTTSC-CSCTTCEEEEEECS
T ss_pred             CCCEEEEECCCCCHHHHHHHHh--CCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEECchhhC-CCCCCceeEEEEcC
Confidence            3579999999999985555544  467999999999999999999987763  489999999763 32347899999953


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      ..              .|-+          .+....+++.+.+.|+|||++++..
T Consensus        98 ~l--------------~~~~----------~~~~~~~l~~~~~~LkpgG~l~~~~  128 (209)
T 2p8j_A           98 TI--------------FHMR----------KNDVKEAIDEIKRVLKPGGLACINF  128 (209)
T ss_dssp             CG--------------GGSC----------HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hH--------------HhCC----------HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            21              1110          1345688999999999999999876

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.34  E-value=1.9e-12  Score=121.09  Aligned_cols=110  Identities=18%  Similarity=0.166  Sum_probs=81.8

Q ss_pred             HHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcc
Q 017476          178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF  257 (371)
Q Consensus       178 ~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~  257 (371)
                      .+++++.+..      ....+|||+|||+|.++..+++.   ..+|+|+|+|+.|++.|+++       .+++++++|+.
T Consensus        28 ~l~~~l~~~~------~~~~~vLDvGcGtG~~~~~l~~~---~~~v~gvD~s~~ml~~a~~~-------~~v~~~~~~~e   91 (257)
T 4hg2_A           28 ALFRWLGEVA------PARGDALDCGCGSGQASLGLAEF---FERVHAVDPGEAQIRQALRH-------PRVTYAVAPAE   91 (257)
T ss_dssp             HHHHHHHHHS------SCSSEEEEESCTTTTTHHHHHTT---CSEEEEEESCHHHHHTCCCC-------TTEEEEECCTT
T ss_pred             HHHHHHHHhc------CCCCCEEEEcCCCCHHHHHHHHh---CCEEEEEeCcHHhhhhhhhc-------CCceeehhhhh
Confidence            4566665544      12468999999999999999885   36999999999999887642       35999999985


Q ss_pred             cccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC
Q 017476          258 GKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG  331 (371)
Q Consensus       258 ~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~  331 (371)
                      + ++..+++||+|+++--+              .|-+             ...+++++.++|||||+|++...+
T Consensus        92 ~-~~~~~~sfD~v~~~~~~--------------h~~~-------------~~~~~~e~~rvLkpgG~l~~~~~~  137 (257)
T 4hg2_A           92 D-TGLPPASVDVAIAAQAM--------------HWFD-------------LDRFWAELRRVARPGAVFAAVTYG  137 (257)
T ss_dssp             C-CCCCSSCEEEEEECSCC--------------TTCC-------------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             h-hcccCCcccEEEEeeeh--------------hHhh-------------HHHHHHHHHHHcCCCCEEEEEECC
Confidence            5 34345899999994211              1110             226788899999999999887643

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.34  E-value=6.1e-12  Score=120.03  Aligned_cols=122  Identities=16%  Similarity=0.136  Sum_probs=89.6

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC------CCCcEEEEEcCccccc-----ccC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG------LQDIIEIRQGSWFGKL-----KDV  263 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~g------l~~~v~~~~gD~~~~l-----~~~  263 (371)
                      ++.+|||+|||+|.++..+++.  +..+|+|+|+|+.+++.|+++....+      ...+++++++|+.+..     ...
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~  111 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKG--RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP  111 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred             CCCEEEEECCCCcHHHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence            4569999999999999999884  56799999999999999999987652      2236999999997642     212


Q ss_pred             CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHh
Q 017476          264 EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLE  343 (371)
Q Consensus       264 ~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~  343 (371)
                      .++||+|++|-..              .|-        .........+++.+.+.|+|||.+++.+.+.   ..+.+.+.
T Consensus       112 ~~~fD~V~~~~~l--------------~~~--------~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~---~~l~~~~~  166 (313)
T 3bgv_A          112 QMCFDICSCQFVC--------------HYS--------FESYEQADMMLRNACERLSPGGYFIGTTPNS---FELIRRLE  166 (313)
T ss_dssp             TCCEEEEEEETCG--------------GGG--------GGSHHHHHHHHHHHHTTEEEEEEEEEEEECH---HHHHHHHT
T ss_pred             CCCEEEEEEecch--------------hhc--------cCCHHHHHHHHHHHHHHhCCCcEEEEecCCh---HHHHHHHH
Confidence            3589999996321              110        0013455689999999999999999998543   34444444

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.33  E-value=1.9e-11  Score=119.21  Aligned_cols=142  Identities=18%  Similarity=0.170  Sum_probs=106.0

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ...+|+|+|||+|.++..+++++ |+.+++..|+ +.+++.|++++...+ .++|+++.+|+++...   ..+|++++. 
T Consensus       179 ~~~~v~DvGgG~G~~~~~l~~~~-p~~~~~~~dl-p~v~~~a~~~~~~~~-~~rv~~~~gD~~~~~~---~~~D~~~~~-  251 (353)
T 4a6d_A          179 VFPLMCDLGGGAGALAKECMSLY-PGCKITVFDI-PEVVWTAKQHFSFQE-EEQIDFQEGDFFKDPL---PEADLYILA-  251 (353)
T ss_dssp             GCSEEEEETCTTSHHHHHHHHHC-SSCEEEEEEC-HHHHHHHHHHSCC---CCSEEEEESCTTTSCC---CCCSEEEEE-
T ss_pred             cCCeEEeeCCCCCHHHHHHHHhC-CCceeEeccC-HHHHHHHHHhhhhcc-cCceeeecCccccCCC---CCceEEEee-
Confidence            45699999999999999999996 8999999998 889999999876544 5689999999987522   457998872 


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC------------------------
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN------------------------  330 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~------------------------  330 (371)
                                   .+..+-|          -+....+++++.+.|+|||.+++...                        
T Consensus       252 -------------~vlh~~~----------d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~  308 (353)
T 4a6d_A          252 -------------RVLHDWA----------DGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTE  308 (353)
T ss_dssp             -------------SSGGGSC----------HHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSS
T ss_pred             -------------eecccCC----------HHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCC
Confidence                         1211111          13345799999999999998877431                        


Q ss_pred             -CcCcHHHHHHHHhccccCCceeEEEEecCCCCceEEEEEe
Q 017476          331 -GEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFR  370 (371)
Q Consensus       331 -~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~~  370 (371)
                       ..+..++.++++++   .||+.+++.+. .+...+++|+|
T Consensus       309 g~ert~~e~~~ll~~---AGf~~v~v~~~-~~~~~~i~ArK  345 (353)
T 4a6d_A          309 GQERTPTHYHMLLSS---AGFRDFQFKKT-GAIYDAILARK  345 (353)
T ss_dssp             CCCCCHHHHHHHHHH---HTCEEEEEECC-SSSCEEEEEEC
T ss_pred             CcCCCHHHHHHHHHH---CCCceEEEEEc-CCceEEEEEEe
Confidence             11234567777875   78999999874 55566888887

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.33  E-value=3.3e-12  Score=120.59  Aligned_cols=109  Identities=19%  Similarity=0.247  Sum_probs=80.1

Q ss_pred             CCeEEEECCcccH----HHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHH--------------H---------cC-
Q 017476          196 DGFWVDLGTGSGA----IAIGIARVLGS---KGSIIAVDLNPLAAAVAAFNAQ--------------R---------YG-  244 (371)
Q Consensus       196 ~~~VLDlG~GsG~----~al~la~~~~~---~~~V~gvDis~~al~~A~~n~~--------------~---------~g-  244 (371)
                      +.+|+|+|||||.    +++.+++.++.   +.+|+|+|+|+.|++.|++++.              +         .| 
T Consensus       106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~  185 (274)
T 1af7_A          106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL  185 (274)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred             CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence            4589999999998    67777776532   4699999999999999999851              0         00 


Q ss_pred             ------CCCcEEEEEcCcccc-cccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhc
Q 017476          245 ------LQDIIEIRQGSWFGK-LKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTAS  317 (371)
Q Consensus       245 ------l~~~v~~~~gD~~~~-l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~  317 (371)
                            +.++|.|.++|+.+. .+ ..++||+|+|.      +.+.++++                  +..+.+++.+.+
T Consensus       186 ~~v~~~lr~~V~F~~~dl~~~~~~-~~~~fDlI~cr------nvliyf~~------------------~~~~~vl~~~~~  240 (274)
T 1af7_A          186 VRVRQELANYVEFSSVNLLEKQYN-VPGPFDAIFCR------NVMIYFDK------------------TTQEDILRRFVP  240 (274)
T ss_dssp             EEECHHHHTTEEEEECCTTCSSCC-CCCCEEEEEEC------SSGGGSCH------------------HHHHHHHHHHGG
T ss_pred             eeechhhcccCeEEecccCCCCCC-cCCCeeEEEEC------CchHhCCH------------------HHHHHHHHHHHH
Confidence                  013599999999873 22 13689999992      12222221                  224589999999


Q ss_pred             ccccCcEEEEEE
Q 017476          318 MLKPGGFFAFET  329 (371)
Q Consensus       318 ~LkpgG~lvle~  329 (371)
                      .|+|||+|++++
T Consensus       241 ~L~pgG~L~lg~  252 (274)
T 1af7_A          241 LLKPDGLLFAGH  252 (274)
T ss_dssp             GEEEEEEEEECT
T ss_pred             HhCCCcEEEEEe
Confidence            999999999987

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.33  E-value=1e-11  Score=114.41  Aligned_cols=103  Identities=19%  Similarity=0.269  Sum_probs=81.0

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|.++..+++.   +.+|+|+|+|+.+++.|++++ . +...+++++.+|+.+ ++...++||+|+++-
T Consensus        39 ~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~-~-~~~~~~~~~~~d~~~-~~~~~~~fD~v~~~~  112 (263)
T 2yqz_A           39 EEPVFLELGVGTGRIALPLIAR---GYRYIALDADAAMLEVFRQKI-A-GVDRKVQVVQADARA-IPLPDESVHGVIVVH  112 (263)
T ss_dssp             SCCEEEEETCTTSTTHHHHHTT---TCEEEEEESCHHHHHHHHHHT-T-TSCTTEEEEESCTTS-CCSCTTCEEEEEEES
T ss_pred             CCCEEEEeCCcCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHh-h-ccCCceEEEEccccc-CCCCCCCeeEEEECC
Confidence            4679999999999999999884   479999999999999999998 2 333469999999965 333357899999963


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      .+              .|-+            ....+++.+.+.|+|||++++..
T Consensus       113 ~l--------------~~~~------------~~~~~l~~~~~~L~pgG~l~~~~  141 (263)
T 2yqz_A          113 LW--------------HLVP------------DWPKVLAEAIRVLKPGGALLEGW  141 (263)
T ss_dssp             CG--------------GGCT------------THHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ch--------------hhcC------------CHHHHHHHHHHHCCCCcEEEEEe
Confidence            32              1111            13478888999999999999874

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.33  E-value=1.8e-11  Score=118.87  Aligned_cols=141  Identities=11%  Similarity=0.086  Sum_probs=101.4

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      .++.+|||+|||+|.++..+++.+ ++.+++++|+ +.++.  ++++...+..++++++.+|++++++    .||+|+++
T Consensus       183 ~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~~~p----~~D~v~~~  254 (348)
T 3lst_A          183 PATGTVADVGGGRGGFLLTVLREH-PGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLREVP----HADVHVLK  254 (348)
T ss_dssp             CSSEEEEEETCTTSHHHHHHHHHC-TTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTTCCC----CCSEEEEE
T ss_pred             cCCceEEEECCccCHHHHHHHHHC-CCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCCCCC----CCcEEEEe
Confidence            356799999999999999999986 8889999999 44544  4444445666789999999985443    79999984


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC----------------------
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG----------------------  331 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~----------------------  331 (371)
                      --              ..+-+          -.....+++++.+.|||||++++....                      
T Consensus       255 ~v--------------lh~~~----------d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~  310 (348)
T 3lst_A          255 RI--------------LHNWG----------DEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAART  310 (348)
T ss_dssp             SC--------------GGGSC----------HHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTS
T ss_pred             hh--------------ccCCC----------HHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCC
Confidence            21              11111          122357899999999999999885420                      


Q ss_pred             --cCcHHHHHHHHhccccCCceeEEEEecCCCCceEEEEEe
Q 017476          332 --EKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFR  370 (371)
Q Consensus       332 --~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~~  370 (371)
                        ....+++.+++++   .||..+++.. ..+..-++.+++
T Consensus       311 ~~~~t~~e~~~ll~~---aGf~~~~~~~-~~~~~~vie~~p  347 (348)
T 3lst_A          311 GQERTAAELEPLFTA---AGLRLDRVVG-TSSVMSIAVGVP  347 (348)
T ss_dssp             CCCCBHHHHHHHHHH---TTEEEEEEEE-CSSSCEEEEEEE
T ss_pred             CcCCCHHHHHHHHHH---CCCceEEEEE-CCCCcEEEEEEe
Confidence              1245667788875   7899999988 445555555543

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=99.32  E-value=1e-11  Score=118.13  Aligned_cols=140  Identities=15%  Similarity=0.156  Sum_probs=95.1

Q ss_pred             CCCCeEEEECCcc------cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEE-EEcCcccccccCCCc
Q 017476          194 LRDGFWVDLGTGS------GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEI-RQGSWFGKLKDVEGK  266 (371)
Q Consensus       194 ~~~~~VLDlG~Gs------G~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~-~~gD~~~~l~~~~~~  266 (371)
                      .++.+|||+|||+      |.  ..+++.++++++|+|+|+|+.             ++ ++++ +++|+.+...  .++
T Consensus        62 ~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v~-~v~~~i~gD~~~~~~--~~~  123 (290)
T 2xyq_A           62 PYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------VS-DADSTLIGDCATVHT--ANK  123 (290)
T ss_dssp             CTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------BC-SSSEEEESCGGGCCC--SSC
T ss_pred             CCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------CC-CCEEEEECccccCCc--cCc
Confidence            4567999999955      76  445666544689999999997             12 4788 9999976422  368


Q ss_pred             eeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccc
Q 017476          267 LSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDS  346 (371)
Q Consensus       267 fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~  346 (371)
                      ||+|+||++.......        .       ....++++.+..+++.+.++|||||++++.+......+.+.+++++  
T Consensus       124 fD~Vvsn~~~~~~g~~--------~-------~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~~--  186 (290)
T 2xyq_A          124 WDLIISDMYDPRTKHV--------T-------KENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGH--  186 (290)
T ss_dssp             EEEEEECCCCCC---C--------C-------SCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTT--
T ss_pred             ccEEEEcCCccccccc--------c-------ccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHHH--
Confidence            9999999642111100        0       0112345667789999999999999999977444455678888875  


Q ss_pred             cCCceeEEEE-ecCCCCceEEEEE
Q 017476          347 ACSFCNVSIV-SDFAGIQRFVTGF  369 (371)
Q Consensus       347 ~~gf~~v~~~-~Dl~g~~R~~~a~  369 (371)
                       .||..+++. ......+.|++++
T Consensus       187 -~GF~~v~~~asr~~s~e~~lv~~  209 (290)
T 2xyq_A          187 -FSWWTAFVTNVNASSSEAFLIGA  209 (290)
T ss_dssp             -EEEEEEEEEGGGTTSSCEEEEEE
T ss_pred             -cCCcEEEEEEcCCCchheEEecC
Confidence             568888876 2233345666554

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.32  E-value=2.1e-12  Score=128.11  Aligned_cols=140  Identities=19%  Similarity=0.265  Sum_probs=96.8

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      .++.+|||+|||+|.++..+++.   +.+|+|+|+|+.+++.|+++    ++.....+...+..+.++...++||+|+++
T Consensus       106 ~~~~~VLDiGcG~G~~~~~l~~~---g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~~~~~fD~I~~~  178 (416)
T 4e2x_A          106 GPDPFIVEIGCNDGIMLRTIQEA---GVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVRRTEGPANVIYAA  178 (416)
T ss_dssp             SSSCEEEEETCTTTTTHHHHHHT---TCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHHHHHCCEEEEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHc---CCcEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhcccCCCCEEEEEEC
Confidence            35679999999999999999984   46999999999999999876    433211112112112222224789999995


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC-------------------cCc
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG-------------------EKQ  334 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~-------------------~~q  334 (371)
                      -              +..|-+            ....+++.+.+.|||||+++++...                   ...
T Consensus       179 ~--------------vl~h~~------------d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s  232 (416)
T 4e2x_A          179 N--------------TLCHIP------------YVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFS  232 (416)
T ss_dssp             S--------------CGGGCT------------THHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECC
T ss_pred             C--------------hHHhcC------------CHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCC
Confidence            2              223322            2457899999999999999998632                   123


Q ss_pred             HHHHHHHHhccccCCceeEEEEe--cCCCCceEEEEE
Q 017476          335 CKFLKNYLENDSACSFCNVSIVS--DFAGIQRFVTGF  369 (371)
Q Consensus       335 ~~~v~~~l~~~~~~gf~~v~~~~--Dl~g~~R~~~a~  369 (371)
                      .+.+.+++++   .||..+++..  ...|.-|+..++
T Consensus       233 ~~~l~~ll~~---aGf~~~~~~~~~~~~g~l~~~~~~  266 (416)
T 4e2x_A          233 ATSVQGMAQR---CGFELVDVQRLPVHGGEVRYTLAR  266 (416)
T ss_dssp             HHHHHHHHHH---TTEEEEEEEEECGGGSEEEEEEEE
T ss_pred             HHHHHHHHHH---cCCEEEEEEEccCCCCEEEEEEEe
Confidence            4678888886   7898776654  556777766554

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.31  E-value=5.8e-12  Score=118.10  Aligned_cols=107  Identities=11%  Similarity=0.051  Sum_probs=75.1

Q ss_pred             CCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEE
Q 017476          193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS  272 (371)
Q Consensus       193 ~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvs  272 (371)
                      ..++.+|||+|||+|.+++.+++.   +.+|+|+|+|+.|++.|++|+.....  ...+...+.. ......++||+|++
T Consensus        43 l~~g~~VLDlGcGtG~~a~~La~~---g~~V~gvD~S~~ml~~Ar~~~~~~~v--~~~~~~~~~~-~~~~~~~~fD~Vv~  116 (261)
T 3iv6_A           43 IVPGSTVAVIGASTRFLIEKALER---GASVTVFDFSQRMCDDLAEALADRCV--TIDLLDITAE-IPKELAGHFDFVLN  116 (261)
T ss_dssp             CCTTCEEEEECTTCHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTSSSCC--EEEECCTTSC-CCGGGTTCCSEEEE
T ss_pred             CCCcCEEEEEeCcchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHhccc--eeeeeecccc-cccccCCCccEEEE
Confidence            345679999999999999999985   47999999999999999999754411  1222222220 01122468999999


Q ss_pred             cCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC
Q 017476          273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN  330 (371)
Q Consensus       273 NPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~  330 (371)
                      |..+.      ++.                  .+..+.++..+.+.| |||.+++.+.
T Consensus       117 ~~~l~------~~~------------------~~~~~~~l~~l~~lL-PGG~l~lS~~  149 (261)
T 3iv6_A          117 DRLIN------RFT------------------TEEARRACLGMLSLV-GSGTVRASVK  149 (261)
T ss_dssp             ESCGG------GSC------------------HHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred             hhhhH------hCC------------------HHHHHHHHHHHHHhC-cCcEEEEEec
Confidence            75431      111                  123456788888999 9999999874

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=99.30  E-value=1e-11  Score=123.37  Aligned_cols=80  Identities=19%  Similarity=0.087  Sum_probs=68.7

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc--CCCCcEEEEEcCcccccccC-CCceeEEEE
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY--GLQDIIEIRQGSWFGKLKDV-EGKLSGVVS  272 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~--gl~~~v~~~~gD~~~~l~~~-~~~fDlIvs  272 (371)
                      +.+|||+|||+|..++.+++.   +.+|+|||+|+.+++.|++|++.+  |+ ++++++++|+.+.+... .++||+|++
T Consensus        94 g~~VLDLgcG~G~~al~LA~~---g~~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~~~~~~fDvV~l  169 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSK---ASQGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEYLPLIKTFHPDYIYV  169 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTT---CSEEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred             CCEEEEeCCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHhhhhccCCCceEEEE
Confidence            679999999999999999884   479999999999999999999998  88 57999999998764431 247999999


Q ss_pred             cCCCCCC
Q 017476          273 NPPYIPS  279 (371)
Q Consensus       273 NPPYi~~  279 (371)
                      ||||...
T Consensus       170 DPPrr~~  176 (410)
T 3ll7_A          170 DPARRSG  176 (410)
T ss_dssp             CCEEC--
T ss_pred             CCCCcCC
Confidence            9999763

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.28  E-value=1e-11  Score=118.55  Aligned_cols=89  Identities=15%  Similarity=0.256  Sum_probs=68.3

Q ss_pred             HHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccc
Q 017476          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG  258 (371)
Q Consensus       179 lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~  258 (371)
                      +++.+++.+    ...++.+|||+|||+|.++..+++.   ..+|+|+|+|+.+++.|++|+..+++. +++++++|+.+
T Consensus        30 i~~~i~~~~----~~~~~~~VLDiG~G~G~lt~~La~~---~~~v~~vDi~~~~~~~a~~~~~~~~~~-~v~~~~~D~~~  101 (299)
T 2h1r_A           30 ILDKIIYAA----KIKSSDIVLEIGCGTGNLTVKLLPL---AKKVITIDIDSRMISEVKKRCLYEGYN-NLEVYEGDAIK  101 (299)
T ss_dssp             HHHHHHHHH----CCCTTCEEEEECCTTSTTHHHHTTT---SSEEEEECSCHHHHHHHHHHHHHTTCC-CEEC----CCS
T ss_pred             HHHHHHHhc----CCCCcCEEEEEcCcCcHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEECchhh
Confidence            344555544    2335679999999999999999884   469999999999999999999888774 59999999976


Q ss_pred             ccccCCCceeEEEEcCCCCC
Q 017476          259 KLKDVEGKLSGVVSNPPYIP  278 (371)
Q Consensus       259 ~l~~~~~~fDlIvsNPPYi~  278 (371)
                      ..   .++||+|++||||..
T Consensus       102 ~~---~~~~D~Vv~n~py~~  118 (299)
T 2h1r_A          102 TV---FPKFDVCTANIPYKI  118 (299)
T ss_dssp             SC---CCCCSEEEEECCGGG
T ss_pred             CC---cccCCEEEEcCCccc
Confidence            42   248999999999963

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.28  E-value=3e-11  Score=109.05  Aligned_cols=123  Identities=16%  Similarity=0.171  Sum_probs=93.1

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCC
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP  275 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPP  275 (371)
                      +.+|||+|||+|.++..+++    .   +|+|+|+.+++.|+++        +++++++|+.+ ++...++||+|+++-.
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~----~---~~vD~s~~~~~~a~~~--------~~~~~~~d~~~-~~~~~~~fD~v~~~~~  111 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKI----K---IGVEPSERMAEIARKR--------GVFVLKGTAEN-LPLKDESFDFALMVTT  111 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTC----C---EEEESCHHHHHHHHHT--------TCEEEECBTTB-CCSCTTCEEEEEEESC
T ss_pred             CCcEEEeCCCCCHHHHHHHH----H---hccCCCHHHHHHHHhc--------CCEEEEccccc-CCCCCCCeeEEEEcch
Confidence            56999999999999887754    1   9999999999999987        37899999865 3333468999999532


Q ss_pred             CCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCc-----------------------
Q 017476          276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGE-----------------------  332 (371)
Q Consensus       276 Yi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~-----------------------  332 (371)
                      +              .|-+            ....+++.+.+.|+|||.+++.....                       
T Consensus       112 l--------------~~~~------------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (219)
T 1vlm_A          112 I--------------CFVD------------DPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARF  165 (219)
T ss_dssp             G--------------GGSS------------CHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCC
T ss_pred             H--------------hhcc------------CHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhccccc
Confidence            1              1211            12478888899999999999975321                       


Q ss_pred             CcHHHHHHHHhccccCCceeEEEEecCCCCc
Q 017476          333 KQCKFLKNYLENDSACSFCNVSIVSDFAGIQ  363 (371)
Q Consensus       333 ~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~  363 (371)
                      ...+.+.+++++   .||..+++..+..+.+
T Consensus       166 ~~~~~l~~~l~~---~Gf~~~~~~~~~~~~p  193 (219)
T 1vlm_A          166 FSTEELMDLMRK---AGFEEFKVVQTLFKHP  193 (219)
T ss_dssp             CCHHHHHHHHHH---TTCEEEEEEEECCSCG
T ss_pred             CCHHHHHHHHHH---CCCeEEEEecccCCCC
Confidence            245677888885   7899999888876654

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.28  E-value=3.5e-11  Score=127.30  Aligned_cols=132  Identities=21%  Similarity=0.231  Sum_probs=96.3

Q ss_pred             CCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc---
Q 017476          167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY---  243 (371)
Q Consensus       167 ~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~---  243 (371)
                      .+.+.| +.++..++.+++.+ ..   .++.+|||+|||+|.++..+++..++..+|+|||+|+.+++.|++++...   
T Consensus       698 ~gtFsP-PL~eqRle~LLelL-~~---~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnA  772 (950)
T 3htx_A          698 AAFFKP-PLSKQRVEYALKHI-RE---SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNK  772 (950)
T ss_dssp             CCCSSS-CHHHHHHHHHHHHH-HH---SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTT
T ss_pred             hCcCCc-hHHHHHHHHHHHHh-cc---cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccch
Confidence            344444 66777777777776 21   24679999999999999999986324479999999999999999977643   


Q ss_pred             ---CCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccc
Q 017476          244 ---GLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLK  320 (371)
Q Consensus       244 ---gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~Lk  320 (371)
                         ++. +++++++|+.+. +...+.||+|+++-              +..|-+.          .....+++.+.+.||
T Consensus       773 kr~gl~-nVefiqGDa~dL-p~~d~sFDlVV~~e--------------VLeHL~d----------p~l~~~L~eI~RvLK  826 (950)
T 3htx_A          773 EACNVK-SATLYDGSILEF-DSRLHDVDIGTCLE--------------VIEHMEE----------DQACEFGEKVLSLFH  826 (950)
T ss_dssp             TCSSCS-EEEEEESCTTSC-CTTSCSCCEEEEES--------------CGGGSCH----------HHHHHHHHHHHHTTC
T ss_pred             hhcCCC-ceEEEECchHhC-CcccCCeeEEEEeC--------------chhhCCh----------HHHHHHHHHHHHHcC
Confidence               443 699999999763 33357899999942              2222221          123368889999999


Q ss_pred             cCcEEEEEEC
Q 017476          321 PGGFFAFETN  330 (371)
Q Consensus       321 pgG~lvle~~  330 (371)
                      || .+++.+.
T Consensus       827 PG-~LIISTP  835 (950)
T 3htx_A          827 PK-LLIVSTP  835 (950)
T ss_dssp             CS-EEEEEEC
T ss_pred             CC-EEEEEec
Confidence            99 7777663

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.26  E-value=3.6e-11  Score=108.02  Aligned_cols=123  Identities=13%  Similarity=0.064  Sum_probs=91.8

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccc-cccCCCceeEEEEc
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK-LKDVEGKLSGVVSN  273 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~-l~~~~~~fDlIvsN  273 (371)
                      ++.+|||+|||+|.++..+++.   +.+++|+|+|+.+++.|+++.        .+++.+|+.+. .+...++||+|+++
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~~~~~~fD~v~~~  100 (230)
T 3cc8_A           32 EWKEVLDIGCSSGALGAAIKEN---GTRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMPYEEEQFDCVIFG  100 (230)
T ss_dssp             TCSEEEEETCTTSHHHHHHHTT---TCEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCCSCTTCEEEEEEE
T ss_pred             CCCcEEEeCCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCCCCCCccCEEEEC
Confidence            4679999999999999999885   379999999999999988763        36889998653 22224789999995


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCc---------------------
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGE---------------------  332 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~---------------------  332 (371)
                      -..              .|-+            ....+++.+.+.|+|||++++.....                     
T Consensus       101 ~~l--------------~~~~------------~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (230)
T 3cc8_A          101 DVL--------------EHLF------------DPWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGL  154 (230)
T ss_dssp             SCG--------------GGSS------------CHHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSST
T ss_pred             Chh--------------hhcC------------CHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCC
Confidence            321              2211            12378899999999999999976321                     


Q ss_pred             --------CcHHHHHHHHhccccCCceeEEEEe
Q 017476          333 --------KQCKFLKNYLENDSACSFCNVSIVS  357 (371)
Q Consensus       333 --------~q~~~v~~~l~~~~~~gf~~v~~~~  357 (371)
                              ...+.+.+++++   .||..+++..
T Consensus       155 ~~~~~~~~~~~~~~~~~l~~---~Gf~~~~~~~  184 (230)
T 3cc8_A          155 LDKTHIRFFTFNEMLRMFLK---AGYSISKVDR  184 (230)
T ss_dssp             TBTTCCCCCCHHHHHHHHHH---TTEEEEEEEE
T ss_pred             CCcceEEEecHHHHHHHHHH---cCCeEEEEEe
Confidence                    135677788875   7898776654

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.26  E-value=1.6e-11  Score=117.40  Aligned_cols=111  Identities=13%  Similarity=-0.006  Sum_probs=77.7

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC-----cEEEEEcCcccc-----cc--c
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQD-----IIEIRQGSWFGK-----LK--D  262 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~-----~v~~~~gD~~~~-----l~--~  262 (371)
                      ++.+|||+|||+|..+..+++.  ...+|+|+|+|+.+++.|+++....+...     ++++.++|+...     +.  .
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~  125 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYG--EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF  125 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred             CCCeEEEEecCCcHhHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc
Confidence            3579999999999876666653  45799999999999999999887665431     267888877321     11  1


Q ss_pred             CCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC
Q 017476          263 VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN  330 (371)
Q Consensus       263 ~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~  330 (371)
                      ..++||+|+|.-              +..|-    +. .    .....+++.+.++|||||++++.+.
T Consensus       126 ~~~~FD~V~~~~--------------~lhy~----~~-~----~~~~~~l~~~~r~LkpGG~~i~~~~  170 (302)
T 2vdw_A          126 YFGKFNIIDWQF--------------AIHYS----FH-P----RHYATVMNNLSELTASGGKVLITTM  170 (302)
T ss_dssp             CSSCEEEEEEES--------------CGGGT----CS-T----TTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCCCeeEEEECc--------------hHHHh----CC-H----HHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            247899999831              11110    00 0    0124789999999999999999884

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.25  E-value=1.6e-11  Score=114.16  Aligned_cols=104  Identities=21%  Similarity=0.273  Sum_probs=81.2

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|.++..+++.+ ++.+|+|+|+|+.+++.|+++.      .++.++.+|+.+ ++...++||+|+++.
T Consensus        85 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~-~~~~~~~fD~v~~~~  156 (269)
T 1p91_A           85 KATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHR-LPFSDTSMDAIIRIY  156 (269)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTS-CSBCTTCEEEEEEES
T ss_pred             CCCEEEEECCCCCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcchhh-CCCCCCceeEEEEeC
Confidence            46799999999999999999975 6789999999999999998874      248899999865 333347899999953


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHH
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLK  339 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~  339 (371)
                      .                  +               ..++.+.+.|+|||++++..++......+.
T Consensus       157 ~------------------~---------------~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~  188 (269)
T 1p91_A          157 A------------------P---------------CKAEELARVVKPGGWVITATPGPRHLMELK  188 (269)
T ss_dssp             C------------------C---------------CCHHHHHHHEEEEEEEEEEEECTTTTHHHH
T ss_pred             C------------------h---------------hhHHHHHHhcCCCcEEEEEEcCHHHHHHHH
Confidence            2                  0               135667789999999999886655444444

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=99.25  E-value=3.7e-11  Score=123.35  Aligned_cols=161  Identities=16%  Similarity=0.211  Sum_probs=102.3

Q ss_pred             cccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCC------------CcEEEEEeCCHHHHHHH
Q 017476          169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS------------KGSIIAVDLNPLAAAVA  236 (371)
Q Consensus       169 vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~------------~~~V~gvDis~~al~~A  236 (371)
                      .|.|++.++.+++.+.        ...+.+|+|.+||||.+.+.+.+.+..            ...++|+|+++.+..+|
T Consensus       199 fyTP~~Vv~lmv~l~~--------p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la  270 (530)
T 3ufb_A          199 FYTPRPVVRFMVEVMD--------PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLV  270 (530)
T ss_dssp             CCCCHHHHHHHHHHHC--------CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHH
T ss_pred             ECCcHHHHHHHHHhhc--------cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHH
Confidence            5679988887777542        224568999999999999988765411            24699999999999999


Q ss_pred             HHHHHHcCCCCcEEEEEcCccccc-cc--CCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHH
Q 017476          237 AFNAQRYGLQDIIEIRQGSWFGKL-KD--VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCN  313 (371)
Q Consensus       237 ~~n~~~~gl~~~v~~~~gD~~~~l-~~--~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~  313 (371)
                      +.|+..+|... ..+..+|.+... ..  ...+||+||+||||......     +....-+.. ...+...+.++.+++.
T Consensus       271 ~mNl~lhg~~~-~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~-----~~~~~~~~~-~~~~~~~~~Fl~~~l~  343 (530)
T 3ufb_A          271 QMNLLLHGLEY-PRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEK-----GILGNFPED-MQTAETAMLFLQLIMR  343 (530)
T ss_dssp             HHHHHHHTCSC-CEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCH-----HHHTTSCGG-GCCCBHHHHHHHHHHH
T ss_pred             HHHHHhcCCcc-ccccccccccCchhhhcccccceEEEecCCCCccccc-----cccccCchh-cccchhHHHHHHHHHH
Confidence            99999999864 678888876531 11  12479999999999643221     111111110 0111112333333333


Q ss_pred             HHh---cccccCcEEEEEECC-----cCcHHHHHHHHhc
Q 017476          314 GTA---SMLKPGGFFAFETNG-----EKQCKFLKNYLEN  344 (371)
Q Consensus       314 ~a~---~~LkpgG~lvle~~~-----~~q~~~v~~~l~~  344 (371)
                      ...   ..|++||++++.++.     ......+++.|.+
T Consensus       344 ~Lk~~~~~l~~gGr~avVlP~g~Lf~~~~~~~iRk~Lle  382 (530)
T 3ufb_A          344 KLKRPGHGSDNGGRAAVVVPNGTLFSDGISARIKEELLK  382 (530)
T ss_dssp             HBCCTTSSSSSCCEEEEEEEHHHHHCCTHHHHHHHHHHH
T ss_pred             HhhhhhhccCCCceEEEEecchhhhccchHHHHHHHHhh
Confidence            221   234589999998852     1223467777764

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.24  E-value=2e-11  Score=111.79  Aligned_cols=104  Identities=15%  Similarity=0.110  Sum_probs=77.7

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccC----CCceeEE
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV----EGKLSGV  270 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~----~~~fDlI  270 (371)
                      ++.+|||+|||+|.++..+++..   .+|+|+|+|+.+++.|++++.    ..+++++++|+.+.....    ...||+|
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~~---~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~d~v  128 (245)
T 3ggd_A           56 PELPLIDFACGNGTQTKFLSQFF---PRVIGLDVSKSALEIAAKENT----AANISYRLLDGLVPEQAAQIHSEIGDANI  128 (245)
T ss_dssp             TTSCEEEETCTTSHHHHHHHHHS---SCEEEEESCHHHHHHHHHHSC----CTTEEEEECCTTCHHHHHHHHHHHCSCEE
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhC---CCEEEEECCHHHHHHHHHhCc----ccCceEEECcccccccccccccccCccEE
Confidence            45789999999999999999974   389999999999999999862    235999999997632110    1248999


Q ss_pred             EEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       271 vsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      +++-.+.              |-+.          +....+++.+.+.|||||++++..
T Consensus       129 ~~~~~~~--------------~~~~----------~~~~~~l~~~~~~LkpgG~l~i~~  163 (245)
T 3ggd_A          129 YMRTGFH--------------HIPV----------EKRELLGQSLRILLGKQGAMYLIE  163 (245)
T ss_dssp             EEESSST--------------TSCG----------GGHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             EEcchhh--------------cCCH----------HHHHHHHHHHHHHcCCCCEEEEEe
Confidence            9964332              1110          123478889999999999866654

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.24  E-value=7.8e-11  Score=105.24  Aligned_cols=100  Identities=13%  Similarity=0.044  Sum_probs=77.0

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|.++..+     ...+|+|+|+|+.+++.|+++.      .+++++++|+.+ ++...++||+|+++-
T Consensus        36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~-~~~~~~~fD~v~~~~  103 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRA------PEATWVRAWGEA-LPFPGESFDVVLLFT  103 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHC------TTSEEECCCTTS-CCSCSSCEEEEEEES
T ss_pred             CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhC------CCcEEEEccccc-CCCCCCcEEEEEEcC
Confidence            5679999999999988766     1238999999999999999886      348999999865 333346899999963


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCc
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGE  332 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~  332 (371)
                      ...              |-+            ....+++.+.+.|||||.+++...+.
T Consensus       104 ~l~--------------~~~------------~~~~~l~~~~~~L~pgG~l~i~~~~~  135 (211)
T 2gs9_A          104 TLE--------------FVE------------DVERVLLEARRVLRPGGALVVGVLEA  135 (211)
T ss_dssp             CTT--------------TCS------------CHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             hhh--------------hcC------------CHHHHHHHHHHHcCCCCEEEEEecCC
Confidence            321              111            13478889999999999999987443

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.24  E-value=2.5e-11  Score=113.77  Aligned_cols=137  Identities=11%  Similarity=-0.043  Sum_probs=98.8

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc--CC-CCcEEEEEcCcccccccCCCceeEEE
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY--GL-QDIIEIRQGSWFGKLKDVEGKLSGVV  271 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~--gl-~~~v~~~~gD~~~~l~~~~~~fDlIv  271 (371)
                      .+.+|||+|||+|.++..+++.  + .+|++||+++.+++.|++++...  ++ .++++++.+|..+.+    ++||+|+
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~--~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~----~~fD~Ii  144 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKY--D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI----KKYDLIF  144 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTS--S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC----CCEEEEE
T ss_pred             CCCEEEEEeCCcCHHHHHHHhC--C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH----hhCCEEE
Confidence            4579999999999999999885  5 89999999999999999876321  12 347999999997754    6899999


Q ss_pred             EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCc-CcHHHHHHHHhccccCCc
Q 017476          272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGE-KQCKFLKNYLENDSACSF  350 (371)
Q Consensus       272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~-~q~~~v~~~l~~~~~~gf  350 (371)
                      +|.+                 +|          .    .+++.+.+.|+|||++++..+.. ...+.+..+.+.. ..-|
T Consensus       145 ~d~~-----------------dp----------~----~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l-~~~F  192 (262)
T 2cmg_A          145 CLQE-----------------PD----------I----HRIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNM-GGVF  192 (262)
T ss_dssp             ESSC-----------------CC----------H----HHHHHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHH-HTTC
T ss_pred             ECCC-----------------Ch----------H----HHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHH-HHhC
Confidence            9732                 01          0    26778899999999999976332 2323333333322 1348


Q ss_pred             eeEEEEecC---CCCceEEEEEe
Q 017476          351 CNVSIVSDF---AGIQRFVTGFR  370 (371)
Q Consensus       351 ~~v~~~~Dl---~g~~R~~~a~~  370 (371)
                      ..+..+...   .|..-|++|.+
T Consensus       193 ~~~~~~~~~vP~~g~~~~~~as~  215 (262)
T 2cmg_A          193 SVAMPFVAPLRILSNKGYIYASF  215 (262)
T ss_dssp             SEEEEECCTTCTTCCEEEEEEES
T ss_pred             CceEEEEEccCCCcccEEEEeeC
Confidence            777776644   67777777764

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.23  E-value=8.6e-11  Score=115.12  Aligned_cols=135  Identities=19%  Similarity=0.120  Sum_probs=97.0

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ...+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.|+++       ++++++.+|++++++.  +  |+|+++-
T Consensus       203 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~p~--~--D~v~~~~  269 (368)
T 3reo_A          203 GLTTIVDVGGGTGAVASMIVAKY-PSINAINFDL-PHVIQDAPAF-------SGVEHLGGDMFDGVPK--G--DAIFIKW  269 (368)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTTCCCC--C--SEEEEES
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeh-HHHHHhhhhc-------CCCEEEecCCCCCCCC--C--CEEEEec
Confidence            45799999999999999999986 8899999999 8888877642       4699999999875542  3  9999831


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC-----------------------
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG-----------------------  331 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~-----------------------  331 (371)
                      -      ++.+.                  -+....+++++.+.|+|||++++....                       
T Consensus       270 v------lh~~~------------------~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~  325 (368)
T 3reo_A          270 I------CHDWS------------------DEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLA  325 (368)
T ss_dssp             C------GGGBC------------------HHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHH
T ss_pred             h------hhcCC------------------HHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHh
Confidence            1      11111                  123457899999999999998874311                       


Q ss_pred             ------cCcHHHHHHHHhccccCCceeEEEEecCCCCceEEEEEe
Q 017476          332 ------EKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFR  370 (371)
Q Consensus       332 ------~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~~  370 (371)
                            ....++..+++++   .||..+++..-..+. -++-++|
T Consensus       326 ~~~~g~~rt~~e~~~ll~~---AGF~~v~~~~~~~~~-~vie~~k  366 (368)
T 3reo_A          326 YNPGGKERTEKEFQALAMA---SGFRGFKVASCAFNT-YVMEFLK  366 (368)
T ss_dssp             HSSBCCCCCHHHHHHHHHH---TTCCEEEEEEEETTE-EEEEEEC
T ss_pred             hcCCCccCCHHHHHHHHHH---CCCeeeEEEEeCCCc-EEEEEEe
Confidence                  1124456677775   789999888765443 3444444

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.23  E-value=1.2e-10  Score=109.55  Aligned_cols=108  Identities=10%  Similarity=0.097  Sum_probs=80.9

Q ss_pred             CCeEEEECCcc---cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc---------ccC
Q 017476          196 DGFWVDLGTGS---GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL---------KDV  263 (371)
Q Consensus       196 ~~~VLDlG~Gs---G~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l---------~~~  263 (371)
                      ..+|||+|||+   |.++..+++. .++.+|+++|+|+.+++.|++++..   .++++++++|+.+..         ...
T Consensus        78 ~~~vLDlGcG~pt~G~~~~~~~~~-~p~~~v~~vD~sp~~l~~Ar~~~~~---~~~v~~~~~D~~~~~~~~~~~~~~~~~  153 (274)
T 2qe6_A           78 ISQFLDLGSGLPTVQNTHEVAQSV-NPDARVVYVDIDPMVLTHGRALLAK---DPNTAVFTADVRDPEYILNHPDVRRMI  153 (274)
T ss_dssp             CCEEEEETCCSCCSSCHHHHHHHH-CTTCEEEEEESSHHHHHHHHHHHTT---CTTEEEEECCTTCHHHHHHSHHHHHHC
T ss_pred             CCEEEEECCCCCCCChHHHHHHHh-CCCCEEEEEECChHHHHHHHHhcCC---CCCeEEEEeeCCCchhhhccchhhccC
Confidence            46999999999   9887777665 4788999999999999999998743   346999999997531         001


Q ss_pred             -CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC
Q 017476          264 -EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG  331 (371)
Q Consensus       264 -~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~  331 (371)
                       ..+||+|+++-              +..|-|..          ....+++++.+.|+|||+|++....
T Consensus       154 d~~~~d~v~~~~--------------vlh~~~d~----------~~~~~l~~~~~~L~pGG~l~i~~~~  198 (274)
T 2qe6_A          154 DFSRPAAIMLVG--------------MLHYLSPD----------VVDRVVGAYRDALAPGSYLFMTSLV  198 (274)
T ss_dssp             CTTSCCEEEETT--------------TGGGSCTT----------THHHHHHHHHHHSCTTCEEEEEEEB
T ss_pred             CCCCCEEEEEec--------------hhhhCCcH----------HHHHHHHHHHHhCCCCcEEEEEEec
Confidence             14799999852              11222110          1347889999999999999998743

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.22  E-value=2.8e-12  Score=120.00  Aligned_cols=80  Identities=19%  Similarity=0.166  Sum_probs=68.3

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCH-------HHHHHHHHHHHHcCCCCcEEEEEcCcccccccCC---C
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNP-------LAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVE---G  265 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~-------~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~---~  265 (371)
                      +.+|||+|||+|.+++.+|+.   +.+|+|+|+|+       .+++.|++|++.+++.++++++++|+.+.+....   +
T Consensus        84 ~~~VLDlgcG~G~~a~~lA~~---g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~  160 (258)
T 2r6z_A           84 HPTVWDATAGLGRDSFVLASL---GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQG  160 (258)
T ss_dssp             CCCEEETTCTTCHHHHHHHHT---TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHC
T ss_pred             cCeEEEeeCccCHHHHHHHHh---CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCC
Confidence            468999999999999999984   46899999999       9999999999988887779999999977544222   5


Q ss_pred             ceeEEEEcCCCCC
Q 017476          266 KLSGVVSNPPYIP  278 (371)
Q Consensus       266 ~fDlIvsNPPYi~  278 (371)
                      +||+|++||||..
T Consensus       161 ~fD~V~~dP~~~~  173 (258)
T 2r6z_A          161 KPDIVYLDPMYPE  173 (258)
T ss_dssp             CCSEEEECCCC--
T ss_pred             CccEEEECCCCCC
Confidence            8999999999965

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.21  E-value=1.1e-10  Score=104.71  Aligned_cols=122  Identities=14%  Similarity=0.108  Sum_probs=88.2

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|.++..++      .+|+|+|+|+.                +++++++|+.+ ++...++||+|+++.
T Consensus        67 ~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~----------------~~~~~~~d~~~-~~~~~~~fD~v~~~~  123 (215)
T 2zfu_A           67 ASLVVADFGCGDCRLASSIR------NPVHCFDLASL----------------DPRVTVCDMAQ-VPLEDESVDVAVFCL  123 (215)
T ss_dssp             TTSCEEEETCTTCHHHHHCC------SCEEEEESSCS----------------STTEEESCTTS-CSCCTTCEEEEEEES
T ss_pred             CCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC----------------CceEEEecccc-CCCCCCCEeEEEEeh
Confidence            45689999999999987662      58999999997                26788999866 333346899999965


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCc--CcHHHHHHHHhccccCCcee
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGE--KQCKFLKNYLENDSACSFCN  352 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~--~q~~~v~~~l~~~~~~gf~~  352 (371)
                      .+..               +            ....+++.+.+.|+|||++++.....  ...+.+.+++++   .||..
T Consensus       124 ~l~~---------------~------------~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~---~Gf~~  173 (215)
T 2zfu_A          124 SLMG---------------T------------NIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTK---LGFKI  173 (215)
T ss_dssp             CCCS---------------S------------CHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHH---TTEEE
T ss_pred             hccc---------------c------------CHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHH---CCCEE
Confidence            4320               0            12367888899999999999865322  356788888886   78977


Q ss_pred             EEEEecCCCCceEEEEEe
Q 017476          353 VSIVSDFAGIQRFVTGFR  370 (371)
Q Consensus       353 v~~~~Dl~g~~R~~~a~~  370 (371)
                      ++. ....+...++.++|
T Consensus       174 ~~~-~~~~~~~~~~~~~k  190 (215)
T 2zfu_A          174 VSK-DLTNSHFFLFDFQK  190 (215)
T ss_dssp             EEE-ECCSTTCEEEEEEE
T ss_pred             EEE-ecCCCeEEEEEEEe
Confidence            663 34455556666665

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.21  E-value=3.2e-11  Score=112.68  Aligned_cols=88  Identities=20%  Similarity=0.266  Sum_probs=68.9

Q ss_pred             HHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccc
Q 017476          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG  258 (371)
Q Consensus       179 lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~  258 (371)
                      +++.+++.+    ...++.+|||+|||+|.++..+++.   ..+|+|+|+|+.+++.+++|+..   .++++++++|+.+
T Consensus        17 i~~~iv~~~----~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avEid~~~~~~~~~~~~~---~~~v~~i~~D~~~   86 (255)
T 3tqs_A           17 VLQKIVSAI----HPQKTDTLVEIGPGRGALTDYLLTE---CDNLALVEIDRDLVAFLQKKYNQ---QKNITIYQNDALQ   86 (255)
T ss_dssp             HHHHHHHHH----CCCTTCEEEEECCTTTTTHHHHTTT---SSEEEEEECCHHHHHHHHHHHTT---CTTEEEEESCTTT
T ss_pred             HHHHHHHhc----CCCCcCEEEEEcccccHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHhh---CCCcEEEEcchHh
Confidence            445555555    3335679999999999999999985   37999999999999999999864   2469999999977


Q ss_pred             c-cccC--CCceeEEEEcCCCC
Q 017476          259 K-LKDV--EGKLSGVVSNPPYI  277 (371)
Q Consensus       259 ~-l~~~--~~~fDlIvsNPPYi  277 (371)
                      . +...  .++|| ||+||||.
T Consensus        87 ~~~~~~~~~~~~~-vv~NlPY~  107 (255)
T 3tqs_A           87 FDFSSVKTDKPLR-VVGNLPYN  107 (255)
T ss_dssp             CCGGGSCCSSCEE-EEEECCHH
T ss_pred             CCHHHhccCCCeE-EEecCCcc
Confidence            4 2221  24688 99999994

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.21  E-value=6.6e-13  Score=122.79  Aligned_cols=78  Identities=15%  Similarity=0.269  Sum_probs=63.8

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|.++..+++.   ..+|+|+|+|+.+++.|++|+.   ..++++++++|+.+......++| .||+||
T Consensus        29 ~~~~VLDiG~G~G~~~~~l~~~---~~~v~~id~~~~~~~~a~~~~~---~~~~v~~~~~D~~~~~~~~~~~f-~vv~n~  101 (245)
T 1yub_A           29 ETDTVYEIGTGKGHLTTKLAKI---SKQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDILQFQFPNKQRY-KIVGNI  101 (245)
T ss_dssp             SSEEEEECSCCCSSCSHHHHHH---SSEEEESSSSCSSSSSSSCTTT---TCSEEEECCSCCTTTTCCCSSEE-EEEEEC
T ss_pred             CCCEEEEEeCCCCHHHHHHHHh---CCeEEEEECCHHHHHHHHHHhc---cCCceEEEECChhhcCcccCCCc-EEEEeC
Confidence            4669999999999999999987   2799999999999999998875   23569999999976421112578 899999


Q ss_pred             CCCCC
Q 017476          275 PYIPS  279 (371)
Q Consensus       275 PYi~~  279 (371)
                      ||...
T Consensus       102 Py~~~  106 (245)
T 1yub_A          102 PYHLS  106 (245)
T ss_dssp             CSSSC
T ss_pred             Ccccc
Confidence            99754

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.20  E-value=5.5e-11  Score=112.61  Aligned_cols=91  Identities=16%  Similarity=0.254  Sum_probs=73.6

Q ss_pred             HHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcc
Q 017476          178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF  257 (371)
Q Consensus       178 ~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~  257 (371)
                      .+++.+++.+    ...++.+|||+|||+|.++..+++.   ..+|+|+|+|+.+++.|++++..++..++++++++|+.
T Consensus        15 ~i~~~i~~~~----~~~~~~~VLDiG~G~G~lt~~L~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~   87 (285)
T 1zq9_A           15 LIINSIIDKA----ALRPTDVVLEVGPGTGNMTVKLLEK---AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVL   87 (285)
T ss_dssp             HHHHHHHHHT----CCCTTCEEEEECCTTSTTHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTT
T ss_pred             HHHHHHHHhc----CCCCCCEEEEEcCcccHHHHHHHhh---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEccee
Confidence            3455555554    2335679999999999999999996   36999999999999999999887776567999999997


Q ss_pred             cccccCCCceeEEEEcCCCCC
Q 017476          258 GKLKDVEGKLSGVVSNPPYIP  278 (371)
Q Consensus       258 ~~l~~~~~~fDlIvsNPPYi~  278 (371)
                      +. ..  ..||+|++|+||..
T Consensus        88 ~~-~~--~~fD~vv~nlpy~~  105 (285)
T 1zq9_A           88 KT-DL--PFFDTCVANLPYQI  105 (285)
T ss_dssp             TS-CC--CCCSEEEEECCGGG
T ss_pred             cc-cc--hhhcEEEEecCccc
Confidence            63 21  37999999999964

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.19  E-value=3.8e-11  Score=113.46  Aligned_cols=108  Identities=11%  Similarity=-0.044  Sum_probs=74.1

Q ss_pred             CCCeEEEECCcccHHHHHHH----HHhCCCcEE--EEEeCCHHHHHHHHHHHHHc-CCCC-cEEEEEcCcccccc-----
Q 017476          195 RDGFWVDLGTGSGAIAIGIA----RVLGSKGSI--IAVDLNPLAAAVAAFNAQRY-GLQD-IIEIRQGSWFGKLK-----  261 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la----~~~~~~~~V--~gvDis~~al~~A~~n~~~~-gl~~-~v~~~~gD~~~~l~-----  261 (371)
                      ++.+|||+|||+|.++..++    ... ++..|  +|+|.|++|++.|++++... ++.+ ++.+..++..+...     
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~-~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  130 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQY-PGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK  130 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHS-TTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhC-CCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence            45699999999998765443    332 56654  99999999999999998754 4433 23445666533210     


Q ss_pred             cCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          262 DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       262 ~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      ..+++||+|+++              .+..|-+            +....++++.++|||||++++..
T Consensus       131 ~~~~~fD~V~~~--------------~~l~~~~------------d~~~~l~~~~r~LkpgG~l~i~~  172 (292)
T 2aot_A          131 KELQKWDFIHMI--------------QMLYYVK------------DIPATLKFFHSLLGTNAKMLIIV  172 (292)
T ss_dssp             TCCCCEEEEEEE--------------SCGGGCS------------CHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cCCCceeEEEEe--------------eeeeecC------------CHHHHHHHHHHHcCCCcEEEEEE
Confidence            124789999993              2223322            23478899999999999999854

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.19  E-value=7.5e-11  Score=112.43  Aligned_cols=89  Identities=19%  Similarity=0.266  Sum_probs=70.6

Q ss_pred             HHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcc
Q 017476          178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF  257 (371)
Q Consensus       178 ~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~  257 (371)
                      .+++.+++.+    ...++.+|||+|||+|.++..+++.   ..+|+|||+|+.+++.|++++...   ++++++++|+.
T Consensus        37 ~i~~~Iv~~l----~~~~~~~VLEIG~G~G~lT~~La~~---~~~V~aVEid~~li~~a~~~~~~~---~~v~vi~gD~l  106 (295)
T 3gru_A           37 NFVNKAVESA----NLTKDDVVLEIGLGKGILTEELAKN---AKKVYVIEIDKSLEPYANKLKELY---NNIEIIWGDAL  106 (295)
T ss_dssp             HHHHHHHHHT----TCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCGGGHHHHHHHHHHC---SSEEEEESCTT
T ss_pred             HHHHHHHHhc----CCCCcCEEEEECCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHhccC---CCeEEEECchh
Confidence            3455555554    2335679999999999999999996   479999999999999999998732   35999999997


Q ss_pred             cccccCCCceeEEEEcCCCC
Q 017476          258 GKLKDVEGKLSGVVSNPPYI  277 (371)
Q Consensus       258 ~~l~~~~~~fDlIvsNPPYi  277 (371)
                      +.... ...||.|++|+||.
T Consensus       107 ~~~~~-~~~fD~Iv~NlPy~  125 (295)
T 3gru_A          107 KVDLN-KLDFNKVVANLPYQ  125 (295)
T ss_dssp             TSCGG-GSCCSEEEEECCGG
T ss_pred             hCCcc-cCCccEEEEeCccc
Confidence            63211 24799999999995

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.19  E-value=3.3e-11  Score=115.25  Aligned_cols=93  Identities=18%  Similarity=0.223  Sum_probs=74.7

Q ss_pred             HHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcc
Q 017476          178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF  257 (371)
Q Consensus       178 ~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~  257 (371)
                      .+++.+++.+    ...++.+|||+|||+|.+++.+++.+ ++.+|+|+|+|+.|++.|++|+..++  ++++++++|+.
T Consensus        13 vLl~e~l~~L----~~~~g~~vLD~g~G~G~~s~~la~~~-~~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~   85 (301)
T 1m6y_A           13 VMVREVIEFL----KPEDEKIILDCTVGEGGHSRAILEHC-PGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYR   85 (301)
T ss_dssp             TTHHHHHHHH----CCCTTCEEEETTCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGG
T ss_pred             HHHHHHHHhc----CCCCCCEEEEEeCCcCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHH
Confidence            4556666666    23356799999999999999999986 57899999999999999999998887  46999999975


Q ss_pred             ccc---ccC-CCceeEEEEcCCCC
Q 017476          258 GKL---KDV-EGKLSGVVSNPPYI  277 (371)
Q Consensus       258 ~~l---~~~-~~~fDlIvsNPPYi  277 (371)
                      +..   ... .++||.|++||||.
T Consensus        86 ~l~~~l~~~g~~~~D~Vl~D~gvS  109 (301)
T 1m6y_A           86 EADFLLKTLGIEKVDGILMDLGVS  109 (301)
T ss_dssp             GHHHHHHHTTCSCEEEEEEECSCC
T ss_pred             HHHHHHHhcCCCCCCEEEEcCccc
Confidence            521   111 14799999999973

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.17  E-value=5.5e-11  Score=112.02  Aligned_cols=88  Identities=13%  Similarity=0.064  Sum_probs=68.7

Q ss_pred             HHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccc
Q 017476          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG  258 (371)
Q Consensus       179 lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~  258 (371)
                      +++.+++.+    ...++ +|||+|||+|.++..+++.   ..+|+|+|+|+++++.+++|+.    .++++++++|+.+
T Consensus        35 i~~~Iv~~~----~~~~~-~VLEIG~G~G~lt~~L~~~---~~~V~avEid~~~~~~l~~~~~----~~~v~vi~~D~l~  102 (271)
T 3fut_A           35 HLRRIVEAA----RPFTG-PVFEVGPGLGALTRALLEA---GAEVTAIEKDLRLRPVLEETLS----GLPVRLVFQDALL  102 (271)
T ss_dssp             HHHHHHHHH----CCCCS-CEEEECCTTSHHHHHHHHT---TCCEEEEESCGGGHHHHHHHTT----TSSEEEEESCGGG
T ss_pred             HHHHHHHhc----CCCCC-eEEEEeCchHHHHHHHHHc---CCEEEEEECCHHHHHHHHHhcC----CCCEEEEECChhh
Confidence            445555554    23346 9999999999999999985   3689999999999999999875    2469999999976


Q ss_pred             ccccCCCceeEEEEcCCCCC
Q 017476          259 KLKDVEGKLSGVVSNPPYIP  278 (371)
Q Consensus       259 ~l~~~~~~fDlIvsNPPYi~  278 (371)
                      ........+|.||+|+||.-
T Consensus       103 ~~~~~~~~~~~iv~NlPy~i  122 (271)
T 3fut_A          103 YPWEEVPQGSLLVANLPYHI  122 (271)
T ss_dssp             SCGGGSCTTEEEEEEECSSC
T ss_pred             CChhhccCccEEEecCcccc
Confidence            42221136899999999964

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.16  E-value=3.7e-10  Score=110.46  Aligned_cols=126  Identities=18%  Similarity=0.140  Sum_probs=92.5

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ...+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.|+++       ++++++.+|++++++.  +  |+|++. 
T Consensus       201 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~--~--D~v~~~-  266 (364)
T 3p9c_A          201 GLGTLVDVGGGVGATVAAIAAHY-PTIKGVNFDL-PHVISEAPQF-------PGVTHVGGDMFKEVPS--G--DTILMK-  266 (364)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTTCCCC--C--SEEEEE-
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHC-CCCeEEEecC-HHHHHhhhhc-------CCeEEEeCCcCCCCCC--C--CEEEeh-
Confidence            45799999999999999999986 8899999999 8888777642       4699999999885542  3  999982 


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC-----------------------
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG-----------------------  331 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~-----------------------  331 (371)
                                   .+..+-+          -+....+++++.+.|+|||++++....                       
T Consensus       267 -------------~vlh~~~----------d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~  323 (364)
T 3p9c_A          267 -------------WILHDWS----------DQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLA  323 (364)
T ss_dssp             -------------SCGGGSC----------HHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHH
T ss_pred             -------------HHhccCC----------HHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHh
Confidence                         1111111          134558899999999999998874311                       


Q ss_pred             ------cCcHHHHHHHHhccccCCceeEEEEecCC
Q 017476          332 ------EKQCKFLKNYLENDSACSFCNVSIVSDFA  360 (371)
Q Consensus       332 ------~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~  360 (371)
                            ....++..+++++   .||+.+++..-..
T Consensus       324 ~~~~g~~rt~~e~~~ll~~---AGF~~v~~~~~~~  355 (364)
T 3p9c_A          324 HNPGGRERYEREFQALARG---AGFTGVKSTYIYA  355 (364)
T ss_dssp             HCSSCCCCBHHHHHHHHHH---TTCCEEEEEEEET
T ss_pred             cccCCccCCHHHHHHHHHH---CCCceEEEEEcCC
Confidence                  1123455666664   7899998876543

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.15  E-value=2.3e-10  Score=111.90  Aligned_cols=135  Identities=16%  Similarity=0.095  Sum_probs=95.8

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      +..+|||+|||+|.++..+++.+ ++.+++++|+ +.+++.|+++       .+++++.+|++++++   . ||+|+++-
T Consensus       209 ~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~---~-~D~v~~~~  275 (372)
T 1fp1_D          209 GISTLVDVGGGSGRNLELIISKY-PLIKGINFDL-PQVIENAPPL-------SGIEHVGGDMFASVP---Q-GDAMILKA  275 (372)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTTCCC---C-EEEEEEES
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHC-CCCeEEEeCh-HHHHHhhhhc-------CCCEEEeCCcccCCC---C-CCEEEEec
Confidence            46799999999999999999986 7889999999 9998877642       349999999987432   3 99999942


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE---CCc-------------------
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET---NGE-------------------  332 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~---~~~-------------------  332 (371)
                      -              ..|-+          -.....+++++.+.|+|||++++..   ...                   
T Consensus       276 ~--------------lh~~~----------d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~  331 (372)
T 1fp1_D          276 V--------------CHNWS----------DEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFI  331 (372)
T ss_dssp             S--------------GGGSC----------HHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHH
T ss_pred             c--------------cccCC----------HHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHh
Confidence            1              11111          1223478999999999999998752   110                   


Q ss_pred             ------CcHHHHHHHHhccccCCceeEEEEecCCCCceEEEEE
Q 017476          333 ------KQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGF  369 (371)
Q Consensus       333 ------~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~  369 (371)
                            ...+++.+++++   .||..+++..-..|...++-++
T Consensus       332 ~~~~~~~t~~e~~~ll~~---aGf~~~~~~~~~~~~~~vie~~  371 (372)
T 1fp1_D          332 TVGGRERTEKQYEKLSKL---SGFSKFQVACRAFNSLGVMEFY  371 (372)
T ss_dssp             HHSCCCEEHHHHHHHHHH---TTCSEEEEEEEETTTEEEEEEE
T ss_pred             ccCCccCCHHHHHHHHHH---CCCceEEEEEcCCCCeEEEEEe
Confidence                  123455566664   7899888887444522444443

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.13  E-value=2e-10  Score=111.43  Aligned_cols=134  Identities=15%  Similarity=0.124  Sum_probs=97.5

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ...+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.|+++      + +++++.+|++++++    .||+|+++-
T Consensus       188 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~-~v~~~~~d~~~~~p----~~D~v~~~~  254 (352)
T 1fp2_A          188 GLESIVDVGGGTGTTAKIICETF-PKLKCIVFDR-PQVVENLSGS------N-NLTYVGGDMFTSIP----NADAVLLKY  254 (352)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCB------T-TEEEEECCTTTCCC----CCSEEEEES
T ss_pred             cCceEEEeCCCccHHHHHHHHHC-CCCeEEEeeC-HHHHhhcccC------C-CcEEEeccccCCCC----CccEEEeeh
Confidence            35699999999999999999986 7889999999 9999887651      2 39999999987443    399999842


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhccccc---CcEEEEEECC---c----------------
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKP---GGFFAFETNG---E----------------  332 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~Lkp---gG~lvle~~~---~----------------  332 (371)
                      -              ..|-+          -.....+++++.+.|+|   ||++++....   .                
T Consensus       255 ~--------------lh~~~----------d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~  310 (352)
T 1fp2_A          255 I--------------LHNWT----------DKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVN  310 (352)
T ss_dssp             C--------------GGGSC----------HHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHH
T ss_pred             h--------------hccCC----------HHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHH
Confidence            1              11111          12234789999999999   9998875311   0                


Q ss_pred             --------CcHHHHHHHHhccccCCceeEEEEecCCCCceEEEEE
Q 017476          333 --------KQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGF  369 (371)
Q Consensus       333 --------~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~  369 (371)
                              ...+++.+++++   .||..+++.. ..|...++.++
T Consensus       311 ~~~~~g~~~t~~e~~~ll~~---aGf~~~~~~~-~~~~~~vie~~  351 (352)
T 1fp2_A          311 MACLNGKERNEEEWKKLFIE---AGFQHYKISP-LTGFLSLIEIY  351 (352)
T ss_dssp             GGGGTCCCEEHHHHHHHHHH---TTCCEEEEEE-EETTEEEEEEE
T ss_pred             HHhccCCCCCHHHHHHHHHH---CCCCeeEEEe-cCCCcEEEEEe
Confidence                    123456677775   7899888877 45666666554

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.13  E-value=1.8e-10  Score=106.67  Aligned_cols=89  Identities=10%  Similarity=0.128  Sum_probs=67.6

Q ss_pred             HHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcc
Q 017476          178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF  257 (371)
Q Consensus       178 ~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~  257 (371)
                      .+++.+.+.+    ...++.+|||+|||+|.++..+++.   ..+|+|+|+|+.+++.|++|+...   ++++++++|+.
T Consensus        17 ~~~~~i~~~~----~~~~~~~VLDiG~G~G~lt~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~---~~v~~~~~D~~   86 (244)
T 1qam_A           17 HNIDKIMTNI----RLNEHDNIFEIGSGKGHFTLELVQR---CNFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDIL   86 (244)
T ss_dssp             HHHHHHHTTC----CCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGG
T ss_pred             HHHHHHHHhC----CCCCCCEEEEEeCCchHHHHHHHHc---CCeEEEEECCHHHHHHHHHhhccC---CCeEEEEChHH
Confidence            3445555444    2335679999999999999999997   279999999999999999987532   46999999997


Q ss_pred             cccccCCCceeEEEEcCCCC
Q 017476          258 GKLKDVEGKLSGVVSNPPYI  277 (371)
Q Consensus       258 ~~l~~~~~~fDlIvsNPPYi  277 (371)
                      +........| .|++||||.
T Consensus        87 ~~~~~~~~~~-~vv~nlPy~  105 (244)
T 1qam_A           87 QFKFPKNQSY-KIFGNIPYN  105 (244)
T ss_dssp             GCCCCSSCCC-EEEEECCGG
T ss_pred             hCCcccCCCe-EEEEeCCcc
Confidence            6422112345 699999995

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.12  E-value=1.8e-10  Score=106.70  Aligned_cols=101  Identities=14%  Similarity=0.096  Sum_probs=76.9

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|.++..+++.   +.+|+|+|+|+.+++.|+++..     .  .++++|+.+. +...++||+|+++.
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~-----~--~~~~~d~~~~-~~~~~~fD~v~~~~  122 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKGV-----K--NVVEAKAEDL-PFPSGAFEAVLALG  122 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHTC-----S--CEEECCTTSC-CSCTTCEEEEEECS
T ss_pred             CCCeEEEeCCCcCHHHHHHHHc---CCeEEEEeCCHHHHHHHHhhcC-----C--CEEECcHHHC-CCCCCCEEEEEEcc
Confidence            4679999999999999999884   4699999999999999998753     1  2888888653 33357899999953


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG  331 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~  331 (371)
                      ...             .+.+            ....+++.+.+.|+|||.+++...+
T Consensus       123 ~~~-------------~~~~------------~~~~~l~~~~~~LkpgG~l~~~~~~  154 (260)
T 2avn_A          123 DVL-------------SYVE------------NKDKAFSEIRRVLVPDGLLIATVDN  154 (260)
T ss_dssp             SHH-------------HHCS------------CHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             hhh-------------hccc------------cHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            210             0000            1347888999999999999998743

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=99.10  E-value=2.9e-10  Score=107.56  Aligned_cols=90  Identities=18%  Similarity=0.255  Sum_probs=66.7

Q ss_pred             HHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcc
Q 017476          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS-KGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF  257 (371)
Q Consensus       179 lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~-~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~  257 (371)
                      +++.+++.+    ...++.+|||+|||+|.++..+++.... +.+|+|+|+|+.+++.|++|.     .++++++++|+.
T Consensus        30 i~~~iv~~~----~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-----~~~v~~i~~D~~  100 (279)
T 3uzu_A           30 VIDAIVAAI----RPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-----GELLELHAGDAL  100 (279)
T ss_dssp             HHHHHHHHH----CCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-----GGGEEEEESCGG
T ss_pred             HHHHHHHhc----CCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-----CCCcEEEECChh
Confidence            345555554    2335679999999999999999997522 245999999999999999993     346999999997


Q ss_pred             ccc-ccCCC----ceeEEEEcCCCC
Q 017476          258 GKL-KDVEG----KLSGVVSNPPYI  277 (371)
Q Consensus       258 ~~l-~~~~~----~fDlIvsNPPYi  277 (371)
                      +.. +....    ..+.||+|+||.
T Consensus       101 ~~~~~~~~~~~~~~~~~vv~NlPY~  125 (279)
T 3uzu_A          101 TFDFGSIARPGDEPSLRIIGNLPYN  125 (279)
T ss_dssp             GCCGGGGSCSSSSCCEEEEEECCHH
T ss_pred             cCChhHhcccccCCceEEEEccCcc
Confidence            632 22111    346899999994

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=99.09  E-value=8.3e-11  Score=110.02  Aligned_cols=79  Identities=25%  Similarity=0.262  Sum_probs=65.7

Q ss_pred             CeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-------C-CCCcEEEEEcCcccccccCCCcee
Q 017476          197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY-------G-LQDIIEIRQGSWFGKLKDVEGKLS  268 (371)
Q Consensus       197 ~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~-------g-l~~~v~~~~gD~~~~l~~~~~~fD  268 (371)
                      .+|||+|||+|..++.+|+.   +++|++||+++.+.+++++|++..       + +.++++++++|..+.+....++||
T Consensus        90 ~~VLDl~~G~G~dal~lA~~---g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fD  166 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ  166 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCS
T ss_pred             CEEEEcCCcCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCC
Confidence            69999999999999999996   358999999999888888887543       2 335699999999876654445799


Q ss_pred             EEEEcCCCCC
Q 017476          269 GVVSNPPYIP  278 (371)
Q Consensus       269 lIvsNPPYi~  278 (371)
                      +|++||||..
T Consensus       167 vV~lDP~y~~  176 (258)
T 2oyr_A          167 VVYLDPMFPH  176 (258)
T ss_dssp             EEEECCCCCC
T ss_pred             EEEEcCCCCC
Confidence            9999999954

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.06  E-value=1e-09  Score=106.63  Aligned_cols=133  Identities=12%  Similarity=0.169  Sum_probs=96.4

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCC
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP  275 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPP  275 (371)
                      ..+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.|++      .. +++++.+|++++++    .||+|+++-.
T Consensus       194 ~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~-~v~~~~~d~~~~~~----~~D~v~~~~v  260 (358)
T 1zg3_A          194 LESLVDVGGGTGGVTKLIHEIF-PHLKCTVFDQ-PQVVGNLTG------NE-NLNFVGGDMFKSIP----SADAVLLKWV  260 (358)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHC-TTSEEEEEEC-HHHHSSCCC------CS-SEEEEECCTTTCCC----CCSEEEEESC
T ss_pred             CCEEEEECCCcCHHHHHHHHHC-CCCeEEEecc-HHHHhhccc------CC-CcEEEeCccCCCCC----CceEEEEccc
Confidence            4699999999999999999986 8889999999 788877664      23 49999999987432    4999999532


Q ss_pred             CCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhccccc---CcEEEEEECC-----c---------------
Q 017476          276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKP---GGFFAFETNG-----E---------------  332 (371)
Q Consensus       276 Yi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~Lkp---gG~lvle~~~-----~---------------  332 (371)
                      +              .+-+          -.....+++++.+.|+|   ||++++....     .               
T Consensus       261 l--------------h~~~----------d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~  316 (358)
T 1zg3_A          261 L--------------HDWN----------DEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVM  316 (358)
T ss_dssp             G--------------GGSC----------HHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHH
T ss_pred             c--------------cCCC----------HHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHH
Confidence            2              1111          12234789999999999   9988874311     0               


Q ss_pred             --------CcHHHHHHHHhccccCCceeEEEEecCCCCceEEEEE
Q 017476          333 --------KQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGF  369 (371)
Q Consensus       333 --------~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~  369 (371)
                              ...+++.+++++   .||..+++.. ..|...++.++
T Consensus       317 ~~~~~g~~~t~~e~~~ll~~---aGf~~~~~~~-~~~~~~vie~~  357 (358)
T 1zg3_A          317 LTMFLGKERTKQEWEKLIYD---AGFSSYKITP-ISGFKSLIEVY  357 (358)
T ss_dssp             HHHHSCCCEEHHHHHHHHHH---TTCCEEEEEE-ETTTEEEEEEE
T ss_pred             hccCCCCCCCHHHHHHHHHH---cCCCeeEEEe-cCCCcEEEEEe
Confidence                    133455666664   7899988887 56666666554

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.05  E-value=2.7e-10  Score=106.10  Aligned_cols=74  Identities=12%  Similarity=0.067  Sum_probs=65.6

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      .+.+|||||||+|-+++.++.. .+..+|+|+|+|+.+++.++.|+..+|+.  .++...|......  .++||++++|
T Consensus       132 ~p~~VLDLGCG~GpLAl~~~~~-~p~a~y~a~DId~~~le~a~~~l~~~g~~--~~~~v~D~~~~~p--~~~~DvaL~l  205 (281)
T 3lcv_B          132 RPNTLRDLACGLNPLAAPWMGL-PAETVYIASDIDARLVGFVDEALTRLNVP--HRTNVADLLEDRL--DEPADVTLLL  205 (281)
T ss_dssp             CCSEEEETTCTTGGGCCTTTTC-CTTCEEEEEESBHHHHHHHHHHHHHTTCC--EEEEECCTTTSCC--CSCCSEEEET
T ss_pred             CCceeeeeccCccHHHHHHHhh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEeeecccCC--CCCcchHHHH
Confidence            3679999999999999999886 48899999999999999999999999986  7889999876544  4789999995

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=99.04  E-value=4.6e-10  Score=104.39  Aligned_cols=88  Identities=16%  Similarity=0.197  Sum_probs=66.8

Q ss_pred             HHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcc
Q 017476          178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF  257 (371)
Q Consensus       178 ~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~  257 (371)
                      .+++.+.+.+    ...++.+|||+|||+|.++..+++.  +..+|+|+|+|+.+++.+++|    + ..+++++++|+.
T Consensus        18 ~i~~~iv~~~----~~~~~~~VLDiG~G~G~lt~~L~~~--~~~~v~avEid~~~~~~~~~~----~-~~~v~~i~~D~~   86 (249)
T 3ftd_A           18 GVLKKIAEEL----NIEEGNTVVEVGGGTGNLTKVLLQH--PLKKLYVIELDREMVENLKSI----G-DERLEVINEDAS   86 (249)
T ss_dssp             HHHHHHHHHT----TCCTTCEEEEEESCHHHHHHHHTTS--CCSEEEEECCCHHHHHHHTTS----C-CTTEEEECSCTT
T ss_pred             HHHHHHHHhc----CCCCcCEEEEEcCchHHHHHHHHHc--CCCeEEEEECCHHHHHHHHhc----c-CCCeEEEEcchh
Confidence            3455555554    2335679999999999999999885  357999999999999999987    2 246999999997


Q ss_pred             cc-cccCCCceeEEEEcCCCC
Q 017476          258 GK-LKDVEGKLSGVVSNPPYI  277 (371)
Q Consensus       258 ~~-l~~~~~~fDlIvsNPPYi  277 (371)
                      +. ++...+.+ .|++||||.
T Consensus        87 ~~~~~~~~~~~-~vv~NlPy~  106 (249)
T 3ftd_A           87 KFPFCSLGKEL-KVVGNLPYN  106 (249)
T ss_dssp             TCCGGGSCSSE-EEEEECCTT
T ss_pred             hCChhHccCCc-EEEEECchh
Confidence            64 22222234 899999995

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.02  E-value=8.6e-10  Score=108.79  Aligned_cols=97  Identities=15%  Similarity=0.197  Sum_probs=73.2

Q ss_pred             CCCeEEEECCc------ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccC-----
Q 017476          195 RDGFWVDLGTG------SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV-----  263 (371)
Q Consensus       195 ~~~~VLDlG~G------sG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~-----  263 (371)
                      ++.+|||||||      +|..++.+++.+.++++|+|+|+|+.+.         . ...+++++++|..+. +..     
T Consensus       216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~-~~~rI~fv~GDa~dl-pf~~~l~~  284 (419)
T 3sso_A          216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------V-DELRIRTIQGDQNDA-EFLDRIAR  284 (419)
T ss_dssp             SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------G-CBTTEEEEECCTTCH-HHHHHHHH
T ss_pred             CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------h-cCCCcEEEEeccccc-chhhhhhc
Confidence            46799999999      7777888877655789999999999872         1 234699999998662 111     


Q ss_pred             -CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          264 -EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       264 -~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                       .++||+|++|--               .+            .......++++.++|||||+++++.
T Consensus       285 ~d~sFDlVisdgs---------------H~------------~~d~~~aL~el~rvLKPGGvlVi~D  324 (419)
T 3sso_A          285 RYGPFDIVIDDGS---------------HI------------NAHVRTSFAALFPHVRPGGLYVIED  324 (419)
T ss_dssp             HHCCEEEEEECSC---------------CC------------HHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             ccCCccEEEECCc---------------cc------------chhHHHHHHHHHHhcCCCeEEEEEe
Confidence             378999999510               00            2345578899999999999999963

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=99.00  E-value=2e-09  Score=105.14  Aligned_cols=145  Identities=14%  Similarity=0.101  Sum_probs=100.6

Q ss_pred             CCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-----CcEEEEEcCcccccccCCCce
Q 017476          193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ-----DIIEIRQGSWFGKLKDVEGKL  267 (371)
Q Consensus       193 ~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~-----~~v~~~~gD~~~~l~~~~~~f  267 (371)
                      ..++.+|||+|+|.|.-+..++... .+..|+++|+++.-++..++|+++++..     +++.+...|.........+.|
T Consensus       146 ~~pg~~VLD~CAaPGGKT~~la~~~-~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~f  224 (359)
T 4fzv_A          146 LQPGDIVLDLCAAPGGKTLALLQTG-CCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTY  224 (359)
T ss_dssp             CCTTEEEEESSCTTCHHHHHHHHTT-CEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCE
T ss_pred             CCCCCEEEEecCCccHHHHHHHHhc-CCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccC
Confidence            3457799999999999999999864 6678999999999999999999998763     358899988765433234689


Q ss_pred             eEEEEcCCCCCCCCcccchhhhcccCccccccCCC---CcHHHH-HHHHHHHhcccccCcEEEEEEC---CcCcHHHHHH
Q 017476          268 SGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGV---DGLDYL-LHLCNGTASMLKPGGFFAFETN---GEKQCKFLKN  340 (371)
Q Consensus       268 DlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~---dGl~~~-~~il~~a~~~LkpgG~lvle~~---~~~q~~~v~~  340 (371)
                      |.|+.++|+.....      .+.+.+|........   ..+..+ +.+++.+.++|||||+|++.+-   .....+.|..
T Consensus       225 D~VLlDaPCSg~g~------g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~ENE~vV~~  298 (359)
T 4fzv_A          225 DRVLVDVPCTTDRH------SLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVVQG  298 (359)
T ss_dssp             EEEEEECCCCCHHH------HTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTTTTHHHHHH
T ss_pred             CEEEECCccCCCCC------cccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchhhCHHHHHH
Confidence            99999999864210      011111111110000   012222 4799999999999999999873   3344555666


Q ss_pred             HHhc
Q 017476          341 YLEN  344 (371)
Q Consensus       341 ~l~~  344 (371)
                      +|++
T Consensus       299 ~L~~  302 (359)
T 4fzv_A          299 AIEL  302 (359)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6653

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=99.00  E-value=3.1e-10  Score=105.78  Aligned_cols=91  Identities=16%  Similarity=0.175  Sum_probs=65.7

Q ss_pred             HHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcc
Q 017476          178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF  257 (371)
Q Consensus       178 ~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~  257 (371)
                      .+++.+++.+    ...++.+|||+|||+|.++. +++ . ...+|+|+|+|+.+++.+++|+...   ++++++++|+.
T Consensus         8 ~i~~~iv~~~----~~~~~~~VLEIG~G~G~lt~-l~~-~-~~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~~   77 (252)
T 1qyr_A            8 FVIDSIVSAI----NPQKGQAMVEIGPGLAALTE-PVG-E-RLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAM   77 (252)
T ss_dssp             HHHHHHHHHH----CCCTTCCEEEECCTTTTTHH-HHH-T-TCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGG
T ss_pred             HHHHHHHHhc----CCCCcCEEEEECCCCcHHHH-hhh-C-CCCeEEEEECCHHHHHHHHHHhccC---CceEEEECchh
Confidence            3455555554    23346789999999999999 654 2 3334999999999999999887542   36999999997


Q ss_pred             cc-cccC---CCceeEEEEcCCCCC
Q 017476          258 GK-LKDV---EGKLSGVVSNPPYIP  278 (371)
Q Consensus       258 ~~-l~~~---~~~fDlIvsNPPYi~  278 (371)
                      +. +...   .+..|.||+|+||..
T Consensus        78 ~~~~~~~~~~~~~~~~vvsNlPY~i  102 (252)
T 1qyr_A           78 TFNFGELAEKMGQPLRVFGNLPYNI  102 (252)
T ss_dssp             GCCHHHHHHHHTSCEEEEEECCTTT
T ss_pred             hCCHHHhhcccCCceEEEECCCCCc
Confidence            63 2211   124589999999964

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.98  E-value=1.1e-10  Score=109.48  Aligned_cols=142  Identities=10%  Similarity=-0.043  Sum_probs=86.6

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH-cCCCCcEEEE--EcCcccccccCCCceeEEE
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR-YGLQDIIEIR--QGSWFGKLKDVEGKLSGVV  271 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~-~gl~~~v~~~--~gD~~~~l~~~~~~fDlIv  271 (371)
                      ++.+|||+|||+|.++..+++.    .+|+|||+++ ++..++++... .....++.++  ++|+.+ ++  .++||+|+
T Consensus        74 ~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~-l~--~~~fD~V~  145 (265)
T 2oxt_A           74 LTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHT-LP--VERTDVIM  145 (265)
T ss_dssp             CCEEEEEESCTTSHHHHHHHTS----TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTT-SC--CCCCSEEE
T ss_pred             CCCEEEEeCcCCCHHHHHHHHc----CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhH-CC--CCCCcEEE
Confidence            4679999999999999998874    6899999999 43322211000 0011158899  999876 33  36899999


Q ss_pred             EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHH--HHHHHHhcccccCc--EEEEEECCcCcHHHHHHHHhcccc
Q 017476          272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLL--HLCNGTASMLKPGG--FFAFETNGEKQCKFLKNYLENDSA  347 (371)
Q Consensus       272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~--~il~~a~~~LkpgG--~lvle~~~~~q~~~v~~~l~~~~~  347 (371)
                      ||...+.. .     .                ..+..+  .+++.+.++|+|||  .+++.+..... ..+.+++... .
T Consensus       146 sd~~~~~~-~-----~----------------~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~~~-~~~~~~l~~l-~  201 (265)
T 2oxt_A          146 CDVGESSP-K-----W----------------SVESERTIKILELLEKWKVKNPSADFVVKVLCPYS-VEVMERLSVM-Q  201 (265)
T ss_dssp             ECCCCCCS-C-----H----------------HHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCTTS-HHHHHHHHHH-H
T ss_pred             EeCcccCC-c-----c----------------chhHHHHHHHHHHHHHHhccCCCeEEEEEeCCCCC-hhHHHHHHHH-H
Confidence            97542211 0     0                011111  26788889999999  99997744333 3222332221 1


Q ss_pred             CCceeEEEEecC---CCCceEEEE
Q 017476          348 CSFCNVSIVSDF---AGIQRFVTG  368 (371)
Q Consensus       348 ~gf~~v~~~~Dl---~g~~R~~~a  368 (371)
                      ..|..+.+.+..   ...+.++++
T Consensus       202 ~~f~~v~~~k~~sR~~s~E~y~v~  225 (265)
T 2oxt_A          202 RKWGGGLVRNPYSRNSTHEMYFTS  225 (265)
T ss_dssp             HHHCCEEECCTTSCTTCCCEEEES
T ss_pred             HHcCCEEEEEecccCCCccEEEEe
Confidence            236677777644   344555544

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.96  E-value=2.3e-08  Score=94.84  Aligned_cols=152  Identities=16%  Similarity=0.174  Sum_probs=107.5

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc--C-C-CCcEEEEEcCcccccccCCCceeEE
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY--G-L-QDIIEIRQGSWFGKLKDVEGKLSGV  270 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~--g-l-~~~v~~~~gD~~~~l~~~~~~fDlI  270 (371)
                      .+++||=+|-|.|..+..+++. .+..+|+.|||++..+++|++-+...  + + ..|++++.+|..+.+....++||+|
T Consensus        83 ~pk~VLIiGgGdG~~~revlk~-~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI  161 (294)
T 3o4f_A           83 HAKHVLIIGGGDGAMLREVTRH-KNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI  161 (294)
T ss_dssp             CCCEEEEESCTTSHHHHHHHTC-TTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred             CCCeEEEECCCchHHHHHHHHc-CCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence            4679999999999999999986 35679999999999999999876432  2 1 4589999999999887777899999


Q ss_pred             EEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC-CcCcHHHHHHHHhccccCC
Q 017476          271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN-GEKQCKFLKNYLENDSACS  349 (371)
Q Consensus       271 vsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~-~~~q~~~v~~~l~~~~~~g  349 (371)
                      |.+.+-...              |...|.        -+.+++.+.+.|+|||+++...+ ...+.+.+..+++.. ..-
T Consensus       162 i~D~~dp~~--------------~~~~L~--------t~eFy~~~~~~L~p~Gv~v~q~~sp~~~~~~~~~~~~~l-~~~  218 (294)
T 3o4f_A          162 ISDCTDPIG--------------PGESLF--------TSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKL-SHY  218 (294)
T ss_dssp             EESCCCCCC--------------TTCCSS--------CCHHHHHHHHTEEEEEEEEEEEEESSSCCHHHHHHHHHH-HHH
T ss_pred             EEeCCCcCC--------------Cchhhc--------CHHHHHHHHHHhCCCCEEEEecCCcccChHHHHHHHHHH-Hhh
Confidence            997542110              011111        12678888999999999999653 222334444444332 123


Q ss_pred             ceeEEEEec----C-CCCceEEEEEe
Q 017476          350 FCNVSIVSD----F-AGIQRFVTGFR  370 (371)
Q Consensus       350 f~~v~~~~D----l-~g~~R~~~a~~  370 (371)
                      |..+..+.-    + .|..-|++|.+
T Consensus       219 F~~v~~~~~~vPty~~g~w~f~~as~  244 (294)
T 3o4f_A          219 FSDVGFYQAAIPTYYGGIMTFAWATD  244 (294)
T ss_dssp             CSEEEEEEECCTTSSSSCEEEEEEES
T ss_pred             CCceeeeeeeeccCCCcceeheeEEC
Confidence            777766533    2 57777887764

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.95  E-value=4.2e-09  Score=109.60  Aligned_cols=104  Identities=21%  Similarity=0.181  Sum_probs=75.9

Q ss_pred             CCCeEEEECCcccHH---HHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEE
Q 017476          195 RDGFWVDLGTGSGAI---AIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV  271 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~---al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIv  271 (371)
                      ....|+|+|||+|-+   ++.++++.+...+|+|||.|+. ...|+++.+.+++.++|++++||+.+.-  +.+++|+||
T Consensus       357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~-A~~a~~~v~~N~~~dkVtVI~gd~eev~--LPEKVDIIV  433 (637)
T 4gqb_A          357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN-AVVTLENWQFEEWGSQVTVVSSDMREWV--APEKADIIV  433 (637)
T ss_dssp             CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH-HHHHHHHHHHHTTGGGEEEEESCTTTCC--CSSCEEEEE
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH-HHHHHHHHHhccCCCeEEEEeCcceecc--CCcccCEEE
Confidence            446899999999988   5555554322347999999984 5689999999999999999999997642  237999999


Q ss_pred             EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEE
Q 017476          272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFF  325 (371)
Q Consensus       272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~l  325 (371)
                      |-           +......+|          ++  + ..+....++|||||.+
T Consensus       434 SE-----------wMG~fLl~E----------~m--l-evL~Ardr~LKPgGim  463 (637)
T 4gqb_A          434 SE-----------LLGSFADNE----------LS--P-ECLDGAQHFLKDDGVS  463 (637)
T ss_dssp             CC-----------CCBTTBGGG----------CH--H-HHHHHHGGGEEEEEEE
T ss_pred             EE-----------cCccccccc----------CC--H-HHHHHHHHhcCCCcEE
Confidence            81           122222222          22  2 4667788999999975

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.92  E-value=2.8e-09  Score=100.28  Aligned_cols=111  Identities=13%  Similarity=0.156  Sum_probs=76.5

Q ss_pred             CeEEEECCcc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc---ccC--CCcee-
Q 017476          197 GFWVDLGTGS--GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL---KDV--EGKLS-  268 (371)
Q Consensus       197 ~~VLDlG~Gs--G~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l---~~~--~~~fD-  268 (371)
                      .+|||||||+  +.....++++..|+++|++||.|+.|++.|++++...+ ..+++++++|+.+..   ...  .+.|| 
T Consensus        80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-~~~~~~v~aD~~~~~~~l~~~~~~~~~D~  158 (277)
T 3giw_A           80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-EGRTAYVEADMLDPASILDAPELRDTLDL  158 (277)
T ss_dssp             CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-SSEEEEEECCTTCHHHHHTCHHHHTTCCT
T ss_pred             CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-CCcEEEEEecccChhhhhcccccccccCc
Confidence            5899999997  44445555554588999999999999999999876443 246999999997641   100  13455 


Q ss_pred             ----EEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC
Q 017476          269 ----GVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG  331 (371)
Q Consensus       269 ----lIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~  331 (371)
                          .|++|-              +..|-+..         +....+++.+.+.|+|||+|++.+..
T Consensus       159 ~~p~av~~~a--------------vLH~l~d~---------~~p~~~l~~l~~~L~PGG~Lvls~~~  202 (277)
T 3giw_A          159 TRPVALTVIA--------------IVHFVLDE---------DDAVGIVRRLLEPLPSGSYLAMSIGT  202 (277)
T ss_dssp             TSCCEEEEES--------------CGGGSCGG---------GCHHHHHHHHHTTSCTTCEEEEEEEC
T ss_pred             CCcchHHhhh--------------hHhcCCch---------hhHHHHHHHHHHhCCCCcEEEEEecc
Confidence                466652              22222211         11236888889999999999998743

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.92  E-value=1.9e-10  Score=108.62  Aligned_cols=131  Identities=12%  Similarity=-0.027  Sum_probs=81.4

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH-HcCCCCcEEEE--EcCcccccccCCCceeEEE
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ-RYGLQDIIEIR--QGSWFGKLKDVEGKLSGVV  271 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~-~~gl~~~v~~~--~gD~~~~l~~~~~~fDlIv  271 (371)
                      ++.+|||+|||+|.++..+++.    .+|+|||+++ ++..|+++.. ......++.++  ++|+.+ ++  .++||+|+
T Consensus        82 ~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~-l~--~~~fD~Vv  153 (276)
T 2wa2_A           82 LKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTK-ME--PFQADTVL  153 (276)
T ss_dssp             CCEEEEEESCTTCHHHHHHHTS----TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGG-CC--CCCCSEEE
T ss_pred             CCCEEEEeccCCCHHHHHHHHc----CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhh-CC--CCCcCEEE
Confidence            4679999999999999999874    5899999999 5333322110 00111158999  999865 33  36899999


Q ss_pred             EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHH--HHHHHHhcccccCc--EEEEEECCcCcHHHHHHHHhcccc
Q 017476          272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLL--HLCNGTASMLKPGG--FFAFETNGEKQCKFLKNYLENDSA  347 (371)
Q Consensus       272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~--~il~~a~~~LkpgG--~lvle~~~~~q~~~v~~~l~~~~~  347 (371)
                      ||...+...      ..                .+..+  .+++.+.++|+|||  .+++.+..... ..+.+++... .
T Consensus       154 sd~~~~~~~------~~----------------~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~~~~-~~~~~~l~~l-~  209 (276)
T 2wa2_A          154 CDIGESNPT------AA----------------VEASRTLTVLNVISRWLEYNQGCGFCVKVLNPYS-CDVLEALMKM-Q  209 (276)
T ss_dssp             ECCCCCCSC------HH----------------HHHHHHHHHHHHHHHHHHHSTTCEEEEEESCCCS-HHHHHHHHHH-H
T ss_pred             ECCCcCCCc------hh----------------hhHHHHHHHHHHHHHHhccCCCcEEEEEeCCCCc-hhHHHHHHHH-H
Confidence            985522110      00                11111  26788889999999  99887644333 3222222221 1


Q ss_pred             CCceeEEEEe
Q 017476          348 CSFCNVSIVS  357 (371)
Q Consensus       348 ~gf~~v~~~~  357 (371)
                      ..|..+.+.+
T Consensus       210 ~~f~~v~v~P  219 (276)
T 2wa2_A          210 ARFGGGLIRV  219 (276)
T ss_dssp             HHHCCEEECC
T ss_pred             HHcCCEEEEc
Confidence            2366777763

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.92  E-value=5.3e-09  Score=97.66  Aligned_cols=145  Identities=17%  Similarity=0.242  Sum_probs=100.1

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh------CCC-----cEEEEEeCCH---HHHH-----------HHHHHHHHc------
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL------GSK-----GSIIAVDLNP---LAAA-----------VAAFNAQRY------  243 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~------~~~-----~~V~gvDis~---~al~-----------~A~~n~~~~------  243 (371)
                      ++.+|||+|+|+|..++.+++.+      .|+     .+++++|..+   +.+.           .|+++++..      
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            34689999999999998887754      453     5899999887   4443           667776541      


Q ss_pred             ----CCC---CcEEEEEcCcccccccCCC----ceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHH
Q 017476          244 ----GLQ---DIIEIRQGSWFGKLKDVEG----KLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLC  312 (371)
Q Consensus       244 ----gl~---~~v~~~~gD~~~~l~~~~~----~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il  312 (371)
                          .+.   .+++++.||+.+.++...+    .||+|+.++ |.+...     ++.  |               ...++
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~-fsp~~~-----p~l--w---------------~~~~l  196 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDG-FAPAKN-----PDM--W---------------TQNLF  196 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECS-SCTTTC-----GGG--C---------------CHHHH
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECC-CCcccC-----hhh--c---------------CHHHH
Confidence                121   3588999999876665433    799999975 322211     110  1               12678


Q ss_pred             HHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEecCCCCceEEEEEe
Q 017476          313 NGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFR  370 (371)
Q Consensus       313 ~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~~  370 (371)
                      +.+.+.|+|||+|+.-.    ....|++.|.+   .||. |+..+-..++..++.|.|
T Consensus       197 ~~l~~~L~pGG~l~tys----aa~~vrr~L~~---aGF~-v~~~~g~~~kr~m~~a~~  246 (257)
T 2qy6_A          197 NAMARLARPGGTLATFT----SAGFVRRGLQE---AGFT-MQKRKGFGRKREMLCGVM  246 (257)
T ss_dssp             HHHHHHEEEEEEEEESC----CBHHHHHHHHH---HTEE-EEEECCSTTCCCEEEEEE
T ss_pred             HHHHHHcCCCcEEEEEe----CCHHHHHHHHH---CCCE-EEeCCCCCCCCceEEEEe
Confidence            88899999999988533    23467877775   6895 666666777777888876

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.92  E-value=5.9e-10  Score=115.35  Aligned_cols=74  Identities=20%  Similarity=0.207  Sum_probs=62.6

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc-cCCCceeEEEE
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-DVEGKLSGVVS  272 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~-~~~~~fDlIvs  272 (371)
                      ++.+|||+|||.|.++..||+.   +++|+|||+++.+++.|+..+...|.- ++++.++++.+... ...++||+|+|
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~---ga~V~giD~~~~~i~~a~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~v~~  140 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASK---GATIVGIDFQQENINVCRALAEENPDF-AAEFRVGRIEEVIAALEEGEFDLAIG  140 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHTSTTS-EEEEEECCHHHHHHHCCTTSCSEEEE
T ss_pred             CCCeEEEECCCCcHHHHHHHhC---CCEEEEECCCHHHHHHHHHHHHhcCCC-ceEEEECCHHHHhhhccCCCccEEEE
Confidence            4569999999999999999984   689999999999999999999887744 39999999865322 12478999999

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.88  E-value=6.6e-10  Score=102.17  Aligned_cols=98  Identities=14%  Similarity=0.134  Sum_probs=65.4

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-Cccccc-ccCCC-ceeEEE
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG-SWFGKL-KDVEG-KLSGVV  271 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~g-D~~~~l-~~~~~-~fDlIv  271 (371)
                      .+.+|||+|||+|.++..+++.  ...+|+|+|+|+.|++.|++|..+      +..... ++.... ..... .||.+.
T Consensus        37 ~g~~VLDiGcGtG~~t~~la~~--g~~~V~gvDis~~ml~~a~~~~~~------~~~~~~~~~~~~~~~~~~~~~~d~~~  108 (232)
T 3opn_A           37 NGKTCLDIGSSTGGFTDVMLQN--GAKLVYALDVGTNQLAWKIRSDER------VVVMEQFNFRNAVLADFEQGRPSFTS  108 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT--TCSEEEEECSSCCCCCHHHHTCTT------EEEECSCCGGGCCGGGCCSCCCSEEE
T ss_pred             CCCEEEEEccCCCHHHHHHHhc--CCCEEEEEcCCHHHHHHHHHhCcc------ccccccceEEEeCHhHcCcCCCCEEE
Confidence            4669999999999999999985  335999999999999998776432      222211 111000 01111 356666


Q ss_pred             EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      ++..|+..                             ..++..+.+.|||||.+++.+
T Consensus       109 ~D~v~~~l-----------------------------~~~l~~i~rvLkpgG~lv~~~  137 (232)
T 3opn_A          109 IDVSFISL-----------------------------DLILPPLYEILEKNGEVAALI  137 (232)
T ss_dssp             ECCSSSCG-----------------------------GGTHHHHHHHSCTTCEEEEEE
T ss_pred             EEEEhhhH-----------------------------HHHHHHHHHhccCCCEEEEEE
Confidence            65444320                             257788899999999999864

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.88  E-value=7.9e-09  Score=95.27  Aligned_cols=72  Identities=10%  Similarity=-0.064  Sum_probs=62.2

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      ..+.+|||+|||+|-+++.+.    +..+++|+|+|+.+++.+++|+..++.  ...+..+|......  .++||+|++|
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~----~~~~y~a~DId~~~i~~ar~~~~~~g~--~~~~~v~D~~~~~~--~~~~DvvLll  175 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER----GIASVWGCDIHQGLGDVITPFAREKDW--DFTFALQDVLCAPP--AEAGDLALIF  175 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT----TCSEEEEEESBHHHHHHHHHHHHHTTC--EEEEEECCTTTSCC--CCBCSEEEEE
T ss_pred             CCCCeEEEecCCccHHHHHhc----cCCeEEEEeCCHHHHHHHHHHHHhcCC--CceEEEeecccCCC--CCCcchHHHH
Confidence            357799999999999999876    568999999999999999999999884  38999999876543  3699999985

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.87  E-value=4.2e-09  Score=100.00  Aligned_cols=97  Identities=20%  Similarity=0.144  Sum_probs=67.9

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE-EcCccccc-ccC-CCceeEEE
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIR-QGSWFGKL-KDV-EGKLSGVV  271 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~-~gD~~~~l-~~~-~~~fDlIv  271 (371)
                      .+.+|||+|||||.++..+++.  +..+|+|||+|+.|++.+.++-      .++... ..|+.... ..+ ...||+|+
T Consensus        85 ~g~~vLDiGcGTG~~t~~L~~~--ga~~V~aVDvs~~mL~~a~r~~------~rv~~~~~~ni~~l~~~~l~~~~fD~v~  156 (291)
T 3hp7_A           85 EDMITIDIGASTGGFTDVMLQN--GAKLVYAVDVGTNQLVWKLRQD------DRVRSMEQYNFRYAEPVDFTEGLPSFAS  156 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT--TCSEEEEECSSSSCSCHHHHTC------TTEEEECSCCGGGCCGGGCTTCCCSEEE
T ss_pred             cccEEEecCCCccHHHHHHHhC--CCCEEEEEECCHHHHHHHHHhC------cccceecccCceecchhhCCCCCCCEEE
Confidence            4679999999999999999885  4569999999999999865431      234333 23332111 111 23499999


Q ss_pred             EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476          272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE  328 (371)
Q Consensus       272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle  328 (371)
                      +|--|+.                             +..++..+.++|+|||.+++.
T Consensus       157 ~d~sf~s-----------------------------l~~vL~e~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          157 IDVSFIS-----------------------------LNLILPALAKILVDGGQVVAL  184 (291)
T ss_dssp             ECCSSSC-----------------------------GGGTHHHHHHHSCTTCEEEEE
T ss_pred             EEeeHhh-----------------------------HHHHHHHHHHHcCcCCEEEEE
Confidence            9754431                             125777888999999999886

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.86  E-value=1.1e-09  Score=104.78  Aligned_cols=128  Identities=15%  Similarity=0.145  Sum_probs=80.5

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeC----CHHHHHHHHHHHHHcCCCCcEEEEEc-CcccccccCCCceeE
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDL----NPLAAAVAAFNAQRYGLQDIIEIRQG-SWFGKLKDVEGKLSG  269 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDi----s~~al~~A~~n~~~~gl~~~v~~~~g-D~~~~l~~~~~~fDl  269 (371)
                      ++.+|||+|||+|.++..+++.    ++|+|||+    ++.+++.+.  .+..+ .+++.++++ |+.+. +  .++||+
T Consensus        82 ~g~~VLDlGcG~G~~s~~la~~----~~V~gvD~~~~~~~~~~~~~~--~~~~~-~~~v~~~~~~D~~~l-~--~~~fD~  151 (305)
T 2p41_A           82 PEGKVVDLGCGRGGWSYYCGGL----KNVREVKGLTKGGPGHEEPIP--MSTYG-WNLVRLQSGVDVFFI-P--PERCDT  151 (305)
T ss_dssp             CCEEEEEETCTTSHHHHHHHTS----TTEEEEEEECCCSTTSCCCCC--CCSTT-GGGEEEECSCCTTTS-C--CCCCSE
T ss_pred             CCCEEEEEcCCCCHHHHHHHhc----CCEEEEeccccCchhHHHHHH--hhhcC-CCCeEEEeccccccC-C--cCCCCE
Confidence            4579999999999999999874    47999999    554332111  11112 145999999 88653 2  368999


Q ss_pred             EEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHH--HHHHHHHhcccccCcEEEEEECCcC--cHHHHHHHHhcc
Q 017476          270 VVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYL--LHLCNGTASMLKPGGFFAFETNGEK--QCKFLKNYLEND  345 (371)
Q Consensus       270 IvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~--~~il~~a~~~LkpgG~lvle~~~~~--q~~~v~~~l~~~  345 (371)
                      |+||-+.. ...          +.           .+..  ..++..+.++|||||.+++.+....  ....+...++. 
T Consensus       152 V~sd~~~~-~g~----------~~-----------~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~~~~~~~~~l~~l~~-  208 (305)
T 2p41_A          152 LLCDIGES-SPN----------PT-----------VEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQR-  208 (305)
T ss_dssp             EEECCCCC-CSS----------HH-----------HHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHHH-
T ss_pred             EEECCccc-cCc----------ch-----------hhHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCchHHHHHHHHHH-
Confidence            99985542 111          00           1111  1467788899999999999774332  22233444442 


Q ss_pred             ccCCceeEEEEec
Q 017476          346 SACSFCNVSIVSD  358 (371)
Q Consensus       346 ~~~gf~~v~~~~D  358 (371)
                         .|..+.+.+.
T Consensus       209 ---~f~~v~~~kP  218 (305)
T 2p41_A          209 ---KHGGALVRNP  218 (305)
T ss_dssp             ---HHCCEEECCT
T ss_pred             ---HcCCEEEecC
Confidence               2666666554

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.78  E-value=5.8e-08  Score=87.36  Aligned_cols=113  Identities=10%  Similarity=0.003  Sum_probs=81.7

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC--CCcEEEEEcCcccc--------------
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGL--QDIIEIRQGSWFGK--------------  259 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl--~~~v~~~~gD~~~~--------------  259 (371)
                      .++|||+|||  .-++.+|+.  ++++|+.+|.+++..+.|++|+++.|+  .++|+++.+|..+.              
T Consensus        31 a~~VLEiGtG--ySTl~lA~~--~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~  106 (202)
T 3cvo_A           31 AEVILEYGSG--GSTVVAAEL--PGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRS  106 (202)
T ss_dssp             CSEEEEESCS--HHHHHHHTS--TTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGG
T ss_pred             CCEEEEECch--HHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhh
Confidence            4599999985  677777773  478999999999999999999999998  88999999996543              


Q ss_pred             cc-------cC--CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE-
Q 017476          260 LK-------DV--EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET-  329 (371)
Q Consensus       260 l~-------~~--~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~-  329 (371)
                      ++       ..  .++||+|+.+-.                           .+.    ..+..+.++|+|||++++.. 
T Consensus       107 l~~~~~~i~~~~~~~~fDlIfIDg~---------------------------k~~----~~~~~~l~~l~~GG~Iv~DNv  155 (202)
T 3cvo_A          107 YPDYPLAVWRTEGFRHPDVVLVDGR---------------------------FRV----GCALATAFSITRPVTLLFDDY  155 (202)
T ss_dssp             TTHHHHGGGGCTTCCCCSEEEECSS---------------------------SHH----HHHHHHHHHCSSCEEEEETTG
T ss_pred             HHHHhhhhhccccCCCCCEEEEeCC---------------------------Cch----hHHHHHHHhcCCCeEEEEeCC
Confidence            11       11  267999998311                           111    23344568999999996643 


Q ss_pred             CCcCcHHHHHHHHh
Q 017476          330 NGEKQCKFLKNYLE  343 (371)
Q Consensus       330 ~~~~q~~~v~~~l~  343 (371)
                      -.......+.+++.
T Consensus       156 ~~r~~y~~v~~~~~  169 (202)
T 3cvo_A          156 SQRRWQHQVEEFLG  169 (202)
T ss_dssp             GGCSSGGGGHHHHC
T ss_pred             cCCcchHHHHHHHh
Confidence            12334556677765

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.70  E-value=2.5e-07  Score=90.50  Aligned_cols=158  Identities=16%  Similarity=0.215  Sum_probs=103.9

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc---CC----CCcEEEEEcCccccccc---CC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY---GL----QDIIEIRQGSWFGKLKD---VE  264 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~---gl----~~~v~~~~gD~~~~l~~---~~  264 (371)
                      ++++||=+|-|.|..+..+.+.  +..+|+.|||++..+++|++.+...   .+    .++++++.+|..+.+..   ..
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh--~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~  282 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKL--KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG  282 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTT--CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCcHHHHHHHHhc--CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhcc
Confidence            4679999999999999999885  4579999999999999999864211   11    13589999999877642   24


Q ss_pred             CceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhc
Q 017476          265 GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLEN  344 (371)
Q Consensus       265 ~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~  344 (371)
                      ++||+||.+.+=.+.....        ..|        .-..+.+.+++.+.+.|+|||+++...+.....+.+..+.+.
T Consensus       283 ~~yDvIIvDl~D~~~s~~p--------~g~--------a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~~~~~~~i~~t  346 (381)
T 3c6k_A          283 REFDYVINDLTAVPISTSP--------EED--------STWEFLRLILDLSMKVLKQDGKYFTQGNCVNLTEALSLYEEQ  346 (381)
T ss_dssp             CCEEEEEEECCSSCCCCC--------------------CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTCHHHHHHHHHH
T ss_pred             CceeEEEECCCCCcccCcc--------cCc--------chHHHHHHHHHHHHHhcCCCCEEEEecCCCcchhHHHHHHHH
Confidence            6899999974321110000        000        012345689999999999999999865433333333333222


Q ss_pred             cccCCceeEEEE------ecCCCCceEEEEEeC
Q 017476          345 DSACSFCNVSIV------SDFAGIQRFVTGFRQ  371 (371)
Q Consensus       345 ~~~~gf~~v~~~------~Dl~g~~R~~~a~~~  371 (371)
                      . ..-|..+.+.      +-+.|..-|++|.|+
T Consensus       347 l-~~vF~~v~~~~~~~~VPSy~~~W~F~~aSK~  378 (381)
T 3c6k_A          347 L-GRLYCPVEFSKEIVCVPSYLELWVFYTVWKK  378 (381)
T ss_dssp             H-TTSSSCEEEEEEEECCGGGSSCEEEEEEEEC
T ss_pred             H-HHhCCcceEeeEEEEecCCCCceeeeEEECC
Confidence            2 1335555432      446677788888774

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.64  E-value=3.5e-08  Score=85.59  Aligned_cols=106  Identities=14%  Similarity=0.018  Sum_probs=75.6

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc--cCCCceeEEE
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK--DVEGKLSGVV  271 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~--~~~~~fDlIv  271 (371)
                      .++.+|||+|||.                 +++|+|+.|++.|+++..     .+++++++|+.+...  ...++||+|+
T Consensus        11 ~~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~-----~~~~~~~~d~~~~~~~~~~~~~fD~V~   68 (176)
T 2ld4_A           11 SAGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTG-----NEGRVSVENIKQLLQSAHKESSFDIIL   68 (176)
T ss_dssp             CTTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTT-----TTSEEEEEEGGGGGGGCCCSSCEEEEE
T ss_pred             CCCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhcc-----cCcEEEEechhcCccccCCCCCEeEEE
Confidence            4577999999996                 238999999999998753     238999999865322  1357899999


Q ss_pred             EcCCCCCCCCcccchhhhcccC-ccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCc---------CcHHHHHHH
Q 017476          272 SNPPYIPSDDISGLQVEVGKHE-PRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGE---------KQCKFLKNY  341 (371)
Q Consensus       272 sNPPYi~~~~~~~l~~ev~~~e-p~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~---------~q~~~v~~~  341 (371)
                      ++--..              |- +.            ...+++++.+.|||||++++.+...         ...+.+.+.
T Consensus        69 ~~~~l~--------------~~~~~------------~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~  122 (176)
T 2ld4_A           69 SGLVPG--------------STTLH------------SAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSA  122 (176)
T ss_dssp             ECCSTT--------------CCCCC------------CHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHH
T ss_pred             ECChhh--------------hcccC------------HHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHH
Confidence            952211              11 11            1378889999999999999975311         125677888


Q ss_pred             HhccccCCc
Q 017476          342 LENDSACSF  350 (371)
Q Consensus       342 l~~~~~~gf  350 (371)
                      +++   .||
T Consensus       123 l~~---aGf  128 (176)
T 2ld4_A          123 LTL---SGL  128 (176)
T ss_dssp             HHH---TTC
T ss_pred             HHH---CCC
Confidence            875   789

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.64  E-value=6.2e-08  Score=101.14  Aligned_cols=105  Identities=19%  Similarity=0.126  Sum_probs=71.1

Q ss_pred             CCeEEEECCcccHHHHH---HHHHhC---------CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc--
Q 017476          196 DGFWVDLGTGSGAIAIG---IARVLG---------SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK--  261 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~---la~~~~---------~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~--  261 (371)
                      ...|||+|||+|.+...   +++..+         ...+|+|||.|+.+...++... .+++.++|+++++|+.+.-.  
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~-~Ng~~d~VtVI~gd~eev~lp~  488 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMN-VRTWKRRVTIIESDMRSLPGIA  488 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHH-HHTTTTCSEEEESCGGGHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHH-hcCCCCeEEEEeCchhhccccc
Confidence            45899999999999643   332221         2349999999998876555544 48999999999999976422  


Q ss_pred             --cCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEE
Q 017476          262 --DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFF  325 (371)
Q Consensus       262 --~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~l  325 (371)
                        ...+++|+|||-.           ......+|             ...+.+..+.++|||||.+
T Consensus       489 ~~~~~ekVDIIVSEl-----------mGsfl~nE-------------L~pe~Ld~v~r~Lkp~Gi~  530 (745)
T 3ua3_A          489 KDRGFEQPDIIVSEL-----------LGSFGDNE-------------LSPECLDGVTGFLKPTTIS  530 (745)
T ss_dssp             HHTTCCCCSEEEECC-----------CBTTBGGG-------------SHHHHHHTTGGGSCTTCEE
T ss_pred             ccCCCCcccEEEEec-----------cccccchh-------------ccHHHHHHHHHhCCCCcEE
Confidence              0137999999921           11111111             1235666677899999975

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.64  E-value=1.7e-07  Score=88.50  Aligned_cols=122  Identities=14%  Similarity=0.141  Sum_probs=91.2

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhC----CCcEEEEEeCCH--------------------------HHHHHHHHHHHHcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLG----SKGSIIAVDLNP--------------------------LAAAVAAFNAQRYG  244 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~----~~~~V~gvDis~--------------------------~al~~A~~n~~~~g  244 (371)
                      .++.|||+||..|..++.++..+.    ++.+|+++|..+                          ..++.+++|+++.|
T Consensus       106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g  185 (282)
T 2wk1_A          106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD  185 (282)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred             CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence            467999999999999999887652    367899999642                          14678999999999


Q ss_pred             CC-CcEEEEEcCcccccccC-CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccC
Q 017476          245 LQ-DIIEIRQGSWFGKLKDV-EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPG  322 (371)
Q Consensus       245 l~-~~v~~~~gD~~~~l~~~-~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~Lkpg  322 (371)
                      +. ++++++.||+.+.++.. .++||+|+.+     .                       |-.+.+...++.+...|+||
T Consensus       186 l~~~~I~li~Gda~etL~~~~~~~~d~vfID-----a-----------------------D~y~~~~~~Le~~~p~L~pG  237 (282)
T 2wk1_A          186 LLDEQVRFLPGWFKDTLPTAPIDTLAVLRMD-----G-----------------------DLYESTWDTLTNLYPKVSVG  237 (282)
T ss_dssp             CCSTTEEEEESCHHHHSTTCCCCCEEEEEEC-----C-----------------------CSHHHHHHHHHHHGGGEEEE
T ss_pred             CCcCceEEEEeCHHHHHhhCCCCCEEEEEEc-----C-----------------------CccccHHHHHHHHHhhcCCC
Confidence            94 78999999998877654 3689999973     0                       01234557788899999999


Q ss_pred             cEEEEEECCc--CcHHHHHHHHhc
Q 017476          323 GFFAFETNGE--KQCKFLKNYLEN  344 (371)
Q Consensus       323 G~lvle~~~~--~q~~~v~~~l~~  344 (371)
                      |++++.--++  ...+++.+++++
T Consensus       238 GiIv~DD~~~~~G~~~Av~Ef~~~  261 (282)
T 2wk1_A          238 GYVIVDDYMMCPPCKDAVDEYRAK  261 (282)
T ss_dssp             EEEEESSCTTCHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHh
Confidence            9999855332  233456666654

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.57  E-value=7e-08  Score=81.93  Aligned_cols=84  Identities=15%  Similarity=0.133  Sum_probs=62.0

Q ss_pred             cccccc--hHHHHHHHHHHHhhhcCCCCCCCeEEEECCccc-HHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC
Q 017476          169 VFIPRP--ETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSG-AIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGL  245 (371)
Q Consensus       169 vliPrp--~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG-~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl  245 (371)
                      -++|+.  --|.+++.+.+..      ..+.+|||+|||+| ..+..|++.  .+..|+++|+++.+++           
T Consensus        13 ~~~~~~~~m~e~LaeYI~~~~------~~~~rVlEVG~G~g~~vA~~La~~--~g~~V~atDInp~Av~-----------   73 (153)
T 2k4m_A           13 GLVPRGSHMWNDLAVYIIRCS------GPGTRVVEVGAGRFLYVSDYIRKH--SKVDLVLTDIKPSHGG-----------   73 (153)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHS------CSSSEEEEETCTTCCHHHHHHHHH--SCCEEEEECSSCSSTT-----------
T ss_pred             CcccchhhHHHHHHHHHHhcC------CCCCcEEEEccCCChHHHHHHHHh--CCCeEEEEECCccccc-----------
Confidence            455652  2345555555443      23569999999999 699999985  3678999999998865           


Q ss_pred             CCcEEEEEcCcccccccCCCceeEE-EEcCCC
Q 017476          246 QDIIEIRQGSWFGKLKDVEGKLSGV-VSNPPY  276 (371)
Q Consensus       246 ~~~v~~~~gD~~~~l~~~~~~fDlI-vsNPPY  276 (371)
                           +++.|++++....-+.||+| -.|||-
T Consensus        74 -----~v~dDiF~P~~~~Y~~~DLIYsirPP~  100 (153)
T 2k4m_A           74 -----IVRDDITSPRMEIYRGAALIYSIRPPA  100 (153)
T ss_dssp             -----EECCCSSSCCHHHHTTEEEEEEESCCT
T ss_pred             -----eEEccCCCCcccccCCcCEEEEcCCCH
Confidence                 89999998765433589999 569983

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.37  E-value=2.8e-07  Score=87.44  Aligned_cols=96  Identities=18%  Similarity=0.168  Sum_probs=62.0

Q ss_pred             cEEEEEcCcccccccC-CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEE
Q 017476          248 IIEIRQGSWFGKLKDV-EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFA  326 (371)
Q Consensus       248 ~v~~~~gD~~~~l~~~-~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lv  326 (371)
                      ++++++||+.+.+... +++||+||+||||....+........      .++....++++.+..+++.+.++|+|||.++
T Consensus        21 ~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~------~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~   94 (297)
T 2zig_A           21 VHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQL------GHIEDYEAFLDELDRVWREVFRLLVPGGRLV   94 (297)
T ss_dssp             CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CC------HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             CCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhh------cccccHHHHHHHHHHHHHHHHHHcCCCcEEE
Confidence            4799999998865433 46899999999998654322111110      0111223346667889999999999999999


Q ss_pred             EEECCcC-------------cHHHHHHHHhccccCCcee
Q 017476          327 FETNGEK-------------QCKFLKNYLENDSACSFCN  352 (371)
Q Consensus       327 le~~~~~-------------q~~~v~~~l~~~~~~gf~~  352 (371)
                      ++++...             ....+..++++   .||..
T Consensus        95 i~~~d~~~~~~~~g~~~~~~~~~~l~~~~~~---~Gf~~  130 (297)
T 2zig_A           95 IVVGDVAVARRRFGRHLVFPLHADIQVRCRK---LGFDN  130 (297)
T ss_dssp             EEECCEEEECC----EEEECHHHHHHHHHHH---TTCEE
T ss_pred             EEECCCccccccCCcccccccHHHHHHHHHH---cCCee
Confidence            9995321             12456677775   56754

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.36  E-value=4.5e-07  Score=84.79  Aligned_cols=136  Identities=14%  Similarity=0.029  Sum_probs=80.6

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      +..+|||||||.|.++..+++.. +...|.|+|+..+........ ...+.  ++..+++++ +......++||+|+||-
T Consensus        74 ~~~~VLDLGaAPGGWSQvAa~~~-~~~~v~g~dVGvDl~~~pi~~-~~~g~--~ii~~~~~~-dv~~l~~~~~DlVlsD~  148 (277)
T 3evf_A           74 LEGRVIDLGCGRGGWCYYAAAQK-EVSGVKGFTLGRDGHEKPMNV-QSLGW--NIITFKDKT-DIHRLEPVKCDTLLCDI  148 (277)
T ss_dssp             CCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTCCCCCCC-CBTTG--GGEEEECSC-CTTTSCCCCCSEEEECC
T ss_pred             CCCEEEEecCCCCHHHHHHHHhc-CCCcceeEEEeccCccccccc-CcCCC--CeEEEeccc-eehhcCCCCccEEEecC
Confidence            45689999999999999988752 445788888874421000000 00011  234455554 21112246899999962


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHH--HHHHHHhcccccC-cEEEEEECC--cCcHHHHHHHHhccccCC
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLL--HLCNGTASMLKPG-GFFAFETNG--EKQCKFLKNYLENDSACS  349 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~--~il~~a~~~Lkpg-G~lvle~~~--~~q~~~v~~~l~~~~~~g  349 (371)
                      -  +.                    .|..-.|.++  .+++.+.++|+|| |.+++-+-.  ......+.+.|+.    .
T Consensus       149 a--pn--------------------sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~~~l~~~lk~----~  202 (277)
T 3evf_A          149 G--ES--------------------SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLEKLELLQR----R  202 (277)
T ss_dssp             C--CC--------------------CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHH----H
T ss_pred             c--cC--------------------cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCccHHHHHHHHHH----h
Confidence            1  00                    0111123322  3578889999999 999998833  2233444555553    4


Q ss_pred             ceeEEEEecCCCC
Q 017476          350 FCNVSIVSDFAGI  362 (371)
Q Consensus       350 f~~v~~~~Dl~g~  362 (371)
                      |..|.+.+. +-+
T Consensus       203 F~~V~~~KP-aSR  214 (277)
T 3evf_A          203 FGGTVIRNP-LSR  214 (277)
T ss_dssp             HCCEEECCT-TSC
T ss_pred             cCCEEEEeC-CCC
Confidence            999999887 543

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=98.36  E-value=2.2e-07  Score=87.37  Aligned_cols=76  Identities=17%  Similarity=0.119  Sum_probs=63.9

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---cCCCceeEEEE
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---DVEGKLSGVVS  272 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---~~~~~fDlIvs  272 (371)
                      +..+||+.+|||.+++.+.+   +..+++.||.++.+++..++|++.   .++++++++|.++.+.   ....+||+|+.
T Consensus        92 ~~~~LDlfaGSGaLgiEaLS---~~d~~vfvE~~~~a~~~L~~Nl~~---~~~~~V~~~D~~~~L~~l~~~~~~fdLVfi  165 (283)
T 2oo3_A           92 LNSTLSYYPGSPYFAINQLR---SQDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNALLPPPEKRGLIFI  165 (283)
T ss_dssp             SSSSCCEEECHHHHHHHHSC---TTSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHHHCSCTTSCEEEEE
T ss_pred             CCCceeEeCCcHHHHHHHcC---CCCeEEEEeCCHHHHHHHHHHhCc---CCcEEEEeCcHHHHHHHhcCCCCCccEEEE
Confidence            45789999999999999877   347999999999999999999864   3579999999877553   22347999999


Q ss_pred             cCCCC
Q 017476          273 NPPYI  277 (371)
Q Consensus       273 NPPYi  277 (371)
                      +|||-
T Consensus       166 DPPYe  170 (283)
T 2oo3_A          166 DPSYE  170 (283)
T ss_dssp             CCCCC
T ss_pred             CCCCC
Confidence            99995

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.35  E-value=8.3e-07  Score=83.43  Aligned_cols=87  Identities=23%  Similarity=0.285  Sum_probs=68.3

Q ss_pred             HHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccc
Q 017476          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG  258 (371)
Q Consensus       179 lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~  258 (371)
                      |.+.+++.+    ...+++.++|.+||.|..+..+++.   +++|+|+|.++.|++.|++ +..    ++++++++|+.+
T Consensus        10 Ll~e~le~L----~~~~gg~~VD~T~G~GGHS~~il~~---~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~   77 (285)
T 1wg8_A           10 LYQEALDLL----AVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRH   77 (285)
T ss_dssp             THHHHHHHH----TCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGG
T ss_pred             HHHHHHHhh----CCCCCCEEEEeCCCCcHHHHHHHHC---CCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcch
Confidence            555666665    3345679999999999999999985   5799999999999999988 532    479999999865


Q ss_pred             c---cccC-CCceeEEEEcCCCC
Q 017476          259 K---LKDV-EGKLSGVVSNPPYI  277 (371)
Q Consensus       259 ~---l~~~-~~~fDlIvsNPPYi  277 (371)
                      .   +... .+++|.|++|+.|.
T Consensus        78 l~~~L~~~g~~~vDgIL~DLGvS  100 (285)
T 1wg8_A           78 LKRHLAALGVERVDGILADLGVS  100 (285)
T ss_dssp             HHHHHHHTTCSCEEEEEEECSCC
T ss_pred             HHHHHHHcCCCCcCEEEeCCccc
Confidence            3   2211 25799999999874

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.27  E-value=6.2e-07  Score=83.97  Aligned_cols=135  Identities=13%  Similarity=0.094  Sum_probs=81.8

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-CcccccccCCCceeEEEE
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG-SWFGKLKDVEGKLSGVVS  272 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~g-D~~~~l~~~~~~fDlIvs  272 (371)
                      .++.+|||||||.|.++..+++.. +...|+|+|+...+...+... ...+. +-+.+... |... +.  .+++|+|+|
T Consensus        89 k~~~~VLDLGaAPGGWsQvAa~~~-gv~sV~GvdvG~d~~~~pi~~-~~~g~-~ii~~~~~~dv~~-l~--~~~~DvVLS  162 (282)
T 3gcz_A           89 KPTGIVVDLGCGRGGWSYYAASLK-NVKKVMAFTLGVQGHEKPIMR-TTLGW-NLIRFKDKTDVFN-ME--VIPGDTLLC  162 (282)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCCCCC-CBTTG-GGEEEECSCCGGG-SC--CCCCSEEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhc-CCCeeeeEEeccCcccccccc-ccCCC-ceEEeeCCcchhh-cC--CCCcCEEEe
Confidence            356699999999999999988753 556799999986532222110 00111 11333322 3322 22  368999999


Q ss_pred             cCCCCCCCCcccchhhhcccCccccccCCCCcHHHHH--HHHHHHhcccccC--cEEEEEECC--cCcHHHHHHHHhccc
Q 017476          273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLL--HLCNGTASMLKPG--GFFAFETNG--EKQCKFLKNYLENDS  346 (371)
Q Consensus       273 NPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~--~il~~a~~~Lkpg--G~lvle~~~--~~q~~~v~~~l~~~~  346 (371)
                      +---                      ..|..-.|.++  .+++.|.++|+||  |.+++-+-.  ......+.+.|+.  
T Consensus       163 DmAp----------------------nsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~~l~~~lk~--  218 (282)
T 3gcz_A          163 DIGE----------------------SSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPLIMEELSRLQL--  218 (282)
T ss_dssp             CCCC----------------------CCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHHHHHHHHHHHH--
T ss_pred             cCcc----------------------CCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCccHHHHHHHHHH--
Confidence            5110                      01111123333  3588889999999  999998833  2233444555553  


Q ss_pred             cCCceeEEEEecCCC
Q 017476          347 ACSFCNVSIVSDFAG  361 (371)
Q Consensus       347 ~~gf~~v~~~~Dl~g  361 (371)
                        .|..|.+.+. +-
T Consensus       219 --~F~~V~~~KP-aS  230 (282)
T 3gcz_A          219 --KHGGGLVRVP-LS  230 (282)
T ss_dssp             --HHCCEEECCT-TS
T ss_pred             --hcCCEEEEcC-CC
Confidence              4999999887 54

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=98.00  E-value=2.9e-05  Score=75.18  Aligned_cols=77  Identities=17%  Similarity=0.220  Sum_probs=56.0

Q ss_pred             CeEEEECCcccHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc-CC-CceeEEEEc
Q 017476          197 GFWVDLGTGSGAIAIGIARVLGS-KGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VE-GKLSGVVSN  273 (371)
Q Consensus       197 ~~VLDlG~GsG~~al~la~~~~~-~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~-~~-~~fDlIvsN  273 (371)
                      .+++|++||.|.+++.+.+. +- -..|+++|+++.+++..+.|..      ...++.+|+.+.... .. ..+|+|+.+
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~-G~~~~~v~~~E~d~~a~~~~~~N~~------~~~~~~~Di~~~~~~~~~~~~~D~l~~g   75 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNFP------HTQLLAKTIEGITLEEFDRLSFDMILMS   75 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHCT------TSCEECSCGGGCCHHHHHHHCCSEEEEC
T ss_pred             CeEEEeCcCccHHHHHHHHC-CCCceEEEEEeCCHHHHHHHHHhcc------ccccccCCHHHccHhHcCcCCcCEEEEc
Confidence            48999999999999999886 21 2369999999999999999863      245778888764321 11 269999999


Q ss_pred             CCCCCCC
Q 017476          274 PPYIPSD  280 (371)
Q Consensus       274 PPYi~~~  280 (371)
                      ||+-+-+
T Consensus        76 pPCq~fS   82 (343)
T 1g55_A           76 PPCQPFT   82 (343)
T ss_dssp             CC-----
T ss_pred             CCCcchh
Confidence            9986543

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.97  E-value=2.2e-05  Score=74.34  Aligned_cols=65  Identities=22%  Similarity=0.214  Sum_probs=51.3

Q ss_pred             ccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC
Q 017476          172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG  244 (371)
Q Consensus       172 Prp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~g  244 (371)
                      |.+-.+.+++.++... .    .++..|||+|||||.+++++++.   +.+++|+|+++.+++.|++|++...
T Consensus       217 ~~~~p~~l~~~~i~~~-~----~~~~~vlD~f~GsGt~~~~a~~~---g~~~~g~e~~~~~~~~a~~r~~~~~  281 (297)
T 2zig_A          217 PAPFPLELAERLVRMF-S----FVGDVVLDPFAGTGTTLIAAARW---GRRALGVELVPRYAQLAKERFAREV  281 (297)
T ss_dssp             -CCSCHHHHHHHHHHH-C----CTTCEEEETTCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHh-C----CCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHHhc
Confidence            3333456777777665 1    24679999999999999998874   5799999999999999999998753

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.96  E-value=6.9e-06  Score=78.93  Aligned_cols=90  Identities=26%  Similarity=0.343  Sum_probs=70.2

Q ss_pred             HHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccc
Q 017476          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG  258 (371)
Q Consensus       179 lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~  258 (371)
                      |++.+++.+    ...+++.++|..+|.|..+..+++.++++++|+|+|.++.|++.|+ ++    ..++++++++++.+
T Consensus        45 Ll~Evl~~L----~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL----~~~Rv~lv~~nF~~  115 (347)
T 3tka_A           45 LLDEAVNGL----NIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI----DDPRFSIIHGPFSA  115 (347)
T ss_dssp             TTHHHHHHT----CCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC----CCTTEEEEESCGGG
T ss_pred             cHHHHHHhh----CCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh----cCCcEEEEeCCHHH
Confidence            555666665    3345789999999999999999998778899999999999999884 33    24689999999865


Q ss_pred             ccc---cC--CCceeEEEEcCCCC
Q 017476          259 KLK---DV--EGKLSGVVSNPPYI  277 (371)
Q Consensus       259 ~l~---~~--~~~fDlIvsNPPYi  277 (371)
                      ...   ..  .+++|.|+.|..|.
T Consensus       116 l~~~L~~~g~~~~vDgILfDLGVS  139 (347)
T 3tka_A          116 LGEYVAERDLIGKIDGILLDLGVS  139 (347)
T ss_dssp             HHHHHHHTTCTTCEEEEEEECSCC
T ss_pred             HHHHHHhcCCCCcccEEEECCccC
Confidence            321   11  23699999999884

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.93  E-value=5.7e-06  Score=76.41  Aligned_cols=129  Identities=19%  Similarity=0.176  Sum_probs=74.7

Q ss_pred             CCCCeEEEECCcccHHHHHHHHH--hCC-CcEEEEEe--CCHHHHHHHHHHHHHcCCCCcEEEEEc-CcccccccCCCce
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARV--LGS-KGSIIAVD--LNPLAAAVAAFNAQRYGLQDIIEIRQG-SWFGKLKDVEGKL  267 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~--~~~-~~~V~gvD--is~~al~~A~~n~~~~gl~~~v~~~~g-D~~~~l~~~~~~f  267 (371)
                      .++.+|+||||+.|.++..+++.  .+. .+.++|+|  +.|-..       ...|. +-++|.++ |+++. .  ..++
T Consensus        72 kpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~-------~~~Gv-~~i~~~~G~Df~~~-~--~~~~  140 (269)
T 2px2_A           72 QPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLM-------QSYGW-NIVTMKSGVDVFYK-P--SEIS  140 (269)
T ss_dssp             CCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCC-------CSTTG-GGEEEECSCCGGGS-C--CCCC
T ss_pred             CCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcc-------cCCCc-eEEEeeccCCccCC-C--CCCC
Confidence            35779999999999999999986  211 23455555  222100       00111 12466668 99862 2  2579


Q ss_pred             eEEEEcC-CCCCCCCcccchhhhcccCccccccCCCCcHHHHH--HHHHHHhcccccCc-EEEEEECCcCcHHHHHHHHh
Q 017476          268 SGVVSNP-PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLL--HLCNGTASMLKPGG-FFAFETNGEKQCKFLKNYLE  343 (371)
Q Consensus       268 DlIvsNP-PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~--~il~~a~~~LkpgG-~lvle~~~~~q~~~v~~~l~  343 (371)
                      |+|+|+- |-  +                     |..-.|..+  ..++-|.++|+||| .+++-+-. ...+.+.++++
T Consensus       141 DvVLSDMAPn--S---------------------G~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFq-g~~~~~~~~l~  196 (269)
T 2px2_A          141 DTLLCDIGES--S---------------------PSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILC-PYMPKVIEKLE  196 (269)
T ss_dssp             SEEEECCCCC--C---------------------SCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC-TTSHHHHHHHH
T ss_pred             CEEEeCCCCC--C---------------------CccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECC-CCchHHHHHHH
Confidence            9999952 11  1                     111122221  15677889999999 88888732 22244544333


Q ss_pred             ccccCCceeEEEEec
Q 017476          344 NDSACSFCNVSIVSD  358 (371)
Q Consensus       344 ~~~~~gf~~v~~~~D  358 (371)
                      .. +..|..+.+.+.
T Consensus       197 ~l-k~~F~~vkvk~p  210 (269)
T 2px2_A          197 SL-QRRFGGGLVRVP  210 (269)
T ss_dssp             HH-HHHHCCEEECCT
T ss_pred             HH-HHHcCCEEEECC
Confidence            22 134888887666

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.89  E-value=0.0001  Score=69.24  Aligned_cols=137  Identities=15%  Similarity=0.115  Sum_probs=84.7

Q ss_pred             CCCCCCeEEEECC------cccHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCC
Q 017476          192 DGLRDGFWVDLGT------GSGAIAIGIARVLGSK-GSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVE  264 (371)
Q Consensus       192 ~~~~~~~VLDlG~------GsG~~al~la~~~~~~-~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~  264 (371)
                      ....+.+|||+|+      -.|..  .+.+ +.+. +.|+++|+.+-..           ..+  .+++||..+...  .
T Consensus       106 ~vp~gmrVLDLGA~s~kg~APGS~--VLr~-~~p~g~~VVavDL~~~~s-----------da~--~~IqGD~~~~~~--~  167 (344)
T 3r24_A          106 AVPYNMRVIHFGAGSDKGVAPGTA--VLRQ-WLPTGTLLVDSDLNDFVS-----------DAD--STLIGDCATVHT--A  167 (344)
T ss_dssp             CCCTTCEEEEESCCCTTSBCHHHH--HHHH-HSCTTCEEEEEESSCCBC-----------SSS--EEEESCGGGEEE--S
T ss_pred             eecCCCEEEeCCCCCCCCCCCcHH--HHHH-hCCCCcEEEEeeCccccc-----------CCC--eEEEcccccccc--C
Confidence            4456789999996      56662  3334 4565 6999999988331           122  459999765333  3


Q ss_pred             CceeEEEEcC--CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC-CcCcHHHHHHH
Q 017476          265 GKLSGVVSNP--PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN-GEKQCKFLKNY  341 (371)
Q Consensus       265 ~~fDlIvsNP--PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~-~~~q~~~v~~~  341 (371)
                      ++||+|+|+-  +-....          . .++.      .-+......++-|.+.|+|||.+++-+- |.. .+.+.++
T Consensus       168 ~k~DLVISDMAPNtTG~~----------D-~d~~------Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg-~~~L~~l  229 (344)
T 3r24_A          168 NKWDLIISDMYDPRTKHV----------T-KEND------SKEGFFTYLCGFIKQKLALGGSIAVKITEHSW-NADLYKL  229 (344)
T ss_dssp             SCEEEEEECCCCTTSCSS----------C-SCCC------CCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC-CHHHHHH
T ss_pred             CCCCEEEecCCCCcCCcc----------c-cchh------HHHHHHHHHHHHHHHhCcCCCEEEEEEecCCC-HHHHHHH
Confidence            7899999962  211100          0 0000      0123455778888999999999999873 333 3445554


Q ss_pred             HhccccCCceeEEEEecCC---CCceEEEEE
Q 017476          342 LENDSACSFCNVSIVSDFA---GIQRFVTGF  369 (371)
Q Consensus       342 l~~~~~~gf~~v~~~~Dl~---g~~R~~~a~  369 (371)
                      .+     .|..++++++-+   -.+-|++|+
T Consensus       230 rk-----~F~~VK~fK~ASRa~SsEvYLVG~  255 (344)
T 3r24_A          230 MG-----HFSWWTAFVTNVNASSSEAFLIGA  255 (344)
T ss_dssp             HT-----TEEEEEEEEEGGGTTSSCEEEEEE
T ss_pred             Hh-----hCCeEEEECCCCCCCCeeEEEEee
Confidence            43     499999997522   234466664

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.88  E-value=1.1e-05  Score=76.02  Aligned_cols=131  Identities=12%  Similarity=0.059  Sum_probs=78.7

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-CcccccccCCCceeEEEEc
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG-SWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~g-D~~~~l~~~~~~fDlIvsN  273 (371)
                      ++.+||||||+.|.++..+++.. +...|+|+|+.......... ....+ .+-+.+..+ |... +.  .+++|+|+||
T Consensus        81 ~g~~vlDLGaaPGgWsqva~~~~-gv~sV~Gvdlg~~~~~~P~~-~~~~~-~~iv~~~~~~di~~-l~--~~~~DlVlsD  154 (300)
T 3eld_A           81 ITGRVLDLGCGRGGWSYYAAAQK-EVMSVKGYTLGIEGHEKPIH-MQTLG-WNIVKFKDKSNVFT-MP--TEPSDTLLCD  154 (300)
T ss_dssp             CCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCCCC-CCBTT-GGGEEEECSCCTTT-SC--CCCCSEEEEC
T ss_pred             CCCEEEEcCCCCCHHHHHHHHhc-CCceeeeEEecccccccccc-ccccC-CceEEeecCceeee-cC--CCCcCEEeec
Confidence            56799999999999999999753 44579999997532110000 00001 012333333 3322 22  3689999996


Q ss_pred             C-CCCCCCCcccchhhhcccCccccccCCCCcHHHH--HHHHHHHhcccccC-cEEEEEECC--cCcHHHHHHHHhcccc
Q 017476          274 P-PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYL--LHLCNGTASMLKPG-GFFAFETNG--EKQCKFLKNYLENDSA  347 (371)
Q Consensus       274 P-PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~--~~il~~a~~~Lkpg-G~lvle~~~--~~q~~~v~~~l~~~~~  347 (371)
                      - |.                       .|..-.|.+  ..+++.+.++|+|| |.+++-+-.  ......+...|+.   
T Consensus       155 ~APn-----------------------sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~~~~ll~~lk~---  208 (300)
T 3eld_A          155 IGES-----------------------SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDVIEKLERLQL---  208 (300)
T ss_dssp             CCCC-----------------------CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHHHHHHHHHHHH---
T ss_pred             CcCC-----------------------CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCccHHHHHHHHHH---
Confidence            2 11                       011112222  24588889999999 999998833  2233444555553   


Q ss_pred             CCceeEEEEec
Q 017476          348 CSFCNVSIVSD  358 (371)
Q Consensus       348 ~gf~~v~~~~D  358 (371)
                       .|..|.+.+.
T Consensus       209 -~F~~V~~~KP  218 (300)
T 3eld_A          209 -RFGGGIVRVP  218 (300)
T ss_dssp             -HHCCEEECCT
T ss_pred             -hCCcEEEEeC
Confidence             4899999887

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=97.68  E-value=0.0002  Score=70.10  Aligned_cols=76  Identities=21%  Similarity=0.197  Sum_probs=59.3

Q ss_pred             CeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc-------CCCceeE
Q 017476          197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-------VEGKLSG  269 (371)
Q Consensus       197 ~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~-------~~~~fDl  269 (371)
                      .+++||+||.|.+++.+.+.  .-..|.++|+++.+++..+.|.     + ...++++|+.+....       ..+.+|+
T Consensus         3 ~~vidLFsG~GGlslG~~~a--G~~~v~avE~d~~a~~t~~~N~-----~-~~~~~~~DI~~~~~~~~~~~~~~~~~~D~   74 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARA--GFDVKMAVEIDQHAINTHAINF-----P-RSLHVQEDVSLLNAEIIKGFFKNDMPIDG   74 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHH--TCEEEEEECSCHHHHHHHHHHC-----T-TSEEECCCGGGCCHHHHHHHHCSCCCCCE
T ss_pred             CeEEEEccCcCHHHHHHHHC--CCcEEEEEeCCHHHHHHHHHhC-----C-CCceEecChhhcCHHHHHhhcccCCCeeE
Confidence            38999999999999999886  3345779999999999988884     2 367888998764221       1357999


Q ss_pred             EEEcCCCCCCC
Q 017476          270 VVSNPPYIPSD  280 (371)
Q Consensus       270 IvsNPPYi~~~  280 (371)
                      |+..||+-+-+
T Consensus        75 i~ggpPCQ~fS   85 (376)
T 3g7u_A           75 IIGGPPCQGFS   85 (376)
T ss_dssp             EEECCCCCTTC
T ss_pred             EEecCCCCCcc
Confidence            99999986543

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.65  E-value=8.3e-05  Score=68.92  Aligned_cols=65  Identities=18%  Similarity=0.221  Sum_probs=50.1

Q ss_pred             ccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC
Q 017476          172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG  244 (371)
Q Consensus       172 Prp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~g  244 (371)
                      |.+-.+.|++.+++.. .    .++..|||++||||..++++.+.   +.+++|+|+++.+++.|++|++.++
T Consensus       194 ~~~~p~~l~~~~i~~~-~----~~~~~vlD~f~GsGtt~~~a~~~---gr~~ig~e~~~~~~~~~~~r~~~~~  258 (260)
T 1g60_A          194 ITPKPRDLIERIIRAS-S----NPNDLVLDCFMGSGTTAIVAKKL---GRNFIGCDMNAEYVNQANFVLNQLE  258 (260)
T ss_dssp             -CCCCHHHHHHHHHHH-C----CTTCEEEESSCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC--
T ss_pred             CCCCCHHHHHHHHHHh-C----CCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHhcc
Confidence            3333456777776655 1    24679999999999999998874   5799999999999999999997665

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=97.65  E-value=0.00033  Score=68.70  Aligned_cols=132  Identities=16%  Similarity=0.007  Sum_probs=74.3

Q ss_pred             CCeEEEECCcccHHHHHHHHH-------------h---CCCcEEEEEeCC-----------HHHHHHHHHHHHHcCCCCc
Q 017476          196 DGFWVDLGTGSGAIAIGIARV-------------L---GSKGSIIAVDLN-----------PLAAAVAAFNAQRYGLQDI  248 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~-------------~---~~~~~V~gvDis-----------~~al~~A~~n~~~~gl~~~  248 (371)
                      .-+|+|+||++|..++.+...             .   .|..+|+..|+-           +...+.+++   ..|...+
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~---~~g~~~~  129 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEK---ENGRKIG  129 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHH---HTCCCTT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhh---hccCCCC
Confidence            468999999999999888765             1   256789999987           333332211   2232112


Q ss_pred             EEEEE---cCcccccccCCCceeEEEEcCCCCCCCCcc-cchhhh--cccCccccccCCCC-----------cHHHHHHH
Q 017476          249 IEIRQ---GSWFGKLKDVEGKLSGVVSNPPYIPSDDIS-GLQVEV--GKHEPRLALDGGVD-----------GLDYLLHL  311 (371)
Q Consensus       249 v~~~~---gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~-~l~~ev--~~~ep~~aL~gg~d-----------Gl~~~~~i  311 (371)
                      .-|+.   |.++..+- +.+++|+|+||--..+-.+.+ .+....  ....-.+. ..+..           --.++..|
T Consensus       130 ~~f~~gvpgSFy~rlf-p~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~-i~~~sp~~v~~ay~~Qf~~D~~~F  207 (384)
T 2efj_A          130 SCLIGAMPGSFYSRLF-PEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIY-SSKASRPPIQKAYLDQFTKDFTTF  207 (384)
T ss_dssp             SEEEEECCSCTTSCCS-CTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSS-SCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEecchhhhhccC-CCCceEEEEecceeeecCCCchhhhccccccccCCceE-ecCCCCHHHHHHHHHHHHHHHHHH
Confidence            34444   44444332 257999999987666544432 111000  00000000 00000           01345577


Q ss_pred             HHHHhcccccCcEEEEEECCc
Q 017476          312 CNGTASMLKPGGFFAFETNGE  332 (371)
Q Consensus       312 l~~a~~~LkpgG~lvle~~~~  332 (371)
                      |+...+.|+|||.++++..|.
T Consensus       208 L~~Ra~eL~pGG~mvl~~~gr  228 (384)
T 2efj_A          208 LRIHSEELISRGRMLLTFICK  228 (384)
T ss_dssp             HHHHHHHEEEEEEEEEEEECC
T ss_pred             HHHHHHHhccCCeEEEEEecC
Confidence            888899999999999998654

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=97.58  E-value=0.00066  Score=65.19  Aligned_cols=76  Identities=12%  Similarity=0.075  Sum_probs=58.7

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCC
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP  275 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPP  275 (371)
                      ..+++||+||.|.+++.+.+.  .-..|.++|+++.+++..+.|....     .   .+|+.+........+|+|+..||
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~a--G~~~v~~~e~d~~a~~t~~~N~~~~-----~---~~Di~~~~~~~~~~~D~l~~gpP   80 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFGEK-----P---EGDITQVNEKTIPDHDILCAGFP   80 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHSCC-----C---BSCGGGSCGGGSCCCSEEEEECC
T ss_pred             CCcEEEECCCcCHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHcCCC-----C---cCCHHHcCHhhCCCCCEEEECCC
Confidence            468999999999999999874  3456889999999999999996321     1   68876644322346999999999


Q ss_pred             CCCCCC
Q 017476          276 YIPSDD  281 (371)
Q Consensus       276 Yi~~~~  281 (371)
                      |-+-+.
T Consensus        81 CQ~fS~   86 (327)
T 2c7p_A           81 CQAFSI   86 (327)
T ss_dssp             CTTTCT
T ss_pred             CCCcch
Confidence            976544

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.58  E-value=0.0002  Score=69.56  Aligned_cols=59  Identities=8%  Similarity=-0.054  Sum_probs=49.4

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccc
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK  259 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~  259 (371)
                      +..|||+|.|.|.++..|++.. ...+|++||+++..+...++.. .   .++++++.+|+++.
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~-~~~~vvavE~D~~l~~~L~~~~-~---~~~l~ii~~D~l~~  117 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKY-CPRQYSLLEKRSSLYKFLNAKF-E---GSPLQILKRDPYDW  117 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHH-CCSEEEEECCCHHHHHHHHHHT-T---TSSCEEECSCTTCH
T ss_pred             CCEEEEECCCCCHHHHHHHhhC-CCCEEEEEecCHHHHHHHHHhc-c---CCCEEEEECCccch
Confidence            4689999999999999999864 3468999999999998888765 2   24699999999753

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=97.56  E-value=0.00023  Score=68.22  Aligned_cols=73  Identities=21%  Similarity=0.301  Sum_probs=50.3

Q ss_pred             CcEEEEEcCcccccccC-CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEE
Q 017476          247 DIIEIRQGSWFGKLKDV-EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFF  325 (371)
Q Consensus       247 ~~v~~~~gD~~~~l~~~-~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~l  325 (371)
                      ++..+++||..+.+..+ .++||+|+++|||....+.        .|...    ...+-+..+..+++.+.++|+|||.+
T Consensus        13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~--------~y~~~----~~~~~~~~l~~~l~~~~rvLk~~G~i   80 (323)
T 1boo_A           13 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKK--------EYGNL----EQHEYVDWFLSFAKVVNKKLKPDGSF   80 (323)
T ss_dssp             SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSC--------SSCSC----HHHHHHHHHHHHHHHHHHHEEEEEEE
T ss_pred             CCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCccc--------ccCCc----CHHHHHHHHHHHHHHHHHHCcCCcEE
Confidence            35789999987755433 4689999999999754321        01000    00112456678889999999999999


Q ss_pred             EEEECC
Q 017476          326 AFETNG  331 (371)
Q Consensus       326 vle~~~  331 (371)
                      +++++.
T Consensus        81 ~i~~~d   86 (323)
T 1boo_A           81 VVDFGG   86 (323)
T ss_dssp             EEEECC
T ss_pred             EEEECC
Confidence            999954

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.51  E-value=0.00076  Score=61.54  Aligned_cols=137  Identities=13%  Similarity=0.127  Sum_probs=81.3

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-CcccccccCCCceeEEEE
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG-SWFGKLKDVEGKLSGVVS  272 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~g-D~~~~l~~~~~~fDlIvs  272 (371)
                      .++.+|+||||++|.++..++... ...+|+|+|+-..-.+.= ..++.+|.. .++|.++ |++...+   .++|.|+|
T Consensus        77 ~~g~~VvDLGaapGGWSq~~a~~~-g~~~V~avdvG~~ghe~P-~~~~s~gwn-~v~fk~gvDv~~~~~---~~~Dtllc  150 (267)
T 3p8z_A           77 IPEGRVIDLGCGRGGWSYYCAGLK-KVTEVRGYTKGGPGHEEP-VPMSTYGWN-IVKLMSGKDVFYLPP---EKCDTLLC  150 (267)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHTST-TEEEEEEECCCSTTSCCC-CCCCCTTTT-SEEEECSCCGGGCCC---CCCSEEEE
T ss_pred             CCCCEEEEcCCCCCcHHHHHHHhc-CCCEEEEEecCCCCccCc-chhhhcCcC-ceEEEeccceeecCC---ccccEEEE
Confidence            456799999999999999888864 445799999977432100 001223443 4999999 9754322   57999999


Q ss_pred             cCCCCCCCCcccchhhhcccCccccccCCCCcHHH--HHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCc
Q 017476          273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDY--LLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSF  350 (371)
Q Consensus       273 NPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~--~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf  350 (371)
                      +-        ...++.              --.+.  ....|+.+.++|++ |-+++-+-.... .++.+.++.. +..|
T Consensus       151 DI--------geSs~~--------------~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~-p~v~e~l~~l-q~~f  205 (267)
T 3p8z_A          151 DI--------GESSPS--------------PTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYM-PTVIEHLERL-QRKH  205 (267)
T ss_dssp             CC--------CCCCSC--------------HHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCS-HHHHHHHHHH-HHHH
T ss_pred             ec--------CCCCCC--------------hhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCC-hhHHHHHHHH-HHHh
Confidence            51        110000              00111  12378888899999 677776632222 2232333221 1237


Q ss_pred             eeEEEEecCCC
Q 017476          351 CNVSIVSDFAG  361 (371)
Q Consensus       351 ~~v~~~~Dl~g  361 (371)
                      ..+.+++.++.
T Consensus       206 gg~lVR~P~SR  216 (267)
T 3p8z_A          206 GGMLVRNPLSR  216 (267)
T ss_dssp             CCEEECCTTSC
T ss_pred             CCEeEeCCCCC
Confidence            77777766543

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=97.51  E-value=0.0015  Score=61.99  Aligned_cols=143  Identities=16%  Similarity=0.168  Sum_probs=85.3

Q ss_pred             CeEEEECCcccHHHHHHHH---HhCCCcE--EEEEeCCH--------H-HHHHHHHHHHHc----CCCCcEEEEEcCccc
Q 017476          197 GFWVDLGTGSGAIAIGIAR---VLGSKGS--IIAVDLNP--------L-AAAVAAFNAQRY----GLQDIIEIRQGSWFG  258 (371)
Q Consensus       197 ~~VLDlG~GsG~~al~la~---~~~~~~~--V~gvDis~--------~-al~~A~~n~~~~----gl~~~v~~~~gD~~~  258 (371)
                      -+|||+|-|+|...+...+   +.++..+  .+.+|..+        + .-+....-....    +-.-.+++..||+.+
T Consensus        98 ~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~~  177 (308)
T 3vyw_A           98 IRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDARK  177 (308)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHHH
T ss_pred             cEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHHH
Confidence            4899999999986654332   2245554  56666532        1 111222222221    111135788899987


Q ss_pred             ccccCC-CceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHH
Q 017476          259 KLKDVE-GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKF  337 (371)
Q Consensus       259 ~l~~~~-~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~  337 (371)
                      .++... .++|+|+.++ |.|...     ++.  |.               ..+++.++++++|||+++--+    -+..
T Consensus       178 ~l~~l~~~~~Da~flDg-FsP~kN-----PeL--Ws---------------~e~f~~l~~~~~pgg~laTYt----aag~  230 (308)
T 3vyw_A          178 RIKEVENFKADAVFHDA-FSPYKN-----PEL--WT---------------LDFLSLIKERIDEKGYWVSYS----SSLS  230 (308)
T ss_dssp             HGGGCCSCCEEEEEECC-SCTTTS-----GGG--GS---------------HHHHHHHHTTEEEEEEEEESC----CCHH
T ss_pred             HHhhhcccceeEEEeCC-CCcccC-----ccc--CC---------------HHHHHHHHHHhCCCcEEEEEe----CcHH
Confidence            776653 4799999974 544332     222  11               168888899999999987433    4567


Q ss_pred             HHHHHhccccCCceeEEEEecCCCCceEEEEEe
Q 017476          338 LKNYLENDSACSFCNVSIVSDFAGIQRFVTGFR  370 (371)
Q Consensus       338 v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~~  370 (371)
                      |++-|.+   .|| .|+-.+-+.|+.-.++|.+
T Consensus       231 VRR~L~~---aGF-~V~k~~G~g~KReml~A~~  259 (308)
T 3vyw_A          231 VRKSLLT---LGF-KVGSSREIGRKRKGTVASL  259 (308)
T ss_dssp             HHHHHHH---TTC-EEEEEECC---CEEEEEES
T ss_pred             HHHHHHH---CCC-EEEecCCCCCCCceeEEec
Confidence            8888886   789 4666665555444666653

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=97.36  E-value=0.0014  Score=63.99  Aligned_cols=133  Identities=17%  Similarity=0.081  Sum_probs=75.0

Q ss_pred             CCeEEEECCcccHHHHHHHHH--------h------CCCcEEEEEeCCHHHHHHHHHHHHHc-----------CC--C-C
Q 017476          196 DGFWVDLGTGSGAIAIGIARV--------L------GSKGSIIAVDLNPLAAAVAAFNAQRY-----------GL--Q-D  247 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~--------~------~~~~~V~gvDis~~al~~A~~n~~~~-----------gl--~-~  247 (371)
                      +.+|+|+|||+|..++.+...        .      .|..+|+..|+-..-....=+++...           +.  . -
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            568999999999998887432        1      15678899898765544333332211           00  0 1


Q ss_pred             cEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcc-cCcc-----ccccCCCC---------cHHHHHHHH
Q 017476          248 IIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGK-HEPR-----LALDGGVD---------GLDYLLHLC  312 (371)
Q Consensus       248 ~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~-~ep~-----~aL~gg~d---------Gl~~~~~il  312 (371)
                      -+.-+.+.+...+- +.++||+|+||--..+-.+.+   ..+.. ..|.     +-..+...         -..++..++
T Consensus       133 f~~gvpgSFy~rlf-P~~S~d~v~Ss~aLHWls~~p---~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL  208 (374)
T 3b5i_A          133 FVAGVPGSFYRRLF-PARTIDFFHSAFSLHWLSQVP---ESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFL  208 (374)
T ss_dssp             EEEEEESCTTSCCS-CTTCEEEEEEESCTTBCSSCC---GGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecChhhhcccC-CCcceEEEEecceeeeeccCc---hhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence            12334455544332 357999999986655543322   11100 0000     00000000         012456789


Q ss_pred             HHHhcccccCcEEEEEECCc
Q 017476          313 NGTASMLKPGGFFAFETNGE  332 (371)
Q Consensus       313 ~~a~~~LkpgG~lvle~~~~  332 (371)
                      +..++.|+|||.++++..|.
T Consensus       209 ~~ra~eL~pGG~mvl~~~gr  228 (374)
T 3b5i_A          209 RARAAEVKRGGAMFLVCLGR  228 (374)
T ss_dssp             HHHHHHEEEEEEEEEEEEEC
T ss_pred             HHHHHHhCCCCEEEEEEecC
Confidence            99999999999999998644

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.36  E-value=0.00054  Score=64.40  Aligned_cols=139  Identities=12%  Similarity=0.065  Sum_probs=81.3

Q ss_pred             CCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-CcccccccCCCceeEEE
Q 017476          193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG-SWFGKLKDVEGKLSGVV  271 (371)
Q Consensus       193 ~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~g-D~~~~l~~~~~~fDlIv  271 (371)
                      ..++.+||||||++|.++..++... ....|+|+|+-..--+.= ..++.++. +-|.++++ |++. ++.  .++|+|+
T Consensus        92 l~~~~~VlDLGaapGGwsq~~~~~~-gv~~V~avdvG~~~he~P-~~~~ql~w-~lV~~~~~~Dv~~-l~~--~~~D~iv  165 (321)
T 3lkz_A           92 LEPVGKVIDLGCGRGGWCYYMATQK-RVQEVRGYTKGGPGHEEP-QLVQSYGW-NIVTMKSGVDVFY-RPS--ECCDTLL  165 (321)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHTTCT-TEEEEEEECCCSTTSCCC-CCCCBTTG-GGEEEECSCCTTS-SCC--CCCSEEE
T ss_pred             CCCCCEEEEeCCCCCcHHHHHHhhc-CCCEEEEEEcCCCCccCc-chhhhcCC-cceEEEeccCHhh-CCC--CCCCEEE
Confidence            3456799999999999999888763 445799999987521000 00011122 23889988 8644 332  5799999


Q ss_pred             EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHH--HHHHHHHhcccccC-cEEEEEECCcCcHHHHHHHHhccccC
Q 017476          272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYL--LHLCNGTASMLKPG-GFFAFETNGEKQCKFLKNYLENDSAC  348 (371)
Q Consensus       272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~--~~il~~a~~~Lkpg-G~lvle~~~~~q~~~v~~~l~~~~~~  348 (371)
                      |+--        ..++.       .       -.+..  ...|+.+.++|++| |-+++-+-... ...+.+.++.. +.
T Consensus       166 cDig--------eSs~~-------~-------~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY-~~~v~e~l~~l-q~  221 (321)
T 3lkz_A          166 CDIG--------ESSSS-------A-------EVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPY-MPKVIEKMELL-QR  221 (321)
T ss_dssp             ECCC--------CCCSC-------H-------HHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTT-SHHHHHHHHHH-HH
T ss_pred             EECc--------cCCCC-------h-------hhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCC-ChHHHHHHHHH-HH
Confidence            9421        11110       0       01111  23677888999998 88888773221 13343443322 23


Q ss_pred             CceeEEEEecCCC
Q 017476          349 SFCNVSIVSDFAG  361 (371)
Q Consensus       349 gf~~v~~~~Dl~g  361 (371)
                      .|..+.+++.++.
T Consensus       222 ~fgg~lvr~P~SR  234 (321)
T 3lkz_A          222 RYGGGLVRNPLSR  234 (321)
T ss_dssp             HHCCEEECCTTSC
T ss_pred             HhCCEeEeCCCCC
Confidence            4777777766643

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=97.32  E-value=0.0028  Score=60.97  Aligned_cols=77  Identities=18%  Similarity=0.255  Sum_probs=57.6

Q ss_pred             CeEEEECCcccHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc-C-CCceeEEEEc
Q 017476          197 GFWVDLGTGSGAIAIGIARVLGSK-GSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-V-EGKLSGVVSN  273 (371)
Q Consensus       197 ~~VLDlG~GsG~~al~la~~~~~~-~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~-~-~~~fDlIvsN  273 (371)
                      .+++|++||.|.+.+.+.+. +-. ..|.++|+++.+++..+.|..     + ..++.+|+.+.... . ...+|+++.-
T Consensus         4 ~~~idLFaG~GG~~~G~~~a-G~~~~~v~a~e~d~~a~~ty~~N~~-----~-~~~~~~DI~~~~~~~~~~~~~D~l~gg   76 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKES-GLDGEIVAAVDINTVANSVYKHNFP-----E-TNLLNRNIQQLTPQVIKKWNVDTILMS   76 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHCT-----T-SCEECCCGGGCCHHHHHHTTCCEEEEC
T ss_pred             CEEEEECcCccHHHHHHHHc-CCCceEEEEEeCCHHHHHHHHHhCC-----C-CceeccccccCCHHHhccCCCCEEEec
Confidence            38999999999999999875 222 358899999999998888852     1 45678888654221 1 1369999999


Q ss_pred             CCCCCCC
Q 017476          274 PPYIPSD  280 (371)
Q Consensus       274 PPYi~~~  280 (371)
                      ||+-+-+
T Consensus        77 pPCQ~fS   83 (333)
T 4h0n_A           77 PPCQPFT   83 (333)
T ss_dssp             CCCCCSE
T ss_pred             CCCcchh
Confidence            9987543

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=97.28  E-value=0.00021  Score=69.51  Aligned_cols=137  Identities=18%  Similarity=0.122  Sum_probs=80.0

Q ss_pred             CCCeEEEECCcccHHHHHHHHH---------------hCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEE---EEcCc
Q 017476          195 RDGFWVDLGTGSGAIAIGIARV---------------LGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEI---RQGSW  256 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~---------------~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~---~~gD~  256 (371)
                      ..-+|+|+||++|..++.+...               -.|..+|+..|+-......+-+++.......+..|   +.|.+
T Consensus        51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF  130 (359)
T 1m6e_X           51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF  130 (359)
T ss_dssp             SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred             CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence            3458999999999766654432               13567899999988887777666532110001233   44555


Q ss_pred             ccccccCCCceeEEEEcCCCCCCCCcc-cchh---hh--cccCccccccCC-CCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          257 FGKLKDVEGKLSGVVSNPPYIPSDDIS-GLQV---EV--GKHEPRLALDGG-VDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       257 ~~~l~~~~~~fDlIvsNPPYi~~~~~~-~l~~---ev--~~~ep~~aL~gg-~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      ...+- +.+++|+|+||--..+-.+.+ .+..   .+  ..-.|..+...- ..-..++..|++..++.|+|||.++++.
T Consensus       131 y~rlf-p~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~  209 (359)
T 1m6e_X          131 YGRLF-PRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI  209 (359)
T ss_dssp             SSCCS-CTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred             hhccC-CCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence            55433 257999999986655544322 1110   00  000000000000 0013566788999999999999999998


Q ss_pred             CCc
Q 017476          330 NGE  332 (371)
Q Consensus       330 ~~~  332 (371)
                      .|.
T Consensus       210 ~gr  212 (359)
T 1m6e_X          210 LGR  212 (359)
T ss_dssp             EEC
T ss_pred             ecC
Confidence            543

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.24  E-value=0.0027  Score=61.80  Aligned_cols=68  Identities=18%  Similarity=0.196  Sum_probs=51.7

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      .++.++|||||++|.++..++++   +++|+|||+.+-. .    .+.  . ..+|+++++|.++..+. .++||+|+|+
T Consensus       210 ~~G~~vlDLGAaPGGWT~~l~~r---g~~V~aVD~~~l~-~----~l~--~-~~~V~~~~~d~~~~~~~-~~~~D~vvsD  277 (375)
T 4auk_A          210 ANGMWAVDLGACPGGWTYQLVKR---NMWVYSVDNGPMA-Q----SLM--D-TGQVTWLREDGFKFRPT-RSNISWMVCD  277 (375)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT---TCEEEEECSSCCC-H----HHH--T-TTCEEEECSCTTTCCCC-SSCEEEEEEC
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHC---CCEEEEEEhhhcC-h----hhc--c-CCCeEEEeCccccccCC-CCCcCEEEEc
Confidence            35789999999999999999885   5799999987521 1    111  1 23599999999876543 4689999994

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.18  E-value=0.00053  Score=63.40  Aligned_cols=86  Identities=21%  Similarity=0.275  Sum_probs=54.3

Q ss_pred             EEEEEcCcccccccC-CCceeEEEEcCCCCCC-CCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEE
Q 017476          249 IEIRQGSWFGKLKDV-EGKLSGVVSNPPYIPS-DDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFA  326 (371)
Q Consensus       249 v~~~~gD~~~~l~~~-~~~fDlIvsNPPYi~~-~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lv  326 (371)
                      .+++++|..+.+..+ .++||+|+++|||-.. .+...       +.      ...+-++.+..+++.+.++|++||.++
T Consensus         5 ~~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~-------~~------~~~~y~~~~~~~l~~~~~~Lk~~g~i~   71 (260)
T 1g60_A            5 NKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDS-------FD------SHNEFLAFTYRWIDKVLDKLDKDGSLY   71 (260)
T ss_dssp             SSEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGC-------CS------SHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             CeEEechHHHHHHhccccccCEEEECCCCCCCcccccc-------cC------CHHHHHHHHHHHHHHHHHHhcCCeEEE
Confidence            467899987655433 3689999999999643 11110       00      001113456678888899999999999


Q ss_pred             EEECCcCcHHHHHHHHhccccCCce
Q 017476          327 FETNGEKQCKFLKNYLENDSACSFC  351 (371)
Q Consensus       327 le~~~~~q~~~v~~~l~~~~~~gf~  351 (371)
                      +++... ....+...+.+   .||.
T Consensus        72 v~~~d~-~~~~~~~~~~~---~gf~   92 (260)
T 1g60_A           72 IFNTPF-NCAFICQYLVS---KGMI   92 (260)
T ss_dssp             EEECHH-HHHHHHHHHHH---TTCE
T ss_pred             EEcCcH-HHHHHHHHHHh---hccc
Confidence            998433 33344445553   4564

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=97.12  E-value=0.0032  Score=60.41  Aligned_cols=76  Identities=14%  Similarity=0.161  Sum_probs=56.0

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCC-CcEE-EEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc-C-CCceeEEE
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGS-KGSI-IAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-V-EGKLSGVV  271 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~-~~~V-~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~-~-~~~fDlIv  271 (371)
                      ..+++||+||.|.+.+.+.+. +- ...| .++|+++.+++..+.|..     + . ++++|+.+.... . ...+|+++
T Consensus        10 ~~~vidLFaG~GG~~~G~~~a-G~~~~~v~~a~e~d~~a~~ty~~N~~-----~-~-~~~~DI~~~~~~~i~~~~~Dil~   81 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERS-SININATFIPFDINEIANKIYSKNFK-----E-E-VQVKNLDSISIKQIESLNCNTWF   81 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHS-SCCCCEEEEEECCCHHHHHHHHHHHC-----C-C-CBCCCTTTCCHHHHHHTCCCEEE
T ss_pred             CCEEEEECCChhHHHHHHHHc-CCCceEEEEEEECCHHHHHHHHHHCC-----C-C-cccCChhhcCHHHhccCCCCEEE
Confidence            458999999999999999874 21 2356 799999999999998862     2 1 567787653221 1 12699999


Q ss_pred             EcCCCCCC
Q 017476          272 SNPPYIPS  279 (371)
Q Consensus       272 sNPPYi~~  279 (371)
                      ..||+-+-
T Consensus        82 ggpPCQ~f   89 (327)
T 3qv2_A           82 MSPPCQPY   89 (327)
T ss_dssp             ECCCCTTC
T ss_pred             ecCCccCc
Confidence            99998654

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=97.01  E-value=0.0058  Score=57.99  Aligned_cols=73  Identities=18%  Similarity=0.205  Sum_probs=56.9

Q ss_pred             eEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCC
Q 017476          198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYI  277 (371)
Q Consensus       198 ~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi  277 (371)
                      +|+||.||.|.+.+.+-+.  .-..|.++|+++.+++.-+.|.     +  -.++.+|+.+.....-..+|+|+.-||+-
T Consensus         2 kvidLFsG~GG~~~G~~~a--G~~~v~a~e~d~~a~~ty~~N~-----~--~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ   72 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNH-----S--AKLIKGDISKISSDEFPKCDGIIGGPPSQ   72 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHT--TCEEEEEEECCTTTHHHHHHHC-----C--SEEEESCGGGCCGGGSCCCSEEECCCCGG
T ss_pred             eEEEeCcCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHC-----C--CCcccCChhhCCHhhCCcccEEEecCCCC
Confidence            7999999999999998774  3345789999999999888874     2  36788998764333235799999999986


Q ss_pred             CC
Q 017476          278 PS  279 (371)
Q Consensus       278 ~~  279 (371)
                      +-
T Consensus        73 ~f   74 (331)
T 3ubt_Y           73 SW   74 (331)
T ss_dssp             GT
T ss_pred             Cc
Confidence            54

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=96.73  E-value=0.0024  Score=61.03  Aligned_cols=70  Identities=13%  Similarity=0.192  Sum_probs=49.4

Q ss_pred             CcEEEE-EcCcccccccC-CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcE
Q 017476          247 DIIEIR-QGSWFGKLKDV-EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGF  324 (371)
Q Consensus       247 ~~v~~~-~gD~~~~l~~~-~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~  324 (371)
                      ....++ ++|.++.+..+ .++||+|+.+|||-...+         .+.      ...+=++.+...+..+.++|+|||.
T Consensus        37 ~~~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d---------~~~------~~~~~~~~~~~~l~~~~rvLk~~G~  101 (319)
T 1eg2_A           37 TTRHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLA---------DWD------DHMDYIGWAKRWLAEAERVLSPTGS  101 (319)
T ss_dssp             CEEEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGG---------GGG------TCSSHHHHHHHHHHHHHHHEEEEEE
T ss_pred             ccceEEECCcHHHHHHhCccCCcCEEEECCCCCCCCC---------Ccc------CHHHHHHHHHHHHHHHHHHcCCCeE
Confidence            346788 99987765433 368999999999964311         010      0112245677888889999999999


Q ss_pred             EEEEECC
Q 017476          325 FAFETNG  331 (371)
Q Consensus       325 lvle~~~  331 (371)
                      ++++++.
T Consensus       102 i~i~~~~  108 (319)
T 1eg2_A          102 IAIFGGL  108 (319)
T ss_dssp             EEEEECS
T ss_pred             EEEEcCc
Confidence            9999953

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=96.68  E-value=0.0092  Score=56.36  Aligned_cols=78  Identities=14%  Similarity=0.053  Sum_probs=58.1

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc-C--CCceeEE
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGS-IIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-V--EGKLSGV  270 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~-V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~-~--~~~fDlI  270 (371)
                      ...+++||+||.|.+.+.+.+. +-... |.++|+++.+++..+.|.     + ...++.+|+.+.... .  .+.+|+|
T Consensus        15 ~~~~vidLFaG~GG~~~g~~~a-G~~~~~v~a~E~d~~a~~ty~~N~-----~-~~~~~~~DI~~i~~~~i~~~~~~Dll   87 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKDL-GIQVDRYIASEVCEDSITVGMVRH-----Q-GKIMYVGDVRSVTQKHIQEWGPFDLV   87 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHT-TBCEEEEEEECCCHHHHHHHHHHT-----T-TCEEEECCGGGCCHHHHHHTCCCSEE
T ss_pred             CCCEEEEeCcCccHHHHHHHHC-CCccceEEEEECCHHHHHHHHHhC-----C-CCceeCCChHHccHHHhcccCCcCEE
Confidence            4568999999999999998874 22223 699999999998888774     2 246788998764321 1  1469999


Q ss_pred             EEcCCCCCC
Q 017476          271 VSNPPYIPS  279 (371)
Q Consensus       271 vsNPPYi~~  279 (371)
                      +.-||+-+-
T Consensus        88 ~ggpPCQ~f   96 (295)
T 2qrv_A           88 IGGSPCNDL   96 (295)
T ss_dssp             EECCCCGGG
T ss_pred             EecCCCccc
Confidence            999999653

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=96.61  E-value=0.0026  Score=66.83  Aligned_cols=131  Identities=21%  Similarity=0.331  Sum_probs=81.4

Q ss_pred             CCeEEEECCcccHHHHHHHHHhC------C-----CcEEEEEeC---CHHHHHHHHH-----------HHHHc-----C-
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLG------S-----KGSIIAVDL---NPLAAAVAAF-----------NAQRY-----G-  244 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~------~-----~~~V~gvDi---s~~al~~A~~-----------n~~~~-----g-  244 (371)
                      .-+|+|+|.|+|...+.+.+.+.      |     ..+++.+|.   +.+.+..|-.           -+...     | 
T Consensus        59 ~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  138 (689)
T 3pvc_A           59 SCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGC  138 (689)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEE
T ss_pred             ceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCc
Confidence            45899999999998888876541      1     157999999   4444443221           11111     1 


Q ss_pred             ----CCC---cEEEEEcCcccccccC----CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHH
Q 017476          245 ----LQD---IIEIRQGSWFGKLKDV----EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCN  313 (371)
Q Consensus       245 ----l~~---~v~~~~gD~~~~l~~~----~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~  313 (371)
                          +++   .++++.||..+.++.+    .+.+|.|+.++ |-|...     ++.  |.               ..++.
T Consensus       139 ~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~-f~p~~n-----p~~--w~---------------~~~~~  195 (689)
T 3pvc_A          139 HRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDG-FAPAKN-----PDM--WN---------------EQLFN  195 (689)
T ss_dssp             EEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECS-SCC--C-----CTT--CS---------------HHHHH
T ss_pred             eEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECC-CCCCCC-----hhh--hh---------------HHHHH
Confidence                111   4788999998777654    36899999975 333222     111  11               15666


Q ss_pred             HHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEe
Q 017476          314 GTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVS  357 (371)
Q Consensus       314 ~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~  357 (371)
                      .+.+++++||.+.-..    -...|++.+.+   .||. +...+
T Consensus       196 ~l~~~~~~g~~~~t~~----~~~~vr~~l~~---aGf~-~~~~~  231 (689)
T 3pvc_A          196 AMARMTRPGGTFSTFT----AAGFVRRGLQQ---AGFN-VTKVK  231 (689)
T ss_dssp             HHHHHEEEEEEEEESC----CCHHHHHHHHH---TTCE-EEEEE
T ss_pred             HHHHHhCCCCEEEecc----CcHHHHHHHHh---CCeE-EEecc
Confidence            7778999999876444    23568888875   7784 44333

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=96.28  E-value=0.0069  Score=57.79  Aligned_cols=66  Identities=18%  Similarity=0.116  Sum_probs=49.9

Q ss_pred             cccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCH---HHHHHHHHHHHHcC
Q 017476          171 IPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNP---LAAAVAAFNAQRYG  244 (371)
Q Consensus       171 iPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~---~al~~A~~n~~~~g  244 (371)
                      .|.+-...|++.++... .    .++..|||..||||..++++.+.   +.+.+|+|+++   ..++.|++++...+
T Consensus       223 ~~~~kp~~l~~~~i~~~-~----~~~~~vlDpF~GsGtt~~aa~~~---~r~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          223 HPTQKPAAVIERLVRAL-S----HPGSTVLDFFAGSGVTARVAIQE---GRNSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             CTTCCCHHHHHHHHHHH-S----CTTCEEEETTCTTCHHHHHHHHH---TCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred             CCCCCCHHHHHHHHHHh-C----CCCCEEEecCCCCCHHHHHHHHc---CCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence            34444566777777665 2    24679999999999999998885   57899999999   99999999887554

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=96.24  E-value=0.0042  Score=59.25  Aligned_cols=75  Identities=19%  Similarity=0.211  Sum_probs=54.2

Q ss_pred             ccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEE
Q 017476          172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEI  251 (371)
Q Consensus       172 Prp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~  251 (371)
                      |.+-...|++.++... .    .++..|||..||||..++++.+.   +.+.+|+|+++.+++.|+++++..+..  ...
T Consensus       234 ~~~kp~~l~~~~i~~~-~----~~~~~VlDpF~GsGtt~~aa~~~---gr~~ig~e~~~~~~~~~~~r~~~~~~~--~~~  303 (323)
T 1boo_A          234 PARFPAKLPEFFIRML-T----EPDDLVVDIFGGSNTTGLVAERE---SRKWISFEMKPEYVAASAFRFLDNNIS--EEK  303 (323)
T ss_dssp             SSCCCTHHHHHHHHHH-C----CTTCEEEETTCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHGGGSCSCSC--HHH
T ss_pred             CCcCCHHHHHHHHHHh-C----CCCCEEEECCCCCCHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHhcccc--hHH
Confidence            3333345666666554 1    24679999999999999988773   579999999999999999988765542  334


Q ss_pred             EEcCc
Q 017476          252 RQGSW  256 (371)
Q Consensus       252 ~~gD~  256 (371)
                      +++|+
T Consensus       304 ~~~~~  308 (323)
T 1boo_A          304 ITDIY  308 (323)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44444

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=96.09  E-value=0.019  Score=56.50  Aligned_cols=64  Identities=13%  Similarity=0.027  Sum_probs=51.0

Q ss_pred             CCCCeEEEECCcccHHHHHHH-HHhCCCcEEEEEeCCHHHHHHHHHHHHH--cCCC-CcEEEEEcCcc
Q 017476          194 LRDGFWVDLGTGSGAIAIGIA-RVLGSKGSIIAVDLNPLAAAVAAFNAQR--YGLQ-DIIEIRQGSWF  257 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la-~~~~~~~~V~gvDis~~al~~A~~n~~~--~gl~-~~v~~~~gD~~  257 (371)
                      .++..++|+|++.|..++.++ +..++.++|+++|.++...+..++|++.  ++.. ++++++..-+.
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~  292 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAG  292 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEEC
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEE
Confidence            356799999999999999988 4432337999999999999999999998  3333 56888876543

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=96.01  E-value=0.069  Score=55.71  Aligned_cols=133  Identities=16%  Similarity=0.244  Sum_probs=83.0

Q ss_pred             CCeEEEECCcccHHHHHHHHHhC------C-----CcEEEEEeC---CHHHHHHHHH-----------HHHHcCC-----
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLG------S-----KGSIIAVDL---NPLAAAVAAF-----------NAQRYGL-----  245 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~------~-----~~~V~gvDi---s~~al~~A~~-----------n~~~~gl-----  245 (371)
                      .-+|+|+|-|+|...+...+.+.      |     ..+++++|.   +.+.+..+-.           -......     
T Consensus        67 ~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (676)
T 3ps9_A           67 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC  146 (676)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEE
T ss_pred             ceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCc
Confidence            34899999999998887766541      1     246999999   7776663322           1221110     


Q ss_pred             -----C---CcEEEEEcCcccccccC----CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHH
Q 017476          246 -----Q---DIIEIRQGSWFGKLKDV----EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCN  313 (371)
Q Consensus       246 -----~---~~v~~~~gD~~~~l~~~----~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~  313 (371)
                           +   -.+++..||..+.++..    ...||.|+.++ |-|...     ++.  |.               ..++.
T Consensus       147 ~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~-f~p~~n-----p~~--w~---------------~~~~~  203 (676)
T 3ps9_A          147 HRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDG-FAPAKN-----PDM--WT---------------QNLFN  203 (676)
T ss_dssp             EEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECC-SCGGGC-----GGG--SC---------------HHHHH
T ss_pred             eEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECC-CCCcCC-----hhh--hh---------------HHHHH
Confidence                 0   23567888887766654    36799999975 332211     221  11               15677


Q ss_pred             HHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEecC
Q 017476          314 GTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDF  359 (371)
Q Consensus       314 ~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl  359 (371)
                      .+.+++++||.+.-..    -...|++.+.+   .||. +...+-+
T Consensus       204 ~l~~~~~~g~~~~t~~----~~~~vr~~L~~---aGf~-v~~~~~~  241 (676)
T 3ps9_A          204 AMARLARPGGTLATFT----SAGFVRRGLQD---AGFT-MQKRKGF  241 (676)
T ss_dssp             HHHHHEEEEEEEEESC----CCHHHHHHHHH---HTCE-EEEEECS
T ss_pred             HHHHHhCCCCEEEecc----CcHHHHHHHHh---CCeE-EEecccc
Confidence            7788999999977544    22568887775   6784 4444433

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=95.86  E-value=0.033  Score=51.53  Aligned_cols=121  Identities=12%  Similarity=0.058  Sum_probs=77.9

Q ss_pred             CCeEEEECCcccHHHHHHHHH---h---CCCcEEEEEe-----CCH----------------------HHHHHH---HHH
Q 017476          196 DGFWVDLGTGSGAIAIGIARV---L---GSKGSIIAVD-----LNP----------------------LAAAVA---AFN  239 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~---~---~~~~~V~gvD-----is~----------------------~al~~A---~~n  239 (371)
                      ++.|+|+|+-.|..+..++..   +   ++..+|+++|     ..+                      +.+...   .+|
T Consensus        70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~  149 (257)
T 3tos_A           70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC  149 (257)
T ss_dssp             CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred             CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence            569999999999988887653   1   2467899999     221                      112211   122


Q ss_pred             HHHcCC-CCcEEEEEcCccccccc-----CCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHH
Q 017476          240 AQRYGL-QDIIEIRQGSWFGKLKD-----VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCN  313 (371)
Q Consensus       240 ~~~~gl-~~~v~~~~gD~~~~l~~-----~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~  313 (371)
                      .+..+. .++++++.|++.+.++.     ..++||+|..+                          +  |-...+...++
T Consensus       150 ~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID--------------------------~--D~Y~~t~~~le  201 (257)
T 3tos_A          150 SDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFD--------------------------L--DLYEPTKAVLE  201 (257)
T ss_dssp             TSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEEC--------------------------C--CCHHHHHHHHH
T ss_pred             hhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEc--------------------------C--cccchHHHHHH
Confidence            223454 47899999999776543     13479999872                          0  11234556778


Q ss_pred             HHhcccccCcEEEEEECC---c-CcHHHHHHHHhc
Q 017476          314 GTASMLKPGGFFAFETNG---E-KQCKFLKNYLEN  344 (371)
Q Consensus       314 ~a~~~LkpgG~lvle~~~---~-~q~~~v~~~l~~  344 (371)
                      .+...|+|||++++.--+   + ...+++.+++.+
T Consensus       202 ~~~p~l~~GGvIv~DD~~~~~w~G~~~A~~ef~~~  236 (257)
T 3tos_A          202 AIRPYLTKGSIVAFDELDNPKWPGENIAMRKVLGL  236 (257)
T ss_dssp             HHGGGEEEEEEEEESSTTCTTCTHHHHHHHHHTCT
T ss_pred             HHHHHhCCCcEEEEcCCCCCCChHHHHHHHHHHhh
Confidence            888999999999996632   2 234455555553

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=95.79  E-value=0.015  Score=55.31  Aligned_cols=99  Identities=22%  Similarity=0.275  Sum_probs=63.1

Q ss_pred             CCCCCCeEEEECCcc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEE
Q 017476          192 DGLRDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGV  270 (371)
Q Consensus       192 ~~~~~~~VLDlG~Gs-G~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlI  270 (371)
                      ...++.+||-.|+|. |.+++.+|+..  +++|+++|.+++.++.+++    .|...-+.....|+.+.+....+.+|+|
T Consensus       163 ~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~~~~g~~d~v  236 (340)
T 3s2e_A          163 DTRPGQWVVISGIGGLGHVAVQYARAM--GLRVAAVDIDDAKLNLARR----LGAEVAVNARDTDPAAWLQKEIGGAHGV  236 (340)
T ss_dssp             TCCTTSEEEEECCSTTHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHHHSSEEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHH----cCCCEEEeCCCcCHHHHHHHhCCCCCEE
Confidence            344677999999985 89999999975  5799999999998887754    4543111111112222121112468888


Q ss_pred             EEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476          271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE  328 (371)
Q Consensus       271 vsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle  328 (371)
                      +-+-.                         +       ...++.+.+.|++||.+++.
T Consensus       237 id~~g-------------------------~-------~~~~~~~~~~l~~~G~iv~~  262 (340)
T 3s2e_A          237 LVTAV-------------------------S-------PKAFSQAIGMVRRGGTIALN  262 (340)
T ss_dssp             EESSC-------------------------C-------HHHHHHHHHHEEEEEEEEEC
T ss_pred             EEeCC-------------------------C-------HHHHHHHHHHhccCCEEEEe
Confidence            86311                         0       03456667889999998764

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=95.25  E-value=0.26  Score=48.43  Aligned_cols=46  Identities=13%  Similarity=-0.150  Sum_probs=36.2

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCCCcE----EEEEeCCHHHHHHHHHHHH
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGSKGS----IIAVDLNPLAAAVAAFNAQ  241 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~~~~----V~gvDis~~al~~A~~n~~  241 (371)
                      ..+|+|++||.|.+...+.+.-.+..-    |.++|+++.|++.-+.|..
T Consensus        10 ~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~   59 (403)
T 4dkj_A           10 VIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHS   59 (403)
T ss_dssp             EEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHC
T ss_pred             cceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcC
Confidence            358999999999999999774100123    8899999999998888864

>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}

Probab=95.12  E-value=0.061  Score=50.16  Aligned_cols=94  Identities=15%  Similarity=0.045  Sum_probs=61.7

Q ss_pred             EcCcccccccCCCceeEEEEc--CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC
Q 017476          253 QGSWFGKLKDVEGKLSGVVSN--PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN  330 (371)
Q Consensus       253 ~gD~~~~l~~~~~~fDlIvsN--PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~  330 (371)
                      ..|+..+..  .+++|+|+||  |||....    .+ ...+|            ...+.-++..|.++|+|||.+++-.-
T Consensus       195 ~lDfg~p~~--~~k~DvV~SDMApn~sGh~----yq-QC~DH------------arii~Lal~fA~~vLkPGGtfV~Kvy  255 (320)
T 2hwk_A          195 RLDLGIPGD--VPKYDIIFVNVRTPYKYHH----YQ-QCEDH------------AIKLSMLTKKACLHLNPGGTCVSIGY  255 (320)
T ss_dssp             CGGGCSCTT--SCCEEEEEEECCCCCCSCH----HH-HHHHH------------HHHHHHTHHHHGGGEEEEEEEEEEEC
T ss_pred             ccccCCccc--cCcCCEEEEcCCCCCCCcc----cc-ccchH------------HHHHHHHHHHHHHhcCCCceEEEEEe
Confidence            566655433  2789999998  6664211    01 00112            12222377889999999999999985


Q ss_pred             CcC--cHHHHHHHHhccccCCceeEEEEecCC---CCceEEEEE
Q 017476          331 GEK--QCKFLKNYLENDSACSFCNVSIVSDFA---GIQRFVTGF  369 (371)
Q Consensus       331 ~~~--q~~~v~~~l~~~~~~gf~~v~~~~Dl~---g~~R~~~a~  369 (371)
                      +..  ..+.+...++    ..|..+++.+.-+   ..+-|++++
T Consensus       256 ggaDr~se~lv~~La----R~F~~Vr~vKP~ASR~StEvf~La~  295 (320)
T 2hwk_A          256 GYADRASESIIGAIA----RQFKFSRVCKPKSSLEETEVLFVFI  295 (320)
T ss_dssp             CCCSHHHHHHHHHHH----TTEEEEEEECCTTCCSTTCEEEEEE
T ss_pred             cCCcccHHHHHHHHH----HhcceeeeeCCCCccccceEEEEEE
Confidence            555  6778888887    4599999988643   456666664

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=95.11  E-value=0.036  Score=53.38  Aligned_cols=45  Identities=29%  Similarity=0.280  Sum_probs=36.7

Q ss_pred             CCCCCCeEEEECCcc-cHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHH
Q 017476          192 DGLRDGFWVDLGTGS-GAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       192 ~~~~~~~VLDlG~Gs-G~~al~la~~~~~~~-~V~gvDis~~al~~A~~  238 (371)
                      ...++.+||-+|+|. |.+++.+|+.+  ++ +|+++|.+++.++.+++
T Consensus       187 ~~~~g~~VlV~GaG~vG~~a~qlak~~--Ga~~Vi~~~~~~~~~~~a~~  233 (371)
T 1f8f_A          187 KVTPASSFVTWGAGAVGLSALLAAKVC--GASIIIAVDIVESRLELAKQ  233 (371)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHH--TCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEECCCHHHHHHHHH
Confidence            344678999999986 88888999876  44 79999999999888764

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=95.08  E-value=0.021  Score=57.61  Aligned_cols=81  Identities=14%  Similarity=0.045  Sum_probs=57.2

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc--------------
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK--------------  261 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~--------------  261 (371)
                      ..+++||+||.|.+.+.+.+.  .-..|.++|+++.+++.-+.|..   ......++.+|+.+...              
T Consensus        88 ~~~viDLFaG~GGlslG~~~a--G~~~v~avE~d~~A~~ty~~N~~---~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~  162 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESI--GGQCVFTSEWNKHAVRTYKANHY---CDPATHHFNEDIRDITLSHQEGVSDEAAAEH  162 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTT--TEEEEEEECCCHHHHHHHHHHSC---CCTTTCEEESCTHHHHCTTCTTSCHHHHHHH
T ss_pred             cceEEEecCCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHhcc---cCCCcceeccchhhhhhccccccchhhHHhh
Confidence            458999999999999998763  22358999999999988887742   11124567788755321              


Q ss_pred             --cCCCceeEEEEcCCCCCCCC
Q 017476          262 --DVEGKLSGVVSNPPYIPSDD  281 (371)
Q Consensus       262 --~~~~~fDlIvsNPPYi~~~~  281 (371)
                        .....+|+|+.-||+-+.+.
T Consensus       163 i~~~~~~~Dvl~gGpPCQ~FS~  184 (482)
T 3me5_A          163 IRQHIPEHDVLLAGFPCQPFSL  184 (482)
T ss_dssp             HHHHSCCCSEEEEECCCCCC--
T ss_pred             hhhcCCCCCEEEecCCCcchhh
Confidence              11246899999999876443

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=94.38  E-value=0.059  Score=46.71  Aligned_cols=43  Identities=14%  Similarity=0.089  Sum_probs=31.9

Q ss_pred             CCCCCeEEEECC--cccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 017476          193 GLRDGFWVDLGT--GSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA  237 (371)
Q Consensus       193 ~~~~~~VLDlG~--GsG~~al~la~~~~~~~~V~gvDis~~al~~A~  237 (371)
                      ..++++||..|+  |.|..+..+++..  +.+|+++|.+++.++.++
T Consensus        36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~--G~~V~~~~~~~~~~~~~~   80 (198)
T 1pqw_A           36 LSPGERVLIHSATGGVGMAAVSIAKMI--GARIYTTAGSDAKREMLS   80 (198)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHH
T ss_pred             CCCCCEEEEeeCCChHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHH
Confidence            345779999984  4566666666664  579999999998877654

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=94.36  E-value=0.062  Score=51.39  Aligned_cols=45  Identities=16%  Similarity=0.202  Sum_probs=36.0

Q ss_pred             CCCCCCeEEEECCcc-cHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHH
Q 017476          192 DGLRDGFWVDLGTGS-GAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       192 ~~~~~~~VLDlG~Gs-G~~al~la~~~~~~~-~V~gvDis~~al~~A~~  238 (371)
                      ...++.+||-+|+|. |.+++.+|+.+  ++ +|+++|.+++.++.+++
T Consensus       168 ~~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~  214 (356)
T 1pl8_A          168 GVTLGHKVLVCGAGPIGMVTLLVAKAM--GAAQVVVTDLSATRLSKAKE  214 (356)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH
Confidence            344577999999885 78888888875  45 99999999988887753

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=94.29  E-value=0.69  Score=49.03  Aligned_cols=45  Identities=24%  Similarity=0.337  Sum_probs=35.5

Q ss_pred             CCeEEEECCcccHHHHHHHHHhC---C-CcEEEEEeCCHHHHHHHHHHH
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLG---S-KGSIIAVDLNPLAAAVAAFNA  240 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~---~-~~~V~gvDis~~al~~A~~n~  240 (371)
                      ..+|+||.||.|.+++.+.+.-.   . --.+.++|+++.|++.-+.|.
T Consensus       212 ~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh  260 (784)
T 4ft4_B          212 TATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH  260 (784)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC
T ss_pred             CCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC
Confidence            45899999999999998876410   0 025789999999999888884

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=94.22  E-value=0.066  Score=51.61  Aligned_cols=98  Identities=16%  Similarity=0.196  Sum_probs=62.4

Q ss_pred             CCCCCeEEEECCcc-cHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc----CCCc
Q 017476          193 GLRDGFWVDLGTGS-GAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD----VEGK  266 (371)
Q Consensus       193 ~~~~~~VLDlG~Gs-G~~al~la~~~~~~~-~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~----~~~~  266 (371)
                      ..++.+||-.|+|. |.+++.+|+..  ++ +|+++|.+++.++.+++    .|...-+.....|+.+.+..    ..+.
T Consensus       180 ~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~i~~~~~~~~gg  253 (370)
T 4ej6_A          180 IKAGSTVAILGGGVIGLLTVQLARLA--GATTVILSTRQATKRRLAEE----VGATATVDPSAGDVVEAIAGPVGLVPGG  253 (370)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCHHHHHHHHH----HTCSEEECTTSSCHHHHHHSTTSSSTTC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----cCCCEEECCCCcCHHHHHHhhhhccCCC
Confidence            44577999999875 78888888875  45 99999999998888765    45432111112233222211    1247


Q ss_pred             eeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476          267 LSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE  328 (371)
Q Consensus       267 fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle  328 (371)
                      +|+|+-+-.                         +       ...++.+.+.|++||.+++.
T Consensus       254 ~Dvvid~~G-------------------------~-------~~~~~~~~~~l~~~G~vv~~  283 (370)
T 4ej6_A          254 VDVVIECAG-------------------------V-------AETVKQSTRLAKAGGTVVIL  283 (370)
T ss_dssp             EEEEEECSC-------------------------C-------HHHHHHHHHHEEEEEEEEEC
T ss_pred             CCEEEECCC-------------------------C-------HHHHHHHHHHhccCCEEEEE
Confidence            999986210                         0       03456667888999988774

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=94.17  E-value=0.12  Score=49.36  Aligned_cols=44  Identities=16%  Similarity=0.178  Sum_probs=35.2

Q ss_pred             CCCCCeEEEECCcc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476          193 GLRDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       193 ~~~~~~VLDlG~Gs-G~~al~la~~~~~~~~V~gvDis~~al~~A~~  238 (371)
                      ..++.+||-.|+|. |.+++.+|+.+  +++|+++|.+++.++.+++
T Consensus       166 ~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~  210 (352)
T 1e3j_A          166 VQLGTTVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKN  210 (352)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH
Confidence            44577999999874 77888888875  5679999999998887763

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=94.02  E-value=0.063  Score=51.81  Aligned_cols=44  Identities=16%  Similarity=0.168  Sum_probs=35.9

Q ss_pred             CCCCCeEEEECCcc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476          193 GLRDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       193 ~~~~~~VLDlG~Gs-G~~al~la~~~~~~~~V~gvDis~~al~~A~~  238 (371)
                      ..++.+||-+|+|. |.+++.+|+..  +++|+++|.+++.++.+++
T Consensus       192 ~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~Vi~~~~~~~~~~~a~~  236 (369)
T 1uuf_A          192 AGPGKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKA  236 (369)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence            44577999999885 78888888874  5789999999998888764

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=93.62  E-value=0.43  Score=44.21  Aligned_cols=123  Identities=13%  Similarity=0.057  Sum_probs=74.6

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cC
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DV  263 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~  263 (371)
                      ++++.+|=-|.++| ++.++|+.| ..+++|+.+|.+.+.++.+.+.+   +  .++..+++|..+.-.         ..
T Consensus        27 L~gKvalVTGas~G-IG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~---g--~~~~~~~~Dv~~~~~v~~~~~~~~~~  100 (273)
T 4fgs_A           27 LNAKIAVITGATSG-IGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI---G--GGAVGIQADSANLAELDRLYEKVKAE  100 (273)
T ss_dssp             TTTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C--TTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             hCCCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc---C--CCeEEEEecCCCHHHHHHHHHHHHHH
Confidence            35677888887666 444444433 14689999999999887665433   3  347888999865311         11


Q ss_pred             CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          264 EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       264 ~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      .++.|++|.|--......+..++.+..+  -.+..-     +.-.-.+.+.+..+|+.+|.++...
T Consensus       101 ~G~iDiLVNNAG~~~~~~~~~~~~e~w~--~~~~vN-----l~g~~~~~~~~~p~m~~~G~IInis  159 (273)
T 4fgs_A          101 AGRIDVLFVNAGGGSMLPLGEVTEEQYD--DTFDRN-----VKGVLFTVQKALPLLARGSSVVLTG  159 (273)
T ss_dssp             HSCEEEEEECCCCCCCCCTTSCCHHHHH--HHHHHH-----THHHHHHHHHHTTTEEEEEEEEEEC
T ss_pred             cCCCCEEEECCCCCCCCChhhccHHHHH--HHHHHH-----hHHHHHHHHHHHHHHhhCCeEEEEe
Confidence            3789999999655444444444333211  111100     1223356677788999999877754

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=93.43  E-value=0.066  Score=52.06  Aligned_cols=45  Identities=24%  Similarity=0.189  Sum_probs=36.9

Q ss_pred             CCCCCCeEEEECCcc-cHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHH
Q 017476          192 DGLRDGFWVDLGTGS-GAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       192 ~~~~~~~VLDlG~Gs-G~~al~la~~~~~~~-~V~gvDis~~al~~A~~  238 (371)
                      ...++.+||-+|+|. |.+++.+|+.+  ++ +|+++|.+++.++.+++
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~  228 (398)
T 2dph_A          182 GVKPGSHVYIAGAGPVGRCAAAGARLL--GAACVIVGDQNPERLKLLSD  228 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHH--TCSEEEEEESCHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHH
Confidence            344678999999986 88899999976  45 99999999998887753

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=93.42  E-value=0.088  Score=50.01  Aligned_cols=44  Identities=16%  Similarity=0.143  Sum_probs=35.3

Q ss_pred             CCCeEEEECCcc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476          195 RDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       195 ~~~~VLDlG~Gs-G~~al~la~~~~~~~~V~gvDis~~al~~A~~  238 (371)
                      ++.+||-+|+|. |.+++.+|+...++++|+++|.+++.++.+++
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~  214 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE  214 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH
Confidence            678999999874 77788888875225789999999998888764

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=93.19  E-value=0.43  Score=43.76  Aligned_cols=92  Identities=15%  Similarity=0.082  Sum_probs=61.7

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc---------ccC
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL---------KDV  263 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l---------~~~  263 (371)
                      .+++++|=-|.++| ++.++++.+ ..+++|+.+|.+++.++.+.+.+...+.  ++..++.|..+.-         ...
T Consensus         7 L~gKvalVTGas~G-IG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (255)
T 4g81_D            7 LTGKTALVTGSARG-LGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGY--DAHGVAFDVTDELAIEAAFSKLDAE   83 (255)
T ss_dssp             CTTCEEEETTCSSH-HHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTC--CEEECCCCTTCHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHH
Confidence            34666776665554 555555443 1468999999999999888877777763  4889999986531         112


Q ss_pred             CCceeEEEEcCCCCCCCCcccchhh
Q 017476          264 EGKLSGVVSNPPYIPSDDISGLQVE  288 (371)
Q Consensus       264 ~~~fDlIvsNPPYi~~~~~~~l~~e  288 (371)
                      .++.|++|.|--......+..++.+
T Consensus        84 ~G~iDiLVNNAG~~~~~~~~~~~~e  108 (255)
T 4g81_D           84 GIHVDILINNAGIQYRKPMVELELE  108 (255)
T ss_dssp             TCCCCEEEECCCCCCCCCGGGCCHH
T ss_pred             CCCCcEEEECCCCCCCCChhhCCHH
Confidence            4789999999765544444444443

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=93.09  E-value=0.11  Score=49.36  Aligned_cols=98  Identities=19%  Similarity=0.201  Sum_probs=63.1

Q ss_pred             CCCCCeEEEECCcc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccC--CCceeE
Q 017476          193 GLRDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV--EGKLSG  269 (371)
Q Consensus       193 ~~~~~~VLDlG~Gs-G~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~--~~~fDl  269 (371)
                      ..++.+||-.|+|. |.+++.+|+.. ...+|+++|.+++.++.+++    .|... +--...|+.+.+...  ...+|+
T Consensus       169 ~~~g~~vlv~GaG~vG~~a~qla~~~-g~~~Vi~~~~~~~~~~~~~~----lGa~~-~i~~~~~~~~~v~~~t~g~g~d~  242 (345)
T 3jv7_A          169 LGPGSTAVVIGVGGLGHVGIQILRAV-SAARVIAVDLDDDRLALARE----VGADA-AVKSGAGAADAIRELTGGQGATA  242 (345)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHH-CCCEEEEEESCHHHHHHHHH----TTCSE-EEECSTTHHHHHHHHHGGGCEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHH----cCCCE-EEcCCCcHHHHHHHHhCCCCCeE
Confidence            34577999999875 78888888875 46799999999998888764    56432 211112222221111  136999


Q ss_pred             EEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476          270 VVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE  328 (371)
Q Consensus       270 IvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle  328 (371)
                      |+-.-                         |+       ...++.+.+.|++||.+++.
T Consensus       243 v~d~~-------------------------G~-------~~~~~~~~~~l~~~G~iv~~  269 (345)
T 3jv7_A          243 VFDFV-------------------------GA-------QSTIDTAQQVVAVDGHISVV  269 (345)
T ss_dssp             EEESS-------------------------CC-------HHHHHHHHHHEEEEEEEEEC
T ss_pred             EEECC-------------------------CC-------HHHHHHHHHHHhcCCEEEEE
Confidence            88521                         00       02556677899999998874

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=93.02  E-value=0.096  Score=49.68  Aligned_cols=44  Identities=20%  Similarity=0.270  Sum_probs=35.2

Q ss_pred             CCCCCeEEEECCc-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476          193 GLRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       193 ~~~~~~VLDlG~G-sG~~al~la~~~~~~~~V~gvDis~~al~~A~~  238 (371)
                      ..++.+||-.|+| .|..++.+++..  +++|+++|.+++.++.+++
T Consensus       162 ~~~g~~VlV~GaG~vG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~  206 (339)
T 1rjw_A          162 AKPGEWVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAKE  206 (339)
T ss_dssp             CCTTCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH
Confidence            3457799999986 477888888874  5799999999998887753

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=93.00  E-value=0.19  Score=47.69  Aligned_cols=67  Identities=15%  Similarity=0.098  Sum_probs=47.1

Q ss_pred             CCCCCCeEEEECCcc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEE
Q 017476          192 DGLRDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGV  270 (371)
Q Consensus       192 ~~~~~~~VLDlG~Gs-G~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlI  270 (371)
                      ...++.+||-.|+|. |.+++.+|+..  +++|+++|.+++.++.+++    .|...   ++ .|. +.+   ...+|+|
T Consensus       173 ~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~---v~-~~~-~~~---~~~~D~v  238 (348)
T 3two_A          173 KVTKGTKVGVAGFGGLGSMAVKYAVAM--GAEVSVFARNEHKKQDALS----MGVKH---FY-TDP-KQC---KEELDFI  238 (348)
T ss_dssp             TCCTTCEEEEESCSHHHHHHHHHHHHT--TCEEEEECSSSTTHHHHHH----TTCSE---EE-SSG-GGC---CSCEEEE
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHh----cCCCe---ec-CCH-HHH---hcCCCEE
Confidence            344678999999875 78888888875  5799999999988887754    56432   22 332 222   2379999


Q ss_pred             EE
Q 017476          271 VS  272 (371)
Q Consensus       271 vs  272 (371)
                      +-
T Consensus       239 id  240 (348)
T 3two_A          239 IS  240 (348)
T ss_dssp             EE
T ss_pred             EE
Confidence            86

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=92.88  E-value=0.3  Score=47.36  Aligned_cols=112  Identities=11%  Similarity=0.076  Sum_probs=76.3

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEEEcCcccccccCCCceeEEEEcC
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQD-IIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~-~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      +++||.++.+.|+++..++..     .++.+.=|-.+...++.|++.+++.+ .+++...  .+.   ..+.+|+|+.-.
T Consensus        39 ~~~~~~~~d~~gal~~~~~~~-----~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~--~~~---~~~~~~~v~~~l  108 (375)
T 4dcm_A           39 RGPVLILNDAFGALSCALAEH-----KPYSIGDSYISELATRENLRLNGIDESSVKFLDS--TAD---YPQQPGVVLIKV  108 (375)
T ss_dssp             CSCEEEECCSSSHHHHHTGGG-----CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET--TSC---CCSSCSEEEEEC
T ss_pred             CCCEEEECCCCCHHHHhhccC-----CceEEEhHHHHHHHHHHHHHHcCCCccceEeccc--ccc---cccCCCEEEEEc
Confidence            458999999999999988752     33555447777778899999999875 3565433  222   236899998733


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhc
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLEN  344 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~  344 (371)
                      |=                           .+......+..+...|++|+.+++.-........+.+.|++
T Consensus       109 pk---------------------------~~~~l~~~L~~l~~~l~~~~~i~~~g~~~~~~~~~~~~l~~  151 (375)
T 4dcm_A          109 PK---------------------------TLALLEQQLRALRKVVTSDTRIIAGAKARDIHTSTLELFEK  151 (375)
T ss_dssp             CS---------------------------CHHHHHHHHHHHHTTCCTTSEEEEEEEGGGCCHHHHHHHHH
T ss_pred             CC---------------------------CHHHHHHHHHHHHhhCCCCCEEEEEecccchHHHHHHHHHh
Confidence            31                           13455678888899999999987655322233455666654

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=92.81  E-value=0.35  Score=47.17  Aligned_cols=62  Identities=21%  Similarity=0.265  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhC------CCcEEEEEeCCHHHHHHHHHH
Q 017476          177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG------SKGSIIAVDLNPLAAAVAAFN  239 (371)
Q Consensus       177 e~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~------~~~~V~gvDis~~al~~A~~n  239 (371)
                      |.+..++.+.. .......+-.|+|+|.|+|.++..+.+.+.      ...+++.||+|+...+.=+++
T Consensus        63 e~la~~~~~~w-~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~  130 (387)
T 1zkd_A           63 ELLGLWSASVW-KAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTL  130 (387)
T ss_dssp             HHHHHHHHHHH-HHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHH
Confidence            44444444433 222222345799999999999988876542      234899999999776643433

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=92.79  E-value=0.073  Score=50.97  Aligned_cols=73  Identities=14%  Similarity=0.099  Sum_probs=47.2

Q ss_pred             CCCCCCeEEEECCcc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-CcccccccCCCceeE
Q 017476          192 DGLRDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG-SWFGKLKDVEGKLSG  269 (371)
Q Consensus       192 ~~~~~~~VLDlG~Gs-G~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~g-D~~~~l~~~~~~fDl  269 (371)
                      ...++.+||-+|+|. |.+++.+|+..  +++|+++|.+++.++.+++    .|...-+..... |+.+.+.   +.+|+
T Consensus       176 ~~~~g~~VlV~GaG~vG~~~~qlak~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~v~~~~~~~~~~~~~~---~~~D~  246 (360)
T 1piw_A          176 GCGPGKKVGIVGLGGIGSMGTLISKAM--GAETYVISRSSRKREDAMK----MGADHYIATLEEGDWGEKYF---DTFDL  246 (360)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHH----HTCSEEEEGGGTSCHHHHSC---SCEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHH----cCCCEEEcCcCchHHHHHhh---cCCCE
Confidence            344578999999863 77888888875  5689999999988887764    454311111111 2222222   47999


Q ss_pred             EEEc
Q 017476          270 VVSN  273 (371)
Q Consensus       270 IvsN  273 (371)
                      |+-+
T Consensus       247 vid~  250 (360)
T 1piw_A          247 IVVC  250 (360)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9974

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=92.67  E-value=0.18  Score=47.42  Aligned_cols=42  Identities=10%  Similarity=-0.036  Sum_probs=32.9

Q ss_pred             CCCCCeEEEECC--cccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 017476          193 GLRDGFWVDLGT--GSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA  236 (371)
Q Consensus       193 ~~~~~~VLDlG~--GsG~~al~la~~~~~~~~V~gvDis~~al~~A  236 (371)
                      ..++++||-.|+  |.|..++.+++..  +++|+++|.+++.++.+
T Consensus       143 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~--G~~V~~~~~~~~~~~~~  186 (333)
T 1v3u_A          143 VKGGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYL  186 (333)
T ss_dssp             CCSSCEEEEESTTBHHHHHHHHHHHHT--TCEEEEEESSHHHHHHH
T ss_pred             CCCCCEEEEecCCCcHHHHHHHHHHHC--CCEEEEEeCCHHHHHHH
Confidence            445779999997  5666777777763  67999999999888776

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=92.55  E-value=0.16  Score=48.23  Aligned_cols=45  Identities=13%  Similarity=0.177  Sum_probs=34.4

Q ss_pred             CCCCCCeEEEECC--cccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476          192 DGLRDGFWVDLGT--GSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       192 ~~~~~~~VLDlG~--GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~  238 (371)
                      ...++++||-.|+  |.|..++.+++..  +++|+++|.+++.++.+++
T Consensus       166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~--Ga~V~~~~~~~~~~~~~~~  212 (347)
T 2hcy_A          166 NLMAGHWVAISGAAGGLGSLAVQYAKAM--GYRVLGIDGGEGKEELFRS  212 (347)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECSTTHHHHHHH
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHC--CCcEEEEcCCHHHHHHHHH
Confidence            3446789999998  4677777777764  5799999999887776653

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=92.54  E-value=1.3  Score=42.14  Aligned_cols=61  Identities=11%  Similarity=0.071  Sum_probs=48.4

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC--------------------CCCcEEEEEcC
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG--------------------LQDIIEIRQGS  255 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~g--------------------l~~~v~~~~gD  255 (371)
                      ...|+.||||....+..+.... ++.+++-||. |+.++.-++.+...+                    ..++.+++.+|
T Consensus        98 ~~qVV~LGaGlDTr~~RL~~~~-~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D  175 (334)
T 1rjd_A           98 KVQVVNLGCGSDLRMLPLLQMF-PHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD  175 (334)
T ss_dssp             SEEEEEETCTTCCTHHHHHHHC-TTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred             CcEEEEeCCCCccHHHHhcCcC-CCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence            4589999999999999988763 6788899998 888888777766542                    13568999999


Q ss_pred             ccc
Q 017476          256 WFG  258 (371)
Q Consensus       256 ~~~  258 (371)
                      +.+
T Consensus       176 L~d  178 (334)
T 1rjd_A          176 LND  178 (334)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            876

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=92.53  E-value=0.099  Score=49.82  Aligned_cols=45  Identities=20%  Similarity=0.161  Sum_probs=35.5

Q ss_pred             CCCCCCeEEEECCcc-cHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHH
Q 017476          192 DGLRDGFWVDLGTGS-GAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       192 ~~~~~~~VLDlG~Gs-G~~al~la~~~~~~~-~V~gvDis~~al~~A~~  238 (371)
                      ...++.+||-+|+|. |.+++.+|+..  ++ +|+++|.+++.++.+++
T Consensus       163 ~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~~Vi~~~~~~~~~~~~~~  209 (352)
T 3fpc_A          163 NIKLGDTVCVIGIGPVGLMSVAGANHL--GAGRIFAVGSRKHCCDIALE  209 (352)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHTT--TCSSEEEECCCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH
Confidence            344677899999875 77888888864  45 89999999998888765

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=92.36  E-value=0.13  Score=49.74  Aligned_cols=44  Identities=25%  Similarity=0.265  Sum_probs=34.9

Q ss_pred             CCCCCeEEEECCc-ccHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHH
Q 017476          193 GLRDGFWVDLGTG-SGAIAIGIARVLGSK-GSIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       193 ~~~~~~VLDlG~G-sG~~al~la~~~~~~-~~V~gvDis~~al~~A~~  238 (371)
                      ..++.+||-.|+| .|.+++.+|+..  + .+|+++|.+++.++.+++
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~~~~  238 (380)
T 1vj0_A          193 SFAGKTVVIQGAGPLGLFGVVIARSL--GAENVIVIAGSPNRLKLAEE  238 (380)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHT--TBSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHc--CCceEEEEcCCHHHHHHHHH
Confidence            4457899999966 477788888874  5 599999999998887763

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=92.34  E-value=0.17  Score=48.65  Aligned_cols=45  Identities=29%  Similarity=0.230  Sum_probs=35.3

Q ss_pred             CCCCCCeEEEECCcc-cHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHH
Q 017476          192 DGLRDGFWVDLGTGS-GAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       192 ~~~~~~~VLDlG~Gs-G~~al~la~~~~~~~-~V~gvDis~~al~~A~~  238 (371)
                      ...++.+||-+|+|. |.+++.+|+.+  ++ +|+++|.+++.++.+++
T Consensus       189 ~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~~Vi~~~~~~~~~~~~~~  235 (374)
T 1cdo_A          189 KVEPGSTCAVFGLGAVGLAAVMGCHSA--GAKRIIAVDLNPDKFEKAKV  235 (374)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHH
Confidence            344577999999874 77888888875  45 89999999988887753

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=92.32  E-value=0.13  Score=48.93  Aligned_cols=45  Identities=29%  Similarity=0.329  Sum_probs=34.1

Q ss_pred             CCCCCeEEEECCc--ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476          193 GLRDGFWVDLGTG--SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       193 ~~~~~~VLDlG~G--sG~~al~la~~~~~~~~V~gvDis~~al~~A~~  238 (371)
                      ..++.+||-.|+|  .|..++.+++.. .+++|+++|.+++.++.+++
T Consensus       168 ~~~g~~vlV~Gagg~iG~~~~~~a~~~-~Ga~Vi~~~~~~~~~~~~~~  214 (347)
T 1jvb_A          168 LDPTKTLLVVGAGGGLGTMAVQIAKAV-SGATIIGVDVREEAVEAAKR  214 (347)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHH-TCCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHH
Confidence            4457799999987  455667777763 25799999999988887753

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=92.04  E-value=0.12  Score=49.11  Aligned_cols=45  Identities=18%  Similarity=0.144  Sum_probs=36.6

Q ss_pred             CCCCCCeEEEECCc--ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476          192 DGLRDGFWVDLGTG--SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       192 ~~~~~~~VLDlG~G--sG~~al~la~~~~~~~~V~gvDis~~al~~A~~  238 (371)
                      ...++.+||-.|+|  .|..++.+++..  +++|+++|.+++.++.+++
T Consensus       141 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~  187 (340)
T 3gms_A          141 NLQRNDVLLVNACGSAIGHLFAQLSQIL--NFRLIAVTRNNKHTEELLR  187 (340)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHH
T ss_pred             ccCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh
Confidence            44567899999987  677888888875  5799999999988888765

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=91.98  E-value=0.19  Score=48.23  Aligned_cols=45  Identities=20%  Similarity=0.055  Sum_probs=35.4

Q ss_pred             CCCCCCeEEEECCcc-cHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHH
Q 017476          192 DGLRDGFWVDLGTGS-GAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       192 ~~~~~~~VLDlG~Gs-G~~al~la~~~~~~~-~V~gvDis~~al~~A~~  238 (371)
                      ...++.+||-+|+|. |.+++.+|+.+  ++ +|+++|.+++.++.+++
T Consensus       188 ~~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~  234 (373)
T 1p0f_A          188 KVTPGSTCAVFGLGGVGFSAIVGCKAA--GASRIIGVGTHKDKFPKAIE  234 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHH--TCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEECCCHHHHHHHHH
Confidence            344577999999874 77888888876  45 89999999988887753

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=91.93  E-value=0.24  Score=54.10  Aligned_cols=79  Identities=14%  Similarity=0.126  Sum_probs=56.3

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccc------------cc
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSK-GSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK------------LK  261 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~-~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~------------l~  261 (371)
                      ...+++||+||.|.+++.+.+.  .- ..+.|+|+++.+++.-+.|.     ++ ..++.+|+.+.            ..
T Consensus       539 ~~l~~iDLFaG~GGlslGl~~A--G~~~vv~avEid~~A~~ty~~N~-----p~-~~~~~~DI~~l~~~~~~~di~~~~~  610 (1002)
T 3swr_A          539 PKLRTLDVFSGCGGLSEGFHQA--GISDTLWAIEMWDPAAQAFRLNN-----PG-STVFTEDCNILLKLVMAGETTNSRG  610 (1002)
T ss_dssp             CCEEEEEESCTTSHHHHHHHHH--TSEEEEEEECSSHHHHHHHHHHC-----TT-SEEECSCHHHHHHHHHHTCSBCTTC
T ss_pred             CCCeEEEeccCccHHHHHHHHC--CCCceEEEEECCHHHHHHHHHhC-----CC-CccccccHHHHhhhccchhhhhhhh
Confidence            3458999999999999999875  22 35889999999998888773     22 45666664221            00


Q ss_pred             -c--CCCceeEEEEcCCCCCCCC
Q 017476          262 -D--VEGKLSGVVSNPPYIPSDD  281 (371)
Q Consensus       262 -~--~~~~fDlIvsNPPYi~~~~  281 (371)
                       .  ..+.+|+|+.-||.-+.+.
T Consensus       611 ~~lp~~~~vDll~GGpPCQ~FS~  633 (1002)
T 3swr_A          611 QRLPQKGDVEMLCGGPPCQGFSG  633 (1002)
T ss_dssp             CBCCCTTTCSEEEECCCCTTCCS
T ss_pred             hhcccCCCeeEEEEcCCCcchhh
Confidence             0  1257999999999876543

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=91.72  E-value=0.21  Score=48.34  Aligned_cols=45  Identities=31%  Similarity=0.250  Sum_probs=36.3

Q ss_pred             CCCCCCeEEEECCcc-cHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHH
Q 017476          192 DGLRDGFWVDLGTGS-GAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       192 ~~~~~~~VLDlG~Gs-G~~al~la~~~~~~~-~V~gvDis~~al~~A~~  238 (371)
                      ...++.+||-+|+|. |.+++.+|+.+  ++ +|+++|.+++.++.|++
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlAk~~--Ga~~Vi~~~~~~~~~~~a~~  228 (398)
T 1kol_A          182 GVGPGSTVYVAGAGPVGLAAAASARLL--GAAVVIVGDLNPARLAHAKA  228 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHC--CCCeEEEEcCCHHHHHHHHH
Confidence            344677999999875 88888999975  44 89999999999888764

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=91.69  E-value=0.14  Score=49.17  Aligned_cols=45  Identities=18%  Similarity=0.072  Sum_probs=36.1

Q ss_pred             CCCCCCeEEEECCcc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476          192 DGLRDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       192 ~~~~~~~VLDlG~Gs-G~~al~la~~~~~~~~V~gvDis~~al~~A~~  238 (371)
                      ...++.+||-.|+|. |..++.+|+..  +++|+++|.+++.++.+++
T Consensus       186 ~~~~g~~VlV~G~G~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~  231 (363)
T 3uog_A          186 HLRAGDRVVVQGTGGVALFGLQIAKAT--GAEVIVTSSSREKLDRAFA  231 (363)
T ss_dssp             CCCTTCEEEEESSBHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEecCchhHHHHHH
Confidence            344678999999875 77888888874  5799999999998888754

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=91.68  E-value=0.18  Score=47.53  Aligned_cols=99  Identities=13%  Similarity=0.100  Sum_probs=61.1

Q ss_pred             CCCCCCeEEEECC--cccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc-CCCcee
Q 017476          192 DGLRDGFWVDLGT--GSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VEGKLS  268 (371)
Q Consensus       192 ~~~~~~~VLDlG~--GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~-~~~~fD  268 (371)
                      ...++++||-.|+  |.|..++.+++..  +++|+++|.+++.++.+.+   ..|...-+.....|+.+.+.. ..+.+|
T Consensus       146 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~d  220 (336)
T 4b7c_A          146 QPKNGETVVISGAAGAVGSVAGQIARLK--GCRVVGIAGGAEKCRFLVE---ELGFDGAIDYKNEDLAAGLKRECPKGID  220 (336)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH---TTCCSEEEETTTSCHHHHHHHHCTTCEE
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH---HcCCCEEEECCCHHHHHHHHHhcCCCce
Confidence            3446789999998  5677888888874  6799999999988877632   234321111111122111111 124699


Q ss_pred             EEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476          269 GVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE  328 (371)
Q Consensus       269 lIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle  328 (371)
                      +|+.|-                             |-    ..++.+.+.|++||.+++.
T Consensus       221 ~vi~~~-----------------------------g~----~~~~~~~~~l~~~G~iv~~  247 (336)
T 4b7c_A          221 VFFDNV-----------------------------GG----EILDTVLTRIAFKARIVLC  247 (336)
T ss_dssp             EEEESS-----------------------------CH----HHHHHHHTTEEEEEEEEEC
T ss_pred             EEEECC-----------------------------Cc----chHHHHHHHHhhCCEEEEE
Confidence            998741                             11    2456667899999998764

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=91.66  E-value=0.21  Score=47.92  Aligned_cols=45  Identities=27%  Similarity=0.174  Sum_probs=35.4

Q ss_pred             CCCCCCeEEEECCcc-cHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHH
Q 017476          192 DGLRDGFWVDLGTGS-GAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       192 ~~~~~~~VLDlG~Gs-G~~al~la~~~~~~~-~V~gvDis~~al~~A~~  238 (371)
                      ...++.+||-+|+|. |.+++.+|+.+  ++ +|+++|.+++.++.+++
T Consensus       187 ~~~~g~~VlV~GaG~vG~~avqla~~~--Ga~~Vi~~~~~~~~~~~~~~  233 (373)
T 2fzw_A          187 KLEPGSVCAVFGLGGVGLAVIMGCKVA--GASRIIGVDINKDKFARAKE  233 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHH--TCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHH
Confidence            344577999999874 77888888875  45 89999999998888764

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=91.60  E-value=1.1  Score=40.42  Aligned_cols=122  Identities=10%  Similarity=0.093  Sum_probs=71.6

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE  264 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~  264 (371)
                      .++++|=.|+++ .++..+++.+ ..+.+|+.+|.+++.++...+..   +  .++.++..|..+.-.         ...
T Consensus         7 ~gk~~lVTGas~-gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (255)
T 4eso_A            7 QGKKAIVIGGTH-GMGLATVRRLVEGGAEVLLTGRNESNIARIREEF---G--PRVHALRSDIADLNEIAVLGAAAGQTL   80 (255)
T ss_dssp             TTCEEEEETCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---G--GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--CcceEEEccCCCHHHHHHHHHHHHHHh
Confidence            456788777554 4555555543 24679999999998876655443   2  458999999865311         112


Q ss_pred             CceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          265 GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       265 ~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      +++|++|.|.-+.....+..++.+...  -....     -+.....+++.+..+++++|.+++..
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~--~~~~~-----N~~g~~~~~~~~~~~~~~~g~iv~is  138 (255)
T 4eso_A           81 GAIDLLHINAGVSELEPFDQVSEASYD--RQFAV-----NTKGAFFTVQRLTPLIREGGSIVFTS  138 (255)
T ss_dssp             SSEEEEEECCCCCCCBCGGGCCHHHHH--HHHHH-----HTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHH--HHHHH-----hhHHHHHHHHHHHHHHhcCCEEEEEC
Confidence            589999999765443332222222110  00000     01112246667778888889887754

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=91.52  E-value=0.23  Score=47.67  Aligned_cols=45  Identities=24%  Similarity=0.186  Sum_probs=35.2

Q ss_pred             CCCCCCeEEEECCcc-cHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHH
Q 017476          192 DGLRDGFWVDLGTGS-GAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       192 ~~~~~~~VLDlG~Gs-G~~al~la~~~~~~~-~V~gvDis~~al~~A~~  238 (371)
                      ...++.+||-+|+|. |.+++.+|+.+  ++ +|+++|.+++.++.+++
T Consensus       192 ~~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~  238 (376)
T 1e3i_A          192 KVTPGSTCAVFGLGCVGLSAIIGCKIA--GASRIIAIDINGEKFPKAKA  238 (376)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHH
Confidence            344577999999874 77888888875  45 89999999988887753

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=91.33  E-value=0.3  Score=46.75  Aligned_cols=44  Identities=14%  Similarity=0.052  Sum_probs=35.5

Q ss_pred             CCCCCeEEEEC--CcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476          193 GLRDGFWVDLG--TGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       193 ~~~~~~VLDlG--~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~  238 (371)
                      ..++.+||-.|  .|.|..++.+++..  +++|+++|.+++.++.+++
T Consensus       161 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~  206 (362)
T 2c0c_A          161 LSEGKKVLVTAAAGGTGQFAMQLSKKA--KCHVIGTCSSDEKSAFLKS  206 (362)
T ss_dssp             CCTTCEEEETTTTBTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHH
Confidence            34577999999  45788888899874  5799999999988887764

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=91.31  E-value=0.14  Score=48.64  Aligned_cols=42  Identities=17%  Similarity=0.253  Sum_probs=33.9

Q ss_pred             CCCeEEEECCcc-cHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHH
Q 017476          195 RDGFWVDLGTGS-GAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       195 ~~~~VLDlG~Gs-G~~al~la~~~~~~~-~V~gvDis~~al~~A~~  238 (371)
                      ++.+||-+|+|. |..++.+|+..  ++ +|+++|.+++.++.+++
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~--Ga~~Vi~~~~~~~~~~~~~~  210 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKAS--GAYPVIVSEPSDFRRELAKK  210 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHT--TCCSEEEECSCHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH
Confidence            678999999863 77788888874  45 89999999988887764

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=91.30  E-value=0.21  Score=46.90  Aligned_cols=45  Identities=22%  Similarity=0.160  Sum_probs=35.4

Q ss_pred             CCCCCCeEEEEC--CcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476          192 DGLRDGFWVDLG--TGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       192 ~~~~~~~VLDlG--~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~  238 (371)
                      ...++.+||-.|  .|.|..++.+++..  +++|+++|.+++.++.+++
T Consensus       137 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~  183 (325)
T 3jyn_A          137 QVKPGEIILFHAAAGGVGSLACQWAKAL--GAKLIGTVSSPEKAAHAKA  183 (325)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCCEEEEEcCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence            344677999988  34678888888875  5799999999998888764

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=91.16  E-value=0.23  Score=47.05  Aligned_cols=45  Identities=18%  Similarity=0.070  Sum_probs=36.4

Q ss_pred             CCCCCCeEEEECC--cccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476          192 DGLRDGFWVDLGT--GSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       192 ~~~~~~~VLDlG~--GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~  238 (371)
                      ...++.+||-.|+  |.|..++.+++..  +.+|+++|.+++.++.+++
T Consensus       163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~~--G~~Vi~~~~~~~~~~~~~~  209 (343)
T 2eih_A          163 GVRPGDDVLVMAAGSGVSVAAIQIAKLF--GARVIATAGSEDKLRRAKA  209 (343)
T ss_dssp             CCCTTCEEEECSTTSTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHh
Confidence            3446789999998  6788888888874  5799999999998887753

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=91.13  E-value=0.58  Score=42.45  Aligned_cols=84  Identities=15%  Similarity=0.155  Sum_probs=55.6

Q ss_pred             CCCCeEEEECCccc-HHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------c
Q 017476          194 LRDGFWVDLGTGSG-AIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------D  262 (371)
Q Consensus       194 ~~~~~VLDlG~GsG-~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~  262 (371)
                      .+++++|=-|.+++ .++.++|+.+ ..+++|+.+|.+++.++.+.+-++..+- .++.+++.|..+.-.         .
T Consensus         4 l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~   82 (256)
T 4fs3_A            4 LENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQ-PEAHLYQIDVQSDEEVINGFEQIGK   82 (256)
T ss_dssp             CTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTC-SSCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-CcEEEEEccCCCHHHHHHHHHHHHH
Confidence            35778888886442 2344443332 1468999999999888877776665543 248899999865311         1


Q ss_pred             CCCceeEEEEcCCCCC
Q 017476          263 VEGKLSGVVSNPPYIP  278 (371)
Q Consensus       263 ~~~~fDlIvsNPPYi~  278 (371)
                      ..++.|++|.|--+..
T Consensus        83 ~~G~iD~lvnnAg~~~   98 (256)
T 4fs3_A           83 DVGNIDGVYHSIAFAN   98 (256)
T ss_dssp             HHCCCSEEEECCCCCC
T ss_pred             HhCCCCEEEecccccc
Confidence            1368999999976543

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=91.12  E-value=0.24  Score=47.54  Aligned_cols=45  Identities=24%  Similarity=0.164  Sum_probs=35.3

Q ss_pred             CCCCCCeEEEECCcc-cHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHH
Q 017476          192 DGLRDGFWVDLGTGS-GAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       192 ~~~~~~~VLDlG~Gs-G~~al~la~~~~~~~-~V~gvDis~~al~~A~~  238 (371)
                      ...++.+||-+|+|. |.+++.+|+..  ++ +|+++|.+++.++.+++
T Consensus       188 ~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~~Vi~~~~~~~~~~~~~~  234 (374)
T 2jhf_A          188 KVTQGSTCAVFGLGGVGLSVIMGCKAA--GAARIIGVDINKDKFAKAKE  234 (374)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHH
Confidence            344577999999875 77888888875  45 89999999988887753

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=90.95  E-value=0.26  Score=46.51  Aligned_cols=44  Identities=5%  Similarity=-0.032  Sum_probs=34.7

Q ss_pred             CCCCCCeEEEECC--cccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 017476          192 DGLRDGFWVDLGT--GSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA  237 (371)
Q Consensus       192 ~~~~~~~VLDlG~--GsG~~al~la~~~~~~~~V~gvDis~~al~~A~  237 (371)
                      ...++++||-.|+  |.|..++.+++..  +++|+++|.+++.++.++
T Consensus       152 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~--G~~V~~~~~~~~~~~~~~  197 (345)
T 2j3h_A          152 SPKEGETVYVSAASGAVGQLVGQLAKMM--GCYVVGSAGSKEKVDLLK  197 (345)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHH
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH
Confidence            3445779999997  5677788888874  579999999998887765

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=90.86  E-value=0.19  Score=47.37  Aligned_cols=45  Identities=16%  Similarity=0.130  Sum_probs=35.2

Q ss_pred             CCCCCCeEEEECC--cccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476          192 DGLRDGFWVDLGT--GSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       192 ~~~~~~~VLDlG~--GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~  238 (371)
                      ...++.+||-.|+  |.|..++.+++..  +++|+++|.+++.++.+++
T Consensus       145 ~~~~g~~vlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~  191 (334)
T 3qwb_A          145 HVKKGDYVLLFAAAGGVGLILNQLLKMK--GAHTIAVASTDEKLKIAKE  191 (334)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence            3446789999984  5677888888874  6799999999998887754

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=90.63  E-value=0.39  Score=45.77  Aligned_cols=46  Identities=15%  Similarity=0.078  Sum_probs=36.8

Q ss_pred             CCCCCCeEEEECCcc-cHHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHH
Q 017476          192 DGLRDGFWVDLGTGS-GAIAIGIARVLGSKGS-IIAVDLNPLAAAVAAFN  239 (371)
Q Consensus       192 ~~~~~~~VLDlG~Gs-G~~al~la~~~~~~~~-V~gvDis~~al~~A~~n  239 (371)
                      ...++.+||=.|+|. |.+++.+|+..  +++ |+++|.+++.++.+++.
T Consensus       176 ~~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~l  223 (363)
T 3m6i_A          176 GVRLGDPVLICGAGPIGLITMLCAKAA--GACPLVITDIDEGRLKFAKEI  223 (363)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHHT--TCCSEEEEESCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHh
Confidence            344577899999875 78888889875  455 99999999999988764

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=90.43  E-value=0.25  Score=47.50  Aligned_cols=45  Identities=18%  Similarity=0.113  Sum_probs=35.6

Q ss_pred             CCCCCCeEEEECCc-ccHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHH
Q 017476          192 DGLRDGFWVDLGTG-SGAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       192 ~~~~~~~VLDlG~G-sG~~al~la~~~~~~~-~V~gvDis~~al~~A~~  238 (371)
                      ...++.+||=+|+| .|.+++.+|+..  ++ +|+++|.+++.++.|++
T Consensus       190 ~~~~g~~VlV~GaG~vG~~a~q~a~~~--Ga~~Vi~~~~~~~~~~~a~~  236 (378)
T 3uko_A          190 KVEPGSNVAIFGLGTVGLAVAEGAKTA--GASRIIGIDIDSKKYETAKK  236 (378)
T ss_dssp             CCCTTCCEEEECCSHHHHHHHHHHHHH--TCSCEEEECSCTTHHHHHHT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHH
Confidence            34457789999987 478888888876  44 89999999998887753

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=90.42  E-value=0.25  Score=46.85  Aligned_cols=45  Identities=27%  Similarity=0.218  Sum_probs=36.1

Q ss_pred             CCCCCCeEEEECC--cccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476          192 DGLRDGFWVDLGT--GSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       192 ~~~~~~~VLDlG~--GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~  238 (371)
                      ...++.+||-.|+  |.|..++.+++..  +++|++++.+++.++.+++
T Consensus       156 ~~~~g~~VlV~Gasg~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~  202 (342)
T 4eye_A          156 QLRAGETVLVLGAAGGIGTAAIQIAKGM--GAKVIAVVNRTAATEFVKS  202 (342)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh
Confidence            3446789999996  5678888888875  6799999999988887765

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=90.21  E-value=2.1  Score=40.01  Aligned_cols=83  Identities=14%  Similarity=0.017  Sum_probs=57.8

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE  264 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~  264 (371)
                      .+++||=.|++ |.++..+++.+ ..+.+|++++.+++.++.+.+.+...+...++.++..|+.+.-.         ...
T Consensus         7 ~~k~vlVTGas-~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   85 (319)
T 3ioy_A            7 AGRTAFVTGGA-NGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARF   85 (319)
T ss_dssp             TTCEEEEETTT-STHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEcCCc-hHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhC
Confidence            45678877765 44555555543 24679999999999888887777766644469999999865311         112


Q ss_pred             CceeEEEEcCCCCC
Q 017476          265 GKLSGVVSNPPYIP  278 (371)
Q Consensus       265 ~~fDlIvsNPPYi~  278 (371)
                      +.+|++|.|.-+..
T Consensus        86 g~id~lv~nAg~~~   99 (319)
T 3ioy_A           86 GPVSILCNNAGVNL   99 (319)
T ss_dssp             CCEEEEEECCCCCC
T ss_pred             CCCCEEEECCCcCC
Confidence            57999999975543

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=90.17  E-value=1.3  Score=39.52  Aligned_cols=124  Identities=16%  Similarity=0.062  Sum_probs=71.7

Q ss_pred             CCeEEEECCcccHHHHHHHHHhC--CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc--c-------CC
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLG--SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK--D-------VE  264 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~--~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~--~-------~~  264 (371)
                      +++||=.| |+|.++..+++.+.  .+.+|++++.++..++.+.+.+...+  .++.++.+|+.+.-.  .       ..
T Consensus         4 ~k~vlITG-asggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   80 (276)
T 1wma_A            4 IHVALVTG-GNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRKEY   80 (276)
T ss_dssp             CCEEEESS-CSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeC-CCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHHhc
Confidence            45666555 67778888877652  35799999999887777666666554  358899999865311  0       01


Q ss_pred             CceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          265 GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       265 ~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      +++|+||.|.-............+  .++-  .+..   -+.....+++.+.+.++++|.+++..
T Consensus        81 g~id~li~~Ag~~~~~~~~~~~~~--~~~~--~~~~---N~~g~~~l~~~~~~~~~~~g~iv~~s  138 (276)
T 1wma_A           81 GGLDVLVNNAGIAFKVADPTPFHI--QAEV--TMKT---NFFGTRDVCTELLPLIKPQGRVVNVS  138 (276)
T ss_dssp             SSEEEEEECCCCCCCTTCCSCHHH--HHHH--HHHH---HTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             CCCCEEEECCcccccCCCccccHH--HHHh--hhhe---eeeeHHHHHHHHHHhhCCCCEEEEEC
Confidence            479999998643321110000000  0000  0000   01122356677777887788877754

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=90.09  E-value=0.73  Score=43.38  Aligned_cols=100  Identities=19%  Similarity=0.148  Sum_probs=60.2

Q ss_pred             CCCCCCeEEEECCccc-HHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccC--CCcee
Q 017476          192 DGLRDGFWVDLGTGSG-AIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV--EGKLS  268 (371)
Q Consensus       192 ~~~~~~~VLDlG~GsG-~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~--~~~fD  268 (371)
                      ...++.+||=+|+|++ .+++.+++.. .+.+|+++|.+++-++.+++    .|...-+.....|+.+.+...  ...+|
T Consensus       160 ~~~~g~~VlV~GaG~~g~~a~~~a~~~-~g~~Vi~~~~~~~r~~~~~~----~Ga~~~i~~~~~~~~~~v~~~t~g~g~d  234 (348)
T 4eez_A          160 GVKPGDWQVIFGAGGLGNLAIQYAKNV-FGAKVIAVDINQDKLNLAKK----IGADVTINSGDVNPVDEIKKITGGLGVQ  234 (348)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHT-SCCEEEEEESCHHHHHHHHH----TTCSEEEEC-CCCHHHHHHHHTTSSCEE
T ss_pred             CCCCCCEEEEEcCCCccHHHHHHHHHh-CCCEEEEEECcHHHhhhhhh----cCCeEEEeCCCCCHHHHhhhhcCCCCce
Confidence            3446779999999864 5666666654 57899999999988777654    454322333333443322211  12466


Q ss_pred             EEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476          269 GVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE  328 (371)
Q Consensus       269 lIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle  328 (371)
                      .++-+-.                         +       ...+..+.+.|+++|.+++.
T Consensus       235 ~~~~~~~-------------------------~-------~~~~~~~~~~l~~~G~~v~~  262 (348)
T 4eez_A          235 SAIVCAV-------------------------A-------RIAFEQAVASLKPMGKMVAV  262 (348)
T ss_dssp             EEEECCS-------------------------C-------HHHHHHHHHTEEEEEEEEEC
T ss_pred             EEEEecc-------------------------C-------cchhheeheeecCCceEEEE
Confidence            6664210                         0       13455666889999988763

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=89.90  E-value=0.37  Score=46.19  Aligned_cols=96  Identities=20%  Similarity=0.210  Sum_probs=60.8

Q ss_pred             CCCeEEEEC-Cc-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccC-CCceeEEE
Q 017476          195 RDGFWVDLG-TG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV-EGKLSGVV  271 (371)
Q Consensus       195 ~~~~VLDlG-~G-sG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~-~~~fDlIv  271 (371)
                      ++.+||=.| +| .|.+++.+|+.+ .+.+|+++|.+++.++.+++    .|... +--...|+.+.+... .+.+|+|+
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~-~g~~Vi~~~~~~~~~~~~~~----lGad~-vi~~~~~~~~~v~~~~~~g~Dvvi  244 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQR-TDLTVIATASRPETQEWVKS----LGAHH-VIDHSKPLAAEVAALGLGAPAFVF  244 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHH-CCSEEEEECSSHHHHHHHHH----TTCSE-EECTTSCHHHHHHTTCSCCEEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHHHH----cCCCE-EEeCCCCHHHHHHHhcCCCceEEE
Confidence            466899888 44 588888999875 46799999999998888754    55431 111111222212111 24799888


Q ss_pred             EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476          272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE  328 (371)
Q Consensus       272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle  328 (371)
                      -+-                             |-   ...++.+.+.|++||.+++.
T Consensus       245 d~~-----------------------------g~---~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          245 STT-----------------------------HT---DKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             ECS-----------------------------CH---HHHHHHHHHHSCTTCEEEEC
T ss_pred             ECC-----------------------------Cc---hhhHHHHHHHhcCCCEEEEE
Confidence            520                             00   13556677899999998874

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=89.75  E-value=0.32  Score=45.62  Aligned_cols=45  Identities=22%  Similarity=0.113  Sum_probs=34.2

Q ss_pred             CCCCCCeEEEEC--CcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476          192 DGLRDGFWVDLG--TGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       192 ~~~~~~~VLDlG--~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~  238 (371)
                      ...++++||-.|  .|.|..++.+++..  +++|+++|.+++.++.+++
T Consensus       137 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~--G~~V~~~~~~~~~~~~~~~  183 (327)
T 1qor_A          137 EIKPDEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGTAQKAQSALK  183 (327)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH
Confidence            344577999998  45667777777764  5799999999988887764

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=89.72  E-value=0.69  Score=44.89  Aligned_cols=44  Identities=20%  Similarity=0.163  Sum_probs=35.3

Q ss_pred             CCCCCeEEEECCcc-cHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHH
Q 017476          193 GLRDGFWVDLGTGS-GAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       193 ~~~~~~VLDlG~Gs-G~~al~la~~~~~~~-~V~gvDis~~al~~A~~  238 (371)
                      ..++.+||=+|+|. |.+++.+|+..  ++ +|+++|.+++.++.+++
T Consensus       211 ~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~~~~  256 (404)
T 3ip1_A          211 IRPGDNVVILGGGPIGLAAVAILKHA--GASKVILSEPSEVRRNLAKE  256 (404)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH
Confidence            44677899999864 77888888875  45 99999999999888764

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=89.72  E-value=2.8  Score=37.75  Aligned_cols=85  Identities=14%  Similarity=0.028  Sum_probs=56.1

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE  264 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~  264 (371)
                      .++++|=.|+++| ++..+++.+ ..+.+|+.+|.+++.++.+.+.+....-..++.++..|+.+.-.         ...
T Consensus         7 ~~k~~lVTGas~G-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (265)
T 3lf2_A            7 SEAVAVVTGGSSG-IGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTL   85 (265)
T ss_dssp             TTCEEEEETCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            4567887776554 555555443 13679999999999888777776652222348999999865311         112


Q ss_pred             CceeEEEEcCCCCCCC
Q 017476          265 GKLSGVVSNPPYIPSD  280 (371)
Q Consensus       265 ~~fDlIvsNPPYi~~~  280 (371)
                      ++.|++|.|.-+....
T Consensus        86 g~id~lvnnAg~~~~~  101 (265)
T 3lf2_A           86 GCASILVNNAGQGRVS  101 (265)
T ss_dssp             CSCSEEEECCCCCCCB
T ss_pred             CCCCEEEECCCCCCCC
Confidence            5799999997665433

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=89.69  E-value=0.48  Score=45.26  Aligned_cols=69  Identities=17%  Similarity=0.178  Sum_probs=42.2

Q ss_pred             CCeEEEECCcc-cHHHHHHHHHhCCCcEEEEEeCCH---HHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEE
Q 017476          196 DGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNP---LAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV  271 (371)
Q Consensus       196 ~~~VLDlG~Gs-G~~al~la~~~~~~~~V~gvDis~---~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIv  271 (371)
                      +.+||-.|+|. |..++.+++..  +++|+++|.++   +.++.+++    .|.. .+.  ..|+.+.+....+.+|+|+
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~~~~----~ga~-~v~--~~~~~~~~~~~~~~~d~vi  251 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTY--GLEVWMANRREPTEVEQTVIEE----TKTN-YYN--SSNGYDKLKDSVGKFDVII  251 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHH--TCEEEEEESSCCCHHHHHHHHH----HTCE-EEE--CTTCSHHHHHHHCCEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCccchHHHHHHHH----hCCc-eec--hHHHHHHHHHhCCCCCEEE
Confidence            77999999842 55666777765  46999999998   77776653    3532 121  1122222111114699999


Q ss_pred             Ec
Q 017476          272 SN  273 (371)
Q Consensus       272 sN  273 (371)
                      .+
T Consensus       252 d~  253 (366)
T 2cdc_A          252 DA  253 (366)
T ss_dssp             EC
T ss_pred             EC
Confidence            75

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=89.56  E-value=3.2  Score=38.18  Aligned_cols=125  Identities=14%  Similarity=0.042  Sum_probs=69.8

Q ss_pred             CCCeEEEECCccc-HHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cC
Q 017476          195 RDGFWVDLGTGSG-AIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DV  263 (371)
Q Consensus       195 ~~~~VLDlG~GsG-~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~  263 (371)
                      .++++|=.|.++| .++..+++.+ ..+.+|+.++.++...+.+++.....+   ++.++.+|+.+.-.         ..
T Consensus        30 ~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~~  106 (293)
T 3grk_A           30 QGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELG---AFVAGHCDVADAASIDAVFETLEKK  106 (293)
T ss_dssp             TTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHT---CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC---CceEEECCCCCHHHHHHHHHHHHHh
Confidence            4678898887643 3444444432 136789999999776665555544443   48899999865311         11


Q ss_pred             CCceeEEEEcCCCCC----CCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          264 EGKLSGVVSNPPYIP----SDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       264 ~~~fDlIvsNPPYi~----~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      .+++|++|.|.-+..    ...+.....+.  ++-..  ..   -+.....+++.+...++++|.++...
T Consensus       107 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~--~~~~~--~~---N~~g~~~l~~~~~~~m~~~g~Iv~is  169 (293)
T 3grk_A          107 WGKLDFLVHAIGFSDKDELTGRYIDTSEAN--FTNTM--LI---SVYSLTAVSRRAEKLMADGGSILTLT  169 (293)
T ss_dssp             TSCCSEEEECCCCCCHHHHTSCGGGCCHHH--HHHHH--HH---HTHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred             cCCCCEEEECCccCCcccccccccccCHHH--HHHHH--HH---HHHHHHHHHHHHHHhccCCCEEEEEe
Confidence            358999999965442    11111111111  00000  00   01112245666667777889888765

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=89.51  E-value=1.1  Score=40.33  Aligned_cols=82  Identities=15%  Similarity=0.026  Sum_probs=53.7

Q ss_pred             CCCCCeEEEECCc-ccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------
Q 017476          193 GLRDGFWVDLGTG-SGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------  261 (371)
Q Consensus       193 ~~~~~~VLDlG~G-sG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------  261 (371)
                      ..++++||=.|++ +|.++..+++.+ ..+.+|+.++.+....+.+++.....+   ++.++.+|+.+.-.         
T Consensus        11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~~~~~v~~~~~~~~   87 (271)
T 3ek2_A           11 FLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFG---SELVFPCDVADDAQIDALFASLK   87 (271)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcC---CcEEEECCCCCHHHHHHHHHHHH
Confidence            3456789988874 366666666543 136799999998765555555444443   37889999865311         


Q ss_pred             cCCCceeEEEEcCCCC
Q 017476          262 DVEGKLSGVVSNPPYI  277 (371)
Q Consensus       262 ~~~~~fDlIvsNPPYi  277 (371)
                      ...++.|++|.|.-+.
T Consensus        88 ~~~g~id~lv~nAg~~  103 (271)
T 3ek2_A           88 THWDSLDGLVHSIGFA  103 (271)
T ss_dssp             HHCSCEEEEEECCCCC
T ss_pred             HHcCCCCEEEECCccC
Confidence            1135899999997554

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=89.41  E-value=0.37  Score=45.92  Aligned_cols=45  Identities=18%  Similarity=0.117  Sum_probs=34.9

Q ss_pred             CCCCCCeEEEEC--CcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476          192 DGLRDGFWVDLG--TGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       192 ~~~~~~~VLDlG--~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~  238 (371)
                      ...++.+||-.|  .|.|..++.+++..  +++|+++|.+++.++.+++
T Consensus       164 ~~~~g~~VlV~Gg~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~  210 (353)
T 4dup_A          164 GLTEGESVLIHGGTSGIGTTAIQLARAF--GAEVYATAGSTGKCEACER  210 (353)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCCEEEEEcCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh
Confidence            344677899884  34677888888874  6799999999998888765

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=89.23  E-value=0.33  Score=46.30  Aligned_cols=44  Identities=18%  Similarity=0.055  Sum_probs=34.1

Q ss_pred             CCCCCCeEEEECC--cccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 017476          192 DGLRDGFWVDLGT--GSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA  237 (371)
Q Consensus       192 ~~~~~~~VLDlG~--GsG~~al~la~~~~~~~~V~gvDis~~al~~A~  237 (371)
                      ...++.+||-.|+  |.|..++.+++..  +++|+++|.+++.++.++
T Consensus       167 ~~~~g~~vlV~GasggiG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~  212 (351)
T 1yb5_A          167 CVKAGESVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVL  212 (351)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHH
T ss_pred             CCCCcCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCChhHHHHHH
Confidence            3445779999996  5677777788764  579999999998887654

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=89.18  E-value=0.48  Score=44.56  Aligned_cols=45  Identities=20%  Similarity=0.138  Sum_probs=35.1

Q ss_pred             CCCCCCeEEEECC--cccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476          192 DGLRDGFWVDLGT--GSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       192 ~~~~~~~VLDlG~--GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~  238 (371)
                      ...++.+||-.|+  |.|..++.+++..  +++|+++|.+++.++.+++
T Consensus       142 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~--G~~Vi~~~~~~~~~~~~~~  188 (333)
T 1wly_A          142 KVKPGDYVLIHAAAGGMGHIMVPWARHL--GATVIGTVSTEEKAETARK  188 (333)
T ss_dssp             CCCTTCEEEETTTTSTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence            3445779999994  6777888888874  5799999999988887754

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=89.16  E-value=0.93  Score=42.17  Aligned_cols=66  Identities=14%  Similarity=0.086  Sum_probs=46.7

Q ss_pred             CCCCCCeEEEECCc-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEE
Q 017476          192 DGLRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGV  270 (371)
Q Consensus       192 ~~~~~~~VLDlG~G-sG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlI  270 (371)
                      ...++.+||=.|+| .|.+++.+|+..  +++|++++ +++.++.+++    .|..   .++ .| .+.+   .+.+|+|
T Consensus       139 ~~~~g~~VlV~GaG~vG~~a~qlak~~--Ga~Vi~~~-~~~~~~~~~~----lGa~---~v~-~d-~~~v---~~g~Dvv  203 (315)
T 3goh_A          139 PLTKQREVLIVGFGAVNNLLTQMLNNA--GYVVDLVS-ASLSQALAAK----RGVR---HLY-RE-PSQV---TQKYFAI  203 (315)
T ss_dssp             CCCSCCEEEEECCSHHHHHHHHHHHHH--TCEEEEEC-SSCCHHHHHH----HTEE---EEE-SS-GGGC---CSCEEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEE-ChhhHHHHHH----cCCC---EEE-cC-HHHh---CCCccEE
Confidence            44567899999996 478888899886  56999999 9888887764    4532   222 24 3333   4679998


Q ss_pred             EE
Q 017476          271 VS  272 (371)
Q Consensus       271 vs  272 (371)
                      +-
T Consensus       204 ~d  205 (315)
T 3goh_A          204 FD  205 (315)
T ss_dssp             EC
T ss_pred             EE
Confidence            84

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=89.16  E-value=0.27  Score=45.65  Aligned_cols=44  Identities=16%  Similarity=0.126  Sum_probs=34.7

Q ss_pred             CCCCCeEEEECC--cccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476          193 GLRDGFWVDLGT--GSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       193 ~~~~~~VLDlG~--GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~  238 (371)
                      ..++.+||-.|+  |.|..++.+++..  +++|+++|.+++.++.+++
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~  168 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAM--GLRVLAAASRPEKLALPLA  168 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSGGGSHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHh
Confidence            345779999997  4677888888874  5699999999988777653

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=89.15  E-value=2.1  Score=39.60  Aligned_cols=82  Identities=16%  Similarity=0.048  Sum_probs=56.7

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE  264 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~  264 (371)
                      .++++|=.|+++ .++..+++.+ ..+.+|+.++.+++.++.+.+.+...+.  ++.++..|..+.-.         ...
T Consensus        30 ~gk~vlVTGas~-gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~  106 (301)
T 3tjr_A           30 DGRAAVVTGGAS-GIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGF--DAHGVVCDVRHLDEMVRLADEAFRLL  106 (301)
T ss_dssp             TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHHHhC
Confidence            466788777664 4555555543 1367999999999998888777766653  48999999876311         012


Q ss_pred             CceeEEEEcCCCCCC
Q 017476          265 GKLSGVVSNPPYIPS  279 (371)
Q Consensus       265 ~~fDlIvsNPPYi~~  279 (371)
                      +++|++|.|.-+...
T Consensus       107 g~id~lvnnAg~~~~  121 (301)
T 3tjr_A          107 GGVDVVFSNAGIVVA  121 (301)
T ss_dssp             SSCSEEEECCCCCCC
T ss_pred             CCCCEEEECCCcCCC
Confidence            579999999765543

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=89.04  E-value=1.2  Score=40.76  Aligned_cols=78  Identities=17%  Similarity=0.157  Sum_probs=55.9

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE  264 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~  264 (371)
                      +++.+|=-|.++| ++.++|+.+ ..+++|+.+|.+++.++.+.+.++..|-  ++.+++.|..+.-.         ...
T Consensus         6 ~gKvalVTGas~G-IG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~~~   82 (254)
T 4fn4_A            6 KNKVVIVTGAGSG-IGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGK--EVLGVKADVSKKKDVEEFVRRTFETY   82 (254)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            4667888786666 444444433 1468999999999999988888877763  48999999865311         113


Q ss_pred             CceeEEEEcCC
Q 017476          265 GKLSGVVSNPP  275 (371)
Q Consensus       265 ~~fDlIvsNPP  275 (371)
                      ++.|++|.|-=
T Consensus        83 G~iDiLVNNAG   93 (254)
T 4fn4_A           83 SRIDVLCNNAG   93 (254)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCc
Confidence            78999999964

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=89.04  E-value=1  Score=44.52  Aligned_cols=72  Identities=21%  Similarity=0.289  Sum_probs=46.8

Q ss_pred             CCcccccchH-----HHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCC----CcEEEEEeCCHHHHHHHH
Q 017476          167 EGVFIPRPET-----ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS----KGSIIAVDLNPLAAAVAA  237 (371)
Q Consensus       167 ~~vliPrp~t-----e~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~----~~~V~gvDis~~al~~A~  237 (371)
                      .|-|+--|+.     |.+..++.+.. ....   +..|+|+|.|+|.++..+.+.+..    ..+++.||+|+...+.=+
T Consensus       108 ~GDFiTAPeiS~~FGe~la~~~~~~~-~~~g---~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~  183 (432)
T 4f3n_A          108 GSDFVTAPELSPLFAQTLARPVAQAL-DASG---TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQR  183 (432)
T ss_dssp             --CCSSCGGGHHHHHHHHHHHHHHHH-HHHT---CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHH
T ss_pred             CCCccCchhhhHHHHHHHHHHHHHHH-HhcC---CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHH
Confidence            4566644443     44555555544 2221   458999999999999888765411    248999999998776666


Q ss_pred             HHHHH
Q 017476          238 FNAQR  242 (371)
Q Consensus       238 ~n~~~  242 (371)
                      +++..
T Consensus       184 ~~L~~  188 (432)
T 4f3n_A          184 ETLGA  188 (432)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            66654

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=88.91  E-value=1.8  Score=38.83  Aligned_cols=83  Identities=14%  Similarity=0.092  Sum_probs=54.2

Q ss_pred             CCCeEEEECC-cccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cC
Q 017476          195 RDGFWVDLGT-GSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DV  263 (371)
Q Consensus       195 ~~~~VLDlG~-GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~  263 (371)
                      .++++|=.|+ |+| ++..+++.+ ..+.+|+.+|.+.+.++.+.+.+...+ ..++.++..|+.+.-.         ..
T Consensus        21 ~~k~vlITGasg~G-IG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~   98 (266)
T 3o38_A           21 KGKVVLVTAAAGTG-IGSTTARRALLEGADVVISDYHERRLGETRDQLADLG-LGRVEAVVCDVTSTEAVDALITQTVEK   98 (266)
T ss_dssp             TTCEEEESSCSSSS-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTC-SSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCc-hHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC-CCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence            4567887776 444 333333322 146799999999988887777665443 2469999999865311         01


Q ss_pred             CCceeEEEEcCCCCCC
Q 017476          264 EGKLSGVVSNPPYIPS  279 (371)
Q Consensus       264 ~~~fDlIvsNPPYi~~  279 (371)
                      .+++|++|.|.-+...
T Consensus        99 ~g~id~li~~Ag~~~~  114 (266)
T 3o38_A           99 AGRLDVLVNNAGLGGQ  114 (266)
T ss_dssp             HSCCCEEEECCCCCCC
T ss_pred             hCCCcEEEECCCcCCC
Confidence            2578999999765443

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=88.85  E-value=3.9  Score=38.38  Aligned_cols=109  Identities=13%  Similarity=0.028  Sum_probs=70.9

Q ss_pred             CeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC--CCcEEEEEcCccccccc-C-C-----Cce
Q 017476          197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGL--QDIIEIRQGSWFGKLKD-V-E-----GKL  267 (371)
Q Consensus       197 ~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl--~~~v~~~~gD~~~~l~~-~-~-----~~f  267 (371)
                      ..|++||||-=..+..+..  .++.+++=|| .|+.++..++-+...+.  .++..++.+|+.+.+.. + .     .+.
T Consensus       104 ~QvV~LGaGlDTra~Rl~~--~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~P  180 (310)
T 2uyo_A          104 RQFVILASGLDSRAYRLDW--PTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSAR  180 (310)
T ss_dssp             CEEEEETCTTCCHHHHSCC--CTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSC
T ss_pred             CeEEEeCCCCCchhhhccC--CCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCCC
Confidence            4799999998777544431  1347999999 59999999888876542  45688999998752111 0 0     122


Q ss_pred             eEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCc
Q 017476          268 SGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGE  332 (371)
Q Consensus       268 DlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~  332 (371)
                      -++++              ..+..|-+          -+....+++.+...+.+|+++++++...
T Consensus       181 t~~i~--------------Egvl~Yl~----------~~~~~~ll~~l~~~~~~gs~l~~d~~~~  221 (310)
T 2uyo_A          181 TAWLA--------------EGLLMYLP----------ATAQDGLFTEIGGLSAVGSRIAVETSPL  221 (310)
T ss_dssp             EEEEE--------------CSCGGGSC----------HHHHHHHHHHHHHTCCTTCEEEEECCCT
T ss_pred             EEEEE--------------echHhhCC----------HHHHHHHHHHHHHhCCCCeEEEEEecCC
Confidence            23443              11222222          1334578888888889999999998543

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=88.51  E-value=0.66  Score=43.27  Aligned_cols=89  Identities=16%  Similarity=0.160  Sum_probs=58.3

Q ss_pred             eEEEECC--cccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccC-CCceeEEEEcC
Q 017476          198 FWVDLGT--GSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV-EGKLSGVVSNP  274 (371)
Q Consensus       198 ~VLDlG~--GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~-~~~fDlIvsNP  274 (371)
                      +||=.|+  |.|.+++.+|+..  +++|+++|.+++-++.+++    .|...  .+-..+... .... .+.+|+|+-+ 
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~--vi~~~~~~~-~~~~~~~~~d~v~d~-  218 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKL--GYQVAAVSGRESTHGYLKS----LGANR--ILSRDEFAE-SRPLEKQLWAGAIDT-  218 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCGGGHHHHHH----HTCSE--EEEGGGSSC-CCSSCCCCEEEEEES-
T ss_pred             eEEEECCCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCCE--EEecCCHHH-HHhhcCCCccEEEEC-
Confidence            4898886  5788999999975  5699999999998888765    45431  122222111 1111 2568887752 


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE  328 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle  328 (371)
                                              .    |-    ..++.+.+.|+++|.+++.
T Consensus       219 ------------------------~----g~----~~~~~~~~~l~~~G~iv~~  240 (324)
T 3nx4_A          219 ------------------------V----GD----KVLAKVLAQMNYGGCVAAC  240 (324)
T ss_dssp             ------------------------S----CH----HHHHHHHHTEEEEEEEEEC
T ss_pred             ------------------------C----Cc----HHHHHHHHHHhcCCEEEEE
Confidence                                    0    11    2556677899999998874

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=88.32  E-value=2.7  Score=37.66  Aligned_cols=80  Identities=20%  Similarity=0.164  Sum_probs=54.0

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE  264 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~  264 (371)
                      .++++|=.|+++ .++..+++.+ ..+.+|+.+|.+.+.++.+.+.+...+  .++.++.+|..+.-.         ...
T Consensus        11 ~~k~vlVTGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~   87 (256)
T 3gaf_A           11 NDAVAIVTGAAA-GIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAG--GKAIGLECNVTDEQHREAVIKAALDQF   87 (256)
T ss_dssp             TTCEEEECSCSS-HHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            456777766554 4555555433 135789999999988887777776655  358999999865311         012


Q ss_pred             CceeEEEEcCCCC
Q 017476          265 GKLSGVVSNPPYI  277 (371)
Q Consensus       265 ~~fDlIvsNPPYi  277 (371)
                      ++.|++|.|.-+.
T Consensus        88 g~id~lv~nAg~~  100 (256)
T 3gaf_A           88 GKITVLVNNAGGG  100 (256)
T ss_dssp             SCCCEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            5799999996554

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=88.05  E-value=3  Score=37.81  Aligned_cols=124  Identities=19%  Similarity=0.145  Sum_probs=68.1

Q ss_pred             CCeEEEECCcccHHHHHHHHHh-CCCcEEEEE-eCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476          196 DGFWVDLGTGSGAIAIGIARVL-GSKGSIIAV-DLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE  264 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~-~~~~~V~gv-Dis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~  264 (371)
                      ++++|=.|+++| ++.++++.+ ..+.+|+.+ ..+.+.++...+.+...+  .++.++..|+.+.-.         ...
T Consensus        27 ~k~~lVTGas~G-IG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~  103 (267)
T 3u5t_A           27 NKVAIVTGASRG-IGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAG--GKALTAQADVSDPAAVRRLFATAEEAF  103 (267)
T ss_dssp             CCEEEEESCSSH-HHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            457777776554 444444432 125688877 455666666655555554  358999999865311         112


Q ss_pred             CceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          265 GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       265 ~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      ++.|++|.|.-+.....+...+.+.  ++-....     -+.....+++.+.+.++++|.+++..
T Consensus       104 g~iD~lvnnAG~~~~~~~~~~~~~~--~~~~~~v-----N~~g~~~~~~~~~~~~~~~g~iv~is  161 (267)
T 3u5t_A          104 GGVDVLVNNAGIMPLTTIAETGDAV--FDRVIAV-----NLKGTFNTLREAAQRLRVGGRIINMS  161 (267)
T ss_dssp             SCEEEEEECCCCCCCCCGGGCCHHH--HHHHHHH-----HHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHH--HHHHHHH-----HHHHHHHHHHHHHHHHhhCCeEEEEe
Confidence            5899999997654433322222221  1000000     01112245666677778888888764

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=87.93  E-value=1.8  Score=39.95  Aligned_cols=125  Identities=12%  Similarity=0.069  Sum_probs=70.4

Q ss_pred             CCCeEEEECCcc-cHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cC
Q 017476          195 RDGFWVDLGTGS-GAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DV  263 (371)
Q Consensus       195 ~~~~VLDlG~Gs-G~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~  263 (371)
                      .++++|=.|+++ ..++..+++.+ ..+.+|+.+|.++...+.+.+.....+   ++.++++|+.+.-.         ..
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~~  105 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLG---VKLTVPCDVSDAESVDNMFKVLAEE  105 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHT---CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC---CeEEEEcCCCCHHHHHHHHHHHHHH
Confidence            467888888754 34555554433 146799999999866655555554444   36789999865311         11


Q ss_pred             CCceeEEEEcCCCCCC----CCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          264 EGKLSGVVSNPPYIPS----DDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       264 ~~~fDlIvsNPPYi~~----~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      .+++|++|.|--+...    ..+...+.+.  ++-....     -+.....+++.+...++.+|.+++..
T Consensus       106 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~--~~~~~~v-----N~~g~~~l~~~~~~~m~~~g~IV~is  168 (296)
T 3k31_A          106 WGSLDFVVHAVAFSDKNELKGRYVDTSLGN--FLTSMHI-----SCYSFTYIASKAEPLMTNGGSILTLS  168 (296)
T ss_dssp             HSCCSEEEECCCCCCHHHHTSCGGGCCHHH--HHHHHHH-----HTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred             cCCCCEEEECCCcCCcccccCChhhCCHHH--HHHHHHH-----HHHHHHHHHHHHHHHhhcCCEEEEEE
Confidence            2579999999654421    1111111110  0000000     01122356677778888889888765

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=87.89  E-value=3.2  Score=37.51  Aligned_cols=126  Identities=13%  Similarity=0.061  Sum_probs=71.2

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeC-CHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------c
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDL-NPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------D  262 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDi-s~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~  262 (371)
                      ..++++|=.|++ |.++..+++.+ ..+.+|+.++. +.+.++...+.+...+  .++.++..|..+.-.         .
T Consensus        16 l~~k~~lVTGas-~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~   92 (270)
T 3is3_A           16 LDGKVALVTGSG-RGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALG--SDAIAIKADIRQVPEIVKLFDQAVA   92 (270)
T ss_dssp             CTTCEEEESCTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            345677777654 55555555543 14678988776 4556666666565554  358999999865311         0


Q ss_pred             CCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          263 VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       263 ~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      ..++.|++|.|.-......+..++.+...  -...  .   -+.....+++.+.+.++++|.+++..
T Consensus        93 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~--~~~~--~---N~~g~~~~~~~~~~~~~~~g~iv~is  152 (270)
T 3is3_A           93 HFGHLDIAVSNSGVVSFGHLKDVTEEEFD--RVFS--L---NTRGQFFVAREAYRHLTEGGRIVLTS  152 (270)
T ss_dssp             HHSCCCEEECCCCCCCCCCGGGCCHHHHH--HHHH--H---HTHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHH--HHHH--H---HhHHHHHHHHHHHHHHhcCCeEEEEe
Confidence            12578999999765543333222222111  0000  0   01112245666677888889888764

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=87.73  E-value=3.3  Score=37.09  Aligned_cols=127  Identities=15%  Similarity=0.082  Sum_probs=70.2

Q ss_pred             CCCeEEEECCccc-HHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cC
Q 017476          195 RDGFWVDLGTGSG-AIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DV  263 (371)
Q Consensus       195 ~~~~VLDlG~GsG-~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~  263 (371)
                      .++++|=.|++.| .++..+++.+ ..+.+|+.++.+....+.+.+.....+- .++.++.+|+.+.-.         ..
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~   84 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDR-NDSIILPCDVTNDAEIETCFASIKEQ   84 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSS-CCCEEEECCCSSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCC-CCceEEeCCCCCHHHHHHHHHHHHHH
Confidence            4568888886632 2444444332 1367999999987666655555444432 258999999876421         01


Q ss_pred             CCceeEEEEcCCCCCC----CCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          264 EGKLSGVVSNPPYIPS----DDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       264 ~~~fDlIvsNPPYi~~----~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      .+++|++|.|.-+...    ..+.....+.  ++-....     -+.....+++.+...++++|.+++..
T Consensus        85 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~--~~~~~~~-----n~~~~~~l~~~~~~~~~~~g~iv~is  147 (266)
T 3oig_A           85 VGVIHGIAHCIAFANKEELVGEYLNTNRDG--FLLAHNI-----SSYSLTAVVKAARPMMTEGGSIVTLT  147 (266)
T ss_dssp             HSCCCEEEECCCCCCGGGGSSCGGGCCHHH--HHHHHHH-----HTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred             hCCeeEEEEccccccccccccchhhccHHH--HHHHHHH-----hHHHHHHHHHHHHhhcCCCceEEEEe
Confidence            2579999999765431    1111111110  0000000     01112246677778888889888765

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=87.68  E-value=6.3  Score=36.08  Aligned_cols=81  Identities=10%  Similarity=-0.110  Sum_probs=54.1

Q ss_pred             CCeEEEECCcccHHHHHHHHHhC----CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------c
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLG----SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------D  262 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~----~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~  262 (371)
                      ++++|=.|++ |.++..+++.+.    ...+|+.++.+.+.++.+.+.+.......++.++.+|+.+.-.         .
T Consensus        33 ~k~~lVTGas-~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  111 (287)
T 3rku_A           33 KKTVLITGAS-AGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQ  111 (287)
T ss_dssp             TCEEEEESTT-SHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCG
T ss_pred             CCEEEEecCC-ChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            5578877755 455555555431    1239999999999888777776654333468999999865321         1


Q ss_pred             CCCceeEEEEcCCCC
Q 017476          263 VEGKLSGVVSNPPYI  277 (371)
Q Consensus       263 ~~~~fDlIvsNPPYi  277 (371)
                      ..++.|++|.|.=+.
T Consensus       112 ~~g~iD~lVnnAG~~  126 (287)
T 3rku_A          112 EFKDIDILVNNAGKA  126 (287)
T ss_dssp             GGCSCCEEEECCCCC
T ss_pred             hcCCCCEEEECCCcC
Confidence            125799999996543

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=87.68  E-value=2.6  Score=37.71  Aligned_cols=80  Identities=18%  Similarity=0.031  Sum_probs=55.8

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE  264 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~  264 (371)
                      .++++|=.|+++| ++..+++.+ ..+.+|+.+|.+++.++.+.+.+...+  .++.++.+|+.+.-.         .. 
T Consensus         6 ~~k~vlVTGas~G-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~-   81 (252)
T 3h7a_A            6 RNATVAVIGAGDY-IGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAG--GRIVARSLDARNEDEVTAFLNAADAH-   81 (252)
T ss_dssp             CSCEEEEECCSSH-HHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECcCCCHHHHHHHHHHHHhh-
Confidence            3567777776654 555555543 146799999999988887777776664  469999999865311         12 


Q ss_pred             CceeEEEEcCCCCC
Q 017476          265 GKLSGVVSNPPYIP  278 (371)
Q Consensus       265 ~~fDlIvsNPPYi~  278 (371)
                      +++|++|.|.-...
T Consensus        82 g~id~lv~nAg~~~   95 (252)
T 3h7a_A           82 APLEVTIFNVGANV   95 (252)
T ss_dssp             SCEEEEEECCCCCC
T ss_pred             CCceEEEECCCcCC
Confidence            58999999976544

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=87.61  E-value=0.51  Score=44.90  Aligned_cols=44  Identities=14%  Similarity=0.114  Sum_probs=33.6

Q ss_pred             CCCCCCeEEEECC--cccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 017476          192 DGLRDGFWVDLGT--GSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA  237 (371)
Q Consensus       192 ~~~~~~~VLDlG~--GsG~~al~la~~~~~~~~V~gvDis~~al~~A~  237 (371)
                      ...++.+||-.|+  |.|..++.+++..  +++|+++|.+++.++.++
T Consensus       159 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~  204 (354)
T 2j8z_A          159 NVQAGDYVLIHAGLSGVGTAAIQLTRMA--GAIPLVTAGSQKKLQMAE  204 (354)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHH
Confidence            3445778999984  5667777777764  579999999998888774

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=87.58  E-value=0.96  Score=50.78  Aligned_cols=78  Identities=17%  Similarity=0.196  Sum_probs=55.0

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccc----------------
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK----------------  259 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~----------------  259 (371)
                      ..+++||+||.|.+.+.+.+. +-...+.++|+++.|++.-+.|.     ++ ..++.+|..+.                
T Consensus       851 ~l~viDLFsG~GGlslGfe~A-G~~~vv~avEid~~A~~ty~~N~-----p~-~~~~~~DI~~l~~~~~~gdi~~~~~~~  923 (1330)
T 3av4_A          851 KLRTLDVFSGCGGLSEGFHQA-GISETLWAIEMWDPAAQAFRLNN-----PG-TTVFTEDCNVLLKLVMAGEVTNSLGQR  923 (1330)
T ss_dssp             CEEEEEETCTTSHHHHHHHHT-TSEEEEEEECCSHHHHHHHHHHC-----TT-SEEECSCHHHHHHHHTTTCSBCSSCCB
T ss_pred             CceEEecccCccHHHHHHHHC-CCCceEEEEECCHHHHHHHHHhC-----CC-CcEeeccHHHHhHhhhccchhhhhhhh
Confidence            458999999999999998774 11135889999999999888773     22 45556554211                


Q ss_pred             cccCCCceeEEEEcCCCCCCCC
Q 017476          260 LKDVEGKLSGVVSNPPYIPSDD  281 (371)
Q Consensus       260 l~~~~~~fDlIvsNPPYi~~~~  281 (371)
                      ++ ..+.+|+|+.-||+-+.+.
T Consensus       924 lp-~~~~vDvl~GGpPCQ~FS~  944 (1330)
T 3av4_A          924 LP-QKGDVEMLCGGPPCQGFSG  944 (1330)
T ss_dssp             CC-CTTTCSEEEECCCCTTTCS
T ss_pred             cc-ccCccceEEecCCCccccc
Confidence            11 1247899999999876543

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=87.52  E-value=4.5  Score=35.66  Aligned_cols=81  Identities=12%  Similarity=0.042  Sum_probs=55.7

Q ss_pred             CCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc---------ccCCC
Q 017476          196 DGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL---------KDVEG  265 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l---------~~~~~  265 (371)
                      ++++|=.| |+|.++..+++.+ ..+.+|+.++.++..++...+.++..+.  ++.++..|..+.-         ....+
T Consensus         5 ~k~vlITG-as~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (247)
T 3lyl_A            5 EKVALVTG-ASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGF--KARGLVLNISDIESIQNFFAEIKAENL   81 (247)
T ss_dssp             TCEEEESS-CSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            45677666 4555666665543 1367999999999988877777766653  4899999986531         11135


Q ss_pred             ceeEEEEcCCCCCC
Q 017476          266 KLSGVVSNPPYIPS  279 (371)
Q Consensus       266 ~fDlIvsNPPYi~~  279 (371)
                      ++|++|.|.-+...
T Consensus        82 ~id~li~~Ag~~~~   95 (247)
T 3lyl_A           82 AIDILVNNAGITRD   95 (247)
T ss_dssp             CCSEEEECCCCCCC
T ss_pred             CCCEEEECCCCCCC
Confidence            79999999765543

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=87.46  E-value=4.4  Score=36.17  Aligned_cols=83  Identities=13%  Similarity=0.041  Sum_probs=54.3

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEcCcccccc---------cC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQ-DIIEIRQGSWFGKLK---------DV  263 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~-~~v~~~~gD~~~~l~---------~~  263 (371)
                      .++++|=.|+++| ++..+++.+. .+.+|+.++.+++.++.+.+.+....-. .++.++..|+.+.-.         ..
T Consensus         6 ~~k~~lVTGas~G-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (250)
T 3nyw_A            6 QKGLAIITGASQG-IGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQK   84 (250)
T ss_dssp             CCCEEEEESTTSH-HHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHh
Confidence            3557777776554 4444444331 2579999999999888777766654322 458899999865311         11


Q ss_pred             CCceeEEEEcCCCCC
Q 017476          264 EGKLSGVVSNPPYIP  278 (371)
Q Consensus       264 ~~~fDlIvsNPPYi~  278 (371)
                      .++.|++|.|.-...
T Consensus        85 ~g~iD~lvnnAg~~~   99 (250)
T 3nyw_A           85 YGAVDILVNAAAMFM   99 (250)
T ss_dssp             HCCEEEEEECCCCCC
T ss_pred             cCCCCEEEECCCcCC
Confidence            257999999976543

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=87.43  E-value=3.5  Score=37.15  Aligned_cols=83  Identities=10%  Similarity=0.006  Sum_probs=56.0

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc-----cCCCcee
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-----DVEGKLS  268 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~-----~~~~~fD  268 (371)
                      .++++|=.|+ +|.++..+++.+ ..+.+|+.+|.+++.++.+.+.+...+...++.++..|..+.-.     ...++.|
T Consensus         9 ~~k~~lVTGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id   87 (267)
T 3t4x_A            9 KGKTALVTGS-TAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVD   87 (267)
T ss_dssp             TTCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCS
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCC
Confidence            4557776664 455666666543 14679999999998887777776665444568889999865311     1135799


Q ss_pred             EEEEcCCCCC
Q 017476          269 GVVSNPPYIP  278 (371)
Q Consensus       269 lIvsNPPYi~  278 (371)
                      ++|.|.-...
T Consensus        88 ~lv~nAg~~~   97 (267)
T 3t4x_A           88 ILINNLGIFE   97 (267)
T ss_dssp             EEEECCCCCC
T ss_pred             EEEECCCCCC
Confidence            9999965543

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=87.41  E-value=0.21  Score=59.74  Aligned_cols=104  Identities=23%  Similarity=0.167  Sum_probs=50.9

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCC----CcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEE
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGS----KGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV  271 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~----~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIv  271 (371)
                      ..+||++|.|+|..+..+.+.+..    ....+..|+|+...+.|++.++...    +..-.-|..++.......||+||
T Consensus      1241 ~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~d----i~~~~~d~~~~~~~~~~~ydlvi 1316 (2512)
T 2vz8_A         1241 KMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLH----VTQGQWDPANPAPGSLGKADLLV 1316 (2512)
T ss_dssp             EEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHT----EEEECCCSSCCCC-----CCEEE
T ss_pred             CceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcc----cccccccccccccCCCCceeEEE
Confidence            458999999999877666665522    2368889999888877777765432    22211122111000135699999


Q ss_pred             EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      +.-              +. |           ........+.++.+.|||||++++..
T Consensus      1317 a~~--------------vl-~-----------~t~~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A         1317 CNC--------------AL-A-----------TLGDPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp             EEC--------------C--------------------------------CCEEEEEE
T ss_pred             Ecc--------------cc-c-----------ccccHHHHHHHHHHhcCCCcEEEEEe
Confidence            731              10 0           01122356677889999999988753

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=87.35  E-value=4.8  Score=36.33  Aligned_cols=123  Identities=16%  Similarity=0.133  Sum_probs=71.6

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCC------------HHHHHHHHHHHHHcCCCCcEEEEEcCcccccc
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLN------------PLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK  261 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis------------~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~  261 (371)
                      .++++|=.|+++ .++..+++.+ ..+.+|+.+|.+            .+.++.+...+...+  .++.++..|+.+.-.
T Consensus         9 ~gk~vlVTGas~-gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~   85 (287)
T 3pxx_A            9 QDKVVLVTGGAR-GQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG--RKAYTAEVDVRDRAA   85 (287)
T ss_dssp             TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT--SCEEEEECCTTCHHH
T ss_pred             CCCEEEEeCCCC-hHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcC--CceEEEEccCCCHHH
Confidence            456788777654 4555555443 146799999987            677776666666554  358999999865311


Q ss_pred             ---------cCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          262 ---------DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       262 ---------~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                               ...+++|++|.|.-+.... .. ++.+.  ++-....     -+.....+++.+..+++.+|.+++..
T Consensus        86 v~~~~~~~~~~~g~id~lv~nAg~~~~~-~~-~~~~~--~~~~~~~-----N~~g~~~l~~~~~~~~~~~g~iv~is  153 (287)
T 3pxx_A           86 VSRELANAVAEFGKLDVVVANAGICPLG-AH-LPVQA--FADAFDV-----DFVGVINTVHAALPYLTSGASIITTG  153 (287)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCC-TT-CCTHH--HHHHHHH-----HTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCcCccc-Cc-CCHHH--HHHHhhh-----hhhhhHHHHHHHHHHhhcCcEEEEec
Confidence                     0125799999996554322 10 11110  0000000     01122356677778888888887754

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=87.30  E-value=0.34  Score=46.13  Aligned_cols=68  Identities=12%  Similarity=0.057  Sum_probs=40.6

Q ss_pred             CeEEEECCc-ccHHH-HHHH-HHhCCCcE-EEEEeCCHH---HHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeE
Q 017476          197 GFWVDLGTG-SGAIA-IGIA-RVLGSKGS-IIAVDLNPL---AAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSG  269 (371)
Q Consensus       197 ~~VLDlG~G-sG~~a-l~la-~~~~~~~~-V~gvDis~~---al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDl  269 (371)
                      .+||-+|+| .|.++ +.+| +.+  +++ |+++|.+++   .++.+++    .|.. .+.....|+.+ +....+.+|+
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k~~--Ga~~Vi~~~~~~~~~~~~~~~~~----lGa~-~v~~~~~~~~~-i~~~~gg~Dv  245 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVDDK--GYENLYCLGRRDRPDPTIDIIEE----LDAT-YVDSRQTPVED-VPDVYEQMDF  245 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHCTT--CCCEEEEEECCCSSCHHHHHHHH----TTCE-EEETTTSCGGG-HHHHSCCEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHc--CCcEEEEEeCCcccHHHHHHHHH----cCCc-ccCCCccCHHH-HHHhCCCCCE
Confidence            799999975 36666 7777 653  455 999999987   7777653    4532 12111112222 2211236899


Q ss_pred             EEE
Q 017476          270 VVS  272 (371)
Q Consensus       270 Ivs  272 (371)
                      |+-
T Consensus       246 vid  248 (357)
T 2b5w_A          246 IYE  248 (357)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            885

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=87.06  E-value=4  Score=37.14  Aligned_cols=79  Identities=18%  Similarity=0.157  Sum_probs=52.0

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeC-CHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDL-NPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DV  263 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDi-s~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~  263 (371)
                      .++++|=.|+++ .++..+++.+ ..+.+|+.+|. +++.++...+.+...+  .++.++++|+.+.-.         ..
T Consensus        28 ~~k~~lVTGas~-GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  104 (280)
T 4da9_A           28 ARPVAIVTGGRR-GIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLG--ARVIFLRADLADLSSHQATVDAVVAE  104 (280)
T ss_dssp             CCCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTT--CCEEEEECCTTSGGGHHHHHHHHHHH
T ss_pred             CCCEEEEecCCC-HHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            456777777554 4555555443 14679999995 7777776666666555  359999999876421         01


Q ss_pred             CCceeEEEEcCCC
Q 017476          264 EGKLSGVVSNPPY  276 (371)
Q Consensus       264 ~~~fDlIvsNPPY  276 (371)
                      .++.|++|.|.-+
T Consensus       105 ~g~iD~lvnnAg~  117 (280)
T 4da9_A          105 FGRIDCLVNNAGI  117 (280)
T ss_dssp             HSCCCEEEEECC-
T ss_pred             cCCCCEEEECCCc
Confidence            2579999999754

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=86.39  E-value=5  Score=36.17  Aligned_cols=81  Identities=14%  Similarity=0.097  Sum_probs=56.2

Q ss_pred             CCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCCC
Q 017476          196 DGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG  265 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~~  265 (371)
                      ++++|=.| |+|.++..+++.+ ..+.+|++++.++..++...+.+...+...++.++.+|+.+.-.         ...+
T Consensus        32 ~k~vlVTG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  110 (279)
T 1xg5_A           32 DRLALVTG-ASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS  110 (279)
T ss_dssp             TCEEEEES-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence            45777776 5566666666543 13679999999998887776667666655678999999865321         0014


Q ss_pred             ceeEEEEcCCCC
Q 017476          266 KLSGVVSNPPYI  277 (371)
Q Consensus       266 ~fDlIvsNPPYi  277 (371)
                      .+|+||.|.-+.
T Consensus       111 ~iD~vi~~Ag~~  122 (279)
T 1xg5_A          111 GVDICINNAGLA  122 (279)
T ss_dssp             CCSEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            799999987554

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=86.08  E-value=0.72  Score=43.75  Aligned_cols=44  Identities=14%  Similarity=0.046  Sum_probs=32.8

Q ss_pred             CCCC--CeEEEECC--cccHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHH
Q 017476          193 GLRD--GFWVDLGT--GSGAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       193 ~~~~--~~VLDlG~--GsG~~al~la~~~~~~~-~V~gvDis~~al~~A~~  238 (371)
                      ..++  .+||-.|+  |.|..++.+++..  ++ +|+++|.+++.++.+++
T Consensus       156 ~~~g~~~~vlI~GasggiG~~~~~~a~~~--Ga~~Vi~~~~~~~~~~~~~~  204 (357)
T 2zb4_A          156 ITAGSNKTMVVSGAAGACGSVAGQIGHFL--GCSRVVGICGTHEKCILLTS  204 (357)
T ss_dssp             CCTTSCCEEEESSTTBHHHHHHHHHHHHT--TCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCccEEEEECCCcHHHHHHHHHHHHC--CCCeEEEEeCCHHHHHHHHH
Confidence            3456  79999997  4566677777764  56 99999999987776654

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=86.06  E-value=1  Score=42.55  Aligned_cols=95  Identities=17%  Similarity=0.071  Sum_probs=59.2

Q ss_pred             CCCCCCeEEEECC--cccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc--CCCce
Q 017476          192 DGLRDGFWVDLGT--GSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD--VEGKL  267 (371)
Q Consensus       192 ~~~~~~~VLDlG~--GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~--~~~~f  267 (371)
                      ...++.+||-.|+  |.|..++.+++..  +++|+++ .+++.++.+++    .|... +. ...|+.+.+..  ....+
T Consensus       147 ~~~~g~~VlV~Ga~g~iG~~~~q~a~~~--Ga~Vi~~-~~~~~~~~~~~----lGa~~-i~-~~~~~~~~~~~~~~~~g~  217 (343)
T 3gaz_A          147 QVQDGQTVLIQGGGGGVGHVAIQIALAR--GARVFAT-ARGSDLEYVRD----LGATP-ID-ASREPEDYAAEHTAGQGF  217 (343)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEE-ECHHHHHHHHH----HTSEE-EE-TTSCHHHHHHHHHTTSCE
T ss_pred             CCCCCCEEEEecCCCHHHHHHHHHHHHC--CCEEEEE-eCHHHHHHHHH----cCCCE-ec-cCCCHHHHHHHHhcCCCc
Confidence            3446789999993  4678888888874  6799999 88888777654    45432 22 11122111111  12469


Q ss_pred             eEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476          268 SGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE  328 (371)
Q Consensus       268 DlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle  328 (371)
                      |+|+-+-                         |+        ..++.+.+.|+++|.+++.
T Consensus       218 D~vid~~-------------------------g~--------~~~~~~~~~l~~~G~iv~~  245 (343)
T 3gaz_A          218 DLVYDTL-------------------------GG--------PVLDASFSAVKRFGHVVSC  245 (343)
T ss_dssp             EEEEESS-------------------------CT--------HHHHHHHHHEEEEEEEEES
T ss_pred             eEEEECC-------------------------Cc--------HHHHHHHHHHhcCCeEEEE
Confidence            9988631                         00        2455666789999998864

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=85.96  E-value=0.68  Score=43.82  Aligned_cols=94  Identities=16%  Similarity=0.124  Sum_probs=58.3

Q ss_pred             CCCeEEEEC-Cc-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccC-CCceeEEE
Q 017476          195 RDGFWVDLG-TG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV-EGKLSGVV  271 (371)
Q Consensus       195 ~~~~VLDlG-~G-sG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~-~~~fDlIv  271 (371)
                      ++.+||=.| +| .|..++.+++..  +++|+++|.+++.++.+++    .|... +--...|+.+.+... .+.+|+|+
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~-vi~~~~~~~~~~~~~~~~g~Dvv~  222 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAY--GLRVITTASRNETIEWTKK----MGADI-VLNHKESLLNQFKTQGIELVDYVF  222 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEECCSHHHHHHHHH----HTCSE-EECTTSCHHHHHHHHTCCCEEEEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCcE-EEECCccHHHHHHHhCCCCccEEE
Confidence            567899884 43 577888888874  5799999999998888775    35321 111111222211111 24699988


Q ss_pred             EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEE
Q 017476          272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF  327 (371)
Q Consensus       272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvl  327 (371)
                      -+-.                             -   ...++.+.+.|+++|.++.
T Consensus       223 d~~g-----------------------------~---~~~~~~~~~~l~~~G~iv~  246 (346)
T 3fbg_A          223 CTFN-----------------------------T---DMYYDDMIQLVKPRGHIAT  246 (346)
T ss_dssp             ESSC-----------------------------H---HHHHHHHHHHEEEEEEEEE
T ss_pred             ECCC-----------------------------c---hHHHHHHHHHhccCCEEEE
Confidence            6210                             0   1345666788999999865

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=85.84  E-value=5.2  Score=35.93  Aligned_cols=125  Identities=10%  Similarity=0.017  Sum_probs=71.1

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCC---HHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLN---PLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------  261 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis---~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------  261 (371)
                      .++++|=.|++ |.++..+++.+. .+.+|+.++.+   .+.++.+.+.+...+  .++.++..|+.+.-.         
T Consensus        10 ~~k~vlVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~   86 (262)
T 3ksu_A           10 KNKVIVIAGGI-KNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQG--AKVALYQSDLSNEEEVAKLFDFAE   86 (262)
T ss_dssp             TTCEEEEETCS-SHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTT--CEEEEEECCCCSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHH
Confidence            45678877755 556777777653 46789998764   344554444444433  468999999865311         


Q ss_pred             cCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          262 DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       262 ~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      ...++.|++|.|.-......+...+.+...  -....     -+.....+++.+...|+++|.+++..
T Consensus        87 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~--~~~~~-----N~~g~~~l~~~~~~~m~~~g~iv~is  147 (262)
T 3ksu_A           87 KEFGKVDIAINTVGKVLKKPIVETSEAEFD--AMDTI-----NNKVAYFFIKQAAKHMNPNGHIITIA  147 (262)
T ss_dssp             HHHCSEEEEEECCCCCCSSCGGGCCHHHHH--HHHHH-----HHHHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHHH--HHHHH-----HhHHHHHHHHHHHHhhcCCCEEEEEe
Confidence            112579999999765433332222221100  00000     01122356677778888888888764

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=85.83  E-value=3.8  Score=36.79  Aligned_cols=125  Identities=15%  Similarity=0.147  Sum_probs=70.3

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEE-eCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAV-DLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DV  263 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gv-Dis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~  263 (371)
                      .++++|=.|+++| ++..+++.+ ..+.+|+.+ +.+.+..+.+.+.+...+  .++.++.+|+.+.-.         ..
T Consensus         7 ~~k~vlVTGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (259)
T 3edm_A            7 TNRTIVVAGAGRD-IGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLG--RSALAIKADLTNAAEVEAAISAAADK   83 (259)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTT--SCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            4567887776554 555555543 136788888 777777666666665444  358899999865311         01


Q ss_pred             CCceeEEEEcCCCC-CCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          264 EGKLSGVVSNPPYI-PSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       264 ~~~fDlIvsNPPYi-~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      .++.|++|.|.=.. ....+...+.+...  -....     -+.....+++.+...++++|.+++..
T Consensus        84 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~--~~~~v-----N~~g~~~~~~~~~~~~~~~g~iv~is  143 (259)
T 3edm_A           84 FGEIHGLVHVAGGLIARKTIAEMDEAFWH--QVLDV-----NLTSLFLTAKTALPKMAKGGAIVTFS  143 (259)
T ss_dssp             HCSEEEEEECCCCCCCCCCTTTCCHHHHH--HHHHH-----HTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             hCCCCEEEECCCccCCCCChhhCCHHHHH--HHHHH-----HHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence            25799999996432 22222222221100  00000     01122356677777888888887754

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=85.82  E-value=5.4  Score=36.12  Aligned_cols=81  Identities=25%  Similarity=0.279  Sum_probs=54.8

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEcCcccccc---------cC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQ-DIIEIRQGSWFGKLK---------DV  263 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~-~~v~~~~gD~~~~l~---------~~  263 (371)
                      .++++|=.|.+ |.++..+++.+ ..+.+|+.+|.+++.++.+.+.+...+.. .++.++.+|..+.-.         ..
T Consensus        10 ~~k~vlVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   88 (281)
T 3svt_A           10 QDRTYLVTGGG-SGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAW   88 (281)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            45678877754 55555555543 14679999999999888777777655432 268999999865311         01


Q ss_pred             CCceeEEEEcCCC
Q 017476          264 EGKLSGVVSNPPY  276 (371)
Q Consensus       264 ~~~fDlIvsNPPY  276 (371)
                      .+++|++|.|.-.
T Consensus        89 ~g~id~lv~nAg~  101 (281)
T 3svt_A           89 HGRLHGVVHCAGG  101 (281)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            2578999998654

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=85.80  E-value=0.27  Score=46.61  Aligned_cols=42  Identities=26%  Similarity=0.275  Sum_probs=33.6

Q ss_pred             CCCeEEEECCcc-cHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHH
Q 017476          195 RDGFWVDLGTGS-GAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       195 ~~~~VLDlG~Gs-G~~al~la~~~~~~~-~V~gvDis~~al~~A~~  238 (371)
                      ++.+||-+|+|. |..++.+|+..  ++ +|+++|.+++.++.+++
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~--Ga~~Vi~~~~~~~~~~~~~~  207 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRAS--GAGPILVSDPNPYRLAFARP  207 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHT--TCCSEEEECSCHHHHGGGTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH
Confidence            678999999863 67788888874  55 89999999988777654

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=85.71  E-value=3.6  Score=37.27  Aligned_cols=81  Identities=21%  Similarity=0.197  Sum_probs=54.7

Q ss_pred             CCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCCC
Q 017476          196 DGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG  265 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~~  265 (371)
                      ++++|=.|++ |.++..+++.+ ..+.+|+.++.+++.++.+.+.+...+  .++.++..|+.+.-.         ...+
T Consensus         4 ~k~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   80 (264)
T 3tfo_A            4 DKVILITGAS-GGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAG--GTALAQVLDVTDRHSVAAFAQAAVDTWG   80 (264)
T ss_dssp             TCEEEESSTT-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4466666655 55555555543 246799999999998887777776654  358899999865311         1125


Q ss_pred             ceeEEEEcCCCCCC
Q 017476          266 KLSGVVSNPPYIPS  279 (371)
Q Consensus       266 ~fDlIvsNPPYi~~  279 (371)
                      +.|++|.|.-+...
T Consensus        81 ~iD~lVnnAG~~~~   94 (264)
T 3tfo_A           81 RIDVLVNNAGVMPL   94 (264)
T ss_dssp             CCCEEEECCCCCCC
T ss_pred             CCCEEEECCCCCCC
Confidence            79999999765443

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=85.65  E-value=6.5  Score=35.56  Aligned_cols=125  Identities=14%  Similarity=0.032  Sum_probs=70.1

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCC-HHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLN-PLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DV  263 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis-~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~  263 (371)
                      .++++|=.|+++ .++..+++.+ ..+.+|+.++.+ .+.++...+.+...+  .++.++.+|..+.-.         ..
T Consensus        30 ~gk~~lVTGas~-GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  106 (271)
T 3v2g_A           30 AGKTAFVTGGSR-GIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAG--GRAVAIRADNRDAEAIEQAIRETVEA  106 (271)
T ss_dssp             TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            466788887654 4555555443 146789888655 455555555555554  358999999865311         11


Q ss_pred             CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          264 EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       264 ~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      .++.|++|.|.-+.....+...+.+...  -....     -+.....+++.+.+.++++|.+++..
T Consensus       107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~--~~~~v-----N~~g~~~~~~~~~~~m~~~g~iv~is  165 (271)
T 3v2g_A          107 LGGLDILVNSAGIWHSAPLEETTVADFD--EVMAV-----NFRAPFVAIRSASRHLGDGGRIITIG  165 (271)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHH--HHHHH-----HTHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred             cCCCcEEEECCCCCCCCChhhCCHHHHH--HHHHH-----HhHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            2579999999765443332222222110  00000     01112245666777888888887763

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=85.31  E-value=5.7  Score=36.31  Aligned_cols=125  Identities=14%  Similarity=0.104  Sum_probs=69.1

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHH-HHHHHHHHHHcCCCCcEEEEEcCcccccc---------cC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLA-AAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DV  263 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~a-l~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~  263 (371)
                      .++++|=.|++ |.++..+++.+ ..+.+|+.++.+... .+.+.+-+...+  .++.++.+|+.+.-.         ..
T Consensus        46 ~gk~vlVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  122 (291)
T 3ijr_A           46 KGKNVLITGGD-SGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEG--VKCVLLPGDLSDEQHCKDIVQETVRQ  122 (291)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTT--CCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            46678887765 44555555543 146799999988753 333443344333  458999999865311         11


Q ss_pred             CCceeEEEEcCCCCC-CCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          264 EGKLSGVVSNPPYIP-SDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       264 ~~~fDlIvsNPPYi~-~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      .+++|++|.|--... ...+..++.+...  -....     -+.....+++.+..+++++|.+++..
T Consensus       123 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~--~~~~v-----N~~g~~~l~~~~~~~~~~~g~iv~is  182 (291)
T 3ijr_A          123 LGSLNILVNNVAQQYPQQGLEYITAEQLE--KTFRI-----NIFSYFHVTKAALSHLKQGDVIINTA  182 (291)
T ss_dssp             HSSCCEEEECCCCCCCCSSGGGCCHHHHH--HHHHH-----HTHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred             cCCCCEEEECCCCcCCCCCcccCCHHHHH--HHHHH-----HhHHHHHHHHHHHHHHhhCCEEEEEe
Confidence            257999999964432 1122211111100  00000     01122356677778888899887754

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=85.21  E-value=5.4  Score=35.98  Aligned_cols=80  Identities=19%  Similarity=0.114  Sum_probs=53.8

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE  264 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~  264 (371)
                      .++++|=.|+ +|.++..+++.+ ..+.+|+.++.+++.++.+.+.+...+  .++.++.+|+.+.-.         ...
T Consensus        20 ~~k~vlVTGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   96 (273)
T 1ae1_A           20 KGTTALVTGG-SKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG--LNVEGSVCDLLSRTERDKLMQTVAHVF   96 (273)
T ss_dssp             TTCEEEEESC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECC-cchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence            4567787775 555666665543 136799999999988776666555544  348899999865311         011


Q ss_pred             -CceeEEEEcCCCC
Q 017476          265 -GKLSGVVSNPPYI  277 (371)
Q Consensus       265 -~~fDlIvsNPPYi  277 (371)
                       +++|++|.|.-+.
T Consensus        97 ~g~id~lv~nAg~~  110 (273)
T 1ae1_A           97 DGKLNILVNNAGVV  110 (273)
T ss_dssp             TSCCCEEEECCCCC
T ss_pred             CCCCcEEEECCCCC
Confidence             6899999997554

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=84.82  E-value=4.6  Score=36.56  Aligned_cols=82  Identities=22%  Similarity=0.152  Sum_probs=53.6

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeC-------------CHHHHHHHHHHHHHcCCCCcEEEEEcCcccc
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDL-------------NPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK  259 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDi-------------s~~al~~A~~n~~~~gl~~~v~~~~gD~~~~  259 (371)
                      ..++++|=.|+++| ++..+++.+ ..+.+|+.+|.             +++.++.+.+.+...+  .++.+++.|+.+.
T Consensus        13 l~gk~~lVTGas~g-IG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~   89 (280)
T 3pgx_A           13 LQGRVAFITGAARG-QGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQG--RKALTRVLDVRDD   89 (280)
T ss_dssp             TTTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTT--CCEEEEECCTTCH
T ss_pred             cCCCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcC--CeEEEEEcCCCCH
Confidence            34667787776554 555555443 14679999998             6777776666665544  3589999998653


Q ss_pred             cc---------cCCCceeEEEEcCCCCC
Q 017476          260 LK---------DVEGKLSGVVSNPPYIP  278 (371)
Q Consensus       260 l~---------~~~~~fDlIvsNPPYi~  278 (371)
                      -.         ...++.|++|.|.-...
T Consensus        90 ~~v~~~~~~~~~~~g~id~lvnnAg~~~  117 (280)
T 3pgx_A           90 AALRELVADGMEQFGRLDVVVANAGVLS  117 (280)
T ss_dssp             HHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence            11         01257999999976544

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=84.75  E-value=4.1  Score=36.89  Aligned_cols=81  Identities=17%  Similarity=0.022  Sum_probs=54.8

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE  264 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~  264 (371)
                      .++++|=.| |+|.++..+++.+ ..+.+|+.++.+++.++...+.+...+.  ++.++..|+.+.-.         ...
T Consensus        27 ~~k~~lVTG-as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~  103 (270)
T 3ftp_A           27 DKQVAIVTG-ASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGL--EGRGAVLNVNDATAVDALVESTLKEF  103 (270)
T ss_dssp             TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence            355666656 5555666665543 2467999999999988877777766653  47888999865311         012


Q ss_pred             CceeEEEEcCCCCC
Q 017476          265 GKLSGVVSNPPYIP  278 (371)
Q Consensus       265 ~~fDlIvsNPPYi~  278 (371)
                      ++.|++|.|.-+..
T Consensus       104 g~iD~lvnnAg~~~  117 (270)
T 3ftp_A          104 GALNVLVNNAGITQ  117 (270)
T ss_dssp             SCCCEEEECCCCCC
T ss_pred             CCCCEEEECCCCCC
Confidence            57999999976543

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=84.64  E-value=4.5  Score=36.41  Aligned_cols=81  Identities=14%  Similarity=0.057  Sum_probs=54.2

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHH-cCCCCcEEEEEcCcccccc---------cC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQR-YGLQDIIEIRQGSWFGKLK---------DV  263 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~-~gl~~~v~~~~gD~~~~l~---------~~  263 (371)
                      .++++|=.|++ |.++..+++.+ ..+.+|+.++.+++.++.+.+.+.. .+  .++.+++.|+.+.-.         ..
T Consensus        19 ~~k~vlVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   95 (266)
T 4egf_A           19 DGKRALITGAT-KGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFG--TDVHTVAIDLAEPDAPAELARRAAEA   95 (266)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            35567766654 55566665543 1467999999999888777666654 33  359999999876421         01


Q ss_pred             CCceeEEEEcCCCCC
Q 017476          264 EGKLSGVVSNPPYIP  278 (371)
Q Consensus       264 ~~~fDlIvsNPPYi~  278 (371)
                      .++.|++|.|.-+..
T Consensus        96 ~g~id~lv~nAg~~~  110 (266)
T 4egf_A           96 FGGLDVLVNNAGISH  110 (266)
T ss_dssp             HTSCSEEEEECCCCC
T ss_pred             cCCCCEEEECCCcCC
Confidence            257999999976543

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=84.48  E-value=6.6  Score=35.97  Aligned_cols=125  Identities=14%  Similarity=0.055  Sum_probs=70.4

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCC--HHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------c
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLN--PLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------D  262 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis--~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~  262 (371)
                      .++++|=.|++ |.++..+++.+ ..+.+|+.++.+  ....+.+.+.+...+  .++.++.+|+.+.-.         .
T Consensus        48 ~~k~vlVTGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~  124 (294)
T 3r3s_A           48 KDRKALVTGGD-SGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECG--RKAVLLPGDLSDESFARSLVHKARE  124 (294)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTT--CCEEECCCCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence            45678877754 55555665543 146789999987  344555555555554  358999999865311         1


Q ss_pred             CCCceeEEEEcCCCCC-CCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          263 VEGKLSGVVSNPPYIP-SDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       263 ~~~~fDlIvsNPPYi~-~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      ..++.|++|.|.-... ...+..++.+...  -....     -+.....+++.+...++++|.+++..
T Consensus       125 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~--~~~~v-----N~~g~~~l~~~~~~~~~~~g~Iv~is  185 (294)
T 3r3s_A          125 ALGGLDILALVAGKQTAIPEIKDLTSEQFQ--QTFAV-----NVFALFWITQEAIPLLPKGASIITTS  185 (294)
T ss_dssp             HHTCCCEEEECCCCCCCCSSGGGCCHHHHH--HHHHH-----HTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred             HcCCCCEEEECCCCcCCCCCcccCCHHHHH--HHHHH-----HhHHHHHHHHHHHHHhhcCCEEEEEC
Confidence            1257999999965432 2222222221100  00000     01122356677778888899888754

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=84.48  E-value=4.8  Score=32.46  Aligned_cols=67  Identities=9%  Similarity=0.007  Sum_probs=43.8

Q ss_pred             CCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccc--cccC-CCceeEEE
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK--LKDV-EGKLSGVV  271 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~--l~~~-~~~fDlIv  271 (371)
                      ..+|+=+|+|  .++..+++.+. .+..|+++|.+++.++.+++    .|    +.++.+|..+.  +... -..+|+||
T Consensus         7 ~~~viIiG~G--~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~----~g----~~~i~gd~~~~~~l~~a~i~~ad~vi   76 (140)
T 3fwz_A            7 CNHALLVGYG--RVGSLLGEKLLASDIPLVVIETSRTRVDELRE----RG----VRAVLGNAANEEIMQLAHLECAKWLI   76 (140)
T ss_dssp             CSCEEEECCS--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----TT----CEEEESCTTSHHHHHHTTGGGCSEEE
T ss_pred             CCCEEEECcC--HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----cC----CCEEECCCCCHHHHHhcCcccCCEEE
Confidence            3478888875  45555554431 35689999999998876653    23    67889987653  1111 24688888


Q ss_pred             E
Q 017476          272 S  272 (371)
Q Consensus       272 s  272 (371)
                      .
T Consensus        77 ~   77 (140)
T 3fwz_A           77 L   77 (140)
T ss_dssp             E
T ss_pred             E
Confidence            6

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=84.45  E-value=5.8  Score=35.20  Aligned_cols=80  Identities=13%  Similarity=0.078  Sum_probs=53.8

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE  264 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~  264 (371)
                      .++++|=.|++ |.++..+++.+ ..+.+|+.++.+++.++.+.+.+...+  .++.++.+|+.+.-.         ...
T Consensus         6 ~~k~~lVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~   82 (247)
T 2jah_A            6 QGKVALITGAS-SGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAG--AKVHVLELDVADRQGVDAAVASTVEAL   82 (247)
T ss_dssp             TTCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            35577777754 55666665543 136799999999988877666665544  358899999865311         012


Q ss_pred             CceeEEEEcCCCC
Q 017476          265 GKLSGVVSNPPYI  277 (371)
Q Consensus       265 ~~fDlIvsNPPYi  277 (371)
                      +++|++|.|--+.
T Consensus        83 g~id~lv~nAg~~   95 (247)
T 2jah_A           83 GGLDILVNNAGIM   95 (247)
T ss_dssp             SCCSEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            5799999996554

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=84.29  E-value=6.1  Score=35.29  Aligned_cols=79  Identities=16%  Similarity=0.080  Sum_probs=51.8

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE  264 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~  264 (371)
                      .++++|=.|+ +|.++..+++.+ ..+.+|+.+|.+.+.++...+.+   +  .++.++++|+.+.-.         ...
T Consensus         7 ~~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~v~~~~~~~~~~~   80 (259)
T 4e6p_A            7 EGKSALITGS-ARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI---G--PAAYAVQMDVTRQDSIDAAIAATVEHA   80 (259)
T ss_dssp             TTCEEEEETC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C--TTEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--CCceEEEeeCCCHHHHHHHHHHHHHHc
Confidence            4567887775 455555555543 14679999999988766554433   2  358899999865311         113


Q ss_pred             CceeEEEEcCCCCCC
Q 017476          265 GKLSGVVSNPPYIPS  279 (371)
Q Consensus       265 ~~fDlIvsNPPYi~~  279 (371)
                      +++|++|.|.-+...
T Consensus        81 g~id~lv~~Ag~~~~   95 (259)
T 4e6p_A           81 GGLDILVNNAALFDL   95 (259)
T ss_dssp             SSCCEEEECCCCCCC
T ss_pred             CCCCEEEECCCcCCC
Confidence            589999999765443

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=84.24  E-value=8.3  Score=35.30  Aligned_cols=80  Identities=21%  Similarity=0.120  Sum_probs=53.1

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCC------------HHHHHHHHHHHHHcCCCCcEEEEEcCcccccc
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLN------------PLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK  261 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis------------~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~  261 (371)
                      .++++|=.|+++| ++..+++.+ ..+.+|+.+|.+            ++.++.+.+.+...+  .++.++..|+.+.-.
T Consensus        27 ~gk~~lVTGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~  103 (299)
T 3t7c_A           27 EGKVAFITGAARG-QGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG--RRIIASQVDVRDFDA  103 (299)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHH
T ss_pred             CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcC--CceEEEECCCCCHHH
Confidence            4667888776655 455554433 146799999987            666666666666555  358999999865311


Q ss_pred             ---------cCCCceeEEEEcCCCC
Q 017476          262 ---------DVEGKLSGVVSNPPYI  277 (371)
Q Consensus       262 ---------~~~~~fDlIvsNPPYi  277 (371)
                               ...++.|++|.|.-+.
T Consensus       104 v~~~~~~~~~~~g~iD~lv~nAg~~  128 (299)
T 3t7c_A          104 MQAAVDDGVTQLGRLDIVLANAALA  128 (299)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCCC
Confidence                     0125799999996544

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=84.19  E-value=1.1  Score=42.14  Aligned_cols=46  Identities=28%  Similarity=0.386  Sum_probs=34.9

Q ss_pred             CCCCCCeEEEECCcc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476          192 DGLRDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       192 ~~~~~~~VLDlG~Gs-G~~al~la~~~~~~~~V~gvDis~~al~~A~~  238 (371)
                      ...++.+||=.|+|. |.+++.+|+.. ....++++|.+++-++.|++
T Consensus       157 ~~~~g~~VlV~GaG~vG~~aiq~ak~~-G~~~vi~~~~~~~k~~~a~~  203 (346)
T 4a2c_A          157 QGCENKNVIIIGAGTIGLLAIQCAVAL-GAKSVTAIDISSEKLALAKS  203 (346)
T ss_dssp             TCCTTSEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCCcchHHHHHHHHc-CCcEEEEEechHHHHHHHHH
Confidence            345678999999874 56777788875 44578999999998887764

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=84.04  E-value=1.2  Score=41.50  Aligned_cols=39  Identities=13%  Similarity=0.062  Sum_probs=31.9

Q ss_pred             eEEEECC--cccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476          198 FWVDLGT--GSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       198 ~VLDlG~--GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~  238 (371)
                      +||-.|+  |.|..++.+|+..  +++|++++.+++.++.+++
T Consensus       152 ~VlV~Ga~G~vG~~~~q~a~~~--Ga~vi~~~~~~~~~~~~~~  192 (328)
T 1xa0_A          152 PVLVTGATGGVGSLAVSMLAKR--GYTVEASTGKAAEHDYLRV  192 (328)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCTTCHHHHHH
T ss_pred             eEEEecCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence            7999997  5778888899875  5789999999887777753

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=83.96  E-value=4.7  Score=36.17  Aligned_cols=83  Identities=16%  Similarity=0.145  Sum_probs=55.5

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE  264 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~  264 (371)
                      .++++|=.|. +|.++..+++.+ ..+.+|+.+|.+++.++.+.+.+...+- .++.+++.|+.+.-.         ...
T Consensus         9 ~~k~vlVTGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~   86 (262)
T 3pk0_A            9 QGRSVVVTGG-TKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGS-GKVIGVQTDVSDRAQCDALAGRAVEEF   86 (262)
T ss_dssp             TTCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTSS-SCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCC-CcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            4556776664 555666666543 1467999999999988877776655442 358999999865311         012


Q ss_pred             CceeEEEEcCCCCCC
Q 017476          265 GKLSGVVSNPPYIPS  279 (371)
Q Consensus       265 ~~fDlIvsNPPYi~~  279 (371)
                      ++.|++|.|.-+...
T Consensus        87 g~id~lvnnAg~~~~  101 (262)
T 3pk0_A           87 GGIDVVCANAGVFPD  101 (262)
T ss_dssp             SCCSEEEECCCCCCC
T ss_pred             CCCCEEEECCCCCCC
Confidence            579999999755433

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=83.96  E-value=5.1  Score=36.45  Aligned_cols=78  Identities=19%  Similarity=0.196  Sum_probs=50.5

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE  264 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~  264 (371)
                      .++++|=.|++ |.++..+++.+ ..+.+|+.+|.+++.++.+.+.+   +  .++.++.+|+.+.-.         ...
T Consensus        28 ~gk~vlVTGas-~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~  101 (277)
T 3gvc_A           28 AGKVAIVTGAG-AGIGLAVARRLADEGCHVLCADIDGDAADAAATKI---G--CGAAACRVDVSDEQQIIAMVDACVAAF  101 (277)
T ss_dssp             TTCEEEETTTT-STHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH---C--SSCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc---C--CcceEEEecCCCHHHHHHHHHHHHHHc
Confidence            35577766655 44555555443 24679999999998776655443   3  358899999865311         112


Q ss_pred             CceeEEEEcCCCCC
Q 017476          265 GKLSGVVSNPPYIP  278 (371)
Q Consensus       265 ~~fDlIvsNPPYi~  278 (371)
                      ++.|++|.|.-+..
T Consensus       102 g~iD~lvnnAg~~~  115 (277)
T 3gvc_A          102 GGVDKLVANAGVVH  115 (277)
T ss_dssp             SSCCEEEECCCCCC
T ss_pred             CCCCEEEECCCCCC
Confidence            57999999976543

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=83.90  E-value=6.1  Score=35.64  Aligned_cols=82  Identities=17%  Similarity=0.069  Sum_probs=53.4

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeC-------------CHHHHHHHHHHHHHcCCCCcEEEEEcCccccc
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDL-------------NPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL  260 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDi-------------s~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l  260 (371)
                      .++++|=.|+++| ++..+++.+ ..+.+|+.+|.             +.+.++.+.+.+...+  .++.++..|..+.-
T Consensus        10 ~~k~~lVTGas~G-IG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~   86 (277)
T 3tsc_A           10 EGRVAFITGAARG-QGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAAN--RRIVAAVVDTRDFD   86 (277)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHH
T ss_pred             CCCEEEEECCccH-HHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcC--CeEEEEECCCCCHH
Confidence            4567887776554 445554433 14679999998             6777766666665554  35899999986531


Q ss_pred             c---------cCCCceeEEEEcCCCCCC
Q 017476          261 K---------DVEGKLSGVVSNPPYIPS  279 (371)
Q Consensus       261 ~---------~~~~~fDlIvsNPPYi~~  279 (371)
                      .         ...++.|++|.|.-+...
T Consensus        87 ~v~~~~~~~~~~~g~id~lvnnAg~~~~  114 (277)
T 3tsc_A           87 RLRKVVDDGVAALGRLDIIVANAGVAAP  114 (277)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCC
Confidence            1         012579999999765443

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=83.82  E-value=5.1  Score=35.89  Aligned_cols=79  Identities=16%  Similarity=0.073  Sum_probs=55.4

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE  264 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~  264 (371)
                      .++++|=.|+ +|.++..+++.+ ..+.+|+.++.+++.++...+.+...+  .++.++..|+.+.-.         ...
T Consensus        28 ~~k~vlITGa-s~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~  104 (262)
T 3rkr_A           28 SGQVAVVTGA-SRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAG--GEAESHACDLSHSDAIAAFATGVLAAH  104 (262)
T ss_dssp             TTCEEEESST-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhC--CceeEEEecCCCHHHHHHHHHHHHHhc
Confidence            4557776665 566666666654 246799999999998888777776665  358999999865311         112


Q ss_pred             CceeEEEEcCCC
Q 017476          265 GKLSGVVSNPPY  276 (371)
Q Consensus       265 ~~fDlIvsNPPY  276 (371)
                      ++.|++|.|.-+
T Consensus       105 g~id~lv~~Ag~  116 (262)
T 3rkr_A          105 GRCDVLVNNAGV  116 (262)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            579999999755

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=83.75  E-value=1.2  Score=42.55  Aligned_cols=71  Identities=15%  Similarity=0.293  Sum_probs=43.7

Q ss_pred             CCCeEEEECCcc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          195 RDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       195 ~~~~VLDlG~Gs-G~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      ++.+||=+|+|. |..++.+|+..  +++|+++|.+++.++.+++   ..|..   .++..+-.+.+....+.+|+|+-+
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~---~lGa~---~v~~~~~~~~~~~~~~~~D~vid~  258 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAF--GSKVTVISTSPSKKEEALK---NFGAD---SFLVSRDQEQMQAAAGTLDGIIDT  258 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCGGGHHHHHH---TSCCS---EEEETTCHHHHHHTTTCEEEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH---hcCCc---eEEeccCHHHHHHhhCCCCEEEEC
Confidence            567899998763 66777777764  5799999999987776653   24432   122111011122222469999974

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=83.51  E-value=8.4  Score=34.91  Aligned_cols=89  Identities=13%  Similarity=0.078  Sum_probs=52.1

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc----CCCcee
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD----VEGKLS  268 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~----~~~~fD  268 (371)
                      .+++++|=-|.++| ++.++|+.+ ..+++|+.+|.+..  +.+.+.++..+  .++..++.|..+...-    ..+++|
T Consensus         7 L~GKvalVTGas~G-IG~aiA~~la~~Ga~Vvi~~r~~~--~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~g~iD   81 (247)
T 4hp8_A            7 LEGRKALVTGANTG-LGQAIAVGLAAAGAEVVCAARRAP--DETLDIIAKDG--GNASALLIDFADPLAAKDSFTDAGFD   81 (247)
T ss_dssp             CTTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESSCC--HHHHHHHHHTT--CCEEEEECCTTSTTTTTTSSTTTCCC
T ss_pred             CCCCEEEEeCcCCH-HHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHhCCCC
Confidence            34666676666555 444444433 14689999998753  22333344455  3488999998664221    146899


Q ss_pred             EEEEcCCCCCCCCcccchh
Q 017476          269 GVVSNPPYIPSDDISGLQV  287 (371)
Q Consensus       269 lIvsNPPYi~~~~~~~l~~  287 (371)
                      ++|.|-=......+..++.
T Consensus        82 iLVNNAGi~~~~~~~~~~~  100 (247)
T 4hp8_A           82 ILVNNAGIIRRADSVEFSE  100 (247)
T ss_dssp             EEEECCCCCCCCCGGGCCH
T ss_pred             EEEECCCCCCCCCcccccH
Confidence            9999965444433333333

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=83.44  E-value=5.5  Score=36.11  Aligned_cols=81  Identities=21%  Similarity=0.068  Sum_probs=52.4

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCC----------------HHHHHHHHHHHHHcCCCCcEEEEEcCcc
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLN----------------PLAAAVAAFNAQRYGLQDIIEIRQGSWF  257 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis----------------~~al~~A~~n~~~~gl~~~v~~~~gD~~  257 (371)
                      .++++|=.|+++| ++..+++.+ ..+.+|+.+|.+                .+.++...+.+...+  .++.++..|..
T Consensus        10 ~~k~~lVTGas~g-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~   86 (286)
T 3uve_A           10 EGKVAFVTGAARG-QGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHN--RRIVTAEVDVR   86 (286)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTT--CCEEEEECCTT
T ss_pred             CCCEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcC--CceEEEEcCCC
Confidence            4667887776655 455554443 146799999987                666665555554443  45999999986


Q ss_pred             cccc---------cCCCceeEEEEcCCCCC
Q 017476          258 GKLK---------DVEGKLSGVVSNPPYIP  278 (371)
Q Consensus       258 ~~l~---------~~~~~fDlIvsNPPYi~  278 (371)
                      +.-.         ...++.|++|.|.-+..
T Consensus        87 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~  116 (286)
T 3uve_A           87 DYDALKAAVDSGVEQLGRLDIIVANAGIGN  116 (286)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEECCcccC
Confidence            5311         11257999999976543

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=83.38  E-value=1.6  Score=41.40  Aligned_cols=71  Identities=17%  Similarity=0.192  Sum_probs=43.9

Q ss_pred             CCCeEEEECCc-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          195 RDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       195 ~~~~VLDlG~G-sG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      ++.+||-+|+| .|.+++.+|+..  +++|+++|.+++.++.+++   ..|... + +...+. +.+....+.+|+|+-+
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~--Ga~Vi~~~~~~~~~~~~~~---~lGa~~-v-i~~~~~-~~~~~~~~g~D~vid~  251 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAM--GHHVTVISSSNKKREEALQ---DLGADD-Y-VIGSDQ-AKMSELADSLDYVIDT  251 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSTTHHHHHHT---TSCCSC-E-EETTCH-HHHHHSTTTEEEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH---HcCCce-e-eccccH-HHHHHhcCCCCEEEEC
Confidence            56789999876 466777788875  5699999999887776652   345432 1 111111 1111122469999864

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=83.37  E-value=1.9  Score=40.29  Aligned_cols=39  Identities=23%  Similarity=0.153  Sum_probs=31.7

Q ss_pred             eEEEECC--cccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476          198 FWVDLGT--GSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       198 ~VLDlG~--GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~  238 (371)
                      +||-.|+  |.|..++.+|+..  +++|++++.+++.++.+++
T Consensus       153 ~VlV~Ga~G~vG~~~~q~a~~~--Ga~vi~~~~~~~~~~~~~~  193 (330)
T 1tt7_A          153 SVLVTGATGGVGGIAVSMLNKR--GYDVVASTGNREAADYLKQ  193 (330)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHH--TCCEEEEESSSSTHHHHHH
T ss_pred             eEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence            7999996  5778888888875  4689999999887777754

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=83.23  E-value=3.5  Score=37.54  Aligned_cols=81  Identities=12%  Similarity=-0.023  Sum_probs=54.8

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE  264 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~  264 (371)
                      .++++|=.|++ |.++..+++.+ ..+.+|+.++.+++.++...+.+...+  .++.++++|+.+.-.         ...
T Consensus        31 ~gk~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~~  107 (276)
T 3r1i_A           31 SGKRALITGAS-TGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVG--GKALPIRCDVTQPDQVRGMLDQMTGEL  107 (276)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45678877765 45555555543 146799999999988877777666655  358899999865311         012


Q ss_pred             CceeEEEEcCCCCC
Q 017476          265 GKLSGVVSNPPYIP  278 (371)
Q Consensus       265 ~~fDlIvsNPPYi~  278 (371)
                      +++|++|.|.-...
T Consensus       108 g~iD~lvnnAg~~~  121 (276)
T 3r1i_A          108 GGIDIAVCNAGIVS  121 (276)
T ss_dssp             SCCSEEEECCCCCC
T ss_pred             CCCCEEEECCCCCC
Confidence            57999999975543

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=83.10  E-value=7.7  Score=35.25  Aligned_cols=81  Identities=17%  Similarity=0.090  Sum_probs=52.2

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHH-------HHHHHHHHHHHcCCCCcEEEEEcCcccccc-----
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPL-------AAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-----  261 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~-------al~~A~~n~~~~gl~~~v~~~~gD~~~~l~-----  261 (371)
                      .++++|=.|+++ .++..+++.+ ..+.+|+.++.+.+       .++.+.+.+...+  .++.+++.|+.+.-.     
T Consensus         8 ~~k~vlVTGas~-GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~   84 (285)
T 3sc4_A            8 RGKTMFISGGSR-GIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAG--GQALPIVGDIRDGDAVAAAV   84 (285)
T ss_dssp             TTCEEEEESCSS-HHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHT--SEEEEEECCTTSHHHHHHHH
T ss_pred             CCCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHH
Confidence            456788777654 4566665554 24679999999875       3444444455444  359999999865311     


Q ss_pred             ----cCCCceeEEEEcCCCCC
Q 017476          262 ----DVEGKLSGVVSNPPYIP  278 (371)
Q Consensus       262 ----~~~~~fDlIvsNPPYi~  278 (371)
                          ...++.|++|.|.-+..
T Consensus        85 ~~~~~~~g~id~lvnnAg~~~  105 (285)
T 3sc4_A           85 AKTVEQFGGIDICVNNASAIN  105 (285)
T ss_dssp             HHHHHHHSCCSEEEECCCCCC
T ss_pred             HHHHHHcCCCCEEEECCCCCC
Confidence                11257999999976543

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=83.10  E-value=7.8  Score=35.89  Aligned_cols=81  Identities=20%  Similarity=0.076  Sum_probs=52.3

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCC------------HHHHHHHHHHHHHcCCCCcEEEEEcCcccccc
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLN------------PLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK  261 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis------------~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~  261 (371)
                      .++++|=.|++ |.++..+++.+ ..+.+|+.+|.+            .+.++.+.+.+...+  .++.++..|+.+.-.
T Consensus        45 ~gk~~lVTGas-~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~  121 (317)
T 3oec_A           45 QGKVAFITGAA-RGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQG--RRIIARQADVRDLAS  121 (317)
T ss_dssp             TTCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHH
Confidence            45567766655 45555555543 146799999986            666666665555554  358999999865311


Q ss_pred             ---------cCCCceeEEEEcCCCCC
Q 017476          262 ---------DVEGKLSGVVSNPPYIP  278 (371)
Q Consensus       262 ---------~~~~~fDlIvsNPPYi~  278 (371)
                               ...+++|++|.|--+..
T Consensus       122 v~~~~~~~~~~~g~iD~lVnnAg~~~  147 (317)
T 3oec_A          122 LQAVVDEALAEFGHIDILVSNVGISN  147 (317)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCC
Confidence                     01257999999965543

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=83.05  E-value=4.2  Score=36.88  Aligned_cols=84  Identities=17%  Similarity=0.068  Sum_probs=51.9

Q ss_pred             CeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCCCc
Q 017476          197 GFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEGK  266 (371)
Q Consensus       197 ~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~~~  266 (371)
                      ++||=-|.++| ++.++++.+ ..+++|+.+|.+++.++...+    .+  .++.++++|..+...         ...++
T Consensus         3 K~vlVTGas~G-IG~aia~~la~~Ga~V~~~~~~~~~~~~~~~----~~--~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~   75 (247)
T 3ged_A            3 RGVIVTGGGHG-IGKQICLDFLEAGDKVCFIDIDEKRSADFAK----ER--PNLFYFHGDVADPLTLKKFVEYAMEKLQR   75 (247)
T ss_dssp             CEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHT----TC--TTEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CEEEEecCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----hc--CCEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            46776676666 444444332 146899999999887654332    12  348899999865321         11368


Q ss_pred             eeEEEEcCCCCCCCCcccchh
Q 017476          267 LSGVVSNPPYIPSDDISGLQV  287 (371)
Q Consensus       267 fDlIvsNPPYi~~~~~~~l~~  287 (371)
                      .|++|.|--......+..++.
T Consensus        76 iDiLVNNAG~~~~~~~~~~~~   96 (247)
T 3ged_A           76 IDVLVNNACRGSKGILSSLLY   96 (247)
T ss_dssp             CCEEEECCCCCCCCGGGTCCH
T ss_pred             CCEEEECCCCCCCCCcccCCH
Confidence            999999975554444444443

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=83.03  E-value=4.6  Score=36.68  Aligned_cols=80  Identities=19%  Similarity=0.110  Sum_probs=54.4

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE  264 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~  264 (371)
                      .++++|=.|+ +|.++..+++.+ ..+.+|+.+|.+++.++.+.+.+...+  .++.++.+|..+.-.         . .
T Consensus        32 ~gk~~lVTGa-s~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~-~  107 (275)
T 4imr_A           32 RGRTALVTGS-SRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASG--GTAQELAGDLSEAGAGTDLIERAEA-I  107 (275)
T ss_dssp             TTCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTT--CCEEEEECCTTSTTHHHHHHHHHHH-H
T ss_pred             CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEecCCCHHHHHHHHHHHHH-h
Confidence            3556776664 455666665543 246799999999888777776666654  358999999865421         1 1


Q ss_pred             CceeEEEEcCCCCC
Q 017476          265 GKLSGVVSNPPYIP  278 (371)
Q Consensus       265 ~~fDlIvsNPPYi~  278 (371)
                      +++|++|.|.-...
T Consensus       108 g~iD~lvnnAg~~~  121 (275)
T 4imr_A          108 APVDILVINASAQI  121 (275)
T ss_dssp             SCCCEEEECCCCCC
T ss_pred             CCCCEEEECCCCCC
Confidence            57999999975543

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=83.01  E-value=1.1  Score=44.09  Aligned_cols=45  Identities=20%  Similarity=0.109  Sum_probs=35.8

Q ss_pred             CCCCCCeEEEECC--cccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476          192 DGLRDGFWVDLGT--GSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       192 ~~~~~~~VLDlG~--GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~  238 (371)
                      ...++.+||=.|+  |.|.+++.+|+..  +++|++++.+++-++.+++
T Consensus       225 ~~~~g~~VlV~GasG~vG~~avqlak~~--Ga~vi~~~~~~~~~~~~~~  271 (456)
T 3krt_A          225 GMKQGDNVLIWGASGGLGSYATQFALAG--GANPICVVSSPQKAEICRA  271 (456)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHc--CCeEEEEECCHHHHHHHHh
Confidence            3446778999986  4678888889874  6799999999988888754

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=82.99  E-value=5.1  Score=35.68  Aligned_cols=81  Identities=21%  Similarity=0.089  Sum_probs=53.6

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeC-CHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc--c-------C
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDL-NPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK--D-------V  263 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDi-s~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~--~-------~  263 (371)
                      .+++||=.| |+|.++..+++.+. .+.+|++++. ++..++...+.+...+  .++.++.+|+.+.-.  .       .
T Consensus        20 ~~k~vlItG-asggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   96 (274)
T 1ja9_A           20 AGKVALTTG-AGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLG--AQGVAIQADISKPSEVVALFDKAVSH   96 (274)
T ss_dssp             TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            355677555 56777777776542 3578999998 7777766655555544  358899999875311  0       0


Q ss_pred             CCceeEEEEcCCCCC
Q 017476          264 EGKLSGVVSNPPYIP  278 (371)
Q Consensus       264 ~~~fDlIvsNPPYi~  278 (371)
                      .+.+|++|.|.-+..
T Consensus        97 ~~~~d~vi~~Ag~~~  111 (274)
T 1ja9_A           97 FGGLDFVMSNSGMEV  111 (274)
T ss_dssp             HSCEEEEECCCCCCC
T ss_pred             cCCCCEEEECCCCCC
Confidence            147999999876543

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=82.43  E-value=4.6  Score=35.92  Aligned_cols=80  Identities=20%  Similarity=0.184  Sum_probs=52.3

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE  264 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~  264 (371)
                      .++++|=.|++ |.++..+++.+ ..+.+|+.+|.+++.++.+.+.+   +  .++.++..|..+.-.         ...
T Consensus         5 ~gk~vlVTGas-~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   78 (247)
T 3rwb_A            5 AGKTALVTGAA-QGIGKAIAARLAADGATVIVSDINAEGAKAAAASI---G--KKARAIAADISDPGSVKALFAEIQALT   78 (247)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH---C--TTEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--CceEEEEcCCCCHHHHHHHHHHHHHHC
Confidence            45678877755 44555555543 14679999999998776554433   3  358999999865311         112


Q ss_pred             CceeEEEEcCCCCCCC
Q 017476          265 GKLSGVVSNPPYIPSD  280 (371)
Q Consensus       265 ~~fDlIvsNPPYi~~~  280 (371)
                      +++|++|.|.-+.+..
T Consensus        79 g~id~lv~nAg~~~~~   94 (247)
T 3rwb_A           79 GGIDILVNNASIVPFV   94 (247)
T ss_dssp             SCCSEEEECCCCCCCC
T ss_pred             CCCCEEEECCCCCCCC
Confidence            5799999997665443

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=82.23  E-value=8.8  Score=34.08  Aligned_cols=78  Identities=17%  Similarity=0.066  Sum_probs=51.9

Q ss_pred             CeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCCCc
Q 017476          197 GFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEGK  266 (371)
Q Consensus       197 ~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~~~  266 (371)
                      +++|=.|+ +|.++..+++.+. .+.+|+.++.+++.++...+.+...+  .++.++.+|+.+.-.         ...++
T Consensus         3 k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   79 (256)
T 1geg_A            3 KVALVTGA-GQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKTLGG   79 (256)
T ss_dssp             CEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHTTC
T ss_pred             CEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            45666664 5556666665431 35799999999987776666655544  358899999865311         01257


Q ss_pred             eeEEEEcCCCC
Q 017476          267 LSGVVSNPPYI  277 (371)
Q Consensus       267 fDlIvsNPPYi  277 (371)
                      +|++|.|.-+.
T Consensus        80 id~lv~nAg~~   90 (256)
T 1geg_A           80 FDVIVNNAGVA   90 (256)
T ss_dssp             CCEEEECCCCC
T ss_pred             CCEEEECCCCC
Confidence            99999997543

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=82.13  E-value=2.4  Score=38.27  Aligned_cols=77  Identities=19%  Similarity=0.177  Sum_probs=49.4

Q ss_pred             CCCeEEEECC-cccHHHHHHHHHhC-CCcEEEEEeCCHHH-HHHHHHHHHHcCCCCcEEEEEcCcccccc---------c
Q 017476          195 RDGFWVDLGT-GSGAIAIGIARVLG-SKGSIIAVDLNPLA-AAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------D  262 (371)
Q Consensus       195 ~~~~VLDlG~-GsG~~al~la~~~~-~~~~V~gvDis~~a-l~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~  262 (371)
                      .++++|=.|+ |+|.++..+++.+. .+.+|+.+|.+++. ++...+     .+..++.++.+|+.+.-.         .
T Consensus         6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~-----~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   80 (269)
T 2h7i_A            6 DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITD-----RLPAKAPLLELDVQNEEHLASLAGRVTE   80 (269)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHT-----TSSSCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHH-----hcCCCceEEEccCCCHHHHHHHHHHHHH
Confidence            4568888887 47777777776542 36789999998754 222221     123457889999865311         0


Q ss_pred             CCC---ceeEEEEcCCC
Q 017476          263 VEG---KLSGVVSNPPY  276 (371)
Q Consensus       263 ~~~---~fDlIvsNPPY  276 (371)
                      ..+   ++|++|.|-=.
T Consensus        81 ~~g~~~~iD~lv~nAg~   97 (269)
T 2h7i_A           81 AIGAGNKLDGVVHSIGF   97 (269)
T ss_dssp             HHCTTCCEEEEEECCCC
T ss_pred             HhCCCCCceEEEECCcc
Confidence            013   89999998644

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=82.06  E-value=5.5  Score=35.56  Aligned_cols=80  Identities=11%  Similarity=0.098  Sum_probs=53.2

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE  264 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~  264 (371)
                      .++++|=.|+ +|.++..+++.+ ..+.+|+.+|.+++.++.+.+.+...+  .++.++..|+.+.-.         ...
T Consensus         5 ~~k~vlVTGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (257)
T 3imf_A            5 KEKVVIITGG-SSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFP--GQILTVQMDVRNTDDIQKMIEQIDEKF   81 (257)
T ss_dssp             TTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCST--TCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            3556776664 455666666543 246799999999988877766554333  468999999865311         112


Q ss_pred             CceeEEEEcCCCC
Q 017476          265 GKLSGVVSNPPYI  277 (371)
Q Consensus       265 ~~fDlIvsNPPYi  277 (371)
                      ++.|++|.|.-..
T Consensus        82 g~id~lv~nAg~~   94 (257)
T 3imf_A           82 GRIDILINNAAGN   94 (257)
T ss_dssp             SCCCEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            5799999996543

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=81.90  E-value=8.8  Score=34.16  Aligned_cols=80  Identities=19%  Similarity=0.109  Sum_probs=53.6

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc--c-------CC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK--D-------VE  264 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~--~-------~~  264 (371)
                      .++++|=.|+ +|.++..+++.+ ..+.+|++++.+++.++.+.+.+...+  .++.++.+|+.+.-.  .       ..
T Consensus         8 ~~k~vlVTGa-s~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (260)
T 2ae2_A            8 EGCTALVTGG-SRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANHF   84 (260)
T ss_dssp             TTCEEEEESC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            4567887765 556666666543 136799999999988776666555444  358899999865311  0       01


Q ss_pred             -CceeEEEEcCCCC
Q 017476          265 -GKLSGVVSNPPYI  277 (371)
Q Consensus       265 -~~fDlIvsNPPYi  277 (371)
                       +++|++|.|--..
T Consensus        85 ~g~id~lv~~Ag~~   98 (260)
T 2ae2_A           85 HGKLNILVNNAGIV   98 (260)
T ss_dssp             TTCCCEEEECCCCC
T ss_pred             CCCCCEEEECCCCC
Confidence             6799999996543

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=81.71  E-value=19  Score=31.87  Aligned_cols=80  Identities=9%  Similarity=-0.039  Sum_probs=53.2

Q ss_pred             CCeEEEECCcccHHHHHHHHHhC----CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------c
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLG----SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------D  262 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~----~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~  262 (371)
                      ++++|=.| |+|.++..+++.+.    .+.+|+.+|.+++.++.+.+.+.......++.++..|+.+.-.         .
T Consensus         6 ~k~~lVTG-as~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   84 (259)
T 1oaa_A            6 CAVCVLTG-ASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRE   84 (259)
T ss_dssp             SEEEEESS-CSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CcEEEEeC-CCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHh
Confidence            44566555 56677777777653    3689999999998887766666543222458999999865311         1


Q ss_pred             --CCCcee--EEEEcCCC
Q 017476          263 --VEGKLS--GVVSNPPY  276 (371)
Q Consensus       263 --~~~~fD--lIvsNPPY  276 (371)
                        ..+++|  ++|.|.-+
T Consensus        85 ~~~~g~~d~~~lvnnAg~  102 (259)
T 1oaa_A           85 LPRPEGLQRLLLINNAAT  102 (259)
T ss_dssp             SCCCTTCCEEEEEECCCC
T ss_pred             ccccccCCccEEEECCcc
Confidence              124678  99998654

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=81.65  E-value=8.5  Score=34.18  Aligned_cols=80  Identities=14%  Similarity=-0.014  Sum_probs=52.6

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCc--cccc---------cc
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSW--FGKL---------KD  262 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~--~~~l---------~~  262 (371)
                      .++++|=.|++ |.++..+++.+ ..+.+|+.+|.+++.++.+.+.+...+- .++.++..|.  .+.-         ..
T Consensus        11 ~~k~vlVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~   88 (252)
T 3f1l_A           11 NDRIILVTGAS-DGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETG-RQPQWFILDLLTCTSENCQQLAQRIAV   88 (252)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHS-CCCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcC-CCceEEEEecccCCHHHHHHHHHHHHH
Confidence            45677777755 55555555543 1467999999999888777666654432 2478889988  3321         01


Q ss_pred             CCCceeEEEEcCCC
Q 017476          263 VEGKLSGVVSNPPY  276 (371)
Q Consensus       263 ~~~~fDlIvsNPPY  276 (371)
                      ..++.|++|.|.-.
T Consensus        89 ~~g~id~lv~nAg~  102 (252)
T 3f1l_A           89 NYPRLDGVLHNAGL  102 (252)
T ss_dssp             HCSCCSEEEECCCC
T ss_pred             hCCCCCEEEECCcc
Confidence            13589999999654

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=81.59  E-value=6.6  Score=34.50  Aligned_cols=81  Identities=16%  Similarity=0.157  Sum_probs=53.6

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCc--ccc---------ccc
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSW--FGK---------LKD  262 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~--~~~---------l~~  262 (371)
                      .++++|=.|+ +|.++..+++.+ ..+.+|+.++.+++.++.+.+.+...+.. ++.++..|.  .+.         +..
T Consensus        13 ~~k~vlITGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~d~d~~~~~~~~~~~~~~~~   90 (247)
T 3i1j_A           13 KGRVILVTGA-ARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQP-QPLIIALNLENATAQQYRELAARVEH   90 (247)
T ss_dssp             TTCEEEESST-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTSC-CCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCC-CceEEEeccccCCHHHHHHHHHHHHH
Confidence            4566776665 456666666543 14679999999999988887777766533 477777776  321         001


Q ss_pred             CCCceeEEEEcCCCC
Q 017476          263 VEGKLSGVVSNPPYI  277 (371)
Q Consensus       263 ~~~~fDlIvsNPPYi  277 (371)
                      ..+++|++|.|.-+.
T Consensus        91 ~~g~id~lv~nAg~~  105 (247)
T 3i1j_A           91 EFGRLDGLLHNASII  105 (247)
T ss_dssp             HHSCCSEEEECCCCC
T ss_pred             hCCCCCEEEECCccC
Confidence            125799999997653

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=81.48  E-value=5.3  Score=33.58  Aligned_cols=67  Identities=18%  Similarity=0.176  Sum_probs=42.4

Q ss_pred             CCeEEEECCcccHHHHHHHHHhC-C-CcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccc--cccC--CCceeE
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLG-S-KGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK--LKDV--EGKLSG  269 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~-~-~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~--l~~~--~~~fDl  269 (371)
                      +.+|+=+|+  |.++..+++.+. . +.+|+++|.+++.++.+++    .|    +.++.+|..+.  +...  ...+|+
T Consensus        39 ~~~v~IiG~--G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~----~g----~~~~~gd~~~~~~l~~~~~~~~ad~  108 (183)
T 3c85_A           39 HAQVLILGM--GRIGTGAYDELRARYGKISLGIEIREEAAQQHRS----EG----RNVISGDATDPDFWERILDTGHVKL  108 (183)
T ss_dssp             TCSEEEECC--SHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH----TT----CCEEECCTTCHHHHHTBCSCCCCCE
T ss_pred             CCcEEEECC--CHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH----CC----CCEEEcCCCCHHHHHhccCCCCCCE
Confidence            457888776  566666655442 2 5689999999988766542    33    45677776542  1111  246898


Q ss_pred             EEE
Q 017476          270 VVS  272 (371)
Q Consensus       270 Ivs  272 (371)
                      ||.
T Consensus       109 vi~  111 (183)
T 3c85_A          109 VLL  111 (183)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            887

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=81.39  E-value=12  Score=33.52  Aligned_cols=82  Identities=24%  Similarity=0.184  Sum_probs=53.3

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHH-HHcCCCCcEEEEEcCcccccc---------c
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNA-QRYGLQDIIEIRQGSWFGKLK---------D  262 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~-~~~gl~~~v~~~~gD~~~~l~---------~  262 (371)
                      ..++++|=.|+ +|.++..+++.+ ..+.+|++++.+++.++.+.+.+ ...+  .++.++.+|+.+.-.         .
T Consensus        19 l~~k~~lVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~   95 (267)
T 1vl8_A           19 LRGRVALVTGG-SRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYG--VETMAFRCDVSNYEEVKKLLEAVKE   95 (267)
T ss_dssp             CTTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHH
Confidence            34567777775 556666666543 13679999999988776665554 3334  348889999865311         0


Q ss_pred             CCCceeEEEEcCCCCC
Q 017476          263 VEGKLSGVVSNPPYIP  278 (371)
Q Consensus       263 ~~~~fDlIvsNPPYi~  278 (371)
                      ..+++|++|.|--+..
T Consensus        96 ~~g~iD~lvnnAg~~~  111 (267)
T 1vl8_A           96 KFGKLDTVVNAAGINR  111 (267)
T ss_dssp             HHSCCCEEEECCCCCC
T ss_pred             HcCCCCEEEECCCcCC
Confidence            1247999999976543

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=81.31  E-value=1.7  Score=41.58  Aligned_cols=72  Identities=13%  Similarity=0.199  Sum_probs=44.6

Q ss_pred             CCCCeEEEECC--cccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc-CCCceeEE
Q 017476          194 LRDGFWVDLGT--GSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VEGKLSGV  270 (371)
Q Consensus       194 ~~~~~VLDlG~--GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~-~~~~fDlI  270 (371)
                      .++.+||=.|+  |.|.+++.+|+..  +++|+++. +++-++.++    ..|...-+.....|+.+.+.. ..+.+|+|
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~--Ga~Vi~~~-~~~~~~~~~----~lGa~~vi~~~~~~~~~~v~~~t~g~~d~v  235 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLS--GYIPIATC-SPHNFDLAK----SRGAEEVFDYRAPNLAQTIRTYTKNNLRYA  235 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEE-CGGGHHHHH----HTTCSEEEETTSTTHHHHHHHHTTTCCCEE
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHC--CCEEEEEe-CHHHHHHHH----HcCCcEEEECCCchHHHHHHHHccCCccEE
Confidence            45778999998  3788999999975  57899985 787777665    456432111112232222211 12458988


Q ss_pred             EE
Q 017476          271 VS  272 (371)
Q Consensus       271 vs  272 (371)
                      +-
T Consensus       236 ~d  237 (371)
T 3gqv_A          236 LD  237 (371)
T ss_dssp             EE
T ss_pred             EE
Confidence            85

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=81.19  E-value=8.5  Score=34.80  Aligned_cols=124  Identities=15%  Similarity=0.078  Sum_probs=66.6

Q ss_pred             CCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHH-HHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLA-AAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE  264 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~a-l~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~  264 (371)
                      ++++|=.|+ +|.++..+++.+. .+.+|+.++.+... .+.+.+.+...+  .++.++..|+.+.-.         ...
T Consensus        29 ~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~  105 (283)
T 1g0o_A           29 GKVALVTGA-GRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAVKIF  105 (283)
T ss_dssp             TCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            456666654 5666666666542 36789999988643 444444444444  348899999865311         012


Q ss_pred             CceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          265 GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       265 ~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      +++|++|.|--+.....+..++.+.  ++-..  ..   -+.....+++.+.+.|+.+|.+++..
T Consensus       106 g~iD~lv~~Ag~~~~~~~~~~~~~~--~~~~~--~~---N~~g~~~l~~~~~~~~~~~g~iv~is  163 (283)
T 1g0o_A          106 GKLDIVCSNSGVVSFGHVKDVTPEE--FDRVF--TI---NTRGQFFVAREAYKHLEIGGRLILMG  163 (283)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHH--HHHHH--HH---HTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHH--HHHHH--HH---hhHHHHHHHHHHHHHHhcCCeEEEEe
Confidence            5789999996544322222221111  00000  00   01112245566666777778887754

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=80.93  E-value=6.4  Score=35.05  Aligned_cols=74  Identities=19%  Similarity=0.130  Sum_probs=48.4

Q ss_pred             CeEEEECCcccHHHHHHHHHh---CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476          197 GFWVDLGTGSGAIAIGIARVL---GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE  264 (371)
Q Consensus       197 ~~VLDlG~GsG~~al~la~~~---~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~  264 (371)
                      +++|=.|+ +|.++..+++.+   +.+..|+.++.+++.++...+..   +  .++.++.+|+.+.-.         ...
T Consensus         3 k~~lVTGa-s~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   76 (254)
T 3kzv_A            3 KVILVTGV-SRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKY---G--DRFFYVVGDITEDSVLKQLVNAAVKGH   76 (254)
T ss_dssp             CEEEECST-TSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHH---G--GGEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECC-CchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHh---C--CceEEEECCCCCHHHHHHHHHHHHHhc
Confidence            35666664 455555555543   23578999999998877655443   2  458999999865311         112


Q ss_pred             CceeEEEEcCCC
Q 017476          265 GKLSGVVSNPPY  276 (371)
Q Consensus       265 ~~fDlIvsNPPY  276 (371)
                      +++|++|.|.-+
T Consensus        77 g~id~lvnnAg~   88 (254)
T 3kzv_A           77 GKIDSLVANAGV   88 (254)
T ss_dssp             SCCCEEEEECCC
T ss_pred             CCccEEEECCcc
Confidence            579999999755

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=80.83  E-value=3.2  Score=31.68  Aligned_cols=71  Identities=27%  Similarity=0.241  Sum_probs=46.2

Q ss_pred             CCeEEEECCcccHHHHHHHHHhC-CC-cEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccc--cccCCCceeEEE
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLG-SK-GSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK--LKDVEGKLSGVV  271 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~-~~-~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~--l~~~~~~fDlIv  271 (371)
                      ..+|+=+|+  |.++..+++.+. .+ .+|+++|.+++.++.+.    .    ..+.++..|..+.  +...-..+|+||
T Consensus         5 ~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~----~----~~~~~~~~d~~~~~~~~~~~~~~d~vi   74 (118)
T 3ic5_A            5 RWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN----R----MGVATKQVDAKDEAGLAKALGGFDAVI   74 (118)
T ss_dssp             CEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----T----TTCEEEECCTTCHHHHHHHTTTCSEEE
T ss_pred             cCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH----h----CCCcEEEecCCCHHHHHHHHcCCCEEE
Confidence            357888888  666666655431 24 68999999998766544    1    2367788887542  111124689999


Q ss_pred             EcCCC
Q 017476          272 SNPPY  276 (371)
Q Consensus       272 sNPPY  276 (371)
                      .+.|+
T Consensus        75 ~~~~~   79 (118)
T 3ic5_A           75 SAAPF   79 (118)
T ss_dssp             ECSCG
T ss_pred             ECCCc
Confidence            87664

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=80.70  E-value=3.4  Score=38.42  Aligned_cols=94  Identities=15%  Similarity=0.095  Sum_probs=56.1

Q ss_pred             CCCCCCeEEEEC-Cc-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeE
Q 017476          192 DGLRDGFWVDLG-TG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSG  269 (371)
Q Consensus       192 ~~~~~~~VLDlG-~G-sG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDl  269 (371)
                      ...++.+||=.| +| .|.+++.+|+..  +++|++++ +++.++.++    ..|...   ++..+-.+.+......+|+
T Consensus       149 ~~~~g~~vlV~Ga~G~vG~~a~q~a~~~--Ga~vi~~~-~~~~~~~~~----~lGa~~---~i~~~~~~~~~~~~~g~D~  218 (321)
T 3tqh_A          149 EVKQGDVVLIHAGAGGVGHLAIQLAKQK--GTTVITTA-SKRNHAFLK----ALGAEQ---CINYHEEDFLLAISTPVDA  218 (321)
T ss_dssp             TCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEE-CHHHHHHHH----HHTCSE---EEETTTSCHHHHCCSCEEE
T ss_pred             CCCCCCEEEEEcCCcHHHHHHHHHHHHc--CCEEEEEe-ccchHHHHH----HcCCCE---EEeCCCcchhhhhccCCCE
Confidence            445677899886 44 688888899875  57999998 454466554    356542   2221111101111246899


Q ss_pred             EEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476          270 VVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE  328 (371)
Q Consensus       270 IvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle  328 (371)
                      |+-+-                             |-    ..++.+.+.|++||.++..
T Consensus       219 v~d~~-----------------------------g~----~~~~~~~~~l~~~G~iv~~  244 (321)
T 3tqh_A          219 VIDLV-----------------------------GG----DVGIQSIDCLKETGCIVSV  244 (321)
T ss_dssp             EEESS-----------------------------CH----HHHHHHGGGEEEEEEEEEC
T ss_pred             EEECC-----------------------------Cc----HHHHHHHHhccCCCEEEEe
Confidence            88520                             00    1225677899999988764

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=80.66  E-value=4.3  Score=36.84  Aligned_cols=80  Identities=15%  Similarity=0.027  Sum_probs=54.7

Q ss_pred             CCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccc-cc---------cCC
Q 017476          196 DGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK-LK---------DVE  264 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~-l~---------~~~  264 (371)
                      ++++|=.|++ |.++..+++.+ ..+.+|++++.+...++.+.+.+...+- .++.++..|+.+. -.         ...
T Consensus        12 ~k~vlITGas-~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~~~~~~v~~~~~~~~~~~   89 (311)
T 3o26_A           12 RRCAVVTGGN-KGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNH-ENVVFHQLDVTDPIATMSSLADFIKTHF   89 (311)
T ss_dssp             CCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTC-CSEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CcEEEEecCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEccCCCcHHHHHHHHHHHHHhC
Confidence            4567766654 55666666554 2467999999999888777776655542 3599999998765 10         012


Q ss_pred             CceeEEEEcCCCC
Q 017476          265 GKLSGVVSNPPYI  277 (371)
Q Consensus       265 ~~fDlIvsNPPYi  277 (371)
                      +++|++|.|.-..
T Consensus        90 g~iD~lv~nAg~~  102 (311)
T 3o26_A           90 GKLDILVNNAGVA  102 (311)
T ss_dssp             SSCCEEEECCCCC
T ss_pred             CCCCEEEECCccc
Confidence            5799999996544

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=80.63  E-value=7.4  Score=35.04  Aligned_cols=79  Identities=14%  Similarity=0.054  Sum_probs=49.4

Q ss_pred             CCCeEEEECCc-ccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHH-cCCCCcEEEEEcCcccccc---------c
Q 017476          195 RDGFWVDLGTG-SGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQR-YGLQDIIEIRQGSWFGKLK---------D  262 (371)
Q Consensus       195 ~~~~VLDlG~G-sG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~-~gl~~~v~~~~gD~~~~l~---------~  262 (371)
                      .++++|=.|.+ +|.++..+++.+ ..+.+|+.++.+++ .+...+.+.. .+   ++.++.+|+.+.-.         .
T Consensus         5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~   80 (275)
T 2pd4_A            5 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQELN---SPYVYELDVSKEEHFKSLYNSVKK   80 (275)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHHHhcC---CcEEEEcCCCCHHHHHHHHHHHHH
Confidence            35678888875 367777777654 24679999999875 2222222222 22   26788899865311         1


Q ss_pred             CCCceeEEEEcCCCC
Q 017476          263 VEGKLSGVVSNPPYI  277 (371)
Q Consensus       263 ~~~~fDlIvsNPPYi  277 (371)
                      ..+++|++|.|.-+.
T Consensus        81 ~~g~id~lv~nAg~~   95 (275)
T 2pd4_A           81 DLGSLDFIVHSVAFA   95 (275)
T ss_dssp             HTSCEEEEEECCCCC
T ss_pred             HcCCCCEEEECCccC
Confidence            125799999996543

>2dpm_A M.dpnii 1, protein (adenine-specific methyltransferase dpnii 1); DNA adenine methyltransferase, methylase; HET: SAM; 1.80A {Streptococcus pneumoniae} SCOP: c.66.1.28

Probab=80.62  E-value=9.2  Score=35.33  Aligned_cols=94  Identities=13%  Similarity=0.186  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHcCCCCcEEEE--EcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHH
Q 017476          230 PLAAAVAAFNAQRYGLQDIIEIR--QGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDY  307 (371)
Q Consensus       230 ~~al~~A~~n~~~~gl~~~v~~~--~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~  307 (371)
                      .+.+..+.+.++      ++++.  ++|+.+.+... ..=|+|.++|||.+...-..+.    .|      ..+.-+.++
T Consensus       156 ~~~l~~~~~~l~------~v~i~~~~~Df~~~i~~~-~~~~fvY~DPPY~~~~~~~~f~----~Y------~~~~f~~~d  218 (284)
T 2dpm_A          156 EELISAISVYIN------NNQLEIKVGDFEKAIVDV-RTGDFVYFDPPYIPLSETSAFT----SY------THEGFSFAD  218 (284)
T ss_dssp             HHHHHHHHHHHH------HSEEEEEESCGGGGGTTC-CTTCEEEECCCCCCC-----CC----CC------CCSSCCHHH
T ss_pred             HHHHHHHHHHhC------CCEEEEeCCCHHHHHHhc-CCCCEEEeCCCcccccCCCCcc----cc------ccCCCCHHH
Confidence            455555555544      26666  99998876643 4558999999998732211100    01      001123555


Q ss_pred             HHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHh
Q 017476          308 LLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLE  343 (371)
Q Consensus       308 ~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~  343 (371)
                      ..++.+.+.++=+.||.+++....   .+.++++.+
T Consensus       219 h~~L~~~l~~l~~~g~~~~lS~~d---~~~i~~ly~  251 (284)
T 2dpm_A          219 QVRLRDAFKRLSDTGAYVMLSNSS---SALVEELYK  251 (284)
T ss_dssp             HHHHHHHHHHHHTTTCEEEEEEES---CHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCCEEEEEcCC---CHHHHHHHc
Confidence            666666555443567887777743   266777764

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=80.62  E-value=12  Score=33.61  Aligned_cols=81  Identities=12%  Similarity=-0.001  Sum_probs=53.0

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCC------------HHHHHHHHHHHHHcCCCCcEEEEEcCcccccc
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLN------------PLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK  261 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis------------~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~  261 (371)
                      .++++|=.|+++ .++..+++.+ ..+.+|+.+|.+            .+.++.....+...+  .++.++..|+.+.-.
T Consensus         9 ~~k~~lVTGas~-gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~   85 (281)
T 3s55_A            9 EGKTALITGGAR-GMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTG--RRCISAKVDVKDRAA   85 (281)
T ss_dssp             TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHH
T ss_pred             CCCEEEEeCCCc-hHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHH
Confidence            466788877654 4555555543 246799999987            566665555555554  358999999865311


Q ss_pred             ---------cCCCceeEEEEcCCCCC
Q 017476          262 ---------DVEGKLSGVVSNPPYIP  278 (371)
Q Consensus       262 ---------~~~~~fDlIvsNPPYi~  278 (371)
                               ...+++|++|.|.-+..
T Consensus        86 v~~~~~~~~~~~g~id~lv~nAg~~~  111 (281)
T 3s55_A           86 LESFVAEAEDTLGGIDIAITNAGIST  111 (281)
T ss_dssp             HHHHHHHHHHHHTCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHhcCCCCEEEECCCCCC
Confidence                     11257999999976543

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=80.57  E-value=6.9  Score=35.65  Aligned_cols=80  Identities=19%  Similarity=0.042  Sum_probs=53.4

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE  264 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~  264 (371)
                      .++++|=.|+++ .++.++++.+ ..+.+|+.+|.+.+.++.+.+.+...+  .++.+++.|..+...         ...
T Consensus        27 ~~k~~lVTGas~-GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~  103 (283)
T 3v8b_A           27 PSPVALITGAGS-GIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAG--GQAIALEADVSDELQMRNAVRDLVLKF  103 (283)
T ss_dssp             CCCEEEEESCSS-HHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            355777777554 4555555543 146799999999988877666654433  458999999866311         112


Q ss_pred             CceeEEEEcCCCC
Q 017476          265 GKLSGVVSNPPYI  277 (371)
Q Consensus       265 ~~fDlIvsNPPYi  277 (371)
                      +++|++|.|.-+.
T Consensus       104 g~iD~lVnnAg~~  116 (283)
T 3v8b_A          104 GHLDIVVANAGIN  116 (283)
T ss_dssp             SCCCEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            5799999996543

>3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus}

Probab=80.29  E-value=6.9  Score=36.10  Aligned_cols=74  Identities=26%  Similarity=0.275  Sum_probs=48.0

Q ss_pred             CCceeEEEEcC--CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcC--cHHHHH
Q 017476          264 EGKLSGVVSNP--PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEK--QCKFLK  339 (371)
Q Consensus       264 ~~~fDlIvsNP--PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~--q~~~v~  339 (371)
                      -++||+|+.|-  ||-    .++.++-+ +|            --....+-..+..+|+|||.+++..-|+-  ..|.+.
T Consensus       209 ~grYDlVfvNv~TpyR----~HHYQQCe-DH------------A~~l~mL~~~al~~L~pGGtlv~~aYGyADR~SE~vV  271 (324)
T 3trk_A          209 LGRYDLVVINIHTPFR----IHHYQQCV-DH------------AMKLQMLGGDSLRLLKPGGSLLIRAYGYADRTSERVI  271 (324)
T ss_dssp             GCCEEEEEEECCCCCC----SSHHHHHH-HH------------HHHHHHHHHHGGGGEEEEEEEEEEECCCCSHHHHHHH
T ss_pred             CCceeEEEEecCCccc----cchHHHHH-HH------------HHHHHHHHHHHHhhcCCCceEEEEeecccccchHHHH
Confidence            38999999993  553    12333221 11            22344677788999999999999885442  445666


Q ss_pred             HHHhccccCCceeEEEEec
Q 017476          340 NYLENDSACSFCNVSIVSD  358 (371)
Q Consensus       340 ~~l~~~~~~gf~~v~~~~D  358 (371)
                      ..+.    ..|..+.+.+.
T Consensus       272 ~alA----RkF~~~rv~~P  286 (324)
T 3trk_A          272 CVLG----RKFRSSRALKP  286 (324)
T ss_dssp             HHHH----TTEEEEEEECC
T ss_pred             HHHH----hhheeeeeecC
Confidence            6665    45888877764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	371
d2h00a1	250	c.66.1.54 (A:5-254) Methyltransferase 10 domain co	1e-23
d2b3ta1	274	c.66.1.30 (A:2-275) N5-glutamine methyltransferase	9e-18
d1nv8a_	271	c.66.1.30 (A:) N5-glutamine methyltransferase, Hem	2e-16
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	5e-08
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	7e-08
d2ih2a1	223	c.66.1.27 (A:21-243) DNA methylase TaqI, N-termina	3e-05
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	3e-05
d1i9ga_	264	c.66.1.13 (A:) Probable methyltransferase Rv2118c	9e-05
d1dusa_	194	c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeo	4e-04
d2as0a2	324	c.66.1.51 (A:73-396) Hypothetical protein PH1915,	4e-04
d2f8la1	328	c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {	4e-04
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	5e-04
d1o9ga_	249	c.66.1.29 (A:) rRNA methyltransferase AviRa {Strep	9e-04
d1g8aa_	227	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro	0.001
d1ne2a_	197	c.66.1.32 (A:) Hypothetical protein Ta1320 {Archae	0.003

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.0 bits (238), Expect = 1e-23
 Identities = 34/222 (15%), Positives = 72/222 (32%), Gaps = 21/222 (9%)

Query: 156 EHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVR--DNDGLRDGFWVDLGTGSGAIAIGI 213
           E +  L + +     IP     L      + L+   D+D       +D+GTG+  I   +
Sbjct: 21  EDF-GLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLL 79

Query: 214 ARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV-----EGKLS 268
              L +    +A +++ +    A  N ++  L D+I++ +      L D      E    
Sbjct: 80  GATL-NGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYD 138

Query: 269 GVVSNPPYIPSDDI--SGLQVEVGKHEPRLAL-------DGGVDGLDYLLHLCNGTASML 319
             + NPP+  +             +  P                 L+++  + + +  + 
Sbjct: 139 FCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLK 198

Query: 320 KPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAG 361
           K   +++     +     LK  L          V+      G
Sbjct: 199 KRLRWYSCMLGKKCSLAPLKEELRI---QGVPKVTYTEFCQG 237

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} Length = 274

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

 Score = 80.0 bits (196), Expect = 9e-18
 Identities = 70/237 (29%), Positives = 105/237 (44%), Gaps = 15/237 (6%)

Query: 132 LDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDN 191
             +L  L  +R    +P  +L G   +  L L V     IPRP+TE +V+     L    
Sbjct: 51  CQQLDALLTRRR-DGEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQALARLPEQP 109

Query: 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEI 251
                   +DLGTG+GAIA+ +A        IIAVD  P A ++A  NAQ   +++I  I
Sbjct: 110 C-----RILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAIKNIH-I 162

Query: 252 RQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHL 311
            Q  WF  L     + + +VSNPPYI   D    Q    + EP  AL     G+  ++H+
Sbjct: 163 LQSDWFSALAG--QQFAMIVSNPPYIDEQDPHL-QQGDVRFEPLTALVAADSGMADIVHI 219

Query: 312 CNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTG 368
              + + L  GGF   E  G +Q + ++          + +V    D+   +R   G
Sbjct: 220 IEQSRNALVSGGFLLLEH-GWQQGEAVRQAFIL---AGYHDVETCRDYGDNERVTLG 272

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} Length = 271

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

 Score = 76.5 bits (187), Expect = 2e-16
 Identities = 69/231 (29%), Positives = 106/231 (45%), Gaps = 21/231 (9%)

Query: 141 QRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWV 200
           ++     P  Y++G + +  L   VEEGVF+PRPETE +V+L     +            
Sbjct: 60  EKRASGYPLHYILGEKEFMGLSFLVEEGVFVPRPETEELVELA----LELIRKYGIKTVA 115

Query: 201 DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL 260
           D+GTGSGAI + +A+   +   + A D++  A  +A  NA+R+G+ D   +R+G +    
Sbjct: 116 DIGTGSGAIGVSVAKFSDAI--VFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF 173

Query: 261 KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLK 320
           K+    +  ++SNPPY+ S       V     EP  AL GG DGLD+             
Sbjct: 174 KEKFASIEMILSNPPYVKSSAHLPKDV---LFEPPEALFGGEDGLDFYREFF---GRYDT 227

Query: 321 PGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFRQ 371
            G     E  GE Q + LK  + +           + D AG  RF+   R+
Sbjct: 228 SGKIVLMEI-GEDQVEELKKIVSD--------TVFLKDSAGKYRFLLLNRR 269

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (123), Expect = 5e-08
 Identities = 25/154 (16%), Positives = 65/154 (42%), Gaps = 13/154 (8%)

Query: 130 IGLDELYGL-WKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRP-ETELMVDLVSDVL 187
           +   ++ G    Q +      QY++      D V+ ++ G  I  P +  +++ ++    
Sbjct: 39  VPFGKIVGKFPGQILRSSFGKQYMLRRPALEDYVVLMKRGTAITFPKDINMILSMM---- 94

Query: 188 VRDNDGLRDGFWV-DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ 246
                 +  G  V + G+GSG +++ +++ +GS+G +I+ ++      +A  N + +   
Sbjct: 95  -----DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDS 149

Query: 247 DIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSD 280
             +   +  W   +  +   +SG   +   +  D
Sbjct: 150 WKLSHVEE-WPDNVDFIHKDISGATEDIKSLTFD 182

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 50.4 bits (120), Expect = 7e-08
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 193 GLRDG-FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEI 251
           GLR G   +++G GSG ++  I   L  KG++  V+ +      A  N   +     +  
Sbjct: 82  GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRT 141

Query: 252 RQGSWFGKLKD 262
            +      + D
Sbjct: 142 SRSDIADFISD 152

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} Length = 223

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

 Score = 42.4 bits (98), Expect = 3e-05
 Identities = 21/173 (12%), Positives = 44/173 (25%), Gaps = 9/173 (5%)

Query: 169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDL 228
           V  P    + MV L          G R    ++     G          G+    + V++
Sbjct: 1   VETPPEVVDFMVSLA-----EAPRGGR---VLEPACAHGPFLRAFREAHGTAYRFVGVEI 52

Query: 229 NPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVE 288
           +P A  +  +         + E  +           G +      P ++        +  
Sbjct: 53  DPKALDLPPWAEGILADFLLWEPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKA 112

Query: 289 VGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNY 341
               + +  L  G      +  L  G   +      +    +     +FL   
Sbjct: 113 FSTWKGKYNLY-GAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLARE 164

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 41.7 bits (97), Expect = 3e-05
 Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 9/95 (9%)

Query: 171 IPRPETELMVDLVSDVLVRDNDGLRDGFWV-DLGTGSGAIAIGIARVLGSKGSIIAVDLN 229
           +P P    +  L+  +               D+G G+G + +    + G    + A+D N
Sbjct: 13  VPGPTAMEVRCLIMCLA-----EPGKNDVAVDVGCGTGGVTL---ELAGRVRRVYAIDRN 64

Query: 230 PLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVE 264
           P A +    N QR+GL D + + +G     L  + 
Sbjct: 65  PEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIP 99

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 41.1 bits (96), Expect = 9e-05
 Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 8/126 (6%)

Query: 129 RIGLDELYGL-WKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVL 187
            I  D + GL     ++      +LV      D V+S+  G  +  P+    +    D+ 
Sbjct: 36  SIAHDAVIGLEQGSVVKSSNGALFLVLRPLLVDYVMSMPRGPQVIYPKDAAQIVHEGDI- 94

Query: 188 VRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQD 247
                G R    ++ G GSGA+ + + R +G  G +I+ +     A  A  N      Q 
Sbjct: 95  ---FPGAR---VLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQP 148

Query: 248 IIEIRQ 253
               R 
Sbjct: 149 PDNWRL 154

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 194

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 38.8 bits (89), Expect = 4e-04
 Identities = 40/203 (19%), Positives = 66/203 (32%), Gaps = 38/203 (18%)

Query: 159 RDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG 218
           + L    + GVF         VD  + +LV +    +D   +DLG G G I I +A  + 
Sbjct: 21  KKLKFKTDSGVFSYG-----KVDKGTKILVENVVVDKDDDILDLGCGYGVIGIALADEVK 75

Query: 219 SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIP 278
           S               +A  N +     D  +IR           + K + +++NPP   
Sbjct: 76  STTMADINRRAI---KLAKENIKLNN-LDNYDIRVVHSDLYENVKDRKYNKIITNPPIR- 130

Query: 279 SDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFL 338
                                    G + L  +      +LK  G        ++  K L
Sbjct: 131 ------------------------AGKEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSL 166

Query: 339 KNYLENDSACSFCNVSIVSDFAG 361
             Y+++     F NV  V+   G
Sbjct: 167 AKYMKD----VFGNVETVTIKGG 185

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 39.5 bits (91), Expect = 4e-04
 Identities = 34/186 (18%), Positives = 66/186 (35%), Gaps = 21/186 (11%)

Query: 150 QYLVGCEHWRDLVLSVEEG-----VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGT 204
           +              ++EG     V +   +T   +D   + L  +         +D+ T
Sbjct: 95  EIERVLLGKEKYRTIIQEGRAKFIVDMRGQKTGFFLDQRENRLALEKWVQPGDRVLDVFT 154

Query: 205 GSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVE 264
            +G  AI  A        +I +D +P A   A  NA+  G++D ++   GS F +++ ++
Sbjct: 155 YTGGFAIHAAI--AGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQ 212

Query: 265 GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGF 324
            K             D +        +HE  L       GL    ++     +++K GG 
Sbjct: 213 KK---------GEKFDIVVLDPPAFVQHEKDLK-----AGLRAYFNVNFAGLNLVKDGGI 258

Query: 325 FAFETN 330
               + 
Sbjct: 259 LVTCSC 264

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 4e-04
 Identities = 17/138 (12%), Positives = 44/138 (31%), Gaps = 17/138 (12%)

Query: 144 EKRKPFQYLVGCEHWRDLVLSVEEG-VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDL 202
           E RK  Q  +     + +   ++      P     ++  L+   +++    +     +D 
Sbjct: 73  EIRKGLQLALL----KGMKHGIQVNHQMTPDSIGFIVAYLLEK-VIQKKKNVS---ILDP 124

Query: 203 GTGSGAIAIGI----ARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG 258
             G+  +   +                VD++ L  ++A   A     +  +  + G    
Sbjct: 125 ACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLAN- 183

Query: 259 KLKDVEGKLSGVVSNPPY 276
               +   +  V+S+ P 
Sbjct: 184 ---LLVDPVDVVISDLPV 198

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.7 bits (92), Expect = 5e-04
 Identities = 23/149 (15%), Positives = 44/149 (29%), Gaps = 18/149 (12%)

Query: 177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA 236
           EL+ + +SDV  +      D F +DLG+G G   +  A   G        ++   A+ + 
Sbjct: 199 ELLPNFLSDVYQQCQLKKGDTF-MDLGSGVGNCVVQAALECGCA-LSFGCEIMDDASDLT 256

Query: 237 AFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRL 296
               +    +  +      +  +L +VE  L     +   +         + V       
Sbjct: 257 ILQYEELKKRCKL------YGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDE 310

Query: 297 ALDGGVDGLDYLLHLCNGTASMLKPGGFF 325
            L+                    K G   
Sbjct: 311 DLN----------KKVEKILQTAKVGCKI 329

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} Length = 249

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

 Score = 38.1 bits (88), Expect = 9e-04
 Identities = 13/93 (13%), Positives = 18/93 (19%), Gaps = 9/93 (9%)

Query: 214 ARVLGSKGSIIAVDLNPLAAAVA---AFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSG- 269
                 +           AA  A          G      IR    F             
Sbjct: 108 ELERREQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSA 167

Query: 270 ---VVSNPPYIP--SDDISGLQVEVGKHEPRLA 297
              V+++ PY      +       V      LA
Sbjct: 168 PDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLA 200

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 1/67 (1%)

Query: 190 DNDGLRDGFW-VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDI 248
            N  ++ G   + LG  SG  A  ++ ++G +G I  ++ +P          +       
Sbjct: 67  KNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVP 126

Query: 249 IEIRQGS 255
           I      
Sbjct: 127 ILGDATK 133

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 197

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 36.2 bits (83), Expect = 0.003
 Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 14/100 (14%)

Query: 181 DLVSDVL--VRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238
              +  L  + ++  +     +D GTG+G +A G   +     S+ A D++P A   A  
Sbjct: 32  STAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLL--GAESVTAFDIDPDAIETAKR 89

Query: 239 NAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIP 278
           N         +            ++ GK    + NPP+  
Sbjct: 90  NC------GGVNFMVADVS----EISGKYDTWIMNPPFGS 119

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	371
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	100.0
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	100.0
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.97
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.86
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.78
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.77
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.74
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.72
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.72
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.71
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.69
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.69
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.67
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.67
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.66
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.66
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.66
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.65
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.65
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.65
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	99.64
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.63
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.63
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.63
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.62
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.6
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.59
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.59
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.58
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.57
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.57
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.57
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.56
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.56
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.54
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.53
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.53
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.51
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.51
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.51
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.51
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.51
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.51
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.5
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.5
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.5
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.49
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	99.49
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.48
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.48
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.46
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.45
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.45
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.45
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.43
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.41
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.4
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.4
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.39
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.38
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.37
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.36
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.34
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.33
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.33
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	99.33
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.33
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.29
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	99.28
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	99.23
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.2
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.19
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	99.17
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.17
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.15
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	99.12
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	99.07
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	99.05
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	99.05
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.04
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	99.04
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.04
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	99.01
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.94
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.9
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.84
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.79
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.79
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	98.79
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.77
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.76
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.72
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.72
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.71
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.69
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.69
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.63
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.55
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.33
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	98.19
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.08
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.6
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.38
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	97.3
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	97.21
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	97.18
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	97.02
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	96.9
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	96.72
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	96.68
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	96.61
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	96.44
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.22
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.06
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	95.99
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	95.95
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.94
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	95.73
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	95.54
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	95.42
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	95.21
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.0
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	94.34
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	94.3
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	94.01
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	93.92
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	93.79
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	93.75
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	93.68
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	93.68
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	93.56
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	93.5
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	93.49
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	93.45
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	93.4
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	93.17
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	93.11
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	93.09
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	92.68
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	92.68
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	92.57
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	92.4
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	92.25
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	91.88
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	91.34
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	91.31
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	91.07
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	90.82
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	90.6
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	90.31
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	89.86
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	89.72
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	89.61
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	89.44
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	89.17
d2oo3a1	271	Uncharacterized protein LPG1296 {Legionella pneumo	89.04
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	88.86
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	88.84
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	88.79
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	88.36
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	88.25
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	87.65
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	87.45
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	87.33
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	87.31
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	87.29
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	87.22
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	87.15
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	87.01
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	86.04
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	85.93
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	85.86
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	85.86
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	85.64
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	85.63
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	85.63
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	85.34
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	83.26
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	83.11
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	82.41
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	81.7
d2dpma_	275	DNA methylase DpnM {Streptococcus pneumoniae [TaxI	81.55
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	81.1
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	80.47
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	80.11
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	80.02

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.1e-56  Score=419.96  Aligned_cols=273  Identities=27%  Similarity=0.358  Sum_probs=238.5

Q ss_pred             HHHHHHHHHHHhhhccccccCCCCCCCccchHHHHHHHHHhccCCCCCcccccccCCccccccCchHHHHHHHHHHHhhc
Q 017476           66 LKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEK  145 (371)
Q Consensus        66 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~  145 (371)
                      ..+|+++|.+++.+++.+             ..|++||++++++.++....+   .  .+..++.+..+.+..+..||.+
T Consensus         2 ~~~~l~~~~~~l~~~~~p-------------~~da~~ll~~~l~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~rr~~   63 (274)
T d2b3ta1           2 YQHWLREAISQLQASESP-------------RRDAEILLEHVTGRGRTFILA---F--GETQLTDEQCQQLDALLTRRRD   63 (274)
T ss_dssp             HHHHHHHHHHTTTTSSCH-------------HHHHHHHHHHHHTCCHHHHHH---T--TTCBCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCCCH-------------HHHHHHHHHHHhCcCHHHHhh---C--CCCCCCHHHHHHHHHHHHHHhc
Confidence            467888887775533221             379999999999998643321   1  1345777777888888899999


Q ss_pred             CCceeeEeecccccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEE
Q 017476          146 RKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIA  225 (371)
Q Consensus       146 ~~P~~yi~g~~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~g  225 (371)
                      |+|+|||+|+.+|++++|.|+++||||||+||.+++.++... .    ..+.+|||+|||||++++.++... |+.+|+|
T Consensus        64 g~PlqYI~G~~~F~~~~~~v~~~VlIPRpeTE~lv~~~l~~~-~----~~~~~vlDlGtGSG~I~i~la~~~-p~~~v~a  137 (274)
T d2b3ta1          64 GEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQALARL-P----EQPCRILDLGTGTGAIALALASER-PDCEIIA  137 (274)
T ss_dssp             TCCHHHHSCEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHS-C----SSCCEEEEETCTTSHHHHHHHHHC-TTSEEEE
T ss_pred             CcChhhhcCcEEEeeeEEEEeccccccccchhhhhhhHhhhh-c----ccccceeeeehhhhHHHHHHHhhC-Ccceeee
Confidence            999999999999999999999999999999999999988765 2    235689999999999999999986 8999999


Q ss_pred             EeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcH
Q 017476          226 VDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGL  305 (371)
Q Consensus       226 vDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl  305 (371)
                      +|+|+.|+++|++|+++++++ +++++++|+++++..  ++||+|||||||++..++..+ +++.+|||..||+||+||+
T Consensus       138 vDis~~Al~~A~~Na~~~~~~-~v~~~~~d~~~~~~~--~~fDlIvsNPPYi~~~~~~~~-~~v~~~eP~~AL~~g~dGl  213 (274)
T d2b3ta1         138 VDRMPDAVSLAQRNAQHLAIK-NIHILQSDWFSALAG--QQFAMIVSNPPYIDEQDPHLQ-QGDVRFEPLTALVAADSGM  213 (274)
T ss_dssp             ECSSHHHHHHHHHHHHHHTCC-SEEEECCSTTGGGTT--CCEEEEEECCCCBCTTCHHHH-SSGGGSSCSTTTBCHHHHT
T ss_pred             ccchhHHHhHHHHHHHHhCcc-cceeeecccccccCC--CceeEEEecchhhhhhhhccc-ccccccchhhhcccccccc
Confidence            999999999999999999996 499999999987764  689999999999999887555 4667899999999999999


Q ss_pred             HHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEecCCCCceEEEEEe
Q 017476          306 DYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFR  370 (371)
Q Consensus       306 ~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~~  370 (371)
                      +.++.+++.+.++|++||.+++|+ |..|.+.+.+++++   .||..|++++|++|++||++|+.
T Consensus       214 ~~~~~i~~~a~~~L~~~G~l~lEi-g~~q~~~v~~~l~~---~gf~~i~~~kDl~g~~R~v~~r~  274 (274)
T d2b3ta1         214 ADIVHIIEQSRNALVSGGFLLLEH-GWQQGEAVRQAFIL---AGYHDVETCRDYGDNERVTLGRY  274 (274)
T ss_dssp             HHHHHHHHHHGGGEEEEEEEEEEC-CSSCHHHHHHHHHH---TTCTTCCEEECTTSSEEEEEEEC
T ss_pred             hHHHHHHHHHHHhcCCCCEEEEEE-CchHHHHHHHHHHH---CCCCeEEEEECCCCCceEEEEeC
Confidence            999999999999999999999999 68999999999986   68999999999999999999973

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=4.9e-51  Score=383.59  Aligned_cols=268  Identities=29%  Similarity=0.410  Sum_probs=227.4

Q ss_pred             HHHHHHHHHHHHhhhccccccCCCCCCCccchHHHHHHHHHhccCCCCCcccccccCCccccccCchHHHHHHHHHHHhh
Q 017476           65 DLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIE  144 (371)
Q Consensus        65 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~  144 (371)
                      +|++|++.+.......      +++      ...|+++|++++++.++..+.   . +  +..++.+..+.+..|.+||.
T Consensus         2 ~i~~l~~~~~~~l~~~------~e~------~~lda~lll~~~l~~~~~~l~---~-~--~~~l~~~~~~~~~~~i~rR~   63 (271)
T d1nv8a_           2 KIWSLIRDCSGKLEGV------TET------SVLEVLLIVSRVLGIRKEDLF---L-K--DLGVSPTEEKRILELVEKRA   63 (271)
T ss_dssp             CHHHHHHHHHHHTTTT------CSC------HHHHHHHHHHHHHTCCGGGGC---C-S--SCCCCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcC------CCC------HHHHHHHHHHHHHCcCHHHHh---h-C--CCCCCHHHHHHHHHHHHHhh
Confidence            4677888776664311      111      238999999999999864433   1 1  23577777788889999999


Q ss_pred             cCCceeeEeecccccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEE
Q 017476          145 KRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSII  224 (371)
Q Consensus       145 ~~~P~~yi~g~~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~  224 (371)
                      +|+|+|||+|+++||+++|.|+++||||||+||.+++.+++.. ...   ...+++|+|||+|++++.+++.  ++++|+
T Consensus        64 ~~~Pl~YI~g~~~F~~~~f~v~~~vlIPRpeTE~lv~~~~~~~-~~~---~~~~vld~g~GsG~i~~~la~~--~~~~v~  137 (271)
T d1nv8a_          64 SGYPLHYILGEKEFMGLSFLVEEGVFVPRPETEELVELALELI-RKY---GIKTVADIGTGSGAIGVSVAKF--SDAIVF  137 (271)
T ss_dssp             TTCCHHHHHTEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHH-HHH---TCCEEEEESCTTSHHHHHHHHH--SSCEEE
T ss_pred             CCCChhhhcCcEEEeeeEEEEecCccCchhhhhhhhhhhhhhh-ccc---cccEEEEeeeeeehhhhhhhhc--ccceee
Confidence            9999999999999999999999999999999999999999877 322   2458999999999999999864  789999


Q ss_pred             EEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCc
Q 017476          225 AVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDG  304 (371)
Q Consensus       225 gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dG  304 (371)
                      |+|+|++|+++|++|++++++.+++.+..+||++......++||+||||||||+..+  .++.++ .|||+.||+||.||
T Consensus       138 a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~--~l~~~~-~~EP~~AL~gg~dG  214 (271)
T d1nv8a_         138 ATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPYVKSSA--HLPKDV-LFEPPEALFGGEDG  214 (271)
T ss_dssp             EEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCCBCGGG--SCTTSC-CCSCHHHHBCTTTS
T ss_pred             echhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEcccccCccc--ccceee-eeccccccccccch
Confidence            999999999999999999999999999999999887655679999999999998653  455555 69999999999999


Q ss_pred             HHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEecCCCCceEEEEEeC
Q 017476          305 LDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFRQ  371 (371)
Q Consensus       305 l~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~~~  371 (371)
                      +++|++++.   ++|+|||++++|+ |.+|.+.+.+++++   .||     ++|++|++||++++|+
T Consensus       215 l~~~r~i~~---~~L~~~G~l~~Ei-g~~Q~~~v~~l~~~---~g~-----~kDl~g~~R~~~~~k~  269 (271)
T d1nv8a_         215 LDFYREFFG---RYDTSGKIVLMEI-GEDQVEELKKIVSD---TVF-----LKDSAGKYRFLLLNRR  269 (271)
T ss_dssp             CHHHHHHHH---HCCCTTCEEEEEC-CTTCHHHHTTTSTT---CEE-----EECTTSSEEEEEEECC
T ss_pred             HHHHHHHHH---HhcCCCCEEEEEE-CHHHHHHHHHHHHh---CCE-----EeccCCCcEEEEEEEc
Confidence            999999974   6899999999999 78999999988874   444     7999999999999886

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.3e-31  Score=245.88  Aligned_cols=210  Identities=16%  Similarity=0.158  Sum_probs=156.6

Q ss_pred             cccceeeEeeCCcccccchHHHHHHHHHHHhhhcC--CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHH
Q 017476          157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDN--DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAA  234 (371)
Q Consensus       157 ~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~--~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~  234 (371)
                      +|||++|.|++++||||++|+..+...+..+....  ......++||+|||+|++++.+++++ ++++++|+|+|++|++
T Consensus        21 ~f~gl~~~v~~~~LiPr~~~r~~~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~-~~~~~~~~Di~~~al~   99 (250)
T d2h00a1          21 EDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFN   99 (250)
T ss_dssp             HHHCCCCCCCTTSCCCCHHHHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHH
T ss_pred             HHcCceEEeCCCeecCCCCCHHHHHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhC-CCccccceecCHHHHH
Confidence            47789999999999999998776655444332211  11234689999999999999999997 8899999999999999


Q ss_pred             HHHHHHHHcCCCCcEEEEEcCccccccc-----CCCceeEEEEcCCCCCCCCcccc--hhhhcccCccccccCCCCcH--
Q 017476          235 VAAFNAQRYGLQDIIEIRQGSWFGKLKD-----VEGKLSGVVSNPPYIPSDDISGL--QVEVGKHEPRLALDGGVDGL--  305 (371)
Q Consensus       235 ~A~~n~~~~gl~~~v~~~~gD~~~~l~~-----~~~~fDlIvsNPPYi~~~~~~~l--~~ev~~~ep~~aL~gg~dGl--  305 (371)
                      +|++|++.+++.+++.+++.++.+.+..     ..++||+|||||||++..+....  ......++|..++.++.+++  
T Consensus       100 ~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~  179 (250)
T d2h00a1         100 YAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMA  179 (250)
T ss_dssp             HHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHH
T ss_pred             HHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEEEecCcccccchhhhccccccccccCchhhcCcccccccc
Confidence            9999999999999999999876554321     24689999999999986554322  34456678888888877654  


Q ss_pred             -----HHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEecCCCC-ceEEEEEe
Q 017476          306 -----DYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGI-QRFVTGFR  370 (371)
Q Consensus       306 -----~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~-~R~~~a~~  370 (371)
                           .+++++++++..+++..|++..+++...+.+.+.++|++   .|+.+++++.+..|+ .|+++|+.
T Consensus       180 ~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~~~~l~~i~~~L~~---~g~~~i~~ie~~qG~~~r~iiaWs  247 (250)
T d2h00a1         180 EGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEELRI---QGVPKVTYTEFCQGRTMRWALAWS  247 (250)
T ss_dssp             HHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHHHHHHH---TTCSEEEEEEEEETTEEEEEEEEE
T ss_pred             ccchhhHHHHHHHHHHHHhhcCcEEEEEecchhhHHHHHHHHHH---cCCCeEEEEEecCCCEeEEEEEEE
Confidence                 689999999999999999999999666788999999986   679999999999885 69999984

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.86  E-value=4.1e-21  Score=170.20  Aligned_cols=167  Identities=25%  Similarity=0.333  Sum_probs=128.5

Q ss_pred             eeeEeeCCccccc---chHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 017476          161 LVLSVEEGVFIPR---PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA  237 (371)
Q Consensus       161 ~~~~v~~~vliPr---p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~  237 (371)
                      +.|...++||.+.   +.|+++++.    +    ...++.+|||+|||+|.+++.+++.   ..+|+++|+|+.+++.|+
T Consensus        23 ~~~~t~~gvF~~~~~d~~t~lLi~~----l----~~~~~~~VLDiGcG~G~~~~~la~~---~~~v~~iD~s~~~i~~a~   91 (194)
T d1dusa_          23 LKFKTDSGVFSYGKVDKGTKILVEN----V----VVDKDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAK   91 (194)
T ss_dssp             EEEEEETTSTTTTSCCHHHHHHHHH----C----CCCTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHH
T ss_pred             EEEEcCCCccCCCCcCHHHHHHHHh----C----CcCCCCeEEEEeecCChhHHHHHhh---ccccceeeeccccchhHH
Confidence            4577789999875   345665553    3    2335779999999999999999885   358999999999999999


Q ss_pred             HHHHHcCCCC-cEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHh
Q 017476          238 FNAQRYGLQD-IIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTA  316 (371)
Q Consensus       238 ~n~~~~gl~~-~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~  316 (371)
                      +|++.+++.+ +++++.+|+++.++  +++||+|++||||...                         .+....+++.+.
T Consensus        92 ~n~~~~~l~~~~i~~~~~d~~~~~~--~~~fD~Ii~~~p~~~~-------------------------~~~~~~~l~~~~  144 (194)
T d1dusa_          92 ENIKLNNLDNYDIRVVHSDLYENVK--DRKYNKIITNPPIRAG-------------------------KEVLHRIIEEGK  144 (194)
T ss_dssp             HHHHHTTCTTSCEEEEECSTTTTCT--TSCEEEEEECCCSTTC-------------------------HHHHHHHHHHHH
T ss_pred             HHHHHhCCccceEEEEEcchhhhhc--cCCceEEEEcccEEec-------------------------chhhhhHHHHHH
Confidence            9999998865 69999999988665  3789999999998521                         234557899999


Q ss_pred             cccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEecCCCCceEEEEEe
Q 017476          317 SMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFR  370 (371)
Q Consensus       317 ~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~~  370 (371)
                      ++|+|||.+++++......+.+...+++    .|.+++.+... +.-|++.++|
T Consensus       145 ~~LkpgG~l~i~~~~~~~~~~~~~~l~~----~f~~~~~~~~~-~gf~vl~a~K  193 (194)
T d1dusa_         145 ELLKDNGEIWVVIQTKQGAKSLAKYMKD----VFGNVETVTIK-GGYRVLKSKK  193 (194)
T ss_dssp             HHEEEEEEEEEEEESTHHHHHHHHHHHH----HHSCCEEEEEE-TTEEEEEEEC
T ss_pred             HhcCcCcEEEEEEeCcCCHHHHHHHHHH----hCCcEEEEEec-CCcEEEEEEE
Confidence            9999999999988554445566666664    36667766654 4456777766

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.78  E-value=2.7e-18  Score=158.48  Aligned_cols=177  Identities=23%  Similarity=0.386  Sum_probs=132.4

Q ss_pred             hHHHHHHHHHHHhhcCCcee----eEeeccccc-----ceeeEeeCCccc---ccchHHHHHHHHHHHhhhcCCCCCCCe
Q 017476          131 GLDELYGLWKQRIEKRKPFQ----YLVGCEHWR-----DLVLSVEEGVFI---PRPETELMVDLVSDVLVRDNDGLRDGF  198 (371)
Q Consensus       131 ~~~~~~~~~~~r~~~~~P~~----yi~g~~~f~-----~~~~~v~~~vli---Prp~te~lv~~~~~~~~~~~~~~~~~~  198 (371)
                      +.+++...|++..   .|+.    +|.  ..|.     ...+.++|+.-+   -+|.|.++++++.+..      .++.+
T Consensus        55 ~~~dW~~~w~~~~---~p~~~~~~~v~--~~~~~~~~~~~~i~i~pg~aFGTG~H~TT~l~l~~l~~~~------~~g~~  123 (254)
T d2nxca1          55 GDEDWLEAWRRDL---KPALAPPFVVL--APWHTWEGAEIPLVIEPGMAFGTGHHETTRLALKALARHL------RPGDK  123 (254)
T ss_dssp             CHHHHHHHHHHHC---CCEEETTEEEE--CTTCCCCSSSEEEECCCC-----CCSHHHHHHHHHHHHHC------CTTCE
T ss_pred             CcchHHHHHHhhC---CCEEECCEEEE--eccccCCCcceEEEEccccccCccccchhhHHHHHHHhhc------CccCE
Confidence            4468888888764   4442    122  2332     356777787766   3588899998887654      25679


Q ss_pred             EEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCC
Q 017476          199 WVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIP  278 (371)
Q Consensus       199 VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~  278 (371)
                      |||+|||+|.+++.+++.   +.+|+|+|+|+.|++.|++|++.+++.  ++++++|+.+..+.  ++||+|++|-.   
T Consensus       124 VLDiGcGsG~l~i~aa~~---g~~V~gvDis~~av~~A~~na~~n~~~--~~~~~~d~~~~~~~--~~fD~V~ani~---  193 (254)
T d2nxca1         124 VLDLGTGSGVLAIAAEKL---GGKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAALPF--GPFDLLVANLY---  193 (254)
T ss_dssp             EEEETCTTSHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHHGGG--CCEEEEEEECC---
T ss_pred             EEEcccchhHHHHHHHhc---CCEEEEEECChHHHHHHHHHHHHcCCc--eeEEeccccccccc--cccchhhhccc---
Confidence            999999999999988873   478999999999999999999999986  57899998765543  78999999832   


Q ss_pred             CCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEe
Q 017476          279 SDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVS  357 (371)
Q Consensus       279 ~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~  357 (371)
                                                ...+..+++.+.++|||||++++.---..|.+.+.+.+++   .||..++...
T Consensus       194 --------------------------~~~l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~---~Gf~~~~~~~  243 (254)
T d2nxca1         194 --------------------------AELHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAG---AGFRPLEEAA  243 (254)
T ss_dssp             --------------------------HHHHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHH---TTCEEEEEEE
T ss_pred             --------------------------cccHHHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHHH---CCCEEEEEEE
Confidence                                      1234467788889999999999853235688889988886   7898777655

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.77  E-value=2.4e-18  Score=151.17  Aligned_cols=138  Identities=22%  Similarity=0.214  Sum_probs=112.1

Q ss_pred             ccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcE
Q 017476          170 FIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDII  249 (371)
Q Consensus       170 liPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v  249 (371)
                      -+|.|..+.+...++..+    ...++.+|||+|||+|.+++.+|+.   ..+|+|+|+++++++.|++|++++|+.+++
T Consensus        12 ~~~~~t~~eir~~il~~l----~~~~g~~VLDiGcGsG~~s~~lA~~---~~~V~avD~~~~~l~~a~~n~~~~gl~~~v   84 (186)
T d1l3ia_          12 SVPGPTAMEVRCLIMCLA----EPGKNDVAVDVGCGTGGVTLELAGR---VRRVYAIDRNPEAISTTEMNLQRHGLGDNV   84 (186)
T ss_dssp             TSCCCCCHHHHHHHHHHH----CCCTTCEEEEESCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCTTE
T ss_pred             CCCCCChHHHHHHHHHhc----CCCCCCEEEEEECCeEccccccccc---ceEEEEecCCHHHHHHHHHHHHHcCCCcce
Confidence            346778888888888776    4456789999999999999999874   469999999999999999999999998889


Q ss_pred             EEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          250 EIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       250 ~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      +++++|+.+.... .+.||.|++|.++.                             .+..+++.+.++|||||++++..
T Consensus        85 ~~~~gda~~~~~~-~~~~D~v~~~~~~~-----------------------------~~~~~~~~~~~~LkpgG~lvi~~  134 (186)
T d1l3ia_          85 TLMEGDAPEALCK-IPDIDIAVVGGSGG-----------------------------ELQEILRIIKDKLKPGGRIIVTA  134 (186)
T ss_dssp             EEEESCHHHHHTT-SCCEEEEEESCCTT-----------------------------CHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEECchhhcccc-cCCcCEEEEeCccc-----------------------------cchHHHHHHHHHhCcCCEEEEEe
Confidence            9999998765443 46899999986531                             12367888899999999999887


Q ss_pred             CCcCcHHHHHHHHhc
Q 017476          330 NGEKQCKFLKNYLEN  344 (371)
Q Consensus       330 ~~~~q~~~v~~~l~~  344 (371)
                      ....+...+.+.+.+
T Consensus       135 ~~~e~~~~~~~~l~~  149 (186)
T d1l3ia_         135 ILLETKFEAMECLRD  149 (186)
T ss_dssp             CBHHHHHHHHHHHHH
T ss_pred             eccccHHHHHHHHHH
Confidence            544556666677765

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.74  E-value=6.8e-18  Score=146.73  Aligned_cols=142  Identities=21%  Similarity=0.251  Sum_probs=104.9

Q ss_pred             ccccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 017476          156 EHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAV  235 (371)
Q Consensus       156 ~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~  235 (371)
                      -.|.+..+.+..++   ||.++.+.+.+.+++...  ..++.+|||+|||+|.+++.++.+   +++|+++|+|+.+++.
T Consensus         7 g~~kg~~l~~~~~~---Rpt~~~v~e~lf~~l~~~--~~~g~~vLDl~~G~G~~~i~a~~~---ga~vv~vD~~~~a~~~   78 (171)
T d1ws6a1           7 GKARGVALKVPASA---RPSPVRLRKALFDYLRLR--YPRRGRFLDPFAGSGAVGLEAASE---GWEAVLVEKDPEAVRL   78 (171)
T ss_dssp             GGGTTCEECCCTTC---CCCCHHHHHHHHHHHHHH--CTTCCEEEEETCSSCHHHHHHHHT---TCEEEEECCCHHHHHH
T ss_pred             ccccCCEeCCCCCC---CCCcHHHHHHHHHHhhcc--ccCCCeEEEeccccchhhhhhhhc---cchhhhcccCHHHHhh
Confidence            45778888775542   788888877777776322  235679999999999999998874   4689999999999999


Q ss_pred             HHHHHHHcCCCCcEEEEEcCccccc-ccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHH
Q 017476          236 AAFNAQRYGLQDIIEIRQGSWFGKL-KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNG  314 (371)
Q Consensus       236 A~~n~~~~gl~~~v~~~~gD~~~~l-~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~  314 (371)
                      |++|++.+++.+++....+|.+... ....++||+|++||||....                        .+.+..+++ 
T Consensus        79 ~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DPPY~~~~------------------------~~~l~~l~~-  133 (171)
T d1ws6a1          79 LKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYAMDL------------------------AALFGELLA-  133 (171)
T ss_dssp             HHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTTSCT------------------------THHHHHHHH-
T ss_pred             hhHHHHhhccccceeeeehhcccccccccCCccceeEEccccccCH------------------------HHHHHHHHH-
Confidence            9999999999877766666653221 22246899999999994210                        122334443 


Q ss_pred             HhcccccCcEEEEEECC
Q 017476          315 TASMLKPGGFFAFETNG  331 (371)
Q Consensus       315 a~~~LkpgG~lvle~~~  331 (371)
                       ..+|++||++++|+..
T Consensus       134 -~~ll~~~g~ivie~~~  149 (171)
T d1ws6a1         134 -SGLVEAGGLYVLQHPK  149 (171)
T ss_dssp             -HTCEEEEEEEEEEEET
T ss_pred             -cCCcCCCeEEEEEecC
Confidence             3689999999999953

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=6.6e-17  Score=147.34  Aligned_cols=122  Identities=22%  Similarity=0.169  Sum_probs=99.1

Q ss_pred             chHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 017476          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ  253 (371)
Q Consensus       174 p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~  253 (371)
                      |.++..++.+.+.+    ...++.+|||+|||+|.++..+++..  +.+|+|||+|+.+++.|++++...|+.++++|++
T Consensus        16 p~~~~~~~~l~~~~----~l~pg~~VLDiGCG~G~~~~~la~~~--~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~   89 (245)
T d1nkva_          16 PFTEEKYATLGRVL----RMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIH   89 (245)
T ss_dssp             SCCHHHHHHHHHHT----CCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred             CCCHHHHHHHHHHc----CCCCCCEEEEEcCCCCHHHHHHHHhc--CCEEEEEecccchhhHHHHHHHHhhccccchhhh
Confidence            45666777777665    44567899999999999999999874  5799999999999999999999999999999999


Q ss_pred             cCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          254 GSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       254 gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      +|+.+...  +++||+|+|.              ++..|-+            +...+++++.+.|||||++++..
T Consensus        90 ~d~~~~~~--~~~fD~v~~~--------------~~~~~~~------------d~~~~l~~~~r~LkPGG~l~i~~  137 (245)
T d1nkva_          90 NDAAGYVA--NEKCDVAACV--------------GATWIAG------------GFAGAEELLAQSLKPGGIMLIGE  137 (245)
T ss_dssp             SCCTTCCC--SSCEEEEEEE--------------SCGGGTS------------SSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             hHHhhccc--cCceeEEEEE--------------ehhhccC------------CHHHHHHHHHHHcCcCcEEEEEe
Confidence            99987543  4789999983              1222222            13378899999999999999964

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.72  E-value=8.4e-18  Score=143.27  Aligned_cols=109  Identities=19%  Similarity=0.228  Sum_probs=89.4

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      ..+.+|||+|||||.+++.++.+  ...+|++||+++.+++.+++|++.+++.++++++++|+.+.+....++||+|++|
T Consensus        13 ~~g~~vlDl~~GtG~~~iea~~r--ga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~D   90 (152)
T d2esra1          13 FNGGRVLDLFAGSGGLAIEAVSR--GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLD   90 (152)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEEC
T ss_pred             CCCCeEEEcCCccCHHHHHHHHh--CcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEec
Confidence            35789999999999999998875  3459999999999999999999999999999999999987665556899999999


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHH--hcccccCcEEEEEECC
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGT--ASMLKPGGFFAFETNG  331 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a--~~~LkpgG~lvle~~~  331 (371)
                      |||..                           ..+...++.+  .++|++||.+++|+..
T Consensus        91 PPy~~---------------------------~~~~~~l~~i~~~~~L~~~g~iiiE~~~  123 (152)
T d2esra1          91 PPYAK---------------------------ETIVATIEALAAKNLLSEQVMVVCETDK  123 (152)
T ss_dssp             CSSHH---------------------------HHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             hhhcc---------------------------chHHHHHHHHHHCCCcCCCeEEEEEeCC
Confidence            99941                           1112223322  4689999999999853

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.71  E-value=3.6e-17  Score=150.39  Aligned_cols=129  Identities=19%  Similarity=0.183  Sum_probs=108.4

Q ss_pred             CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEE
Q 017476          192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV  271 (371)
Q Consensus       192 ~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIv  271 (371)
                      +..++.+|||+|||||.++..+|+.+++.++|+++|.++++++.|++|+++++..+++++..+|+.+.+.+  +.||.|+
T Consensus        82 ~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~--~~fD~V~  159 (250)
T d1yb2a1          82 GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISD--QMYDAVI  159 (250)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCS--CCEEEEE
T ss_pred             CCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeeccccc--ceeeeee
Confidence            55678899999999999999999988788999999999999999999999887667899999999876553  6899999


Q ss_pred             EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCce
Q 017476          272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFC  351 (371)
Q Consensus       272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~  351 (371)
                      .|.|-                 |.              .+++.+.+.|||||++++..+...|...+.+.+++   .||.
T Consensus       160 ld~p~-----------------p~--------------~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~---~gf~  205 (250)
T d1yb2a1         160 ADIPD-----------------PW--------------NHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSA---SGMH  205 (250)
T ss_dssp             ECCSC-----------------GG--------------GSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGG---GTEE
T ss_pred             ecCCc-----------------hH--------------HHHHHHHHhcCCCceEEEEeCCcChHHHHHHHHHH---CCCc
Confidence            97652                 11              35677889999999999998776777777777765   6798


Q ss_pred             eEEEE
Q 017476          352 NVSIV  356 (371)
Q Consensus       352 ~v~~~  356 (371)
                      ++++.
T Consensus       206 ~i~~~  210 (250)
T d1yb2a1         206 HLETV  210 (250)
T ss_dssp             EEEEE
T ss_pred             eeEEE
Confidence            77654

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.69  E-value=3.7e-16  Score=145.28  Aligned_cols=133  Identities=21%  Similarity=0.294  Sum_probs=102.9

Q ss_pred             CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEE
Q 017476          192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV  271 (371)
Q Consensus       192 ~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIv  271 (371)
                      ...++.+|||+|||+|.++..+++++  +.+|+|||+|+.+++.|++++...|+.++++++++|+.+ ++...++||+|+
T Consensus        64 ~l~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~-l~~~~~sfD~V~  140 (282)
T d2o57a1          64 VLQRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLE-IPCEDNSYDFIW  140 (282)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTS-CSSCTTCEEEEE
T ss_pred             CCCCCCEEEEeCCCCcHHHhhhhccC--CcEEEEEeccchhhhhhhccccccccccccccccccccc-ccccccccchhh
Confidence            44567899999999999999999875  579999999999999999999999999899999999976 343458999999


Q ss_pred             EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC---------------------
Q 017476          272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN---------------------  330 (371)
Q Consensus       272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~---------------------  330 (371)
                      ++              ++..|-|.            ...+++++.++|||||++++...                     
T Consensus       141 ~~--------------~~l~h~~d------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (282)
T d2o57a1         141 SQ--------------DAFLHSPD------------KLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLH  194 (282)
T ss_dssp             EE--------------SCGGGCSC------------HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCS
T ss_pred             cc--------------chhhhccC------------HHHHHHHHHHhcCCCcEEEEEEeecCCCCchhHHHHHHHHhccC
Confidence            93              22233221            33788999999999999988532                     


Q ss_pred             CcCcHHHHHHHHhccccCCceeEEEE
Q 017476          331 GEKQCKFLKNYLENDSACSFCNVSIV  356 (371)
Q Consensus       331 ~~~q~~~v~~~l~~~~~~gf~~v~~~  356 (371)
                      .........+++++   .||..+++.
T Consensus       195 ~~~s~~~~~~~l~~---~Gf~~i~~~  217 (282)
T d2o57a1         195 DMGSLGLYRSLAKE---CGLVTLRTF  217 (282)
T ss_dssp             SCCCHHHHHHHHHH---TTEEEEEEE
T ss_pred             CCCCHHHHHHHHHH---cCCceEEEE
Confidence            01123445566664   789877665

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=7e-17  Score=141.70  Aligned_cols=140  Identities=16%  Similarity=0.172  Sum_probs=104.4

Q ss_pred             cccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 017476          157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA  236 (371)
Q Consensus       157 ~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A  236 (371)
                      .|.+..+...++. .-||.|..+.+.+..++...   ..+.+|||++||||++++.++.+  ...+|++||.|+.+++.+
T Consensus         9 ~~kg~~l~~~~~~-~~RPt~~~vre~lfn~l~~~---~~~~~vLDlfaGsG~~giealsr--Ga~~v~~VE~~~~a~~~~   82 (183)
T d2fpoa1           9 QWRGRKLPVPDSP-GLRPTTDRVRETLFNWLAPV---IVDAQCLDCFAGSGALGLEALSR--YAAGATLIEMDRAVSQQL   82 (183)
T ss_dssp             GGTTCEEECCCC-------CHHHHHHHHHHHHHH---HTTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHH
T ss_pred             ccCCCEecCCCCC-CcCcCcHHHHHHHHhhhhcc---cchhhhhhhhccccceeeeEEec--CcceeEEEEEeechhhHH
Confidence            3566677666553 35899988888887776322   24679999999999999998885  446999999999999999


Q ss_pred             HHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHH-
Q 017476          237 AFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGT-  315 (371)
Q Consensus       237 ~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a-  315 (371)
                      ++|++.++..+ ++++++|+++.+.....+||+|++||||-...                           +..+++.+ 
T Consensus        83 k~N~~~~~~~~-~~ii~~d~~~~l~~~~~~fDlIf~DPPY~~~~---------------------------~~~~l~~l~  134 (183)
T d2fpoa1          83 IKNLATLKAGN-ARVVNSNAMSFLAQKGTPHNIVFVDPPFRRGL---------------------------LEETINLLE  134 (183)
T ss_dssp             HHHHHHTTCCS-EEEECSCHHHHHSSCCCCEEEEEECCSSSTTT---------------------------HHHHHHHHH
T ss_pred             HHHHhhccccc-eeeeeecccccccccccccCEEEEcCccccch---------------------------HHHHHHHHH
Confidence            99999988765 89999999887766567899999999995211                           11222222 


Q ss_pred             -hcccccCcEEEEEEC
Q 017476          316 -ASMLKPGGFFAFETN  330 (371)
Q Consensus       316 -~~~LkpgG~lvle~~  330 (371)
                       ..+|+++|++++|+.
T Consensus       135 ~~~~L~~~~iIiiE~~  150 (183)
T d2fpoa1         135 DNGWLADEALIYVESE  150 (183)
T ss_dssp             HTTCEEEEEEEEEEEE
T ss_pred             HCCCCCCCeEEEEEec
Confidence             357999999999984

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.67  E-value=3.1e-16  Score=145.38  Aligned_cols=130  Identities=23%  Similarity=0.312  Sum_probs=110.7

Q ss_pred             CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEE
Q 017476          192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV  271 (371)
Q Consensus       192 ~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIv  271 (371)
                      +..++.+|||+|||+|.++..+|+.++++++|+++|+++++++.|++|+++.++.+++.+..+|..+....  ..||.|+
T Consensus       100 ~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~--~~~D~V~  177 (266)
T d1o54a_         100 DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE--KDVDALF  177 (266)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC--CSEEEEE
T ss_pred             CCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccc--cceeeeE
Confidence            45678899999999999999999988788999999999999999999999999988899999998665443  6799999


Q ss_pred             EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCce
Q 017476          272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFC  351 (371)
Q Consensus       272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~  351 (371)
                      .+.|-                 |.              .+++.+.+.|||||.+++..+...|.+.+.+.+++   .||.
T Consensus       178 ~d~p~-----------------p~--------------~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~---~gF~  223 (266)
T d1o54a_         178 LDVPD-----------------PW--------------NYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQE---LPFI  223 (266)
T ss_dssp             ECCSC-----------------GG--------------GTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHH---SSEE
T ss_pred             ecCCC-----------------HH--------------HHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHH---CCce
Confidence            86441                 11              46778889999999999988777788888888875   7899


Q ss_pred             eEEEEe
Q 017476          352 NVSIVS  357 (371)
Q Consensus       352 ~v~~~~  357 (371)
                      ++++..
T Consensus       224 ~i~~~E  229 (266)
T d1o54a_         224 RIEVWE  229 (266)
T ss_dssp             EEEEEC
T ss_pred             eEEEEE
Confidence            888764

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.67  E-value=1.1e-16  Score=140.47  Aligned_cols=142  Identities=20%  Similarity=0.239  Sum_probs=107.4

Q ss_pred             ccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 017476          158 WRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA  237 (371)
Q Consensus       158 f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~  237 (371)
                      |.|..+...++ ..-||.+..+-+.+..++ .  ....+.+|||++||||++++.++.+  ...+|++||.|+.+++.++
T Consensus         8 ~kg~~l~~~~~-~~~RPt~~~vrealFn~l-~--~~~~~~~vLDlfaGsG~~g~ea~sr--Ga~~v~~ve~~~~a~~~~~   81 (182)
T d2fhpa1           8 YGGRRLKALDG-DNTRPTTDKVKESIFNMI-G--PYFDGGMALDLYSGSGGLAIEAVSR--GMDKSICIEKNFAALKVIK   81 (182)
T ss_dssp             TTTCBCCCCCC-CSSCCCCHHHHHHHHHHH-C--SCCSSCEEEETTCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHH
T ss_pred             cCCCEecCCCC-CCcCcCcHHHHHHHHHHH-H--HhcCCCEEEEcccccccccceeeec--chhHHHHHHHHHHHHHHHH
Confidence            44555543333 234899999999888887 2  2235789999999999999999885  4568999999999999999


Q ss_pred             HHHHHcCCCCcEEEEEcCccccccc---CCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHH
Q 017476          238 FNAQRYGLQDIIEIRQGSWFGKLKD---VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNG  314 (371)
Q Consensus       238 ~n~~~~gl~~~v~~~~gD~~~~l~~---~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~  314 (371)
                      +|++.++..++++++++|+++.+..   ...+||+|+.||||....                       ....+..+++ 
T Consensus        82 ~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIflDPPY~~~~-----------------------~~~~l~~i~~-  137 (182)
T d2fhpa1          82 ENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQE-----------------------IVSQLEKMLE-  137 (182)
T ss_dssp             HHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCC-----------------------HHHHHHHHHH-
T ss_pred             HHhhhhhcccccccccccchhhhhhhcccCCCcceEEechhhhhhH-----------------------HHHHHHHHHH-
Confidence            9999999988899999998776542   245899999999994211                       0112223322 


Q ss_pred             HhcccccCcEEEEEEC
Q 017476          315 TASMLKPGGFFAFETN  330 (371)
Q Consensus       315 a~~~LkpgG~lvle~~  330 (371)
                       ..+|+++|++++|+.
T Consensus       138 -~~~L~~~giIi~E~~  152 (182)
T d2fhpa1         138 -RQLLTNEAVIVCETD  152 (182)
T ss_dssp             -TTCEEEEEEEEEEEE
T ss_pred             -CCCCCCCEEEEEEcC
Confidence             358999999999994

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.66  E-value=8.7e-16  Score=137.64  Aligned_cols=106  Identities=21%  Similarity=0.177  Sum_probs=85.1

Q ss_pred             CCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEE
Q 017476          193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS  272 (371)
Q Consensus       193 ~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvs  272 (371)
                      ..++.+|||+|||+|.++..+++.   ..+|+|+|+|+.+++.|++++...+.++ ++++++|+.+ ++...++||+|+|
T Consensus        13 l~~~~rVLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~i~~A~~~~~~~~~~~-i~~~~~d~~~-l~~~~~~fD~v~~   87 (231)
T d1vl5a_          13 LKGNEEVLDVATGGGHVANAFAPF---VKKVVAFDLTEDILKVARAFIEGNGHQQ-VEYVQGDAEQ-MPFTDERFHIVTC   87 (231)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCC-C-CCSCTTCEEEEEE
T ss_pred             CCCcCEEEEecccCcHHHHHHHHh---CCEEEEEECCHHHHhhhhhccccccccc-cccccccccc-ccccccccccccc
Confidence            345679999999999999999885   3689999999999999999999998764 9999999976 4433589999999


Q ss_pred             cCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       273 NPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      +              .+..|-            .....+++++.++|||||++++..
T Consensus        88 ~--------------~~l~~~------------~d~~~~l~~~~r~LkpgG~l~i~~  118 (231)
T d1vl5a_          88 R--------------IAAHHF------------PNPASFVSEAYRVLKKGGQLLLVD  118 (231)
T ss_dssp             E--------------SCGGGC------------SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             c--------------cccccc------------CCHHHHHHHHHHhcCCCcEEEEEe
Confidence            3              122222            124478899999999999998853

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.66  E-value=4.8e-16  Score=143.77  Aligned_cols=131  Identities=17%  Similarity=0.200  Sum_probs=107.9

Q ss_pred             CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc--CCCCcEEEEEcCcccccccCCCceeE
Q 017476          192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY--GLQDIIEIRQGSWFGKLKDVEGKLSG  269 (371)
Q Consensus       192 ~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~--gl~~~v~~~~gD~~~~l~~~~~~fDl  269 (371)
                      +..++.+|||+|||||.+++.+|+.++|+++|+++|+++++++.|++|++..  +..+++.+.++|..+. ...++.||.
T Consensus        93 ~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~-~~~~~~fDa  171 (264)
T d1i9ga_          93 DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS-ELPDGSVDR  171 (264)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC-CCCTTCEEE
T ss_pred             CCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccc-cccCCCcce
Confidence            5567889999999999999999999889999999999999999999999875  3456799999998763 222578999


Q ss_pred             EEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCC
Q 017476          270 VVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACS  349 (371)
Q Consensus       270 IvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~g  349 (371)
                      |+.|-|-                 |.              ..++.+.+.|||||.+++..+...|.+.+.+.++.  .++
T Consensus       172 V~ldlp~-----------------P~--------------~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~l~~--~~~  218 (264)
T d1i9ga_         172 AVLDMLA-----------------PW--------------EVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRA--KQC  218 (264)
T ss_dssp             EEEESSC-----------------GG--------------GGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHH--HSS
T ss_pred             EEEecCC-----------------HH--------------HHHHHHHhccCCCCEEEEEeCccChHHHHHHHHHH--cCC
Confidence            9986442                 21              45677889999999999999888888888888864  267


Q ss_pred             ceeEEEE
Q 017476          350 FCNVSIV  356 (371)
Q Consensus       350 f~~v~~~  356 (371)
                      |.++++.
T Consensus       219 f~~i~~~  225 (264)
T d1i9ga_         219 WTEPRAW  225 (264)
T ss_dssp             BCCCEEE
T ss_pred             eecceEE
Confidence            9887764

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.66  E-value=2.5e-16  Score=150.07  Aligned_cols=129  Identities=23%  Similarity=0.313  Sum_probs=101.5

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc---CCCceeEEE
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD---VEGKLSGVV  271 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~---~~~~fDlIv  271 (371)
                      ++.+|||+|||+|.+++.+++.  ...+|+++|+|+.+++.|++|++.+|+.++++++++|+++.+..   ..++||+|+
T Consensus       145 ~g~~VLDl~~g~G~~si~~a~~--ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi  222 (324)
T d2as0a2         145 PGDRVLDVFTYTGGFAIHAAIA--GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV  222 (324)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeeecccCcccchhhhhhhc--CCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchh
Confidence            4679999999999999999885  34599999999999999999999999988899999998875432   246899999


Q ss_pred             EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC-cCcHHHHHHHH
Q 017476          272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG-EKQCKFLKNYL  342 (371)
Q Consensus       272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~-~~q~~~v~~~l  342 (371)
                      +|||+....... .                ..+...|..++..+.++|+|||+|++.... .-..+...+.+
T Consensus       223 ~DpP~~~~~~~~-~----------------~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~~~f~~~v  277 (324)
T d2as0a2         223 LDPPAFVQHEKD-L----------------KAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMI  277 (324)
T ss_dssp             ECCCCSCSSGGG-H----------------HHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHH
T ss_pred             cCCccccCCHHH-H----------------HHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCHHHHHHHH
Confidence            999986543211 0                123567889999999999999999987632 22334444444

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.65  E-value=5.7e-16  Score=139.97  Aligned_cols=106  Identities=21%  Similarity=0.246  Sum_probs=86.3

Q ss_pred             CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEE
Q 017476          192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV  271 (371)
Q Consensus       192 ~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIv  271 (371)
                      +..++.+|||+|||+|.++..+++.   ..+|+|||+|+.+++.|++++...++++ +.++++|+.+ ++..+++||+|+
T Consensus        13 ~~~~~~rILDiGcGtG~~~~~la~~---~~~v~gvD~S~~~l~~A~~~~~~~~~~~-~~~~~~d~~~-~~~~~~~fD~v~   87 (234)
T d1xxla_          13 ECRAEHRVLDIGAGAGHTALAFSPY---VQECIGVDATKEMVEVASSFAQEKGVEN-VRFQQGTAES-LPFPDDSFDIIT   87 (234)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHHTCCS-EEEEECBTTB-CCSCTTCEEEEE
T ss_pred             CCCCCCEEEEeCCcCcHHHHHHHHh---CCeEEEEeCChhhhhhhhhhhccccccc-cccccccccc-ccccccccceee
Confidence            4456789999999999999999985   3689999999999999999999998865 9999999966 444468999999


Q ss_pred             EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476          272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE  328 (371)
Q Consensus       272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle  328 (371)
                      |+              .+..|-|            ....+++++.++|||||++++.
T Consensus        88 ~~--------------~~l~~~~------------d~~~~l~~~~r~LkpgG~~~~~  118 (234)
T d1xxla_          88 CR--------------YAAHHFS------------DVRKAVREVARVLKQDGRFLLV  118 (234)
T ss_dssp             EE--------------SCGGGCS------------CHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ee--------------ceeeccc------------CHHHHHHHHHHeeCCCcEEEEE
Confidence            94              1222222            1347889999999999998884

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.65  E-value=2.3e-15  Score=136.79  Aligned_cols=121  Identities=19%  Similarity=0.191  Sum_probs=89.8

Q ss_pred             HHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcc
Q 017476          178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF  257 (371)
Q Consensus       178 ~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~  257 (371)
                      ..++.+.+.+ .. ...++++|||+|||+|.++..+++.   +.+|+|||+|+.|++.|++++...+.  +++++++|+.
T Consensus        22 ~~~~~~~~~~-~~-~~~~~~~vLDiGCG~G~~~~~l~~~---g~~v~GvD~S~~ml~~A~~~~~~~~~--~v~~~~~d~~   94 (246)
T d1y8ca_          22 KWSDFIIEKC-VE-NNLVFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDIS   94 (246)
T ss_dssp             HHHHHHHHHH-HT-TTCCTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGG
T ss_pred             HHHHHHHHHH-HH-hCCCCCeEEEEeCcCCHHHHHHHHh---CCccEeeccchhhhhhccccccccCc--cceeeccchh
Confidence            3445555544 22 1234679999999999999999985   46899999999999999999988876  3999999997


Q ss_pred             cccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          258 GKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       258 ~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      +..  ..++||+|+|.     ...+        .|-+         ..+....+++.+.++|+|||.+++.+
T Consensus        95 ~~~--~~~~fD~i~~~-----~~~~--------~~~~---------~~~~~~~~l~~~~~~LkpgG~~i~~~  142 (246)
T d1y8ca_          95 NLN--INRKFDLITCC-----LDST--------NYII---------DSDDLKKYFKAVSNHLKEGGVFIFDI  142 (246)
T ss_dssp             GCC--CSCCEEEEEEC-----TTGG--------GGCC---------SHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hhc--cccccccccee-----eeee--------eccC---------CHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence            642  24789999982     0111        1111         13456689999999999999998743

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.65  E-value=1.6e-15  Score=140.09  Aligned_cols=163  Identities=16%  Similarity=0.187  Sum_probs=117.6

Q ss_pred             ceeeEeeC--CcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 017476          160 DLVLSVEE--GVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA  237 (371)
Q Consensus       160 ~~~~~v~~--~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~  237 (371)
                      +..|.++.  ..|.|+..++..  .+.+.+      .++.+|||+|||+|.+++.+|+.  ..++|+|+|+|+.+++.++
T Consensus        78 g~~~~~d~~~~~f~~~~~~er~--ri~~~~------~~g~~VlD~~aG~G~~~l~~a~~--~~~~V~avd~n~~a~~~~~  147 (260)
T d2frna1          78 GIKYKLDVAKIMFSPANVKERV--RMAKVA------KPDELVVDMFAGIGHLSLPIAVY--GKAKVIAIEKDPYTFKFLV  147 (260)
T ss_dssp             TEEEEEETTTSCCCGGGHHHHH--HHHHHC------CTTCEEEETTCTTTTTHHHHHHH--TCCEEEEECCCHHHHHHHH
T ss_pred             CeeEEeccccccEecCCHHHHH--HHHhhc------CCccEEEECcceEcHHHHHHHHh--CCcEEEEecCCHHHHHHHH
Confidence            55566664  456677666543  222222      24679999999999999999986  4579999999999999999


Q ss_pred             HHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhc
Q 017476          238 FNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTAS  317 (371)
Q Consensus       238 ~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~  317 (371)
                      +|++.+++.++++++++|..+...  .+.||.|++|||+...                              .++..+.+
T Consensus       148 ~N~~~n~l~~~v~~~~~D~~~~~~--~~~~D~Ii~~~p~~~~------------------------------~~l~~a~~  195 (260)
T d2frna1         148 ENIHLNKVEDRMSAYNMDNRDFPG--ENIADRILMGYVVRTH------------------------------EFIPKALS  195 (260)
T ss_dssp             HHHHHTTCTTTEEEECSCTTTCCC--CSCEEEEEECCCSSGG------------------------------GGHHHHHH
T ss_pred             HHHHHhCCCceEEEEEcchHHhcc--CCCCCEEEECCCCchH------------------------------HHHHHHHh
Confidence            999999999999999999987654  3789999999986310                              34566778


Q ss_pred             ccccCcEEEEEEC------CcCcHHHHHHHHhccccCCce----eEEEEecCC-CCceEEE
Q 017476          318 MLKPGGFFAFETN------GEKQCKFLKNYLENDSACSFC----NVSIVSDFA-GIQRFVT  367 (371)
Q Consensus       318 ~LkpgG~lvle~~------~~~q~~~v~~~l~~~~~~gf~----~v~~~~Dl~-g~~R~~~  367 (371)
                      .|++||++.+...      .....+.+.++.+.   .||.    .++..++++ +..++++
T Consensus       196 ~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~---~g~~v~~~~~~~Vk~yaP~~~~v~~  253 (260)
T d2frna1         196 IAKDGAIIHYHNTVPEKLMPREPFETFKRITKE---YGYDVEKLNELKIKRYAPGVWHVVL  253 (260)
T ss_dssp             HEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHH---TTCEEEEEEEEEEEEETTTEEEEEE
T ss_pred             hcCCCCEEEEEeccccccchhhHHHHHHHHHHH---cCCceEEEEEEEEECcCCCccEEEE
Confidence            8999999866431      11234556666654   4563    233456776 5666664

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=7e-16  Score=146.63  Aligned_cols=160  Identities=14%  Similarity=0.122  Sum_probs=115.5

Q ss_pred             cccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhC----CCcEEEEEeCCHHHHHHHHHHHHHcC
Q 017476          169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG----SKGSIIAVDLNPLAAAVAAFNAQRYG  244 (371)
Q Consensus       169 vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~----~~~~V~gvDis~~al~~A~~n~~~~g  244 (371)
                      +++||+.++.+++.+....    ....+.+|+|+|||+|.+++.+.+++.    ...+++|+|+++.+++.|+.|+..++
T Consensus        95 ~~TP~~i~~~m~~l~~~~~----~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~  170 (328)
T d2f8la1          95 QMTPDSIGFIVAYLLEKVI----QKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR  170 (328)
T ss_dssp             CCCCHHHHHHHHHHHHHHH----TTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT
T ss_pred             EECcHHHHHHHHHHHHHHh----CCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhh
Confidence            5679999999998877766    223456899999999999999987542    34489999999999999999999888


Q ss_pred             CCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcE
Q 017476          245 LQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGF  324 (371)
Q Consensus       245 l~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~  324 (371)
                      ..  ..+.++|......  .++||+||+||||.......     .......   .......+.+..+++.+.+.|++||+
T Consensus       171 ~~--~~~~~~d~~~~~~--~~~fD~vi~NPPy~~~~~~~-----~~~~~~~---~~~~~~~~~~~~Fi~~~~~~Lk~~G~  238 (328)
T d2f8la1         171 QK--MTLLHQDGLANLL--VDPVDVVISDLPVGYYPDDE-----NAKTFEL---CREEGHSFAHFLFIEQGMRYTKPGGY  238 (328)
T ss_dssp             CC--CEEEESCTTSCCC--CCCEEEEEEECCCSEESCHH-----HHTTSTT---CCSSSCEEHHHHHHHHHHHTEEEEEE
T ss_pred             hh--hhhhccccccccc--cccccccccCCCCCCCccch-----hhhhcch---hcccCcchHHHHHHHHHHHhcCCCCc
Confidence            64  6788888776544  37899999999996432211     1011111   11111223345689999999999999


Q ss_pred             EEEEECC----cCcHHHHHHHHhc
Q 017476          325 FAFETNG----EKQCKFLKNYLEN  344 (371)
Q Consensus       325 lvle~~~----~~q~~~v~~~l~~  344 (371)
                      +++.++.    ....+.+++.+.+
T Consensus       239 ~~~I~p~~~l~~~~~~~lR~~L~~  262 (328)
T d2f8la1         239 LFFLVPDAMFGTSDFAKVDKFIKK  262 (328)
T ss_dssp             EEEEEEGGGGGSTTHHHHHHHHHH
T ss_pred             eEEEecCccccCchhHHHHHHHHh
Confidence            9888742    2456778887775

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.63  E-value=2.2e-15  Score=143.03  Aligned_cols=129  Identities=14%  Similarity=0.084  Sum_probs=99.4

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEcCccccccc---CCCceeEE
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ-DIIEIRQGSWFGKLKD---VEGKLSGV  270 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~-~~v~~~~gD~~~~l~~---~~~~fDlI  270 (371)
                      ++++|||++||+|.+++.++..  ....|++||+|+.+++.|++|++.+++. .+++++++|.++.+..   ..++||+|
T Consensus       144 ~g~~VLdlf~~~G~~sl~aa~~--ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~I  221 (317)
T d2b78a2         144 AGKTVLNLFSYTAAFSVAAAMG--GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII  221 (317)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHT--TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCceeecCCCCcHHHHHHHhC--CCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEE
Confidence            4679999999999999988873  4458999999999999999999999985 5799999999876542   24689999


Q ss_pred             EEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCc-CcHHHHHHHH
Q 017476          271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGE-KQCKFLKNYL  342 (371)
Q Consensus       271 vsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~-~q~~~v~~~l  342 (371)
                      |+|||.......                 +-.++...|..+++.+.++|+|||+|++.++.. -..+.+.+.+
T Consensus       222 i~DPP~f~~~~~-----------------~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~~~~f~~~v  277 (317)
T d2b78a2         222 IIDPPSFARNKK-----------------EVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQI  277 (317)
T ss_dssp             EECCCCC----------------------CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHH
T ss_pred             EEcChhhccchh-----------------HHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCHHHHHHHH
Confidence            999997543211                 012346778899999999999999999987532 2344444443

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.63  E-value=3.9e-15  Score=140.27  Aligned_cols=165  Identities=13%  Similarity=0.069  Sum_probs=112.8

Q ss_pred             ccceeeEeeCCccccc---chHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHH
Q 017476          158 WRDLVLSVEEGVFIPR---PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAA  234 (371)
Q Consensus       158 f~~~~~~v~~~vliPr---p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~  234 (371)
                      +.++.|.+++..+--.   ++....-.++.+.+ ..  ..++.+|||++||+|.+++.++..   +++|++||.|+.+++
T Consensus        95 e~gl~f~v~~~~~~~tG~f~dqr~nr~~~~~~~-~~--~~~~~rVLdlf~~tG~~sl~aa~~---GA~V~~VD~s~~al~  168 (309)
T d2igta1          95 LLGVEFLGRFTAFRHVGVFPEQIVHWEWLKNAV-ET--ADRPLKVLNLFGYTGVASLVAAAA---GAEVTHVDASKKAIG  168 (309)
T ss_dssp             ETTEEEEEECCSSSCCSCCGGGHHHHHHHHHHH-HH--SSSCCEEEEETCTTCHHHHHHHHT---TCEEEEECSCHHHHH
T ss_pred             EeEEEEEEeccCCCccccccchhHHHHHHHHHH-hh--ccCCCeEEEecCCCcHHHHHHHhC---CCeEEEEeChHHHHH
Confidence            3578888887544321   34444444444443 11  124679999999999999999874   569999999999999


Q ss_pred             HHHHHHHHcCCCC-cEEEEEcCcccccccC---CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHH
Q 017476          235 VAAFNAQRYGLQD-IIEIRQGSWFGKLKDV---EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLH  310 (371)
Q Consensus       235 ~A~~n~~~~gl~~-~v~~~~gD~~~~l~~~---~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~  310 (371)
                      .|++|++.+++.+ +++++++|+++.+...   .++||+||+|||+......... ..               ..+.+..
T Consensus       169 ~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~-~~---------------~~~~~~~  232 (309)
T d2igta1         169 WAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEV-WQ---------------LFDHLPL  232 (309)
T ss_dssp             HHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCE-EE---------------HHHHHHH
T ss_pred             HHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEECCCcccccccchh-HH---------------HHHHHHH
Confidence            9999999999875 6999999998865422   4689999999997532221100 00               1234556


Q ss_pred             HHHHHhcccccCcEEEEEEC-C-cCcHHHHHHHHhc
Q 017476          311 LCNGTASMLKPGGFFAFETN-G-EKQCKFLKNYLEN  344 (371)
Q Consensus       311 il~~a~~~LkpgG~lvle~~-~-~~q~~~v~~~l~~  344 (371)
                      +++.+..+|+|||.+++.+. . .-....+.+++.+
T Consensus       233 l~~~~~~ll~~~g~~ll~t~~s~~~s~~~~~~~~~~  268 (309)
T d2igta1         233 MLDICREILSPKALGLVLTAYSIRASFYSMHELMRE  268 (309)
T ss_dssp             HHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCEEEEecCCCCCCHHHHHHHHHH
Confidence            88889999999997555442 2 1244455555543

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.63  E-value=1e-15  Score=145.47  Aligned_cols=115  Identities=23%  Similarity=0.248  Sum_probs=94.5

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---cCCCceeEEE
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---DVEGKLSGVV  271 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---~~~~~fDlIv  271 (371)
                      ++++|||+|||+|.+++.+|+.   ..+|+++|+|+.+++.|++|++.+|+.+ ++++++|.++.+.   ...++||+|+
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ngl~~-~~~i~~d~~~~~~~~~~~~~~fD~Vi  220 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGN-VRVLEANAFDLLRRLEKEGERFDLVV  220 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcCCCC-cceeeccHHHHhhhhHhhhcCCCEEE
Confidence            4679999999999999998874   4799999999999999999999999964 9999999877533   2346899999


Q ss_pred             EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC
Q 017476          272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN  330 (371)
Q Consensus       272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~  330 (371)
                      +|||+.......     +            ..+...+..++..+.++|+|||.|++...
T Consensus       221 ~DpP~~~~~~~~-----~------------~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc  262 (318)
T d1wxxa2         221 LDPPAFAKGKKD-----V------------ERAYRAYKEVNLRAIKLLKEGGILATASC  262 (318)
T ss_dssp             ECCCCSCCSTTS-----H------------HHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EcCCccccchHH-----H------------HHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            999986543210     0            11356788999999999999999999774

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.8e-15  Score=141.58  Aligned_cols=136  Identities=18%  Similarity=0.188  Sum_probs=107.0

Q ss_pred             CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc----------CCCCcEEEEEcCcccccc
Q 017476          192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY----------GLQDIIEIRQGSWFGKLK  261 (371)
Q Consensus       192 ~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~----------gl~~~v~~~~gD~~~~l~  261 (371)
                      +..++.+|||+|||+|.+++.||+.++++++|+++|+++++++.|++|+++.          +..+++.+..+|+.+...
T Consensus        95 ~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~  174 (324)
T d2b25a1          95 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE  174 (324)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-
T ss_pred             CCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhccc
Confidence            4557889999999999999999999888999999999999999999999875          335679999999866543


Q ss_pred             cC-CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHH
Q 017476          262 DV-EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKN  340 (371)
Q Consensus       262 ~~-~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~  340 (371)
                      .. .+.||.|+.+-|-                 |.              ..+..+.+.|||||++++-++...|...+.+
T Consensus       175 ~~~~~~fD~V~LD~p~-----------------P~--------------~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~  223 (324)
T d2b25a1         175 DIKSLTFDAVALDMLN-----------------PH--------------VTLPVFYPHLKHGGVCAVYVVNITQVIELLD  223 (324)
T ss_dssp             ------EEEEEECSSS-----------------TT--------------TTHHHHGGGEEEEEEEEEEESSHHHHHHHHH
T ss_pred             ccCCCCcceEeecCcC-----------------HH--------------HHHHHHHHhccCCCEEEEEeCCHHHHHHHHH
Confidence            22 3579999986442                 11              3567788999999999999988888888888


Q ss_pred             HHhccccCCceeEEEEecC
Q 017476          341 YLENDSACSFCNVSIVSDF  359 (371)
Q Consensus       341 ~l~~~~~~gf~~v~~~~Dl  359 (371)
                      .|+.. ..+|.++++.--+
T Consensus       224 ~l~~~-~~~f~~i~~~E~~  241 (324)
T d2b25a1         224 GIRTC-ELALSCEKISEVI  241 (324)
T ss_dssp             HHHHH-TCCEEEEEEECCC
T ss_pred             HHHHc-CCCceeeEEEEEE
Confidence            88753 2479888876443

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.60  E-value=9.2e-15  Score=131.17  Aligned_cols=107  Identities=20%  Similarity=0.155  Sum_probs=85.6

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      ++.+|||+|||+|..+..+++.+ .++.+|+|+|+|+.|++.|++++...+...++++..+|..+. +  .+.+|+|+++
T Consensus        39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~-~--~~~~d~i~~~  115 (225)
T d1im8a_          39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV-E--IKNASMVILN  115 (225)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTC-C--CCSEEEEEEE
T ss_pred             CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcc-c--cccceeeEEe
Confidence            46799999999999999999864 267899999999999999999999888877899999998653 2  3689999984


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE  328 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle  328 (371)
                      -              +..|-+          .+....+++++++.|||||.+++.
T Consensus       116 ~--------------~l~~~~----------~~d~~~~l~~i~~~LkpgG~li~~  146 (225)
T d1im8a_         116 F--------------TLQFLP----------PEDRIALLTKIYEGLNPNGVLVLS  146 (225)
T ss_dssp             S--------------CGGGSC----------GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             e--------------eccccC----------hhhHHHHHHHHHHhCCCCceeecc
Confidence            1              111111          123447899999999999999885

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.59  E-value=5.2e-15  Score=134.16  Aligned_cols=108  Identities=24%  Similarity=0.229  Sum_probs=84.9

Q ss_pred             CCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEE
Q 017476          193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS  272 (371)
Q Consensus       193 ~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvs  272 (371)
                      ..++++|||+|||+|.+++.+++.   +.+|+|||+|+.|++.|++++...++  +++++++|+.+. +. .++||+|+|
T Consensus        39 ~~~~~~iLDiGcGtG~~~~~l~~~---~~~v~gvD~s~~mi~~a~~~~~~~~~--~i~~~~~d~~~l-~~-~~~fD~I~~  111 (251)
T d1wzna1          39 KREVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEI-AF-KNEFDAVTM  111 (251)
T ss_dssp             SSCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGC-CC-CSCEEEEEE
T ss_pred             CCCCCEEEEeCCCCCccchhhccc---ceEEEEEeeccccccccccccccccc--cchheehhhhhc-cc-ccccchHhh
Confidence            345679999999999999999985   46899999999999999999998876  499999999663 32 368999998


Q ss_pred             cCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC
Q 017476          273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN  330 (371)
Q Consensus       273 NPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~  330 (371)
                      .     ...+        .|-          .......+++.+.++|||||++++..+
T Consensus       112 ~-----~~~~--------~~~----------~~~~~~~~L~~~~~~LkpgG~lii~~~  146 (251)
T d1wzna1         112 F-----FSTI--------MYF----------DEEDLRKLFSKVAEALKPGGVFITDFP  146 (251)
T ss_dssp             C-----SSGG--------GGS----------CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             h-----hhhh--------hcC----------ChHHHHHHHHHHHHHcCCCcEEEEEec
Confidence            2     0111        110          023456889999999999999998764

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.59  E-value=4.5e-14  Score=129.28  Aligned_cols=144  Identities=17%  Similarity=0.182  Sum_probs=107.7

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ..++|||+|||+|.++..+++++ |+.+++++|+ +++++.|++++...++.++++++.+|+++..+   .+||+|+++ 
T Consensus        80 ~~~~VLDvGcG~G~~~~~la~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~---~~~D~v~~~-  153 (253)
T d1tw3a2          80 NVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLP---RKADAIILS-  153 (253)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCS---SCEEEEEEE-
T ss_pred             cCCEEEEeCCCCCHHHHHHHHhc-ceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhcc---cchhheeec-
Confidence            45799999999999999999986 8999999998 67999999999999999999999999987543   579999983 


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC-----------------------
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG-----------------------  331 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~-----------------------  331 (371)
                                   .+..|-+          -+....+++++.+.|||||.+++....                       
T Consensus       154 -------------~vlh~~~----------d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~  210 (253)
T d1tw3a2         154 -------------FVLLNWP----------DHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLG  210 (253)
T ss_dssp             -------------SCGGGSC----------HHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHS
T ss_pred             -------------cccccCC----------chhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCC
Confidence                         1212211          123447899999999999988874310                       


Q ss_pred             --cCcHHHHHHHHhccccCCceeEEEEec---CCCCceEEEEEe
Q 017476          332 --EKQCKFLKNYLENDSACSFCNVSIVSD---FAGIQRFVTGFR  370 (371)
Q Consensus       332 --~~q~~~v~~~l~~~~~~gf~~v~~~~D---l~g~~R~~~a~~  370 (371)
                        ....++.++++++   .||+.+++..-   ..+..+-++..+
T Consensus       211 g~~rt~~e~~~ll~~---AGf~~~~v~~~~~p~~~~~~~li~~~  251 (253)
T d1tw3a2         211 GALRTREKWDGLAAS---AGLVVEEVRQLPSPTIPYDLSLLVLA  251 (253)
T ss_dssp             CCCCBHHHHHHHHHH---TTEEEEEEEEEECSSSSCEEEEEEEE
T ss_pred             CcCCCHHHHHHHHHH---CCCeEEEEEECCCCCCCccEEEEEEe
Confidence              1134666777875   78987776542   234455555443

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.58  E-value=2.2e-14  Score=134.46  Aligned_cols=125  Identities=16%  Similarity=0.130  Sum_probs=100.0

Q ss_pred             HHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcc
Q 017476          178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF  257 (371)
Q Consensus       178 ~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~  257 (371)
                      ..++.+++.+    ...++.+|||+|||.|.+++.+|+++  +.+|+|+++|++.++.|++.++..|+.+++.+...|+.
T Consensus        48 ~k~~~~~~~l----~l~~G~~VLDiGCG~G~~~~~~a~~~--g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~  121 (291)
T d1kpia_          48 AKRKLALDKL----NLEPGMTLLDIGCGWGSTMRHAVAEY--DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE  121 (291)
T ss_dssp             HHHHHHHHTT----CCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGG
T ss_pred             HHHHHHHHhc----CCCCCCEEEEecCcchHHHHHHHHhc--CcceeeccchHHHHHHHHHHHHhhccchhhhhhhhccc
Confidence            3444444444    56678899999999999999999886  57999999999999999999999999999999999974


Q ss_pred             cccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          258 GKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       258 ~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      .    .+++||.|+|              -++..|-+.   .++..|...++.+++.+.++|||||.+++.+
T Consensus       122 ~----~~~~fD~i~s--------------ie~~eH~~~---~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~  172 (291)
T d1kpia_         122 E----FDEPVDRIVS--------------LGAFEHFAD---GAGDAGFERYDTFFKKFYNLTPDDGRMLLHT  172 (291)
T ss_dssp             G----CCCCCSEEEE--------------ESCGGGTTC---CSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred             c----cccccceEee--------------chhHHhcch---hhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence            2    2478999999              223233221   1233567889999999999999999999865

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.57  E-value=1.5e-14  Score=128.46  Aligned_cols=80  Identities=20%  Similarity=0.331  Sum_probs=67.9

Q ss_pred             CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEE
Q 017476          192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV  271 (371)
Q Consensus       192 ~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIv  271 (371)
                      ....+++|||+|||+|.+++.++..  +..+|+|||+|+.+++.|++|++.++..  .+++.+|..+.    .++||+||
T Consensus        43 ~dl~g~~vLDlg~GtG~l~i~a~~~--g~~~v~~vdi~~~~~~~a~~N~~~~~~~--~~~~~~d~~~~----~~~fD~Vi  114 (201)
T d1wy7a1          43 GDIEGKVVADLGAGTGVLSYGALLL--GAKEVICVEVDKEAVDVLIENLGEFKGK--FKVFIGDVSEF----NSRVDIVI  114 (201)
T ss_dssp             TSSTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHTGGGTTS--EEEEESCGGGC----CCCCSEEE
T ss_pred             CCCCCCEEEECcCcchHHHHHHHHc--CCCEEEEEcCcHHHHHHHHHHHHHcCCC--ceEEECchhhh----CCcCcEEE
Confidence            3456789999999999999988774  4469999999999999999999988764  88999998653    46899999


Q ss_pred             EcCCCCCC
Q 017476          272 SNPPYIPS  279 (371)
Q Consensus       272 sNPPYi~~  279 (371)
                      +||||...
T Consensus       115 ~nPP~~~~  122 (201)
T d1wy7a1         115 MNPPFGSQ  122 (201)
T ss_dssp             ECCCCSSS
T ss_pred             EcCccccc
Confidence            99999643

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.57  E-value=1.1e-14  Score=129.28  Aligned_cols=106  Identities=19%  Similarity=0.136  Sum_probs=84.7

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      +..+|||+|||+|.++..+++.   +.+|+|+|+|+.+++.|++++...+..  +.++++|+.+ ++...++||+|+|+ 
T Consensus        37 ~~~~ILDiGcG~G~~~~~la~~---~~~v~giD~S~~~i~~ak~~~~~~~~~--~~~~~~d~~~-l~~~~~~fD~I~~~-  109 (226)
T d1ve3a1          37 KRGKVLDLACGVGGFSFLLEDY---GFEVVGVDISEDMIRKAREYAKSRESN--VEFIVGDARK-LSFEDKTFDYVIFI-  109 (226)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCC--CEEEECCTTS-CCSCTTCEEEEEEE-
T ss_pred             CCCEEEEECCCcchhhhhHhhh---hcccccccccccchhhhhhhhcccccc--cccccccccc-ccccCcCceEEEEe-
Confidence            4569999999999999999984   579999999999999999999887743  7889999866 34345789999993 


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN  330 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~  330 (371)
                                   .+..|-+          -.....+++.+.++|||||.+++...
T Consensus       110 -------------~~l~~~~----------~~d~~~~l~~i~~~LkpgG~lii~~~  142 (226)
T d1ve3a1         110 -------------DSIVHFE----------PLELNQVFKEVRRVLKPSGKFIMYFT  142 (226)
T ss_dssp             -------------SCGGGCC----------HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -------------cchhhCC----------hhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence                         1222211          12355789999999999999999874

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.1e-14  Score=130.62  Aligned_cols=133  Identities=13%  Similarity=0.056  Sum_probs=100.8

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      .++.+|||+|||+|.++..+++..  ..+|+|||+|+.+++.|++++...+.. +++++++|+.+. ....++||+|+++
T Consensus        59 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~ak~~~~~~~~~-~~~f~~~d~~~~-~~~~~~fD~I~~~  134 (222)
T d2ex4a1          59 TGTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGKR-VRNYFCCGLQDF-TPEPDSYDVIWIQ  134 (222)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGGG-EEEEEECCGGGC-CCCSSCEEEEEEE
T ss_pred             CCCCEEEEeccCCCHhhHHHHHhc--CCEEEEeecCHHHhhcccccccccccc-cccccccccccc-ccccccccccccc
Confidence            345789999999999999887643  358999999999999999998877764 489999999764 3335799999993


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCc--------------CcHHHHH
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGE--------------KQCKFLK  339 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~--------------~q~~~v~  339 (371)
                                    .+..|-|          -.....+++.+.+.|+|||.+++..+..              ...+.++
T Consensus       135 --------------~~l~h~~----------~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (222)
T d2ex4a1         135 --------------WVIGHLT----------DQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVR  190 (222)
T ss_dssp             --------------SCGGGSC----------HHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHH
T ss_pred             --------------cccccch----------hhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHH
Confidence                          1222222          1234578999999999999999863211              1367788


Q ss_pred             HHHhccccCCceeEEEEe
Q 017476          340 NYLENDSACSFCNVSIVS  357 (371)
Q Consensus       340 ~~l~~~~~~gf~~v~~~~  357 (371)
                      +++++   .||..++...
T Consensus       191 ~l~~~---aGf~ii~~~~  205 (222)
T d2ex4a1         191 RIICS---AGLSLLAEER  205 (222)
T ss_dssp             HHHHH---TTCCEEEEEE
T ss_pred             HHHHH---cCCEEEEEEE
Confidence            88886   7898877664

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.56  E-value=9.5e-15  Score=127.85  Aligned_cols=140  Identities=19%  Similarity=0.200  Sum_probs=100.0

Q ss_pred             ccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 017476          158 WRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA  237 (371)
Q Consensus       158 f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~  237 (371)
                      |.|..+.+..+. .-||.+..+-+.+..++...   ..+.+|||++||||++++.++.+  ....|+.||.+..+++..+
T Consensus        10 ~kg~~l~~~~~~-~~RPt~~~vrealFn~l~~~---~~~~~vLDlFaGsG~~glEalSR--GA~~v~fVE~~~~a~~~ik   83 (183)
T d2ifta1          10 WRGRKLPVLNSE-GLRPTGDRVKETLFNWLMPY---IHQSECLDGFAGSGSLGFEALSR--QAKKVTFLELDKTVANQLK   83 (183)
T ss_dssp             TTTCEEECC----------CHHHHHHHHHHHHH---HTTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHH
T ss_pred             cCCCEecCCCCC-CcCcCcHHHHHHHHHHhhhh---cccceEeecccCccceeeeeeee--cceeeEEeecccchhhhHh
Confidence            556677655543 35899988888888877322   24569999999999999999986  4569999999999999999


Q ss_pred             HHHHHcCCCC-cEEEEEcCcccccccC--CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHH
Q 017476          238 FNAQRYGLQD-IIEIRQGSWFGKLKDV--EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNG  314 (371)
Q Consensus       238 ~n~~~~gl~~-~v~~~~gD~~~~l~~~--~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~  314 (371)
                      +|++..+..+ ...++..|..+.+...  ..+||+|++||||-..                           .+..+++.
T Consensus        84 ~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlDPPY~~~---------------------------~~~~~l~~  136 (183)
T d2ifta1          84 KNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDPPFHFN---------------------------LAEQAISL  136 (183)
T ss_dssp             HHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECCCSSSC---------------------------HHHHHHHH
T ss_pred             hHHhhhcccccccccccccccccccccccCCcccEEEechhHhhh---------------------------hHHHHHHH
Confidence            9999998754 5788888876644322  3579999999999521                           11223333


Q ss_pred             H--hcccccCcEEEEEEC
Q 017476          315 T--ASMLKPGGFFAFETN  330 (371)
Q Consensus       315 a--~~~LkpgG~lvle~~  330 (371)
                      +  ..+|+++|++++|+.
T Consensus       137 l~~~~~L~~~~liiiE~~  154 (183)
T d2ifta1         137 LCENNWLKPNALIYVETE  154 (183)
T ss_dssp             HHHTTCEEEEEEEEEEEE
T ss_pred             HHHhCCcCCCcEEEEEec
Confidence            3  358999999999995

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.56  E-value=2e-14  Score=126.56  Aligned_cols=105  Identities=20%  Similarity=0.180  Sum_probs=86.0

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      .+++|||+|||+|..+..++++   +.+|+|+|+|+.+++.|++++...++++ +++..+|+.+...  +++||+|+++-
T Consensus        30 ~~grvLDiGcG~G~~~~~la~~---g~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~d~~~~~~--~~~fD~I~~~~  103 (198)
T d2i6ga1          30 APGRTLDLGCGNGRNSLYLAAN---GYDVTAWDKNPASMANLERIKAAEGLDN-LQTDLVDLNTLTF--DGEYDFILSTV  103 (198)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEECCTTTCCC--CCCEEEEEEES
T ss_pred             CCCcEEEECCCCCHHHHHHHHH---hhhhccccCcHHHHHHHHHHhhhccccc-hhhhheecccccc--cccccEEEEee
Confidence            4669999999999999999985   4799999999999999999999999874 9999999876433  47899999964


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      .+              .|-|.          .....+++.+.+.|+|||++++..
T Consensus       104 ~~--------------~~~~~----------~~~~~~l~~~~~~L~pgG~~~~~~  134 (198)
T d2i6ga1         104 VM--------------MFLEA----------QTIPGLIANMQRCTKPGGYNLIVA  134 (198)
T ss_dssp             CG--------------GGSCT----------THHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ee--------------ecCCH----------HHHHHHHHHHHHHcCCCcEEEEEE
Confidence            43              22221          123478999999999999998864

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.54  E-value=2.1e-14  Score=131.15  Aligned_cols=122  Identities=19%  Similarity=0.223  Sum_probs=92.7

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|..+..+++.  ...+|+|||+|+.+++.|++++...+...++.++++|+........++||+|+|+-
T Consensus        24 ~~~~VLDlGCG~G~~~~~~~~~--~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~  101 (252)
T d1ri5a_          24 RGDSVLDLGCGKGGDLLKYERA--GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF  101 (252)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHH--TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred             CcCEEEEecccCcHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcc
Confidence            4679999999999999999886  44689999999999999999988888777899999998654333357899999941


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHh
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLE  343 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~  343 (371)
                                    +..|-+        +..+....+++.+.++|||||++++.+..   .+.+...+.
T Consensus       102 --------------~l~~~~--------~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~---~~~i~~~~~  145 (252)
T d1ri5a_         102 --------------SFHYAF--------STSESLDIAQRNIARHLRPGGYFIMTVPS---RDVILERYK  145 (252)
T ss_dssp             --------------CGGGGG--------SSHHHHHHHHHHHHHTEEEEEEEEEEEEC---HHHHHHHHH
T ss_pred             --------------eeeecC--------CCHHHHHHHHHHHhceeCCCCEEEEEecC---HHHHHHHHH
Confidence                          111110        11345668999999999999999998743   344444443

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.53  E-value=5.1e-14  Score=125.29  Aligned_cols=129  Identities=16%  Similarity=0.183  Sum_probs=97.7

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc-cCCCceeEEEEcC
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-DVEGKLSGVVSNP  274 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~-~~~~~fDlIvsNP  274 (371)
                      ...|||+|||+|..++.+|+.. |+..++|+|+++.++..|.++++..++.+ +.++++|+..... ...+.+|.|+.+-
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~-p~~~~iGiD~~~~~i~~a~~~~~~~~l~N-v~~~~~Da~~l~~~~~~~~~d~v~i~f  107 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDSEAQN-VKLLNIDADTLTDVFEPGEVKRVYLNF  107 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHSCCSS-EEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred             CceEEEEEecCcHHHHHHHHhC-CCCcEEEeecchHHHHHHHHHHHHHhccC-chhcccchhhhhcccCchhhhcccccc
Confidence            3489999999999999999985 99999999999999999999999999975 9999999865322 1247899887763


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhc
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLEN  344 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~  344 (371)
                      |-.....         +|..+.-         ....+++.+.+.|||||.|++-++.....+.+.+.+.+
T Consensus       108 p~P~~k~---------~h~k~Rl---------~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~~~~~~  159 (204)
T d2fcaa1         108 SDPWPKK---------RHEKRRL---------TYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSE  159 (204)
T ss_dssp             CCCCCSG---------GGGGGST---------TSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHH
T ss_pred             ccccchh---------hhcchhh---------hHHHHHHHHHHhCCCCcEEEEEECChHHHHHHHHHHHH
Confidence            3221111         1111100         01268889999999999999998655666777777775

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.53  E-value=5.7e-14  Score=130.85  Aligned_cols=108  Identities=13%  Similarity=0.116  Sum_probs=89.5

Q ss_pred             CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEE
Q 017476          192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV  271 (371)
Q Consensus       192 ~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIv  271 (371)
                      ...++.+|||+|||+|.++..+++..  +.+|+|+|+|+++++.|+++++..++.+++.+...|..+.    .++||.|+
T Consensus        49 ~l~~g~~VLDiGCG~G~~a~~~a~~~--g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~----~~~fD~i~  122 (280)
T d2fk8a1          49 DLKPGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF----AEPVDRIV  122 (280)
T ss_dssp             CCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC----CCCCSEEE
T ss_pred             CCCCCCEEEEecCCchHHHHHHHHhC--ceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh----ccchhhhh
Confidence            55678899999999999999999875  5799999999999999999999999988899999887542    46899999


Q ss_pred             EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      |              -++..|-+          ...+..+++.+.+.|||||.+++..
T Consensus       123 s--------------i~~~eh~~----------~~~~~~~f~~i~~~LkpgG~~~i~~  156 (280)
T d2fk8a1         123 S--------------IEAFEHFG----------HENYDDFFKRCFNIMPADGRMTVQS  156 (280)
T ss_dssp             E--------------ESCGGGTC----------GGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             H--------------hhHHHHhh----------hhhHHHHHHHHHhccCCCceEEEEE
Confidence            8              22223321          1335689999999999999999965

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=3.6e-13  Score=129.02  Aligned_cols=165  Identities=18%  Similarity=0.234  Sum_probs=125.4

Q ss_pred             CceeeEeecccc---cceeeEeeCCcccc--cchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCc
Q 017476          147 KPFQYLVGCEHW---RDLVLSVEEGVFIP--RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKG  221 (371)
Q Consensus       147 ~P~~yi~g~~~f---~~~~~~v~~~vliP--rp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~  221 (371)
                      ..+..+.|...|   .++.|.++|+.|+.  ....+.+++.+.+++    ...++.+|||+.||+|.+++.+|+.   ..
T Consensus       163 ~~~~~~~g~~~~~~~~g~~~~i~p~sFfQ~N~~~~e~l~~~v~~~~----~~~~~~~vlDLycG~G~fsl~La~~---~~  235 (358)
T d1uwva2         163 EILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWL----DVQPEDRVLDLFCGMGNFTLPLATQ---AA  235 (358)
T ss_dssp             SCCEEEECCCCEEEETTEEEECCSSSCCCSBHHHHHHHHHHHHHHH----TCCTTCEEEEESCTTTTTHHHHHTT---SS
T ss_pred             eeEEeecCCceEEecCCEEEEECCchhhccchhhhhHHHHHHHHhh----ccCCCceEEEecccccccchhcccc---cc
Confidence            344555564433   46889999999995  366789999999887    3334679999999999999999985   47


Q ss_pred             EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccC---CCceeEEEEcCCCCCCCCcccchhhhcccCccccc
Q 017476          222 SIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV---EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLAL  298 (371)
Q Consensus       222 ~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~---~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL  298 (371)
                      +|+|||+++.+++.|++|++.+|+.+ ++|+.+|..+.+...   ...+|+||.|||=-                     
T Consensus       236 ~V~gvE~~~~ai~~A~~na~~n~i~n-~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~---------------------  293 (358)
T d1uwva2         236 SVVGVEGVPALVEKGQQNARLNGLQN-VTFYHENLEEDVTKQPWAKNGFDKVLLDPARA---------------------  293 (358)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCTTSCCSSSGGGTTCCSEEEECCCTT---------------------
T ss_pred             EEEeccCcHHHHHHHHHhHHhccccc-ceeeecchhhhhhhhhhhhccCceEEeCCCCc---------------------
Confidence            99999999999999999999999975 999999987755432   46799999999942                     


Q ss_pred             cCCCCcH-HHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEE
Q 017476          299 DGGVDGL-DYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVS  354 (371)
Q Consensus       299 ~gg~dGl-~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~  354 (371)
                           |+ +.+..+++     ++|.-++|+.++...++..+..+++    .||.-.+
T Consensus       294 -----G~~~~~~~l~~-----~~~~~ivYVSCnp~TlaRDl~~l~~----~gy~l~~  336 (358)
T d1uwva2         294 -----GAAGVMQQIIK-----LEPIRIVYVSCNPATLARDSEALLK----AGYTIAR  336 (358)
T ss_dssp             -----CCHHHHHHHHH-----HCCSEEEEEESCHHHHHHHHHHHHH----TTCEEEE
T ss_pred             -----cHHHHHHHHHH-----cCCCEEEEEeCCHHHHHHHHHHHHH----CCCeEeE
Confidence                 11 12333432     3677788999977777777777766    5685433

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=8.4e-14  Score=125.38  Aligned_cols=136  Identities=11%  Similarity=-0.017  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC------------
Q 017476          177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG------------  244 (371)
Q Consensus       177 e~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~g------------  244 (371)
                      ..+++.+.+.+    ...++.+|||+|||+|..++.||+.   +.+|+|||+|+.|++.|+++.....            
T Consensus        31 ~~l~~~~~~~l----~~~~~~rvLd~GCG~G~~a~~LA~~---G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~  103 (229)
T d2bzga1          31 QLLKKHLDTFL----KGKSGLRVFFPLCGKAVEMKWFADR---GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTK  103 (229)
T ss_dssp             HHHHHHHHHHH----TTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCE
T ss_pred             HHHHHHHHHhc----CCCCCCEEEEeCCCCcHHHHHHHhC---CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccc
Confidence            35566655554    2345679999999999999999984   6799999999999999988754321            


Q ss_pred             ----CCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccc
Q 017476          245 ----LQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLK  320 (371)
Q Consensus       245 ----l~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~Lk  320 (371)
                          ...+++++++|+++......+.||+|+..      ..+..+.++.                  ...+++.+.++||
T Consensus       104 ~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~------~~l~~~~~~~------------------r~~~~~~~~~~Lk  159 (229)
T d2bzga1         104 VFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDR------GALVAINPGD------------------RKCYADTMFSLLG  159 (229)
T ss_dssp             EEEETTSSEEEEESCGGGGGGSCCCCEEEEEES------SSTTTSCGGG------------------HHHHHHHHHHTEE
T ss_pred             eeeecCCcEEEEEcchhhccccccCceeEEEEE------EEEEeccchh------------------hHHHHHHHHhhcC
Confidence                12358999999987655556789999972      2222232222                  3367888899999


Q ss_pred             cCcEEEEEECCc-----------CcHHHHHHHHh
Q 017476          321 PGGFFAFETNGE-----------KQCKFLKNYLE  343 (371)
Q Consensus       321 pgG~lvle~~~~-----------~q~~~v~~~l~  343 (371)
                      |||.+++++...           -..+++++++.
T Consensus       160 pgG~~~l~~~~~~~~~~~gpp~~~~~~el~~lf~  193 (229)
T d2bzga1         160 KKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLFG  193 (229)
T ss_dssp             EEEEEEEEEEECCTTTCCCSSCCCCHHHHHHHHT
T ss_pred             CcceEEEEEcccCCCCCCCCCCCCCHHHHHHHhc
Confidence            999988876321           24567888886

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.51  E-value=2e-13  Score=123.34  Aligned_cols=159  Identities=13%  Similarity=0.094  Sum_probs=108.6

Q ss_pred             HHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccc
Q 017476          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG  258 (371)
Q Consensus       179 lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~  258 (371)
                      +...++..+ ......++.+|||+|||+|..+..+|+..+++++|+|||+++.+++.|+++++..+   ++..+..|...
T Consensus        58 laa~i~~~l-~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~---~~~~i~~d~~~  133 (227)
T d1g8aa_          58 LGAAIMNGL-KNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR---NIVPILGDATK  133 (227)
T ss_dssp             HHHHHHTTC-CCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT---TEEEEECCTTC
T ss_pred             HHHHHHccc-cccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC---CceEEEEECCC
Confidence            344444433 33345678899999999999999999998889999999999999999999886543   37778888754


Q ss_pred             ccc--cCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC-----C
Q 017476          259 KLK--DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN-----G  331 (371)
Q Consensus       259 ~l~--~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~-----~  331 (371)
                      +..  .....+|+|+++.|+..                            ....+++++.+.|||||++++.+.     .
T Consensus       134 ~~~~~~~~~~vD~i~~d~~~~~----------------------------~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~  185 (227)
T d1g8aa_         134 PEEYRALVPKVDVIFEDVAQPT----------------------------QAKILIDNAEVYLKRGGYGMIAVKSRSIDV  185 (227)
T ss_dssp             GGGGTTTCCCEEEEEECCCSTT----------------------------HHHHHHHHHHHHEEEEEEEEEEEEGGGTCT
T ss_pred             cccccccccceEEEEEEccccc----------------------------hHHHHHHHHHHhcccCCeEEEEEECCccCC
Confidence            322  22468999999766431                            233688899999999999998652     1


Q ss_pred             cCcHHHHHHHHhccccCCceeEEEEecCCCC---ceEEEEEe
Q 017476          332 EKQCKFLKNYLENDSACSFCNVSIVSDFAGI---QRFVTGFR  370 (371)
Q Consensus       332 ~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~---~R~~~a~~  370 (371)
                      ....+.+.+..++....+|.-++... +.+.   -..++++|
T Consensus       186 ~~~~~~v~~~v~~l~~~gf~iie~i~-L~p~~~~H~~vv~rK  226 (227)
T d1g8aa_         186 TKEPEQVFREVERELSEYFEVIERLN-LEPYEKDHALFVVRK  226 (227)
T ss_dssp             TSCHHHHHHHHHHHHHTTSEEEEEEE-CTTTSSSEEEEEEEC
T ss_pred             CCCHHHHHHHHHHHHHcCCEEEEEEc-CCCCCCceEEEEEEe
Confidence            11223333222222236798777653 4332   24566665

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.51  E-value=2.1e-13  Score=121.69  Aligned_cols=145  Identities=17%  Similarity=0.084  Sum_probs=100.4

Q ss_pred             CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc--CCCceeE
Q 017476          192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD--VEGKLSG  269 (371)
Q Consensus       192 ~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~--~~~~fDl  269 (371)
                      ...++.+|||+|||+|..+..+++.. ++++|+|||+|+.+++.|+++++..+   ++.++.+|...+...  ....+|+
T Consensus        53 ~lkpg~~VLDlGcG~G~~~~~la~~v-~~g~V~gvDis~~~i~~a~~~a~~~~---ni~~i~~d~~~~~~~~~~~~~vd~  128 (209)
T d1nt2a_          53 KLRGDERVLYLGAASGTTVSHLADIV-DEGIIYAVEYSAKPFEKLLELVRERN---NIIPLLFDASKPWKYSGIVEKVDL  128 (209)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHT-TTSEEEEECCCHHHHHHHHHHHHHCS---SEEEECSCTTCGGGTTTTCCCEEE
T ss_pred             CCCCCCEEEEeCCcCCHHHHHHHHhc-cCCeEEEEeCCHHHHHHHHHHhhccC---CceEEEeeccCccccccccceEEE
Confidence            45567899999999999999999986 67899999999999999999988764   599999998664321  1346777


Q ss_pred             EEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC-----CcCcHHHH-HHHHh
Q 017476          270 VVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN-----GEKQCKFL-KNYLE  343 (371)
Q Consensus       270 IvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~-----~~~q~~~v-~~~l~  343 (371)
                      |+++.+..                            .....++.++.+.|||||.+++...     .......+ ....+
T Consensus       129 v~~~~~~~----------------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~~  180 (209)
T d1nt2a_         129 IYQDIAQK----------------------------NQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLK  180 (209)
T ss_dssp             EEECCCST----------------------------THHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHH
T ss_pred             EEecccCh----------------------------hhHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHHHHHHHH
Confidence            77764432                            1233678899999999999988651     11122222 22222


Q ss_pred             ccccCCceeEEEEecCCCCce---EEEEEe
Q 017476          344 NDSACSFCNVSIVSDFAGIQR---FVTGFR  370 (371)
Q Consensus       344 ~~~~~gf~~v~~~~Dl~g~~R---~~~a~~  370 (371)
                      .. ..||.-++.. ++.+.+|   ++.++|
T Consensus       181 ~l-~~gf~i~E~i-~L~P~~~~H~~v~~~r  208 (209)
T d1nt2a_         181 EM-EGDFKIVKHG-SLMPYHRDHIFIHAYR  208 (209)
T ss_dssp             HH-HTTSEEEEEE-ECTTTCTTEEEEEEEE
T ss_pred             HH-HcCCEEEEEE-ccCCCccCcEEEEEEe
Confidence            11 2679776654 4555443   555655

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.51  E-value=2.2e-14  Score=124.25  Aligned_cols=111  Identities=11%  Similarity=-0.026  Sum_probs=83.6

Q ss_pred             CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC-----------CCcEEEEEcCccccc
Q 017476          192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGL-----------QDIIEIRQGSWFGKL  260 (371)
Q Consensus       192 ~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl-----------~~~v~~~~gD~~~~l  260 (371)
                      ...++.+|||+|||+|..++.||++   +.+|+|+|+|+.|++.|++++...+.           ...+.++++|+.+..
T Consensus        17 ~~~~~~rvLd~GCG~G~~a~~la~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~   93 (201)
T d1pjza_          17 NVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALT   93 (201)
T ss_dssp             CCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSST
T ss_pred             CCCCCCEEEEecCcCCHHHHHHHHc---CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccc
Confidence            3456789999999999999999986   58999999999999999998854432           123578888887754


Q ss_pred             ccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          261 KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       261 ~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      ......||+|++.=              +..|-+          .+....+++.+.++|||||.+++..
T Consensus        94 ~~~~~~~D~i~~~~--------------~l~~l~----------~~~~~~~~~~i~~~LkpgG~l~l~~  138 (201)
T d1pjza_          94 ARDIGHCAAFYDRA--------------AMIALP----------ADMRERYVQHLEALMPQACSGLLIT  138 (201)
T ss_dssp             HHHHHSEEEEEEES--------------CGGGSC----------HHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred             cccccceeEEEEEe--------------eeEecc----------hhhhHHHHHHHHHhcCCCcEEEEEE
Confidence            33346899999821              111111          2345678899999999999988765

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.51  E-value=3.2e-14  Score=132.35  Aligned_cols=106  Identities=15%  Similarity=0.070  Sum_probs=85.0

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      .++.+|||+|||+|.++..+++.++.+.+|+|+|+|+.+++.|++|+...+.  +++|+++|+.+. + ..++||+|+|+
T Consensus        26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~--~~~f~~~d~~~~-~-~~~~fD~v~~~  101 (281)
T d2gh1a1          26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEI-E-LNDKYDIAICH  101 (281)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS--EEEEEESCTTTC-C-CSSCEEEEEEE
T ss_pred             CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc--cccccccccccc-c-ccCCceEEEEe
Confidence            4577999999999999999998764467999999999999999999987765  499999998763 2 24689999995


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      -              +..|-+            ....+++++.+.|||||.+++..
T Consensus       102 ~--------------~l~~~~------------d~~~~l~~~~~~LkpgG~lii~~  131 (281)
T d2gh1a1         102 A--------------FLLHMT------------TPETMLQKMIHSVKKGGKIICFE  131 (281)
T ss_dssp             S--------------CGGGCS------------SHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             h--------------hhhcCC------------CHHHHHHHHHHHcCcCcEEEEEE
Confidence            2              222221            23478899999999999988755

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.50  E-value=4.6e-14  Score=126.30  Aligned_cols=90  Identities=18%  Similarity=0.286  Sum_probs=75.2

Q ss_pred             HHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcc
Q 017476          178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF  257 (371)
Q Consensus       178 ~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~  257 (371)
                      .++..+++.+    +..++.+|||+|||+|.++..+|+.+++.++|+++|+++++++.|++|++..++.+ +.++++|..
T Consensus        62 ~~~a~~l~~l----~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n-~~~~~~d~~  136 (213)
T d1dl5a1          62 SLMALFMEWV----GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN-VIFVCGDGY  136 (213)
T ss_dssp             HHHHHHHHHT----TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGG
T ss_pred             hhhHHHHHhh----hccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccc-cccccCchH
Confidence            3445555555    44567899999999999999999988778899999999999999999999999875 889999987


Q ss_pred             cccccCCCceeEEEEc
Q 017476          258 GKLKDVEGKLSGVVSN  273 (371)
Q Consensus       258 ~~l~~~~~~fDlIvsN  273 (371)
                      +.... .++||+|+++
T Consensus       137 ~~~~~-~~~fD~I~~~  151 (213)
T d1dl5a1         137 YGVPE-FSPYDVIFVT  151 (213)
T ss_dssp             GCCGG-GCCEEEEEEC
T ss_pred             Hcccc-ccchhhhhhh
Confidence            65443 4689999995

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.50  E-value=2.3e-13  Score=120.96  Aligned_cols=129  Identities=16%  Similarity=0.178  Sum_probs=98.3

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc-CCCceeEEEEcC
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VEGKLSGVVSNP  274 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~-~~~~fDlIvsNP  274 (371)
                      ...|||+|||+|..++.+|+.. |+..++|+|+++.++..|.+++...++++ +.++.+|+.+.... ..+.+|.|++|-
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~-p~~~~iGid~~~~~v~~a~~~~~~~~l~N-i~~~~~da~~l~~~~~~~~~~~i~i~f  109 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVGVPN-IKLLWVDGSDLTDYFEDGEIDRLYLNF  109 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCCSS-EEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred             CCeEEEEeccCCHHHHHHHHHC-CCCceEEEeccHHHHHHHHHhhhhhcccc-ceeeecCHHHHhhhccCCceehhcccc
Confidence            3489999999999999999985 99999999999999999999999999976 99999998663322 247899998886


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhc
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLEN  344 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~  344 (371)
                      |-......+        +.-++.          ...+++.+.+.|||||.+++.++.....+.+...+.+
T Consensus       110 PdPw~K~~h--------~krRl~----------~~~~l~~~~~~LkpgG~l~i~TD~~~Y~~~~le~~~~  161 (204)
T d1yzha1         110 SDPWPKKRH--------EKRRLT----------YKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQ  161 (204)
T ss_dssp             CCCCCSGGG--------GGGSTT----------SHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             cccccchhh--------hhhhhh----------HHHHHHHHHHhCCCCcEEEEEECCccHHHHHHHHHHH
Confidence            644332211        111110          1368888999999999999998655555556666654

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.50  E-value=2.6e-14  Score=126.43  Aligned_cols=75  Identities=25%  Similarity=0.350  Sum_probs=62.2

Q ss_pred             CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEE
Q 017476          192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV  271 (371)
Q Consensus       192 ~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIv  271 (371)
                      ....+++|||+|||+|.+++.++..  ...+|+|||+++.+++.|++|+.      +++++++|+.+    ..++||+||
T Consensus        45 ~dl~Gk~VLDlGcGtG~l~i~a~~~--ga~~V~~vDid~~a~~~ar~N~~------~~~~~~~D~~~----l~~~fD~Vi  112 (197)
T d1ne2a_          45 GNIGGRSVIDAGTGNGILACGSYLL--GAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSE----ISGKYDTWI  112 (197)
T ss_dssp             TSSBTSEEEEETCTTCHHHHHHHHT--TBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGG----CCCCEEEEE
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHHHc--CCCcccccccCHHHHHHHHHccc------cccEEEEehhh----cCCcceEEE
Confidence            3456889999999999999988874  44689999999999999999963      47899999854    247899999


Q ss_pred             EcCCCCC
Q 017476          272 SNPPYIP  278 (371)
Q Consensus       272 sNPPYi~  278 (371)
                      +||||..
T Consensus       113 ~NPPfg~  119 (197)
T d1ne2a_         113 MNPPFGS  119 (197)
T ss_dssp             ECCCC--
T ss_pred             eCcccch
Confidence            9999953

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.49  E-value=1.3e-13  Score=124.93  Aligned_cols=156  Identities=17%  Similarity=0.104  Sum_probs=105.4

Q ss_pred             HHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcc
Q 017476          178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF  257 (371)
Q Consensus       178 ~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~  257 (371)
                      .|...+...+ ......++.+|||+|||+|..+..+|+.. +++.|+|||+|+.+++.|++++...+   ++.++.+|..
T Consensus        58 klaA~i~~gl-~~l~ikpG~~VLDlGcGsG~~~~~la~~~-~~g~V~aVDiS~~~i~~a~~~a~~~~---ni~~i~~d~~  132 (230)
T d1g8sa_          58 KLAAAIIKGL-KVMPIKRDSKILYLGASAGTTPSHVADIA-DKGIVYAIEYAPRIMRELLDACAERE---NIIPILGDAN  132 (230)
T ss_dssp             HHHHHHHTTC-CCCCCCTTCEEEEESCCSSHHHHHHHHHT-TTSEEEEEESCHHHHHHHHHHTTTCT---TEEEEECCTT
T ss_pred             HHHHHHHhhH-HhCCCCCCCEEEEeCEEcCHHHHHHHHhC-CCCEEEEEeCcHHHHHHHHHHHhhhc---ccceEEEeec
Confidence            4444444433 33345567899999999999999999974 88899999999999999998876543   4788888887


Q ss_pred             cccccCCCceeE--EEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC-----
Q 017476          258 GKLKDVEGKLSG--VVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN-----  330 (371)
Q Consensus       258 ~~l~~~~~~fDl--IvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~-----  330 (371)
                      .+.......+|+  ++++-.+                            .+....++.++.+.|||||.+++...     
T Consensus       133 ~~~~~~~~~~~v~~i~~~~~~----------------------------~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d  184 (230)
T d1g8sa_         133 KPQEYANIVEKVDVIYEDVAQ----------------------------PNQAEILIKNAKWFLKKGGYGMIAIKARSID  184 (230)
T ss_dssp             CGGGGTTTCCCEEEEEECCCS----------------------------TTHHHHHHHHHHHHEEEEEEEEEEEEGGGTC
T ss_pred             cCcccccccceeEEeeccccc----------------------------hHHHHHHHHHHHHhcccCceEEEEeeccccC
Confidence            655433344554  4432111                            12234678899999999999988642     


Q ss_pred             Cc----CcHHHHHHHHhccccCCceeEEEEecCCCCce---EEEEEe
Q 017476          331 GE----KQCKFLKNYLENDSACSFCNVSIVSDFAGIQR---FVTGFR  370 (371)
Q Consensus       331 ~~----~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R---~~~a~~  370 (371)
                      ..    ...+++.+.|++   .||..++.. |+.+.+|   .++|..
T Consensus       185 ~~~~~~~~~~e~~~~L~~---aGF~ive~i-dL~py~~~H~~vvg~y  227 (230)
T d1g8sa_         185 VTKDPKEIFKEQKEILEA---GGFKIVDEV-DIEPFEKDHVMFVGIW  227 (230)
T ss_dssp             SSSCHHHHHHHHHHHHHH---HTEEEEEEE-ECTTTSTTEEEEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHH---cCCEEEEEe-cCCCCcCCeEEEEEEe
Confidence            11    112344556664   689777665 6766655   455543

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=99.49  E-value=7.6e-14  Score=124.04  Aligned_cols=156  Identities=19%  Similarity=0.251  Sum_probs=105.4

Q ss_pred             cccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCc
Q 017476          169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDI  248 (371)
Q Consensus       169 vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~  248 (371)
                      |+.|++.+++|++.+        ...++.+|||+|||+|.++..+.+.......++|+|+++.++..+          .+
T Consensus         1 v~TP~~i~~~m~~l~--------~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~----------~~   62 (223)
T d2ih2a1           1 VETPPEVVDFMVSLA--------EAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PW   62 (223)
T ss_dssp             CCCCHHHHHHHHHHC--------CCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TT
T ss_pred             CCCCHHHHHHHHHhc--------CCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc----------cc
Confidence            567877666666643        223467999999999999999987765667899999999765432          34


Q ss_pred             EEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccC--cc-ccccCCCCcHHHHHHHHHHHhcccccCcEE
Q 017476          249 IEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHE--PR-LALDGGVDGLDYLLHLCNGTASMLKPGGFF  325 (371)
Q Consensus       249 v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~e--p~-~aL~gg~dGl~~~~~il~~a~~~LkpgG~l  325 (371)
                      ..++++|.+....  ..+||+|++||||.................  .. .......+..+.+..+++.+.+.|++||++
T Consensus        63 ~~~~~~~~~~~~~--~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~  140 (223)
T d2ih2a1          63 AEGILADFLLWEP--GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVL  140 (223)
T ss_dssp             EEEEESCGGGCCC--SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEE
T ss_pred             ceeeeeehhcccc--ccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCce
Confidence            6888999877544  368999999999976443222111110000  00 011122233456678899999999999999


Q ss_pred             EEEECC----cCcHHHHHHHHhc
Q 017476          326 AFETNG----EKQCKFLKNYLEN  344 (371)
Q Consensus       326 vle~~~----~~q~~~v~~~l~~  344 (371)
                      ++.++.    ....+.+++.+.+
T Consensus       141 ~~I~p~~~l~~~~~~~lR~~l~~  163 (223)
T d2ih2a1         141 VFVVPATWLVLEDFALLREFLAR  163 (223)
T ss_dssp             EEEEEGGGGTCGGGHHHHHHHHH
T ss_pred             EEEEeeeeccCcchHHHHHHHHh
Confidence            998742    2356678877775

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.48  E-value=6.8e-13  Score=121.71  Aligned_cols=132  Identities=19%  Similarity=0.163  Sum_probs=103.0

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ...+|||+|||+|.++..+++++ |+.+++++|+ +++++.|++++...++.+++.++.+|.+++.+   ..||+|++. 
T Consensus        81 ~~~~vlDvG~G~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p---~~~D~v~~~-  154 (256)
T d1qzza2          81 AVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLP---VTADVVLLS-  154 (256)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS---CCEEEEEEE-
T ss_pred             cCCEEEEECCCCCHHHHHHHHhh-cCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeecccccc---ccchhhhcc-
Confidence            45689999999999999999996 8999999998 78999999999999999999999999987654   469999983 


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC-----------------------
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG-----------------------  331 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~-----------------------  331 (371)
                                   .+..+-+          -+....+++++.+.|||||++++...-                       
T Consensus       155 -------------~vLh~~~----------d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~  211 (256)
T d1qzza2         155 -------------FVLLNWS----------DEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFM  211 (256)
T ss_dssp             -------------SCGGGSC----------HHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHH
T ss_pred             -------------ccccccC----------cHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhC
Confidence                         1211111          133457899999999999988874210                       


Q ss_pred             ---cCcHHHHHHHHhccccCCceeEEEEec
Q 017476          332 ---EKQCKFLKNYLENDSACSFCNVSIVSD  358 (371)
Q Consensus       332 ---~~q~~~v~~~l~~~~~~gf~~v~~~~D  358 (371)
                         ....+++++++++   +||+.+++...
T Consensus       212 ~g~~rt~~e~~~ll~~---AGf~~~~~~~~  238 (256)
T d1qzza2         212 GGRVRTRDEVVDLAGS---AGLALASERTS  238 (256)
T ss_dssp             SCCCCCHHHHHHHHHT---TTEEEEEEEEE
T ss_pred             CCccCCHHHHHHHHHH---CCCceeEEEEe
Confidence               1134567778875   89988887653

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.48  E-value=2.4e-13  Score=126.91  Aligned_cols=108  Identities=14%  Similarity=0.100  Sum_probs=89.4

Q ss_pred             CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEE
Q 017476          192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV  271 (371)
Q Consensus       192 ~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIv  271 (371)
                      ...++.+|||+|||.|.+++.+|+..  +++|+|+++|++.++.|+++++..|+.+++++..+|+.+.    +++||.|+
T Consensus        59 ~l~~G~~VLDiGCG~G~~a~~~a~~~--g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~----~~~fD~i~  132 (285)
T d1kpga_          59 GLQPGMTLLDVGCGWGATMMRAVEKY--DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF----DEPVDRIV  132 (285)
T ss_dssp             TCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC----CCCCSEEE
T ss_pred             CCCCCCEEEEecCcchHHHHHHHhcC--CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc----ccccccee
Confidence            55678899999999999999999986  5899999999999999999999999999999999998542    36899999


Q ss_pred             EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      |-              +...|-          |...+..+++.+.++|||||.+++..
T Consensus       133 si--------------~~~eh~----------~~~~~~~~~~~~~r~LkpgG~~~l~~  166 (285)
T d1kpga_         133 SI--------------GAFEHF----------GHERYDAFFSLAHRLLPADGVMLLHT  166 (285)
T ss_dssp             EE--------------SCGGGT----------CTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             ee--------------hhhhhc----------CchhHHHHHHHHHhhcCCCCcEEEEE
Confidence            81              111221          11335578999999999999999855

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.46  E-value=2.4e-13  Score=121.92  Aligned_cols=100  Identities=18%  Similarity=0.146  Sum_probs=77.4

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++++|||+|||+|.++..+++.   +.+|+|||+|+++++.|+++.     .+++.++++|+.+...  +++||+|++. 
T Consensus        20 ~~~~VLDiGcG~G~~~~~l~~~---g~~v~giD~s~~~i~~a~~~~-----~~~~~~~~~~~~~~~~--~~~fD~I~~~-   88 (225)
T d2p7ia1          20 RPGNLLELGSFKGDFTSRLQEH---FNDITCVEASEEAISHAQGRL-----KDGITYIHSRFEDAQL--PRRYDNIVLT-   88 (225)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTT---CSCEEEEESCHHHHHHHHHHS-----CSCEEEEESCGGGCCC--SSCEEEEEEE-
T ss_pred             CCCcEEEEeCCCcHHHHHHHHc---CCeEEEEeCcHHHhhhhhccc-----cccccccccccccccc--cccccccccc-
Confidence            4679999999999999999875   468999999999999998763     2459999999865432  4789999993 


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHh-cccccCcEEEEEEC
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTA-SMLKPGGFFAFETN  330 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~-~~LkpgG~lvle~~  330 (371)
                                   ++..|-+            ....++..+. ++|+|||++++.++
T Consensus        89 -------------~vleh~~------------d~~~~l~~i~~~~Lk~gG~l~i~~p  120 (225)
T d2p7ia1          89 -------------HVLEHID------------DPVALLKRINDDWLAEGGRLFLVCP  120 (225)
T ss_dssp             -------------SCGGGCS------------SHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             -------------ceeEecC------------CHHHHHHHHHHHhcCCCceEEEEeC
Confidence                         2333321            2335667776 78999999999873

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.4e-13  Score=122.55  Aligned_cols=136  Identities=19%  Similarity=0.245  Sum_probs=100.0

Q ss_pred             cccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 017476          157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA  236 (371)
Q Consensus       157 ~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A  236 (371)
                      .|.+..+.+..+..+..|-   ++-.+++.+ . ....++.+|||+|||+|..+..+|+..++.++|+++|+++++++.|
T Consensus        43 aY~D~~l~i~~~~~is~P~---~~a~~le~L-~-~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a  117 (224)
T d1i1na_          43 PYMDSPQSIGFQATISAPH---MHAYALELL-F-DQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDS  117 (224)
T ss_dssp             TTSSSCEEEETTEEECCHH---HHHHHHHHT-T-TTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHH
T ss_pred             cCCCCCccccchhhhhhhH---HHHHHHHHH-h-hccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHH
Confidence            4566777777777776653   333444443 1 1234577999999999999999999877788999999999999999


Q ss_pred             HHHHHHcCCC----CcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHH
Q 017476          237 AFNAQRYGLQ----DIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLC  312 (371)
Q Consensus       237 ~~n~~~~gl~----~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il  312 (371)
                      ++|+++.++.    +++.++.+|....... .+.||.|+++.-.              .+-|                  
T Consensus       118 ~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~-~~~fD~I~~~~~~--------------~~ip------------------  164 (224)
T d1i1na_         118 VNNVRKDDPTLLSSGRVQLVVGDGRMGYAE-EAPYDAIHVGAAA--------------PVVP------------------  164 (224)
T ss_dssp             HHHHHHHCTHHHHTSSEEEEESCGGGCCGG-GCCEEEEEECSBB--------------SSCC------------------
T ss_pred             HHhccccCcccccccceEEEEeecccccch-hhhhhhhhhhcch--------------hhcC------------------
Confidence            9999887652    4589999998765443 4689999985211              1111                  


Q ss_pred             HHHhcccccCcEEEEEEC
Q 017476          313 NGTASMLKPGGFFAFETN  330 (371)
Q Consensus       313 ~~a~~~LkpgG~lvle~~  330 (371)
                      +...+.|||||++++-++
T Consensus       165 ~~l~~~LkpGG~LV~pv~  182 (224)
T d1i1na_         165 QALIDQLKPGGRLILPVG  182 (224)
T ss_dssp             HHHHHTEEEEEEEEEEES
T ss_pred             HHHHhhcCCCcEEEEEEc
Confidence            123478999999999874

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=8.8e-14  Score=128.52  Aligned_cols=108  Identities=20%  Similarity=0.264  Sum_probs=85.2

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|||+|||+|.++..+++.+ ++.+++|+|+|+.+++.|+++.      .++.++++|+.+ ++..++.||+|+++ 
T Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~~giD~s~~~~~~a~~~~------~~~~~~~~d~~~-l~~~~~sfD~v~~~-  154 (268)
T d1p91a_          84 KATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHR-LPFSDTSMDAIIRI-  154 (268)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTS-CSBCTTCEEEEEEE-
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHC-CCCEEEEecchHhhhhhhhccc------ccccceeeehhh-ccCCCCCEEEEeec-
Confidence            56799999999999999999975 7889999999999999998752      248999999865 44446899999984 


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHh
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLE  343 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~  343 (371)
                                       +.|.               .++++.++|||||++++.+.+.+...+++..+.
T Consensus       155 -----------------~~~~---------------~~~e~~rvLkpgG~l~~~~p~~~~l~el~~~~~  191 (268)
T d1p91a_         155 -----------------YAPC---------------KAEELARVVKPGGWVITATPGPRHLMELKGLIY  191 (268)
T ss_dssp             -----------------SCCC---------------CHHHHHHHEEEEEEEEEEEECTTTTHHHHTTTC
T ss_pred             -----------------CCHH---------------HHHHHHHHhCCCcEEEEEeeCCcchHHHHHHhh
Confidence                             1111               134567899999999999977766666665543

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=2.1e-13  Score=127.10  Aligned_cols=114  Identities=18%  Similarity=0.173  Sum_probs=83.0

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC---cEEEEEcCcccccc--cCCCceeEE
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQD---IIEIRQGSWFGKLK--DVEGKLSGV  270 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~---~v~~~~gD~~~~l~--~~~~~fDlI  270 (371)
                      +++|||+|||+|.+++.+++.   +.+|+|||+|+.|++.|+++....+...   +..+...|+.....  ...++||.|
T Consensus        57 ~~~vLD~GcG~G~~~~~la~~---g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v  133 (292)
T d1xvaa_          57 CHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAV  133 (292)
T ss_dssp             CCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEE
T ss_pred             CCEEEEecCCCcHHHHHHHHc---CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEE
Confidence            569999999999999999985   4799999999999999999988776532   24566677643211  124689999


Q ss_pred             EEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC
Q 017476          271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN  330 (371)
Q Consensus       271 vsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~  330 (371)
                      ++-     ..        +..|-|.     .....+..+.+++++.++|||||+|++++.
T Consensus       134 ~~~-----~~--------~~~~~~~-----~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  175 (292)
T d1xvaa_         134 ICL-----GN--------SFAHLPD-----SKGDQSEHRLALKNIASMVRPGGLLVIDHR  175 (292)
T ss_dssp             EEC-----SS--------CGGGSCC-----TTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEe-----cC--------chhhcCC-----cccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence            981     01        1112111     112245677899999999999999999874

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.43  E-value=5.2e-13  Score=122.40  Aligned_cols=132  Identities=13%  Similarity=0.054  Sum_probs=97.4

Q ss_pred             CCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEE
Q 017476          193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS  272 (371)
Q Consensus       193 ~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvs  272 (371)
                      .....+|||+|||+|.++..++...  ..+|++||+|+.+++.|+++....   +.++++++|+.+. ....++||+|++
T Consensus        91 ~~~~~~vLD~GcG~G~~t~~ll~~~--~~~v~~vD~s~~~l~~a~~~~~~~---~~~~~~~~d~~~~-~~~~~~fD~I~~  164 (254)
T d1xtpa_          91 GHGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETA-TLPPNTYDLIVI  164 (254)
T ss_dssp             TCCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGC-CCCSSCEEEEEE
T ss_pred             CCCCCeEEEecccCChhhHHHHhhc--CceEEEEcCCHHHHHhhhcccccc---ccceeEEcccccc-ccCCCccceEEe
Confidence            3356799999999999999888764  358999999999999999876433   3589999998654 333578999999


Q ss_pred             cCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC---------------cCcHHH
Q 017476          273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG---------------EKQCKF  337 (371)
Q Consensus       273 NPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~---------------~~q~~~  337 (371)
                      +-.              ..|-+.          +....+++.+.+.|+|||.+++..+.               ....+.
T Consensus       165 ~~v--------------l~hl~d----------~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~  220 (254)
T d1xtpa_         165 QWT--------------AIYLTD----------ADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIH  220 (254)
T ss_dssp             ESC--------------GGGSCH----------HHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHH
T ss_pred             ecc--------------ccccch----------hhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHH
Confidence            422              223221          23457899999999999999985421               113567


Q ss_pred             HHHHHhccccCCceeEEEEe
Q 017476          338 LKNYLENDSACSFCNVSIVS  357 (371)
Q Consensus       338 v~~~l~~~~~~gf~~v~~~~  357 (371)
                      +.+++++   .||..|+...
T Consensus       221 ~~~l~~~---aGf~ii~~~~  237 (254)
T d1xtpa_         221 YKRLFNE---SGVRVVKEAF  237 (254)
T ss_dssp             HHHHHHH---HTCCEEEEEE
T ss_pred             HHHHHHH---cCCEEEEEEe
Confidence            8888886   6898777654

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.41  E-value=5.9e-13  Score=117.27  Aligned_cols=117  Identities=16%  Similarity=0.159  Sum_probs=87.8

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCC
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP  275 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPP  275 (371)
                      ..+|||+|||+|.++..+       .+++|||+|+.+++.|+++        ++.++++|..+ ++..+++||+|+++  
T Consensus        37 ~~~vLDiGcG~G~~~~~~-------~~~~giD~s~~~~~~a~~~--------~~~~~~~d~~~-l~~~~~~fD~I~~~--   98 (208)
T d1vlma_          37 EGRGVEIGVGTGRFAVPL-------KIKIGVEPSERMAEIARKR--------GVFVLKGTAEN-LPLKDESFDFALMV--   98 (208)
T ss_dssp             SSCEEEETCTTSTTHHHH-------TCCEEEESCHHHHHHHHHT--------TCEEEECBTTB-CCSCTTCEEEEEEE--
T ss_pred             CCeEEEECCCCccccccc-------ceEEEEeCChhhccccccc--------ccccccccccc-cccccccccccccc--
Confidence            458999999999887654       2468999999999999874        38999999865 34445799999993  


Q ss_pred             CCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC-----------------------c
Q 017476          276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG-----------------------E  332 (371)
Q Consensus       276 Yi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~-----------------------~  332 (371)
                                  .+..|-+.            ...+++++.+.|+|||.+++...+                       .
T Consensus        99 ------------~~l~h~~d------------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (208)
T d1vlma_          99 ------------TTICFVDD------------PERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARF  154 (208)
T ss_dssp             ------------SCGGGSSC------------HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCC
T ss_pred             ------------cccccccc------------cccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccC
Confidence                        23333221            347889999999999999986531                       1


Q ss_pred             CcHHHHHHHHhccccCCceeEEEEe
Q 017476          333 KQCKFLKNYLENDSACSFCNVSIVS  357 (371)
Q Consensus       333 ~q~~~v~~~l~~~~~~gf~~v~~~~  357 (371)
                      ...+++.++|++   .||..|++..
T Consensus       155 ~s~~~l~~~l~~---~Gf~~i~v~~  176 (208)
T d1vlma_         155 FSTEELMDLMRK---AGFEEFKVVQ  176 (208)
T ss_dssp             CCHHHHHHHHHH---TTCEEEEEEE
T ss_pred             CCHHHHHHHHHH---cCCeEEEEEE
Confidence            135678888886   7898887765

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.1e-12  Score=118.80  Aligned_cols=135  Identities=15%  Similarity=0.025  Sum_probs=90.2

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCc-------------------------
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDI-------------------------  248 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~-------------------------  248 (371)
                      .++.+|||+|||+|.+++.++..  ...+|+|+|+|+.+++.|++++...+....                         
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~--~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL  127 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHhHHHHhcc--ccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHH
Confidence            35679999999999988777764  235799999999999999999876543210                         


Q ss_pred             ---E-EEEEcCcccc---cccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhccccc
Q 017476          249 ---I-EIRQGSWFGK---LKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKP  321 (371)
Q Consensus       249 ---v-~~~~gD~~~~---l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~Lkp  321 (371)
                         + .....+....   .....++||+|+++              .+..|-+        ...+.+..+++++.++|||
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~--------------~~l~~~~--------~~~~~~~~~l~~i~~~Lkp  185 (257)
T d2a14a1         128 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTL--------------LAMECAC--------CSLDAYRAALCNLASLLKP  185 (257)
T ss_dssp             HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEE--------------SCHHHHC--------SSHHHHHHHHHHHHTTEEE
T ss_pred             hhhhhcccccccccccccccccCCcccEEeeh--------------hhHHHhc--------ccHHHHHHHHHHHHhccCC
Confidence               0 1111111110   01124789999982              1111111        0135677899999999999


Q ss_pred             CcEEEEEEC---------------CcCcHHHHHHHHhccccCCceeEEE
Q 017476          322 GGFFAFETN---------------GEKQCKFLKNYLENDSACSFCNVSI  355 (371)
Q Consensus       322 gG~lvle~~---------------~~~q~~~v~~~l~~~~~~gf~~v~~  355 (371)
                      ||.+++...               ..-..+.++++|++   +||..+++
T Consensus       186 GG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---aGf~v~~~  231 (257)
T d2a14a1         186 GGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLD---AGFDIEQL  231 (257)
T ss_dssp             EEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHH---TTEEEEEE
T ss_pred             CcEEEEEEecccccceeccccccccCCCHHHHHHHHHH---CCCEEEEE
Confidence            999998542               12357889999986   88975554

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.40  E-value=4.4e-13  Score=120.20  Aligned_cols=100  Identities=16%  Similarity=0.133  Sum_probs=76.7

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      .+.+|||+|||+|.++..+++.   +.+|+|+|+|+.+++.|++|.    ..   .++++|+.+ ++..+++||+|+|. 
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~----~~---~~~~~~~~~-l~~~~~~fD~ii~~-  109 (246)
T d2avna1          42 NPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKG----VK---NVVEAKAED-LPFPSGAFEAVLAL-  109 (246)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHT----CS---CEEECCTTS-CCSCTTCEEEEEEC-
T ss_pred             CCCEEEEECCCCchhccccccc---ceEEEEeeccccccccccccc----cc---ccccccccc-cccccccccceeee-
Confidence            4569999999999999999874   579999999999999999863    22   366788755 44445899999982 


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN  330 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~  330 (371)
                                  ..+..|-|.            ...+++++.+.|||||.+++...
T Consensus       110 ------------~~~~~~~~d------------~~~~l~~i~r~Lk~gG~~ii~~~  141 (246)
T d2avna1         110 ------------GDVLSYVEN------------KDKAFSEIRRVLVPDGLLIATVD  141 (246)
T ss_dssp             ------------SSHHHHCSC------------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ------------cchhhhhhh------------HHHHHHHHHhhcCcCcEEEEEEC
Confidence                        122233221            34688899999999999999874

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=4.8e-12  Score=113.11  Aligned_cols=146  Identities=19%  Similarity=0.192  Sum_probs=105.6

Q ss_pred             cchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q 017476          173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIR  252 (371)
Q Consensus       173 rp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~  252 (371)
                      .|+.-.++..+....       ++++|||+|||+|..++.+|+.++++++|+++|+++++++.|++|++..|+.++|+++
T Consensus        41 ~~~~G~lL~~lv~~~-------kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~  113 (214)
T d2cl5a1          41 GDAKGQIMDAVIREY-------SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTIL  113 (214)
T ss_dssp             HHHHHHHHHHHHHHH-------CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEE
T ss_pred             CHHHHHHHHHHHHhh-------CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceee
Confidence            356666666666655       4679999999999999999998766789999999999999999999999999999999


Q ss_pred             EcCcccccccC-----CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEE
Q 017476          253 QGSWFGKLKDV-----EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF  327 (371)
Q Consensus       253 ~gD~~~~l~~~-----~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvl  327 (371)
                      .||..+.++.+     .+.||+|+.+-                .+          +....+ ..+..+.++|+|||++++
T Consensus       114 ~Gd~~e~l~~l~~~~~~~~~D~ifiD~----------------~~----------~~~~~~-~~l~~~~~lLkpGGvIv~  166 (214)
T d2cl5a1         114 NGASQDLIPQLKKKYDVDTLDMVFLDH----------------WK----------DRYLPD-TLLLEKCGLLRKGTVLLA  166 (214)
T ss_dssp             ESCHHHHGGGHHHHSCCCCEEEEEECS----------------CG----------GGHHHH-HHHHHHTTCEEEEEEEEE
T ss_pred             eccccccccchhhcccccccceeeecc----------------cc----------cccccH-HHHHHHhCccCCCcEEEE
Confidence            99997765432     35799999830                00          001111 235567789999998887


Q ss_pred             EECCcCcHHHHHHHHhccccCCceeEE
Q 017476          328 ETNGEKQCKFLKNYLENDSACSFCNVS  354 (371)
Q Consensus       328 e~~~~~q~~~v~~~l~~~~~~gf~~v~  354 (371)
                      .---+.......+.+++.  ..|....
T Consensus       167 Ddvl~~g~~~~~~~vr~~--~~~~~~~  191 (214)
T d2cl5a1         167 DNVIVPGTPDFLAYVRGS--SSFECTH  191 (214)
T ss_dssp             SCCCCCCCHHHHHHHHHC--TTEEEEE
T ss_pred             eCcCCCCChHHHHHHhcc--Cceeehh
Confidence            442233334455666652  4565443

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=5.8e-13  Score=119.99  Aligned_cols=109  Identities=17%  Similarity=0.215  Sum_probs=82.3

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc-CCCceeEEEEc
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VEGKLSGVVSN  273 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~-~~~~fDlIvsN  273 (371)
                      .+++|||+|||+|..+..+++.  ...+|+|||+|+.+++.|++++...+  .++.++.+|+...... ..++||.|+.+
T Consensus        53 ~g~~VLdIGcG~G~~a~~~a~~--~~~~v~~id~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~fD~i~fD  128 (229)
T d1zx0a1          53 KGGRVLEVGFGMAIAASKVQEA--PIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGILYD  128 (229)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTS--CEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCTTCEEEEEEC
T ss_pred             CCCeEEEeeccchHHHHHHHHc--CCCeEEEeCCCHHHHHHHHHHhhhcc--cccccccccccccccccccccccceeec
Confidence            4679999999999999999885  34689999999999999999987654  3588888887543322 24789999986


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE  328 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle  328 (371)
                      +....         ....|            +.....+++.+.++|||||++++.
T Consensus       129 ~~~~~---------~~~~~------------~~~~~~~~~~~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         129 TYPLS---------EETWH------------THQFNFIKNHAFRLLKPGGVLTYC  162 (229)
T ss_dssp             CCCCB---------GGGTT------------THHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             ccccc---------ccccc------------ccCHHHHHHHHHHHcCCCcEEEEE
Confidence            53221         11111            234557889999999999999873

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.37  E-value=4.2e-12  Score=113.56  Aligned_cols=131  Identities=19%  Similarity=0.253  Sum_probs=99.6

Q ss_pred             ccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 017476          158 WRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA  237 (371)
Q Consensus       158 f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~  237 (371)
                      |.+..+.++.+..+..|-+   +..+++.+    +..++.+|||+|||||..+..+|+..  +.+|+++|.+++.++.|+
T Consensus        48 Y~D~~l~i~~g~~is~P~~---~a~ml~~L----~l~~g~~VLeIGsGsGY~taila~l~--g~~V~~ie~~~~l~~~a~  118 (215)
T d1jg1a_          48 HIDEPLPIPAGQTVSAPHM---VAIMLEIA----NLKPGMNILEVGTGSGWNAALISEIV--KTDVYTIERIPELVEFAK  118 (215)
T ss_dssp             TSSSCEECSTTCEECCHHH---HHHHHHHH----TCCTTCCEEEECCTTSHHHHHHHHHH--CSCEEEEESCHHHHHHHH
T ss_pred             cccCCcccchhhhhhhhhh---HHHHHHhh----ccCccceEEEecCCCChhHHHHHHhh--CceeEEEeccHHHHHHHH
Confidence            4466677788888877653   33444444    34467799999999999999999875  467999999999999999


Q ss_pred             HHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhc
Q 017476          238 FNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTAS  317 (371)
Q Consensus       238 ~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~  317 (371)
                      +|+++.++.+ +.++++|..+..+. .+.||.|+++-..              .+.|.              .++    +
T Consensus       119 ~~l~~~g~~n-v~~~~gd~~~g~~~-~~pfD~Iiv~~a~--------------~~ip~--------------~l~----~  164 (215)
T d1jg1a_         119 RNLERAGVKN-VHVILGDGSKGFPP-KAPYDVIIVTAGA--------------PKIPE--------------PLI----E  164 (215)
T ss_dssp             HHHHHTTCCS-EEEEESCGGGCCGG-GCCEEEEEECSBB--------------SSCCH--------------HHH----H
T ss_pred             HHHHHcCCce-eEEEECccccCCcc-cCcceeEEeeccc--------------ccCCH--------------HHH----H
Confidence            9999999865 99999999876554 4789999984211              11121              233    5


Q ss_pred             ccccCcEEEEEECC
Q 017476          318 MLKPGGFFAFETNG  331 (371)
Q Consensus       318 ~LkpgG~lvle~~~  331 (371)
                      .|++||++++-++.
T Consensus       165 qL~~gGrLv~pv~~  178 (215)
T d1jg1a_         165 QLKIGGKLIIPVGS  178 (215)
T ss_dssp             TEEEEEEEEEEECS
T ss_pred             hcCCCCEEEEEEcc
Confidence            79999999998843

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.2e-12  Score=121.26  Aligned_cols=121  Identities=18%  Similarity=0.103  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcC
Q 017476          176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGS  255 (371)
Q Consensus       176 te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD  255 (371)
                      ++.+.+.+.+..    ...++++|||+|||+|.+++.+|+.  ...+|+|+|.|+.+. .|++++..++..+++.++++|
T Consensus        20 ~~~y~~ai~~~~----~~~~~~~VLDiGcG~G~lsl~aa~~--Ga~~V~aid~s~~~~-~a~~~~~~~~~~~~i~~~~~~   92 (311)
T d2fyta1          20 TESYRDFIYQNP----HIFKDKVVLDVGCGTGILSMFAAKA--GAKKVLGVDQSEILY-QAMDIIRLNKLEDTITLIKGK   92 (311)
T ss_dssp             HHHHHHHHHHCG----GGTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEESSTHHH-HHHHHHHHTTCTTTEEEEESC
T ss_pred             HHHHHHHHHhcc----ccCCcCEEEEECCCCCHHHHHHHHc--CCCEEEEEeCHHHHH-HHHHHHHHhCCCccceEEEee
Confidence            445555544332    2345779999999999999999985  346999999999875 577778888888899999999


Q ss_pred             cccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEE
Q 017476          256 WFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF  327 (371)
Q Consensus       256 ~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvl  327 (371)
                      ..+. ....++||+|++++......                       +-..+..++....++|+|||.++-
T Consensus        93 ~~~l-~~~~~~~D~Ivse~~~~~~~-----------------------~e~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1          93 IEEV-HLPVEKVDVIISEWMGYFLL-----------------------FESMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             TTTS-CCSCSCEEEEEECCCBTTBT-----------------------TTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             HHHh-cCccccceEEEEeeeeeecc-----------------------cccccHHHHHHHHhcCCCCcEEec
Confidence            8663 33357999999976542110                       012234566666789999998864

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.34  E-value=1.2e-12  Score=123.52  Aligned_cols=105  Identities=17%  Similarity=0.201  Sum_probs=82.0

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++++|||+|||+|.+++.+|+.  ...+|+|+|.|+. ...|+++++.+++.++++++++|..+. ....++||+|+++.
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~--Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~-~~~~~~~D~ivs~~  108 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKA--GARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEV-ELPVEKVDIIISEW  108 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTC-CCSSSCEEEEEECC
T ss_pred             CcCEEEEEecCCcHHHHHHHHh--CCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHc-ccccceeEEEeeee
Confidence            4679999999999999999885  3458999999985 578889999999999999999999763 33347899999975


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEE
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFA  326 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lv  326 (371)
                      ....           ..+|            ..+..++....++|||||.++
T Consensus       109 ~~~~-----------l~~e------------~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_         109 MGYC-----------LFYE------------SMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             CBBT-----------BTBT------------CCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeee-----------eccH------------HHHHHHHHHHHhcCCCCeEEE
Confidence            4211           0111            124477888889999999886

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.33  E-value=3.1e-12  Score=121.27  Aligned_cols=105  Identities=19%  Similarity=0.185  Sum_probs=81.6

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++++|||+|||+|.+++.+|+.  ...+|+|+|.|+ +++.|+++++.++..++++++++|+.+. ....++||+|++++
T Consensus        38 ~~~~VLDlGcGtG~ls~~aa~~--Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l-~~~~~~~D~i~se~  113 (328)
T d1g6q1_          38 KDKIVLDVGCGTGILSMFAAKH--GAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDV-HLPFPKVDIIISEW  113 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT--CCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTS-CCSSSCEEEEEECC
T ss_pred             CcCEEEEeCCCCCHHHHHHHHh--CCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhc-cCcccceeEEEEEe
Confidence            4679999999999999988885  346999999997 6789999999999999999999998653 33347899999975


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEE
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFA  326 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lv  326 (371)
                      ....           ..++            .....++....++|||||.++
T Consensus       114 ~~~~-----------~~~e------------~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         114 MGYF-----------LLYE------------SMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             CBTT-----------BSTT------------CCHHHHHHHHHHHEEEEEEEE
T ss_pred             ccee-----------eccc------------hhHHHHHHHHHhccCCCeEEE
Confidence            4321           1111            123356777778999999884

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.33  E-value=3.4e-12  Score=112.19  Aligned_cols=143  Identities=19%  Similarity=0.234  Sum_probs=110.0

Q ss_pred             HHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcc
Q 017476          178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF  257 (371)
Q Consensus       178 ~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~  257 (371)
                      .|++.+++++    ...+++.++|++||+|..+..+++.+ ++++|+|+|.+++|++.|+++++.++  +++.++++++.
T Consensus        10 Vll~evi~~l----~~~~~~~~lD~t~G~Gghs~~il~~~-~~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f~   82 (192)
T d1m6ya2          10 VMVREVIEFL----KPEDEKIILDCTVGEGGHSRAILEHC-PGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYR   82 (192)
T ss_dssp             TTHHHHHHHH----CCCTTCEEEETTCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGG
T ss_pred             hHHHHHHHhh----CCCCCCEEEEecCCCcHHHHHHHhcC-CCCeEEEeechHHHHHHHHHhhcccc--ccccchhHHHh
Confidence            3566667776    34467899999999999999999987 78999999999999999999987765  56999999875


Q ss_pred             ccc---c-cCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcC
Q 017476          258 GKL---K-DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEK  333 (371)
Q Consensus       258 ~~l---~-~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~  333 (371)
                      +..   . ...++||.|+.+..+..      .           -++....|+......+..+.+.|++||.+++..-...
T Consensus        83 ~~~~~~~~~~~~~vdgIl~DlGvSs------~-----------Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~  145 (192)
T d1m6ya2          83 EADFLLKTLGIEKVDGILMDLGVST------Y-----------QLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSL  145 (192)
T ss_dssp             GHHHHHHHTTCSCEEEEEEECSCCH------H-----------HHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHH
T ss_pred             hHHHHHHHcCCCCcceeeeccchhH------h-----------hhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccH
Confidence            421   1 11368999999766521      0           1234456789999999999999999999998874333


Q ss_pred             cHHHHHHHHhc
Q 017476          334 QCKFLKNYLEN  344 (371)
Q Consensus       334 q~~~v~~~l~~  344 (371)
                      ....|.+++++
T Consensus       146 Edr~vk~~f~~  156 (192)
T d1m6ya2         146 EDRIVKETFRN  156 (192)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            44456777775

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.33  E-value=7.3e-12  Score=122.79  Aligned_cols=157  Identities=20%  Similarity=0.224  Sum_probs=107.3

Q ss_pred             cccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCC------------CcEEEEEeCCHHHHHHH
Q 017476          169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS------------KGSIIAVDLNPLAAAVA  236 (371)
Q Consensus       169 vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~------------~~~V~gvDis~~al~~A  236 (371)
                      .+.|+..++.+++.+.        ...+.+|+|.+||+|.+.+.+.+.+..            ...++|+|+++.+..+|
T Consensus       144 f~TP~~Iv~~mv~ll~--------~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la  215 (425)
T d2okca1         144 YFTPRPLIQAMVDCIN--------PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLA  215 (425)
T ss_dssp             GCCCHHHHHHHHHHHC--------CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHH
T ss_pred             hccchhhhHhhheecc--------CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHH
Confidence            4678877777666432        224569999999999999999876421            12499999999999999


Q ss_pred             HHHHHHcCCCC-cEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHH
Q 017476          237 AFNAQRYGLQD-IIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGT  315 (371)
Q Consensus       237 ~~n~~~~gl~~-~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a  315 (371)
                      +.|+..+|... ...+..+|.++...  ..+||+|++||||........ ...  +.    ....+..  +....++..+
T Consensus       216 ~~n~~l~g~~~~~~~i~~~d~l~~~~--~~~fD~Ii~NPPfg~~~~~~~-~~~--~~----~~~~~~~--~~~~~Fi~~~  284 (425)
T d2okca1         216 SMNLYLHGIGTDRSPIVCEDSLEKEP--STLVDVILANPPFGTRPAGSV-DIN--RP----DFYVETK--NNQLNFLQHM  284 (425)
T ss_dssp             HHHHHHTTCCSSCCSEEECCTTTSCC--SSCEEEEEECCCSSCCCTTCC-CCC--CT----TSSSCCS--CHHHHHHHHH
T ss_pred             HhhhhhcCCccccceeecCchhhhhc--ccccceEEecCCCCCCccccc-hhh--hh----hcccccc--cHHHHHHHHH
Confidence            99999988753 46788898876543  368999999999953322110 000  00    0011111  2233588888


Q ss_pred             hcccccCcEEEEEECC-----cCcHHHHHHHHhc
Q 017476          316 ASMLKPGGFFAFETNG-----EKQCKFLKNYLEN  344 (371)
Q Consensus       316 ~~~LkpgG~lvle~~~-----~~q~~~v~~~l~~  344 (371)
                      ...|++||.+++.++.     ......+++.|.+
T Consensus       285 ~~~Lk~~G~~~iI~p~~~L~~~~~~~~iR~~Ll~  318 (425)
T d2okca1         285 MLMLKTGGRAAVVLPDNVLFEAGAGETIRKRLLQ  318 (425)
T ss_dssp             HHHEEEEEEEEEEEEHHHHHCSTHHHHHHHHHHH
T ss_pred             HHhcCCCCeEEEEechHHhhhhhhHHHHHHHHHH
Confidence            8999999999988752     1224577877775

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2e-12  Score=116.03  Aligned_cols=120  Identities=17%  Similarity=0.277  Sum_probs=96.4

Q ss_pred             chHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 017476          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ  253 (371)
Q Consensus       174 p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~  253 (371)
                      |+.-.++..+.+..       ++++|||+|||+|.-++.+|+.+.++++|+++|++++..+.|++|++..|+.++++++.
T Consensus        45 ~~~g~lL~~L~~~~-------~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~  117 (219)
T d2avda1          45 CEQAQLLANLARLI-------QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRL  117 (219)
T ss_dssp             HHHHHHHHHHHHHT-------TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred             HHHHHHHHHHHHcc-------CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEE
Confidence            45556666665554       46799999999999999999988668999999999999999999999999999999999


Q ss_pred             cCcccccccC-----CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476          254 GSWFGKLKDV-----EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE  328 (371)
Q Consensus       254 gD~~~~l~~~-----~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle  328 (371)
                      ||..+.++..     .++||+|+.+                  ++.           +.|...++.+.+.|+|||.+++.
T Consensus       118 Gda~e~l~~~~~~~~~~~fD~ifiD------------------~dk-----------~~y~~~~~~~~~lL~~GGvii~D  168 (219)
T d2avda1         118 KPALETLDELLAAGEAGTFDVAVVD------------------ADK-----------ENCSAYYERCLQLLRPGGILAVL  168 (219)
T ss_dssp             SCHHHHHHHHHHTTCTTCEEEEEEC------------------SCS-----------TTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eehhhcchhhhhhcccCCccEEEEe------------------CCH-----------HHHHHHHHHHHHHhcCCcEEEEe
Confidence            9987755322     4689999983                  110           12345667778999999999996


Q ss_pred             E
Q 017476          329 T  329 (371)
Q Consensus       329 ~  329 (371)
                      -
T Consensus       169 n  169 (219)
T d2avda1         169 R  169 (219)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.29  E-value=1e-11  Score=111.70  Aligned_cols=122  Identities=20%  Similarity=0.197  Sum_probs=88.4

Q ss_pred             eEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH
Q 017476          163 LSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (371)
Q Consensus       163 ~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~  242 (371)
                      +.+.++..+..|....   .+++.+    +..++.+|||+|||+|.++..+|+.   ..+|+++|+++++++.|++|...
T Consensus        45 l~i~~g~~~~~p~~~a---~ml~~L----~l~~g~~VLdIG~GsGy~ta~La~l---~~~V~aiE~~~~~~~~A~~~~~~  114 (224)
T d1vbfa_          45 LPILPGINTTALNLGI---FMLDEL----DLHKGQKVLEIGTGIGYYTALIAEI---VDKVVSVEINEKMYNYASKLLSY  114 (224)
T ss_dssp             EEEETTEEECCHHHHH---HHHHHT----TCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHTT
T ss_pred             cccCCCCceehhhhHH---HHHHHh----hhcccceEEEecCCCCHHHHHHHHH---hcccccccccHHHHHHHHHHHhc
Confidence            5556666666554432   334444    3446789999999999999999986   36999999999999999998764


Q ss_pred             cCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccC
Q 017476          243 YGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPG  322 (371)
Q Consensus       243 ~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~Lkpg  322 (371)
                      .   +++.++.+|.....+. .++||.|+++-..              .+-|                  +...+.|++|
T Consensus       115 ~---~nv~~~~~d~~~g~~~-~~pfD~Iiv~~a~--------------~~ip------------------~~l~~qLk~G  158 (224)
T d1vbfa_         115 Y---NNIKLILGDGTLGYEE-EKPYDRVVVWATA--------------PTLL------------------CKPYEQLKEG  158 (224)
T ss_dssp             C---SSEEEEESCGGGCCGG-GCCEEEEEESSBB--------------SSCC------------------HHHHHTEEEE
T ss_pred             c---cccccccCchhhcchh-hhhHHHHHhhcch--------------hhhh------------------HHHHHhcCCC
Confidence            3   3599999998765543 4789999985211              1111                  1223689999


Q ss_pred             cEEEEEEC
Q 017476          323 GFFAFETN  330 (371)
Q Consensus       323 G~lvle~~  330 (371)
                      |+|++-++
T Consensus       159 GrLV~pvg  166 (224)
T d1vbfa_         159 GIMILPIG  166 (224)
T ss_dssp             EEEEEEEC
T ss_pred             CEEEEEEc
Confidence            99999874

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.28  E-value=6.7e-12  Score=113.10  Aligned_cols=120  Identities=16%  Similarity=0.325  Sum_probs=98.2

Q ss_pred             chHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 017476          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ  253 (371)
Q Consensus       174 p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~  253 (371)
                      |+.-.++..+.+..       ++++|||+||++|.-++.+|+.++++++|+.+|.+++..+.|++|+++.|+.++++++.
T Consensus        45 ~~~g~~L~~L~~~~-------~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~  117 (227)
T d1susa1          45 ADEGQFLSMLLKLI-------NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFRE  117 (227)
T ss_dssp             HHHHHHHHHHHHHH-------TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEE
T ss_pred             HHHHHHHHHHHHhc-------CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeee
Confidence            55566677666665       46799999999999999999998668999999999999999999999999999999999


Q ss_pred             cCcccccccC------CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEE
Q 017476          254 GSWFGKLKDV------EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF  327 (371)
Q Consensus       254 gD~~~~l~~~------~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvl  327 (371)
                      ||..+.++.+      .++||+|+.+-                .+             ..|...++.+.++|+|||.+++
T Consensus       118 g~a~~~L~~l~~~~~~~~~fD~iFiDa----------------~k-------------~~y~~~~e~~~~ll~~gGiii~  168 (227)
T d1susa1         118 GPALPVLDEMIKDEKNHGSYDFIFVDA----------------DK-------------DNYLNYHKRLIDLVKVGGVIGY  168 (227)
T ss_dssp             SCHHHHHHHHHHCGGGTTCBSEEEECS----------------CS-------------TTHHHHHHHHHHHBCTTCCEEE
T ss_pred             hHHHHHHHHHHhccccCCceeEEEecc----------------ch-------------hhhHHHHHHHHhhcCCCcEEEE
Confidence            9997765432      46899999830                00             1244667777889999999999


Q ss_pred             EE
Q 017476          328 ET  329 (371)
Q Consensus       328 e~  329 (371)
                      .-
T Consensus       169 DN  170 (227)
T d1susa1         169 DN  170 (227)
T ss_dssp             ET
T ss_pred             cc
Confidence            63

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=2e-11  Score=122.73  Aligned_cols=156  Identities=20%  Similarity=0.226  Sum_probs=102.5

Q ss_pred             cccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCC-----------------CcEEEEEeCCHH
Q 017476          169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS-----------------KGSIIAVDLNPL  231 (371)
Q Consensus       169 vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~-----------------~~~V~gvDis~~  231 (371)
                      .|.|+...+.+++.+.        ...+.+|+|.+||+|.+.+.+.+.+..                 ...++|+|+++.
T Consensus       146 fyTP~~Iv~~mv~ll~--------~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~  217 (524)
T d2ar0a1         146 YFTPRPLIKTIIHLLK--------PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPG  217 (524)
T ss_dssp             CCCCHHHHHHHHHHHC--------CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHH
T ss_pred             hccccchhHhhhhccc--------CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHH
Confidence            6679987777776432        234568999999999999988775411                 125899999999


Q ss_pred             HHHHHHHHHHHcCCCCc----EEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHH
Q 017476          232 AAAVAAFNAQRYGLQDI----IEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDY  307 (371)
Q Consensus       232 al~~A~~n~~~~gl~~~----v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~  307 (371)
                      +..+|+.|+..++....    -.+..++.+........+||+|++||||..........    .+.+      +....  
T Consensus       218 ~~~la~~nl~l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~----~~~~------~~~~~--  285 (524)
T d2ar0a1         218 TRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITR----TFVH------PTSNK--  285 (524)
T ss_dssp             HHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCS----CCSS------CCSCH--
T ss_pred             HHHHHHHHHHhhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchh----hhcc------ccccc--
Confidence            99999999988876432    23445554432112236899999999997543321100    1111      11111  


Q ss_pred             HHHHHHHHhcccccCcEEEEEEC-C----cCcHHHHHHHHhc
Q 017476          308 LLHLCNGTASMLKPGGFFAFETN-G----EKQCKFLKNYLEN  344 (371)
Q Consensus       308 ~~~il~~a~~~LkpgG~lvle~~-~----~~q~~~v~~~l~~  344 (371)
                      .-.+++.+.+.|++||++++.++ +    ......+++.|.+
T Consensus       286 ~~~Fi~~~l~~Lk~gGr~aiIlP~~~Lf~~~~~~~iR~~Ll~  327 (524)
T d2ar0a1         286 QLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMD  327 (524)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTHHHHHHHHHHH
T ss_pred             cHHHHHHHHHhccccCcEEEEEehHHhhhhhhhHHHHHHHHH
Confidence            22578888899999999999874 1    2234567777765

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=2.3e-11  Score=111.54  Aligned_cols=137  Identities=11%  Similarity=0.020  Sum_probs=90.7

Q ss_pred             CCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC--------------------------
Q 017476          193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ--------------------------  246 (371)
Q Consensus       193 ~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~--------------------------  246 (371)
                      ...+.++||+|||+|.+.+..+...  ..+|+|+|+|+.+++.|++++......                          
T Consensus        52 ~~~g~~vLDiGcG~g~~~~~~~~~~--~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  129 (263)
T d2g72a1          52 EVSGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQ  129 (263)
T ss_dssp             CSCCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHH
T ss_pred             CCCCcEEEEeccCCCHHHHHHhccc--CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHH
Confidence            4467899999999998876555432  358999999999999999886532210                          


Q ss_pred             ---CcEEEEEcCcccc-----cccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcc
Q 017476          247 ---DIIEIRQGSWFGK-----LKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASM  318 (371)
Q Consensus       247 ---~~v~~~~gD~~~~-----l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~  318 (371)
                         ....+...|..+.     .....++||+|++.              .+..|-+        ...+.+..+++++.++
T Consensus       130 ~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~--------------~~l~~i~--------~~~~~~~~~l~~~~~~  187 (263)
T d2g72a1         130 LRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSA--------------FCLEAVS--------PDLASFQRALDHITTL  187 (263)
T ss_dssp             HHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEE--------------SCHHHHC--------SSHHHHHHHHHHHHTT
T ss_pred             hhhhhhccccccccCCCccccCCcCcCccCeeeeH--------------HHHHHHc--------cCHHHHHHHHHHHHHH
Confidence               0013344555432     11224679999982              1111110        0134577899999999


Q ss_pred             cccCcEEEEEEC---------------CcCcHHHHHHHHhccccCCceeEEEE
Q 017476          319 LKPGGFFAFETN---------------GEKQCKFLKNYLENDSACSFCNVSIV  356 (371)
Q Consensus       319 LkpgG~lvle~~---------------~~~q~~~v~~~l~~~~~~gf~~v~~~  356 (371)
                      |||||.|++...               ..-..+.+++++++   .||..+++.
T Consensus       188 LkPGG~li~~~~~~~~~~~~~~~~~~~~~~t~e~v~~~l~~---aGf~v~~~~  237 (263)
T d2g72a1         188 LRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVR---SGYKVRDLR  237 (263)
T ss_dssp             EEEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHH---TTEEEEEEE
T ss_pred             cCCCCEEEEecccCCcccccCCcccccCCCCHHHHHHHHHH---CCCeEEEEE
Confidence            999999988321               12367889999996   789766543

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.19  E-value=2e-11  Score=109.68  Aligned_cols=135  Identities=16%  Similarity=0.206  Sum_probs=95.4

Q ss_pred             cccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCC-----CcEEEEEeCCHH
Q 017476          157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS-----KGSIIAVDLNPL  231 (371)
Q Consensus       157 ~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~-----~~~V~gvDis~~  231 (371)
                      .|.+..+.+..+..+-.|-.   .-.+++.+ . .+..++.+|||+|||||..+..+++..++     ..+|+++|++++
T Consensus        47 aY~D~~lpi~~~~~is~P~~---~a~~l~~L-~-~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~  121 (223)
T d1r18a_          47 PYMDAPQPIGGGVTISAPHM---HAFALEYL-R-DHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAE  121 (223)
T ss_dssp             TTBSSCEEEETTEEECCHHH---HHHHHHHT-T-TTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHH
T ss_pred             ccCCCCccccCCceeehhhh---HHHHHHHH-h-hccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHH
Confidence            46677777788877765543   23344433 1 12335779999999999999999887532     348999999999


Q ss_pred             HHHHHHHHHHHc-----CCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHH
Q 017476          232 AAAVAAFNAQRY-----GLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLD  306 (371)
Q Consensus       232 al~~A~~n~~~~-----gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~  306 (371)
                      .++.|++|+...     +.. ++.++++|..+..+. .+.||.|+++-..              .+.|.           
T Consensus       122 l~~~a~~~l~~~~~~~~~~~-nv~~~~~d~~~~~~~-~~~fD~Iiv~~a~--------------~~~p~-----------  174 (223)
T d1r18a_         122 LVRRSKANLNTDDRSMLDSG-QLLIVEGDGRKGYPP-NAPYNAIHVGAAA--------------PDTPT-----------  174 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT-SEEEEESCGGGCCGG-GCSEEEEEECSCB--------------SSCCH-----------
T ss_pred             HHHHHHHhhhhcchhhcCcc-EEEEEeccccccccc-ccceeeEEEEeec--------------hhchH-----------
Confidence            999999997654     333 599999998775544 4689999984211              11111           


Q ss_pred             HHHHHHHHHhcccccCcEEEEEEC
Q 017476          307 YLLHLCNGTASMLKPGGFFAFETN  330 (371)
Q Consensus       307 ~~~~il~~a~~~LkpgG~lvle~~  330 (371)
                         .+    .+.||+||++++-++
T Consensus       175 ---~l----~~~Lk~gG~lV~pvg  191 (223)
T d1r18a_         175 ---EL----INQLASGGRLIVPVG  191 (223)
T ss_dssp             ---HH----HHTEEEEEEEEEEES
T ss_pred             ---HH----HHhcCCCcEEEEEEe
Confidence               22    478999999999884

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=3.2e-10  Score=105.19  Aligned_cols=165  Identities=15%  Similarity=0.155  Sum_probs=115.2

Q ss_pred             CCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEE
Q 017476          193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS  272 (371)
Q Consensus       193 ~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvs  272 (371)
                      ..++.+|||+|+|.|.=+..++... .++.|+++|+++.-++..++|+++.|+.+ +.....|.........+.||.|+.
T Consensus       100 ~~~g~~vLD~CAaPGgKt~~la~l~-~~~~i~a~d~~~~R~~~l~~~~~r~g~~~-~~~~~~~~~~~~~~~~~~fd~IL~  177 (284)
T d1sqga2         100 PQNGEHILDLCAAPGGKTTHILEVA-PEAQVVAVDIDEQRLSRVYDNLKRLGMKA-TVKQGDGRYPSQWCGEQQFDRILL  177 (284)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHC-TTCEEEEEESSTTTHHHHHHHHHHTTCCC-EEEECCTTCTHHHHTTCCEEEEEE
T ss_pred             ccccceeEeccCccccchhhhhhhh-hhhhhhhhhcchhhhhhHhhhhhcccccc-eeeeccccccchhcccccccEEEE
Confidence            3457799999999999999999864 67899999999999999999999999875 555555543222222468999999


Q ss_pred             cCCCCCCCCcccchhhhcccCccccccCCCCc---HHH-HHHHHHHHhcccccCcEEEEEEC---CcCcHHHHHHHHhcc
Q 017476          273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDG---LDY-LLHLCNGTASMLKPGGFFAFETN---GEKQCKFLKNYLEND  345 (371)
Q Consensus       273 NPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dG---l~~-~~~il~~a~~~LkpgG~lvle~~---~~~q~~~v~~~l~~~  345 (371)
                      ++|+...+.+..        .|.....-....   +.. =+.++..|.+.|||||.+++.+-   .....+.|..++++.
T Consensus       178 DaPCSg~G~~rr--------~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE~vv~~~l~~~  249 (284)
T d1sqga2         178 DAPCSATGVIRR--------HPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRT  249 (284)
T ss_dssp             ECCCCCGGGTTT--------CTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHC
T ss_pred             eccccccCcccc--------ccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCHHHHHHHHHhC
Confidence            999987655432        222221111111   222 24799999999999999999873   333455667777763


Q ss_pred             ccCCcee----------EEEEecCCCCceEEEEE
Q 017476          346 SACSFCN----------VSIVSDFAGIQRFVTGF  369 (371)
Q Consensus       346 ~~~gf~~----------v~~~~Dl~g~~R~~~a~  369 (371)
                        .+|..          .+++++..|.+-|.+|+
T Consensus       250 --~~~~~~~~~~~~~~~~~~~P~~~~~dGFF~A~  281 (284)
T d1sqga2         250 --ADAELCETGTPEQPGKQNLPGAEEGDGFFYAK  281 (284)
T ss_dssp             --TTCEECSSBCSSSBSEEECCCTTSCCSEEEEE
T ss_pred             --CCcEEecCCCCCCCcEEECCCCCCcccEEEEE
Confidence              34543          35566667777777665

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=8.1e-11  Score=108.24  Aligned_cols=109  Identities=10%  Similarity=-0.086  Sum_probs=75.2

Q ss_pred             CCeEEEECCcccHHHHHHHHHhC---C--CcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE--EEEcCcccc-----cccC
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLG---S--KGSIIAVDLNPLAAAVAAFNAQRYGLQDIIE--IRQGSWFGK-----LKDV  263 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~---~--~~~V~gvDis~~al~~A~~n~~~~gl~~~v~--~~~gD~~~~-----l~~~  263 (371)
                      ..+|||+|||+|.++..++..+.   +  ...++|||+|+.+++.|++++........+.  +...++.+.     ....
T Consensus        41 ~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (280)
T d1jqea_          41 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKE  120 (280)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSS
T ss_pred             CCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCC
Confidence            34799999999999888876531   2  3478999999999999999986654323343  444443211     1122


Q ss_pred             CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC
Q 017476          264 EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN  330 (371)
Q Consensus       264 ~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~  330 (371)
                      .++||+|++.              .+..|-+            ....+++.+.++|+|||.+++.+.
T Consensus       121 ~~~fD~I~~~--------------~~l~~~~------------d~~~~l~~l~~~LkpgG~l~i~~~  161 (280)
T d1jqea_         121 LQKWDFIHMI--------------QMLYYVK------------DIPATLKFFHSLLGTNAKMLIIVV  161 (280)
T ss_dssp             CCCEEEEEEE--------------SCGGGCS------------CHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCceeEEEEc--------------cceecCC------------CHHHHHHHHHhhCCCCCEEEEEEe
Confidence            4789999993              2222322            234788999999999999988763

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=7e-11  Score=111.92  Aligned_cols=120  Identities=18%  Similarity=0.216  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-------CC-CC
Q 017476          176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY-------GL-QD  247 (371)
Q Consensus       176 te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~-------gl-~~  247 (371)
                      ...++..+++.+    ...++.+|||+|||+|.+++.+|+.. +..+++|||+|+.+++.|+++.+..       |. ..
T Consensus       136 ~~~~~~~~~~~~----~l~~~~~vlD~GcG~G~~~~~~a~~~-~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~  210 (328)
T d1nw3a_         136 SFDLVAQMIDEI----KMTDDDLFVDLGSGVGQVVLQVAAAT-NCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHA  210 (328)
T ss_dssp             CHHHHHHHHHHS----CCCTTCEEEEETCTTSHHHHHHHHHC-CCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             HHHHHHHHHHHc----CCCCCCEEEEcCCCCCHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCC
Confidence            344555566554    44567799999999999999999985 6678999999999999999887653       22 23


Q ss_pred             cEEEEEcCcccccccCC--CceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEE
Q 017476          248 IIEIRQGSWFGKLKDVE--GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFF  325 (371)
Q Consensus       248 ~v~~~~gD~~~~l~~~~--~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~l  325 (371)
                      +++++++|+.+.. ..+  ...|+|++|==               .|.            ......+.++.+.|||||.+
T Consensus       211 ~i~~~~gd~~~~~-~~~~~~~advi~~~~~---------------~f~------------~~~~~~l~e~~r~LKpGg~i  262 (328)
T d1nw3a_         211 EYTLERGDFLSEE-WRERIANTSVIFVNNF---------------AFG------------PEVDHQLKERFANMKEGGRI  262 (328)
T ss_dssp             CEEEEECCTTSHH-HHHHHHHCSEEEECCT---------------TTC------------HHHHHHHHHHHTTCCTTCEE
T ss_pred             ceEEEECcccccc-cccccCcceEEEEcce---------------ecc------------hHHHHHHHHHHHhCCCCcEE
Confidence            5999999997631 111  13578888521               111            12335677788999999999


Q ss_pred             EEE
Q 017476          326 AFE  328 (371)
Q Consensus       326 vle  328 (371)
                      +..
T Consensus       263 v~~  265 (328)
T d1nw3a_         263 VSS  265 (328)
T ss_dssp             EES
T ss_pred             EEe
Confidence            873

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=99.12  E-value=2e-10  Score=108.02  Aligned_cols=150  Identities=15%  Similarity=0.125  Sum_probs=105.0

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc--C--CCCcEEEEEcCcccccccCCCceeEE
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY--G--LQDIIEIRQGSWFGKLKDVEGKLSGV  270 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~--g--l~~~v~~~~gD~~~~l~~~~~~fDlI  270 (371)
                      .+++||.+|.|.|..+..+++. .+..+|++||++++.+++|++.+...  +  -.++++++.+|+.+.+....++||+|
T Consensus        77 ~pk~VLiiG~G~G~~~~~ll~~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (312)
T d1uira_          77 EPKRVLIVGGGEGATLREVLKH-PTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (312)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTS-TTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CcceEEEeCCCchHHHHHHHhc-CCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence            4679999999999999999875 36779999999999999999987432  1  24579999999998877666789999


Q ss_pred             EEcCC--CCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcC-cH----HHHHHHHh
Q 017476          271 VSNPP--YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEK-QC----KFLKNYLE  343 (371)
Q Consensus       271 vsNPP--Yi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~-q~----~~v~~~l~  343 (371)
                      +++++  +....             |...|.        -+++++.+.+.|+|||++++..+... ..    ..+.+.++
T Consensus       156 i~D~~dp~~~~~-------------~~~~L~--------t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~  214 (312)
T d1uira_         156 IIDLTDPVGEDN-------------PARLLY--------TVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVR  214 (312)
T ss_dssp             EEECCCCBSTTC-------------GGGGGS--------SHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHH
T ss_pred             EEeCCCcccccc-------------hhhhhh--------hHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHH
Confidence            98753  32111             001111        13678888999999999998663221 22    23344454


Q ss_pred             ccccCCceeEEEEec----CCCCceEEEEEe
Q 017476          344 NDSACSFCNVSIVSD----FAGIQRFVTGFR  370 (371)
Q Consensus       344 ~~~~~gf~~v~~~~D----l~g~~R~~~a~~  370 (371)
                          ..|..|..+..    +.+..-|++|.+
T Consensus       215 ----~~F~~V~~y~~~vPs~~~~w~f~~aS~  241 (312)
T d1uira_         215 ----EAFRYVRSYKNHIPGFFLNFGFLLASD  241 (312)
T ss_dssp             ----TTCSEEEEEEEEEGGGTEEEEEEEEES
T ss_pred             ----HhCceEEEEEeeeCCcCCCCEeEEEeC
Confidence                45888887654    333445666653

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.07  E-value=2e-09  Score=101.10  Aligned_cols=142  Identities=18%  Similarity=0.286  Sum_probs=102.8

Q ss_pred             CCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEE
Q 017476          193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS  272 (371)
Q Consensus       193 ~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvs  272 (371)
                      ..++.+|||+|+|.|.=+..++......+.++++|+++.-+...++|+++.|..+ +.+...|.... ....+.||.|+.
T Consensus       114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~-i~~~~~d~~~~-~~~~~~fD~ILv  191 (313)
T d1ixka_         114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLN-VILFHSSSLHI-GELNVEFDKILL  191 (313)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCS-EEEESSCGGGG-GGGCCCEEEEEE
T ss_pred             CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhc-ccccccccccc-ccccccccEEEE
Confidence            3457799999999999999999887677899999999999999999999999976 77777776543 333578999999


Q ss_pred             cCCCCCCCCcccchhhhcccCccccccCCCCcH----HHHHHHHHHHhcccccCcEEEEEEC---CcCcHHHHHHHHhc
Q 017476          273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGL----DYLLHLCNGTASMLKPGGFFAFETN---GEKQCKFLKNYLEN  344 (371)
Q Consensus       273 NPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl----~~~~~il~~a~~~LkpgG~lvle~~---~~~q~~~v~~~l~~  344 (371)
                      ++|....+.+..-        |.....-..+.+    ..-.+++..+.+.|||||.+++.+-   .....+.|..++++
T Consensus       192 DaPCSg~G~~~r~--------p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~VV~~~L~~  262 (313)
T d1ixka_         192 DAPCTGSGTIHKN--------PERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDN  262 (313)
T ss_dssp             ECCTTSTTTCC----------------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHH
T ss_pred             ccccccCCceeec--------cchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHHHHHHHHhc
Confidence            9999876654321        211111111112    2234799999999999999999773   23344555666654

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.05  E-value=2e-09  Score=99.16  Aligned_cols=152  Identities=15%  Similarity=0.158  Sum_probs=108.9

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-C--CCCcEEEEEcCcccccccCCCceeEEE
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY-G--LQDIIEIRQGSWFGKLKDVEGKLSGVV  271 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~-g--l~~~v~~~~gD~~~~l~~~~~~fDlIv  271 (371)
                      .+++||-+|-|.|..+..+.+. .+..+|+.||++++.++.|++....+ +  -..|++++.+|..+.+.....+||+|+
T Consensus        75 ~p~~vLiiGgG~G~~~~~~l~~-~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi  153 (274)
T d1iy9a_          75 NPEHVLVVGGGDGGVIREILKH-PSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (274)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTC-TTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CcceEEecCCCCcHHHHHHHhc-CCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence            4679999999999999999885 35679999999999999999976432 2  135799999999888776667899999


Q ss_pred             EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC-cCcHHHHHHHHhccccCCc
Q 017476          272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG-EKQCKFLKNYLENDSACSF  350 (371)
Q Consensus       272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~-~~q~~~v~~~l~~~~~~gf  350 (371)
                      .+++-.....              ..|.        -+++++.+.+.|+|||+++...+. ..+.+.+..+++.. ..-|
T Consensus       154 ~D~~~p~~~~--------------~~L~--------t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl-~~~F  210 (274)
T d1iy9a_         154 VDSTEPVGPA--------------VNLF--------TKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDV-KEIF  210 (274)
T ss_dssp             ESCSSCCSCC--------------CCCS--------TTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHH-HTTC
T ss_pred             EcCCCCCCcc--------------hhhc--------cHHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhh-hhhc
Confidence            9865311110              0111        126788889999999999997743 23444444444433 2448


Q ss_pred             eeEEEEecC-----CCCceEEEEEe
Q 017476          351 CNVSIVSDF-----AGIQRFVTGFR  370 (371)
Q Consensus       351 ~~v~~~~Dl-----~g~~R~~~a~~  370 (371)
                      ..+..+.-.     .|..-|++|-+
T Consensus       211 ~~v~~y~~~vPsy~~g~w~f~~aS~  235 (274)
T d1iy9a_         211 PITKLYTANIPTYPSGLWTFTIGSK  235 (274)
T ss_dssp             SEEEEEEECCTTSGGGCEEEEEEES
T ss_pred             CceEEEEEEeeecCCCceEEEEEcC
Confidence            888777532     46667777654

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=5.8e-09  Score=96.97  Aligned_cols=142  Identities=15%  Similarity=0.108  Sum_probs=98.5

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc--CCCceeEEE
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD--VEGKLSGVV  271 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~--~~~~fDlIv  271 (371)
                      .++.+|||+|+|.|.-+..+|..+++.++|+|+|+++.-++.+++|++++|+.+ +.+...|.......  ..++||.|+
T Consensus        93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~-~~~~~~d~~~~~~~~~~~~~fD~VL  171 (293)
T d2b9ea1          93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC-CELAEEDFLAVSPSDPRYHEVHYIL  171 (293)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred             CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccc-eeeeehhhhhhcccccccceeeEEe
Confidence            357799999999999999999877778899999999999999999999999976 99999987653221  136799999


Q ss_pred             EcCCCCCCCCcccchhhhcccCcccccc--CCCC---cHHHH-HHHHHHHhcccccCcEEEEEEC---CcCcHHHHHHHH
Q 017476          272 SNPPYIPSDDISGLQVEVGKHEPRLALD--GGVD---GLDYL-LHLCNGTASMLKPGGFFAFETN---GEKQCKFLKNYL  342 (371)
Q Consensus       272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~--gg~d---Gl~~~-~~il~~a~~~LkpgG~lvle~~---~~~q~~~v~~~l  342 (371)
                      .+||+...+.+..        .|.....  ....   .+..+ +.++..|. .|++||.|++.+.   .....+.|..++
T Consensus       172 ~DaPCSg~G~~~r--------~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~~ENe~vV~~~L  242 (293)
T d2b9ea1         172 LDPSCSGSGMPSR--------QLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQEENEDVVRDAL  242 (293)
T ss_dssp             ECCCCCC--------------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCGGGTHHHHHHHH
T ss_pred             ecCcccchhhhcc--------cchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCChhHhHHHHHHHH
Confidence            9999987655432        1221111  1111   12222 45777777 4799999999874   334555666777


Q ss_pred             hcc
Q 017476          343 END  345 (371)
Q Consensus       343 ~~~  345 (371)
                      ++.
T Consensus       243 ~~~  245 (293)
T d2b9ea1         243 QQN  245 (293)
T ss_dssp             TTS
T ss_pred             HhC
Confidence            653

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.04  E-value=5.2e-10  Score=108.50  Aligned_cols=118  Identities=12%  Similarity=0.121  Sum_probs=80.8

Q ss_pred             HHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC-------C-CCcEE
Q 017476          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG-------L-QDIIE  250 (371)
Q Consensus       179 lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~g-------l-~~~v~  250 (371)
                      ++..+++.+    ...++.+|||||||+|.+++.+|..+ +..+|+|||+++.+++.|+++++..+       . ...+.
T Consensus       204 ~i~~Il~~l----~Lkpgd~fLDLGCG~G~~vl~aA~~~-g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~  278 (406)
T d1u2za_         204 FLSDVYQQC----QLKKGDTFMDLGSGVGNCVVQAALEC-GCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVE  278 (406)
T ss_dssp             HHHHHHHHT----TCCTTCEEEEESCTTSHHHHHHHHHH-CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEE
T ss_pred             HHHHHHHHh----CCCCCCEEEeCCCCCcHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccce
Confidence            444444444    45567899999999999999999987 56799999999999999999987642       1 11233


Q ss_pred             E-EEcCcccccc--cCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEE
Q 017476          251 I-RQGSWFGKLK--DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF  327 (371)
Q Consensus       251 ~-~~gD~~~~l~--~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvl  327 (371)
                      + ..+++.+...  .....+|+|++|= +              .|.            ..+...+.++.+.|||||.++.
T Consensus       279 ~~~~~~f~~~~~~d~~~~~adVV~inn-~--------------~f~------------~~l~~~L~ei~r~LKPGGrIVs  331 (406)
T d1u2za_         279 FSLKKSFVDNNRVAELIPQCDVILVNN-F--------------LFD------------EDLNKKVEKILQTAKVGCKIIS  331 (406)
T ss_dssp             EEESSCSTTCHHHHHHGGGCSEEEECC-T--------------TCC------------HHHHHHHHHHHTTCCTTCEEEE
T ss_pred             eeeeechhhccccccccccceEEEEec-c--------------cCc------------hHHHHHHHHHHHhcCCCcEEEE
Confidence            3 4455543211  1123578888751 1              111            2344677888899999999886


Q ss_pred             E
Q 017476          328 E  328 (371)
Q Consensus       328 e  328 (371)
                      .
T Consensus       332 ~  332 (406)
T d1u2za_         332 L  332 (406)
T ss_dssp             S
T ss_pred             e
Confidence            3

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.04  E-value=8.5e-10  Score=102.70  Aligned_cols=196  Identities=11%  Similarity=0.087  Sum_probs=124.6

Q ss_pred             CCceeeEee-cccccceeeEeeCCcccccch----HHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCC
Q 017476          146 RKPFQYLVG-CEHWRDLVLSVEEGVFIPRPE----TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSK  220 (371)
Q Consensus       146 ~~P~~yi~g-~~~f~~~~~~v~~~vliPrp~----te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~  220 (371)
                      .-|.|.|.- +..-+|..+.++..+-+-..+    .|.++...+-.      ...+++||-+|.|.|..+..+++. .+.
T Consensus        41 ~S~yQ~i~i~~s~~~G~~l~LDg~~q~~~~De~~YhE~l~h~pl~~------~~~pk~VLiiGgG~G~~~r~~l~~-~~~  113 (295)
T d1inla_          41 QSDIQRIDIFENPDLGVVFALDGITMTTEKDEFMYHEMLAHVPMFL------HPNPKKVLIIGGGDGGTLREVLKH-DSV  113 (295)
T ss_dssp             ECSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHH------SSSCCEEEEEECTTCHHHHHHTTS-TTC
T ss_pred             CCCCcEEEEEEcCCcceEEEECCEEEEecCchhhhhhhhcchhHhh------CCCCceEEEecCCchHHHHHHHhc-CCC
Confidence            456776633 223335555555544443222    33333332211      124679999999999999999885 366


Q ss_pred             cEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCcccc
Q 017476          221 GSIIAVDLNPLAAAVAAFNAQRYG--L-QDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLA  297 (371)
Q Consensus       221 ~~V~gvDis~~al~~A~~n~~~~g--l-~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~a  297 (371)
                      .+|++||+++..++.|++....+.  + .+|++++.+|..+.+....++||+|+++.+-....             |...
T Consensus       114 ~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp~~~-------------~~~~  180 (295)
T d1inla_         114 EKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTDPTAG-------------QGGH  180 (295)
T ss_dssp             SEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEEC-----------------------
T ss_pred             ceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEEcCCCCCcC-------------chhh
Confidence            799999999999999998765431  2 45899999999998877778999999975431110             0001


Q ss_pred             ccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCc-CcHHHHHHHHhccccCCceeEEEEe----cC-CCCceEEEEEe
Q 017476          298 LDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGE-KQCKFLKNYLENDSACSFCNVSIVS----DF-AGIQRFVTGFR  370 (371)
Q Consensus       298 L~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~-~q~~~v~~~l~~~~~~gf~~v~~~~----Dl-~g~~R~~~a~~  370 (371)
                      |.        -+++++.+.+.|+|||++++..+.. .+.+.+..+++.. +.-|..+..+.    -+ +|..-|++|.+
T Consensus       181 L~--------t~efy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl-~~vF~~v~~y~~~vPtyp~G~w~f~~aSk  250 (295)
T d1inla_         181 LF--------TEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRI-SKVFPITRVYLGFMTTYPSGMWSYTFASK  250 (295)
T ss_dssp             CC--------SHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHH-HHHCSEEEEEEEECTTSTTSEEEEEEEES
T ss_pred             hc--------cHHHHHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHH-HhhcceeEEEEeeeceecCcccEEEEEeC
Confidence            11        2378888899999999999987542 3444444444432 12377776653    33 35667777754

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.04  E-value=3.8e-09  Score=95.67  Aligned_cols=136  Identities=17%  Similarity=0.129  Sum_probs=96.9

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ...+|+|+|||+|.+++.+++++ |+.+++..|+ +..++       ..+..++++++.+|++++++    ..|+++.. 
T Consensus        81 ~~~~vlDiGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~-------~~~~~~ri~~~~gd~~~~~p----~~D~~~l~-  146 (244)
T d1fp1d2          81 GISTLVDVGGGSGRNLELIISKY-PLIKGINFDL-PQVIE-------NAPPLSGIEHVGGDMFASVP----QGDAMILK-  146 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHT-------TCCCCTTEEEEECCTTTCCC----CEEEEEEE-
T ss_pred             CCcEEEEecCCCcHHHHHHHHHC-CCCeEEEecc-hhhhh-------ccCCCCCeEEecCCcccccc----cceEEEEe-
Confidence            34689999999999999999996 9999999998 44433       34456789999999998754    35988872 


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC------------------------
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN------------------------  330 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~------------------------  330 (371)
                                   .+...-|          -+....+++.+++.|+|||.+++.-.                        
T Consensus       147 -------------~vLh~~~----------de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~  203 (244)
T d1fp1d2         147 -------------AVCHNWS----------DEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFI  203 (244)
T ss_dssp             -------------SSGGGSC----------HHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHH
T ss_pred             -------------hhhhhCC----------HHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHh
Confidence                         1211111          24456899999999999998777321                        


Q ss_pred             ---C-cCcHHHHHHHHhccccCCceeEEEEecCCCCceEEEEEe
Q 017476          331 ---G-EKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFR  370 (371)
Q Consensus       331 ---~-~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~~  370 (371)
                         | .+..++..+++++   +||+.+++..-..+..-++=++|
T Consensus       204 ~~~g~ert~~e~~~ll~~---AGF~~v~v~~~~~~~~~viE~~K  244 (244)
T d1fp1d2         204 TVGGRERTEKQYEKLSKL---SGFSKFQVACRAFNSLGVMEFYK  244 (244)
T ss_dssp             HHSCCCEEHHHHHHHHHH---TTCSEEEEEEEETTTEEEEEEEC
T ss_pred             hCCCcCCCHHHHHHHHHH---cCCCceEEEecCCCCEEEEEEeC
Confidence               0 1124566777775   78999999865445444554443

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.01  E-value=1.4e-09  Score=100.36  Aligned_cols=150  Identities=13%  Similarity=0.128  Sum_probs=104.7

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH---------cCCCCcEEEEEcCcccccccCCC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR---------YGLQDIIEIRQGSWFGKLKDVEG  265 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~---------~gl~~~v~~~~gD~~~~l~~~~~  265 (371)
                      .+++||-+|.|.|..+..+.+.  +..+|++||++++.+++|++-...         ....+|++++.+|..+.+.. .+
T Consensus        72 ~p~~vLiiG~G~G~~~~~~l~~--~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~-~~  148 (276)
T d1mjfa_          72 KPKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NR  148 (276)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CC
T ss_pred             CCceEEEecCCchHHHHHHHHh--CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc-cC
Confidence            4679999999999999988874  556999999999999999975421         12346899999999877764 57


Q ss_pred             ceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC-cCcHHHHHHHHhc
Q 017476          266 KLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG-EKQCKFLKNYLEN  344 (371)
Q Consensus       266 ~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~-~~q~~~v~~~l~~  344 (371)
                      +||+|+++.+-... ...             .|.        -.++++.+.+.|+|||++++..+. ..+.+.+..+++.
T Consensus       149 ~yDvIi~D~~~~~~-~~~-------------~L~--------t~eF~~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~~~~t  206 (276)
T d1mjfa_         149 GFDVIIADSTDPVG-PAK-------------VLF--------SEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKE  206 (276)
T ss_dssp             CEEEEEEECCCCC-------------------TT--------SHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCC-Ccc-------------ccc--------CHHHHHhhHhhcCCCceEEEecCCcchhHHHHHHHHHH
Confidence            89999998653211 100             011        136788889999999999987632 2344555554443


Q ss_pred             cccCCceeEEEEe----cCCCCceEEEEEe
Q 017476          345 DSACSFCNVSIVS----DFAGIQRFVTGFR  370 (371)
Q Consensus       345 ~~~~gf~~v~~~~----Dl~g~~R~~~a~~  370 (371)
                      . ..-|..+..+.    -+.|..-|++|.+
T Consensus       207 l-~~~F~~v~~y~~~vP~y~~~w~f~~as~  235 (276)
T d1mjfa_         207 M-KKVFDRVYYYSFPVIGYASPWAFLVGVK  235 (276)
T ss_dssp             H-HHHCSEEEEEEECCTTSSSSEEEEEEEE
T ss_pred             H-HhhCCeeEEEEecCcCCCCceEEEEEeC
Confidence            2 13388887764    3456667777754

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=2.5e-09  Score=99.09  Aligned_cols=199  Identities=12%  Similarity=0.125  Sum_probs=121.8

Q ss_pred             CCceeeEee-cccccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEE
Q 017476          146 RKPFQYLVG-CEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSII  224 (371)
Q Consensus       146 ~~P~~yi~g-~~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~  224 (371)
                      +-|.|+|.- +...+|..+.++..+-+-..+...+-+.+....  ......+++||-+|.|.|..+..+.+. .+..+|+
T Consensus        30 ~S~yQ~I~v~~~~~~g~~L~lDg~~q~~~~de~~Yhe~l~h~~--l~~~~~pk~vLiiGgG~G~~~~~~l~~-~~~~~v~  106 (285)
T d2o07a1          30 RSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLP--LCSHPNPRKVLIIGGGDGGVLREVVKH-PSVESVV  106 (285)
T ss_dssp             ECSSSEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHH--HTTSSSCCEEEEEECTTSHHHHHHTTC-TTCCEEE
T ss_pred             CCCCcEEEEEEeCCCCeEEEECCcEEEecCCHHHHHHHhccHh--hhhCcCcCeEEEeCCCchHHHHHHHHc-CCcceee
Confidence            356676633 223335555555444333222222222222111  112235679999999999999999885 3567999


Q ss_pred             EEeCCHHHHHHHHHHHHHc---CCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCC
Q 017476          225 AVDLNPLAAAVAAFNAQRY---GLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGG  301 (371)
Q Consensus       225 gvDis~~al~~A~~n~~~~---gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg  301 (371)
                      .||++++.+++|++-...+   --.+|++++.+|..+.+....++||+|+++++- +...             ...|   
T Consensus       107 ~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~D~~~-p~~~-------------~~~L---  169 (285)
T d2o07a1         107 QCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSD-PMGP-------------AESL---  169 (285)
T ss_dssp             EEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEECC--------------------------
T ss_pred             eccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEEEcCCC-CCCc-------------cccc---
Confidence            9999999999999865432   124589999999988877666799999998532 1110             0011   


Q ss_pred             CCcHHHHHHHHHHHhcccccCcEEEEEECCc-CcHHHHHHHHhccccCCceeEEEEe----cC-CCCceEEEEEe
Q 017476          302 VDGLDYLLHLCNGTASMLKPGGFFAFETNGE-KQCKFLKNYLENDSACSFCNVSIVS----DF-AGIQRFVTGFR  370 (371)
Q Consensus       302 ~dGl~~~~~il~~a~~~LkpgG~lvle~~~~-~q~~~v~~~l~~~~~~gf~~v~~~~----Dl-~g~~R~~~a~~  370 (371)
                           .-+++++.+.+.|+|||.+++..+.. .+.+.+..+.+.. +..|..+..+.    .+ .|..-|++|.+
T Consensus       170 -----~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~~~~tl-~~~F~~v~~y~~~vP~~~~g~w~f~~aSk  238 (285)
T d2o07a1         170 -----FKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFC-QSLFPVVAYAYCTIPTYPSGQIGFMLCSK  238 (285)
T ss_dssp             -------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHH-HHHCSEEEEEEEECTTSGGGEEEEEEEES
T ss_pred             -----ccHHHHHHHHHhcCCCCeEEEeccchhhhHHHHHHHHHHH-HhcCCeeeEEeeeeeecCCCCeEEEEEEC
Confidence                 12378888999999999999977432 2334444433322 13377776643    33 34556777654

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.90  E-value=1.6e-08  Score=89.30  Aligned_cols=110  Identities=17%  Similarity=0.136  Sum_probs=89.3

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      ++.+|+|+|||.|.-++.+|-.+ |+.+++.+|.+..-+...++-+...++.+ ++++++...+...  ..+||+|+|- 
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~-p~~~~~Lves~~KK~~FL~~~~~~L~L~n-v~v~~~R~E~~~~--~~~fD~V~sR-  139 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPVQSRVEEFPS--EPPFDGVISR-  139 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEEECCTTTSCC--CSCEEEEECS-
T ss_pred             cCCceeeeeccCCceeeehhhhc-ccceEEEEecchHHHHHHHHHHHHcCCcc-eeeeccchhhhcc--ccccceehhh-
Confidence            45699999999999999999874 89999999999999999999999999975 9999999876433  3589999981 


Q ss_pred             CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHH
Q 017476          275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLK  339 (371)
Q Consensus       275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~  339 (371)
                                   .                +..+..+++-+..++++||.+++--+ ....+++.
T Consensus       140 -------------A----------------~~~~~~ll~~~~~~l~~~g~~~~~KG-~~~~eEl~  174 (207)
T d1jsxa_         140 -------------A----------------FASLNDMVSWCHHLPGEQGRFYALKG-QMPEDEIA  174 (207)
T ss_dssp             -------------C----------------SSSHHHHHHHHTTSEEEEEEEEEEES-SCCHHHHH
T ss_pred             -------------h----------------hcCHHHHHHHHHHhcCCCcEEEEECC-CCHHHHHH
Confidence                         1                11244788888999999999999994 44444443

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.84  E-value=3e-09  Score=99.49  Aligned_cols=195  Identities=13%  Similarity=0.146  Sum_probs=120.4

Q ss_pred             CCceeeEee-cccccceeeEeeCCccccc----chHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCC
Q 017476          146 RKPFQYLVG-CEHWRDLVLSVEEGVFIPR----PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSK  220 (371)
Q Consensus       146 ~~P~~yi~g-~~~f~~~~~~v~~~vliPr----p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~  220 (371)
                      .-+.|.|.- +..-+|..+.++..+-+-.    ...|.++...+-.      ...+++||-+|.|.|.++..+.+. .+.
T Consensus        58 ~S~yQ~I~i~~~~~~G~~L~LDg~~q~~e~de~~YhE~l~h~pl~~------~~~pk~VLIiGgG~G~~~rellk~-~~v  130 (312)
T d2b2ca1          58 KSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLPMFA------HPDPKRVLIIGGGDGGILREVLKH-ESV  130 (312)
T ss_dssp             ECSSCEEEEEEETTTEEEEEETTEEEEESSSSSHHHHHHHHHHHHH------SSSCCEEEEESCTTSHHHHHHTTC-TTC
T ss_pred             CCCCeEEEEEEcCCcCCEEEECCceeeecccHHHHHHHhhhHHHhc------CCCCCeEEEeCCCchHHHHHHHHc-CCc
Confidence            345666533 2222344454444333321    2245555443321      124679999999999999999885 355


Q ss_pred             cEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCcccc
Q 017476          221 GSIIAVDLNPLAAAVAAFNAQRYG--L-QDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLA  297 (371)
Q Consensus       221 ~~V~gvDis~~al~~A~~n~~~~g--l-~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~a  297 (371)
                      .+|+.||++++.++.|++....+.  + .++++++.+|..+.+....++||+||++.+-. ..             |...
T Consensus       131 ~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII~D~~dp-~~-------------~~~~  196 (312)
T d2b2ca1         131 EKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITDSSDP-VG-------------PAES  196 (312)
T ss_dssp             CEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEECCC----------------------
T ss_pred             ceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEEEcCCCC-CC-------------cchh
Confidence            799999999999999998754321  1 35799999999988776667899999975421 00             0111


Q ss_pred             ccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCc-CcHHHHHHHHhccccCCceeEEEEec----C-CCCceEEEEEe
Q 017476          298 LDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGE-KQCKFLKNYLENDSACSFCNVSIVSD----F-AGIQRFVTGFR  370 (371)
Q Consensus       298 L~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~-~q~~~v~~~l~~~~~~gf~~v~~~~D----l-~g~~R~~~a~~  370 (371)
                      |        .-+++++.+.+.|+|||+++...+.. .+.+.+..+++.. ..-|..+..+..    + .|..-|++|-+
T Consensus       197 L--------~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l-~~vF~~v~~y~~~vPtyp~G~w~f~~aSk  266 (312)
T d2b2ca1         197 L--------FGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFN-RKIFPAVTYAQSIVSTYPSGSMGYLICAK  266 (312)
T ss_dssp             -------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHH-HHHCSEEEEEEEECTTSGGGEEEEEEEES
T ss_pred             h--------hhHHHHHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHh-hhccceEEEeeeccCCcCCccceeeEEEC
Confidence            1        12478888999999999999987432 2333334443322 133777766543    3 46667777753

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.79  E-value=8.3e-09  Score=99.02  Aligned_cols=104  Identities=12%  Similarity=0.049  Sum_probs=84.6

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC--------------cEEEEEcCccccc
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQD--------------IIEIRQGSWFGKL  260 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~--------------~v~~~~gD~~~~l  260 (371)
                      ++.+|||..||||..++..|.+. +...|+++|+|+.+++.+++|++.|+..+              .+.+.+.|+...+
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~-~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~  123 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALET-PAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM  123 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHS-SCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhC-CCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhh
Confidence            35699999999999999999886 56699999999999999999999998643              3677777875544


Q ss_pred             ccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          261 KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       261 ~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      ....+.||+|..+| |...                             ..+++.|.+.++.||.|.+..
T Consensus       124 ~~~~~~fDvIDiDP-fGs~-----------------------------~pfldsAi~a~~~~Gll~vTa  162 (375)
T d2dula1         124 AERHRYFHFIDLDP-FGSP-----------------------------MEFLDTALRSAKRRGILGVTA  162 (375)
T ss_dssp             HHSTTCEEEEEECC-SSCC-----------------------------HHHHHHHHHHEEEEEEEEEEE
T ss_pred             HhhcCcCCcccCCC-CCCc-----------------------------HHHHHHHHHHhccCCEEEEEe
Confidence            44456899999986 5321                             157888889999999999976

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.79  E-value=8.6e-09  Score=92.80  Aligned_cols=88  Identities=10%  Similarity=0.140  Sum_probs=67.4

Q ss_pred             HHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccc
Q 017476          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG  258 (371)
Q Consensus       179 lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~  258 (371)
                      +++.+++.+    +..++.+|||+|||+|.++..+++.   ..+|+|||+++..++.++++...+   ++++++++|+++
T Consensus         9 i~~~iv~~~----~~~~~d~VlEIGpG~G~LT~~Ll~~---~~~v~avE~D~~l~~~l~~~~~~~---~n~~i~~~D~l~   78 (235)
T d1qama_           9 NIDKIMTNI----RLNEHDNIFEIGSGKGHFTLELVQR---CNFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQ   78 (235)
T ss_dssp             HHHHHHTTC----CCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGG
T ss_pred             HHHHHHHhc----CCCCCCeEEEECCCchHHHHHHHhC---cCceEEEeeccchHHHHHHHhhcc---cchhhhhhhhhh
Confidence            344454443    3456789999999999999999986   368999999999999988875432   369999999987


Q ss_pred             ccccCCCceeEEEEcCCCC
Q 017476          259 KLKDVEGKLSGVVSNPPYI  277 (371)
Q Consensus       259 ~l~~~~~~fDlIvsNPPYi  277 (371)
                      .-.. ......||+|.||.
T Consensus        79 ~~~~-~~~~~~vv~NLPYn   96 (235)
T d1qama_          79 FKFP-KNQSYKIFGNIPYN   96 (235)
T ss_dssp             CCCC-SSCCCEEEEECCGG
T ss_pred             cccc-ccccceeeeeehhh
Confidence            4222 23445789999995

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=98.79  E-value=3.4e-09  Score=96.03  Aligned_cols=117  Identities=17%  Similarity=0.015  Sum_probs=83.4

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh---------------------------------------CCCcEEEEEeCCHHHHHH
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL---------------------------------------GSKGSIIAVDLNPLAAAV  235 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~---------------------------------------~~~~~V~gvDis~~al~~  235 (371)
                      .+..++|..||||++.+.+|...                                       .....++|.|+++.+++.
T Consensus        50 ~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~  129 (249)
T d1o9ga_          50 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  129 (249)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHH
Confidence            45579999999999999987421                                       001347899999999999


Q ss_pred             H---HHHHHHcCCCCcEEEEEcCccccccc----CCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHH
Q 017476          236 A---AFNAQRYGLQDIIEIRQGSWFGKLKD----VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYL  308 (371)
Q Consensus       236 A---~~n~~~~gl~~~v~~~~gD~~~~l~~----~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~  308 (371)
                      |   ++|+.+.|+.+.+++.+.|+++..+.    .....++||+||||...-..                 .+..+-+.|
T Consensus       130 A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~-----------------~~~~~~~~~  192 (249)
T d1o9ga_         130 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHW-----------------EGQVPGQPV  192 (249)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSS-----------------SSCCCHHHH
T ss_pred             HHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccc-----------------cccchHHHH
Confidence            8   46999999999999999999874321    13467999999999632110                 111224567


Q ss_pred             HHHHHHHhcccccCcEEEEE
Q 017476          309 LHLCNGTASMLKPGGFFAFE  328 (371)
Q Consensus       309 ~~il~~a~~~LkpgG~lvle  328 (371)
                      ..+.....+.+.....+++.
T Consensus       193 ~~~~~~l~~~~p~~s~~~it  212 (249)
T d1o9ga_         193 AGLLRSLASALPAHAVIAVT  212 (249)
T ss_dssp             HHHHHHHHHHSCTTCEEEEE
T ss_pred             HHHHHHHHccCCCCcEEEEe
Confidence            78888888888544444443

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.77  E-value=3.1e-08  Score=89.54  Aligned_cols=130  Identities=16%  Similarity=0.176  Sum_probs=92.3

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCC
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP  275 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPP  275 (371)
                      ..+|+|+|||+|.+++.+++++ |+.+++..|+ +..++       ..+..+|++++.+|++++.+    .+|+++..  
T Consensus        81 ~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~-------~~~~~~rv~~~~gD~f~~~p----~aD~~~l~--  145 (244)
T d1fp2a2          81 LESIVDVGGGTGTTAKIICETF-PKLKCIVFDR-PQVVE-------NLSGSNNLTYVGGDMFTSIP----NADAVLLK--  145 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHT-------TCCCBTTEEEEECCTTTCCC----CCSEEEEE--
T ss_pred             ceEEEEecCCccHHHHHHHHhC-CCCeEEEecC-HHHHH-------hCcccCceEEEecCcccCCC----CCcEEEEE--
Confidence            3589999999999999999996 9999999999 44443       33556789999999988643    47988872  


Q ss_pred             CCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccC---cEEEEEEC----------------------
Q 017476          276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPG---GFFAFETN----------------------  330 (371)
Q Consensus       276 Yi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~Lkpg---G~lvle~~----------------------  330 (371)
                          ..++.++                  -+....+++++++.|+||   |++++.-.                      
T Consensus       146 ----~vLHdw~------------------d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m  203 (244)
T d1fp2a2         146 ----YILHNWT------------------DKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNM  203 (244)
T ss_dssp             ----SCGGGSC------------------HHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHG
T ss_pred             ----eecccCC------------------hHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHH
Confidence                1122111                  244558999999999998   55555321                      


Q ss_pred             -----CcCcHHHHHHHHhccccCCceeEEEEecCCCCceEE
Q 017476          331 -----GEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFV  366 (371)
Q Consensus       331 -----~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~  366 (371)
                           ..+..++.++++++   +||+.+++++ ..|..-++
T Consensus       204 ~~~~G~ert~~e~~~ll~~---AGf~~~~i~~-~~~~~svI  240 (244)
T d1fp2a2         204 ACLNGKERNEEEWKKLFIE---AGFQHYKISP-LTGFLSLI  240 (244)
T ss_dssp             GGGTCCCEEHHHHHHHHHH---TTCCEEEEEE-EETTEEEE
T ss_pred             HhCCCcCCCHHHHHHHHHH---cCCceEEEEE-CCCCeEEE
Confidence                 12245677778875   7899999876 44544443

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.76  E-value=7.8e-08  Score=82.91  Aligned_cols=144  Identities=19%  Similarity=0.205  Sum_probs=100.6

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc-------cCCCce
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-------DVEGKL  267 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~-------~~~~~f  267 (371)
                      ++.+||||||+.|.++..+.+...+...|+|+|+.+.           ..++ .+.++++|..+...       ...+++
T Consensus        22 ~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i~-~~~~~~~d~~~~~~~~~~~~~~~~~~~   89 (180)
T d1ej0a_          22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPIV-GVDFLQGDFRDELVMKALLERVGDSKV   89 (180)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCCT-TEEEEESCTTSHHHHHHHHHHHTTCCE
T ss_pred             CCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------cccC-CceEeecccccchhhhhhhhhccCcce
Confidence            4679999999999999999987767789999998772           1233 48999999865321       124689


Q ss_pred             eEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhcccc
Q 017476          268 SGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSA  347 (371)
Q Consensus       268 DlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~  347 (371)
                      |+|+|+--.-.++.      ...++.         .-++.....+..|.+.|++||.+++-+-.....+.+...++.   
T Consensus        90 DlVlSD~ap~~sg~------~~~d~~---------~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~~~l~~~l~~---  151 (180)
T d1ej0a_          90 QVVMSDMAPNMSGT------PAVDIP---------RAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS---  151 (180)
T ss_dssp             EEEEECCCCCCCSC------HHHHHH---------HHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHH---
T ss_pred             eEEEecccchhccc------chhHHH---------HHHHHHHHHHHhhhhccCCCCcEEEEEecCccHHHHHHHHHh---
Confidence            99999621111110      000100         013455677888899999999999988544456677777774   


Q ss_pred             CCceeEEEEecCC----CCceEEEEE
Q 017476          348 CSFCNVSIVSDFA----GIQRFVTGF  369 (371)
Q Consensus       348 ~gf~~v~~~~Dl~----g~~R~~~a~  369 (371)
                       .|..|.+++.-+    ..+++++++
T Consensus       152 -~F~~V~~~KP~aSR~~SsE~Ylv~~  176 (180)
T d1ej0a_         152 -LFTKVKVRKPDSSRARSREVYIVAT  176 (180)
T ss_dssp             -HEEEEEEECCTTSCTTCCEEEEEEE
T ss_pred             -hcCEEEEECCCCcccCCceEEEEEe
Confidence             499999998765    466777754

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.72  E-value=3.5e-07  Score=82.09  Aligned_cols=142  Identities=14%  Similarity=0.049  Sum_probs=100.5

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc--ccCCCceeEEEE
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL--KDVEGKLSGVVS  272 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l--~~~~~~fDlIvs  272 (371)
                      ...+|+|+|||.|.-++.+|-.+ |+.+++.+|.+..-+...+.-+...++.+ +.++++.+.+..  ....++||+|+|
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~-p~~~v~Lves~~KK~~FL~~v~~~L~L~n-~~i~~~R~E~~~~~~~~~~~~D~v~s  147 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEALQLEN-TTFCHDRAETFGQRKDVRESYDIVTA  147 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred             CCCeEEeecCCCchHHHHHHHhC-CCccceeecchHHHHHHHHHHHHHhCCCC-cEEEeehhhhccccccccccceEEEE
Confidence            35689999999999999999875 89999999999999999999999999976 889988774321  122468999998


Q ss_pred             cCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCce-
Q 017476          273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFC-  351 (371)
Q Consensus       273 NPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~-  351 (371)
                                    ..                +..+..+++.+..++++||.+++--+ ....+++.+.-+.....++. 
T Consensus       148 --------------RA----------------va~l~~ll~~~~~~l~~~g~~i~~KG-~~~~~El~~a~~~~~~~~~~~  196 (239)
T d1xdza_         148 --------------RA----------------VARLSVLSELCLPLVKKNGLFVALKA-ASAEEELNAGKKAITTLGGEL  196 (239)
T ss_dssp             --------------EC----------------CSCHHHHHHHHGGGEEEEEEEEEEEC-C-CHHHHHHHHHHHHHTTEEE
T ss_pred             --------------hh----------------hhCHHHHHHHHhhhcccCCEEEEECC-CChHHHHHHHHHHHHHcCCEE
Confidence                          11                11244788889999999999999884 44555554433221124454 


Q ss_pred             -eEEEEe-cCCCCceEEEEE
Q 017476          352 -NVSIVS-DFAGIQRFVTGF  369 (371)
Q Consensus       352 -~v~~~~-Dl~g~~R~~~a~  369 (371)
                       .+..+. ...+.+|.++..
T Consensus       197 ~~v~~~~lp~~~~~r~lv~i  216 (239)
T d1xdza_         197 ENIHSFKLPIEESDRNIMVI  216 (239)
T ss_dssp             EEEEEEECTTTCCEEEEEEE
T ss_pred             EEEEEEeCCCCCCCEEEEEE
Confidence             333333 345566655444

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.72  E-value=4.2e-08  Score=84.79  Aligned_cols=137  Identities=23%  Similarity=0.279  Sum_probs=100.2

Q ss_pred             HHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccc
Q 017476          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG  258 (371)
Q Consensus       179 lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~  258 (371)
                      |++.+++.+    ...+++.++|..+|.|..+..+.+.   +++|+|+|.++++++.|++.     ...++.++++++-+
T Consensus         6 ll~Evl~~l----~~~~g~~~vD~T~G~GGhs~~iL~~---~~~viaiD~D~~ai~~a~~~-----~~~~~~~~~~~f~~   73 (182)
T d1wg8a2           6 LYQEALDLL----AVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKGL-----HLPGLTVVQGNFRH   73 (182)
T ss_dssp             THHHHHHHH----TCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHT-----CCTTEEEEESCGGG
T ss_pred             HHHHHHHhc----CCCCCCEEEEeCCCCcHHHHHHhcc---cCcEEEEhhhhhHHHHHhhc-----cccceeEeehHHHH
Confidence            456666666    3456789999999999999999874   57999999999999888753     23579999998754


Q ss_pred             ccc---c-CCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCc
Q 017476          259 KLK---D-VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQ  334 (371)
Q Consensus       259 ~l~---~-~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q  334 (371)
                      ...   . ..+.+|.|+.+.-+...      +           ++....|++.....++.+...|++||.+++.......
T Consensus        74 ~~~~l~~~~~~~vdgIl~DLGvSs~------q-----------ld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~E  136 (182)
T d1wg8a2          74 LKRHLAALGVERVDGILADLGVSSF------H-----------LDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLE  136 (182)
T ss_dssp             HHHHHHHTTCSCEEEEEEECSCCHH------H-----------HHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHH
T ss_pred             HHHHHHHcCCCccCEEEEEccCCHH------H-----------hhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccch
Confidence            211   1 13679999997654211      1           1122457888889999999999999999988843333


Q ss_pred             HHHHHHHHhc
Q 017476          335 CKFLKNYLEN  344 (371)
Q Consensus       335 ~~~v~~~l~~  344 (371)
                      ...+.+++++
T Consensus       137 d~ivk~~~~e  146 (182)
T d1wg8a2         137 DRVVKRFLRE  146 (182)
T ss_dssp             HHHHHHHHHH
T ss_pred             hHHHHHHHhh
Confidence            3457777775

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=2.6e-08  Score=91.69  Aligned_cols=89  Identities=16%  Similarity=0.245  Sum_probs=71.8

Q ss_pred             HHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccc
Q 017476          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG  258 (371)
Q Consensus       179 lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~  258 (371)
                      +++.+.+..    +..++..|||+|+|.|+++..+++.   +.+|++||+++..++..+++...+...++++++.+|+.+
T Consensus         9 i~~kIv~~~----~~~~~d~VlEIGPG~G~LT~~Ll~~---~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~   81 (278)
T d1zq9a1           9 IINSIIDKA----ALRPTDVVLEVGPGTGNMTVKLLEK---AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLK   81 (278)
T ss_dssp             HHHHHHHHT----CCCTTCEEEEECCTTSTTHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTT
T ss_pred             HHHHHHHHh----CCCCCCEEEEECCCchHHHHHHHhc---CCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhh
Confidence            455555544    3345679999999999999999986   369999999999999999988776666789999999987


Q ss_pred             ccccCCCceeEEEEcCCCC
Q 017476          259 KLKDVEGKLSGVVSNPPYI  277 (371)
Q Consensus       259 ~l~~~~~~fDlIvsNPPYi  277 (371)
                      ...   ..++.||+|.||.
T Consensus        82 ~~~---~~~~~vV~NLPY~   97 (278)
T d1zq9a1          82 TDL---PFFDTCVANLPYQ   97 (278)
T ss_dssp             SCC---CCCSEEEEECCGG
T ss_pred             hhh---hhhhhhhcchHHH
Confidence            532   3567899999994

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.69  E-value=3.8e-08  Score=88.77  Aligned_cols=125  Identities=17%  Similarity=0.111  Sum_probs=88.3

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCC
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP  275 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPP  275 (371)
                      ..+|+|+|||+|..++.+++++ |+.+++.+|+.+ .++       .....++++++.+|++++++.    .|+++.   
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp~-vi~-------~~~~~~r~~~~~~d~~~~~P~----ad~~~l---  145 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKY-PTIKGINFDLPH-VIE-------DAPSYPGVEHVGGDMFVSIPK----ADAVFM---  145 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHC-TTSEEEEEECTT-TTT-------TCCCCTTEEEEECCTTTCCCC----CSCEEC---
T ss_pred             CcEEEEecCCCcHHHHHHHHHC-CCCeEEEcccHH-hhh-------hcccCCceEEecccccccCCC----cceEEE---
Confidence            4689999999999999999996 999999999965 332       233456899999999887653    233332   


Q ss_pred             CCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC-------------------------
Q 017476          276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN-------------------------  330 (371)
Q Consensus       276 Yi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~-------------------------  330 (371)
                         ...++.       |           .-+....+++++.+.|+|||.+++.-.                         
T Consensus       146 ---~~vlh~-------~-----------~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~  204 (243)
T d1kyza2         146 ---KWICHD-------W-----------SDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAH  204 (243)
T ss_dssp             ---SSSSTT-------S-----------CHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHH
T ss_pred             ---EEEeec-------C-----------CHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhh
Confidence               111111       1           134566899999999999998777311                         


Q ss_pred             ---C-cCcHHHHHHHHhccccCCceeEEEEecCC
Q 017476          331 ---G-EKQCKFLKNYLENDSACSFCNVSIVSDFA  360 (371)
Q Consensus       331 ---~-~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~  360 (371)
                         | .+..++.++++++   +||+.++++.-..
T Consensus       205 ~~~g~ert~~e~~~ll~~---AGf~~vkv~~~~~  235 (243)
T d1kyza2         205 NPGGKERTQKEFEDLAKG---AGFQGFKVHCNAF  235 (243)
T ss_dssp             CSSCCCEEHHHHHHHHHH---HCCSCEEEEEEET
T ss_pred             CCCCCcCCHHHHHHHHHH---cCCCcEEEEEeCC
Confidence               1 1235567778875   7899999886543

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.69  E-value=7.7e-08  Score=89.06  Aligned_cols=152  Identities=18%  Similarity=0.226  Sum_probs=102.3

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc---CCCCcEEEEEcCcccccccC-CCceeEE
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY---GLQDIIEIRQGSWFGKLKDV-EGKLSGV  270 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~---gl~~~v~~~~gD~~~~l~~~-~~~fDlI  270 (371)
                      .+++||=+|-|.|.++..+.+. .+..+|++||++++.++.|++....+   .-.++++++.+|..+.+... +++||+|
T Consensus        80 ~pk~VLiiGgG~G~~~r~~l~~-~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI  158 (290)
T d1xj5a_          80 NPKKVLVIGGGDGGVLREVARH-ASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  158 (290)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCcceEEecCCchHHHHHHHhc-ccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence            5679999999999999999885 35569999999999999999865332   12467999999998877543 4589999


Q ss_pred             EEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCc-CcHHHHHHHHhccccCC
Q 017476          271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGE-KQCKFLKNYLENDSACS  349 (371)
Q Consensus       271 vsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~-~q~~~v~~~l~~~~~~g  349 (371)
                      +.+.+- +..             +...|.        -+++++.+.+.|+|||++++..+.. .+.+.+..+++... .-
T Consensus       159 i~D~~d-p~~-------------~~~~L~--------t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~-~v  215 (290)
T d1xj5a_         159 IVDSSD-PIG-------------PAKELF--------EKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCR-EI  215 (290)
T ss_dssp             EECCCC-TTS-------------GGGGGG--------SHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHH-HH
T ss_pred             EEcCCC-CCC-------------cchhhC--------CHHHHHHHHHhcCCCcEEEEecCCcHHHHHHHHHHHhhhh-hh
Confidence            997542 110             001111        2368888999999999999987433 23444444444321 22


Q ss_pred             ceeEEE-----EecC-CCCceEEEEEe
Q 017476          350 FCNVSI-----VSDF-AGIQRFVTGFR  370 (371)
Q Consensus       350 f~~v~~-----~~Dl-~g~~R~~~a~~  370 (371)
                      |..+..     .+-+ +|..=|++|.+
T Consensus       216 F~~~~~y~~~~vPty~~g~w~f~~as~  242 (290)
T d1xj5a_         216 FKGSVNYAWTSVPTYPSGVIGFMLCST  242 (290)
T ss_dssp             CSSCEEEEEEECTTSGGGEEEEEEEEC
T ss_pred             cccceeEeeEeeeeecCCceEEEEEeC
Confidence            433322     2222 35666776654

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.63  E-value=1.6e-07  Score=81.56  Aligned_cols=111  Identities=19%  Similarity=0.233  Sum_probs=71.6

Q ss_pred             CCCeEEEECCcccH----HHHHHHHHhC---CCcEEEEEeCCHHHHHHHHHHH--------------HHc----CC----
Q 017476          195 RDGFWVDLGTGSGA----IAIGIARVLG---SKGSIIAVDLNPLAAAVAAFNA--------------QRY----GL----  245 (371)
Q Consensus       195 ~~~~VLDlG~GsG~----~al~la~~~~---~~~~V~gvDis~~al~~A~~n~--------------~~~----gl----  245 (371)
                      ++.+|++.|||||-    +++.+.....   ...+|+|+|+|+.+++.|++..              .++    +.    
T Consensus        24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~  103 (193)
T d1af7a2          24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  103 (193)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence            35699999999997    4444443321   2358999999999999998532              111    00    


Q ss_pred             --------CCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhc
Q 017476          246 --------QDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTAS  317 (371)
Q Consensus       246 --------~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~  317 (371)
                              ...+.+...+.........++||+|+|      .+.+..+++                  +.-+++++...+
T Consensus       104 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~C------RNVLiYf~~------------------~~~~~vl~~l~~  159 (193)
T d1af7a2         104 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFC------RNVMIYFDK------------------TTQEDILRRFVP  159 (193)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEE------CSSGGGSCH------------------HHHHHHHHHHGG
T ss_pred             eeehHHHHHHHHHHhhhhccccccCCCCCccEEEe------ehhHHhcCH------------------HHHHHHHHHHHH
Confidence                    022456666655443333578999999      222222222                  234589999999


Q ss_pred             ccccCcEEEEEE
Q 017476          318 MLKPGGFFAFET  329 (371)
Q Consensus       318 ~LkpgG~lvle~  329 (371)
                      .|+|||+|++-+
T Consensus       160 ~L~pGG~L~lG~  171 (193)
T d1af7a2         160 LLKPDGLLFAGH  171 (193)
T ss_dssp             GEEEEEEEEECT
T ss_pred             HhCCCcEEEEec
Confidence            999999988755

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.55  E-value=3.3e-09  Score=96.16  Aligned_cols=80  Identities=15%  Similarity=0.211  Sum_probs=63.5

Q ss_pred             CCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEE
Q 017476          193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS  272 (371)
Q Consensus       193 ~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvs  272 (371)
                      ..++.+|||+|||+|+++..+++.   ..+|+|||+++.+++.++++..   ...+++++++|+.+.- .....++.||+
T Consensus        27 ~~~~d~VLEIGpG~G~LT~~L~~~---~~~v~aIE~D~~l~~~l~~~~~---~~~n~~ii~~D~l~~~-~~~~~~~~vv~   99 (245)
T d1yuba_          27 LKETDTVYEIGTGKGHLTTKLAKI---SKQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDILQFQ-FPNKQRYKIVG   99 (245)
T ss_dssp             CCSSEEEEECSCCCSSCSHHHHHH---SSEEEESSSSCSSSSSSSCTTT---TCSEEEECCSCCTTTT-CCCSSEEEEEE
T ss_pred             CCCCCeEEEECCCccHHHHHHHhh---cCceeEeeecccchhhhhhhhh---hccchhhhhhhhhccc-cccceeeeEee
Confidence            335679999999999999999986   3699999999999888776543   2346999999998742 22357889999


Q ss_pred             cCCCCCC
Q 017476          273 NPPYIPS  279 (371)
Q Consensus       273 NPPYi~~  279 (371)
                      |.||.-+
T Consensus       100 NLPY~Is  106 (245)
T d1yuba_         100 NIPYHLS  106 (245)
T ss_dssp             ECCSSSC
T ss_pred             eeehhhh
Confidence            9999643

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.33  E-value=3e-07  Score=83.23  Aligned_cols=91  Identities=18%  Similarity=0.185  Sum_probs=66.1

Q ss_pred             HHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcc
Q 017476          178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF  257 (371)
Q Consensus       178 ~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~  257 (371)
                      .+++.+.+.+    ...++..|||+|||.|.++..+++.   ..+|++||+++..++..++...   ..++++++.+|+.
T Consensus         8 ~~~~~Iv~~~----~~~~~d~vlEIGpG~G~LT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~---~~~~~~ii~~D~l   77 (252)
T d1qyra_           8 FVIDSIVSAI----NPQKGQAMVEIGPGLAALTEPVGER---LDQLTVIELDRDLAARLQTHPF---LGPKLTIYQQDAM   77 (252)
T ss_dssp             HHHHHHHHHH----CCCTTCCEEEECCTTTTTHHHHHTT---CSCEEEECCCHHHHHHHHTCTT---TGGGEEEECSCGG
T ss_pred             HHHHHHHHhc----CCCCCCEEEEECCCchHHHHHHHcc---CCceEEEEeccchhHHHHHHhh---hccchhHHhhhhh
Confidence            3455555555    3345678999999999999999985   4689999999999998876432   2346999999997


Q ss_pred             ccccc----CCCceeEEEEcCCCCC
Q 017476          258 GKLKD----VEGKLSGVVSNPPYIP  278 (371)
Q Consensus       258 ~~l~~----~~~~fDlIvsNPPYi~  278 (371)
                      +....    ..++--.||+|.||.-
T Consensus        78 ~~~~~~~~~~~~~~~~vvgNlPY~I  102 (252)
T d1qyra_          78 TFNFGELAEKMGQPLRVFGNLPYNI  102 (252)
T ss_dssp             GCCHHHHHHHHTSCEEEEEECCTTT
T ss_pred             hhcccccccccCCCeEEEecchHHH
Confidence            63211    0123347999999963

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=98.19  E-value=1.1e-06  Score=79.13  Aligned_cols=81  Identities=22%  Similarity=0.174  Sum_probs=67.8

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC--------CCcEEEEEcCcccccccCCCce
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGL--------QDIIEIRQGSWFGKLKDVEGKL  267 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl--------~~~v~~~~gD~~~~l~~~~~~f  267 (371)
                      ..+|||+.+|.|..+..+|..   +.+|+++|.++....+.+.++++...        ..+++++++|..+.+....+.|
T Consensus        89 ~~~VlD~TaGlG~Da~vlA~~---G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~  165 (250)
T d2oyra1          89 LPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRP  165 (250)
T ss_dssp             CCCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCC
T ss_pred             CCEEEECCCcccHHHHHHHhC---CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCC
Confidence            348999999999999999985   47899999999998888887765432        2379999999888777666789


Q ss_pred             eEEEEcCCCCCC
Q 017476          268 SGVVSNPPYIPS  279 (371)
Q Consensus       268 DlIvsNPPYi~~  279 (371)
                      |+|+.+|+|-..
T Consensus       166 DvIYlDPMFp~~  177 (250)
T d2oyra1         166 QVVYLDPMFPHK  177 (250)
T ss_dssp             SEEEECCCCCCC
T ss_pred             CEEEECCCCccc
Confidence            999999999644

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.08  E-value=6.3e-06  Score=73.39  Aligned_cols=136  Identities=18%  Similarity=0.276  Sum_probs=82.2

Q ss_pred             CceeeE-eecccccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHH---hCCCcE
Q 017476          147 KPFQYL-VGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARV---LGSKGS  222 (371)
Q Consensus       147 ~P~~yi-~g~~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~---~~~~~~  222 (371)
                      ..+.|. .....|.|...       +.-|..-.+.+.++..+       +|++|||+|++.|.-++.++..   .+++++
T Consensus        45 ~~~~~~~~~~~~w~G~p~-------~k~p~d~~~~~eli~~~-------KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~k  110 (232)
T d2bm8a1          45 RDLGYSDFSPYQWRGLRM-------LKDPDTQAVYHDMLWEL-------RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQ  110 (232)
T ss_dssp             CSCSSCCSSCCEETTEEC-------CSCHHHHHHHHHHHHHH-------CCSEEEEECCTTSHHHHHHHHHHHHTTCCCE
T ss_pred             hhcCcccCcCccccceec-------ccCHHHHHHHHHHHHHh-------CCCEEEEECCCCchHHHHHHHHHHhcCCCce
Confidence            344444 12345556543       33455556666666655       4779999999999888777653   346789


Q ss_pred             EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccc--cccC-CCceeEEEEcCCCCCCCCcccchhhhcccCcccccc
Q 017476          223 IIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK--LKDV-EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALD  299 (371)
Q Consensus       223 V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~--l~~~-~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~  299 (371)
                      |+|+|+++.....+..      ..++++++++|..+.  +... ...+|+|+.+     .           .|.      
T Consensus       111 I~giDId~~~~~~~~~------~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID-----~-----------~H~------  162 (232)
T d2bm8a1         111 VIGIDRDLSRCQIPAS------DMENITLHQGDCSDLTTFEHLREMAHPLIFID-----N-----------AHA------  162 (232)
T ss_dssp             EEEEESCCTTCCCCGG------GCTTEEEEECCSSCSGGGGGGSSSCSSEEEEE-----S-----------SCS------
T ss_pred             EEecCcChhhhhhhhc------cccceeeeecccccHHHHHHHHhcCCCEEEEc-----C-----------Ccc------
Confidence            9999998754332221      235699999997543  1111 2357777652     0           111      


Q ss_pred             CCCCcHHHHHHHHHHHhcccccCcEEEEEEC
Q 017476          300 GGVDGLDYLLHLCNGTASMLKPGGFFAFETN  330 (371)
Q Consensus       300 gg~dGl~~~~~il~~a~~~LkpgG~lvle~~  330 (371)
                          -...+..+ . ....|++||++++|-.
T Consensus       163 ----~~~v~~~~-~-~~~lLk~GG~iIveD~  187 (232)
T d2bm8a1         163 ----NTFNIMKW-A-VDHLLEEGDYFIIEDM  187 (232)
T ss_dssp             ----SHHHHHHH-H-HHHTCCTTCEEEECSC
T ss_pred             ----hHHHHHHH-H-HhcccCcCCEEEEEcC
Confidence                11122222 2 2469999999999873

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.60  E-value=3.1e-05  Score=69.10  Aligned_cols=138  Identities=12%  Similarity=0.099  Sum_probs=75.7

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN  273 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN  273 (371)
                      .+..+|+|||||.|..+..++... +...|.|+++--.-.+ .-.....++. +-+++...+-...+.  .+..|+|+|+
T Consensus        65 ~~~~~vvDlG~~pGgws~~~a~~~-~v~~V~g~~iG~d~~e-~P~~~~~~~~-ni~~~~~~~dv~~l~--~~~~D~vlcD  139 (257)
T d2p41a1          65 TPEGKVVDLGCGRGGWSYYCGGLK-NVREVKGLTKGGPGHE-EPIPMSTYGW-NLVRLQSGVDVFFIP--PERCDTLLCD  139 (257)
T ss_dssp             CCCEEEEEETCTTSHHHHHHHTST-TEEEEEEECCCSTTSC-CCCCCCSTTG-GGEEEECSCCTTTSC--CCCCSEEEEC
T ss_pred             cCCCeEEEecCCCChHHHHHHhhc-CCCceeEEEecCcccc-CCcccccccc-ccccchhhhhHHhcC--CCcCCEEEee
Confidence            356689999999999999998752 4567888887321100 0000011111 235666555433333  3689999996


Q ss_pred             CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeE
Q 017476          274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNV  353 (371)
Q Consensus       274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v  353 (371)
                      --  ++    .-.+++.              -.-..++++.+.++|+|||.+++-+-... .+.+.+.|+.. +..|...
T Consensus       140 m~--es----s~~~~vd--------------~~Rtl~vLela~~wLk~gg~FvvKVl~py-~~~v~e~le~l-q~~fgg~  197 (257)
T d2p41a1         140 IG--ES----SPNPTVE--------------AGRTLRVLNLVENWLSNNTQFCVKVLNPY-MSSVIEKMEAL-QRKHGGA  197 (257)
T ss_dssp             CC--CC----CSSHHHH--------------HHHHHHHHHHHHHHCCTTCEEEEEESCCC-SHHHHHHHHHH-HHHHCCE
T ss_pred             CC--CC----CCCchhh--------------hhhHHHHHHHHHHHcccCCEEEEEECCCC-ChHHHHHHHHH-HHHhCCe
Confidence            20  00    0011110              01122678888999999999999874322 34454444432 1225444


Q ss_pred             EEEec
Q 017476          354 SIVSD  358 (371)
Q Consensus       354 ~~~~D  358 (371)
                      .+...
T Consensus       198 lVR~P  202 (257)
T d2p41a1         198 LVRNP  202 (257)
T ss_dssp             EECCT
T ss_pred             eEcCC
Confidence            44443

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.38  E-value=0.00047  Score=63.74  Aligned_cols=76  Identities=9%  Similarity=-0.011  Sum_probs=54.5

Q ss_pred             HHHHHHHHHhh--hcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcC
Q 017476          178 LMVDLVSDVLV--RDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGS  255 (371)
Q Consensus       178 ~lv~~~~~~~~--~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD  255 (371)
                      .+++.+++.+.  .......+..|||+|.|.|.++..+.+.. ...+|+++|+++..++..++...    .++++++.+|
T Consensus        24 ~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~-~~~~v~~iE~D~~~~~~L~~~~~----~~~~~ii~~D   98 (322)
T d1i4wa_          24 TVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKY-CPRQYSLLEKRSSLYKFLNAKFE----GSPLQILKRD   98 (322)
T ss_dssp             HHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHH-CCSEEEEECCCHHHHHHHHHHTT----TSSCEEECSC
T ss_pred             HHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHhcc----CCCcEEEeCc
Confidence            34555555441  11122246689999999999999999864 23589999999999988776532    2469999999


Q ss_pred             ccc
Q 017476          256 WFG  258 (371)
Q Consensus       256 ~~~  258 (371)
                      .+.
T Consensus        99 ~l~  101 (322)
T d1i4wa_          99 PYD  101 (322)
T ss_dssp             TTC
T ss_pred             hhh
Confidence            864

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=97.30  E-value=0.0035  Score=56.34  Aligned_cols=75  Identities=17%  Similarity=0.220  Sum_probs=57.4

Q ss_pred             eEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCC
Q 017476          198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYI  277 (371)
Q Consensus       198 ~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi  277 (371)
                      +|+||.||.|.+.+.+-+.  .--.+.++|+++.+.+..+.|.     +  -.++.+|+.+.........|+++.-||+-
T Consensus         2 k~~~lF~G~Gg~~~gl~~a--G~~~~~a~e~d~~a~~~~~~N~-----~--~~~~~~Di~~~~~~~~~~~dll~~g~PCq   72 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNH-----S--AKLIKGDISKISSDEFPKCDGIIGGPPCQ   72 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHH--TCEEEEEEECCHHHHHHHHHHC-----C--SEEEESCTTTSCGGGSCCCSEEEECCCCT
T ss_pred             eEEEeCcCcCHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHC-----C--CCCccCChhhCCHhHcccccEEeeccccc
Confidence            7999999999999988775  2335669999999999888874     2  35678998764333235799999999987


Q ss_pred             CCCC
Q 017476          278 PSDD  281 (371)
Q Consensus       278 ~~~~  281 (371)
                      +.+.
T Consensus        73 ~fS~   76 (324)
T d1dcta_          73 SWSE   76 (324)
T ss_dssp             TTSS
T ss_pred             cccc
Confidence            6543

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=97.21  E-value=0.00017  Score=63.28  Aligned_cols=87  Identities=20%  Similarity=0.240  Sum_probs=56.0

Q ss_pred             EEEEcCcccccccC-CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476          250 EIRQGSWFGKLKDV-EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE  328 (371)
Q Consensus       250 ~~~~gD~~~~l~~~-~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle  328 (371)
                      ++++||.++.+..+ ++++|+|+.+|||....+...      .....      .+=++.+..+++++.+.|+|||.+++.
T Consensus         6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d------~~~~~------~~y~~~~~~~~~e~~rvLk~~g~~~~~   73 (256)
T d1g60a_           6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWD------SFDSH------NEFLAFTYRWIDKVLDKLDKDGSLYIF   73 (256)
T ss_dssp             SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGG------CCSSH------HHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCc------CCCCH------HHHHHHHHHHHHHhhhccccCcccccc
Confidence            48899988765543 478999999999964321100      00000      011345667889999999999999877


Q ss_pred             ECCcCcHHHHHHHHhccccCCcee
Q 017476          329 TNGEKQCKFLKNYLENDSACSFCN  352 (371)
Q Consensus       329 ~~~~~q~~~v~~~l~~~~~~gf~~  352 (371)
                      . .......+...+.+   .||..
T Consensus        74 ~-~~~~~~~~~~~~~~---~g~~~   93 (256)
T d1g60a_          74 N-TPFNCAFICQYLVS---KGMIF   93 (256)
T ss_dssp             E-CHHHHHHHHHHHHH---TTCEE
T ss_pred             c-Cchhhhhhhhhhhc---cccee
Confidence            7 34455566666664   55653

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=97.18  E-value=0.0024  Score=57.98  Aligned_cols=77  Identities=12%  Similarity=0.091  Sum_probs=57.2

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP  274 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP  274 (371)
                      .+.+|+||+||.|.+.+.+.+.  .--.|.++|+++.|++..+.|..     +   ..++|+.+........+|+|+.-|
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~a--G~~~v~a~e~d~~a~~~~~~N~~-----~---~~~~Di~~~~~~~~~~~Dll~ggp   79 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFG-----E---KPEGDITQVNEKTIPDHDILCAGF   79 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHS-----C---CCBSCGGGSCGGGSCCCSEEEEEC
T ss_pred             CCCeEEEECccccHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHCC-----C---CCcCchhcCchhhcceeeeeeccc
Confidence            4679999999999999998764  23356789999999999998862     1   124777553332235799999999


Q ss_pred             CCCCCCC
Q 017476          275 PYIPSDD  281 (371)
Q Consensus       275 PYi~~~~  281 (371)
                      |+-+-+.
T Consensus        80 PCq~fS~   86 (327)
T d2c7pa1          80 PCQAFSI   86 (327)
T ss_dssp             CCTTTCT
T ss_pred             ccchhhh
Confidence            9876543

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.003  Score=57.34  Aligned_cols=78  Identities=17%  Similarity=0.210  Sum_probs=53.2

Q ss_pred             CCeEEEECCcccHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc-C-CCceeEEEE
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-V-EGKLSGVVS  272 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~~~~-~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~-~-~~~fDlIvs  272 (371)
                      +.+|+||+||.|.+.+.+-+. +-+. -|.++|+++.+++..+.|.     + ...++.+|..+.... . ...+|+++.
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~a-G~~~~~~~a~E~~~~a~~~~~~n~-----~-~~~~~~~di~~~~~~~~~~~~~Dll~g   74 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNF-----P-HTQLLAKTIEGITLEEFDRLSFDMILM   74 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHC-----T-TSCEECSCGGGCCHHHHHHHCCSEEEE
T ss_pred             CCEEEEcCcCccHHHHHHHHc-CCCCeEEEEEECCHHHHHHHHHHC-----C-CCCcccCchhhCCHhHcCCCCccEEEe
Confidence            458999999999999888664 2223 3779999999999888874     2 256677777543211 1 136899999


Q ss_pred             cCCCCCCC
Q 017476          273 NPPYIPSD  280 (371)
Q Consensus       273 NPPYi~~~  280 (371)
                      -||+-+.+
T Consensus        75 gpPCq~fS   82 (343)
T d1g55a_          75 SPPCQPFT   82 (343)
T ss_dssp             CCC-----
T ss_pred             eccccccc
Confidence            99986543

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=96.90  E-value=0.0011  Score=57.91  Aligned_cols=60  Identities=20%  Similarity=0.251  Sum_probs=48.5

Q ss_pred             chHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 017476          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (371)
Q Consensus       174 p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~  241 (371)
                      +--..|++.+++.. .    .++..|||..||||..++++.+.   +-+.+|+|++++.+++|++++.
T Consensus       196 ~kP~~L~~~lI~~~-s----~~gd~VlDpF~GSGTT~~aa~~~---~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         196 PKPRDLIERIIRAS-S----NPNDLVLDCFMGSGTTAIVAKKL---GRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             CCCHHHHHHHHHHH-C----CTTCEEEESSCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHh-C----CCCCEEEECCCCchHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHc
Confidence            33356777777766 2    34679999999999999888773   5799999999999999999874

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.72  E-value=0.0018  Score=57.15  Aligned_cols=64  Identities=16%  Similarity=0.128  Sum_probs=51.3

Q ss_pred             ccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc
Q 017476          172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY  243 (371)
Q Consensus       172 Prp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~  243 (371)
                      |.+--..|++.+++.. .    .++..|||..+|||..++++.+.   +-+.+|+|++++..+.|++++...
T Consensus       189 p~~kP~~L~~~~I~~~-s----~~gdiVLDpF~GSGTT~~Aa~~l---gR~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         189 PTQKPAAVIERLVRAL-S----HPGSTVLDFFAGSGVTARVAIQE---GRNSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             TTCCCHHHHHHHHHHH-S----CTTCEEEETTCTTCHHHHHHHHH---TCEEEEEESSTHHHHHHHHHHHHC
T ss_pred             ccccchhHHHHHHHhh-c----CCCCEEEecCCCCcHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHh
Confidence            4334456777777765 2    24679999999999999988875   569999999999999999998764

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=96.68  E-value=0.00075  Score=60.81  Aligned_cols=63  Identities=21%  Similarity=0.247  Sum_probs=50.0

Q ss_pred             ccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH
Q 017476          172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (371)
Q Consensus       172 Prp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~  242 (371)
                      |.+-.+.|++.++... .    .++..|||..||||..++++.+.   +-+.+|+|+++++++.|++.+..
T Consensus       232 pt~kP~~L~~rlI~~~-s----~~gdiVlDpF~GSGTT~~AA~~l---gR~~Ig~El~~~y~~~a~~Rl~~  294 (320)
T d1booa_         232 PARFPAKLPEFFIRML-T----EPDDLVVDIFGGSNTTGLVAERE---SRKWISFEMKPEYVAASAFRFLD  294 (320)
T ss_dssp             SSCCCTHHHHHHHHHH-C----CTTCEEEETTCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHGGGSC
T ss_pred             CCcCchHHHHHhhhhc-c----cCCCEEEecCCCCcHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHHHh
Confidence            4444457788877765 2    25679999999999999988773   67999999999999999887643

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=96.61  E-value=0.00095  Score=60.09  Aligned_cols=70  Identities=20%  Similarity=0.309  Sum_probs=48.4

Q ss_pred             EEEEEcCcccccccC-CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEE
Q 017476          249 IEIRQGSWFGKLKDV-EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF  327 (371)
Q Consensus       249 v~~~~gD~~~~l~~~-~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvl  327 (371)
                      =.+++||.++.+..+ ++++|+|+.+|||....+...-..   .+         .+=++.+...+..+.+.|+++|.+++
T Consensus        13 ~~l~~GD~le~l~~l~~~sVdli~tDPPY~~~~~~~~~~~---~~---------~~y~~~~~~~l~~~~rvLk~~G~i~i   80 (320)
T d1booa_          13 GSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNL---EQ---------HEYVDWFLSFAKVVNKKLKPDGSFVV   80 (320)
T ss_dssp             EEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSC---HH---------HHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CEEEehhHHHHHhhCccCCCCEEEECCCCcCCCCCCCCCC---CH---------HHHHHHHHHHHHHHHHhCcccCcccc
Confidence            489999988765543 478999999999974322110000   00         01145567889999999999999999


Q ss_pred             EEC
Q 017476          328 ETN  330 (371)
Q Consensus       328 e~~  330 (371)
                      .+.
T Consensus        81 ~~~   83 (320)
T d1booa_          81 DFG   83 (320)
T ss_dssp             EEC
T ss_pred             ccc
Confidence            774

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.0081  Score=53.06  Aligned_cols=95  Identities=13%  Similarity=0.083  Sum_probs=68.2

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cC
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DV  263 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~  263 (371)
                      .+++.+|=.|+++| ++.++|+.+ ..+.+|+.+|.+++.++.+.+.++..+...++.+++.|+.+.-.         ..
T Consensus         8 lk~Kv~lITGas~G-IG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~   86 (257)
T d1xg5a_           8 WRDRLALVTGASGG-IGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ   86 (257)
T ss_dssp             GTTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence            35678888887766 344444432 24689999999999999988888888777789999999865311         11


Q ss_pred             CCceeEEEEcCCCCCCCCcccchhhh
Q 017476          264 EGKLSGVVSNPPYIPSDDISGLQVEV  289 (371)
Q Consensus       264 ~~~fDlIvsNPPYi~~~~~~~l~~ev  289 (371)
                      .++.|++|.|..+.....+..++.+.
T Consensus        87 ~g~iD~lVnnAg~~~~~~~~~~~~~~  112 (257)
T d1xg5a_          87 HSGVDICINNAGLARPDTLLSGSTSG  112 (257)
T ss_dssp             HCCCSEEEECCCCCCCCCTTTCCHHH
T ss_pred             cCCCCEEEecccccCCCccccccHHH
Confidence            36899999998776666555555443

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.22  E-value=0.0042  Score=51.71  Aligned_cols=100  Identities=25%  Similarity=0.373  Sum_probs=64.1

Q ss_pred             CCCCCCeEEEECCcc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccC--CCcee
Q 017476          192 DGLRDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV--EGKLS  268 (371)
Q Consensus       192 ~~~~~~~VLDlG~Gs-G~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~--~~~fD  268 (371)
                      +..++.+|+=+|||. |..++.+++.+ ...+|+++|.+++-++.|++    .|...-+.....++.+.+...  ...+|
T Consensus        24 ~~~~g~~VlI~GaG~vGl~~~q~ak~~-Ga~~Vi~~d~~~~r~~~a~~----lGa~~~i~~~~~~~~~~v~~~t~g~G~D   98 (174)
T d1jqba2          24 DIEMGSSVVVIGIGAVGLMGIAGAKLR-GAGRIIGVGSRPICVEAAKF----YGATDILNYKNGHIEDQVMKLTNGKGVD   98 (174)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHTT-TCSCEEEECCCHHHHHHHHH----HTCSEEECGGGSCHHHHHHHHTTTSCEE
T ss_pred             CCCCCCEEEEEcCCcchhhhhhhhhcc-cccccccccchhhhHHHHHh----hCccccccccchhHHHHHHHHhhccCcc
Confidence            344677888899986 88888889865 33479999999999888864    454321212222232222111  23499


Q ss_pred             EEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476          269 GVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE  328 (371)
Q Consensus       269 lIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle  328 (371)
                      +|+-.-.-                         .       ..++.+.+.++|+|.+++.
T Consensus        99 ~vid~~g~-------------------------~-------~~~~~a~~~~~~~G~iv~~  126 (174)
T d1jqba2          99 RVIMAGGG-------------------------S-------ETLSQAVKMVKPGGIISNI  126 (174)
T ss_dssp             EEEECSSC-------------------------T-------THHHHHHHHEEEEEEEEEC
T ss_pred             eEEEccCC-------------------------H-------HHHHHHHHHHhcCCEEEEE
Confidence            98863110                         0       3456677899999999885

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.06  E-value=0.015  Score=47.65  Aligned_cols=73  Identities=11%  Similarity=-0.058  Sum_probs=48.9

Q ss_pred             CCCCCCeEEEECCc-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEE
Q 017476          192 DGLRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGV  270 (371)
Q Consensus       192 ~~~~~~~VLDlG~G-sG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlI  270 (371)
                      ...++.+|+-+|+| .|.+++.+++.+  +++|+++|.+++.++.|++    +|...  .+...+-.+......+.+|+|
T Consensus        24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~--G~~vi~~~~~~~k~~~a~~----lGa~~--~i~~~~~~~~~~~~~~~~d~v   95 (168)
T d1piwa2          24 GCGPGKKVGIVGLGGIGSMGTLISKAM--GAETYVISRSSRKREDAMK----MGADH--YIATLEEGDWGEKYFDTFDLI   95 (168)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHH----HTCSE--EEEGGGTSCHHHHSCSCEEEE
T ss_pred             CcCCCCEEEEECCCCcchhHHHHhhhc--cccccccccchhHHHHhhc----cCCcE--EeeccchHHHHHhhhcccceE
Confidence            34567899999998 778888888875  5799999999998888775    45431  121111111122224679988


Q ss_pred             EE
Q 017476          271 VS  272 (371)
Q Consensus       271 vs  272 (371)
                      +.
T Consensus        96 i~   97 (168)
T d1piwa2          96 VV   97 (168)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.99  E-value=0.0024  Score=56.38  Aligned_cols=67  Identities=15%  Similarity=0.213  Sum_probs=48.1

Q ss_pred             EEEEEcCcccccccC-CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEE
Q 017476          249 IEIRQGSWFGKLKDV-EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF  327 (371)
Q Consensus       249 v~~~~gD~~~~l~~~-~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvl  327 (371)
                      -.++.||.++.+..+ ++++|+|+.+|||-....         .+      ....+-++....+++++.+.||+||.+++
T Consensus         5 ~~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~---------~~------~~~~~y~~~~~~~~~e~~rvLk~~G~~~~   69 (279)
T d1eg2a_           5 HVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLA---------DW------DDHMDYIGWAKRWLAEAERVLSPTGSIAI   69 (279)
T ss_dssp             EEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGG---------GG------GTCSSHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ceEEechHHHHHhhCcCCCccEEEECCCCCCCcc---------cc------cCHHHHHHHHHHHHHHHHHHhCCCccEEE
Confidence            457889988765544 478999999999953211         00      11223367778899999999999999999


Q ss_pred             EEC
Q 017476          328 ETN  330 (371)
Q Consensus       328 e~~  330 (371)
                      -..
T Consensus        70 ~~~   72 (279)
T d1eg2a_          70 FGG   72 (279)
T ss_dssp             EEC
T ss_pred             ecC
Confidence            763

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.95  E-value=0.0063  Score=51.63  Aligned_cols=113  Identities=19%  Similarity=0.166  Sum_probs=66.8

Q ss_pred             CCCCCCeEEEECCcc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE---EcCcccccccC--CC
Q 017476          192 DGLRDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIR---QGSWFGKLKDV--EG  265 (371)
Q Consensus       192 ~~~~~~~VLDlG~Gs-G~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~---~gD~~~~l~~~--~~  265 (371)
                      ...++.+||-+|||. |.+++.+++.. ...+|+++|.++..++.|++.    |..   .++   ..|+.+.+...  ..
T Consensus        22 ~v~~G~tVlV~GaG~vGl~a~~~ak~~-ga~~Vi~~d~~~~rl~~a~~~----Ga~---~~~~~~~~~~~~~i~~~t~g~   93 (195)
T d1kola2          22 GVGPGSTVYVAGAGPVGLAAAASARLL-GAAVVIVGDLNPARLAHAKAQ----GFE---IADLSLDTPLHEQIAALLGEP   93 (195)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHT----TCE---EEETTSSSCHHHHHHHHHSSS
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHhh-cccceeeecccchhhHhhhhc----ccc---EEEeCCCcCHHHHHHHHhCCC
Confidence            445678999999997 66778888875 556999999999999988754    432   222   12222211111  24


Q ss_pred             ceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          266 KLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       266 ~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      .+|+++-.=-. +...   .....       ....+      -...++.+.+.++|||++++.-
T Consensus        94 g~D~vid~vG~-~~~~---~~~~~-------~~~~~------~~~~l~~~~~~~r~gG~v~~~G  140 (195)
T d1kola2          94 EVDCAVDAVGF-EARG---HGHEG-------AKHEA------PATVLNSLMQVTRVAGKIGIPG  140 (195)
T ss_dssp             CEEEEEECCCT-TCBC---SSTTG-------GGSBC------TTHHHHHHHHHEEEEEEEEECS
T ss_pred             CcEEEEECccc-cccC---Ccccc-------eeecC------cHHHHHHHHHHHhcCCEEEEee
Confidence            68988852110 0000   00000       00000      0156778889999999998863

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.94  E-value=0.028  Score=45.74  Aligned_cols=45  Identities=16%  Similarity=0.159  Sum_probs=36.9

Q ss_pred             CCCCCCeEEEECCc-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476          192 DGLRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       192 ~~~~~~~VLDlG~G-sG~~al~la~~~~~~~~V~gvDis~~al~~A~~  238 (371)
                      ...++.+|+-+||| .|.+++.+++..  +++|+++|.+++-++.|++
T Consensus        23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~--Ga~vi~v~~~~~r~~~a~~   68 (170)
T d1e3ja2          23 GVQLGTTVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKN   68 (170)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEEcccccchhhHhhHhhh--cccccccchHHHHHHHHHH
Confidence            34467799999998 677788888874  5799999999999988876

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.73  E-value=0.01  Score=49.11  Aligned_cols=97  Identities=20%  Similarity=0.189  Sum_probs=63.3

Q ss_pred             CCCCCCeEEEECCcc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc---Cccccccc-CCCc
Q 017476          192 DGLRDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG---SWFGKLKD-VEGK  266 (371)
Q Consensus       192 ~~~~~~~VLDlG~Gs-G~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~g---D~~~~l~~-~~~~  266 (371)
                      +..++.+|+=+|||. |..++.+++.+ ....|+.+|.++.-++.|++    .|..   +++..   |+.+.+.. .++.
T Consensus        25 ~~~~g~~VlI~G~G~iG~~~~~~ak~~-g~~~v~~~~~~~~k~~~a~~----~Ga~---~~i~~~~~~~~~~i~~~t~gg   96 (174)
T d1f8fa2          25 KVTPASSFVTWGAGAVGLSALLAAKVC-GASIIIAVDIVESRLELAKQ----LGAT---HVINSKTQDPVAAIKEITDGG   96 (174)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHH-TCSEEEEEESCHHHHHHHHH----HTCS---EEEETTTSCHHHHHHHHTTSC
T ss_pred             CCCCCCEEEEeCCCHHHhhhhhccccc-ccceeeeeccHHHHHHHHHH----cCCe---EEEeCCCcCHHHHHHHHcCCC
Confidence            445677899999974 44677777776 45588999999999888875    3543   23322   23222211 1357


Q ss_pred             eeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476          267 LSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE  328 (371)
Q Consensus       267 fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle  328 (371)
                      +|+|+-.-.                                -...++.+.+.++++|.+++.
T Consensus        97 ~D~vid~~G--------------------------------~~~~~~~~~~~~~~~G~i~~~  126 (174)
T d1f8fa2          97 VNFALESTG--------------------------------SPEILKQGVDALGILGKIAVV  126 (174)
T ss_dssp             EEEEEECSC--------------------------------CHHHHHHHHHTEEEEEEEEEC
T ss_pred             CcEEEEcCC--------------------------------cHHHHHHHHhcccCceEEEEE
Confidence            999885210                                014566778899999999874

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.0072  Score=49.86  Aligned_cols=97  Identities=18%  Similarity=0.143  Sum_probs=63.5

Q ss_pred             CCCCCeEEEECC--cccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc--CCCcee
Q 017476          193 GLRDGFWVDLGT--GSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD--VEGKLS  268 (371)
Q Consensus       193 ~~~~~~VLDlG~--GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~--~~~~fD  268 (371)
                      ..++.+||-.|+  |.|..++.+|+..  +.+|++++.+++.++.+++    .|...-+.....|+.+.+..  ..+.+|
T Consensus        26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~--G~~vi~~~~~~~~~~~~~~----~Ga~~vi~~~~~~~~~~i~~~t~~~g~d   99 (174)
T d1yb5a2          26 VKAGESVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVLQ----NGAHEVFNHREVNYIDKIKKYVGEKGID   99 (174)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSEEEETTSTTHHHHHHHHHCTTCEE
T ss_pred             CCCCCEEEEEecccccccccccccccc--Ccccccccccccccccccc----cCcccccccccccHHHHhhhhhccCCce
Confidence            446779999996  5778888999875  6799999999988777654    56542121122233222211  135699


Q ss_pred             EEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476          269 GVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE  328 (371)
Q Consensus       269 lIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle  328 (371)
                      +|+.+.                             |    ...++.+.+.|+++|.++..
T Consensus       100 ~v~d~~-----------------------------g----~~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2         100 IIIEML-----------------------------A----NVNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             EEEESC-----------------------------H----HHHHHHHHHHEEEEEEEEEC
T ss_pred             EEeecc-----------------------------c----HHHHHHHHhccCCCCEEEEE
Confidence            998620                             0    03456677899999999874

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=95.42  E-value=0.0094  Score=49.50  Aligned_cols=45  Identities=24%  Similarity=0.267  Sum_probs=36.5

Q ss_pred             CCCCCeEEEECCc-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476          193 GLRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       193 ~~~~~~VLDlG~G-sG~~al~la~~~~~~~~V~gvDis~~al~~A~~  238 (371)
                      ..++.+||-+|+| .|.+++.+|+.+ ...+|+++|.+++.++.|++
T Consensus        26 ~~~G~~VlV~GaG~iG~~~~~~ak~~-Ga~~Vi~~~~~~~~~~~a~~   71 (182)
T d1vj0a2          26 SFAGKTVVIQGAGPLGLFGVVIARSL-GAENVIVIAGSPNRLKLAEE   71 (182)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHT-TBSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCccchhheeccccc-cccccccccccccccccccc
Confidence            3467899999998 478888899886 22389999999999998865

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.21  E-value=0.013  Score=47.70  Aligned_cols=44  Identities=20%  Similarity=0.256  Sum_probs=34.8

Q ss_pred             CCCCCeEEEECCc-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476          193 GLRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       193 ~~~~~~VLDlG~G-sG~~al~la~~~~~~~~V~gvDis~~al~~A~~  238 (371)
                      ..++.+|+=+|+| .|.+++.+++..  +.+|+++|.+++.++.+++
T Consensus        25 ~~~g~~VlV~GaG~vG~~~~~~ak~~--G~~Vi~~~~~~~~~~~a~~   69 (166)
T d1llua2          25 ARPGQWVAISGIGGLGHVAVQYARAM--GLHVAAIDIDDAKLELARK   69 (166)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEeeccccHHHHHHHHHHc--CCccceecchhhHHHhhhc
Confidence            4456788889987 466777778875  5799999999999888764

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.00  E-value=0.028  Score=45.96  Aligned_cols=100  Identities=12%  Similarity=0.070  Sum_probs=62.1

Q ss_pred             CCCCCCeEEEECCcc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE-cCcccccc----cCCC
Q 017476          192 DGLRDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ-GSWFGKLK----DVEG  265 (371)
Q Consensus       192 ~~~~~~~VLDlG~Gs-G~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~-gD~~~~l~----~~~~  265 (371)
                      ...++.+|+=+|+|. |.+++.+++.. ...+|+++|.+++-++.|++    .|... +.... .|..+...    ....
T Consensus        23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~-G~~~Vi~~d~~~~rl~~a~~----~Ga~~-~~~~~~~~~~~~~~~~~~~~g~   96 (171)
T d1pl8a2          23 GVTLGHKVLVCGAGPIGMVTLLVAKAM-GAAQVVVTDLSATRLSKAKE----IGADL-VLQISKESPQEIARKVEGQLGC   96 (171)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHH----TTCSE-EEECSSCCHHHHHHHHHHHHTS
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHc-CCceEEeccCCHHHHHHHHH----hCCcc-cccccccccccccccccccCCC
Confidence            344577899999975 45667777765 33489999999999998875    35432 21111 11111000    0124


Q ss_pred             ceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          266 KLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       266 ~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      .+|+|+-.-.                         +       ...++.+.+++++||++++.-
T Consensus        97 g~Dvvid~~G-------------------------~-------~~~~~~a~~~~~~gG~iv~~G  128 (171)
T d1pl8a2          97 KPEVTIECTG-------------------------A-------EASIQAGIYATRSGGTLVLVG  128 (171)
T ss_dssp             CCSEEEECSC-------------------------C-------HHHHHHHHHHSCTTCEEEECS
T ss_pred             CceEEEeccC-------------------------C-------chhHHHHHHHhcCCCEEEEEe
Confidence            6888885210                         0       146677889999999998854

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.34  E-value=0.027  Score=45.88  Aligned_cols=97  Identities=19%  Similarity=0.192  Sum_probs=62.4

Q ss_pred             CCCCCCeEEEECC-c-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccc---ccc--CC
Q 017476          192 DGLRDGFWVDLGT-G-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK---LKD--VE  264 (371)
Q Consensus       192 ~~~~~~~VLDlG~-G-sG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~---l~~--~~  264 (371)
                      +..++.+|+=+|+ | .|.+++.+++.. ...+|+++|.+++-++.+++.    |..   .++..+-.+.   ...  ..
T Consensus        24 ~~~~g~~vlV~G~~G~vG~~~~~~~~~~-g~~~V~~~~~~~~~~~~~~~~----Ga~---~~i~~~~~~~~~~~~~~~~~   95 (170)
T d1jvba2          24 SLDPTKTLLVVGAGGGLGTMAVQIAKAV-SGATIIGVDVREEAVEAAKRA----GAD---YVINASMQDPLAEIRRITES   95 (170)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHH-TCCEEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHHTTT
T ss_pred             CCCCCCEEEEEeccccceeeeeeccccc-ccccccccccchhhHHHHHHc----CCc---eeeccCCcCHHHHHHHHhhc
Confidence            3456779999996 3 566677777775 446999999999998888763    533   2333222121   111  13


Q ss_pred             CceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476          265 GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE  328 (371)
Q Consensus       265 ~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle  328 (371)
                      +.||+|+-.-.                         +       ...++.+.+.++|||.+++.
T Consensus        96 ~~~d~vid~~g-------------------------~-------~~~~~~a~~~l~~~G~iv~~  127 (170)
T d1jvba2          96 KGVDAVIDLNN-------------------------S-------EKTLSVYPKALAKQGKYVMV  127 (170)
T ss_dssp             SCEEEEEESCC-------------------------C-------HHHHTTGGGGEEEEEEEEEC
T ss_pred             ccchhhhcccc-------------------------c-------chHHHhhhhhcccCCEEEEe
Confidence            46998886210                         0       14556677899999998875

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=94.30  E-value=0.19  Score=43.85  Aligned_cols=90  Identities=18%  Similarity=0.135  Sum_probs=61.5

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc----------ccC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL----------KDV  263 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l----------~~~  263 (371)
                      +++++|=-|.++| ++.++|+.+ ..+++|+.+|.+++.++.+.+.+...+  .++.++..|..+.-          ...
T Consensus         7 ~GK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (259)
T d2ae2a_           7 EGCTALVTGGSRG-IGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANHF   83 (259)
T ss_dssp             TTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CCceEEEeeCCCHHHHHHHHHHHHHHh
Confidence            5678887776655 444444433 146799999999999988888877765  35888999986531          112


Q ss_pred             CCceeEEEEcCCCCCCCCcccchh
Q 017476          264 EGKLSGVVSNPPYIPSDDISGLQV  287 (371)
Q Consensus       264 ~~~fDlIvsNPPYi~~~~~~~l~~  287 (371)
                      .++.|++|.|.-+.....+..++.
T Consensus        84 ~~~idilvnnAG~~~~~~~~~~~~  107 (259)
T d2ae2a_          84 HGKLNILVNNAGIVIYKEAKDYTV  107 (259)
T ss_dssp             TTCCCEEEECCCCCCCCCGGGCCH
T ss_pred             CCCceEEEECCceeccCccccCCH
Confidence            347999999977665555444443

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.01  E-value=0.18  Score=43.68  Aligned_cols=89  Identities=15%  Similarity=0.144  Sum_probs=63.7

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE  264 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~  264 (371)
                      +++.+|=-|.++ .++.++|+.+. .+++|+.+|.+++.++.+.+.++..+.  ++.+++.|+.+.-.         ...
T Consensus         9 enKvalITGas~-GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~~~   85 (251)
T d2c07a1           9 ENKVALVTGAGR-GIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGY--ESSGYAGDVSKKEEISEVINKILTEH   85 (251)
T ss_dssp             SSCEEEEESTTS-HHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTC--CEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCC-HHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            456677777554 57777777653 467999999999999988888876653  48999999875311         114


Q ss_pred             CceeEEEEcCCCCCCCCcccch
Q 017476          265 GKLSGVVSNPPYIPSDDISGLQ  286 (371)
Q Consensus       265 ~~fDlIvsNPPYi~~~~~~~l~  286 (371)
                      +++|++|.|........+..++
T Consensus        86 g~iDilvnnag~~~~~~~~~~~  107 (251)
T d2c07a1          86 KNVDILVNNAGITRDNLFLRMK  107 (251)
T ss_dssp             SCCCEEEECCCCCCCCCTTTCC
T ss_pred             CCceeeeecccccccccccccc
Confidence            7899999998776655544443

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=93.92  E-value=0.056  Score=44.11  Aligned_cols=96  Identities=14%  Similarity=0.141  Sum_probs=61.3

Q ss_pred             CCCCeEEEECCccc-HHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc--Ccccc-ccc-CCCcee
Q 017476          194 LRDGFWVDLGTGSG-AIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG--SWFGK-LKD-VEGKLS  268 (371)
Q Consensus       194 ~~~~~VLDlG~GsG-~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~g--D~~~~-l~~-~~~~fD  268 (371)
                      .++.+||=.|+|.. .+++.+++.+ ....|+++|.+++-++.+++    .|..   .++..  |..+. ... ....+|
T Consensus        31 ~~g~~vli~GaG~vG~~~~~~a~~~-g~~~vv~~~~~~~k~~~~~~----~ga~---~~i~~~~~~~~~~~~~~~~~g~d  102 (172)
T d1h2ba2          31 YPGAYVAIVGVGGLGHIAVQLLKVM-TPATVIALDVKEEKLKLAER----LGAD---HVVDARRDPVKQVMELTRGRGVN  102 (172)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHH-CCCEEEEEESSHHHHHHHHH----TTCS---EEEETTSCHHHHHHHHTTTCCEE
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHhh-cCcccccccchhHHHHHHhh----cccc---eeecCcccHHHHHHHhhCCCCce
Confidence            35678999999854 4557777776 45689999999998888775    3432   23322  21111 111 124589


Q ss_pred             EEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          269 GVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       269 lIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      +|+-+-.                         +       ...++.+.+.|++||++++.-
T Consensus       103 ~vid~~g-------------------------~-------~~~~~~a~~~l~~~G~iv~~G  131 (172)
T d1h2ba2         103 VAMDFVG-------------------------S-------QATVDYTPYLLGRMGRLIIVG  131 (172)
T ss_dssp             EEEESSC-------------------------C-------HHHHHHGGGGEEEEEEEEECC
T ss_pred             EEEEecC-------------------------c-------chHHHHHHHHHhCCCEEEEEe
Confidence            8886211                         0       145678889999999999753

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.79  E-value=0.15  Score=44.45  Aligned_cols=89  Identities=17%  Similarity=0.060  Sum_probs=57.8

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc----------ccC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL----------KDV  263 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l----------~~~  263 (371)
                      +++++|=-|+++| ++.++|+.+ ..+++|+.+|.+++.++.+.+.+...+.  ++..+..|..+.-          ...
T Consensus         7 kgK~alVTGas~G-IG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (259)
T d1xq1a_           7 KAKTVLVTGGTKG-IGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGF--QVTGSVCDASLRPEREKLMQTVSSMF   83 (259)
T ss_dssp             TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEeccCCCHHHHHHHHHHHHHHh
Confidence            5677887776655 444444432 1468999999999999888888776653  4899999986531          111


Q ss_pred             CCceeEEEEcCCCCCCCCcccch
Q 017476          264 EGKLSGVVSNPPYIPSDDISGLQ  286 (371)
Q Consensus       264 ~~~fDlIvsNPPYi~~~~~~~l~  286 (371)
                      .++.|++|.|.-+.....+..++
T Consensus        84 ~g~idilvnnAG~~~~~~~~~~~  106 (259)
T d1xq1a_          84 GGKLDILINNLGAIRSKPTLDYT  106 (259)
T ss_dssp             TTCCSEEEEECCC------CCCC
T ss_pred             CCCcccccccccccCCCchhhCC
Confidence            36899999998766544444333

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=93.75  E-value=0.16  Score=44.33  Aligned_cols=80  Identities=19%  Similarity=0.145  Sum_probs=56.3

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE  264 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~  264 (371)
                      +++++|=-|.++| ++.++++.+ ..+++|+.+|.+++.++.+.+.+...+.  ++..+..|+.+.-.         ...
T Consensus         4 ~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (260)
T d1zema1           4 NGKVCLVTGAGGN-IGLATALRLAEEGTAIALLDMNREALEKAEASVREKGV--EARSYVCDVTSEEAVIGTVDSVVRDF   80 (260)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTS--CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            5678887776655 444444432 1468999999999999988888776653  48899999865311         113


Q ss_pred             CceeEEEEcCCCC
Q 017476          265 GKLSGVVSNPPYI  277 (371)
Q Consensus       265 ~~fDlIvsNPPYi  277 (371)
                      ++.|++|.|--+.
T Consensus        81 g~iDilVnnaG~~   93 (260)
T d1zema1          81 GKIDFLFNNAGYQ   93 (260)
T ss_dssp             SCCCEEEECCCCC
T ss_pred             CCCCeehhhhccc
Confidence            6899999996654

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.68  E-value=0.16  Score=44.54  Aligned_cols=125  Identities=16%  Similarity=0.066  Sum_probs=77.3

Q ss_pred             CCeEEEECCcccHHHHHHHHHhC--CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc---------ccCC
Q 017476          196 DGFWVDLGTGSGAIAIGIARVLG--SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL---------KDVE  264 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~~--~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l---------~~~~  264 (371)
                      +++|.=+--|++.++.++|+.+.  .+.+|+.++.+++.++.+.+.++..+.  ++.+++.|+.+.-         ....
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dvs~~~sv~~~~~~~~~~~   79 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL--SPRFHQLDIDDLQSIRALRDFLRKEY   79 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEEecCCHHHHHHHHHHHHHhc
Confidence            45776665566667766666542  367999999999999999888887764  4889999986531         1113


Q ss_pred             CceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          265 GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       265 ~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      +++|++|.|-=+...........+.  ++..+..-     +--...+++.+..+|+++|.++...
T Consensus        80 g~iDiLVnNAGi~~~~~~~~~~~~~--~~~~~~vN-----~~g~~~l~~~~lp~m~~~g~ivnis  137 (275)
T d1wmaa1          80 GGLDVLVNNAGIAFKVADPTPFHIQ--AEVTMKTN-----FFGTRDVCTELLPLIKPQGRVVNVS  137 (275)
T ss_dssp             SSEEEEEECCCCCCCTTCCSCHHHH--HHHHHHHH-----THHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             CCcEEEEEcCCcCCCCCcccCCHHH--HHHHHHHH-----HHHHHHHHHHHHHHHHhcCCccccc
Confidence            6899999996443222221111111  11000000     1112256677788999999987764

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.68  E-value=0.14  Score=44.97  Aligned_cols=80  Identities=14%  Similarity=0.075  Sum_probs=57.5

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEcCcccccc---------cC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQ-DIIEIRQGSWFGKLK---------DV  263 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~-~~v~~~~gD~~~~l~---------~~  263 (371)
                      +++++|=-|+++| ++.++|+.+ ..+++|+.+|.+++.++.+.+.+...+.. .++..+.+|+.+.-.         ..
T Consensus         3 ~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (274)
T d1xhla_           3 SGKSVIITGSSNG-IGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK   81 (274)
T ss_dssp             TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence            4667777776665 455554443 14679999999999999998888887654 468999999866311         11


Q ss_pred             CCceeEEEEcCC
Q 017476          264 EGKLSGVVSNPP  275 (371)
Q Consensus       264 ~~~fDlIvsNPP  275 (371)
                      .++.|++|.|.=
T Consensus        82 ~G~iDilVnnAG   93 (274)
T d1xhla_          82 FGKIDILVNNAG   93 (274)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCceEEEeecc
Confidence            368999999953

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=93.56  E-value=0.059  Score=44.41  Aligned_cols=101  Identities=18%  Similarity=0.129  Sum_probs=64.4

Q ss_pred             CCCCCCeEEEECCcc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcC-cccccc--cCCCce
Q 017476          192 DGLRDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGS-WFGKLK--DVEGKL  267 (371)
Q Consensus       192 ~~~~~~~VLDlG~Gs-G~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD-~~~~l~--~~~~~f  267 (371)
                      ...++.+|+=+|||. |.+++.+++.+ ...+|+++|.+++-++.|++    .|...-+.....| ......  ...+.+
T Consensus        25 ~v~~G~~VlV~G~G~iGl~a~~~ak~~-Ga~~Vi~~d~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~~~~~~~~G~   99 (174)
T d1e3ia2          25 KVTPGSTCAVFGLGCVGLSAIIGCKIA-GASRIIAIDINGEKFPKAKA----LGATDCLNPRELDKPVQDVITELTAGGV   99 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHH----TTCSEEECGGGCSSCHHHHHHHHHTSCB
T ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHh-CCceeeeeccchHHHHHHHH----hCCCcccCCccchhhhhhhHhhhhcCCC
Confidence            345678999999997 88899999986 44589999999998877765    4543211111112 111000  013568


Q ss_pred             eEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccC-cEEEEEE
Q 017476          268 SGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPG-GFFAFET  329 (371)
Q Consensus       268 DlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~Lkpg-G~lvle~  329 (371)
                      |+++-.=                         |       ....++.+.+.+++| |.+++.-
T Consensus       100 d~vie~~-------------------------G-------~~~~~~~a~~~~~~g~G~~v~vG  130 (174)
T d1e3ia2         100 DYSLDCA-------------------------G-------TAQTLKAAVDCTVLGWGSCTVVG  130 (174)
T ss_dssp             SEEEESS-------------------------C-------CHHHHHHHHHTBCTTTCEEEECC
T ss_pred             cEEEEec-------------------------c-------cchHHHHHHHHhhcCCeEEEecC
Confidence            8887510                         0       014677888999996 8988753

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=93.50  E-value=0.28  Score=42.61  Aligned_cols=91  Identities=16%  Similarity=0.152  Sum_probs=63.3

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc----------ccC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL----------KDV  263 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l----------~~~  263 (371)
                      +++++|=.|+..| ++.++++.+ ..+++|+.++.+++.++.+.+.+...+.  .+.++..|+.+.-          ...
T Consensus         5 ~gK~alITGas~G-IG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~--~~~~~~~D~s~~~~~~~~~~~~~~~~   81 (258)
T d1ae1a_           5 KGTTALVTGGSKG-IGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGL--NVEGSVCDLLSRTERDKLMQTVAHVF   81 (258)
T ss_dssp             TTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--CceEEEeecCCHHHHHHHHHHHHHHh
Confidence            5778888887655 444444332 1468999999999999988888877764  3888899986531          112


Q ss_pred             CCceeEEEEcCCCCCCCCcccchhh
Q 017476          264 EGKLSGVVSNPPYIPSDDISGLQVE  288 (371)
Q Consensus       264 ~~~fDlIvsNPPYi~~~~~~~l~~e  288 (371)
                      .+..|+++.|........+..++.+
T Consensus        82 ~g~idilinnag~~~~~~~~~~~~~  106 (258)
T d1ae1a_          82 DGKLNILVNNAGVVIHKEAKDFTEK  106 (258)
T ss_dssp             TSCCCEEEECCCCCCCCCTTTCCHH
T ss_pred             CCCcEEEeccccccccCccccCCHH
Confidence            3679999999877666555555443

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=93.49  E-value=0.2  Score=43.69  Aligned_cols=126  Identities=17%  Similarity=0.081  Sum_probs=76.1

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCC-HHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------c
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLN-PLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------D  262 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis-~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~  262 (371)
                      .+++++|=.|+++| ++.++++.+ ..+++|+..|.+ ++.++.+.+.++..+.  ++.+++.|..+.-.         .
T Consensus        16 L~gK~~lITGas~G-IG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~~   92 (272)
T d1g0oa_          16 LEGKVALVTGAGRG-IGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGS--DAACVKANVGVVEDIVRMFEEAVK   92 (272)
T ss_dssp             CTTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCC--ceeeEeCCCCCHHHHHHHHHHHHH
Confidence            45677887777655 444444433 146799999987 5666766666766664  48999999865311         1


Q ss_pred             CCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          263 VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       263 ~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      ..++.|++|.|..+.....+.....+.....-...       +...-.+.+.+..+|+.+|..++..
T Consensus        93 ~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~n-------l~~~~~~~~~~~~~m~~~g~~i~i~  152 (272)
T d1g0oa_          93 IFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTIN-------TRGQFFVAREAYKHLEIGGRLILMG  152 (272)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHH-------THHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred             HhCCCCccccccccchhhhhhhhhhhHHHHHhhhc-------cceeeeecccccccccccccccccc
Confidence            13689999999877665554444332211100000       1123355667777888888777754

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.45  E-value=0.045  Score=44.12  Aligned_cols=44  Identities=20%  Similarity=0.257  Sum_probs=33.7

Q ss_pred             CCCCCeEEEECCcc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476          193 GLRDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       193 ~~~~~~VLDlG~Gs-G~~al~la~~~~~~~~V~gvDis~~al~~A~~  238 (371)
                      ..++.+||=.|+|+ |.+++.+++.  .+.+|+++|.+++-++.+++
T Consensus        25 ~~~g~~vlv~G~G~iG~~a~~~a~~--~g~~v~~~~~~~~r~~~~k~   69 (168)
T d1rjwa2          25 AKPGEWVAIYGIGGLGHVAVQYAKA--MGLNVVAVDIGDEKLELAKE   69 (168)
T ss_dssp             CCTTCEEEEECCSTTHHHHHHHHHH--TTCEEEEECSCHHHHHHHHH
T ss_pred             CCCCCEEEEeecccchhhhhHHHhc--CCCeEeccCCCHHHhhhhhh
Confidence            44677888899885 4556666776  45799999999999887765

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=93.40  E-value=0.22  Score=43.18  Aligned_cols=91  Identities=15%  Similarity=0.092  Sum_probs=60.4

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cC
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DV  263 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~  263 (371)
                      ++++++|=-|.++ .++.++++.+ ..+++|+.+|.+++.++.+.+.+.   ..+++.++++|+.+.-.         ..
T Consensus         4 L~gK~alVTGas~-GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (251)
T d1zk4a1           4 LDGKVAIITGGTL-GIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVG---TPDQIQFFQHDSSDEDGWTKLFDATEKA   79 (251)
T ss_dssp             TTTCEEEETTTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC---CTTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC---CCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            3566777777554 4555555443 146899999999998887776653   34569999999875311         11


Q ss_pred             CCceeEEEEcCCCCCCCCcccchhh
Q 017476          264 EGKLSGVVSNPPYIPSDDISGLQVE  288 (371)
Q Consensus       264 ~~~fDlIvsNPPYi~~~~~~~l~~e  288 (371)
                      .++.|++|.|.-+.....+..++.+
T Consensus        80 ~G~iDiLVnnAg~~~~~~~~~~~~~  104 (251)
T d1zk4a1          80 FGPVSTLVNNAGIAVNKSVEETTTA  104 (251)
T ss_dssp             HSSCCEEEECCCCCCCCCTTTCCHH
T ss_pred             hCCceEEEeccccccccchhccccc
Confidence            3689999999877655555544443

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=93.17  E-value=0.057  Score=44.08  Aligned_cols=74  Identities=22%  Similarity=0.179  Sum_probs=48.6

Q ss_pred             CCCCCeEEEECCc--ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccC--CCcee
Q 017476          193 GLRDGFWVDLGTG--SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV--EGKLS  268 (371)
Q Consensus       193 ~~~~~~VLDlG~G--sG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~--~~~fD  268 (371)
                      ..++.+||=.|+|  .|.+++.+|+..  +++|++++.|++-++.+++    .|...-+.....|+.+.+...  .+.+|
T Consensus        26 l~~g~~Vlv~ga~g~vG~~~iqlak~~--Ga~Vi~~~~s~~k~~~~~~----lGa~~vi~~~~~d~~~~v~~~t~g~g~d   99 (179)
T d1qora2          26 IKPDEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGTAQKAQSALK----AGAWQVINYREEDLVERLKEITGGKKVR   99 (179)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHTTTCCEE
T ss_pred             CCCCCEEEEEccccccchHHHHHHHHh--CCeEeecccchHHHHHHHh----cCCeEEEECCCCCHHHHHHHHhCCCCeE
Confidence            3456788888555  577899999985  6899999999999888764    454321222233443333221  35689


Q ss_pred             EEEE
Q 017476          269 GVVS  272 (371)
Q Consensus       269 lIvs  272 (371)
                      +|+-
T Consensus       100 ~v~d  103 (179)
T d1qora2         100 VVYD  103 (179)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8876

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.11  E-value=0.41  Score=41.21  Aligned_cols=87  Identities=17%  Similarity=0.178  Sum_probs=61.8

Q ss_pred             CCCCeEEEECCcccH---HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------
Q 017476          194 LRDGFWVDLGTGSGA---IAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------  261 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~---~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------  261 (371)
                      ..++.+|=-|+++|.   ++..+++   .+++|+.+|.+++.++...+++...+  .++..+..|..+.-.         
T Consensus         5 l~Gkv~lITGas~GIG~~ia~~la~---~G~~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~   79 (244)
T d1yb1a_           5 VTGEIVLITGAGHGIGRLTAYEFAK---LKSKLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVK   79 (244)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHH
Confidence            456677777777763   4444444   47899999999999999888888766  358999999876411         


Q ss_pred             cCCCceeEEEEcCCCCCCCCcccc
Q 017476          262 DVEGKLSGVVSNPPYIPSDDISGL  285 (371)
Q Consensus       262 ~~~~~fDlIvsNPPYi~~~~~~~l  285 (371)
                      ...+..|++|.|--..........
T Consensus        80 ~~~g~idilinnag~~~~~~~~~~  103 (244)
T d1yb1a_          80 AEIGDVSILVNNAGVVYTSDLFAT  103 (244)
T ss_dssp             HHTCCCSEEEECCCCCCCCCCGGG
T ss_pred             HHcCCCceeEeecccccccccccc
Confidence            124789999999776655444433

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.09  E-value=0.23  Score=42.99  Aligned_cols=90  Identities=21%  Similarity=0.172  Sum_probs=58.7

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHH-HcCCCCcEEEEEcCcccccc---------cC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQ-RYGLQDIIEIRQGSWFGKLK---------DV  263 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~-~~gl~~~v~~~~gD~~~~l~---------~~  263 (371)
                      +++++|=-|.++| ++.++|+.+ ..+++|+.+|.+.+.++.+.+.+. ..+  .++.+++.|+.+.-.         ..
T Consensus         4 ~gK~~lITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~   80 (251)
T d1vl8a_           4 RGRVALVTGGSRG-LGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYG--VETMAFRCDVSNYEEVKKLLEAVKEK   80 (251)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            4678888887665 444444432 146899999999998877666553 444  348889999865311         11


Q ss_pred             CCceeEEEEcCCCCCCCCcccchh
Q 017476          264 EGKLSGVVSNPPYIPSDDISGLQV  287 (371)
Q Consensus       264 ~~~fDlIvsNPPYi~~~~~~~l~~  287 (371)
                      .++.|++|.|-=+.....+..++.
T Consensus        81 ~g~iDiLVnnAG~~~~~~~~~~~~  104 (251)
T d1vl8a_          81 FGKLDTVVNAAGINRRHPAEEFPL  104 (251)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCH
T ss_pred             cCCCCEEEECCCCCCCCChhhCCH
Confidence            368999999976554444444443

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=92.68  E-value=0.22  Score=43.16  Aligned_cols=126  Identities=18%  Similarity=0.104  Sum_probs=75.8

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhC-CCcEEEE-EeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------c
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLG-SKGSIIA-VDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------D  262 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~-~~~~V~g-vDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~  262 (371)
                      ..++++|=.| |++.++.++|+.+. .+++|+. .+.+.+.++.+.+.+..+|.  ++.++..|+.+.-.         .
T Consensus         4 L~GK~alITG-as~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~~   80 (259)
T d1ja9a_           4 LAGKVALTTG-AGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGA--QGVAIQADISKPSEVVALFDKAVS   80 (259)
T ss_dssp             TTTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeC-CCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCC--CceEecCCCCCHHHHHHHHHHHHH
Confidence            4577888666 55666666665542 3567776 46777888888888888774  48899999865311         1


Q ss_pred             CCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          263 VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       263 ~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      ..+..|++|.|.-......+...+.+..+.  .....     +...-.+++.+..+++.+|.+++..
T Consensus        81 ~~g~idilinnag~~~~~~~~~~~~~~~~~--~~~~n-----~~~~~~~~~~~~~~m~~~g~~iii~  140 (259)
T d1ja9a_          81 HFGGLDFVMSNSGMEVWCDELEVTQELFDK--VFNLN-----TRGQFFVAQQGLKHCRRGGRIILTS  140 (259)
T ss_dssp             HHSCEEEEECCCCCCCCCCGGGCCHHHHHH--HHHHH-----THHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             HcCCCcEEEeccccccccccccchHHHHHH--HHhhc-----cceeeeehhhhhhhhhcCCcccccc
Confidence            136899999998765544443333222110  00000     1112245566667778777776653

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=92.68  E-value=0.095  Score=48.34  Aligned_cols=46  Identities=20%  Similarity=0.280  Sum_probs=34.6

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhC------CCcEEEEEeCCHHHHHHHHHHH
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLG------SKGSIIAVDLNPLAAAVAAFNA  240 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~------~~~~V~gvDis~~al~~A~~n~  240 (371)
                      ...+|+|+|+|+|.++..+.+.+.      ...+++-+|.|+...+.-++++
T Consensus        79 ~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l  130 (365)
T d1zkda1          79 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLL  130 (365)
T ss_dssp             SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHS
T ss_pred             ccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHh
Confidence            445899999999999988877542      2457999999997655555443

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.57  E-value=0.089  Score=42.96  Aligned_cols=97  Identities=15%  Similarity=0.167  Sum_probs=61.4

Q ss_pred             CCCCCeEEEEC--CcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccC--CCcee
Q 017476          193 GLRDGFWVDLG--TGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV--EGKLS  268 (371)
Q Consensus       193 ~~~~~~VLDlG--~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~--~~~fD  268 (371)
                      ..++.+||=.|  .|.|.+++.+|+.+  +.++++++-+++-.+.+++    .|...-+.....|+.+.+...  ...+|
T Consensus        23 ~~~g~~VlI~ga~g~vG~~~iqla~~~--g~~vi~~~~~~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~t~~~g~d   96 (183)
T d1pqwa_          23 LSPGERVLIHSATGGVGMAAVSIAKMI--GARIYTTAGSDAKREMLSR----LGVEYVGDSRSVDFADEILELTDGYGVD   96 (183)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHT----TCCSEEEETTCSTHHHHHHHHTTTCCEE
T ss_pred             CCCCCEEEEECCCCCcccccchhhccc--cccceeeeccccccccccc----ccccccccCCccCHHHHHHHHhCCCCEE
Confidence            34567888876  45778889999886  6799999988887777664    454321111222333322211  24699


Q ss_pred             EEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476          269 GVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE  328 (371)
Q Consensus       269 lIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle  328 (371)
                      +|+..-                         |+        ..++.+.+.|+++|+++..
T Consensus        97 ~v~d~~-------------------------g~--------~~~~~~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          97 VVLNSL-------------------------AG--------EAIQRGVQILAPGGRFIEL  123 (183)
T ss_dssp             EEEECC-------------------------CT--------HHHHHHHHTEEEEEEEEEC
T ss_pred             EEEecc-------------------------cc--------hHHHHHHHHhcCCCEEEEE
Confidence            999721                         00        3455667899999998874

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=92.40  E-value=0.26  Score=42.69  Aligned_cols=123  Identities=18%  Similarity=0.224  Sum_probs=70.3

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cC
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DV  263 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~  263 (371)
                      .+++++|=-|.++| ++.++|+.+ ..+++|+.+|.+++.++.+.+.+   +  .+..+++.|..+.-.         ..
T Consensus         4 L~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~~~~~~~~~~~~   77 (253)
T d1hxha_           4 LQGKVALVTGGASG-VGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL---G--ERSMFVRHDVSSEADWTLVMAAVQRR   77 (253)
T ss_dssp             TTTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH---C--TTEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---C--CCeEEEEeecCCHHHHHHHHHHHHHH
Confidence            35667777775554 555555543 14679999999998887665443   3  457888898865311         11


Q ss_pred             CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccc-cCcEEEEEE
Q 017476          264 EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLK-PGGFFAFET  329 (371)
Q Consensus       264 ~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~Lk-pgG~lvle~  329 (371)
                      .++.|++|.|.-......+..++.+....  .+..-     +...-.+.+.+..+|+ .+|.++...
T Consensus        78 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~--~~~vN-----l~~~~~~~~~~~~~m~~~~G~Iv~is  137 (253)
T d1hxha_          78 LGTLNVLVNNAGILLPGDMETGRLEDFSR--LLKIN-----TESVFIGCQQGIAAMKETGGSIINMA  137 (253)
T ss_dssp             HCSCCEEEECCCCCCCBCTTTCCHHHHHH--HHHHH-----THHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             hCCCCeEEecccccCCCCcccCCHHHHHH--HHHHh-----hhHHHHHHHHHHHHHHhcCCceeccc
Confidence            36899999998665444444433332111  11000     1111234445555554 578877654

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=92.25  E-value=0.24  Score=39.85  Aligned_cols=97  Identities=13%  Similarity=0.151  Sum_probs=61.2

Q ss_pred             CCCCCCeEEEECCc-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEE
Q 017476          192 DGLRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGV  270 (371)
Q Consensus       192 ~~~~~~~VLDlG~G-sG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlI  270 (371)
                      +..++.+|+=+|+| .|.+++.+|+.+  +.+++++|.+++-++.+++    .|..   .++..+-.+......+.+|.+
T Consensus        27 ~~~~G~~VlI~GaG~vG~~a~qlak~~--Ga~~i~~~~~~~~~~~a~~----lGad---~~i~~~~~~~~~~~~~~~D~v   97 (168)
T d1uufa2          27 QAGPGKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKA----LGAD---EVVNSRNADEMAAHLKSFDFI   97 (168)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHH----HTCS---EEEETTCHHHHHTTTTCEEEE
T ss_pred             CCCCCCEEEEeccchHHHHHHHHhhcc--cccchhhccchhHHHHHhc----cCCc---EEEECchhhHHHHhcCCCcee
Confidence            44567889989987 477888888875  6788899999988877764    4543   222221111111223579988


Q ss_pred             EEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       271 vsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      +-.=                         |+.       ..++.+.+.|+++|.+++.-
T Consensus        98 id~~-------------------------g~~-------~~~~~~~~~l~~~G~iv~~G  124 (168)
T d1uufa2          98 LNTV-------------------------AAP-------HNLDDFTTLLKRDGTMTLVG  124 (168)
T ss_dssp             EECC-------------------------SSC-------CCHHHHHTTEEEEEEEEECC
T ss_pred             eeee-------------------------ecc-------hhHHHHHHHHhcCCEEEEec
Confidence            8520                         111       12345568999999998863

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=91.88  E-value=0.28  Score=42.77  Aligned_cols=80  Identities=18%  Similarity=0.179  Sum_probs=55.1

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cC
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DV  263 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~  263 (371)
                      .+++++|=.|+++| ++.++|+.+ ..+++|+.+|.+++.++.+.+.+..   .+++.+++.|+.+.-.         ..
T Consensus         4 L~gKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (268)
T d2bgka1           4 LQDKVAIITGGAGG-IGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS---PDVISFVHCDVTKDEDVRNLVDTTIAK   79 (268)
T ss_dssp             TTTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC---CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            35778888887666 555555543 2468999999999988777665532   3458889999865311         11


Q ss_pred             CCceeEEEEcCCCC
Q 017476          264 EGKLSGVVSNPPYI  277 (371)
Q Consensus       264 ~~~fDlIvsNPPYi  277 (371)
                      .++.|++|.|--..
T Consensus        80 ~g~iD~lVnnAG~~   93 (268)
T d2bgka1          80 HGKLDIMFGNVGVL   93 (268)
T ss_dssp             HSCCCEEEECCCCC
T ss_pred             cCCcceeccccccc
Confidence            36899999987543

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.34  E-value=0.46  Score=40.98  Aligned_cols=85  Identities=18%  Similarity=0.067  Sum_probs=57.3

Q ss_pred             CCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCCC
Q 017476          196 DGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG  265 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~~  265 (371)
                      ++.+|=-|+++| ++.++|+.+ ..+++|+.+|.+.+.++.+...+....-..++.+++.|+.+.-.         ...+
T Consensus         3 GKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   81 (254)
T d2gdza1           3 GKVALVTGAAQG-IGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   81 (254)
T ss_dssp             TCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            567777776655 555555543 24789999999999988777666543333468999999865311         1136


Q ss_pred             ceeEEEEcCCCCCCCC
Q 017476          266 KLSGVVSNPPYIPSDD  281 (371)
Q Consensus       266 ~fDlIvsNPPYi~~~~  281 (371)
                      ++|++|.|--.....+
T Consensus        82 ~iDilVnnAg~~~~~~   97 (254)
T d2gdza1          82 RLDILVNNAGVNNEKN   97 (254)
T ss_dssp             CCCEEEECCCCCCSSS
T ss_pred             CcCeeccccccccccc
Confidence            8999999976554433

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=91.31  E-value=0.3  Score=42.48  Aligned_cols=78  Identities=15%  Similarity=0.170  Sum_probs=56.0

Q ss_pred             CCCeEEEECCcccH---HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------c
Q 017476          195 RDGFWVDLGTGSGA---IAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------D  262 (371)
Q Consensus       195 ~~~~VLDlG~GsG~---~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~  262 (371)
                      +++++|=-|+++|.   ++..+++   .+++|+.+|.+++.++.+.+.+...+...++..++.|+.+.-.         .
T Consensus         3 ~gK~alITGas~GIG~aia~~la~---~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~   79 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAA---EGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTE   79 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHH
Confidence            46678888876663   3444444   4689999999999998887777666555568999999865311         1


Q ss_pred             CCCceeEEEEcCC
Q 017476          263 VEGKLSGVVSNPP  275 (371)
Q Consensus       263 ~~~~fDlIvsNPP  275 (371)
                      ..++.|++|.|-=
T Consensus        80 ~~G~iDiLVnnAG   92 (258)
T d1iy8a_          80 RFGRIDGFFNNAG   92 (258)
T ss_dssp             HHSCCSEEEECCC
T ss_pred             HhCCCCEEEECCc
Confidence            1368999999854

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.07  E-value=0.46  Score=41.38  Aligned_cols=81  Identities=11%  Similarity=0.042  Sum_probs=56.8

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEcCcccccc---------cC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQ-DIIEIRQGSWFGKLK---------DV  263 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~-~~v~~~~gD~~~~l~---------~~  263 (371)
                      +++++|=.|+++| ++.++|+.+ ..+++|+.+|.+++.++.+.+.+...+.. .++..+++|+.+.-.         ..
T Consensus         4 ~gK~alVTGas~G-IG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~   82 (272)
T d1xkqa_           4 SNKTVIITGSSNG-IGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   82 (272)
T ss_dssp             TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            4667777776554 444444433 14679999999999999988888777643 468999999865311         11


Q ss_pred             CCceeEEEEcCCC
Q 017476          264 EGKLSGVVSNPPY  276 (371)
Q Consensus       264 ~~~fDlIvsNPPY  276 (371)
                      .++.|++|.|-=.
T Consensus        83 ~g~iDilvnnAG~   95 (272)
T d1xkqa_          83 FGKIDVLVNNAGA   95 (272)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             hCCceEEEeCCcc
Confidence            3689999999543

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=90.82  E-value=0.19  Score=40.82  Aligned_cols=94  Identities=17%  Similarity=0.184  Sum_probs=59.6

Q ss_pred             CCCCCCeEEEECC--cccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeE
Q 017476          192 DGLRDGFWVDLGT--GSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSG  269 (371)
Q Consensus       192 ~~~~~~~VLDlG~--GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDl  269 (371)
                      ...++.+||=.|.  |.|.+++.+|+..  +++|++++.+++.++.+++    .|.+.  -+-..+..+.... .+.+|+
T Consensus        24 ~~~~g~~VlI~ga~G~vG~~aiqlak~~--G~~vi~~~~~~~~~~~~~~----lGa~~--~i~~~~~~~~~~~-~~g~D~   94 (171)
T d1iz0a2          24 QARPGEKVLVQAAAGALGTAAVQVARAM--GLRVLAAASRPEKLALPLA----LGAEE--AATYAEVPERAKA-WGGLDL   94 (171)
T ss_dssp             TCCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSGGGSHHHHH----TTCSE--EEEGGGHHHHHHH-TTSEEE
T ss_pred             CCCCCCEEEEEeccccchhhhhhhhccc--ccccccccccccccccccc----cccce--eeehhhhhhhhhc-cccccc
Confidence            3446778888884  3467888899975  6799999999987777664    46432  2222222222222 346998


Q ss_pred             EEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476          270 VVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE  328 (371)
Q Consensus       270 IvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle  328 (371)
                      |+- .                         .|        ..++.+.+.|+++|.+++.
T Consensus        95 v~d-~-------------------------~G--------~~~~~~~~~l~~~G~~v~~  119 (171)
T d1iz0a2          95 VLE-V-------------------------RG--------KEVEESLGLLAHGGRLVYI  119 (171)
T ss_dssp             EEE-C-------------------------SC--------TTHHHHHTTEEEEEEEEEC
T ss_pred             ccc-c-------------------------cc--------hhHHHHHHHHhcCCcEEEE
Confidence            874 0                         11        1134566899999998864

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=90.60  E-value=0.63  Score=39.84  Aligned_cols=122  Identities=13%  Similarity=0.029  Sum_probs=70.2

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE  264 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~  264 (371)
                      +++++|=-|.++| ++.++|+.+ ..+++|+.+|.+++.++...+.+   +  .+...++.|..+.-.         ...
T Consensus         3 ~gK~alITGas~G-IG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~---~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   76 (243)
T d1q7ba_           3 EGKIALVTGASRG-IGRAIAETLAARGAKVIGTATSENGAQAISDYL---G--ANGKGLMLNVTDPASIESVLEKIRAEF   76 (243)
T ss_dssp             TTCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH---G--GGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHh---C--CCCcEEEEEecCHHHhhhhhhhhhccc
Confidence            4566777676555 455555443 14679999999998887665543   2  347888999865311         114


Q ss_pred             CceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccc--cCcEEEEEE
Q 017476          265 GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLK--PGGFFAFET  329 (371)
Q Consensus       265 ~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~Lk--pgG~lvle~  329 (371)
                      ++.|++|.|.-+.....+..++.+..+..-..-       +...-.+.+.+.++|+  .+|.++...
T Consensus        77 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN-------l~~~~~~~~~~~~~m~~~~~G~II~is  136 (243)
T d1q7ba_          77 GEVDILVNNAGITRDNLLMRMKDEEWNDIIETN-------LSSVFRLSKAVMRAMMKKRHGRIITIG  136 (243)
T ss_dssp             CSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHH-------THHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred             CCcceehhhhhhcccccccccccccccccccee-------echhhhhHHHHHHHHHHcCCCEeeeec
Confidence            789999999766555544444333211100000       1112244555555553  468877754

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=90.31  E-value=0.42  Score=41.43  Aligned_cols=87  Identities=16%  Similarity=0.097  Sum_probs=56.4

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cC
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DV  263 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~  263 (371)
                      .+++++|=-|.++| ++.++|+++. .+++|+.+|.+++.++.+.+.     +.+++.+++.|+.+.-.         ..
T Consensus         3 L~gK~alVTGas~G-IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~-----~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   76 (254)
T d1hdca_           3 LSGKTVIITGGARG-LGAEAARQAVAAGARVVLADVLDEEGAATARE-----LGDAARYQHLDVTIEEDWQRVVAYAREE   76 (254)
T ss_dssp             CCCSEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT-----TGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-----hCCceEEEEcccCCHHHHHHHHHHHHHH
Confidence            45778888887776 4444444331 468999999999877654433     23568999999865311         11


Q ss_pred             CCceeEEEEcCCCCCCCCcccch
Q 017476          264 EGKLSGVVSNPPYIPSDDISGLQ  286 (371)
Q Consensus       264 ~~~fDlIvsNPPYi~~~~~~~l~  286 (371)
                      .++.|++|.|.-+.....+..++
T Consensus        77 ~g~iDilVnnAg~~~~~~~~~~~   99 (254)
T d1hdca_          77 FGSVDGLVNNAGISTGMFLETES   99 (254)
T ss_dssp             HSCCCEEEECCCCCCCSCGGGSC
T ss_pred             cCCccEEEecCcccccccccccc
Confidence            36899999997665444444333

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.86  E-value=1.1  Score=35.55  Aligned_cols=41  Identities=32%  Similarity=0.383  Sum_probs=28.0

Q ss_pred             eEEEECCcc-c-HHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 017476          198 FWVDLGTGS-G-AIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN  239 (371)
Q Consensus       198 ~VLDlG~Gs-G-~~al~la~~~~~~~~V~gvDis~~al~~A~~n  239 (371)
                      +|+=+|||. | .++..+.+. +...+|+|+|.+++.++.|+++
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~-g~~~~I~~~D~~~~~~~~a~~~   45 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRS-GFKGKIYGYDINPESISKAVDL   45 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHT-TCCSEEEEECSCHHHHHHHHHT
T ss_pred             EEEEEccCHHHHHHHHHHHhc-CCCeEEEEEECChHHHHHHHHh
Confidence            577788863 2 244444432 3456899999999999887764

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=89.72  E-value=0.24  Score=40.54  Aligned_cols=71  Identities=17%  Similarity=0.123  Sum_probs=49.9

Q ss_pred             CCCCeEEEECCc-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEE
Q 017476          194 LRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS  272 (371)
Q Consensus       194 ~~~~~VLDlG~G-sG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvs  272 (371)
                      .++.+|+=+|+| .|..++..|..+  +++|+++|.+.+.++..+.-..     .+++....+-.. +...-...|+||+
T Consensus        30 v~pa~V~ViGaGvaG~~A~~~A~~l--GA~V~~~D~~~~~l~~l~~~~~-----~~~~~~~~~~~~-l~~~~~~aDivI~  101 (168)
T d1pjca1          30 VKPGKVVILGGGVVGTEAAKMAVGL--GAQVQIFDINVERLSYLETLFG-----SRVELLYSNSAE-IETAVAEADLLIG  101 (168)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHG-----GGSEEEECCHHH-HHHHHHTCSEEEE
T ss_pred             CCCcEEEEECCChHHHHHHHHHhhC--CCEEEEEeCcHHHHHHHHHhhc-----ccceeehhhhhh-HHHhhccCcEEEE
Confidence            357899999999 567888888886  6899999999999887665432     235555554311 2221246899998

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=89.61  E-value=0.89  Score=39.02  Aligned_cols=87  Identities=14%  Similarity=0.055  Sum_probs=58.7

Q ss_pred             CeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCCCc
Q 017476          197 GFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEGK  266 (371)
Q Consensus       197 ~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~~~  266 (371)
                      +.+|=-|.+ +.++.++|+.+ ..+++|+.+|.+++.++.+.+.+...+.  ++.+++.|+.+.-.         ...++
T Consensus         3 KValITGas-~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvs~~~~v~~~~~~~~~~~g~   79 (257)
T d2rhca1           3 EVALVTGAT-SGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGV--EADGRTCDVRSVPEIEALVAAVVERYGP   79 (257)
T ss_dssp             CEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            344555654 44555555543 2468999999999999988888887764  48999999865311         11478


Q ss_pred             eeEEEEcCCCCCCCCcccch
Q 017476          267 LSGVVSNPPYIPSDDISGLQ  286 (371)
Q Consensus       267 fDlIvsNPPYi~~~~~~~l~  286 (371)
                      .|++|.|--......+..++
T Consensus        80 iDilVnnAG~~~~~~~~~~~   99 (257)
T d2rhca1          80 VDVLVNNAGRPGGGATAELA   99 (257)
T ss_dssp             CSEEEECCCCCCCSCGGGCC
T ss_pred             CCEEEecccccCCCChHHcC
Confidence            99999997654444444433

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=89.44  E-value=0.87  Score=39.10  Aligned_cols=86  Identities=20%  Similarity=0.136  Sum_probs=58.1

Q ss_pred             EEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCCCcee
Q 017476          199 WVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEGKLS  268 (371)
Q Consensus       199 VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~~~fD  268 (371)
                      +|=-|++ +.++.++|+.+ ..+++|+.+|.+++.++.+.+.+...+.  ++.++++|..+.-.         ...++.|
T Consensus         4 alITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   80 (255)
T d1gega_           4 ALVTGAG-QGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGG--HAVAVKVDVSDRDQVFAAVEQARKTLGGFD   80 (255)
T ss_dssp             EEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred             EEEcCCc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHHhCCcc
Confidence            3555655 44555555443 2468999999999999988888877763  58899999865311         1147899


Q ss_pred             EEEEcCCCCCCCCcccchh
Q 017476          269 GVVSNPPYIPSDDISGLQV  287 (371)
Q Consensus       269 lIvsNPPYi~~~~~~~l~~  287 (371)
                      ++|.|-=+.+...+..++.
T Consensus        81 ilVnnAG~~~~~~~~~~~~   99 (255)
T d1gega_          81 VIVNNAGVAPSTPIESITP   99 (255)
T ss_dssp             EEEECCCCCCCBCGGGCCH
T ss_pred             EEEecccccccCcHHHhhh
Confidence            9999976555444444443

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=89.17  E-value=0.33  Score=39.55  Aligned_cols=97  Identities=13%  Similarity=0.045  Sum_probs=61.5

Q ss_pred             CCCCCeEEEECCcc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc-c-CCCcee
Q 017476          193 GLRDGFWVDLGTGS--GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-D-VEGKLS  268 (371)
Q Consensus       193 ~~~~~~VLDlG~Gs--G~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~-~-~~~~fD  268 (371)
                      ..++.+||=.|+|+  |..++.+|+..  +++|++++-+++.++.+++    .|...-+.....++.+... . ..+.+|
T Consensus        27 v~~G~~VlV~ga~ggvG~~aiqlak~~--Ga~vi~~~~~~~~~~~~~~----~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd  100 (182)
T d1v3va2          27 VKGGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLKQ----IGFDAAFNYKTVNSLEEALKKASPDGYD  100 (182)
T ss_dssp             CCSSCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSEEEETTSCSCHHHHHHHHCTTCEE
T ss_pred             CCCCCEEEEEeCCCchhHHHHHHHHcc--CCEEEEeCCCHHHHHHHHh----hhhhhhcccccccHHHHHHHHhhcCCCc
Confidence            34677888877754  56888888874  6899999999988777665    3533211111222222111 1 134699


Q ss_pred             EEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476          269 GVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE  328 (371)
Q Consensus       269 lIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle  328 (371)
                      +|+-.               +              |    ...++.+.+.|++||.+++.
T Consensus       101 ~v~D~---------------v--------------G----~~~~~~~~~~l~~~G~~v~~  127 (182)
T d1v3va2         101 CYFDN---------------V--------------G----GEFLNTVLSQMKDFGKIAIC  127 (182)
T ss_dssp             EEEES---------------S--------------C----HHHHHHHGGGEEEEEEEEEC
T ss_pred             eeEEe---------------c--------------C----chhhhhhhhhccCCCeEEee
Confidence            98841               0              1    14556778999999998875

>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: LPG1296-like
domain: Uncharacterized protein LPG1296
species: Legionella pneumophila [TaxId: 446]

Probab=89.04  E-value=0.28  Score=43.29  Aligned_cols=75  Identities=17%  Similarity=0.198  Sum_probs=56.9

Q ss_pred             EEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc---CCCceeEEEEcCCC
Q 017476          200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD---VEGKLSGVVSNPPY  276 (371)
Q Consensus       200 LDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~---~~~~fDlIvsNPPY  276 (371)
                      +..-.||-.++..+.+   +.-+.+.+|+.++-.+..++|+.   -..++++.+.|.++.+..   +.++=-+|+.+|||
T Consensus        87 l~~YPGSP~ia~~llR---~~Drl~l~ELHp~e~~~L~~~~~---~~~~~~v~~~DG~~~l~allPP~~rRgLVLIDPpY  160 (271)
T d2oo3a1          87 LSYYPGSPYFAINQLR---SQDRLYLCELHPTEYNFLLKLPH---FNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSY  160 (271)
T ss_dssp             CCEEECHHHHHHHHSC---TTSEEEEECCSHHHHHHHTTSCC---TTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCC
T ss_pred             cCcCCCCHHHHHHhCC---CCCceEEeecCHHHHHHHHHHhc---cCCCceEEcCchHHHHHhhCCCCCCceEEEecCCc
Confidence            4578899999887766   56799999999999888887753   235799999998875421   23455699999999


Q ss_pred             CCCC
Q 017476          277 IPSD  280 (371)
Q Consensus       277 i~~~  280 (371)
                      -..+
T Consensus       161 E~k~  164 (271)
T d2oo3a1         161 ERKE  164 (271)
T ss_dssp             CSTT
T ss_pred             CCHH
Confidence            6543

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.86  E-value=0.47  Score=38.86  Aligned_cols=97  Identities=15%  Similarity=0.189  Sum_probs=60.1

Q ss_pred             CCCCCeEEEECC--cccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc-CCCceeE
Q 017476          193 GLRDGFWVDLGT--GSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VEGKLSG  269 (371)
Q Consensus       193 ~~~~~~VLDlG~--GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~-~~~~fDl  269 (371)
                      ..++.+||=-|.  |.|.+++.+|+.+  +++|+++--+++-.+.+++    .|... +--+..++.+.... ..+.+|+
T Consensus        29 ~~~g~~VLI~gaaGGVG~~aiQlak~~--Ga~Viat~~s~~k~~~~~~----lGa~~-vi~~~~~~~~~~~~~~~~gvD~  101 (176)
T d1xa0a2          29 TPERGPVLVTGATGGVGSLAVSMLAKR--GYTVEASTGKAAEHDYLRV----LGAKE-VLAREDVMAERIRPLDKQRWAA  101 (176)
T ss_dssp             CGGGCCEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCTTCHHHHHH----TTCSE-EEECC---------CCSCCEEE
T ss_pred             CCCCCEEEEEeccchHHHHHHHHHHHc--CCceEEecCchHHHHHHHh----cccce-eeecchhHHHHHHHhhccCcCE
Confidence            334678888885  4567899999985  7899999999888877764    45432 21122222222111 1357998


Q ss_pred             EEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          270 VVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       270 IvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      |+-+-                         ||        ..++.+.+.|++||+++..-
T Consensus       102 vid~v-------------------------gg--------~~~~~~l~~l~~~Griv~~G  128 (176)
T d1xa0a2         102 AVDPV-------------------------GG--------RTLATVLSRMRYGGAVAVSG  128 (176)
T ss_dssp             EEECS-------------------------TT--------TTHHHHHHTEEEEEEEEECS
T ss_pred             EEEcC-------------------------Cc--------hhHHHHHHHhCCCceEEEee
Confidence            88531                         11        23456668999999998854

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=88.84  E-value=1.1  Score=38.47  Aligned_cols=81  Identities=19%  Similarity=0.074  Sum_probs=57.7

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE  264 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~  264 (371)
                      +++++|=-| |++.++.++|+.+ ..+++|+.+|.+++.++.+.+.++..+-  ++.++++|+.+.-.         ...
T Consensus        10 ~gK~alITG-as~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~--~~~~~~~Dvs~~~~~~~~~~~~~~~~   86 (255)
T d1fmca_          10 DGKCAIITG-AGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG--QAFACRCDITSEQELSALADFAISKL   86 (255)
T ss_dssp             TTCEEEETT-TTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            466677555 4555666666554 2468999999999999988888877663  58899999875311         113


Q ss_pred             CceeEEEEcCCCCC
Q 017476          265 GKLSGVVSNPPYIP  278 (371)
Q Consensus       265 ~~fDlIvsNPPYi~  278 (371)
                      ++.|++|.|.-+..
T Consensus        87 g~iDilvnnAG~~~  100 (255)
T d1fmca_          87 GKVDILVNNAGGGG  100 (255)
T ss_dssp             SSCCEEEECCCCCC
T ss_pred             CCCCEeeeCCcCCC
Confidence            68999999976543

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=88.79  E-value=0.55  Score=40.54  Aligned_cols=89  Identities=17%  Similarity=0.147  Sum_probs=54.8

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCC-HHHHHHHHHHHHH-cCCCCcEEEEEcCcccccc---------c
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLN-PLAAAVAAFNAQR-YGLQDIIEIRQGSWFGKLK---------D  262 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis-~~al~~A~~n~~~-~gl~~~v~~~~gD~~~~l~---------~  262 (371)
                      +++++|=-|+++| ++.++|+.+ ..+++|+.+|.+ .+.++.+.+.+.. .+  .++.++..|+.+.-.         .
T Consensus         3 ~gK~alITGas~G-IG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~   79 (260)
T d1x1ta1           3 KGKVAVVTGSTSG-IGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHG--VKVLYDGADLSKGEAVRGLVDNAVR   79 (260)
T ss_dssp             TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHT--SCEEEECCCTTSHHHHHHHHHHHHH
T ss_pred             CcCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence            4556775555544 455555443 146799999986 5666666665543 34  348899999875311         1


Q ss_pred             CCCceeEEEEcCCCCCCCCcccch
Q 017476          263 VEGKLSGVVSNPPYIPSDDISGLQ  286 (371)
Q Consensus       263 ~~~~fDlIvsNPPYi~~~~~~~l~  286 (371)
                      ..++.|++|.|--+.....+..++
T Consensus        80 ~~G~iDiLVnnAG~~~~~~~~~~~  103 (260)
T d1x1ta1          80 QMGRIDILVNNAGIQHTALIEDFP  103 (260)
T ss_dssp             HHSCCSEEEECCCCCCCCCGGGCC
T ss_pred             HhCCCcEEEeecccccCCchhhhh
Confidence            136899999997655444444333

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=88.36  E-value=0.65  Score=43.08  Aligned_cols=59  Identities=15%  Similarity=0.164  Sum_probs=47.0

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCC---cEEEEE
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQD---IIEIRQ  253 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~---~v~~~~  253 (371)
                      ++..++|+|+-.|..+..+++... ...+|+++|.++...+..++|++.+...+   ++.++.
T Consensus       212 kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~~n~~~~I~~~~  274 (395)
T d2py6a1         212 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHG  274 (395)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEEC
T ss_pred             CCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcccccccceEEEEE
Confidence            456999999999999888877642 23699999999999999999999876543   455544

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=88.25  E-value=0.58  Score=40.46  Aligned_cols=79  Identities=11%  Similarity=0.047  Sum_probs=55.5

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEcCcccccc---------cC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQ-DIIEIRQGSWFGKLK---------DV  263 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~-~~v~~~~gD~~~~l~---------~~  263 (371)
                      +++.+|=-|++ +.++.++|+++ ..+++|+.+|.+++.++.+.+.+...+.. .++.++++|+.+.-.         ..
T Consensus         4 ~gKvalVTGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (264)
T d1spxa_           4 AEKVAIITGSS-NGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   82 (264)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            45566666655 44555555443 24689999999999999988888877653 469999999865311         11


Q ss_pred             CCceeEEEEcC
Q 017476          264 EGKLSGVVSNP  274 (371)
Q Consensus       264 ~~~fDlIvsNP  274 (371)
                      .++.|++|.|-
T Consensus        83 ~g~iDilvnnA   93 (264)
T d1spxa_          83 FGKLDILVNNA   93 (264)
T ss_dssp             HSCCCEEEECC
T ss_pred             hCCCCEeeccc
Confidence            36899999984

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.65  E-value=0.96  Score=38.74  Aligned_cols=88  Identities=14%  Similarity=0.100  Sum_probs=58.7

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cC
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DV  263 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~  263 (371)
                      .+++++|=-|+++| ++.++|+.+ ..+++|+.+|.+++.++.+.+.+     .+++.+++.|+.+.-.         ..
T Consensus         4 L~gK~alITGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~   77 (244)
T d1nffa_           4 LTGKVALVSGGARG-MGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL-----ADAARYVHLDVTQPAQWKAAVDTAVTA   77 (244)
T ss_dssp             TTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT-----GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----hCcceEEEeecCCHHHHHHHHHHHHHH
Confidence            45678888887766 444444433 14689999999998877665543     2458899999865311         11


Q ss_pred             CCceeEEEEcCCCCCCCCcccchh
Q 017476          264 EGKLSGVVSNPPYIPSDDISGLQV  287 (371)
Q Consensus       264 ~~~fDlIvsNPPYi~~~~~~~l~~  287 (371)
                      .+..|++|.|.-+.....+..++.
T Consensus        78 ~g~idilinnAG~~~~~~~~~~~~  101 (244)
T d1nffa_          78 FGGLHVLVNNAGILNIGTIEDYAL  101 (244)
T ss_dssp             HSCCCEEEECCCCCCCBCTTTSCH
T ss_pred             hCCCeEEEECCcccCCCchhhCCH
Confidence            367999999987766555544443

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=87.45  E-value=0.8  Score=39.43  Aligned_cols=91  Identities=12%  Similarity=0.115  Sum_probs=58.9

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHH-HHcCCCCcEEEEEcCcccccc---------c
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNA-QRYGLQDIIEIRQGSWFGKLK---------D  262 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~-~~~gl~~~v~~~~gD~~~~l~---------~  262 (371)
                      ++++++|=-|.+ +.++.++|+.+ ..+++|+.+|.+.+.++.+.+.+ +..+  .++.++++|+.+.-.         .
T Consensus         7 l~gK~alITGas-~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~   83 (260)
T d1h5qa_           7 FVNKTIIVTGGN-RGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFG--VKTKAYQCDVSNTDIVTKTIQQIDA   83 (260)
T ss_dssp             CTTEEEEEETTT-SHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhC--CceEEEEccCCCHHHHHHHHHHHHH
Confidence            356778888855 45555555543 14689999999987766555544 3444  348899999865311         1


Q ss_pred             CCCceeEEEEcCCCCCCCCcccchh
Q 017476          263 VEGKLSGVVSNPPYIPSDDISGLQV  287 (371)
Q Consensus       263 ~~~~fDlIvsNPPYi~~~~~~~l~~  287 (371)
                      ..++.|++|.|........+..++.
T Consensus        84 ~~g~iDilVnnAg~~~~~~~~~~~~  108 (260)
T d1h5qa_          84 DLGPISGLIANAGVSVVKPATELTH  108 (260)
T ss_dssp             HSCSEEEEEECCCCCCCSCGGGCCH
T ss_pred             HhCCCcEecccccccccCCHHHhcc
Confidence            1478999999987655544444433

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=87.33  E-value=1  Score=38.74  Aligned_cols=87  Identities=17%  Similarity=0.105  Sum_probs=56.8

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE  264 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~  264 (371)
                      +++++|=-|.++| ++.++|+.+ ..+++|+.+|.+.+.++.+.+.+   +  .++..+..|+.+.-.         ...
T Consensus         4 ~gK~alVTGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~---~--~~~~~~~~Dvt~~~~v~~~~~~~~~~~   77 (256)
T d1k2wa_           4 DGKTALITGSARG-IGRAFAEAYVREGARVAIADINLEAARATAAEI---G--PAACAIALDVTDQASIDRCVAELLDRW   77 (256)
T ss_dssp             TTEEEEEETCSSH-HHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHH---C--TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---C--CceEEEEeeCCCHHHHHHHHHHHHHHh
Confidence            4667787786655 444444433 14689999999998877655433   3  358899999865321         113


Q ss_pred             CceeEEEEcCCCCCCCCcccchh
Q 017476          265 GKLSGVVSNPPYIPSDDISGLQV  287 (371)
Q Consensus       265 ~~fDlIvsNPPYi~~~~~~~l~~  287 (371)
                      ++.|++|.|.-+.....+..++.
T Consensus        78 g~iDilVnnAg~~~~~~~~~~~~  100 (256)
T d1k2wa_          78 GSIDILVNNAALFDLAPIVEITR  100 (256)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCH
T ss_pred             CCccEEEeecccccccccccCCH
Confidence            68999999987665555444443

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=87.31  E-value=0.5  Score=40.57  Aligned_cols=126  Identities=16%  Similarity=0.115  Sum_probs=70.9

Q ss_pred             CCCCeEEEECCccc-HHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------c
Q 017476          194 LRDGFWVDLGTGSG-AIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------D  262 (371)
Q Consensus       194 ~~~~~VLDlG~GsG-~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~  262 (371)
                      .+++++|=-|++++ .++.++|+++ ..+++|+..+.+++..+.+.+.....+   +..+++.|..+.-.         .
T Consensus         6 L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~   82 (256)
T d1ulua_           6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALG---GALLFRADVTQDEELDALFAGVKE   82 (256)
T ss_dssp             CTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT---CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhccC---cccccccccCCHHHHHHHHHHHHH
Confidence            35778999987542 2444444332 146799999999887777766655544   36778888765311         1


Q ss_pred             CCCceeEEEEcCCCCCCCC----cccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          263 VEGKLSGVVSNPPYIPSDD----ISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       263 ~~~~fDlIvsNPPYi~~~~----~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      ..++.|++|.|--+.+...    ......+  .++  ..+.-   -+...-.+.+.+..+++++|.++...
T Consensus        83 ~~g~iDilVnnag~~~~~~~~~~~~~~~~~--~~~--~~~~v---n~~~~~~~~~~~~~~~~~~G~Iv~is  146 (256)
T d1ulua_          83 AFGGLDYLVHAIAFAPREAMEGRYIDTRRQ--DWL--LALEV---SAYSLVAVARRAEPLLREGGGIVTLT  146 (256)
T ss_dssp             HHSSEEEEEECCCCCCHHHHSSCGGGCCHH--HHH--HHHHH---HTHHHHHHHHHHTTTEEEEEEEEEEE
T ss_pred             hcCCceEEEeccccccccccccchhhhhhh--hhh--Hhhhh---hHHHHHHHHHHHHHHhccCCEEEEEe
Confidence            1368999998865432211    1111110  000  00000   01122345566778888999887755

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.29  E-value=0.94  Score=38.92  Aligned_cols=77  Identities=19%  Similarity=0.141  Sum_probs=51.7

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cC
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DV  263 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~  263 (371)
                      ++++++|=-|+++| ++.++|+.+ ..+++|+.+|.+++.++...+..     . ++.+++.|+.+.-.         ..
T Consensus         4 l~GK~alITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~-----~-~~~~~~~Dvs~~~~v~~~~~~~~~~   76 (250)
T d1ydea1           4 YAGKVVVVTGGGRG-IGAGIVRAFVNSGARVVICDKDESGGRALEQEL-----P-GAVFILCDVTQEDDVKTLVSETIRR   76 (250)
T ss_dssp             TTTCEEEEETCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----T-TEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc-----C-CCeEEEccCCCHHHHHHHHHHHHHh
Confidence            35778888887665 444454433 24689999999998877655432     2 37889999865311         11


Q ss_pred             CCceeEEEEcCCCC
Q 017476          264 EGKLSGVVSNPPYI  277 (371)
Q Consensus       264 ~~~fDlIvsNPPYi  277 (371)
                      .++.|++|.|.-+.
T Consensus        77 ~g~iDilVnnAG~~   90 (250)
T d1ydea1          77 FGRLDCVVNNAGHH   90 (250)
T ss_dssp             HSCCCEEEECCCCC
T ss_pred             cCCCCEEEeccccc
Confidence            36899999997644

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=87.22  E-value=1.7  Score=36.94  Aligned_cols=121  Identities=18%  Similarity=0.119  Sum_probs=69.6

Q ss_pred             EEEECCcccHHHHHHHHHhC-CCcEEEEEeC-CHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCCCce
Q 017476          199 WVDLGTGSGAIAIGIARVLG-SKGSIIAVDL-NPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEGKL  267 (371)
Q Consensus       199 VLDlG~GsG~~al~la~~~~-~~~~V~gvDi-s~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~~~f  267 (371)
                      +|=-| |++.++.++++.+. .+++|+..|. +++.++.+.+.++..+  .++.+++.|..+.-.         ...++.
T Consensus         4 ~lITG-as~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   80 (244)
T d1edoa_           4 VVVTG-ASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYG--GQAITFGGDVSKEADVEAMMKTAIDAWGTI   80 (244)
T ss_dssp             EEETT-CSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHT--CEEEEEECCTTSHHHHHHHHHHHHHHSSCC
T ss_pred             EEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcC--CcEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence            34444 45557777766542 4578887765 6777777777777666  358899999865311         113789


Q ss_pred             eEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhccc--ccCcEEEEEE
Q 017476          268 SGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASML--KPGGFFAFET  329 (371)
Q Consensus       268 DlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~L--kpgG~lvle~  329 (371)
                      |++|.|.-......+..++.+..+..-..-       +...-.+.+.+.++|  +.+|.++...
T Consensus        81 DiLVnnAg~~~~~~~~~~~~~~~~~~~~vN-------l~~~~~~~~~~~~~m~~~~~G~IVnis  137 (244)
T d1edoa_          81 DVVVNNAGITRDTLLIRMKKSQWDEVIDLN-------LTGVFLCTQAATKIMMKKRKGRIINIA  137 (244)
T ss_dssp             SEEEECCCCCCCCCGGGCCHHHHHHHHHHH-------THHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred             CccccccccccccchhccchHHHHHHHhhh-------hhhHHHHHHHHHHHHHHcCCcEEEEEc
Confidence            999999765555444444433221110000       111223445555555  3578877754

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=87.15  E-value=1.2  Score=38.13  Aligned_cols=89  Identities=20%  Similarity=0.148  Sum_probs=54.2

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE  264 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~  264 (371)
                      +++.+|=-|.++ .++.++|+.+ ..+++|+.+|.++..  .+...++..+  .++.+++.|..+.-.         ...
T Consensus         4 ~gKvalVTGas~-GIG~aia~~la~~Ga~V~~~~~~~~~--~~~~~~~~~g--~~~~~~~~Dvs~~~~v~~~~~~~~~~~   78 (247)
T d2ew8a1           4 KDKLAVITGGAN-GIGRAIAERFAVEGADIAIADLVPAP--EAEAAIRNLG--RRVLTVKCDVSQPGDVEAFGKQVISTF   78 (247)
T ss_dssp             TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESSCCH--HHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCchH--HHHHHHHHcC--CcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            466777777554 4555555443 146799999987642  2333344444  458999999865321         113


Q ss_pred             CceeEEEEcCCCCCCCCcccchhh
Q 017476          265 GKLSGVVSNPPYIPSDDISGLQVE  288 (371)
Q Consensus       265 ~~fDlIvsNPPYi~~~~~~~l~~e  288 (371)
                      ++.|++|.|--+.+...+..++.+
T Consensus        79 G~iDilVnnAG~~~~~~~~~~~~e  102 (247)
T d2ew8a1          79 GRCDILVNNAGIYPLIPFDELTFE  102 (247)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHH
T ss_pred             CCCCEEEECCCCCCCCChHhCCHH
Confidence            689999999766554444444433

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=87.01  E-value=0.72  Score=35.15  Aligned_cols=99  Identities=11%  Similarity=0.001  Sum_probs=64.6

Q ss_pred             CcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc--cc-CCCceeEEEEcCCCCCCC
Q 017476          204 TGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL--KD-VEGKLSGVVSNPPYIPSD  280 (371)
Q Consensus       204 ~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l--~~-~~~~fDlIvsNPPYi~~~  280 (371)
                      ||.|.++..+++.+ .+..|+.+|.+++..+.++.    .|    +.++.||..++-  .. .-.+.+.+++..+     
T Consensus         6 ~G~g~~g~~l~~~L-~~~~i~vi~~d~~~~~~~~~----~~----~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~-----   71 (129)
T d2fy8a1           6 CGWSESTLECLREL-RGSEVFVLAEDENVRKKVLR----SG----ANFVHGDPTRVSDLEKANVRGARAVIVNLE-----   71 (129)
T ss_dssp             ESCCHHHHHHHHTS-CGGGEEEEESCTTHHHHHHH----TT----CEEEESCTTSHHHHHHTTCTTCSEEEECCS-----
T ss_pred             ECCCHHHHHHHHHH-cCCCCEEEEcchHHHHHHHh----cC----ccccccccCCHHHHHHhhhhcCcEEEEecc-----
Confidence            67899999999988 56678999999988765542    23    789999986641  11 1246777777321     


Q ss_pred             CcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHH
Q 017476          281 DISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKN  340 (371)
Q Consensus       281 ~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~  340 (371)
                      +                        +....++-...+.+.|...++..+......+.+..
T Consensus        72 ~------------------------d~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~  107 (129)
T d2fy8a1          72 S------------------------DSETIHCILGIRKIDESVRIIAEAERYENIEQLRM  107 (129)
T ss_dssp             S------------------------HHHHHHHHHHHHHHCSSSCEEEECSSGGGHHHHHH
T ss_pred             c------------------------hhhhHHHHHHHHHHCCCceEEEEEcCHHHHHHHHH
Confidence            0                        11112333445677899899999865555554443

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=86.04  E-value=1.8  Score=37.57  Aligned_cols=87  Identities=13%  Similarity=0.045  Sum_probs=57.7

Q ss_pred             CCCCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------c
Q 017476          193 GLRDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------D  262 (371)
Q Consensus       193 ~~~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~  262 (371)
                      ..+++++|=-|+++| ++.++|+.+ ..+++|+.+|.+.+.++.+.+.+.... ..++.++..|..+.-.         .
T Consensus        22 ~l~gK~alITGas~G-IG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~-g~~~~~~~~D~~~~~~v~~~~~~~~~   99 (294)
T d1w6ua_          22 SFQGKVAFITGGGTG-LGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRDPDMVQNTVSELIK   99 (294)
T ss_dssp             TTTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhc-CCceEEEEecccChHHHHHHhhhhhh
Confidence            345778888887665 555555443 146799999999998877666554332 2348899999865321         1


Q ss_pred             CCCceeEEEEcCCCCCCCC
Q 017476          263 VEGKLSGVVSNPPYIPSDD  281 (371)
Q Consensus       263 ~~~~fDlIvsNPPYi~~~~  281 (371)
                      ..+..|++|.|.-+.....
T Consensus       100 ~~g~iDilvnnAg~~~~~~  118 (294)
T d1w6ua_         100 VAGHPNIVINNAAGNFISP  118 (294)
T ss_dssp             HTCSCSEEEECCCCCCCSC
T ss_pred             hccccchhhhhhhhccccc
Confidence            2478999999976554433

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=85.93  E-value=1.1  Score=36.14  Aligned_cols=94  Identities=23%  Similarity=0.274  Sum_probs=60.5

Q ss_pred             CCCeEEEECC--cccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccc-ccc-cCCCceeEE
Q 017476          195 RDGFWVDLGT--GSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG-KLK-DVEGKLSGV  270 (371)
Q Consensus       195 ~~~~VLDlG~--GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~-~l~-~~~~~fDlI  270 (371)
                      ++..||=-|.  |.|.+++.+|+.+  +++|+++.-+++-.+.+++    .|... + +...|+.. ... ...+.+|+|
T Consensus        23 ~~~~VLV~gaaGgVG~~avQlAk~~--Ga~Viat~~s~~k~~~~~~----lGad~-v-i~~~~~~~~~~~~~~~~gvd~v   94 (167)
T d1tt7a2          23 EKGSVLVTGATGGVGGIAVSMLNKR--GYDVVASTGNREAADYLKQ----LGASE-V-ISREDVYDGTLKALSKQQWQGA   94 (167)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHH--TCCEEEEESSSSTHHHHHH----HTCSE-E-EEHHHHCSSCCCSSCCCCEEEE
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHc--CCceEEEecCHHHHHHHHh----hcccc-e-EeccchhchhhhcccCCCceEE
Confidence            3446777664  4667899999986  6899999999877776654    45432 2 22233222 111 113579988


Q ss_pred             EEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       271 vsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      +-+                         .+|        ..+..+.+.|+++|++++.-
T Consensus        95 id~-------------------------vgg--------~~~~~~~~~l~~~G~iv~~G  120 (167)
T d1tt7a2          95 VDP-------------------------VGG--------KQLASLLSKIQYGGSVAVSG  120 (167)
T ss_dssp             EES-------------------------CCT--------HHHHHHHTTEEEEEEEEECC
T ss_pred             Eec-------------------------CcH--------HHHHHHHHHhccCceEEEee
Confidence            752                         111        45667779999999998753

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=85.86  E-value=0.59  Score=37.96  Aligned_cols=47  Identities=23%  Similarity=0.140  Sum_probs=37.2

Q ss_pred             CCCCCCeEEEECCcc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 017476          192 DGLRDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN  239 (371)
Q Consensus       192 ~~~~~~~VLDlG~Gs-G~~al~la~~~~~~~~V~gvDis~~al~~A~~n  239 (371)
                      ...++..|+=.|+|. |..++.+++.+ ...+|+++|.+++-++.|++.
T Consensus        26 ~~~~g~tVlI~G~GgvGl~ai~~ak~~-G~~~Vi~vd~~~~kl~~Ak~~   73 (176)
T d1d1ta2          26 KVKPGSTCVVFGLGGVGLSVIMGCKSA-GASRIIGIDLNKDKFEKAMAV   73 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHH
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHc-CCceEEEecCcHHHHHHHHhc
Confidence            345678999999984 45677777775 447999999999999998864

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=85.86  E-value=1.2  Score=37.95  Aligned_cols=121  Identities=15%  Similarity=0.133  Sum_probs=69.8

Q ss_pred             EEEECCcccHHHHHHHHHhC-CCc-------EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc---------c
Q 017476          199 WVDLGTGSGAIAIGIARVLG-SKG-------SIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL---------K  261 (371)
Q Consensus       199 VLDlG~GsG~~al~la~~~~-~~~-------~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l---------~  261 (371)
                      ||=-|+++| ++.++|+.+. .++       .|+.++.+++.++.+.+.+...|  .++.++.+|..+.-         .
T Consensus         4 vlITGas~G-IG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~   80 (240)
T d2bd0a1           4 LLITGAGKG-IGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEG--ALTDTITADISDMADVRRLTTHIV   80 (240)
T ss_dssp             EEEETTTSH-HHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTT--CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             EEEccCCCH-HHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHH
Confidence            455566665 5554544431 122       49999999999988888777665  35889999986531         1


Q ss_pred             cCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccc--cCcEEEEEE
Q 017476          262 DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLK--PGGFFAFET  329 (371)
Q Consensus       262 ~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~Lk--pgG~lvle~  329 (371)
                      ...+..|++|.|.-+.....+..++.+.....-..-       +...-.+.+.+.++|+  .+|.++...
T Consensus        81 ~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vN-------l~g~~~~~~~~~~~m~~~~~G~Ii~is  143 (240)
T d2bd0a1          81 ERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTN-------LKGTFFLTQALFALMERQHSGHIFFIT  143 (240)
T ss_dssp             HHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHH-------THHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred             HHcCCcceeecccccccCCccccCCHHHHhhcCCEe-------ehHHHHHHHHHhHHHHhcCCCceEEEe
Confidence            124789999999766555444444333211100000       1112234455555664  467777754

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.64  E-value=1.9  Score=36.63  Aligned_cols=87  Identities=16%  Similarity=0.071  Sum_probs=55.9

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc-----cCCCce
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-----DVEGKL  267 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~-----~~~~~f  267 (371)
                      ..++++|=.|.++| ++.++|+.+ ..+++|+.+|.+++.++.+.+..     . .+..++.|+.+.-.     ..-++.
T Consensus         5 L~GK~~lITGas~G-IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~-----~-~~~~~~~Dv~d~~~v~~~~~~~g~i   77 (244)
T d1pr9a_           5 LAGRRVLVTGAGKG-IGRGTVQALHATGARVVAVSRTQADLDSLVREC-----P-GIEPVCVDLGDWEATERALGSVGPV   77 (244)
T ss_dssp             CTTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS-----T-TCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc-----C-CCeEEEEeCCCHHHHHHHHHHhCCc
Confidence            35778888887665 444444433 14689999999998877654432     2 37788888865311     113789


Q ss_pred             eEEEEcCCCCCCCCcccchh
Q 017476          268 SGVVSNPPYIPSDDISGLQV  287 (371)
Q Consensus       268 DlIvsNPPYi~~~~~~~l~~  287 (371)
                      |++|.|-.......+..++.
T Consensus        78 DilVnnAg~~~~~~~~~~~~   97 (244)
T d1pr9a_          78 DLLVNNAAVALLQPFLEVTK   97 (244)
T ss_dssp             CEEEECCCCCCCBCGGGCCH
T ss_pred             eEEEeccccccccchhhhhH
Confidence            99999976655544444433

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=85.63  E-value=1.7  Score=36.81  Aligned_cols=122  Identities=18%  Similarity=0.119  Sum_probs=67.3

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE  264 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~  264 (371)
                      +++++|=.|+++| ++.++|+.+ ..+++|+.++.+.+.++...+   ..  ..++.+++.|+.+.-.         ...
T Consensus         4 ~gK~alItGas~G-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~---~~--~~~~~~~~~Dls~~~~i~~~~~~i~~~~   77 (241)
T d2a4ka1           4 SGKTILVTGAASG-IGRAALDLFAREGASLVAVDREERLLAEAVA---AL--EAEAIAVVADVSDPKAVEAVFAEALEEF   77 (241)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH---TC--CSSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH---Hc--CCceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            5667887777654 444444443 246899999999987654433   23  3568899999865311         113


Q ss_pred             CceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          265 GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       265 ~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      ++.|++|.|-.......+..++.+.....-...       +.....+.+.+..+++.++.+++..
T Consensus        78 g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n-------~~~~~~~~k~~~~~~~~~~~i~~~s  135 (241)
T d2a4ka1          78 GRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVN-------LTGSFLVARKAGEVLEEGGSLVLTG  135 (241)
T ss_dssp             SCCCEEEEGGGGTTTTC----CHHHHHHHHHHH-------HHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred             CCccEeccccccccccchhhhhccccccccccc-------cccccccccccccccccccceeecc
Confidence            689999999544333333333322211000000       1122244555566777777766543

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=85.63  E-value=1.2  Score=38.15  Aligned_cols=120  Identities=18%  Similarity=0.176  Sum_probs=66.8

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cC
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DV  263 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~  263 (371)
                      ++++++|=-|.++| ++.++|+.+ ..+++|+.+|.+++..+.+++    .+    ..+++.|..+.-.         ..
T Consensus         3 l~GK~alITGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~----~~----~~~~~~Dv~~~~~v~~~~~~~~~~   73 (248)
T d2d1ya1           3 FAGKGVLVTGGARG-IGRAIAQAFAREGALVALCDLRPEGKEVAEA----IG----GAFFQVDLEDERERVRFVEEAAYA   73 (248)
T ss_dssp             TTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSTTHHHHHHH----HT----CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----cC----CeEEEEeCCCHHHHHHHHHHHHHh
Confidence            35678888785554 555555543 246899999999987765543    22    4677888865311         11


Q ss_pred             CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhccccc--CcEEEEEE
Q 017476          264 EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKP--GGFFAFET  329 (371)
Q Consensus       264 ~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~Lkp--gG~lvle~  329 (371)
                      .++.|++|.|--......+..++.+.  |+-....-     +...-.+.+.+..+|++  +|.++...
T Consensus        74 ~G~iDiLVnnAG~~~~~~~~~~~~e~--~~~~~~vN-----l~g~~~~~~~~~p~m~~~~~G~Ii~is  134 (248)
T d2d1ya1          74 LGRVDVLVNNAAIAAPGSALTVRLPE--WRRVLEVN-----LTAPMHLSALAAREMRKVGGGAIVNVA  134 (248)
T ss_dssp             HSCCCEEEECCCCCCCBCTTTCCHHH--HHHHHHHH-----THHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             cCCCCeEEEeCcCCCCCChhhCCHHH--HHHHHHhh-----hhhHhhhhhhhcccccccccccccccc
Confidence            36899999996554444433333322  11111000     11122455555566643  57777653

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.34  E-value=1.7  Score=37.30  Aligned_cols=83  Identities=13%  Similarity=0.050  Sum_probs=54.6

Q ss_pred             CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE  264 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~  264 (371)
                      +++++|=-|+++| ++.++|+.+ ..+++|+.++.+.+.++.+.+......- ..+.+...|..+...         ...
T Consensus        13 ~GK~alITGassG-IG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~   90 (269)
T d1xu9a_          13 QGKKVIVTGASKG-IGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGA-ASAHYIAGTMEDMTFAEQFVAQAGKLM   90 (269)
T ss_dssp             TTCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTC-SEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhhc-ccchhhhhhhhhHHHHHHHHHHHHHHh
Confidence            5678888887777 444444433 1468999999999999888776554432 347778877653211         113


Q ss_pred             CceeEEEEcCCCCCC
Q 017476          265 GKLSGVVSNPPYIPS  279 (371)
Q Consensus       265 ~~fDlIvsNPPYi~~  279 (371)
                      +..|+++.|--....
T Consensus        91 g~~~~li~nag~~~~  105 (269)
T d1xu9a_          91 GGLDMLILNHITNTS  105 (269)
T ss_dssp             TSCSEEEECCCCCCC
T ss_pred             CCccccccccccccc
Confidence            678999988655433

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.26  E-value=3.2  Score=36.24  Aligned_cols=93  Identities=17%  Similarity=0.036  Sum_probs=61.1

Q ss_pred             CCCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcC---CCCcEEEEEcCcccccc--------
Q 017476          194 LRDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYG---LQDIIEIRQGSWFGKLK--------  261 (371)
Q Consensus       194 ~~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~g---l~~~v~~~~gD~~~~l~--------  261 (371)
                      .+++++|=-|+++| ++.++|+.+ ..+++|+.+|.+.+.++.+.+.+....   ...++..+++|+.+.-.        
T Consensus        10 L~gKvalITGas~G-IG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~   88 (297)
T d1yxma1          10 LQGQVAIVTGGATG-IGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST   88 (297)
T ss_dssp             TTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHH
Confidence            46778888776655 555555443 246899999999999888777665432   23468999999865311        


Q ss_pred             -cCCCceeEEEEcCCCCCCCCcccchh
Q 017476          262 -DVEGKLSGVVSNPPYIPSDDISGLQV  287 (371)
Q Consensus       262 -~~~~~fDlIvsNPPYi~~~~~~~l~~  287 (371)
                       ...++.|++|.|........+..++.
T Consensus        89 ~~~~G~iDiLVnnAg~~~~~~~~~~~~  115 (297)
T d1yxma1          89 LDTFGKINFLVNNGGGQFLSPAEHISS  115 (297)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGCCH
T ss_pred             HHHhCCeEEEEeeccccccCchhhhhh
Confidence             11368999999976544444443333

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=83.11  E-value=1.1  Score=36.46  Aligned_cols=51  Identities=20%  Similarity=0.167  Sum_probs=33.0

Q ss_pred             CCCCeEEEE--CCc-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC
Q 017476          194 LRDGFWVDL--GTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ  246 (371)
Q Consensus       194 ~~~~~VLDl--G~G-sG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~  246 (371)
                      .++..|+=+  |+| .|..++.+|+.+  +++|+++--+++..+...+.++..|..
T Consensus        27 ~~g~~vli~~ga~g~vG~~aiqlAk~~--Ga~vI~~v~~~~~~~~~~~~~~~lGad   80 (189)
T d1gu7a2          27 TPGKDWFIQNGGTSAVGKYASQIGKLL--NFNSISVIRDRPNLDEVVASLKELGAT   80 (189)
T ss_dssp             CTTTCEEEESCTTSHHHHHHHHHHHHH--TCEEEEEECCCTTHHHHHHHHHHHTCS
T ss_pred             CCCCEEEEEeCCCchHHHHHHHHHhhc--CCeEEEEEecccccchHHhhhhhcccc
Confidence            345567776  333 467888899986  678888755555555555555667754

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=82.41  E-value=1.8  Score=37.19  Aligned_cols=89  Identities=13%  Similarity=0.065  Sum_probs=57.4

Q ss_pred             CCCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCH-HHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cC
Q 017476          195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNP-LAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DV  263 (371)
Q Consensus       195 ~~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~-~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~  263 (371)
                      +++++|=-|.++| ++.++|+.+. .+++|+.++.+. +.++.+.+.++..+.  ++.+++.|+.+.-.         ..
T Consensus         6 ~gK~alITGas~G-IG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (261)
T d1geea_           6 EGKVVVITGSSTG-LGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGG--EAIAVKGDVTVESDVINLVQSAIKE   82 (261)
T ss_dssp             TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC--EEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHH
Confidence            4667776666655 5555555431 467999999874 566767777776653  58899999865311         11


Q ss_pred             CCceeEEEEcCCCCCCCCcccch
Q 017476          264 EGKLSGVVSNPPYIPSDDISGLQ  286 (371)
Q Consensus       264 ~~~fDlIvsNPPYi~~~~~~~l~  286 (371)
                      .++.|++|.|.-......+..++
T Consensus        83 ~G~iDiLVnnAG~~~~~~~~~~~  105 (261)
T d1geea_          83 FGKLDVMINNAGLENPVSSHEMS  105 (261)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCC
T ss_pred             hCCCCEeeccceecCCcchhhcC
Confidence            36899999997655444443333

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=81.70  E-value=3.1  Score=37.69  Aligned_cols=131  Identities=17%  Similarity=0.086  Sum_probs=65.8

Q ss_pred             CCeEEEECCcccHHHHHHHH-------H--------hCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CC--cEEEEEcCcc
Q 017476          196 DGFWVDLGTGSGAIAIGIAR-------V--------LGSKGSIIAVDLNPLAAAVAAFNAQRYGL-QD--IIEIRQGSWF  257 (371)
Q Consensus       196 ~~~VLDlG~GsG~~al~la~-------~--------~~~~~~V~gvDis~~al~~A~~n~~~~gl-~~--~v~~~~gD~~  257 (371)
                      .-+|+|+||.+|..++.+..       +        -.|..+|+--|+-..=....=+++...+- ..  -+.-+.|+++
T Consensus        52 ~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY  131 (359)
T d1m6ex_          52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY  131 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred             ceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchh
Confidence            35799999999987743321       1        02345777777754333322222211110 01  1344567776


Q ss_pred             cccccCCCceeEEEEcCCCCCCCCcccchhhhcc-----c----CccccccCC-CCcHHHHHHHHHHHhcccccCcEEEE
Q 017476          258 GKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGK-----H----EPRLALDGG-VDGLDYLLHLCNGTASMLKPGGFFAF  327 (371)
Q Consensus       258 ~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~-----~----ep~~aL~gg-~dGl~~~~~il~~a~~~LkpgG~lvl  327 (371)
                      ..+-. .+..++++|----.+-...   +.++..     |    .|......- +..-.++..||+.-.+-|+|||.+++
T Consensus       132 ~rLfP-~~Slh~~~Ss~alHWLS~v---P~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl  207 (359)
T d1m6ex_         132 GRLFP-RNTLHFIHSSYSLMWLSQV---PIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVL  207 (359)
T ss_dssp             SCCSC-TTCBSCEEEESCTTBCSSC---CSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEE
T ss_pred             hhcCC-CCceEEeeehhhhhhhhcC---CccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence            65533 4678888772111111100   001100     0    000000000 01135677889888999999999999


Q ss_pred             EEC
Q 017476          328 ETN  330 (371)
Q Consensus       328 e~~  330 (371)
                      ...
T Consensus       208 ~~~  210 (359)
T d1m6ex_         208 TIL  210 (359)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            763

>d2dpma_ c.66.1.28 (A:) DNA methylase DpnM {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N6 adenine-specific DNA methylase, DAM
domain: DNA methylase DpnM
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=81.55  E-value=5.5  Score=33.75  Aligned_cols=83  Identities=17%  Similarity=0.287  Sum_probs=48.5

Q ss_pred             cEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEE
Q 017476          248 IIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF  327 (371)
Q Consensus       248 ~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvl  327 (371)
                      ++++..+|+.+.+... ++-|+|.++|||..........    .+      ....-+.++..++.+.+..+-+.||.+++
T Consensus       161 ~~~i~~~d~~~~~~~~-~~~dfvYlDPPY~~~~~~~~~~----~Y------~~~~f~~~dh~~l~~~~~~l~~~~~k~il  229 (275)
T d2dpma_         161 QLEIKVGDFEKAIVDV-RTGDFVYFDPPYIPLSETSAFT----SY------THEGFSFADQVRLRDAFKRLSDTGAYVML  229 (275)
T ss_dssp             EEEEEESCGGGGGTTC-CTTCEEEECCCCCCC-----CC----CC------CCSSCCHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred             hhhhhhhhHHHHhhhh-ccCcEEEecCCCCCcccccCcc----cc------cccCCcHHHHHHHHHHHHHHHhcCCeEEE
Confidence            4889999997765542 4568999999998653311000    00      00112345555555555445567888887


Q ss_pred             EECCcCcHHHHHHHHhc
Q 017476          328 ETNGEKQCKFLKNYLEN  344 (371)
Q Consensus       328 e~~~~~q~~~v~~~l~~  344 (371)
                      ...   ..+.+++++..
T Consensus       230 Sy~---~~~~ir~ly~~  243 (275)
T d2dpma_         230 SNS---SSALVEELYKD  243 (275)
T ss_dssp             EEE---SCHHHHHHTTT
T ss_pred             EeC---CCHHHHHHHhC
Confidence            773   23668888763

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=81.10  E-value=1.2  Score=35.86  Aligned_cols=46  Identities=20%  Similarity=0.061  Sum_probs=36.2

Q ss_pred             CCCCCCeEEEECCcc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476          192 DGLRDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (371)
Q Consensus       192 ~~~~~~~VLDlG~Gs-G~~al~la~~~~~~~~V~gvDis~~al~~A~~  238 (371)
                      ...++.+|+=+|||. |..++.+++.. ...+|+++|.+++-++.|++
T Consensus        24 ~~~~G~~VlV~GaGgvGl~a~~~ak~~-G~~~Vi~~d~~~~kl~~a~~   70 (174)
T d1p0fa2          24 KVTPGSTCAVFGLGGVGFSAIVGCKAA-GASRIIGVGTHKDKFPKAIE   70 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHc-CCceeeccCChHHHHHHHHH
Confidence            455678999999985 45666777775 45689999999999998875

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=80.47  E-value=2.4  Score=35.71  Aligned_cols=128  Identities=19%  Similarity=0.114  Sum_probs=70.4

Q ss_pred             CCCCeEEEECCcc--c---HHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc--------
Q 017476          194 LRDGFWVDLGTGS--G---AIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL--------  260 (371)
Q Consensus       194 ~~~~~VLDlG~Gs--G---~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l--------  260 (371)
                      .+++++|=.|+++  |   .++..+++   .+++|+.++.+++..+.+.+.....+-   ......|..+..        
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~---~G~~V~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~   76 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHR---EGAELAFTYQNDKLKGRVEEFAAQLGS---DIVLQCDVAEDASIDTMFAE   76 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHH---TTCEEEEEESSTTTHHHHHHHHHHTTC---CCEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHH---cCCEEEEEeCCHHHHHHHHHHHhhcCC---cceeecccchHHHHHHHHHH
Confidence            3577888888766  4   24445554   468999999998888877776666553   445555543321        


Q ss_pred             -ccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          261 -KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       261 -~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                       ....+..|.+|.|.-+.....+.....+....+-.....  .--......+.+.+...+++|+.+++..
T Consensus        77 ~~~~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Ii~is  144 (258)
T d1qsga_          77 LGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAH--DISSYSFVAMAKACRSMLNPGSALLTLS  144 (258)
T ss_dssp             HHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHH--HHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             hhhcccccceEEEeecccccccccccccccchHHHHHHHH--HHHHHHHHHHHHHHHHhccCCcEEEEec
Confidence             122478999999866543322211111100000000000  0001223355666777888888877644

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=80.11  E-value=0.84  Score=37.23  Aligned_cols=90  Identities=19%  Similarity=0.202  Sum_probs=56.2

Q ss_pred             CCeEEEECC--cccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcC---cccccccCCCceeEE
Q 017476          196 DGFWVDLGT--GSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGS---WFGKLKDVEGKLSGV  270 (371)
Q Consensus       196 ~~~VLDlG~--GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD---~~~~l~~~~~~fDlI  270 (371)
                      +++||=.|.  |.|.+++.+|+.+  +++|+++.-+++..+.+++    .|..   .++.-+   +.+.+.  ...+|.|
T Consensus        32 ~~~vlV~gasGGVG~~aiQlAk~~--Ga~Via~~~~~~k~~~~~~----lGad---~vi~~~~~~~~~~l~--~~~~~~v  100 (177)
T d1o89a2          32 DGEIVVTGASGGVGSTAVALLHKL--GYQVVAVSGRESTHEYLKS----LGAS---RVLPRDEFAESRPLE--KQVWAGA  100 (177)
T ss_dssp             GCEEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCGGGHHHHHH----HTEE---EEEEGGGSSSCCSSC--CCCEEEE
T ss_pred             CCcEEEEEccccchHHHHHHHHHc--CCCeEEEecchhHHHHHHh----hccc---cccccccHHHHHHHH--hhcCCee
Confidence            346776553  3567888999985  7899999999988777654    3432   222222   222222  2457877


Q ss_pred             EEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476          271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET  329 (371)
Q Consensus       271 vsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~  329 (371)
                      +-+                         .+|        ..+....+.|+++|+++..-
T Consensus       101 vD~-------------------------Vgg--------~~~~~~l~~l~~~Griv~~G  126 (177)
T d1o89a2         101 IDT-------------------------VGD--------KVLAKVLAQMNYGGCVAACG  126 (177)
T ss_dssp             EES-------------------------SCH--------HHHHHHHHTEEEEEEEEECC
T ss_pred             EEE-------------------------cch--------HHHHHHHHHhccccceEeec
Confidence            631                         011        34566778999999998853

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=80.02  E-value=0.85  Score=34.88  Aligned_cols=66  Identities=14%  Similarity=0.187  Sum_probs=44.6

Q ss_pred             eEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc--ccC-CCceeEEEE
Q 017476          198 FWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL--KDV-EGKLSGVVS  272 (371)
Q Consensus       198 ~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l--~~~-~~~fDlIvs  272 (371)
                      +|+=  ||.|.++..+++.+. .+..|+.+|.+++.++.++..   .+    +.++.||..+..  ... -...|.+++
T Consensus         2 ~IvI--~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~---~~----~~vi~Gd~~~~~~l~~~~i~~a~~vv~   71 (132)
T d1lssa_           2 YIII--AGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE---ID----ALVINGDCTKIKTLEDAGIEDADMYIA   71 (132)
T ss_dssp             EEEE--ECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---CS----SEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred             EEEE--ECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh---hh----hhhccCcccchhhhhhcChhhhhhhcc
Confidence            3444  455888888887652 356899999999988866543   22    678999986531  111 246788876