Citrus Sinensis ID: 017478

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-
Protein Sequence
MFQHHKKPSSMNSHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGLDLQRNTASSSGVIGRSMNDNSHMVDAIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETVTPASFKGTIGNQAVPDVGTMKDFCPPLNFSQFQDLNLYGGDQIDHLQQNMDRQSSLDHGFMQSNDNICLGKKRPSPYNGGSGTGKSPLMWSDDLRLQDLATPPCIGPQDDPFKGDQIQIAPPSNDLDSISDIYETKPVLSGDAVSSEKKFEASSAKLERPSPRRTPISTERMNPAMMNTGGMQQGRNSPYG
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHcccccEEEEEHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccEEEcccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccc
Coil and Loop (DISEMBL)
mfqhhkkpssmnshhdrplcvqgdsglvlttdpkprlrwTVELHERFVDAVtqlggpdkatpkTIMRVMGVKGLTLYHLKSHLqkfrlgkqphkefndhsikdgldlqrntasssgvigrsmndnshMVDAIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTlasgetvtpasfkgtignqavpdvgtmkdfcpplnfsqfqdlnlyggdqidhlqqnmdrqssldhgfmqsndniclgkkrpspynggsgtgksplmwsddlrlqdlatppcigpqddpfkgdqiqiappsndldsisdiyetkpvlsgdavssekkfeassaklerpsprrtpistermnpammntggmqqgrnspyg
Flexible Loop (DISEMBL)
mfqhhkkpssmnshhdrplcVQGDSGLVLTTDPKPRLRWTVELHERFVDavtqlggpdkatpktIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGLDLQRNTASssgvigrsmndnSHMVDAIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETVTPASFKGTIGNQAVPDVGTMKDFCPPLNFSQFQDLNLYGGDQIDHLQQNMDRQSSLDHGFMQSNDNICLGKKRPSPYNGGSGTGKSPLMWSDDLRLQDLATPPCIGPQDDPFKGDQIQIAPPSNDLDSISDIYETKpvlsgdavssekkfeassaklerpsprrtpistermnpammntggmqqgrnspyg
Low Complexity Region (SEG)
MFQHHKKPSSMNSHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGLDLQRNTASSSGVIGRSMNDNSHMVDAIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETVTPASFKGTIGNQAVPDVGTMKDFCPPLNFSQFQDLNLYGGDQIDHLQQNMDRQSSLDHGFMQSNDNICLGKKRPSPYNGGSGTGKSPLMWSDDLRLQDLATPPCIGPQDDPFKGDQIQIAPPSNDLDSISDIYETKPVLSGDavssekkfeassakleRPSPRRTPISTERMNPAMMNTGGMQQGRNSPYG
Disordered region (IsUnstruct)
*******************CVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL*****************************************************LHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETVTPASFKGTIGNQAVPDVGTMKDFCPPLNFSQFQDLNLYGGDQID***************************************************************************************************************************************************
Disordered Region (DISOPRED)
*************************************RWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQK**********************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
***************DRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGLDLQRNTASSSGVIGRSMNDNSHMVDAIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETVTPASFKGTIGNQAVPDVGTMKDFCPPLNFSQFQDLNLYGGDQIDHLQQNMDRQSSLDHGFMQSNDNICLGKKRPSPYNGGSGTGKSPLMWSDDLRLQDLATPPCIGPQDDPFKGDQIQIAPPSNDLDSISDIYETKPVL************************RTPISTERMNPAMMNTGG**********
Disordered Region (DISPRO)
**********************************PRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQP********************************NSHMVDAIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLA*******************************************************************************************************LATPPCIGPQDDPFKGDQIQIAPPSNDLDSISDIYETK*******************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFQHHKKPSSMNSHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGLDLQRNTASSSGVIGRSMNDNSHMVDAIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETVTPASFKGTIGNQAVPDVGTMKDFCPPLNFSQFQDLNLYGGDQIDHLQQNMDRQSSLDHGFMQSNDNICLGKKRPSPYNGGSGTGKSPLMWSDDLRLQDLATPPCIGPQDDPFKGDQIQIAPPSNDLDSISDIYETKPVLSGDAVSSEKKFEASSAKLERPSPRRTPISTERMNPAMMNTGGMQQGRNSPYG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	371	2.2.26 [Sep-21-2011]
Q9SAK5	358	Myb family transcription	yes	no	0.911	0.944	0.588	1e-103
Q8GUN5	413	Protein PHR1-LIKE 1 OS=Ar	no	no	0.431	0.387	0.433	3e-31
Q700D9	255	Putative Myb family trans	no	no	0.183	0.266	0.506	8e-14
Q93WJ9	403	Transcription repressor K	no	no	0.161	0.148	0.566	4e-13
Q9C616	388	Probable transcription fa	no	no	0.161	0.154	0.566	5e-13
Q0J235	532	Probable transcription fa	no	no	0.188	0.131	0.514	7e-13
Q9FJV5	276	Probable transcription fa	no	no	0.150	0.202	0.571	3e-12
Q941I2	322	Probable transcription fa	no	no	0.161	0.186	0.533	4e-12
Q9ZWJ9	664	Two-component response re	no	no	0.226	0.126	0.450	2e-11
Q940D0	690	Two-component response re	no	no	0.145	0.078	0.563	2e-10

>sp|Q9SAK5|APL_ARATH Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2

 Score =  374 bits (960), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 230/391 (58%), Positives = 270/391 (69%), Gaps = 53/391 (13%)

Query: 1   MFQHHKKPSSMN-SHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDK 59
           MF H KKPSSMN S+ +R +CVQGDSGLVLTTDPKPRLRWTVELHERFVDAV QLGGPDK
Sbjct: 1   MF-HAKKPSSMNGSYENRAMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDK 59

Query: 60  ATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDG-----LDLQRNTASS 114
           ATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKE+ DHS K+G     +D+QRN ASS
Sbjct: 60  ATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEYGDHSTKEGSRASAMDIQRNVASS 119

Query: 115 SGVIGRSMNDNSHMVDAIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTL 174
           SG++ R+MN+         MQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILE+ACQTL
Sbjct: 120 SGMMSRNMNE---------MQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILERACQTL 170

Query: 175 ASGETV--------TPASFKGTIGNQAVPDVGTMKDFCPPLNFSQFQDLNLYGG--DQI- 223
           A GE +            +KG +G+ ++     +     PL+F  FQDLN+YG   DQ+ 
Sbjct: 171 A-GENMAAATAAAAVGGGYKGNLGSSSLS--AAVGPPPHPLSFPPFQDLNIYGNTTDQVL 227

Query: 224 DHLQQNMDRQSSLDH--GFMQSNDNICLGKKRPSPYNGGSGTGKSPLMWSDDLRLQDLAT 281
           DH   N   Q+  +H  G   ++ NI LGKKRP+P N G+   K  LMWSD  +  DL+ 
Sbjct: 228 DH--HNFHHQNIENHFTGNNAADTNIYLGKKRPNP-NFGNDVRKGLLMWSD--QDHDLSA 282

Query: 282 PPCIGPQDDPFKGDQIQIAP-PSNDLDSISDIYETKPVLSGDAVSSEKKFEASSAKLERP 340
              I   DD  +  QIQ+A   S DLDS+S+IYE K  LSGD  ++  K       LERP
Sbjct: 283 NQSI---DDEHR-IQIQMATHVSTDLDSLSEIYERKSGLSGDEGNNGGKL------LERP 332

Query: 341 SPRRTPISTERMNPAMMNTGGMQQGRNSPYG 371
           SPRR+P+S     P M   GG+ QGRNSP+G
Sbjct: 333 SPRRSPLS-----PMMNPNGGLIQGRNSPFG 358

Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8GUN5|PHL1_ARATH Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1 PE=1 SV=1

 Score =  135 bits (341), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 72/166 (43%), Positives = 106/166 (63%), Gaps = 6/166 (3%)

Query: 34  KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGK-QP 92
           K R+RWT ELHE FV+AV QLGG ++ATPK +++++   GLT+YH+KSHLQK+R  + +P
Sbjct: 231 KQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQKYRTARYKP 290

Query: 93  HKEFNDHSIKDGLDLQRNTASSSGVIGRSMNDNSHMVDAIRMQMEVQRRLHEQLEVQRHL 152
                + S   G   ++   S   +    M  +  +  A+R+QMEVQ+RLHEQLE+QR L
Sbjct: 291 -----ETSEVTGEPQEKKMTSIEDIKSLDMKTSVEITQALRLQMEVQKRLHEQLEIQRSL 345

Query: 153 QLRIEAQGKYMQSILEKACQTLASGETVTPASFKGTIGNQAVPDVG 198
           QL+IE QG+Y+Q + EK  +   +  + + AS K   G+ A  +VG
Sbjct: 346 QLQIEKQGRYLQMMFEKQQKIQDNKSSSSEASPKQCNGSFAEVEVG 391

Transcription factor acting as central integrator of phosphate starvation responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2

 Score = 78.6 bits (192), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 48/73 (65%), Gaps = 5/73 (6%)

Query: 20 CVQGDSGLV-----LTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGL 74
          C + + G++         P PRLRWT ELH  FV AV  LGG  KATPK ++++M VKGL
Sbjct: 4  CGRSNDGVIGGVRPYVRSPVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGL 63

Query: 75 TLYHLKSHLQKFR 87
          T+ H+KSHLQ +R
Sbjct: 64 TISHVKSHLQMYR 76

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WJ9|KAN1_ARATH Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1

 Score = 76.3 bits (186), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 44/60 (73%)

Query: 35  PRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHK 94
           PR+RWT  LH RFV AV  LGG ++ATPK+++ +M VK LTL H+KSHLQ +R  K  +K
Sbjct: 220 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTNK 279

Transcriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C616|KAN2_ARATH Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1

 Score = 75.9 bits (185), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 43/60 (71%)

Query: 35  PRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHK 94
           PR+RWT  LH RFV AV  LGG ++ATPK+++ +M VK LTL H+KSHLQ +R  K   K
Sbjct: 214 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDK 273

Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0J235|ROLL9_ORYSJ Probable transcription factor RL9 OS=Oryza sativa subsp. japonica GN=RL9 PE=2 SV=2

 Score = 75.5 bits (184), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 36/70 (51%), Positives = 45/70 (64%)

Query: 35  PRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHK 94
           PR+RWT  LH RFV AV  LGG ++ATPK+++ +M VK LTL H+KSHLQ +R  K   K
Sbjct: 325 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKSTDK 384

Query: 95  EFNDHSIKDG 104
                   DG
Sbjct: 385 PAASSGPADG 394

Probable transcription factor that regulates abaxial identity during leaf development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FJV5|KAN4_ARATH Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1

 Score = 73.2 bits (178), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/56 (57%), Positives = 41/56 (73%)

Query: 35  PRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGK 90
           PR+RWT  LH  FV AV  LGG ++ATPK+++ +M VK LTL H+KSHLQ +R  K
Sbjct: 106 PRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVK 161

Probable transcritpion factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds.

Arabidopsis thaliana (taxid: 3702)

>sp|Q941I2|KAN3_ARATH Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 42/60 (70%)

Query: 35  PRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHK 94
           PR+RWT  LH  FV AV  LGG ++ATPK+++ +M V+ LTL H+KSHLQ +R  K   K
Sbjct: 165 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRTIKSTEK 224

Probable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZWJ9|ARR2_ARATH Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1

 Score = 70.9 bits (172), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/91 (45%), Positives = 55/91 (60%), Gaps = 7/91 (7%)

Query: 22  QGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKS 81
           QGD     ++  KPR+ W+VELH++FV AV QLG  DKA PK I+ +M V GLT  ++ S
Sbjct: 204 QGDDKEDSSSLKKPRVVWSVELHQQFVAAVNQLG-VDKAVPKKILEMMNVPGLTRENVAS 262

Query: 82  HLQKFRL------GKQPHKEFNDHSIKDGLD 106
           HLQK+R+      G   H+   +HS   G D
Sbjct: 263 HLQKYRIYLRRLGGVSQHQGNMNHSFMTGQD 293

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway.

Arabidopsis thaliana (taxid: 3702)

>sp|Q940D0|ARR1_ARATH Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2

 Score = 67.4 bits (163), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 42/55 (76%), Gaps = 1/55 (1%)

Query: 34  KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 88
           KPR+ W+VELH++FV AV QLG  +KA PK I+ +M V GLT  ++ SHLQK+R+
Sbjct: 237 KPRVVWSVELHQQFVAAVNQLG-VEKAVPKKILELMNVPGLTRENVASHLQKYRI 290

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	371
147797311	356	hypothetical protein VITISV_013342 [Viti	0.938	0.977	0.751	1e-148
224101311	365	predicted protein [Populus trichocarpa]	0.962	0.978	0.749	1e-146
359494672	347	PREDICTED: myb family transcription fact	0.913	0.976	0.750	1e-144
255564111	346	transcription factor, putative [Ricinus	0.913	0.979	0.760	1e-144
356557050	370	PREDICTED: myb family transcription fact	0.929	0.932	0.718	1e-141
56269839	356	myb family transcription factor-related	0.940	0.980	0.738	1e-140
356525732	370	PREDICTED: myb family transcription fact	0.929	0.932	0.710	1e-139
297736106	329	unnamed protein product [Vitis vinifera]	0.867	0.978	0.706	1e-134
311780285	358	IPN2 [Lotus japonicus]	0.905	0.938	0.695	1e-129
356556674	355	PREDICTED: myb family transcription fact	0.902	0.943	0.651	1e-121

>gi|147797311|emb|CAN76008.1| hypothetical protein VITISV_013342 [Vitis vinifera]

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 285/379 (75%), Positives = 317/379 (83%), Gaps = 31/379 (8%)

Query: 1   MFQHHKKPSSMNSHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKA 60
           MF HHKKPS+MNSH DRP+CVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKA
Sbjct: 1   MF-HHKKPSTMNSH-DRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKA 58

Query: 61  TPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKD--GLDLQRNTASSSGVI 118
           TPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKD   L+LQRN ASSSGV+
Sbjct: 59  TPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDASALELQRNIASSSGVM 118

Query: 119 GRSMNDNSHMVDAIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGE 178
            R+ N+         MQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQ+ILEKACQTLA GE
Sbjct: 119 SRNTNE---------MQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQTILEKACQTLA-GE 168

Query: 179 TVTPASFKGTIGNQAVPDVGTMKDFCPPLNFSQFQDLNLYGGDQIDHLQQNMDRQSSLDH 238
            +   ++KG IGNQ VPD+G MKDF   LNF   QDLN+YGGDQ+D LQQ+MDR  SLD 
Sbjct: 169 NMALGNYKG-IGNQGVPDMGAMKDFGSSLNFPSLQDLNIYGGDQLD-LQQSMDR--SLD- 223

Query: 239 GFMQSNDNICLGKKRPSPYNGGSGTGKSPLMWSDDLRLQDLATPP-CIGPQDDPFKGDQI 297
           GF+Q+ +N+CLGKKRPSPY   SG+GK+PL+WSDDLR+Q+L T   C+G QDDPFKGDQI
Sbjct: 224 GFIQNTENMCLGKKRPSPY---SGSGKNPLIWSDDLRMQELGTAASCLGSQDDPFKGDQI 280

Query: 298 QIAPPS----NDLDSISDIYETKPVLSGDAVSSEKKFEAS-SAKLERPSPRRTPISTERM 352
           QIAPPS     D+DSISDIYETKP+LSGD +  EKKF+ S SAKL RPSPRR P+ T+RM
Sbjct: 281 QIAPPSMDRGADMDSISDIYETKPILSGDPM-GEKKFDGSGSAKLGRPSPRRAPLPTDRM 339

Query: 353 NPAMMNTGGMQQGRNSPYG 371
           NP M+N G M QGR+S YG
Sbjct: 340 NP-MINAGAMPQGRSS-YG 356

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101311|ref|XP_002312227.1| predicted protein [Populus trichocarpa] gi|222852047|gb|EEE89594.1| predicted protein [Populus trichocarpa]

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 284/379 (74%), Positives = 314/379 (82%), Gaps = 22/379 (5%)

Query: 1   MFQHHKKPSSMNSHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKA 60
           MF H KKPS+MNSH DRP+CVQ DSGLVLTTDPKPRLRWTVELHERFVDAV QLGGPDKA
Sbjct: 1   MF-HTKKPSTMNSH-DRPMCVQ-DSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKA 57

Query: 61  TPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKD--GLDLQRNTASSSGVI 118
           TPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQ HKEFNDHSIKD   LDLQR+ ASSSG+I
Sbjct: 58  TPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQLHKEFNDHSIKDASALDLQRSAASSSGMI 117

Query: 119 GRSMNDNSHMVDAIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGE 178
            RSMNDNSHM+ AIRMQMEVQRRLHEQLEVQRHLQLR EAQGKY+QS+LEKACQTLA  +
Sbjct: 118 SRSMNDNSHMIYAIRMQMEVQRRLHEQLEVQRHLQLRTEAQGKYIQSLLEKACQTLAGDQ 177

Query: 179 TVTPASFKGTIGNQAVPDVGTMKDFCPPLNFSQFQDLNLYGGDQIDHLQQNMDRQSSLDH 238
            +   S+KG IGNQ VPD+G MKDF  PLNF  FQDLN+YG  Q+D L  NMDR  SLD 
Sbjct: 178 DLASGSYKG-IGNQGVPDMGAMKDFG-PLNFPPFQDLNIYGSGQLD-LLHNMDR-PSLD- 232

Query: 239 GFMQSN-DNICLGKKRPSPYNGGSGTGKSPLMWSDDLRLQDLATP-PCIGPQDDPFKGDQ 296
           GFM +N D+ICLGKKR +PY   +G+GKSPL+WSDDLRLQDL +   C+GPQDDP KGDQ
Sbjct: 233 GFMSNNHDDICLGKKRTNPY---AGSGKSPLIWSDDLRLQDLGSGLSCLGPQDDPLKGDQ 289

Query: 297 IQIAPP----SNDLDSISDIYETKPVLSGDAVSSEKKFEASSAKLERPSPRRTPISTERM 352
           IQIAPP      DLDS+S +Y TKPV  GDA+  EKK EA SAK ERPSPRR P++ +RM
Sbjct: 290 IQIAPPLMDSGTDLDSLSGLYGTKPVHQGDAL-DEKKLEA-SAKTERPSPRRAPLAADRM 347

Query: 353 NPAMMNTGGMQQGRNSPYG 371
           +P M+NTG M QGRNSP+G
Sbjct: 348 SP-MINTGVMPQGRNSPFG 365

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494672|ref|XP_002265800.2| PREDICTED: myb family transcription factor APL [Vitis vinifera]

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 277/369 (75%), Positives = 308/369 (83%), Gaps = 30/369 (8%)

Query: 11  MNSHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMG 70
           MNSH DRP+CVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMG
Sbjct: 1   MNSH-DRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMG 59

Query: 71  VKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKD--GLDLQRNTASSSGVIGRSMNDNSHM 128
           VKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKD   L+LQRN ASSSGV+ R+ N+    
Sbjct: 60  VKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDASALELQRNIASSSGVMSRNTNE---- 115

Query: 129 VDAIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETVTPASFKGT 188
                MQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQ+ILEKACQTLA GE +   ++KG 
Sbjct: 116 -----MQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQTILEKACQTLA-GENMALGNYKG- 168

Query: 189 IGNQAVPDVGTMKDFCPPLNFSQFQDLNLYGGDQIDHLQQNMDRQSSLDHGFMQSNDNIC 248
           IGNQ VPD+G MKDF   LNF   QDLN+YGGDQ+D LQQ+MDR  SLD GF+Q+ +N+C
Sbjct: 169 IGNQGVPDMGAMKDFGSSLNFPSLQDLNIYGGDQLD-LQQSMDR--SLD-GFIQNTENMC 224

Query: 249 LGKKRPSPYNGGSGTGKSPLMWSDDLRLQDLATPP-CIGPQDDPFKGDQIQIAPPS---- 303
           LGKKRPSPY   SG+GK+PL+WSDDLR+Q+L T   C+G QDDPFKGDQIQIAPPS    
Sbjct: 225 LGKKRPSPY---SGSGKNPLIWSDDLRMQELGTAASCLGSQDDPFKGDQIQIAPPSMDRG 281

Query: 304 NDLDSISDIYETKPVLSGDAVSSEKKFEAS-SAKLERPSPRRTPISTERMNPAMMNTGGM 362
            D+DSISDIYETKP+LSGD +  EKKF+ S SAKL RPSPRR P+ T+RMNP M+N G M
Sbjct: 282 ADMDSISDIYETKPILSGDPM-GEKKFDGSGSAKLGRPSPRRAPLPTDRMNP-MINAGAM 339

Query: 363 QQGRNSPYG 371
            QGR+S YG
Sbjct: 340 PQGRSS-YG 347

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564111|ref|XP_002523053.1| transcription factor, putative [Ricinus communis] gi|223537710|gb|EEF39332.1| transcription factor, putative [Ricinus communis]

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 280/368 (76%), Positives = 310/368 (84%), Gaps = 29/368 (7%)

Query: 11  MNSHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMG 70
           MNSH DRP+CVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMG
Sbjct: 1   MNSH-DRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMG 59

Query: 71  VKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDG--LDLQRNTASSSGVIGRSMNDNSHM 128
           VKGLTLYHLKSHLQKFRLGKQPHKEF+D SIKDG  LDLQR+ AS+S ++GRSMN+    
Sbjct: 60  VKGLTLYHLKSHLQKFRLGKQPHKEFSDPSIKDGPALDLQRSAASTSAMMGRSMNE---- 115

Query: 129 VDAIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETVTPASFKGT 188
                MQMEVQRRLHEQLEVQRHLQLRIEA GKYMQ++LEKA QTLA GE +   S+KG 
Sbjct: 116 -----MQMEVQRRLHEQLEVQRHLQLRIEAHGKYMQNMLEKAYQTLA-GENMASGSYKG- 168

Query: 189 IGNQAVPDVGTMKDFCPPLNFSQFQDLNLYGGDQIDHLQQNMDRQSSLDHGFMQSNDNIC 248
           IGNQ VPD+G MKDF  PLNF QFQDLN+YGGDQ+D LQQNMDR  SLD GFM +ND+IC
Sbjct: 169 IGNQGVPDLGAMKDFG-PLNFPQFQDLNIYGGDQLD-LQQNMDR-PSLD-GFMPNNDHIC 224

Query: 249 LGKKRPSPYNGGSGTGKSPLMWSDDLRLQDLATPP-CIGPQDDPFKGDQIQIAPPS---- 303
           LGKKR SPY   SG+GKSPL+WSDDLRLQDL + P C+GP DD FK DQIQIAPPS    
Sbjct: 225 LGKKRSSPY---SGSGKSPLIWSDDLRLQDLGSAPTCLGPPDDLFKSDQIQIAPPSMDRG 281

Query: 304 NDLDSISDIYETKPVLSGDAVSSEKKFEASSAKLERPSPRRTPISTERMNPAMMNTGGMQ 363
            DLDSISDIYETKP+L GDA+  EKKF+AS+ KLERPSPRR P+ T+RM+P M+N+G M 
Sbjct: 282 TDLDSISDIYETKPMLQGDAM-GEKKFDAST-KLERPSPRRAPLPTDRMSP-MINSGAMP 338

Query: 364 QGRNSPYG 371
           Q RNSP+G
Sbjct: 339 QDRNSPFG 346

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557050|ref|XP_003546831.1| PREDICTED: myb family transcription factor APL-like [Glycine max]

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 276/384 (71%), Positives = 310/384 (80%), Gaps = 39/384 (10%)

Query: 6   KKPSSMNSHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTI 65
           KKPS+MNSH DRP+CVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTI
Sbjct: 8   KKPSTMNSH-DRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTI 66

Query: 66  MRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKD--GLDLQRNTASSSGVIGRSMN 123
           MRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKD   L+LQRNTASSS +IGR+MN
Sbjct: 67  MRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDASALELQRNTASSSAMIGRNMN 126

Query: 124 DNSHMVDAIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETVTPA 183
           +         MQ+EVQRRLHEQLEVQ+HLQLRIEAQGKYMQSILEKA QTLA GE +  A
Sbjct: 127 E---------MQIEVQRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYQTLA-GENMASA 176

Query: 184 S--FKGTI--GNQAVPDVG-TMKDFCPPLNFSQFQDL-NLYGGDQIDHLQQNMDRQSSLD 237
           +   KG I   +Q +PD+G  MK+F  PL FS FQDL N+YGGDQID LQQNM++   LD
Sbjct: 177 ATNLKGAIVPHHQGIPDMGVVMKEFGSPLGFSSFQDLENIYGGDQID-LQQNMEK-PPLD 234

Query: 238 HGFMQSNDNICLGKKRP-SPYNGGSGTGKSPLMWSDDLRLQDLATPP--CIGPQDDPFKG 294
           HGFM  N+ +CLGKKR  +PY   SG+GKSPL+WSDDLRLQDL  P   C+GPQDDPFKG
Sbjct: 235 HGFMPINETLCLGKKRSNNPY---SGSGKSPLIWSDDLRLQDLGGPASSCLGPQDDPFKG 291

Query: 295 DQIQIAPP-------SNDLDSISDIYETKPVLSGDAVSSEKKFEASSAKLERPSPRRTPI 347
           DQIQIAPP       S D+D +S+IY++KPVL     S EKKF+ASS KLERPSPRR P+
Sbjct: 292 DQIQIAPPGSLDRGASTDIDPMSEIYDSKPVLQ----SEEKKFDASSMKLERPSPRRAPL 347

Query: 348 STERMNPAMMNTGGMQQGRNSPYG 371
             ERM+P M++TG M QGR SP+G
Sbjct: 348 QAERMSP-MISTGTMAQGRGSPFG 370

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|56269839|gb|AAV85474.1| myb family transcription factor-related protein [Populus tomentosa]

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 279/378 (73%), Positives = 314/378 (83%), Gaps = 29/378 (7%)

Query: 1   MFQHHKKPSSMNSHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKA 60
           MF H KKPS+MNSH DRP+CVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKA
Sbjct: 1   MF-HTKKPSTMNSH-DRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKA 58

Query: 61  TPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKD--GLDLQRNTASSSGVI 118
           TPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQP K+F+DHSIKD   LDLQR+ ASSSG++
Sbjct: 59  TPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPLKDFSDHSIKDASALDLQRSAASSSGMM 118

Query: 119 GRSMNDNSHMVDAIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGE 178
            RSMN+         MQMEVQRRLHEQLEVQRHLQLR EAQGKY+QS+LEKACQTLA  +
Sbjct: 119 SRSMNE---------MQMEVQRRLHEQLEVQRHLQLRTEAQGKYIQSLLEKACQTLAGDQ 169

Query: 179 TVTPASFKGTIGNQAVPDVGTMKDFCPPLNFSQFQDLNLYGGDQIDHLQQNMDRQSSLDH 238
            +   S+KG +GNQ +P +G MK+F   LNF  FQDLN+YGGDQ+D LQ NMDR  SLD 
Sbjct: 170 NLASGSYKG-LGNQGIPGMGAMKEFG-SLNFPAFQDLNIYGGDQLD-LQHNMDR-PSLD- 224

Query: 239 GFMQSNDNICLGKKRPSPYNGGSGTGKSPLMWSDDLRLQDLAT-PPCIGPQDDPFKGDQI 297
           GFM +NDNICLGKKRPSPY+   G+GKSPL+W DDLRLQDL + P C+ PQDDPFKGDQI
Sbjct: 225 GFMANNDNICLGKKRPSPYD---GSGKSPLIWPDDLRLQDLGSGPACLEPQDDPFKGDQI 281

Query: 298 QIAPPS----NDLDSISDIYETKPVLSGDAVSSEKKFEASSAKLERPSPRRTPISTERMN 353
           Q+APPS     DLDSISD+YE KP L GD +  EKKFEA SAKL+RPSPRR+P++ ERM+
Sbjct: 282 QMAPPSMDRGTDLDSISDMYEMKPALQGDGL-DEKKFEA-SAKLKRPSPRRSPLAAERMS 339

Query: 354 PAMMNTGGMQQGRNSPYG 371
           P M+NTG M QGRNSP+G
Sbjct: 340 P-MINTGAMPQGRNSPFG 356

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525732|ref|XP_003531477.1| PREDICTED: myb family transcription factor APL-like [Glycine max]

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 273/384 (71%), Positives = 311/384 (80%), Gaps = 39/384 (10%)

Query: 6   KKPSSMNSHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTI 65
           KKPS+MNSH DRP+CVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTI
Sbjct: 8   KKPSTMNSH-DRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTI 66

Query: 66  MRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKD--GLDLQRNTASSSGVIGRSMN 123
           MRVMGVKGLTLYHLKSHLQKFRLGKQPHK+FNDHSIKD   L+LQRNTASSS +IGR+MN
Sbjct: 67  MRVMGVKGLTLYHLKSHLQKFRLGKQPHKDFNDHSIKDASALELQRNTASSSAMIGRNMN 126

Query: 124 DNSHMVDAIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETVTPA 183
           +         MQ+EVQRRLHEQLEVQ+HLQLRIEAQGKYMQSILEKA QTLA GE +  A
Sbjct: 127 E---------MQIEVQRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYQTLA-GENMASA 176

Query: 184 S--FKGTI--GNQAVPDVG-TMKDFCPPLNFSQFQDL-NLYGGDQIDHLQQNMDRQSSLD 237
           +   K  I   +Q +PD+G  MK+F  PL FS FQDL N+YGG+QID LQQNM++  SLD
Sbjct: 177 ATNLKSAIVPHHQGIPDMGVVMKEFGSPLGFSSFQDLENIYGGNQID-LQQNMEK-PSLD 234

Query: 238 HGFMQSNDNICLGKKRP-SPYNGGSGTGKSPLMWSDDLRLQDLATPP--CIGPQDDPFKG 294
           HGFM  N+++CLGKKR  +PY   SG+GK+PL+WSDDLRLQDL  P   C+GPQDDPFKG
Sbjct: 235 HGFMPINESLCLGKKRSNNPY---SGSGKNPLIWSDDLRLQDLGGPASSCLGPQDDPFKG 291

Query: 295 DQIQIAPP-------SNDLDSISDIYETKPVLSGDAVSSEKKFEASSAKLERPSPRRTPI 347
           DQIQIAPP       S D+D +S+IY++KPVL     S EKKF+ASS KLERPSPRR P+
Sbjct: 292 DQIQIAPPGSLDRGASTDIDPMSEIYDSKPVLQ----SEEKKFDASSMKLERPSPRRAPL 347

Query: 348 STERMNPAMMNTGGMQQGRNSPYG 371
             ERM+P M++TG M QGR SP+G
Sbjct: 348 QPERMSP-MISTGTMAQGRGSPFG 370

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736106|emb|CBI24144.3| unnamed protein product [Vitis vinifera]

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 267/378 (70%), Positives = 295/378 (78%), Gaps = 56/378 (14%)

Query: 1   MFQHHKKPSSMNSHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKA 60
           MF HHKKPS+MNSH DRP+CVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKA
Sbjct: 1   MF-HHKKPSTMNSH-DRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKA 58

Query: 61  TPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKD--GLDLQRNTASSSGVI 118
           TPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKD   L+LQRN ASSSGV+
Sbjct: 59  TPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDASALELQRNIASSSGVM 118

Query: 119 GRSMNDNSHMVDAIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGE 178
            R+ N+         MQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQ+ILEKACQTLA GE
Sbjct: 119 SRNTNE---------MQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQTILEKACQTLA-GE 168

Query: 179 TVTPASFKGTIGNQAVPDVGTMKDFCPPLNFSQFQDLNLYGGDQIDHLQQNMDRQSSLDH 238
            +   ++KG IGNQ VPD+G MKDF   LNF   QDLN+YGGDQ+D LQQ+MDR  SLD 
Sbjct: 169 NMALGNYKG-IGNQGVPDMGAMKDFGSSLNFPSLQDLNIYGGDQLD-LQQSMDR--SLD- 223

Query: 239 GFMQSNDNICLGKKRPSPYNGGSGTGKSPLMWSDDLRLQDLATPPCIGPQDDPFKGDQIQ 298
           GF+Q+ +N+CLGKKRPSPY+G                             +DPFKGDQIQ
Sbjct: 224 GFIQNTENMCLGKKRPSPYSG-----------------------------NDPFKGDQIQ 254

Query: 299 IAPPS----NDLDSISDIYETKPVLSGDAVSSEKKFEAS-SAKLERPSPRRTPISTERMN 353
           IAPPS     D+DSISDIYETKP+LSGD +  EKKF+ S SAKL RPSPRR P+ T+RMN
Sbjct: 255 IAPPSMDRGADMDSISDIYETKPILSGDPM-GEKKFDGSGSAKLGRPSPRRAPLPTDRMN 313

Query: 354 PAMMNTGGMQQGRNSPYG 371
           P M+N G M QGR+S YG
Sbjct: 314 P-MINAGAMPQGRSS-YG 329

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|311780285|gb|ADQ08683.1| IPN2 [Lotus japonicus]

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 265/381 (69%), Positives = 299/381 (78%), Gaps = 45/381 (11%)

Query: 6   KKPSSMNSHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTI 65
           KKPS+MNSH DRP+CVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTI
Sbjct: 8   KKPSTMNSH-DRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTI 66

Query: 66  MRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDG-----LDLQRNTASSSGVIGR 120
           MRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDG     L+LQRNTASSS +IGR
Sbjct: 67  MRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASALELQRNTASSSAMIGR 126

Query: 121 SMNDNSHMVDAIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETV 180
           +MN+         MQ+EVQRRLHEQLEVQ+HLQLRIEAQGKYMQSILEKA QTLA     
Sbjct: 127 NMNE---------MQIEVQRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYQTLAGENMA 177

Query: 181 TPASFKGTIGNQAVPDVGTMKDFCPPLNFSQFQDLNLYGGDQIDH--LQQNMDRQSSLDH 238
           + A+    IG Q +PD+G MK+F  PL FS FQDL+LYGG   D   LQQNM++   LD 
Sbjct: 178 SAATNLKGIGPQTIPDMGIMKEFGSPLGFS-FQDLDLYGGGGGDQLELQQNMEK-PPLD- 234

Query: 239 GFMQSN-DNICLGKKRPSPYNGGSGTGKSPLMWSDDLRLQDLATPPCIGPQDDPFKGD-- 295
           GFM  N +N+CLGKKRP+PY+G +  GKSPLMWSDDLRLQDL +  C+  QDDPFKGD  
Sbjct: 235 GFMPMNHENLCLGKKRPNPYSGNN--GKSPLMWSDDLRLQDLGS--CL--QDDPFKGDHH 288

Query: 296 -QIQIAPPSND----LDSISDIYETKPVLSGDAVSSEKKFEASSAKLERPSPRRTPISTE 350
            QIQIAPPS D    +D +S+IY++KP         EKKF+A S KLERPSPRR P+  E
Sbjct: 289 HQIQIAPPSLDRGTEMDPMSEIYDSKP--------EEKKFDA-SMKLERPSPRRAPLG-E 338

Query: 351 RMNPAMMNTGGMQQGRNSPYG 371
           RM+P M+ TG M QGR+SP+G
Sbjct: 339 RMSP-MITTGTMAQGRSSPFG 358

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556674|ref|XP_003546648.1| PREDICTED: myb family transcription factor APL-like [Glycine max]

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 247/379 (65%), Positives = 290/379 (76%), Gaps = 44/379 (11%)

Query: 6   KKPSSMNSHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTI 65
           KKPS+MNSH DR +CVQGDSGLVLTTDPKPRLRWTVELHERFVDAV QLGGPDKATPKTI
Sbjct: 8   KKPSTMNSH-DRSMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTI 66

Query: 66  MRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDG-----LDLQRNTASSSGVIGR 120
           MRVMGVKGLTLYHLKSHLQKFRLGKQPHK+FNDHSIKDG     L+LQRN  SSS +IGR
Sbjct: 67  MRVMGVKGLTLYHLKSHLQKFRLGKQPHKDFNDHSIKDGMRASALELQRNIGSSSAMIGR 126

Query: 121 SMNDNSHMVDAIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETV 180
           +MN+         MQMEVQRRLHEQLEVQ++LQLRIEAQGKYMQSILEKA  TLA GE +
Sbjct: 127 NMNE---------MQMEVQRRLHEQLEVQKNLQLRIEAQGKYMQSILEKAYHTLA-GENM 176

Query: 181 TPASFKGTIGNQAVPDVGTMKDFCPPLNFSQFQDLNLYG-GDQIDHLQQNMDRQSSLDHG 239
              + KG        ++G MK+F   LN+  FQDLN+Y  GDQ             LD G
Sbjct: 177 A-TNMKGMGAPLGTTEMGVMKEFG-SLNYPSFQDLNIYASGDQ------------QLD-G 221

Query: 240 FMQSNDN---ICLGKKRPS-PYNGGSGTGKSPLMWSDDLRLQDLATP-PCIGPQDDPFKG 294
           FM SN+N   + +GKKRP+ PY   SG+GKSPL+WSDDLRLQDL T   CI PQDDPFKG
Sbjct: 222 FMPSNNNNETLFVGKKRPNCPY---SGSGKSPLIWSDDLRLQDLGTASSCISPQDDPFKG 278

Query: 295 D-QIQIAPPSNDLDSISDIYETKP-VLSGDAVSSEKKFEASSAKLERPSPRRTPISTERM 352
           D ++QI+PPS D D IS+IY+TKP +L G++VS + KF+A S K+ERPSP+R+P+  +R 
Sbjct: 279 DHKVQISPPSMDSDPISEIYDTKPMILHGESVSDQNKFDA-SMKVERPSPKRSPLQPDRT 337

Query: 353 NPAMMNTGGMQQGRNSPYG 371
           +P M+N+  + QGR+SP+G
Sbjct: 338 SP-MINSSSVAQGRSSPFG 355

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	371
TAIR|locus:2206415	358	APL "ALTERED PHLOEM DEVELOPMEN	0.908	0.941	0.589	6.6e-97
TAIR|locus:2093726	298	AT3G24120 [Arabidopsis thalian	0.404	0.503	0.677	3.6e-50
TAIR|locus:2119425	295	UNE16 "unfertilized embryo sac	0.407	0.511	0.679	3.6e-50
TAIR|locus:2087740	235	AT3G12730 [Arabidopsis thalian	0.377	0.595	0.672	1.4e-48
TAIR|locus:2095933	394	MYR2 [Arabidopsis thaliana (ta	0.409	0.385	0.618	1.8e-46
TAIR|locus:2172394	402	MYR1 "myb-related protein 1" [	0.557	0.514	0.513	1e-45
TAIR|locus:2026739	337	AT1G69580 [Arabidopsis thalian	0.401	0.442	0.543	4.8e-39
TAIR|locus:2157146	264	AT5G45580 [Arabidopsis thalian	0.404	0.568	0.503	2.1e-36
TAIR|locus:2045761	286	AT2G01060 [Arabidopsis thalian	0.382	0.496	0.548	2.7e-36
TAIR|locus:2148720	413	PHL1 "AT5G29000" [Arabidopsis	0.487	0.438	0.420	4.2e-31

TAIR|locus:2206415 APL "ALTERED PHLOEM DEVELOPMENT" [Arabidopsis thaliana (taxid:3702)]

 Score = 963 (344.1 bits), Expect = 6.6e-97, P = 6.6e-97
 Identities = 231/392 (58%), Positives = 269/392 (68%)

Query:     1 MFQHHKKPSSMN-SHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDK 59
             MF H KKPSSMN S+ +R +CVQGDSGLVLTTDPKPRLRWTVELHERFVDAV QLGGPDK
Sbjct:     1 MF-HAKKPSSMNGSYENRAMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDK 59

Query:    60 ATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDG-----LDLQRNTASS 114
             ATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKE+ DHS K+G     +D+QRN ASS
Sbjct:    60 ATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEYGDHSTKEGSRASAMDIQRNVASS 119

Query:   115 SGVIGRSMNDNSHMVDAIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTL 174
             SG++ R+MN+         MQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILE+ACQTL
Sbjct:   120 SGMMSRNMNE---------MQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILERACQTL 170

Query:   175 ASGETVTPAS--------FKGTIGNQAVPD-VGTMKDFCPPLNFSQFQDLNLYGG--DQI 223
             A GE +  A+        +KG +G+ ++   VG       PL+F  FQDLN+YG   DQ+
Sbjct:   171 A-GENMAAATAAAAVGGGYKGNLGSSSLSAAVGPPPH---PLSFPPFQDLNIYGNTTDQV 226

Query:   224 -DHLQQNMDRQSSLDH--GFMQSNDNICLGKKRPSPYNGGSGTGKSPLMWSDDLRLQDLA 280
              DH   N   Q+  +H  G   ++ NI LGKKRP+P N G+   K  LMWSD  +  DL+
Sbjct:   227 LDH--HNFHHQNIENHFTGNNAADTNIYLGKKRPNP-NFGNDVRKGLLMWSD--QDHDLS 281

Query:   281 TPPCIGPQDDPFKGDQIQIAPP-SNDLDSISDIYETKPVLSGDXXXXXXXXXXXXXXXXR 339
                 I   DD  +  QIQ+A   S DLDS+S+IYE K  LSGD                R
Sbjct:   282 ANQSI---DDEHR-IQIQMATHVSTDLDSLSEIYERKSGLSGDEGNNGGKLLE------R 331

Query:   340 PSPRRTPISTERMNPAMMNTGGMQQGRNSPYG 371
             PSPRR+P+S   MNP     GG+ QGRNSP+G
Sbjct:   332 PSPRRSPLSP-MMNP----NGGLIQGRNSPFG 358

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010088 "phloem development" evidence=IMP

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2093726 AT3G24120 [Arabidopsis thaliana (taxid:3702)]

 Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
 Identities = 107/158 (67%), Positives = 124/158 (78%)

Query:    23 GDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSH 82
             GD+ LVLTTDPKPRLRWT ELHERFVDAVTQLGGPDKATPKTIMR MGVKGLTLYHLKSH
Sbjct:    30 GDACLVLTTDPKPRLRWTTELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSH 89

Query:    83 LQKFRLGKQPHKEFNDHS-----IKDGLDLQRNTASSSGVIGRSMNDNSHMVDAIRMQME 137
             LQKFRLG+Q  KE  ++S     + +  D   ++ SS  +  +  N+   + +A+R QME
Sbjct:    90 LQKFRLGRQAGKESTENSKDASCVGESQDTGSSSTSSMRMAQQEQNEGYQVTEALRAQME 149

Query:   138 VQRRLHEQLE---VQRHLQLRIEAQGKYMQSILEKACQ 172
             VQRRLH+QLE   VQR LQLRIEAQGKY+QSILEKAC+
Sbjct:   150 VQRRLHDQLEYGQVQRRLQLRIEAQGKYLQSILEKACK 187

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2119425 UNE16 "unfertilized embryo sac 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
 Identities = 108/159 (67%), Positives = 125/159 (78%)

Query:    24 DSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHL 83
             D+ LVLTTDPKPRLRWT ELHERFVDAVTQLGGPDKATPKTIMR MGVKGLTLYHLKSHL
Sbjct:    27 DACLVLTTDPKPRLRWTSELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHL 86

Query:    84 QKFRLGKQPHKEFNDHS-----IKDGLDLQRNTASSSGVIGRSMNDNSHMVDAIRMQMEV 138
             QKFRLG+Q  KE  D+S     + +  D   ++ SS  +  +  N++  + +A+R QMEV
Sbjct:    87 QKFRLGRQSCKESIDNSKDVSCVAESQDTGSSSTSSLRLAAQEQNESYQVTEALRAQMEV 146

Query:   139 QRRLHEQLE---VQRHLQLRIEAQGKYMQSILEKACQTL 174
             QRRLHEQLE   VQR LQLRIEAQGKY+QSILEKAC+ +
Sbjct:   147 QRRLHEQLEYTQVQRRLQLRIEAQGKYLQSILEKACKAI 185

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IMP

TAIR|locus:2087740 AT3G12730 [Arabidopsis thaliana (taxid:3702)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 107/159 (67%), Positives = 126/159 (79%)

Query:    25 SGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQ 84
             SGLVLTTDPKPRLRWT ELHERFVDAVT LGGP+KATPKTIMRVMGVKGLTLYHLKSHLQ
Sbjct:    14 SGLVLTTDPKPRLRWTTELHERFVDAVTHLGGPEKATPKTIMRVMGVKGLTLYHLKSHLQ 73

Query:    85 KFRLGKQPHKEFN-DHSI--KDG-----LDLQRNTASSSG--VIGRSMNDNSHMVDAIRM 134
             KFRLGKQPHKE + +HSI  +D      LDL+RN   ++   +IGR+MN+         M
Sbjct:    74 KFRLGKQPHKEHSQNHSICIRDTNRASMLDLRRNAVFTTSPLIIGRNMNE---------M 124

Query:   135 QMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQT 173
             QMEVQRR+ E++ ++R +  RI AQGKYM+S+LEKAC+T
Sbjct:   125 QMEVQRRIEEEVVIERQVNQRIAAQGKYMESMLEKACET 163

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2095933 MYR2 [Arabidopsis thaliana (taxid:3702)]

 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 99/160 (61%), Positives = 124/160 (77%)

Query:    23 GDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSH 82
             GDSGL+L+TD KPRL+WT +LHERF++AV QLGG DKATPKTIM+VMG+ GLTLYHLKSH
Sbjct:    34 GDSGLILSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTIMKVMGIPGLTLYHLKSH 93

Query:    83 LQKFRLGKQPHKEFNDHSIKDGLD--LQRNTASSSGV------IGRSMNDNSHMVDAIRM 134
             LQK+RL K  + + N+   K G+   ++  T  +  +      IG   N NS + +A++M
Sbjct:    94 LQKYRLSKNLNGQANNSFNKIGIMTMMEEKTPDADEIQSENLSIGPQPNKNSPIGEALQM 153

Query:   135 QMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTL 174
             Q+EVQRRLHEQLEVQRHLQLRIEAQGKY+QS+LEKA +TL
Sbjct:   154 QIEVQRRLHEQLEVQRHLQLRIEAQGKYLQSVLEKAQETL 193

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2172394 MYR1 "myb-related protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 116/226 (51%), Positives = 149/226 (65%)

Query:    23 GDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSH 82
             GDSGL+L+TD KPRL+WT +LHERFV+AV QLGG DKATPKTIM+VMG+ GLTLYHLKSH
Sbjct:    34 GDSGLILSTDAKPRLKWTPDLHERFVEAVNQLGGGDKATPKTIMKVMGIPGLTLYHLKSH 93

Query:    83 LQKFRLGK----QPHKEFNDHSIKDGLDLQR----NTASSSGVIGRSMNDNSHMVDAIRM 134
             LQK+RL K    Q +   N  S+   ++        + S S  IG   + N  + DA++M
Sbjct:    94 LQKYRLSKNLNGQANSSLNKTSVMTMVEENPPEVDESHSESLSIGPQPSMNLPISDALQM 153

Query:   135 QMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETVTPASFKGTIG--NQ 192
             Q+EVQRRLHEQLEVQRHLQLRIEAQGKY+QSILEKA +TL   + +  A  + T    ++
Sbjct:   154 QIEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQETLGR-QNLGAAGIEATKAQLSE 212

Query:   193 AVPDVGTMKDFCPPLNFSQFQDL-NLYGGDQIDHLQQNMDRQSSLD 237
              V  V    D+ P  +F + ++L NL+       +Q+     SSLD
Sbjct:   213 LVSKVSA--DY-PDSSFLEPKELQNLHH----QQMQKTYPPNSSLD 251

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2026739 AT1G69580 [Arabidopsis thaliana (taxid:3702)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 87/160 (54%), Positives = 117/160 (73%)

Query:    27 LVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKF 86
             LVL+TD KPRL+WT +LH +F++AV QLGGP+KATPK +M+VM + GLTLYHLKSHLQK+
Sbjct:    27 LVLSTDAKPRLKWTCDLHHKFIEAVNQLGGPNKATPKGLMKVMEIPGLTLYHLKSHLQKY 86

Query:    87 RLGKQPHKEFNDHSIKDGLDLQR--NTASSSGVIGRSMND-NSH--------MVDAIRMQ 135
             RLGK    + N   +    + Q   +   S  + G S+ + NS+        + +A++MQ
Sbjct:    87 RLGKSMKFDDNKLEVSSASENQEVESKNDSRDLRGCSVTEENSNPAKDRGLQITEALQMQ 146

Query:   136 MEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLA 175
             MEVQ++LHEQ+EVQRHLQ++IEAQGKY+QS+L KA QTLA
Sbjct:   147 MEVQKKLHEQIEVQRHLQVKIEAQGKYLQSVLMKAQQTLA 186

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA

TAIR|locus:2157146 AT5G45580 [Arabidopsis thaliana (taxid:3702)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 81/161 (50%), Positives = 112/161 (69%)

Query:    28 VLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFR 87
             ++T DPKPRLRWT +LH+RFVDAV +LGG DKATPK+++++MG+KGLTLYHLKSHLQK+R
Sbjct:     1 MMTRDPKPRLRWTADLHDRFVDAVAKLGGADKATPKSVLKLMGLKGLTLYHLKSHLQKYR 60

Query:    88 LGKQPHKEFN-DHSIKDGLD---LQRNTASSSGVIGRSMNDNSH-------MVDAIRMQM 136
             LG+Q  K+ N     K+      +  +  S  G+   S  DN           +A+R Q+
Sbjct:    61 LGQQQGKKQNRTEQNKENAGSSYVHFDNCSQGGISNDSRFDNHQRQSGNVPFAEAMRHQV 120

Query:   137 EVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASG 177
             + Q+R  EQLEVQ+ LQ+R+EAQGKY+ ++LEKA ++L  G
Sbjct:   121 DAQQRFQEQLEVQKKLQMRMEAQGKYLLTLLEKAQKSLPCG 161

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2045761 AT2G01060 [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 85/155 (54%), Positives = 109/155 (70%)

Query:    34 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPH 93
             K RLRWT ELHERFVDAV QLGGPD+ATPK ++RVMGV+GLT+YH+KSHLQK+RL K   
Sbjct:    15 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAK--- 71

Query:    94 KEFNDHSIKDGLDLQRNTASS--SGVIGRSMNDNSHMVDAIRMQMEVQRRLHEQLEVQRH 151
               +   S  +G    +  +    SG+ G S      + +A+++QMEVQ+RLHEQLEVQR 
Sbjct:    72 --YLPDSSSEGKKTDKKESGDMLSGLDGSS---GMQITEALKLQMEVQKRLHEQLEVQRQ 126

Query:   152 LQLRIEAQGKYMQSILEKACQTLAS--GETVTPAS 184
             LQLRIEAQGKY++ I+E+  Q L+   GE   P +
Sbjct:   127 LQLRIEAQGKYLKKIIEEQ-QRLSGVLGEPSAPVT 160

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

TAIR|locus:2148720 PHL1 "AT5G29000" [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 79/188 (42%), Positives = 116/188 (61%)

Query:    11 MNSHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMG 70
             M S  D+ L  +  S  V T+  K R+RWT ELHE FV+AV QLGG ++ATPK +++++ 
Sbjct:   211 MVSSEDQ-LSGRNSSSSVATS--KQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLN 267

Query:    71 VKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGLDLQRNTASSSGVIGRSMNDNSHMVD 130
               GLT+YH+KSHLQK+R  +  +K   + S   G   ++   S   +    M  +  +  
Sbjct:   268 NPGLTIYHVKSHLQKYRTAR--YKP--ETSEVTGEPQEKKMTSIEDIKSLDMKTSVEITQ 323

Query:   131 AIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETVTPASFKGTIG 190
             A+R+QMEVQ+RLHEQLE+QR LQL+IE QG+Y+Q + EK  +   +  + + AS K   G
Sbjct:   324 ALRLQMEVQKRLHEQLEIQRSLQLQIEKQGRYLQMMFEKQQKIQDNKSSSSEASPKQCNG 383

Query:   191 NQAVPDVG 198
             + A  +VG
Sbjct:   384 SFAEVEVG 391

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SAK5	APL_ARATH	No assigned EC number	0.5882	0.9110	0.9441	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00002102001 SubName- Full=Chromosome chr19 scaffold_126, whole genome shotgun sequence; (359 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	371
pfam14379	51	pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor,	3e-25
TIGR01557	57	TIGR01557, myb_SHAQKYF, myb-like DNA-binding domai	1e-22
PLN03162	526	PLN03162, PLN03162, golden-2 like transcription fa	3e-09
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	3e-07

>gnl|CDD|206547 pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor, LHEQLE motif

 Score = 96.2 bits (240), Expect = 3e-25
 Identities = 37/51 (72%), Positives = 45/51 (88%)

Query: 125 NSHMVDAIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLA 175
              + +A+R+QMEVQRRLHEQLEVQRHLQ+RIEAQGKY+Q ILEKA +TL+
Sbjct: 1   GMQITEALRLQMEVQRRLHEQLEVQRHLQIRIEAQGKYLQEILEKAQKTLS 51

This family is found towards the C-terminus of Myb-CC type transcription factors, and carries a highly conserved LHEQLE sequence motif. Length = 51

>gnl|CDD|130620 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domain, SHAQKYF class

 Score = 89.4 bits (222), Expect = 1e-22
 Identities = 33/57 (57%), Positives = 43/57 (75%)

Query: 34 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGK 90
          KPR+ WT +LH+RF+ AV +LGGPD ATPK I+ +M V GLT   + SHLQK+RL +
Sbjct: 1  KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ 57

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif. Length = 57

>gnl|CDD|178707 PLN03162, PLN03162, golden-2 like transcription factor; Provisional

 Score = 57.9 bits (139), Expect = 3e-09
 Identities = 29/54 (53%), Positives = 39/54 (72%), Gaps = 1/54 (1%)

Query: 34  KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFR 87
           K ++ WT ELH RFV AV QLG  +KA P  I+ +MGV+ LT +++ SHLQK+R
Sbjct: 235 KAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYR 287

Length = 526

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 46.4 bits (111), Expect = 3e-07
 Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 5/52 (9%)

Query: 36 RLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFR 87
          R  WT E  E  ++AV + G  +      I + +   G T    K+    + 
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGN---WSKIAKHLP--GRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	371
PF14379	51	Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE mot	99.91
PLN03162	526	golden-2 like transcription factor; Provisional	99.88
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	99.84
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	97.21
smart00426	68	TEA TEA domain.	91.05
PF14379	51	Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE mot	88.29

>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif

Probab=99.91  E-value=1.2e-24  Score=163.08  Aligned_cols=50  Identities=78%  Similarity=1.075  Sum_probs=47.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHhc
Q 017478          126 SHMVDAIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLA  175 (371)
Q Consensus       126 ~~i~EALrmQmEVQrrLHEQLEVQRhLQLRIEAQGKYLQsILEKAqetLa  175 (371)
                      ..++||||+||||||||||||||||+||+|||||||||++|||+|+++++
T Consensus         2 ~~i~EALr~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ilek~~~~~s   51 (51)
T PF14379_consen    2 MQITEALRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQKALS   51 (51)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            35789999999999999999999999999999999999999999999874

>PLN03162 golden-2 like transcription factor; Provisional

Probab=99.88  E-value=2.1e-23  Score=206.84  Aligned_cols=61  Identities=48%  Similarity=0.759  Sum_probs=57.7

Q ss_pred             cCCCCCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCccHHHHHHhhhhhhcCCC
Q 017478           30 TTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQ   91 (371)
Q Consensus        30 s~~~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVkSHLQKYRl~~~   91 (371)
                      ...+|+||+||+|||++||+||++|| .++||||+||++|+|+|||++||||||||||+.++
T Consensus       231 ~g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk  291 (526)
T PLN03162        231 PGKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRR  291 (526)
T ss_pred             CCCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcc
Confidence            34679999999999999999999999 79999999999999999999999999999999874

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=99.84  E-value=2.9e-21  Score=146.54  Aligned_cols=56  Identities=59%  Similarity=0.976  Sum_probs=54.2

Q ss_pred             CCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCccHHHHHHhhhhhhcC
Q 017478           34 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLG   89 (371)
Q Consensus        34 KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVkSHLQKYRl~   89 (371)
                      |+|++||+|+|++|++||+.||+.+.||||.|++.|++++||+.||+|||||||+.
T Consensus         1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k   56 (57)
T TIGR01557         1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK   56 (57)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            78999999999999999999998799999999999999999999999999999975

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=97.21  E-value=0.00096  Score=47.84  Aligned_cols=48  Identities=33%  Similarity=0.434  Sum_probs=41.0

Q ss_pred             CcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCccHHHHHHhhhhhh
Q 017478           36 RLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFR   87 (371)
Q Consensus        36 RLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVkSHLQKYR   87 (371)
                      |-.||+|=++.|++||.++|. +  .-+.|-+.|+ .+-|..++++|.++|+
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~-~--~W~~Ia~~~~-~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGK-D--NWKKIAKRMP-GGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTT-T--HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCC-c--HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence            568999999999999999992 1  4789999998 7899999999999985

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>smart00426 TEA TEA domain

Probab=91.05  E-value=0.24  Score=39.99  Aligned_cols=46  Identities=20%  Similarity=0.273  Sum_probs=29.6

Q ss_pred             ccCHHHHHHHHHHHHhhCCCCCCChh-HHHhh---h-----------CCCCc--cHHHHHHhhhh
Q 017478           38 RWTVELHERFVDAVTQLGGPDKATPK-TIMRV---M-----------GVKGL--TLYHLKSHLQK   85 (371)
Q Consensus        38 rWT~ELH~rFV~AV~qLGG~dkAtPK-~IL~l---M-----------~V~gL--T~~hVkSHLQK   85 (371)
                      +|.++|-..|++|+...=  ...+=| .+...   .           ...|.  |+.+|.||+|.
T Consensus         5 vWp~~lE~Af~~aL~~~~--~~g~~kik~~~r~k~~gRNelIs~YI~~~tGk~Rt~KQVsShIQv   67 (68)
T smart00426        5 VWSPDIEQAFQEALAIYP--PCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQV   67 (68)
T ss_pred             cCcHHHHHHHHHHHHHcC--ccCcccchhhhcCcccchhHHHHHHHHHHhCCccchhhhcchhee
Confidence            699999999999998775  222222 12111   1           12444  78889999984

>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif

Probab=88.29  E-value=1.1  Score=34.52  Aligned_cols=34  Identities=35%  Similarity=0.441  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHh
Q 017478          140 RRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTL  174 (371)
Q Consensus       140 rrLHEQLEVQRhLQLRIEAQGKYLQsILEKAqetL  174 (371)
                      --|..|+||||+|.=.+|.| |-||.=+|...+-|
T Consensus         6 EALr~QmEvQrrLhEQLEvQ-r~Lqlrieaqgkyl   39 (51)
T PF14379_consen    6 EALRMQMEVQRRLHEQLEVQ-RHLQLRIEAQGKYL   39 (51)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHH
Confidence            45777888888888888877 55665555554444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	371
1irz_A	64	Solution Structure Of Arr10-B Belonging To The Garp		8e-09

>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family Of Plant Myb-Related Dna Binding Motifs Of The Arabidopsis Response Regulators Length = 64

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 30 TTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLG 89
          T   KPR+ WT ELH +F+ AV  LG  ++A PK I+ +M V  LT  ++ SHLQKFR+ 
Sbjct: 1  TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	371
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	1e-24
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Length = 64

 Score = 94.6 bits (235), Expect = 1e-24
 Identities = 29/62 (46%), Positives = 40/62 (64%), Gaps = 1/62 (1%)

Query: 30 TTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLG 89
          T   KPR+ WT ELH +F+ AV  LG  ++A PK I+ +M V  LT  ++ SHLQKFR+ 
Sbjct: 1  TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59

Query: 90 KQ 91
           +
Sbjct: 60 LK 61

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 6e-05
 Identities = 43/306 (14%), Positives = 85/306 (27%), Gaps = 96/306 (31%)

Query: 78  HLKSHLQKFRLGKQPHK------EFNDHSIKDGLDLQRNTASSSGVIGRSMNDNSHMVDA 131
           H   H   F  G+  ++       F D  + +  D +        ++      +   +D 
Sbjct: 1   HHHHHHMDFETGEHQYQYKDILSVFEDAFVDN-FDCKDVQDMPKSIL------SKEEIDH 53

Query: 132 IRMQ---MEVQRRLHEQLE------VQRHLQLRIEAQGKYMQSILEKACQTLASGETVTP 182
           I M    +    RL   L       VQ+ ++  +    K++ S ++   +   S  T   
Sbjct: 54  IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ-PSMMTRMY 112

Query: 183 ASFKGTIGNQAVPDVGTMKDFCPPLNFSQFQDLNLYGGDQIDHLQQNMDRQSSLDHGFMQ 242
              +  + N                    F   N+        L+Q              
Sbjct: 113 IEQRDRLYNDNQV----------------FAKYNVSRLQPYLKLRQ-------------- 142

Query: 243 SNDNICLGKKRPSPY---NGGSGTGKSPL------------------MW-------SDDL 274
                 L + RP+     +G  G+GK+ +                   W       S + 
Sbjct: 143 -----ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197

Query: 275 RLQDLATPPCIGPQDDPFKGDQIQIAP-PSNDL-DSISDIYETKP------VLSGDAVSS 326
            L+ L         +   + D         + +   +  + ++KP      VL    V +
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL--LNVQN 255

Query: 327 EKKFEA 332
            K + A
Sbjct: 256 AKAWNA 261

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	371
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	99.95
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	86.81
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	84.4
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	84.12
2hzd_A	82	Transcriptional enhancer factor TEF-1; DNA-binding	83.75
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	80.29

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=99.95  E-value=1e-28  Score=190.85  Aligned_cols=60  Identities=48%  Similarity=0.796  Sum_probs=57.5

Q ss_pred             cCCCCCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCccHHHHHHhhhhhhcCC
Q 017478           30 TTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGK   90 (371)
Q Consensus        30 s~~~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVkSHLQKYRl~~   90 (371)
                      ++.+|+|++||+|||++||+||++|| .++||||.||++|+|+|||++||||||||||+.+
T Consensus         1 ~~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l   60 (64)
T 1irz_A            1 TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVAL   60 (64)
T ss_dssp             CCCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence            46799999999999999999999999 7999999999999999999999999999999875

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=86.81  E-value=2.1  Score=33.44  Aligned_cols=46  Identities=13%  Similarity=0.153  Sum_probs=38.4

Q ss_pred             CCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCccHHHHHHhhhhh
Q 017478           35 PRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKF   86 (371)
Q Consensus        35 pRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVkSHLQKY   86 (371)
                      .+-.||+|=+++|++||+..|+    .=+.|-+.|+  +=|..+++.|-++|
T Consensus        17 ~~~~WT~eEd~~Ll~~v~~~G~----~W~~IA~~v~--~RT~~qcr~r~~~~   62 (79)
T 2yus_A           17 AGREWTEQETLLLLEALEMYKD----DWNKVSEHVG--SRTQDECILHFLRL   62 (79)
T ss_dssp             CSCCCCHHHHHHHHHHHHHSSS----CHHHHHHHHS--SCCHHHHHHHHTTS
T ss_pred             cCCCcCHHHHHHHHHHHHHhCC----CHHHHHHHcC--CCCHHHHHHHHHHh
Confidence            4678999999999999999993    2357777764  78999999998877

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=84.40  E-value=2.6  Score=31.61  Aligned_cols=50  Identities=20%  Similarity=0.371  Sum_probs=40.2

Q ss_pred             CCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCccHHHHHHhhhhhhcC
Q 017478           34 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLG   89 (371)
Q Consensus        34 KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVkSHLQKYRl~   89 (371)
                      ..+-.||+|=++.|+++|..+|-    .=+.|-+.  ++|=|-.+|+.|-++|-..
T Consensus         7 ~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~--~~~Rt~~q~k~r~~~~l~~   56 (72)
T 2cu7_A            7 GYSVKWTIEEKELFEQGLAKFGR----RWTKISKL--IGSRTVLQVKSYARQYFKN   56 (72)
T ss_dssp             SCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHH--HSSSCHHHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence            45668999999999999999992    34566665  4788999999998888543

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=84.12  E-value=1.8  Score=32.54  Aligned_cols=54  Identities=19%  Similarity=0.322  Sum_probs=40.7

Q ss_pred             CCCcccCHHHHHHHHHHHHhhCCCCCCChh---HHHhhhCCCCccHHHHHHhhhhhhcCC
Q 017478           34 KPRLRWTVELHERFVDAVTQLGGPDKATPK---TIMRVMGVKGLTLYHLKSHLQKFRLGK   90 (371)
Q Consensus        34 KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK---~IL~lM~V~gLT~~hVkSHLQKYRl~~   90 (371)
                      ..+=.||+|=+++|+++|..+| .+...|.   .|-+.|  +|=|-.+|+.|-++|-...
T Consensus         6 ~~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~~   62 (75)
T 2yum_A            6 SGNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIKL   62 (75)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGGG
T ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHHH
Confidence            3455899999999999999999 2222233   455554  6889999999999996543

>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}

Probab=83.75  E-value=0.67  Score=37.41  Aligned_cols=56  Identities=18%  Similarity=0.198  Sum_probs=35.0

Q ss_pred             CCCCcccCHHHHHHHHHHHHhhCCCCCCChhH----------------HHhhhCCCCccHHHHHHhhhhhhcC
Q 017478           33 PKPRLRWTVELHERFVDAVTQLGGPDKATPKT----------------IMRVMGVKGLTLYHLKSHLQKFRLG   89 (371)
Q Consensus        33 ~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~----------------IL~lM~V~gLT~~hVkSHLQKYRl~   89 (371)
                      .+..=+|.++|-..|++|++..--....+-+-                |...-| .-=|+.+|.||||.-|..
T Consensus         3 ~~~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tG-k~RtrKQVSShiQvlk~~   74 (82)
T 2hzd_A            3 NDAEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTG-KTRTRKQVSSHIQVLARR   74 (82)
T ss_dssp             GGGSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHS-CCCCSHHHHHHHHHHHHH
T ss_pred             CCcCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHc-ccCCccchhHHHHHHHHH
Confidence            34556899999999999998775111222110                111111 334788999999977654

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=80.29  E-value=3  Score=42.73  Aligned_cols=51  Identities=27%  Similarity=0.393  Sum_probs=42.9

Q ss_pred             CCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCccHHHHHHhhhhhhcCC
Q 017478           34 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGK   90 (371)
Q Consensus        34 KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVkSHLQKYRl~~   90 (371)
                      +..-+||.|=|..|++||.+.|-    .=+.|-+.++-.  |..+|++|.++||...
T Consensus       378 ~~~~~WT~eE~~~f~~al~~yGk----dw~~IA~~VgTK--T~~Qvk~fy~~~kkr~  428 (482)
T 2xag_B          378 KCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIGNK--SVVQVKNFFVNYRRRF  428 (482)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHTT----CHHHHHHHHSSC--CHHHHHHHHHHTTTTT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHhCCC--CHHHHHHHHHHHHHHh
Confidence            55789999999999999999992    456788886654  8999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	371
d1irza_	64	a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th	2e-23

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 90.4 bits (224), Expect = 2e-23
 Identities = 29/59 (49%), Positives = 39/59 (66%), Gaps = 1/59 (1%)

Query: 30 TTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 88
          T   KPR+ WT ELH +F+ AV  LG  ++A PK I+ +M V  LT  ++ SHLQKFR+
Sbjct: 1  TAQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRV 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	371
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	99.92
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	89.57
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	83.72

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.92  E-value=3.5e-26  Score=174.65  Aligned_cols=60  Identities=48%  Similarity=0.788  Sum_probs=57.0

Q ss_pred             cCCCCCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCccHHHHHHhhhhhhcCC
Q 017478           30 TTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGK   90 (371)
Q Consensus        30 s~~~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVkSHLQKYRl~~   90 (371)
                      |..+|+|++||+|||++||+||++||+ ++|+||.|++.|+|+|||++||+|||||||+.+
T Consensus         1 s~~kk~R~~WT~elH~~Fv~Av~~lG~-~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~l   60 (64)
T d1irza_           1 TAQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVAL   60 (64)
T ss_dssp             CCCCCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCc-cccchHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence            467899999999999999999999985 899999999999999999999999999999875

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.57  E-value=0.34  Score=33.94  Aligned_cols=48  Identities=21%  Similarity=0.412  Sum_probs=39.1

Q ss_pred             CcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCccHHHHHHhhhhhhcC
Q 017478           36 RLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLG   89 (371)
Q Consensus        36 RLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVkSHLQKYRl~   89 (371)
                      ..+||+|=++.|++||...|.    .=..|-+.|  ++=|..+|++|-++|...
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~ry~~~~~~   49 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQYFKN   49 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhcc----hHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence            468999999999999999993    344676665  478999999999988543

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.72  E-value=1.2  Score=29.91  Aligned_cols=44  Identities=20%  Similarity=0.273  Sum_probs=35.1

Q ss_pred             ccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCccHHHHHHhhhhh
Q 017478           38 RWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKF   86 (371)
Q Consensus        38 rWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVkSHLQKY   86 (371)
                      .||.|=+.+|++||.+.| ..  .=+.|-+.|+  +=|..+++.|-++|
T Consensus         3 ~Wt~eEd~~L~~~v~~~G-~~--nW~~Ia~~~~--~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCG-FG--NWQDVANQMC--TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTC-TT--CHHHHHHHHT--TSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHC-Cc--cHHHHHHHcC--CCCHHHHHHHHHHh
Confidence            499999999999999998 21  2446666765  56899999998876