Citrus Sinensis ID: 017479

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-
Protein Sequence
MEKREAETSISMANSTLLSDENPAGGYGLGGIFDMSCEGDKWDAASFGFMDLLNVQNHNTNYNNQDFGGDSFLFSNTLHPPPPAAAPILPPPPPQPSPAPESSEVLNNPATPNSSSISSSSNEAAANNTNNEEQTDTNNNNNNNNNSSSKAGDDDEQEQDKTKKQLKPKKKNQKKQREPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPRGSIGIMANDHNSTATFGASSSFVIPQPQYLQLHHQQQPYIYSSSPPLNLITSNATSTTANSSFNNPTFSSFVHHHQAERRNTMISPSQASLFHDHGLLQDIVPSQMRNEPKDEHI
Secondary Structure (PSIPRED)
ccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccEEEEEEcccccccccccHHHHccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccHHHcccEEEccccccccEEEEccccccccEEEEEccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccc
Coil and Loop (DISEMBL)
mekreaetSISMANStllsdenpaggyglggifdmscegdkwdaasfgfMDLLNvqnhntnynnqdfggdsflfsntlhppppaaapilpppppqpspapessevlnnpatpnsssissssneaaanntnneeqtdtnnnnnnnnnssskagdddeqeqdktkkqlkpkkknqkkqreprfafmtksdidhlddgyrwrkygqkavknsphprsyyrctsagcgvkkrverssedptivvttyegqhihpspitprgsigimandhnstatfgasssfvipqpqylqlhhqqqpyiyssspplnlitsnatsttanssfnnptfssfvhhhqaerrntmispsqaslfhdhgllqdivpsqmrnepkdehi
Flexible Loop (DISEMBL)
mekreaetSISMANSTLLSDENPAGGYGLGGIFDMSCEGDKWDAASFGFMDLLNVQNHNTNYNNQDFGGDSFLFSNTLHPPPPAAAPILPPPPPQPSPAPESSEVLNNPATPNSSSISSSSNEAAANNTNNeeqtdtnnnnnnnnnssskagdddeqeqdktkkqlkpkkknqkkqreprfafmtksdidhlddGYRWRKYGQkavknsphprsyyrctsagcgvkkrverssedptivvttyegqhihpspiTPRGSIGIMANDHNSTATFGASSSFVIPQPQYLQLHHQQQPYIYSSSPPLNLITSNATSTTANSSFNNPTFSSFVHHHQAERRNTMISPSQASLFHDHGLLQdivpsqmrnepkdehi
Low Complexity Region (SEG)
MEKREAETSISMANSTLLSDENPAGGYGLGGIFDMSCEGDKWDAASFGFMDLLnvqnhntnynnQDFGGDSFLFSNTLHppppaaapilpppppqpspapESSEVLnnpatpnsssissssneaaanntnneeqtdtnnnnnnnnnsssKAGdddeqeqdktkkqlkpkkknqkkqREPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPRGSIGIMANDHNSTATFGASSSFVipqpqylqlhhqqqpyiySSSPPLNLItsnatsttanssfnnptfssfVHHHQAERRNTMISPSQASLFHDHGLLQDIVPSQMRNEPKDEHI
Disordered region (IsUnstruct)
************************GGYGLGGIFDMSCEGDKWDAASFGFMDLLNVQNHNTNYNNQDFGGDSFLF****************************************************************************************************************SDIDHLDDGYRWRKYGQKAV******RSYYRCTSAGCGVK**********TIVVTTYEGQHIH*********IGIMA******ATFGASSSFVIPQPQYLQLHHQQQPYIY**************************************************************************
Disordered Region (DISOPRED)
****************************************************************************************************************************************************************************************TKSDIDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHP*******************************************************************************************************LQDI**************
Disordered Region (DISEMBL)
**********SMANSTLLSDENPAGGYGLGGIFDMSCEGDKWDAASFGFMDLLNVQNHNTNYNNQDFGGDSFLFSNTLHPPPPAAAPILPPP********************************************TNNNNNNNNN********************************PRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPRGSIGIMANDHNSTATFGASSSFVIPQPQYLQLHHQQQPYIYSSSPPLNLITSNATSTTANSSFNNPTFSSFVHHHQAERRNTMISPSQASLFHDHGLLQDIVPSQM*********
Disordered Region (DISPRO)
**************STLLSDENPAGGYGLGGIFDMSCEGDKWDAASFGFMDLLNV*************************************************************************************************************************REPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHI*******************************************************************************************************GLL*DIVPSQ**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKREAETSISMANSTLLSDENPAGGYGLGGIFDMSCEGDKWDAASFGFMDLLNVQNHNTNYNNQDFGGDSFLFSNTLHPPPPAAAPILPPPPPQPSPAPESSEVLNNPATPNSSSISSSSNEAAANNTNNEEQTDTNNNNNNNNNSSSKAGDDDEQEQDKTKKQLKPKKKNQKKQREPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPRGSIGIMANDHNSTATFGASSSFVIPQPQYLQLHHQQQPYIYSSSPPLNLITSNATSTTANSSFNNPTFSSFVHHHQAERRNTMISPSQASLFHDHGLLQDIVPSQMRNEPKDEHI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	371	2.2.26 [Sep-21-2011]
Q9FGZ4	399	Probable WRKY transcripti	yes	no	0.665	0.619	0.509	5e-53
O22900	337	Probable WRKY transcripti	no	no	0.762	0.839	0.412	2e-45
Q8VWJ2	318	Probable WRKY transcripti	no	no	0.566	0.660	0.426	7e-40
Q9C983	287	Probable WRKY transcripti	no	no	0.525	0.679	0.434	1e-38
Q93WV4	282	Probable WRKY transcripti	no	no	0.425	0.560	0.476	4e-36
Q9FL26	326	Probable WRKY transcripti	no	no	0.312	0.355	0.560	7e-33
Q93WV6	277	Probable WRKY transcripti	no	no	0.592	0.794	0.351	2e-31
Q93WY4	218	Probable WRKY transcripti	no	no	0.277	0.472	0.584	2e-30
Q9SVB7	304	Probable WRKY transcripti	no	no	0.226	0.276	0.682	3e-30
Q9ZQ70	513	Probable WRKY transcripti	no	no	0.460	0.333	0.389	1e-28

>sp|Q9FGZ4|WRK48_ARATH Probable WRKY transcription factor 48 OS=Arabidopsis thaliana GN=WRKY48 PE=2 SV=1

 Score =  208 bits (530), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 141/277 (50%), Positives = 180/277 (64%), Gaps = 30/277 (10%)

Query: 96  PSPAPESSEVLNNPATPNSSSISSSSNEAAANNTNNEEQTDTNNNNNNNNNSSSKAGDDD 155
           P P  ESSEV+N   T  +S+  SSS+  AAN+ N+ ++    +    +     K     
Sbjct: 134 PLPQAESSEVVNTTPTSPNSTSVSSSSNEAANDNNSGKEVTVKDQEEGDQQQEQKG---- 189

Query: 156 EQEQDKTKKQLKPKKKNQKKQREPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPHPRSY 215
                 TK QLK KKKNQKK RE RFAF+TKSDID+LDDGYRWRKYGQKAVKNSP+PRSY
Sbjct: 190 ------TKPQLKAKKKNQKKAREARFAFLTKSDIDNLDDGYRWRKYGQKAVKNSPYPRSY 243

Query: 216 YRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPRGSIGIMAN---DHNSTATF 272
           YRCT+ GCGVKKRVERSS+DP+IV+TTYEGQH HP P+TPRG IG++ +   DH   AT 
Sbjct: 244 YRCTTVGCGVKKRVERSSDDPSIVMTTYEGQHTHPFPMTPRGHIGMLTSPILDHG--ATT 301

Query: 273 GASSSFVIPQPQYLQLHHQQQPYIYSSSPPLNLITSNATSTTANSSFNNP----TFSSFV 328
            +SSSF IPQP+YL   H  QPY   ++  L++I   +    ++ +F NP    +F  F 
Sbjct: 302 ASSSSFSIPQPRYLLTQH-HQPYNMYNNNSLSMINRRS----SDGTFVNPGPSSSFPGFG 356

Query: 329 HHHQAERRNTMISPSQASLFHDHGLLQDIVPSQMRNE 365
           +        +  S S +S   DHGLLQDI+PSQ+R++
Sbjct: 357 YDM------SQASTSTSSSIRDHGLLQDILPSQIRSD 387

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)

>sp|O22900|WRK23_ARATH Probable WRKY transcription factor 23 OS=Arabidopsis thaliana GN=WRKY23 PE=2 SV=1

 Score =  183 bits (464), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 141/342 (41%), Positives = 174/342 (50%), Gaps = 59/342 (17%)

Query: 46  SFGFMDLLNVQNHNTNYNNQDFGG---DSFLFSNTLHP------PPPAAAPILPPPPPQP 96
           S GFM+LL+ Q H      QDF      SFL   +            +++ I  PP  Q 
Sbjct: 32  SLGFMELLSSQQH------QDFATVSPHSFLLQTSQPQTQTQPSAKLSSSIIQAPPSEQL 85

Query: 97  SPAPESSE-----VLNNPATPNSSSISSSSNEAAANNTNNEEQTDTNNNNNNNNNSSSKA 151
             +   S      ++N PATPNSSSISS+S+EA      NEE+  T +N         + 
Sbjct: 86  VTSKVESLCSDHLLINPPATPNSSSISSASSEAL-----NEEKPKTEDNEEEGGEDQQE- 139

Query: 152 GDDDEQEQDKTKKQLKPKKKNQKKQREPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPH 211
                  +  TKKQLK KK NQK+QRE R AFMTKS++DHL+DGYRWRKYGQKAVKNSP 
Sbjct: 140 -------KSHTKKQLKAKKNNQKRQREARVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPF 192

Query: 212 PRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPR--------GSIGIMA 263
           PRSYYRCT+A C VKKRVERS  DP+ VVTTYEGQH H SP+T R        GS G  +
Sbjct: 193 PRSYYRCTTASCNVKKRVERSFRDPSTVVTTYEGQHTHISPLTSRPISTGGFFGSSGAAS 252

Query: 264 NDHNSTATFGASSSFVIPQPQYLQLHHQQQPYIYSSSPPLNLITSNATSTTANSSFNNPT 323
           +  N    F    S +I  PQ+ QL                            S F    
Sbjct: 253 SLGNGCFGFPIDGSTLI-SPQFQQLVQY---------------HHQQQQQELMSCFGG-- 294

Query: 324 FSSFVHHHQAERRNTMISPSQASLFHDHGLLQDIVPSQMRNE 365
            + +++ H  E  +         L  D+GLLQD+VPS M  E
Sbjct: 295 VNEYLNSHANEYGDDNRVKKSRVLVKDNGLLQDVVPSHMLKE 336

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VWJ2|WRK28_ARATH Probable WRKY transcription factor 28 OS=Arabidopsis thaliana GN=WRKY28 PE=2 SV=1

 Score =  164 bits (416), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 96/225 (42%), Positives = 132/225 (58%), Gaps = 15/225 (6%)

Query: 45  ASFGFMDLLNVQNHN-TNYNN----QDFGGDSFLFSNTLHPPPPAAAPILPPPPPQPSPA 99
           +SF   +++N+   N ++Y N      F   ++ F++ L   P A   +L         +
Sbjct: 15  SSFSLHEMMNLPTSNPSSYGNLPSQNGFNPSTYSFTDCLQSSPAAYESLLQK---TFGLS 71

Query: 100 PESSEVLNNPA--TPNSSSISSSSNEAAANNTNNEEQTDTNNNNN----NNNNSSSKAGD 153
           P SSEV N+     PN    +   N  A N T        ++++       ++  S+   
Sbjct: 72  PSSSEVFNSSIDQEPNRDVTNDVINGGACNETETRVSPSNSSSSEADHPGEDSGKSRRKR 131

Query: 154 DDEQEQDKTKKQL-KPKKKNQKKQREPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPHP 212
           +   E+D+  K++ K KK   KKQREPR +FMTKS++DHL+DGYRWRKYGQKAVKNSP+P
Sbjct: 132 ELVGEEDQISKKVGKTKKTEVKKQREPRVSFMTKSEVDHLEDGYRWRKYGQKAVKNSPYP 191

Query: 213 RSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPRG 257
           RSYYRCT+  C VKKRVERS +DPT+V+TTYEGQH HP P   RG
Sbjct: 192 RSYYRCTTQKCNVKKRVERSFQDPTVVITTYEGQHNHPIPTNLRG 236

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C983|WRK57_ARATH Probable WRKY transcription factor 57 OS=Arabidopsis thaliana GN=WRKY57 PE=2 SV=1

 Score =  160 bits (405), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/230 (43%), Positives = 129/230 (56%), Gaps = 35/230 (15%)

Query: 138 NNNNNNNNNSSSKAGDDDEQEQDKT---KKQLKPKKKNQKKQREPRFAFMTKSDIDHLDD 194
           NNN +  ++SS    ++     +KT   +  +K KKK QK+ R+PRFAFMTKSD+D+L+D
Sbjct: 89  NNNPSATSSSSEDPAENSTASAEKTPPPETPVKEKKKAQKRIRQPRFAFMTKSDVDNLED 148

Query: 195 GYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPIT 254
           GYRWRKYGQKAVKNSP PRSYYRCT++ C VKKRVERSS+DP+IV+TTYEGQH H +   
Sbjct: 149 GYRWRKYGQKAVKNSPFPRSYYRCTNSRCTVKKRVERSSDDPSIVITTYEGQHCHQTIGF 208

Query: 255 PRGSIGIMANDHNSTATFGASSSFVIPQPQYLQLHHQQQPYIYSSSPPLNLITSNATSTT 314
           PRG I + A+D +S  +       +     Y +L HQ      + SP L   T+  T   
Sbjct: 209 PRGGI-LTAHDPHSFTSHHHLPPPLPNPYYYQELLHQLHRDNNAPSPRLPRPTTEDTPAV 267

Query: 315 ANSSFNNPTFSSFVHHHQAERRNTMISPSQASLFHDHGLLQDIVPSQMRN 364
           +  S                               + GLL DIVP  MRN
Sbjct: 268 STPS-------------------------------EEGLLGDIVPQTMRN 286

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WV4|WRK71_ARATH Probable WRKY transcription factor 71 OS=Arabidopsis thaliana GN=WRKY71 PE=2 SV=1

 Score =  152 bits (384), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 92/193 (47%), Positives = 111/193 (57%), Gaps = 35/193 (18%)

Query: 177 REPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDP 236
           RE R AFMTKS+IDHL+DGYRWRKYGQKAVKNSP+PRSYYRCT+  C VKKRVERS +DP
Sbjct: 120 REVRVAFMTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDP 179

Query: 237 TIVVTTYEGQHIHPSPITPRGSIGIMANDHNSTATFGASS---SFVIPQPQYLQLHHQQQ 293
           +IV+TTYEG+H HP P T RG++   A +H      G  S   SF      +L + H   
Sbjct: 180 SIVITTYEGKHNHPIPSTLRGTV---AAEHLLVHRGGGGSLLHSFPRHHQDFLMMKHS-- 234

Query: 294 PYIYSSSPPLNLITSNATSTTANSSFNNPTFSSFVHHHQAERRNTMISPSQASLFHDHGL 353
           P  Y S   L+    + TS+  N + N P                           D+GL
Sbjct: 235 PANYQSVGSLSYEHGHGTSS-YNFNNNQPVV-------------------------DYGL 268

Query: 354 LQDIVPSQM-RNE 365
           LQDIVPS   +NE
Sbjct: 269 LQDIVPSMFSKNE 281

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL26|WRKY8_ARATH Probable WRKY transcription factor 8 OS=Arabidopsis thaliana GN=WRKY8 PE=2 SV=1

 Score =  141 bits (356), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 69/123 (56%), Positives = 94/123 (76%), Gaps = 7/123 (5%)

Query: 151 AGDDDEQEQDKTKKQLKPKKKNQKKQREPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSP 210
            G+DD++ Q   K +     K ++K++EPR +FMTK+++DHL+DGYRWRKYGQKAVKNSP
Sbjct: 146 GGEDDQRSQKVVKTK-----KKEEKKKEPRVSFMTKTEVDHLEDGYRWRKYGQKAVKNSP 200

Query: 211 HPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPRGSI--GIMANDHNS 268
           +PRSYYRCT+  C VKKRVERS +DPT+V+TTYE QH HP P   R ++  G  A+D+N 
Sbjct: 201 YPRSYYRCTTQKCNVKKRVERSYQDPTVVITTYESQHNHPIPTNRRTAMFSGTTASDYNP 260

Query: 269 TAT 271
           +++
Sbjct: 261 SSS 263

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WV6|WRK68_ARATH Probable WRKY transcription factor 68 OS=Arabidopsis thaliana GN=WRKY68 PE=2 SV=1

 Score =  136 bits (343), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/276 (35%), Positives = 133/276 (48%), Gaps = 56/276 (20%)

Query: 99  APESSEVLNNPATPNSSSISSSSNEAAANNTNNEEQTDTNNNNNNNNNSSSKAGDDDEQE 158
            P  + +++ P TPNSSS S + N       + EEQ             S K        
Sbjct: 47  TPTHTPLMHFPTTPNSSS-SEAVNGDDEEEEDGEEQQHKTKKRFKFTKMSRK-------- 97

Query: 159 QDKTKKQLKPKKKNQKKQREPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPHPRSYYRC 218
                         Q K++ P+ +F+T+S++ HLDDGY+WRKYGQK VK+SP PR+YYRC
Sbjct: 98  --------------QTKKKVPKVSFITRSEVLHLDDGYKWRKYGQKPVKDSPFPRNYYRC 143

Query: 219 TSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPRGSIGIMANDHNSTATFGASSSF 278
           T+  C VKKRVERS  DP+ V+TTYEGQH HP P+       IM  + +S +   AS + 
Sbjct: 144 TTTWCDVKKRVERSFSDPSSVITTYEGQHTHPRPLL------IMPKEGSSPSNGSASRAH 197

Query: 279 V-IPQ--PQYLQLHHQQQPYIYSSSPPLNLITSNATSTTANSSFN------NPTFSSFVH 329
           + +P   PQ L  ++QQQ                A S+      N      N        
Sbjct: 198 IGLPTLPPQLLDYNNQQQ---------------QAPSSFGTEYINRQEKGINHDDDDDHV 242

Query: 330 HHQAERRNTMISPSQASLFHDHGLLQDIVPSQMRNE 365
             ++  R+ +     A L  DHGLLQD+VPS +  E
Sbjct: 243 VKKSRTRDLL---DGAGLVKDHGLLQDVVPSHIIKE 275

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WY4|WRK12_ARATH Probable WRKY transcription factor 12 OS=Arabidopsis thaliana GN=WRKY12 PE=2 SV=1

 Score =  133 bits (335), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/113 (58%), Positives = 79/113 (69%), Gaps = 10/113 (8%)

Query: 137 TNNNNNNNNNSSSKAGDDDEQEQDKTKKQLKPKKKNQKKQREPRFAFMTKSDIDHLDDGY 196
           TNN+ ++N+   S +G  D          +K K K ++K REPRF F TKSD+D LDDGY
Sbjct: 99  TNNDAHSNSWWRSNSGSGD----------MKNKVKIRRKLREPRFCFQTKSDVDVLDDGY 148

Query: 197 RWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIH 249
           +WRKYGQK VKNS HPRSYYRCT   C VKKRVER SED  +V+TTYEG+H H
Sbjct: 149 KWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNH 201

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SVB7|WRK13_ARATH Probable WRKY transcription factor 13 OS=Arabidopsis thaliana GN=WRKY13 PE=2 SV=1

 Score =  132 bits (333), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 58/85 (68%), Positives = 69/85 (81%), Gaps = 1/85 (1%)

Query: 166 LKPKK-KNQKKQREPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCG 224
           LK KK K ++K REPRF F T S++D LDDGYRWRKYGQK VKN+ HPRSYYRCT   C 
Sbjct: 195 LKMKKLKTRRKVREPRFCFKTLSEVDVLDDGYRWRKYGQKVVKNTQHPRSYYRCTQDKCR 254

Query: 225 VKKRVERSSEDPTIVVTTYEGQHIH 249
           VKKRVER ++DP +V+TTYEG+H+H
Sbjct: 255 VKKRVERLADDPRMVITTYEGRHLH 279

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQ70|WRKY3_ARATH Probable WRKY transcription factor 3 OS=Arabidopsis thaliana GN=WRKY3 PE=2 SV=1

 Score =  127 bits (319), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 69/177 (38%), Positives = 103/177 (58%), Gaps = 6/177 (3%)

Query: 101 ESSEVLNNPATPNSSSISSSSNEAAANNTNNEEQTDTNNNNNNNNNSSSKAGDDDEQEQD 160
           +SS++ N   T NSS   S  ++  +  T  E+ ++ +++    N  +S  G+  E E D
Sbjct: 319 KSSDIANQFQTSNSSLNKSKRDQETSQVTTTEQMSEASDSEEVGNAETS-VGERHEDEPD 377

Query: 161 KTKKQLK-----PKKKNQKKQREPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPHPRSY 215
             ++  +     P   + +   EPR    T S++D LDDGYRWRKYGQK VK +P+PRSY
Sbjct: 378 PKRRNTEVRVSEPVASSHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSY 437

Query: 216 YRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPRGSIGIMANDHNSTATF 272
           Y+CT+  CGV+K VER++ DP  VVTTYEG+H H  P     S  +  N+ ++T+T 
Sbjct: 438 YKCTTPDCGVRKHVERAATDPKAVVTTYEGKHNHDVPAARTSSHQLRPNNQHNTSTV 494

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	371
255556432	351	WRKY transcription factor, putative [Ric	0.789	0.834	0.605	1e-82
259121427	367	WRKY transcription factor 31 [(Populus t	0.768	0.776	0.584	1e-78
224108768	290	predicted protein [Populus trichocarpa]	0.754	0.965	0.587	2e-77
225432004	309	PREDICTED: probable WRKY transcription f	0.827	0.993	0.529	1e-70
410111032	400	WRKY transcription factor 31 [Dimocarpus	0.919	0.852	0.560	3e-68
294861116	303	WRKY1 [Hevea brasiliensis]	0.800	0.980	0.456	1e-64
449466951	280	PREDICTED: probable WRKY transcription f	0.619	0.821	0.539	2e-63
302399139	385	WRKY domain class transcription factor [	0.938	0.903	0.443	6e-63
255548389	317	WRKY transcription factor, putative [Ric	0.760	0.889	0.481	2e-58
356519913	391	PREDICTED: probable WRKY transcription f	0.962	0.913	0.465	2e-55

>gi|255556432|ref|XP_002519250.1| WRKY transcription factor, putative [Ricinus communis] gi|223541565|gb|EEF43114.1| WRKY transcription factor, putative [Ricinus communis]

 Score =  312 bits (800), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 212/350 (60%), Positives = 238/350 (68%), Gaps = 57/350 (16%)

Query: 32  IFDMS--CEGDKWDAASFGFMDLLNVQNHNTNYNNQDFGGDSFLFSNTLHPPPPAAAPIL 89
           IFDM   C+       S GF+DLL+        NNQDFG  S LF            PIL
Sbjct: 47  IFDMMMPCDYMGEKGYSLGFLDLLDG-------NNQDFGATSSLFDWFQF-----QTPIL 94

Query: 90  P-----PPPPQPSPA---PESSEVLNNPATPNSSSISSSSNEAAANNTNNEEQTDTNNNN 141
           P        P PSPA   PE+SEVLN PATPNSSSISSSSNEA  +++            
Sbjct: 95  PDHHQQQQQPLPSPASTVPETSEVLNTPATPNSSSISSSSNEAGIDSS------------ 142

Query: 142 NNNNNSSSKAGDDDEQEQDKTKKQLKPKKKNQKKQREPRFAFMTKSDIDHLDDGYRWRKY 201
                S  KAGD+DEQ+QDK KKQLKPKKKNQK+QREPRFAFMTKS++DHLDDGYRWRKY
Sbjct: 143 -----SQVKAGDEDEQDQDKNKKQLKPKKKNQKRQREPRFAFMTKSEVDHLDDGYRWRKY 197

Query: 202 GQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPRGSIGI 261
           GQKAVKNSP+PRSYYRCTSAGCGVKKRVERSSED TIVVTTYEGQH HPSP+TPRGSIG 
Sbjct: 198 GQKAVKNSPYPRSYYRCTSAGCGVKKRVERSSEDNTIVVTTYEGQHTHPSPVTPRGSIGF 257

Query: 262 MANDHNSTATFGASSSFVIPQPQ-YLQLHHQQQPYIYSSSPPLNLITSNATSTTANSSFN 320
           +    +S+A   A+SSFVIPQP+ Y Q   QQ  Y+YSSSP LN+ TS ++S        
Sbjct: 258 LP---DSSAFGAANSSFVIPQPRPYQQQQQQQHAYMYSSSPSLNITTSTSSSI------- 307

Query: 321 NPTFS-SFVHHHQAERRNTMISPSQASLFHDHGLLQDIVPSQMRNEPKDE 369
           NP FS SF+HH   ERR    SPS ASL  DHGLLQDIVPSQMR +  +E
Sbjct: 308 NPPFSPSFLHH---ERR---FSPSPASLVRDHGLLQDIVPSQMRKDATEE 351

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|259121427|gb|ACV92033.1| WRKY transcription factor 31 [(Populus tomentosa x P. bolleana) x P. tomentosa]

 Score =  300 bits (767), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 205/351 (58%), Positives = 237/351 (67%), Gaps = 66/351 (18%)

Query: 29  LGGIFDMS-CE--GDKWDAASFGFMDLLNVQNHNTNYNNQDFGGDSFLFSNTLHPPPPAA 85
           L  IFDM  C+  G    A S GF+DLL++        NQDFG  + LF         A 
Sbjct: 73  LNSIFDMMPCDIIGGDQKAGSLGFIDLLDI--------NQDFGTAASLFDWF------AQ 118

Query: 86  APILPPPPPQ---PSPA---PESSEVLNNPATPNSSSISSSSNEAAANNTNNEEQTDTNN 139
            PI+     Q   PSPA   PE+SEVLNNPATPNSS+  SSS+  A N+   + +T    
Sbjct: 119 NPIVGSQQQQTFVPSPASALPETSEVLNNPATPNSSASISSSSNEAGNDAFQQVKT---- 174

Query: 140 NNNNNNNSSSKAGD-DDEQEQDKTKKQLKPKKKNQKKQREPRFAFMTKSDIDHLDDGYRW 198
                       GD ++EQ+ DKTKKQLKPKKKNQK+QREPRFAFMTKS++DHLDDG+RW
Sbjct: 175 ------------GDQEEEQDHDKTKKQLKPKKKNQKRQREPRFAFMTKSEVDHLDDGFRW 222

Query: 199 RKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPRGS 258
           RKYGQKAVKNSP+PRSYYRCTSAGCGVKKRVERSS+D +IVVTTYEGQHIHPSPITPRGS
Sbjct: 223 RKYGQKAVKNSPYPRSYYRCTSAGCGVKKRVERSSDDSSIVVTTYEGQHIHPSPITPRGS 282

Query: 259 IGIMANDHNSTATFGASSSFVIPQPQYLQLHHQQQPYIYSSSPPLNLITSNATSTTANSS 318
           IGI+    +ST    A+SSFVIP+ QY     QQ  Y+YSSSP LN+       TT+N+S
Sbjct: 283 IGILT---DSTGFGAATSSFVIPETQY-----QQHAYMYSSSPSLNI-------TTSNTS 327

Query: 319 FNNPTFSSFVHHHQAERRNTMISPSQASLFHDHGLLQDIVPSQMRNEPKDE 369
           F +PTFS     HQ  RR    S S ASL  DHGLLQDIVPSQMR EPK+E
Sbjct: 328 F-SPTFS----FHQ--RR----SDSPASLLRDHGLLQDIVPSQMRKEPKEE 367

Source: (Populus tomentosa x P. bolleana) x P. tomentosa

Species: (Populus tomentosa x P. bolleana) x P. tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108768|ref|XP_002314962.1| predicted protein [Populus trichocarpa] gi|222864002|gb|EEF01133.1| predicted protein [Populus trichocarpa]

 Score =  295 bits (755), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 202/344 (58%), Positives = 236/344 (68%), Gaps = 64/344 (18%)

Query: 33  FDMSCEGDKWDAASFGFMDLLNVQNHNTNYNNQDFGGDSFLFSNTLHPPPPAAAPILPPP 92
           FD+   GD+  A S GF DLL++        NQDFG  + LF         A  PI+   
Sbjct: 4   FDI-IGGDQ-KAGSLGFTDLLDI--------NQDFGAAASLFDWF------AQNPIVGSQ 47

Query: 93  PPQ---PSPA---PESSEVLNNPATPNSSSISSSSNEAAANNTNNEEQTDTNNNNNNNNN 146
             Q   PSPA   PE+SEVLNNPATPNSS+  SSS+  A N+   + +T           
Sbjct: 48  QQQTFVPSPASTLPETSEVLNNPATPNSSASISSSSNEAGNDAFQQVKT----------- 96

Query: 147 SSSKAGD-DDEQEQDKTKKQLKPKKKNQKKQREPRFAFMTKSDIDHLDDGYRWRKYGQKA 205
                GD ++EQ+ DKTKKQLKPKKKNQK+QREPRFAFMTKS++DHLDDG+RWRKYGQKA
Sbjct: 97  -----GDQEEEQDHDKTKKQLKPKKKNQKRQREPRFAFMTKSEVDHLDDGFRWRKYGQKA 151

Query: 206 VKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPRGSIGIMAND 265
           VKNSP+PRSYYRCTSAGCGVKKRVERSS+D +IVVTTYEGQHIHPSP+TPRGSIGI++  
Sbjct: 152 VKNSPYPRSYYRCTSAGCGVKKRVERSSDDSSIVVTTYEGQHIHPSPLTPRGSIGILS-- 209

Query: 266 HNSTATFGASSSFVIPQPQYLQLHHQQQPYIYSSSPPLNLITSNATSTTANSSFNNPTFS 325
            +ST    A+SSFVIPQ QY     QQ  Y+YSSSP LN+      +TT+N+SF +PTFS
Sbjct: 210 -DSTGFGAATSSFVIPQTQY-----QQHAYLYSSSPSLNI------NTTSNTSF-SPTFS 256

Query: 326 SFVHHHQAERRNTMISPSQASLFHDHGLLQDIVPSQMRNEPKDE 369
                HQ  RR    S S ASL  DHGLLQDIVPSQMR EPK+E
Sbjct: 257 ----FHQ--RR----SDSPASLLRDHGLLQDIVPSQMRKEPKEE 290

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432004|ref|XP_002279385.1| PREDICTED: probable WRKY transcription factor 48 [Vitis vinifera] gi|296083226|emb|CBI22862.3| unnamed protein product [Vitis vinifera]

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 195/368 (52%), Positives = 232/368 (63%), Gaps = 61/368 (16%)

Query: 2   EKREAETSISMANSTLLSDENPAGGYGLGGIFDMSCEGDKWDAASFGFMDLLNVQNHNTN 61
           EK + +T  SMANST  SD+ PA       IFDM CE +K    S GFMDLL +Q+++ +
Sbjct: 3   EKEQVKTENSMANSTF-SDQIPASCAFSSSIFDMPCEVEK---GSLGFMDLLGIQDYSPS 58

Query: 62  YNNQDFGGDSFLFSNTLHPPPPAAAPILPPPPPQPSPAPESSEVLNNPATPNSSSISSSS 121
                      LF   L  PP A  P+  P    P   PESSEV+N PATPNSSSISSSS
Sbjct: 59  -----------LFD--LLQPPLAPHPLTSPASSAP---PESSEVVNAPATPNSSSISSSS 102

Query: 122 NEAAANNTNNEEQTDTNNNNNNNNNSSSKAGDDDEQEQDKTKKQLKPKKKNQKKQREPRF 181
            EAA     N++QT              KA +++EQ+Q+K K+QLKPKKKNQK+QREPRF
Sbjct: 103 TEAA-----NDDQT--------------KAAEEEEQDQEKNKQQLKPKKKNQKRQREPRF 143

Query: 182 AFMTKSDIDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVT 241
           AF+TKS++DHLDDGYRWRKYGQKAVKNSP PRSYYRCT+A CGVKKRVERSS+DPT VVT
Sbjct: 144 AFITKSEVDHLDDGYRWRKYGQKAVKNSPFPRSYYRCTTAACGVKKRVERSSDDPTTVVT 203

Query: 242 TYEGQHIHPSPITPRGSIGIMANDHNSTATFGASSSFVIPQPQYLQLHHQQQPYIYSSSP 301
           TYEGQH HP P+ PRGS+GI       +A   +S +         Q   QQQPY  +SS 
Sbjct: 204 TYEGQHTHPCPVMPRGSLGIPPEAVTFSAAAASSFAM-----PQPQYQQQQQPYFNNSSL 258

Query: 302 PLNLITSNATSTTANSSFNNPTFSSFVHHHQAERRNTMISPSQASLFHDHGLLQDIVPSQ 361
            LN           NSS  NPT   F+H    ERR   + PS ASL  DHGLL+D++PSQ
Sbjct: 259 SLNF-------NHMNSSSINPT---FLH----ERR---LRPSPASLLRDHGLLEDLLPSQ 301

Query: 362 MRNEPKDE 369
           M  EPK+E
Sbjct: 302 MFKEPKEE 309

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|410111032|gb|AEO31516.2| WRKY transcription factor 31 [Dimocarpus longan]

 Score =  265 bits (677), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 214/382 (56%), Positives = 248/382 (64%), Gaps = 41/382 (10%)

Query: 13  ANSTLLSDENPAGGYGLGGIFDMSCE--GD-KW----DAASFGFMDLLNVQNHNTNYNNQ 65
           ANST   +  P        IFDM  +  GD KW         GF+DLLNV        +Q
Sbjct: 34  ANSTFPDEMIPISTTTSQNIFDMPYDQFGDYKWWGGGGGGGGGFVDLLNV--------SQ 85

Query: 66  DFGGDSFLFSNTLHPPPPAAAPILPPPPPQP------SPA---PESSEVLNNPATPNSSS 116
           DFG  S LF +   P P  + P   P PPQ       SPA   PESSEVLNNPATPNSSS
Sbjct: 86  DFGS-SVLFESMQQPLPVLSPPPPLPLPPQTTTTALRSPASTFPESSEVLNNPATPNSSS 144

Query: 117 ISSSSNEAAANNTNNEEQTDTNNNNNNNNNSSSKAGDDDEQEQDKTKKQLKPKKKNQKKQ 176
           ISSSSNEAA NN + E+       +NN+        DD EQ+QDKTKKQLKPKKKNQK+Q
Sbjct: 145 ISSSSNEAA-NNIDQEQ-------SNNDKGGGGGDDDDQEQDQDKTKKQLKPKKKNQKRQ 196

Query: 177 REPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDP 236
           REPRFAFMTKS++DHLDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSS+DP
Sbjct: 197 REPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSDDP 256

Query: 237 TIVVTTYEGQHIHPSPITPRGS---IGIMANDHNSTATFGASSSFVIPQPQY-LQLHHQQ 292
           TIVVTTYEGQH HPSPITPRGS   IGI+ +D        +SSS  +PQPQY LQ HH Q
Sbjct: 257 TIVVTTYEGQHTHPSPITPRGSIGNIGILPHDAGVFNGGASSSSLAVPQPQYLLQHHHNQ 316

Query: 293 QPYIYSSSPPLNLITSNATSTTANSSFNNPTFS----SFVHHHQAERRNTMISPSQASLF 348
           QPY+Y+  P LNL T N+T T+ + + ++ +             +   ++    + ASL 
Sbjct: 317 QPYMYNPPPTLNLSTRNSTLTSTSFNPSSFSSFINQERSRVVASSSSSSSPAPSAAASLL 376

Query: 349 HDHGLLQDIVPSQMRNEPKDEH 370
            DHGLLQDIVPSQMR + +  H
Sbjct: 377 RDHGLLQDIVPSQMRRDHQPNH 398

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294861116|gb|ADF45433.1| WRKY1 [Hevea brasiliensis]

 Score =  253 bits (645), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 169/370 (45%), Positives = 211/370 (57%), Gaps = 73/370 (19%)

Query: 1   MEKREAETSISMANSTLLSDENPAGGYGLGGIFDMSCEGDKWDAASFGFMDLLNVQNHNT 60
           ME +E     ++  S+   D N    Y   G+FD  CEGDK   +S GFM+LL +Q    
Sbjct: 1   MEGKEEVKIDNIVGSSTFPD-NTQSSYPFQGVFDF-CEGDK---SSLGFMELLGMQ---- 51

Query: 61  NYNNQDFGGDSFLFSNTLHPP----PPAAAPILPPPPPQPSPAPESSEVLNNPATPNSSS 116
                DF    F   + L  P    P A+ P+        +   ES EVLN PATPNSSS
Sbjct: 52  -----DFSASVF---DMLQVPSVVQPAASNPV--------ATKMESPEVLNQPATPNSSS 95

Query: 117 ISSSSNEAAANNTNNEEQTDTNNNNNNNNNSSSKAGDDDEQEQDKTKKQLKPKKKNQKKQ 176
           ISS+S++A                    N+   K  D++E+EQ KT+K+LKPKK NQK+Q
Sbjct: 96  ISSASSDAL-------------------NDEPVKVADNEEEEQQKTRKELKPKKTNQKRQ 136

Query: 177 REPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDP 236
           REPRFAFMTKS++DHL+DGYRWRKYGQKAVKNSP PRSYYRCTSA C VKKRVERS  DP
Sbjct: 137 REPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSASCNVKKRVERSFSDP 196

Query: 237 TIVVTTYEGQHIHPSPITPRGSIGIMANDHNSTATFGASSSFVIPQPQYL-QLHHQQQPY 295
           +IVVTTYEGQH HPS +  R S    A++   +     +S+F +P  + L     QQQP+
Sbjct: 197 SIVVTTYEGQHTHPSAVMARPSFTGAASESGFS-----TSAFAMPMQRRLSHFQQQQQPF 251

Query: 296 IYSSSPPLNLITSNATSTTANSSFNNPTFSSFVHHHQAERRNTMISPSQASLFHDHGLLQ 355
                  LN  T+       N++      ++F+H    ERR    SP  + L  DHGLLQ
Sbjct: 252 -------LNSFTALGFGYKGNTN------ATFLH----ERR-FCTSPG-SDLLEDHGLLQ 292

Query: 356 DIVPSQMRNE 365
           DIVPS M NE
Sbjct: 293 DIVPSHMLNE 302

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449466951|ref|XP_004151189.1| PREDICTED: probable WRKY transcription factor 48-like [Cucumis sativus] gi|449524182|ref|XP_004169102.1| PREDICTED: probable WRKY transcription factor 48-like [Cucumis sativus]

 Score =  248 bits (634), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 156/289 (53%), Positives = 181/289 (62%), Gaps = 59/289 (20%)

Query: 93  PPQPSPA---PESSEVLNNPATPNSSSISSSSNEAAANNTNNEEQTDTNNNNNNNNNSSS 149
           PP  SPA   PESSEV+N P TPNSSS+SSSSNEAAA         + NN+   ++  S+
Sbjct: 38  PPLSSPASTVPESSEVVNAPTTPNSSSVSSSSNEAAAIE-------EVNNSTTTHDKPSA 90

Query: 150 KAGDDDEQEQDKTKKQLKPKKKNQKKQREPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNS 209
                         K LKP KKNQKKQREPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNS
Sbjct: 91  -------------SKVLKPIKKNQKKQREPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNS 137

Query: 210 PHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPRGSIGIMAN----- 264
           P+PRSYYRCT+AGCGVKKRVERSS D TIVVTTYEGQH H SPI PRGS+ ++       
Sbjct: 138 PYPRSYYRCTTAGCGVKKRVERSSGDHTIVVTTYEGQHTHQSPIMPRGSLRVLPESTNNS 197

Query: 265 ---DHNSTATFGASSSFVIPQPQYLQLHHQQQPYIYSSSPPLNLITSNATSTTANSSFNN 321
              DH++TAT              L  H+  QP++Y + PP   +T N++S  A+   +N
Sbjct: 198 LTVDHDTTAT------------GLLFQHNTSQPFMYIAPPP-PFLTINSSSVAAS---HN 241

Query: 322 PTFSSFVHHHQAERRNTMISPSQASLFHDHGLLQDIVPSQMRNEPKDEH 370
           P   SF              PS  +   DHGLLQD+VP QMR EPKDE 
Sbjct: 242 PPPISFQ------------PPSPQASVRDHGLLQDLVPLQMRKEPKDEQ 278

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302399139|gb|ADL36864.1| WRKY domain class transcription factor [Malus x domestica]

 Score =  247 bits (631), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 177/399 (44%), Positives = 224/399 (56%), Gaps = 51/399 (12%)

Query: 1   MEKREAET-----SISMANSTLLSDENPAGGYGLGGIFDM--SCEGDKWDAASFGFMDLL 53
           M+ RE E      S SMANS + SDE P       GIFDM  SCE  K      GF DLL
Sbjct: 1   MDGREEELKTTDRSNSMANSAVFSDEIPTNFPSFSGIFDMPSSCEDQKGSLG--GFTDLL 58

Query: 54  NVQNHNTNYNNQDFGGDSFLFSNTLHPPPPAAAPILPPPPPQ----PSPAPESSEVLNNP 109
            +          D+    F F  T      ++  ++PP   Q    P+PA  S+ V    
Sbjct: 59  GIP---------DYAPSLFDFPQTT-----SSLMMIPPHHNQQRSLPAPASTSTVV---- 100

Query: 110 ATPNSSSISSSSNEAAANNTNNEEQT-----------DTNNNNNNNNNSSSKAGDDDEQE 158
           A P   S ++++  +   N++    T           +   NNN    +  +  + DEQ+
Sbjct: 101 AMPERESATTTNTTSEVLNSSTAPTTPNSSSISSSSNEAAANNNEGQMTKVQEEEADEQD 160

Query: 159 QDKTKKQLKPKKKNQKKQREPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPHPRSYYRC 218
            +KT+KQLKPKKKNQK+QREPRFAFMTKS++D+LDDGYRWRKYGQKAVKNSP+PRSYYRC
Sbjct: 161 PEKTQKQLKPKKKNQKRQREPRFAFMTKSEVDNLDDGYRWRKYGQKAVKNSPYPRSYYRC 220

Query: 219 TSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPRGSIGIMANDHNSTATFGASSS- 277
           T+AGCGVKKRVERSS+DP+ VVTTYEGQH HPSPITPRG++GI    H ST    A+ + 
Sbjct: 221 TTAGCGVKKRVERSSDDPSTVVTTYEGQHTHPSPITPRGTMGIAPLPHQSTGFISAAEAS 280

Query: 278 ---FVIPQPQYLQLHHQQQPYIYSSSPPLNLITSNATSTTANSSFNNPTF--SSFVHHHQ 332
              F + Q      H+QQQ     +    +  + N +S+T         F  SSF     
Sbjct: 281 SNPFGVQQFLPHHHHYQQQQQQQYAYMYQSSPSLNISSSTYGGGAGGGPFNPSSFSTSLL 340

Query: 333 AERRNTMISPSQAS--LFHDHGLLQDIVPSQMRNEPKDE 369
            ER N    PS ++     DHGLLQDIVP Q+R EPK+E
Sbjct: 341 QERYNFEGPPSSSATNFLRDHGLLQDIVP-QIRKEPKEE 378

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548389|ref|XP_002515251.1| WRKY transcription factor, putative [Ricinus communis] gi|223545731|gb|EEF47235.1| WRKY transcription factor, putative [Ricinus communis]

 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 167/347 (48%), Positives = 204/347 (58%), Gaps = 65/347 (18%)

Query: 25  GGYGLGGIFDMSCEGDKWDAASFGFMDLLNVQNHNTNYNNQDFGGDSFLFSNTLHPPPPA 84
           G Y L  +FD    GDK   +S GF++LL VQ         DF   S    +TL  P   
Sbjct: 30  GSYPLQSVFDNFYGGDK---SSLGFLELLGVQ---------DFTSPSVF--DTLQLP--- 72

Query: 85  AAPILPPPPPQPSPAP-----ESSEVLNNPATPNSSSISSSSNEAAANNTNNEEQTDTNN 139
           +  +  PP    SPA      ES EV N PATPNSSSISS+S+EA               
Sbjct: 73  STTMQQPPATNNSPAVVVTKMESPEVFNQPATPNSSSISSASSEAL-------------- 118

Query: 140 NNNNNNNSSSKAGDDDEQEQDKTKKQLKPKKKNQKKQREPRFAFMTKSDIDHLDDGYRWR 199
               N+ +  KA D++E+EQ KTKK+LKPKK N K+QREPRFAFMTKS++DHL+DGYRWR
Sbjct: 119 ----NDEAPIKAVDNEEEEQQKTKKELKPKKTNHKRQREPRFAFMTKSEVDHLEDGYRWR 174

Query: 200 KYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPRGSI 259
           KYGQKAVKNSP PRSYYRCT+A C VKKRVERS  DP+IVVTTYEGQH HPSP+ PR S 
Sbjct: 175 KYGQKAVKNSPFPRSYYRCTTASCNVKKRVERSFSDPSIVVTTYEGQHTHPSPVMPRPSF 234

Query: 260 GIMANDHNSTATFGASSSFVIPQPQYLQLHHQ-QQPYIYSSSPPLNLITSNATSTTANSS 318
              A++   +AT     +F +P  + L L+ Q QQP+  S SP                 
Sbjct: 235 VGAASESGFSAT-----NFAMPMQRRLSLYQQPQQPFFNSFSP-------------LGFG 276

Query: 319 FNNPTFSSFVHHHQAERRNTMISPSQASLFHDHGLLQDIVPSQMRNE 365
           +N+ T +S +H    E+R    +   A+L  DHGLLQDIVPS M  E
Sbjct: 277 YNSTTNASLLH----EKR--FCTAPGAALLEDHGLLQDIVPSHMLKE 317

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519913|ref|XP_003528613.1| PREDICTED: probable WRKY transcription factor 48-like [Glycine max]

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 187/402 (46%), Positives = 232/402 (57%), Gaps = 45/402 (11%)

Query: 2   EKREAE----TSISMANSTLLSDENPAGGY--------GLGGIFDMSCEG------DKWD 43
           EKRE E    +S +MANS   SDE P                IFDM          D   
Sbjct: 3   EKREKEGNSKSSSTMANSVAFSDEIPNMSMSTSFPFSPAFSSIFDMMPPPPPSSSHDPKA 62

Query: 44  AASF-GFMDLLNVQNHNTNYNNQDFGGDSFL-----FSNTLHPPPPAAAPILPPPPPQPS 97
             +F GFMDLL V          D+   S        + T  PPP  A    P P P  S
Sbjct: 63  PNNFAGFMDLLAVP--------ADYYAPSLFDWPQNTTATSAPPPLTAQINHPLPSPASS 114

Query: 98  PAPESSEVLNNPATPNSSSISSSSNEAAANNTNNEEQTDTNNNNNNNNNSSSKAGDDDEQ 157
             P+ SEVLN PA+PN SSISSSSNEAAA    N+   + N+ ++     ++    +++Q
Sbjct: 115 NVPDGSEVLNTPASPNYSSISSSSNEAAAAAAANKATGNDNDVDDETTIDAAAGRGEEDQ 174

Query: 158 EQDKTKKQLKPKKKNQKKQREPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPHPRSYYR 217
           +QDKTKKQLKPKKKNQKKQREPRFAFMTKS++DHLDDGYRWRKYGQKAVKNSPHPRSYYR
Sbjct: 175 DQDKTKKQLKPKKKNQKKQREPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPHPRSYYR 234

Query: 218 CTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPRGSIGIMANDHNSTATFG---- 273
           CT+A CGVKKRVERSSEDPT+VVTTYEGQH HP P T R S+G M ++  ++  FG    
Sbjct: 235 CTTATCGVKKRVERSSEDPTVVVTTYEGQHTHPCPATSRASLGFMHSE--ASGGFGPTSG 292

Query: 274 -ASSSFVIP---QPQYLQLHHQQQPYIYSSSPPLNLITSNATSTTANSSFNNPTFSSFVH 329
             S+ F++P   Q +             SSS  L L   N+ S   NS  N  + S F+ 
Sbjct: 293 LGSAHFMLPQQQQFRDQAQAAMLLYNSNSSSLSLPLNVVNSASCVNNSYPNTSSLSGFLQ 352

Query: 330 HHQAERRNTMISPSQASLFHDHGLLQDIVPSQMRNEPKDEHI 371
             +  +R+ +   +  +   D+GLLQDIVP+ MRNE  ++ +
Sbjct: 353 GQENHQRSVL---APHAFLRDNGLLQDIVPTHMRNEESEDRV 391

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	371
TAIR|locus:2157829	399	WRKY48 "WRKY DNA-binding prote	0.269	0.250	0.752	3.1e-50
TAIR|locus:2065124	337	WRKY23 "WRKY DNA-binding prote	0.215	0.237	0.787	1.7e-39
TAIR|locus:2007081	287	WRKY57 "AT1G69310" [Arabidopsi	0.250	0.324	0.715	3.1e-37
TAIR|locus:2019382	282	WRKY71 "WRKY DNA-binding prote	0.223	0.294	0.759	1.3e-36
TAIR|locus:2141872	318	WRKY28 "WRKY DNA-binding prote	0.221	0.257	0.768	2.4e-35
TAIR|locus:2170403	326	WRKY8 "WRKY DNA-binding protei	0.256	0.291	0.639	1.8e-32
TAIR|locus:2096019	277	WRKY68 [Arabidopsis thaliana (	0.202	0.270	0.666	3.4e-32
TAIR|locus:505006317	218	WRKY12 "WRKY DNA-binding prote	0.202	0.344	0.75	2.8e-27
TAIR|locus:2122496	304	WRKY13 "WRKY DNA-binding prote	0.202	0.246	0.710	4.5e-27
TAIR|locus:2133852	557	WRKY20 [Arabidopsis thaliana (	0.221	0.147	0.597	1.2e-25

TAIR|locus:2157829 WRKY48 "WRKY DNA-binding protein 48" [Arabidopsis thaliana (taxid:3702)]

 Score = 423 (154.0 bits), Expect = 3.1e-50, Sum P(3) = 3.1e-50
 Identities = 79/105 (75%), Positives = 91/105 (86%)

Query:   177 REPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDP 236
             RE RFAF+TKSDID+LDDGYRWRKYGQKAVKNSP+PRSYYRCT+ GCGVKKRVERSS+DP
Sbjct:   205 REARFAFLTKSDIDNLDDGYRWRKYGQKAVKNSPYPRSYYRCTTVGCGVKKRVERSSDDP 264

Query:   237 TIVVTTYEGQHIHPSPITPRGSIGIMAN---DHNSTATFGASSSF 278
             +IV+TTYEGQH HP P+TPRG IG++ +   DH   AT  +SSSF
Sbjct:   265 SIVMTTYEGQHTHPFPMTPRGHIGMLTSPILDHG--ATTASSSSF 307

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0003677 "DNA binding" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2065124 WRKY23 "WRKY DNA-binding protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 1.7e-39, Sum P(3) = 1.7e-39
 Identities = 63/80 (78%), Positives = 69/80 (86%)

Query:   177 REPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDP 236
             RE R AFMTKS++DHL+DGYRWRKYGQKAVKNSP PRSYYRCT+A C VKKRVERS  DP
Sbjct:   158 REARVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTASCNVKKRVERSFRDP 217

Query:   237 TIVVTTYEGQHIHPSPITPR 256
             + VVTTYEGQH H SP+T R
Sbjct:   218 STVVTTYEGQHTHISPLTSR 237

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP

TAIR|locus:2007081 WRKY57 "AT1G69310" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
 Identities = 68/95 (71%), Positives = 82/95 (86%)

Query:   177 REPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDP 236
             R+PRFAFMTKSD+D+L+DGYRWRKYGQKAVKNSP PRSYYRCT++ C VKKRVERSS+DP
Sbjct:   131 RQPRFAFMTKSDVDNLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSRCTVKKRVERSSDDP 190

Query:   237 TIVVTTYEGQHIHPSPITPRGSIGIMAND-HNSTA 270
             +IV+TTYEGQH H +   PRG I + A+D H+ T+
Sbjct:   191 SIVITTYEGQHCHQTIGFPRGGI-LTAHDPHSFTS 224

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

TAIR|locus:2019382 WRKY71 "WRKY DNA-binding protein 71" [Arabidopsis thaliana (taxid:3702)]

 Score = 354 (129.7 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
 Identities = 63/83 (75%), Positives = 73/83 (87%)

Query:   177 REPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDP 236
             RE R AFMTKS+IDHL+DGYRWRKYGQKAVKNSP+PRSYYRCT+  C VKKRVERS +DP
Sbjct:   120 REVRVAFMTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDP 179

Query:   237 TIVVTTYEGQHIHPSPITPRGSI 259
             +IV+TTYEG+H HP P T RG++
Sbjct:   180 SIVITTYEGKHNHPIPSTLRGTV 202

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2141872 WRKY28 "WRKY DNA-binding protein 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 2.4e-35, Sum P(2) = 2.4e-35
 Identities = 63/82 (76%), Positives = 72/82 (87%)

Query:   177 REPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDP 236
             REPR +FMTKS++DHL+DGYRWRKYGQKAVKNSP+PRSYYRCT+  C VKKRVERS +DP
Sbjct:   156 REPRVSFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDP 215

Query:   237 TIVVTTYEGQHIHPSPITPRGS 258
             T+V+TTYEGQH HP P   RGS
Sbjct:   216 TVVITTYEGQHNHPIPTNLRGS 237

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2170403 WRKY8 "WRKY DNA-binding protein 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 62/97 (63%), Positives = 80/97 (82%)

Query:   177 REPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDP 236
             +EPR +FMTK+++DHL+DGYRWRKYGQKAVKNSP+PRSYYRCT+  C VKKRVERS +DP
Sbjct:   167 KEPRVSFMTKTEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSYQDP 226

Query:   237 TIVVTTYEGQHIHPSPITPRGSI--GIMANDHNSTAT 271
             T+V+TTYE QH HP P   R ++  G  A+D+N +++
Sbjct:   227 TVVITTYESQHNHPIPTNRRTAMFSGTTASDYNPSSS 263

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0070301 "cellular response to hydrogen peroxide" evidence=IEP

TAIR|locus:2096019 WRKY68 [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 3.4e-32, Sum P(2) = 3.4e-32
 Identities = 50/75 (66%), Positives = 63/75 (84%)

Query:   179 PRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTI 238
             P+ +F+T+S++ HLDDGY+WRKYGQK VK+SP PR+YYRCT+  C VKKRVERS  DP+ 
Sbjct:   104 PKVSFITRSEVLHLDDGYKWRKYGQKPVKDSPFPRNYYRCTTTWCDVKKRVERSFSDPSS 163

Query:   239 VVTTYEGQHIHPSPI 253
             V+TTYEGQH HP P+
Sbjct:   164 VITTYEGQHTHPRPL 178

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:505006317 WRKY12 "WRKY DNA-binding protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 57/76 (75%), Positives = 62/76 (81%)

Query:   177 REPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDP 236
             REPRF F TKSD+D LDDGY+WRKYGQK VKNS HPRSYYRCT   C VKKRVER SED 
Sbjct:   129 REPRFCFQTKSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDC 188

Query:   237 TIVVTTYEGQHIH-PS 251
              +V+TTYEG+H H PS
Sbjct:   189 RMVITTYEGRHNHIPS 204

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

TAIR|locus:2122496 WRKY13 "WRKY DNA-binding protein 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 54/76 (71%), Positives = 63/76 (82%)

Query:   177 REPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDP 236
             REPRF F T S++D LDDGYRWRKYGQK VKN+ HPRSYYRCT   C VKKRVER ++DP
Sbjct:   207 REPRFCFKTLSEVDVLDDGYRWRKYGQKVVKNTQHPRSYYRCTQDKCRVKKRVERLADDP 266

Query:   237 TIVVTTYEGQHIH-PS 251
              +V+TTYEG+H+H PS
Sbjct:   267 RMVITTYEGRHLHSPS 282

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2133852 WRKY20 [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 1.2e-25, Sum P(2) = 1.2e-25
 Identities = 49/82 (59%), Positives = 61/82 (74%)

Query:   177 REPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDP 236
             REPR    T S++D LDDGYRWRKYGQK V+ +P+PRSYY+CT+ GC V+K VER+S DP
Sbjct:   365 REPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTAHGCPVRKHVERASHDP 424

Query:   237 TIVVTTYEGQHIHPSPITPRGS 258
               V+TTYEG+H H  P +   S
Sbjct:   425 KAVITTYEGKHDHDVPTSKSSS 446

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0009961 "response to 1-aminocyclopropane-1-carboxylic acid" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FGZ4	WRK48_ARATH	No assigned EC number	0.5090	0.6657	0.6190	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_X1328 hypothetical protein (290 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	371
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	7e-38
smart00774	59	smart00774, WRKY, DNA binding domain	2e-36
PLN02983	274	PLN02983, PLN02983, biotin carboxyl carrier protei	2e-04
PTZ00441	576	PTZ00441, PTZ00441, sporozoite surface protein 2 (	7e-04
PRK13914	481	PRK13914, PRK13914, invasion associated secreted e	0.004

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  130 bits (328), Expect = 7e-38
 Identities = 46/60 (76%), Positives = 49/60 (81%)

Query: 192 LDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPS 251
           LDDGY WRKYGQK VK SP PRSYYRCTS GC VKK+VERSS+DP IV  TYEG+H HP 
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPRSYYRCTSPGCPVKKQVERSSDDPQIVEITYEGEHNHPK 60

Length = 60

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  126 bits (318), Expect = 2e-36
 Identities = 39/59 (66%), Positives = 48/59 (81%), Gaps = 1/59 (1%)

Query: 192 LDDGYRWRKYGQKAVKNSPHPRSYYRCTSA-GCGVKKRVERSSEDPTIVVTTYEGQHIH 249
           LDDGY+WRKYGQK +K SP+PRSYYRCT   GC  KK+V+RS +DP++V  TYEG+H H
Sbjct: 1   LDDGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 17/45 (37%), Positives = 23/45 (51%)

Query: 77  TLHPPPPAAAPILPPPPPQPSPAPESSEVLNNPATPNSSSISSSS 121
            + PPPP A P   PP  QP+P+  +S     PA+P  +    SS
Sbjct: 152 MMQPPPPHAMPPASPPAAQPAPSAPASSPPPTPASPPPAKAPKSS 196

Length = 274

>gnl|CDD|240420 PTZ00441, PTZ00441, sporozoite surface protein 2 (SSP2); Provisional

 Score = 41.1 bits (96), Expect = 7e-04
 Identities = 28/132 (21%), Positives = 44/132 (33%), Gaps = 11/132 (8%)

Query: 59  NTNYNNQDFGGDSFLFSNTLHPPPPAAAP----------ILPPPPPQPSPAPESSEVLNN 108
           N N  N    GD  +   +  PP P   P          +  PP P     PE    +  
Sbjct: 340 NPNEENLFPPGDDEVPDESNVPPNPPNVPGGSNSEFSSDVENPPNPPNPDIPEQEPNIPE 399

Query: 109 PATPNSSSISSSSNEAAANNTNNEEQTDTNNNNNNNNNSSSKAGDDDEQEQDKTKKQLKP 168
            +            E   +N  NE +   N  +  N     K  D++  + +K  KQ+ P
Sbjct: 400 DSNKEVPEDVPMEPEDDRDNNFNEPKKPENKGDGQNEPVIPKPLDNERDQSNK-NKQVNP 458

Query: 169 KKKNQKKQREPR 180
             ++  + R  R
Sbjct: 459 GNRHNSEDRYTR 470

Length = 576

>gnl|CDD|237555 PRK13914, PRK13914, invasion associated secreted endopeptidase; Provisional

 Score = 39.0 bits (90), Expect = 0.004
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 90  PPPPPQPSPAPESSEVLNNPATPNSSSISSSSNEAAANNTNNEEQTDTNNNN---NNNNN 146
           P P P  +     +    N  T N+++ + S N     N+N    ++TN N    NNN+N
Sbjct: 304 PAPAPSTNTNANKTNTNTNTNTNNTNTSTPSKNTNTNTNSNTNTNSNTNANQGSSNNNSN 363

Query: 147 SSSKA 151
           SS+ A
Sbjct: 364 SSASA 368

Length = 481

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	371
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.96
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.96
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	87.87

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.96  E-value=5.6e-31  Score=201.48  Aligned_cols=59  Identities=71%  Similarity=1.356  Sum_probs=52.6

Q ss_pred             CCCcchhhccCcccccCCCCCccccccccCCCcccchhhhccCCCCEEEEEEecccCCC
Q 017479          192 LDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHP  250 (371)
Q Consensus       192 ldDGY~WRKYGQK~IKgsp~pRsYYRCt~~gC~AkKqVQRs~dDp~i~~tTY~G~HtH~  250 (371)
                      ++|||+|||||||.|+|+++||+||||++.+|+|+|+|||+.+|+.+++|||+|+|||+
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~   59 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHP   59 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred             CCCCCchhhccCcccCCCceeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence            58999999999999999999999999999999999999999999999999999999997

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>smart00774 WRKY DNA binding domain

Probab=99.96  E-value=9.1e-30  Score=195.19  Aligned_cols=58  Identities=67%  Similarity=1.300  Sum_probs=56.6

Q ss_pred             CCCcchhhccCcccccCCCCCcccccccc-CCCcccchhhhccCCCCEEEEEEecccCC
Q 017479          192 LDDGYRWRKYGQKAVKNSPHPRSYYRCTS-AGCGVKKRVERSSEDPTIVVTTYEGQHIH  249 (371)
Q Consensus       192 ldDGY~WRKYGQK~IKgsp~pRsYYRCt~-~gC~AkKqVQRs~dDp~i~~tTY~G~HtH  249 (371)
                      ++|||+|||||||.|+|+++||+||||++ ++|+|+|+|||+.+||.+++|||+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            47999999999999999999999999999 99999999999999999999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=87.87  E-value=0.22  Score=35.95  Aligned_cols=47  Identities=30%  Similarity=0.648  Sum_probs=23.4

Q ss_pred             CCcchhhccCcccccCCCCCccccccccC---CCcccchhhhccCCCCEEEEEEecccCC
Q 017479          193 DDGYRWRKYGQKAVKNSPHPRSYYRCTSA---GCGVKKRVERSSEDPTIVVTTYEGQHIH  249 (371)
Q Consensus       193 dDGY~WRKYGQK~IKgsp~pRsYYRCt~~---gC~AkKqVQRs~dDp~i~~tTY~G~HtH  249 (371)
                      -|||.-+++...      ..+.|+||+..   +|+|+=.+.  .++ . .++...++|||
T Consensus        13 ~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~~~-~-~~~~~~~~HnH   62 (62)
T PF04500_consen   13 YDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--AGD-G-RVVRTNGEHNH   62 (62)
T ss_dssp             ETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE----T-T-EEEE-S---SS
T ss_pred             ECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--CCC-C-EEEECCCccCC
Confidence            578886665444      34589999973   899987777  222 3 33344499998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	371
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		3e-23
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		2e-21

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score =  105 bits (263), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 46/68 (67%), Positives = 56/68 (82%)
Query: 185 TKSDIDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYE 244
           T S++D LDDGYRWRKYGQK VK +P+PRSYY+CT+ GCGV+K VER++ DP  VVTTYE
Sbjct: 10  TTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYE 69
Query: 245 GQHIHPSP 252
           G+H H  P
Sbjct: 70  GKHNHDLP 77

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 45/73 (61%), Positives = 56/73 (76%)
Query: 180 RFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIV 239
           R    T++  D ++DGYRWRKYGQK+VK SP+PRSYYRC+S GC VKK VERSS D  ++
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61
Query: 240 VTTYEGQHIHPSP 252
           +TTYEG+H H  P
Sbjct: 62  ITTYEGKHDHDMP 74
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	371
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	7e-49
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	2e-45
1b6a_A	478	Methionine aminopeptidase; angiogenesis inhibitor;	4e-04

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score =  158 bits (401), Expect = 7e-49
 Identities = 46/76 (60%), Positives = 56/76 (73%)

Query: 177 REPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDP 236
                   T S++D LDDGYRWRKYGQK VK +P+PRSYY+CT+ GCGV+K VER++ DP
Sbjct: 2   SSGSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDP 61

Query: 237 TIVVTTYEGQHIHPSP 252
             VVTTYEG+H H  P
Sbjct: 62  KAVVTTYEGKHNHDLP 77

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  149 bits (378), Expect = 2e-45
 Identities = 45/73 (61%), Positives = 56/73 (76%)

Query: 180 RFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIV 239
           R    T++  D ++DGYRWRKYGQK+VK SP+PRSYYRC+S GC VKK VERSS D  ++
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61

Query: 240 VTTYEGQHIHPSP 252
           +TTYEG+H H  P
Sbjct: 62  ITTYEGKHDHDMP 74

>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A {Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A* 1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A* 1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A* 2ga2_A* 2oaz_A* Length = 478

 Score = 41.1 bits (96), Expect = 4e-04
 Identities = 16/87 (18%), Positives = 30/87 (34%)

Query: 93  PPQPSPAPESSEVLNNPATPNSSSISSSSNEAAANNTNNEEQTDTNNNNNNNNNSSSKAG 152
                 A +          P+++       E+ A+      Q + +   +   +   + G
Sbjct: 29  STAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDG 88

Query: 153 DDDEQEQDKTKKQLKPKKKNQKKQREP 179
           D D       KK+ K KK+  K Q +P
Sbjct: 89  DGDGDGATGKKKKKKKKKRGPKVQTDP 115

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	371
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	100.0
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	100.0

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=100.00  E-value=2.7e-34  Score=228.70  Aligned_cols=75  Identities=60%  Similarity=1.056  Sum_probs=72.5

Q ss_pred             ceeEEEeccccCCCCCcchhhccCcccccCCCCCccccccccCCCcccchhhhccCCCCEEEEEEecccCCCCCC
Q 017479          179 PRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPI  253 (371)
Q Consensus       179 ~r~~~~T~sevd~ldDGY~WRKYGQK~IKgsp~pRsYYRCt~~gC~AkKqVQRs~dDp~i~~tTY~G~HtH~~P~  253 (371)
                      .|++|.|.++++.++|||+|||||||.|||++|||+||||++++|+|+|+|||+.+||.+++|||+|+|||+.|.
T Consensus         1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A            1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            378999999999999999999999999999999999999999999999999999999999999999999999884

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=100.00  E-value=3.1e-34  Score=229.29  Aligned_cols=75  Identities=61%  Similarity=1.109  Sum_probs=69.4

Q ss_pred             ceeEEEeccccCCCCCcchhhccCcccccCCCCCccccccccCCCcccchhhhccCCCCEEEEEEecccCCCCCC
Q 017479          179 PRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPI  253 (371)
Q Consensus       179 ~r~~~~T~sevd~ldDGY~WRKYGQK~IKgsp~pRsYYRCt~~gC~AkKqVQRs~dDp~i~~tTY~G~HtH~~P~  253 (371)
                      .+++|.|.++++.++|||+|||||||.|||++|||+||||++++|+|+|+|||+.+||.+++|||+|+|||+.|.
T Consensus         4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   78 (78)
T 1wj2_A            4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   78 (78)
T ss_dssp             ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence            478899999999999999999999999999999999999999999999999999999999999999999999884

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	371
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	1e-35

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  122 bits (308), Expect = 1e-35
 Identities = 46/68 (67%), Positives = 56/68 (82%)

Query: 185 TKSDIDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYE 244
           T S++D LDDGYRWRKYGQK VK +P+PRSYY+CT+ GCGV+K VER++ DP  VVTTYE
Sbjct: 3   TTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYE 62

Query: 245 GQHIHPSP 252
           G+H H  P
Sbjct: 63  GKHNHDLP 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	371
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	99.98

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.98  E-value=2.6e-34  Score=224.49  Aligned_cols=70  Identities=66%  Similarity=1.207  Sum_probs=67.2

Q ss_pred             EeccccCCCCCcchhhccCcccccCCCCCccccccccCCCcccchhhhccCCCCEEEEEEecccCCCCCC
Q 017479          184 MTKSDIDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPI  253 (371)
Q Consensus       184 ~T~sevd~ldDGY~WRKYGQK~IKgsp~pRsYYRCt~~gC~AkKqVQRs~dDp~i~~tTY~G~HtH~~P~  253 (371)
                      .|.+++++++|||+|||||||.|+|+++||+||||++++|+|+|+|||+.+||.+++|||+|+|||+.|+
T Consensus         2 ~t~~~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps   71 (71)
T d1wj2a_           2 QTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   71 (71)
T ss_dssp             CCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             ccccccccCCCCcEecccCceeccCCCCceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence            4678999999999999999999999999999999999999999999999999999999999999999884