Citrus Sinensis ID: 017490

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370
Protein Sequence
MHDICSEKRLTWFIIQFHQGDISKMEGMARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGLEFVN
Secondary Structure (PSIPRED)
ccccccccccEEEEEEcccccccccccccccccccccEEEEcccccccHHHHHHHHHcccccEEEcccccccHHHHcccccEEEEccccccHHHHHcccccEEEEEcccccccccHHHHHHcccEEEccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccccEEEEEcccHHHHHHHHHHcccccEEEEEccccccccHHHcccccccccccccccccccccccccHHHHHHcccEEEEcccccHHHcccccHHHHHccccccEEEEccccccccHHHHHHHHHHccEEEEEccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEHHEEEEEEEEcccHHHHHHHHcccccccccEEEEEccccHHHHHHHHHHccEEEEEccccccHHHHHHHHccccEEEEEcccccHHHHHHccccEEEEEcccccccccHHHHHcccEEEEEccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHccccccEcEccccccEEEEEcccHHHHHHHHHHHHcccEEEEEcccccHHHHHHHccEEEEEEccccHHHHHcccEEEcHHHHHHHccEEEEcccccccccccEcccHHHHccccEEEEEcccHHHEcHHHHHHHHHHccEEEEEEccccccccccccHccccccEEEcccccHcHHHHHHHHHHHHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
MHDICSEKRLTWFIIQFHQGdiskmegmarssdknitrvlfcgphfpashnytkeylqnypsiqvdvvpisdvpdVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGvglegvdinaatrcgikvaripgdvtgnaaSCAELTIYLMLGLLRKQNEMRMAIEQKklgvptgetllgKTVFILGFGNIGVELAKRLRPFGVKIiatkrswashsqVSCQSSALAVKNGiiddlvdekgcheDIFEFASKADVVVCCLSlnkqtagivNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECghlgglgidvawtepfdpndpilkfknvlitphvggvtehSYRSMAKVVGDVALqlhagtpltglefvn
Flexible Loop (DISEMBL)
mhdicsekRLTWFIIQFHQGDISKMEGMARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKklgvptgetlLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLhagtpltglefvn
Low Complexity Region (SEG)
MHDICSEKRLTWFIIQFHQGDISKMEGMARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPsiqvdvvpisdvpdviANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGLEFVN
Disordered region (IsUnstruct)
****CSEKRLTWFIIQFHQGDISK*********KNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL****
Disordered Region (DISOPRED)
********RLTWFI************************VLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGLEFV*
Disordered Region (DISEMBL)
MHDICSEKRLTWFIIQFHQGDISKMEGMARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK************SSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGLEFVN
Disordered Region (DISPRO)
MHDICSEKRLTWFIIQFHQGDISKMEGMARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGLE***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHDICSEKRLTWFIIQFHQGDISKMEGMARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGLEFVN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	370	2.2.26 [Sep-21-2011]
A1RYE4	339	Glyoxylate reductase OS=T	yes	no	0.667	0.728	0.316	6e-32
O29445	527	D-3-phosphoglycerate dehy	yes	no	0.718	0.504	0.3	9e-31
P35136	525	D-3-phosphoglycerate dehy	yes	no	0.759	0.535	0.282	2e-28
Q8U3Y2	336	Glyoxylate reductase OS=P	yes	no	0.694	0.764	0.292	9e-28
B6YWH0	334	Glyoxylate reductase OS=T	yes	no	0.7	0.775	0.296	3e-27
Q9YAW4	335	Glyoxylate reductase OS=A	yes	no	0.789	0.871	0.294	5e-27
Q5JEZ2	333	Glyoxylate reductase OS=P	yes	no	0.708	0.786	0.3	7e-26
Q58424	524	D-3-phosphoglycerate dehy	yes	no	0.678	0.479	0.307	9e-26
Q9C4M5	331	Glyoxylate reductase OS=T	N/A	no	0.675	0.755	0.303	2e-25
Q91Z53	328	Glyoxylate reductase/hydr	yes	no	0.694	0.783	0.285	5e-25

>sp|A1RYE4|GYAR_THEPD Glyoxylate reductase OS=Thermofilum pendens (strain Hrk 5) GN=gyaR PE=3 SV=1

 Score =  138 bits (348), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 88/278 (31%), Positives = 138/278 (49%), Gaps = 31/278 (11%)

Query: 82  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 141
           LC++ T ++D+  +  A  +K+I  + VG + +DI  AT+ GI V   PG +T    + A
Sbjct: 52  LCLL-TDKIDAEVMDAAPNLKVISTYSVGFDHIDIPEATKRGIYVTHTPGVLTD---AVA 107

Query: 142 ELTIYLMLGLLRKQNEMRMAIEQKKLGVP------TGETLLGKTVFILGFGNIGVELAKR 195
           E T+ L+L + R+  E    I   +   P      TG  L GKT+ ++G G IGV  AKR
Sbjct: 108 EFTVGLILAVTRRIVEADKIIRTGQWDKPWNPYFLTGPELKGKTIGLVGLGRIGVATAKR 167

Query: 196 LRPFGVKIIA--TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 253
           L  F VKI+    +R W   + +                         D+     K+D+V
Sbjct: 168 LSSFDVKILYYDIERRWDVETVIPNME-------------------FTDLDTLLEKSDIV 208

Query: 254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW 313
              + L K+T  ++N+  L  MKK + L+N ARG ++D EA+   L+ G + G  +DV  
Sbjct: 209 SIHVPLTKETYHLINEERLRKMKKTAYLINTARGPVVDTEALVKALKEGWIAGAALDVFE 268

Query: 314 TEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVG 351
            EP  PN P+ KF NV++ PH+   T  + + MA++  
Sbjct: 269 QEPLPPNHPLTKFDNVVLAPHIASATIEARQRMAELAA 306

Thermofilum pendens (strain Hrk 5) (taxid: 368408)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 6

>sp|O29445|SERA_ARCFU D-3-phosphoglycerate dehydrogenase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=serA PE=3 SV=1

 Score =  134 bits (338), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 150/300 (50%), Gaps = 34/300 (11%)

Query: 70  ISDVPDVIANYHLCVVKTM-RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVAR 128
           I +VP     Y   VV++  ++D+  I  A  +K+I + GVG++ +DINAAT+ GI V  
Sbjct: 36  IREVP----KYEAIVVRSQTKVDAEVIQAAKNLKIIGRAGVGVDNIDINAATQRGIVVVN 91

Query: 129 IPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFIL 183
            PG   GN  S AE  I LML   RK  +   ++     E+KK     G  L GKT  ++
Sbjct: 92  APG---GNTISTAEHAIALMLAAARKIPQADRSVKEGKWERKKF---MGIELRGKTAGVI 145

Query: 184 GFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDI 243
           G G +G E+AKR +   + ++A     +       ++  + VK    D L+         
Sbjct: 146 GLGRVGFEVAKRCKALEMNVLAYDPFVSKE-----RAEQIGVKLVDFDTLL--------- 191

Query: 244 FEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGH 303
               + +DV+   +   K+T G++ K     MK G ++VN ARGG++D  A+   ++ G 
Sbjct: 192 ----ASSDVITVHVPRTKETIGLIGKGQFEKMKDGVIVVNAARGGIVDEAALYEAIKAGK 247

Query: 304 LGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPL 363
           +    +DV   EP  P++P+LK  NV+ TPH+   T  +  ++  ++ +  + +  G P+
Sbjct: 248 VAAAALDVYEKEPPSPDNPLLKLDNVVTTPHIAASTREAQLNVGMIIAEDIVNMAKGLPV 307

Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

>sp|P35136|SERA_BACSU D-3-phosphoglycerate dehydrogenase OS=Bacillus subtilis (strain 168) GN=serA PE=3 SV=3

 Score =  126 bits (317), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 156/311 (50%), Gaps = 30/311 (9%)

Query: 61  PSIQVDVVPI-----SDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGV 114
           P I+ D + I     +D  D +  +   +V++  ++  +  ++   +K++ + GVG++ +
Sbjct: 17  PLIESDFIEIVQKNVADAEDELHTFDALLVRSATKVTEDLFNKMTSLKIVGRAGVGVDNI 76

Query: 115 DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG--VPTG 172
           DI+ AT+ G+ V   P    GN  S AE T  ++  L+R   +  ++++ ++       G
Sbjct: 77  DIDEATKHGVIVINAP---NGNTISTAEHTFAMISSLMRHIPQANISVKSREWNRTAYVG 133

Query: 173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDD 232
             L GKT+ I+G G IG E+A+R R FG+ +         H      +   A K G+   
Sbjct: 134 SELYGKTLGIVGLGRIGSEIAQRARAFGMTV---------HVFDPFLTEERAKKIGV--- 181

Query: 233 LVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDY 292
                   E++ E    AD++     L K+T G++NK  ++  KKG  L+N ARGG++D 
Sbjct: 182 ---NSRTFEEVLE---SADIITVHTPLTKETKGLLNKETIAKTKKGVRLINCARGGIIDE 235

Query: 293 EAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGD 352
            A+   LE GH+ G  +DV   EP   ++ ++    V+ TPH+G  T+ +  ++A  V +
Sbjct: 236 AALLEALENGHVAGAALDVFEVEP-PVDNKLVDHPLVIATPHLGASTKEAQLNVAAQVSE 294

Query: 353 VALQLHAGTPL 363
             LQ   G P+
Sbjct: 295 EVLQFAKGLPV 305

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

>sp|Q8U3Y2|GYAR_PYRFU Glyoxylate reductase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=gyaR PE=3 SV=1

 Score =  124 bits (312), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 146/291 (50%), Gaps = 34/291 (11%)

Query: 70  ISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARI 129
           +  V DV A   L  + + R+D      A +++++  + VG + +D+  ATR GI V   
Sbjct: 40  LEKVKDVDA---LVTMLSERIDQEVFENAPRLRIVANYAVGYDNIDVEEATRRGIYVTNT 96

Query: 130 PGDVTGNAASCAELTIYLMLGLLR---KQNEMRMAIEQKKLGVP------TGETLLGKTV 180
           P DV  NA   A+    L+L   R   K ++   + E K+ G+        G  L GKT+
Sbjct: 97  P-DVLTNA--TADHAFALLLATARHVVKGDKFVRSGEWKRKGIAWHPKWFLGYELYGKTI 153

Query: 181 FILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCH 240
            I+GFG IG  +A+R + F ++I+   R+  S ++    +                   +
Sbjct: 154 GIVGFGRIGQAIARRAKGFNMRILYYSRTRKSQAEKELGAE------------------Y 195

Query: 241 EDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE 300
             + E   ++D V+  + L K+T  ++N+  L  MK  ++LVNIARG ++D +A+   L+
Sbjct: 196 RPLEEVLKESDFVILAVPLTKETMYMINEERLKLMKPTAILVNIARGKVVDTKALIKALK 255

Query: 301 CGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVG 351
            G + G G+DV   EP+  N+ +    NV++TPH+G  T  +  +MA++V 
Sbjct: 256 EGWIAGAGLDVFEEEPYY-NEELFSLDNVVLTPHIGSATFEAREAMAELVA 305

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|B6YWH0|GYAR_THEON Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1) GN=gyaR PE=3 SV=1

 Score =  123 bits (308), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 147/293 (50%), Gaps = 34/293 (11%)

Query: 68  VPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVA 127
           V +  V DV A   L  + + R+D+     A ++K++  + VG + +DI  AT+ G+ + 
Sbjct: 38  VLLEKVRDVDA---LVTMLSERIDAEVFDAAPRLKIVANYAVGYDNIDIEEATKMGVYIT 94

Query: 128 RIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAI---EQKKLGVP------TGETLLGK 178
             P DV  NA   A++   L+L   R+  E    +   E KK GV        G  + G+
Sbjct: 95  NTP-DVLTNA--TADMAWVLLLATARRLIEADKFVRSGEWKKRGVAWHPLMFLGYDVYGR 151

Query: 179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG 238
           T+ I+GFG IG  +A+R + FG++I+   R+     +    +  +      +D+L+ E  
Sbjct: 152 TIGIVGFGRIGQAIARRAKGFGMRILYNSRTRKPEVEKELGAEFMP-----LDELLKE-- 204

Query: 239 CHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHY 298
                      +D VV  + L K+T  ++N+  L  MK  ++LVNIARG ++D EA+   
Sbjct: 205 -----------SDFVVLVVPLTKETYHMINEERLKLMKPTAILVNIARGKVVDTEALVKA 253

Query: 299 LECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVG 351
           L  G + G G+DV   EP+  ++ +    NV++ PH+G  T  +   MA++V 
Sbjct: 254 LREGWIAGAGLDVFEEEPYY-HEELFSLDNVVLAPHIGSATYGAREGMAELVA 305

Thermococcus onnurineus (strain NA1) (taxid: 523850)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9YAW4|GYAR_AERPE Glyoxylate reductase OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=gyaR PE=3 SV=2

 Score =  122 bits (306), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 96/326 (29%), Positives = 151/326 (46%), Gaps = 34/326 (10%)

Query: 36  ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCI 95
           +TR +F       S  Y  E    Y     + + +S   +  A Y L    T R+D + +
Sbjct: 8   VTREVFPEALELLSKYYDVEVWDKYQPPPYETL-LSKAREADALYTLL---TDRIDCDLL 63

Query: 96  SRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQ 155
           S+A +++++ Q  VG + +D+  ATR GI V   PG +T    + AE T  L+L   R+ 
Sbjct: 64  SQAPRLRIVAQMAVGFDNIDVECATRLGIYVTNTPGVLT---EATAEFTWALILAAARRV 120

Query: 156 NEMRMAI---EQKKLG------VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT 206
            E    +   E  +L       +  G  L GKT+ ILG G IG  +A+  + FG++II  
Sbjct: 121 VEADHFVRWGEWWRLRTGWHPMMMLGVELRGKTLGILGMGRIGSRVAEIGKAFGMRIIYH 180

Query: 207 KRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGI 266
            RS                K  I  +L  E    ED+     ++D++   L L  +T  +
Sbjct: 181 SRS---------------RKREIEKELGAEYRSLEDLLR---ESDILSIHLPLTDETRHL 222

Query: 267 VNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKF 326
           + +S L  MKK ++LVN  RG ++D  A+   L  G +    +DV   EP +PN P+  F
Sbjct: 223 IGESELKLMKKTAILVNTGRGAIVDTGALVKALREGWIAAAALDVFEEEPLNPNHPLTAF 282

Query: 327 KNVLITPHVGGVTEHSYRSMAKVVGD 352
           KNV++ PH    T  +   MA +  +
Sbjct: 283 KNVVLAPHAASATRETRLRMAMMAAE 308

Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) (taxid: 272557)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q5JEZ2|GYAR_PYRKO Glyoxylate reductase OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=gyaR PE=3 SV=1

 Score =  118 bits (295), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 144/290 (49%), Gaps = 28/290 (9%)

Query: 68  VPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVA 127
           V +  V DV A   L  + + R+DS     A +++++  + VG + +D+  ATR GI V 
Sbjct: 38  VLLKKVRDVDA---LVTMLSERIDSEVFDAAPRLRIVANYAVGYDNIDVEEATRRGIYVT 94

Query: 128 RIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP------TGETLLGKTVF 181
             P  +T   A  A   +      L + +    + E K+ G+        G  + GKT+ 
Sbjct: 95  NTPDVLTDATADFAWTLLLATARRLIEADHFTRSGEWKRRGIAWHPRWFLGYDVYGKTIG 154

Query: 182 ILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHE 241
           I+GFG IG  +A+R R FG++I+     + S S+       L  +   ++DL+ E     
Sbjct: 155 IVGFGRIGQAVARRARGFGMRIL-----YYSRSRKPEAEKELGAEFRSLEDLLRE----- 204

Query: 242 DIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC 301
                   +D VV  + L K+T  ++N+  L  MKK ++LVNIARG ++D +A+   L+ 
Sbjct: 205 --------SDFVVLAVPLTKETQYMINEERLRLMKKTAILVNIARGKVVDTKALMKALKE 256

Query: 302 GHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVG 351
           G + G G+DV   E    N+ +   KNV++ PH+G  T  +   MA++V 
Sbjct: 257 GWIAGAGLDVY-EEEPYYNEELFSLKNVVLAPHIGSATYGAREGMAELVA 305

Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (taxid: 69014)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q58424|SERA_METJA D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=serA PE=3 SV=1

 Score =  118 bits (295), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 145/283 (51%), Gaps = 32/283 (11%)

Query: 77  IANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTG 135
           I +  + VV++  ++  + I +A ++K+I + GVG++ +D+ AAT  GI V   P     
Sbjct: 39  IKDADVLVVRSGTKVTRDVIEKAEKLKVIGRAGVGVDNIDVEAATEKGIIVVNAP---DA 95

Query: 136 NAASCAELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGV 190
           ++ S AELT+ LML   R   +   ++     ++K+     G  L GKT+ ++G G IG 
Sbjct: 96  SSISVAELTMGLMLAAARNIPQATASLKRGEWDRKRF---KGIELYGKTLGVIGLGRIGQ 152

Query: 191 ELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 250
           ++ KR + FG+ II            S          G+  +LVD      DI E   +A
Sbjct: 153 QVVKRAKAFGMNIIGYDPYIPKEVAESM---------GV--ELVD------DINELCKRA 195

Query: 251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGID 310
           D +   + L  +T  I+ +  ++ MKK +++VN ARGGL+D +A+   L+ G +    +D
Sbjct: 196 DFITLHVPLTPKTRHIIGREQIALMKKNAIIVNCARGGLIDEKALYEALKEGKIRAAALD 255

Query: 311 VAWTEPFDPND-PILKFKNVLITPHVGGVTEHSYRSMAKVVGD 352
           V   EP  P D P+L   NV+ TPH G  TE + ++   +V +
Sbjct: 256 VFEEEP--PKDNPLLTLDNVIGTPHQGASTEEAQKAAGTIVAE 296

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

>sp|Q9C4M5|GYAR_THELI Glyoxylate reductase OS=Thermococcus litoralis GN=gyaR PE=1 SV=1

 Score =  116 bits (291), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 137/277 (49%), Gaps = 27/277 (9%)

Query: 82  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 141
           L  + T ++D   +  A ++K+I Q+ VG + +DI  AT+ GI V   PG +T   A  A
Sbjct: 49  LVTLVTDKVDKELLENAPKLKIIAQYAVGYDNIDIEEATKRGIYVTNTPGVLTDATADLA 108

Query: 142 ELTIYLMLGLLRKQNEMRMAIEQKKLGV---PT---GETLLGKTVFILGFGNIGVELAKR 195
              +  +   + + +    + E KK  V   P    G  L GKT+ I+GFG IG  LAKR
Sbjct: 109 FALLLAVARRIVEADAFVRSGEWKKSEVGWHPLMFLGYGLKGKTLGIVGFGRIGQALAKR 168

Query: 196 LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFE-FASKADVVV 254
            + FG+KII   R+    ++                   +E G     FE    ++D + 
Sbjct: 169 AKGFGMKIIYYSRTRKPEAE-------------------EEIGAEYVDFETLLKESDFIS 209

Query: 255 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWT 314
             + L K+T  ++ +  L  MK  ++L+N +RG ++D  A+   L+ G + G G+DV   
Sbjct: 210 LHVPLTKETYHMIGEKELKLMKPNAILINTSRGAVVDTNALIKALKEGWIAGAGLDVFEE 269

Query: 315 EPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVG 351
           EP+  N+ + K KNV++ PH+G  T  +   MA++V 
Sbjct: 270 EPYY-NEELFKLKNVVLAPHIGSATHEAREGMAELVA 305

Thermococcus litoralis (taxid: 2265)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q91Z53|GRHPR_MOUSE Glyoxylate reductase/hydroxypyruvate reductase OS=Mus musculus GN=Grhpr PE=1 SV=1

 Score =  115 bits (288), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 139/294 (47%), Gaps = 37/294 (12%)

Query: 66  DVVPISDVPDVIANYH--LCVVKTMRLDSNCISRAN-QMKLIMQFGVGLEGVDINAATRC 122
           D +P  D+   +   H  LC +   R+D   +  A   +++I    VG++ + ++   + 
Sbjct: 38  DPIPRKDLEQGVVGAHGLLCRLSD-RVDKKLLDAAGANLRVISTLSVGVDHLALDEIKKR 96

Query: 123 GIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPT--------GET 174
           GI+V   PG +T    + AEL + L+L   R+  E   AIE+ K G  +        G  
Sbjct: 97  GIRVGYTPGVLTD---ATAELAVSLLLTTCRRLPE---AIEEVKNGGWSSWSPLWMCGYG 150

Query: 175 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDL 233
           L   TV I+G G IG  +A+RL+PFGV + + T R          Q+  +          
Sbjct: 151 LSQSTVGIVGLGRIGQAIARRLKPFGVQRFLYTGRQPRPQEAAEFQAEFVP--------- 201

Query: 234 VDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYE 293
                    I + A+++D +V   SL   T G+ +K F   MK  ++ +NI+RG +++ E
Sbjct: 202 ---------IAQLAAESDFIVVSCSLTPDTMGLCSKDFFQKMKNTAIFINISRGDVVNQE 252

Query: 294 AIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMA 347
            +   L  G +   G+DV   EP  P+ P+L  KN +I PH+G  T  +  +M+
Sbjct: 253 DLYQALASGQIAAAGLDVTTPEPLPPSHPLLTLKNCVILPHIGSATYKTRNTMS 306

Enzyme with hydroxy-pyruvate reductase, glyoxylate reductase and D-glycerate dehydrogenase enzymatic activities. Reduces hydroxypyruvate to D-glycerate, glyoxylate to glycolate oxidizes D-glycerate to hydroxypyruvate.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	370
118488445	343	unknown [Populus trichocarpa]	0.927	1.0	0.775	1e-160
224136053	343	predicted protein [Populus trichocarpa]	0.927	1.0	0.772	1e-160
255561522	380	phosphoglycerate dehydrogenase, putative	0.927	0.902	0.758	1e-156
225460279	373	PREDICTED: d-3-phosphoglycerate dehydrog	0.937	0.930	0.720	1e-147
296089431	343	unnamed protein product [Vitis vinifera]	0.927	1.0	0.723	1e-145
359493304	333	PREDICTED: d-3-phosphoglycerate dehydrog	0.9	1.0	0.714	1e-145
449503247	337	PREDICTED: d-3-phosphoglycerate dehydrog	0.910	1.0	0.716	1e-145
357455585	382	D-3-phosphoglycerate dehydrogenase [Medi	0.913	0.884	0.699	1e-144
388510518	344	unknown [Medicago truncatula]	0.913	0.982	0.696	1e-143
363807464	391	uncharacterized protein LOC100785085 [Gl	0.970	0.918	0.662	1e-140

>gi|118488445|gb|ABK96037.1| unknown [Populus trichocarpa]

 Score =  571 bits (1472), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 266/343 (77%), Positives = 308/343 (89%)

Query: 28  MARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT 87
           M  +SDK+ITRVLFCGP+FPASH YTKEYLQ YP IQVD VP++ VPDVI+NY++C+VK 
Sbjct: 1   MVGNSDKHITRVLFCGPYFPASHQYTKEYLQKYPFIQVDDVPLAVVPDVISNYNICIVKN 60

Query: 88  MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 147
           MRL SN ISRA QMKLIMQFGVG+EGVDI+AAT+ GIKVARIPGD TGNAASCAE+ IYL
Sbjct: 61  MRLTSNIISRATQMKLIMQFGVGIEGVDIDAATKYGIKVARIPGDATGNAASCAEMAIYL 120

Query: 148 MLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 207
           MLGLLRKQNEM+++I+QK+LG P GETL GKTVFI+GFGNIG++LAKRLRPFGVKIIATK
Sbjct: 121 MLGLLRKQNEMQISIKQKRLGEPAGETLFGKTVFIMGFGNIGIDLAKRLRPFGVKIIATK 180

Query: 208 RSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIV 267
           RSWA HS+ S QS+   ++NG  D+LVDEKG HEDI++FA ++D+VVCCL +NK+TAGIV
Sbjct: 181 RSWALHSEGSLQSNGFLIENGTNDNLVDEKGSHEDIYKFAGESDIVVCCLRMNKETAGIV 240

Query: 268 NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFK 327
           NKSF+SSMKKGSLLVNIARGGLLDY A+ H+LE GHLGGLGIDVAWTEPFDP+DPILKF 
Sbjct: 241 NKSFISSMKKGSLLVNIARGGLLDYNAVVHHLESGHLGGLGIDVAWTEPFDPDDPILKFN 300

Query: 328 NVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGLEFVN 370
           NV+I+PHV GVTEHSYRSM+KVVGDVALQLH+G PLTG+E VN
Sbjct: 301 NVIISPHVAGVTEHSYRSMSKVVGDVALQLHSGNPLTGIEIVN 343

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136053|ref|XP_002327369.1| predicted protein [Populus trichocarpa] gi|222835739|gb|EEE74174.1| predicted protein [Populus trichocarpa]

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 265/343 (77%), Positives = 309/343 (90%)

Query: 28  MARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT 87
           M  +SDK+ITRVLFCGP+FPASH YTKEYLQ YP IQVD VP++ VPDVI+NY++C+VK 
Sbjct: 1   MVGNSDKHITRVLFCGPYFPASHQYTKEYLQKYPFIQVDDVPLAVVPDVISNYNICIVKN 60

Query: 88  MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 147
           MRL SN ISRA QMKLIMQFGVG+EGVDI+AAT+ GIKVARIPGD TGNAASCAE+ IYL
Sbjct: 61  MRLTSNIISRATQMKLIMQFGVGIEGVDIDAATKYGIKVARIPGDATGNAASCAEMAIYL 120

Query: 148 MLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 207
           MLGLLRKQNEM+++I+QK+LG P GETL GKTVFI+GFGNIG++LAKRLRPFGVKIIATK
Sbjct: 121 MLGLLRKQNEMQISIKQKRLGEPAGETLFGKTVFIMGFGNIGIDLAKRLRPFGVKIIATK 180

Query: 208 RSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIV 267
           RSWA HS+ S QS+   ++NG  D+LVDEKG HEDI++FA ++D+VVCCL +NK+TAGIV
Sbjct: 181 RSWALHSEGSLQSNGFLIENGTNDNLVDEKGSHEDIYKFAGESDIVVCCLRMNKETAGIV 240

Query: 268 NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFK 327
           NKSF+SSMKKGSLLVNIARGGLL+Y+A+ H+LE GHLGGLGIDVAWTEPFDP+DPILKF 
Sbjct: 241 NKSFISSMKKGSLLVNIARGGLLEYDAVVHHLESGHLGGLGIDVAWTEPFDPDDPILKFN 300

Query: 328 NVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGLEFVN 370
           NV+I+PHV GVTEHSYRSM+KVVGDVALQLH+G PLTG+E VN
Sbjct: 301 NVIISPHVAGVTEHSYRSMSKVVGDVALQLHSGNPLTGIEIVN 343

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561522|ref|XP_002521771.1| phosphoglycerate dehydrogenase, putative [Ricinus communis] gi|223538984|gb|EEF40581.1| phosphoglycerate dehydrogenase, putative [Ricinus communis]

 Score =  556 bits (1432), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 260/343 (75%), Positives = 301/343 (87%)

Query: 28  MARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT 87
           MA  +   ITRVLFCGPHFPASH YTK+YLQ YP IQVD VP++DVP+VIANYH+CV KT
Sbjct: 38  MAGDNSNYITRVLFCGPHFPASHIYTKQYLQKYPFIQVDDVPLNDVPNVIANYHICVSKT 97

Query: 88  MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 147
            R+DS+ ISRA QMKLIMQFGVGLEG++I+AA+RCGIKVARIPGD TGNAASCAE+ IYL
Sbjct: 98  TRIDSSIISRATQMKLIMQFGVGLEGINIDAASRCGIKVARIPGDFTGNAASCAEMAIYL 157

Query: 148 MLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 207
           MLGLLRKQN+M+++I+QKKLG P GETLLGKTVFILG+GNIG+ELAKRL+PFGVK+IATK
Sbjct: 158 MLGLLRKQNQMQVSIKQKKLGEPIGETLLGKTVFILGYGNIGIELAKRLQPFGVKVIATK 217

Query: 208 RSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIV 267
           R W S+  V  Q   L ++NG IDDLVD+KG HEDI EFAS AD++VCCL +NK TAGIV
Sbjct: 218 RKWTSNLHVLHQQKGLPMQNGSIDDLVDKKGSHEDIHEFASNADIIVCCLHMNKDTAGIV 277

Query: 268 NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFK 327
           NKSF+SSM+KG+LL+N+ARGGLLDY+A+  +L  GHLGGLGIDVAWTEPFDP+DPILKF 
Sbjct: 278 NKSFISSMRKGALLINVARGGLLDYDAVMQHLNSGHLGGLGIDVAWTEPFDPDDPILKFD 337

Query: 328 NVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGLEFVN 370
           NVLITPHV GVTEHSYRSMAKVVGDVALQ+HAG P +G+E VN
Sbjct: 338 NVLITPHVAGVTEHSYRSMAKVVGDVALQIHAGAPCSGIEIVN 380

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460279|ref|XP_002282092.1| PREDICTED: d-3-phosphoglycerate dehydrogenase-like isoform 1 [Vitis vinifera]

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 250/347 (72%), Positives = 297/347 (85%)

Query: 24  KMEGMARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLC 83
           K+E M + S+  ITR+LFCGP+FPAS+ YT+EYLQNYP IQVD     DVPDVIA+Y +C
Sbjct: 27  KIEKMVKDSNGCITRLLFCGPNFPASNKYTREYLQNYPFIQVDDSSFEDVPDVIADYDMC 86

Query: 84  VVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAEL 143
           +VK+MRLDSN ISRAN+MKLIMQFGVGLEGVDINAAT+CGIKVARI    TGNAASCAE+
Sbjct: 87  IVKSMRLDSNIISRANKMKLIMQFGVGLEGVDINAATKCGIKVARIASGETGNAASCAEM 146

Query: 144 TIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKI 203
            IYLMLGLLRKQ EM+++++QK +G P G+TL GKTVFI+GFGNIG++LAKRLRPFGV+I
Sbjct: 147 AIYLMLGLLRKQKEMQISLKQKIVGEPIGDTLFGKTVFIMGFGNIGIDLAKRLRPFGVRI 206

Query: 204 IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQT 263
           +ATKRSWAS S  S QS+     N   D+LVDEKG HE I++FAS AD+VVCCL LN +T
Sbjct: 207 LATKRSWASQSLNSSQSNGFPTPNDNADELVDEKGGHEAIYDFASSADIVVCCLRLNSET 266

Query: 264 AGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPI 323
           A I++K F+SSM+KG LL+NIARGGL+DYEA+A++LE GHLGGLG DV WTEPF+P+D I
Sbjct: 267 AAIIDKKFISSMRKGGLLINIARGGLMDYEAVAYHLESGHLGGLGTDVTWTEPFNPDDQI 326

Query: 324 LKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGLEFVN 370
           LKF+NV++TPHV GVTEHSYRSMAKVVGD+ALQLHAG PLTGLEFVN
Sbjct: 327 LKFQNVIVTPHVAGVTEHSYRSMAKVVGDIALQLHAGAPLTGLEFVN 373

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089431|emb|CBI39250.3| unnamed protein product [Vitis vinifera]

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 248/343 (72%), Positives = 294/343 (85%)

Query: 28  MARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT 87
           M + S+  ITR+LFCGP+FPAS+ YT+EYLQNYP IQVD     DVPDVIA+Y +C+VK+
Sbjct: 1   MVKDSNGCITRLLFCGPNFPASNKYTREYLQNYPFIQVDDSSFEDVPDVIADYDMCIVKS 60

Query: 88  MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 147
           MRLDSN ISRAN+MKLIMQFGVGLEGVDINAAT+CGIKVARI    TGNAASCAE+ IYL
Sbjct: 61  MRLDSNIISRANKMKLIMQFGVGLEGVDINAATKCGIKVARIASGETGNAASCAEMAIYL 120

Query: 148 MLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 207
           MLGLLRKQ EM+++++QK +G P G+TL GKTVFI+GFGNIG++LAKRLRPFGV+I+ATK
Sbjct: 121 MLGLLRKQKEMQISLKQKIVGEPIGDTLFGKTVFIMGFGNIGIDLAKRLRPFGVRILATK 180

Query: 208 RSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIV 267
           RSWAS S  S QS+     N   D+LVDEKG HE I++FAS AD+VVCCL LN +TA I+
Sbjct: 181 RSWASQSLNSSQSNGFPTPNDNADELVDEKGGHEAIYDFASSADIVVCCLRLNSETAAII 240

Query: 268 NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFK 327
           +K F+SSM+KG LL+NIARGGL+DYEA+A++LE GHLGGLG DV WTEPF+P+D ILKF+
Sbjct: 241 DKKFISSMRKGGLLINIARGGLMDYEAVAYHLESGHLGGLGTDVTWTEPFNPDDQILKFQ 300

Query: 328 NVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGLEFVN 370
           NV++TPHV GVTEHSYRSMAKVVGD+ALQLHAG PLTGLEFVN
Sbjct: 301 NVIVTPHVAGVTEHSYRSMAKVVGDIALQLHAGAPLTGLEFVN 343

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493304|ref|XP_003634565.1| PREDICTED: d-3-phosphoglycerate dehydrogenase-like isoform 2 [Vitis vinifera]

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 245/343 (71%), Positives = 291/343 (84%), Gaps = 10/343 (2%)

Query: 28  MARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT 87
           M + S+  ITR+LFCGP+FPAS+ YT+EYLQNYP IQVD     DVPDVIA+Y +C+VK+
Sbjct: 1   MVKDSNGCITRLLFCGPNFPASNKYTREYLQNYPFIQVDDSSFEDVPDVIADYDMCIVKS 60

Query: 88  MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 147
           MRLDSN ISRAN+MKLIMQFGVGLEGVDINAAT+CGIKVARI    TGNAASCAE+ IYL
Sbjct: 61  MRLDSNIISRANKMKLIMQFGVGLEGVDINAATKCGIKVARIASGETGNAASCAEMAIYL 120

Query: 148 MLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 207
           MLGLLRKQ EM+++++QK +G P G+TL GKTVFI+GFGNIG++LAKRLRPFGV+I+ATK
Sbjct: 121 MLGLLRKQKEMQISLKQKIVGEPIGDTLFGKTVFIMGFGNIGIDLAKRLRPFGVRILATK 180

Query: 208 RSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIV 267
           RSWAS S          + N   D+LVDEKG HE I++FAS AD+VVCCL LN +TA I+
Sbjct: 181 RSWASQS----------LPNDNADELVDEKGGHEAIYDFASSADIVVCCLRLNSETAAII 230

Query: 268 NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFK 327
           +K F+SSM+KG LL+NIARGGL+DYEA+A++LE GHLGGLG DV WTEPF+P+D ILKF+
Sbjct: 231 DKKFISSMRKGGLLINIARGGLMDYEAVAYHLESGHLGGLGTDVTWTEPFNPDDQILKFQ 290

Query: 328 NVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGLEFVN 370
           NV++TPHV GVTEHSYRSMAKVVGD+ALQLHAG PLTGLEFVN
Sbjct: 291 NVIVTPHVAGVTEHSYRSMAKVVGDIALQLHAGAPLTGLEFVN 333

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449503247|ref|XP_004161907.1| PREDICTED: d-3-phosphoglycerate dehydrogenase-like [Cucumis sativus]

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 248/346 (71%), Positives = 289/346 (83%), Gaps = 9/346 (2%)

Query: 25  MEGMARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCV 84
           ME     S K + RVLFCG  FP+SHNYT EYL NYP +QVD+VP  DVP VI+NYH+CV
Sbjct: 1   MERTHEDSSKGLIRVLFCGSQFPSSHNYTCEYLLNYPFVQVDIVPCEDVPKVISNYHICV 60

Query: 85  VKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELT 144
           VK M+ D + ISRA+QMKLI+QFGVGL+GVD++AAT+ GIKVARIP  VTGNA SCAE+ 
Sbjct: 61  VKMMKFDFDLISRASQMKLIVQFGVGLDGVDVDAATKRGIKVARIPSGVTGNALSCAEMA 120

Query: 145 IYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 204
           IYLMLGLLRKQ EM++A++ K LGVPTG+TLLGKTVFI+GFGNIG+ELAKRLRPFGV+II
Sbjct: 121 IYLMLGLLRKQKEMQIAVDHKMLGVPTGDTLLGKTVFIMGFGNIGLELAKRLRPFGVRII 180

Query: 205 ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTA 264
           ATKRSW  +S         +  NG  +DLVD+KG HEDI +FAS AD+VVCCL LN +T 
Sbjct: 181 ATKRSWTENS---------SQLNGASEDLVDQKGAHEDIQKFASIADIVVCCLCLNSETV 231

Query: 265 GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPIL 324
           G+VNKSFLSSM+KGSLLVN+ARG LLDY++  H LE GHLGGLG+DVAWTEPFDPNDPIL
Sbjct: 232 GVVNKSFLSSMRKGSLLVNVARGRLLDYQSTLHSLESGHLGGLGMDVAWTEPFDPNDPIL 291

Query: 325 KFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGLEFVN 370
           KF NV+ TPHV GVTEHSYRSMAKV+GDVALQ+HAG+PLTG+EFVN
Sbjct: 292 KFNNVICTPHVAGVTEHSYRSMAKVIGDVALQMHAGSPLTGIEFVN 337

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455585|ref|XP_003598073.1| D-3-phosphoglycerate dehydrogenase [Medicago truncatula] gi|355487121|gb|AES68324.1| D-3-phosphoglycerate dehydrogenase [Medicago truncatula]

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 240/343 (69%), Positives = 290/343 (84%), Gaps = 5/343 (1%)

Query: 28  MARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT 87
           M    ++  TRVLFCGP FP SH YT EYLQN+ SI+VDV+P+ ++P  IANYH+CVVK 
Sbjct: 45  MINDVERKTTRVLFCGPQFPCSHLYTTEYLQNHSSIKVDVLPLEEIPKAIANYHVCVVKM 104

Query: 88  MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 147
           M+LDSN ISRA QMKLIMQ+GVGLEGVDI+AAT+ GIKVARIP   TGN+ +CAE+ IYL
Sbjct: 105 MKLDSNIISRAVQMKLIMQYGVGLEGVDIDAATKHGIKVARIPSGGTGNSTACAEMAIYL 164

Query: 148 MLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 207
           MLGLLRKQNEM+++I+Q+KLG P G+TL GKT+FILGFGNIG++LA+RL+PFGVK+IATK
Sbjct: 165 MLGLLRKQNEMQISIQQRKLGEPIGDTLFGKTIFILGFGNIGIDLARRLKPFGVKVIATK 224

Query: 208 RSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIV 267
           RSWAS++Q + +     +    +DDLVD KG HEDI++FA+KAD+V CCL+LN +TAGIV
Sbjct: 225 RSWASYAQNTNE-----LNRNDVDDLVDVKGSHEDIYDFATKADIVACCLNLNSETAGIV 279

Query: 268 NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFK 327
           N +F+SSMKKG+LLVN+ARG LLDYEA+   LE GHLGGLG DVAWTEPFDP+D ILKFK
Sbjct: 280 NNNFISSMKKGALLVNVARGRLLDYEAVVKNLESGHLGGLGTDVAWTEPFDPDDRILKFK 339

Query: 328 NVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGLEFVN 370
           NV++TPH+ GVTEHSYRSMAKVVGDV LQLHAG PLTG+E VN
Sbjct: 340 NVIMTPHIAGVTEHSYRSMAKVVGDVVLQLHAGNPLTGIELVN 382

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510518|gb|AFK43325.1| unknown [Medicago truncatula]

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 239/343 (69%), Positives = 289/343 (84%), Gaps = 5/343 (1%)

Query: 28  MARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT 87
           M    ++  TRVLFCGP FP SH YT EYLQN+ SI+VDV+P+ ++P  IANYH+CVVK 
Sbjct: 7   MINDVERKTTRVLFCGPQFPCSHLYTTEYLQNHSSIKVDVLPLEEIPKAIANYHVCVVKM 66

Query: 88  MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 147
           M+LDSN ISRA QMKLIMQ+GVGLEGVDI+AAT+ GIKVARIP   TGN+ +CAE+ IYL
Sbjct: 67  MKLDSNIISRAVQMKLIMQYGVGLEGVDIDAATKHGIKVARIPSGGTGNSTACAEMAIYL 126

Query: 148 MLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 207
           MLGLLRKQNEM+++I+Q+KLG P G+TL GKT+FILGFGNIG++LA+RL+PFGVK+IATK
Sbjct: 127 MLGLLRKQNEMQISIQQRKLGEPIGDTLFGKTIFILGFGNIGIDLARRLKPFGVKVIATK 186

Query: 208 RSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIV 267
           RSWAS++Q + +     +    +DDLVD KG HEDI++FA+KAD+V CCL+LN +TAGIV
Sbjct: 187 RSWASYAQNTNE-----LNRNDVDDLVDVKGSHEDIYDFATKADIVACCLNLNSETAGIV 241

Query: 268 NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFK 327
           N +F+SSMKKG+LLVN+ARG LLDYEA+   LE GHLGGLG DVAWTEPFDP+D ILKFK
Sbjct: 242 NNNFISSMKKGALLVNVARGRLLDYEAVVKNLESGHLGGLGTDVAWTEPFDPDDRILKFK 301

Query: 328 NVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGLEFVN 370
           NV++TPH+ GVTEHSYRSMAKVVGDV LQLHA  PLTG+E VN
Sbjct: 302 NVIMTPHIAGVTEHSYRSMAKVVGDVVLQLHARNPLTGIELVN 344

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807464|ref|NP_001242647.1| uncharacterized protein LOC100785085 [Glycine max] gi|255645066|gb|ACU23032.1| unknown [Glycine max]

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 245/370 (66%), Positives = 295/370 (79%), Gaps = 11/370 (2%)

Query: 1   MHDICSEKRLTWFIIQFHQGDISKMEGMARSSDKNITRVLFCGPHFPASHNYTKEYLQNY 60
           +H     K L W  +    G+  K       ++K ITRVLFCGP FPASH YT EYLQN+
Sbjct: 33  LHHHLRSKNLHWAGLMESNGNSVK------DAEKQITRVLFCGPRFPASHEYTIEYLQNH 86

Query: 61  PSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAAT 120
             I+VDV+P+ DVP  IANYH+C+VK MRLDS  ISRA QM+LIMQ+GVGLEGVDI+AAT
Sbjct: 87  SHIKVDVLPLEDVPKDIANYHVCIVKNMRLDSEIISRAVQMQLIMQYGVGLEGVDIDAAT 146

Query: 121 RCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTV 180
           + GIKVARIPGDV+GN+ASCAE+ IYLMLGLLRKQNE++++I+QKKLG P  ETLLGKT+
Sbjct: 147 KHGIKVARIPGDVSGNSASCAEMAIYLMLGLLRKQNELQVSIQQKKLGEPITETLLGKTI 206

Query: 181 FILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCH 240
           FILGFGNIG++LAKRL+PFGVK+IA KRSWAS++Q    +S L+  +   +DLVD KG H
Sbjct: 207 FILGFGNIGMDLAKRLQPFGVKVIAIKRSWASYAQ---HASKLSRNDA--EDLVDVKGSH 261

Query: 241 EDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE 300
           EDI+EFA KAD+VVCCL+LN++  GI+N  F+  MKKG LLVN+ARGGL+DYEA+ + LE
Sbjct: 262 EDIYEFARKADIVVCCLTLNREAVGIINNKFIFFMKKGGLLVNVARGGLVDYEAVINPLE 321

Query: 301 CGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAG 360
            GHLGGLG DVAWTEPF+P+D I KFKNV++TPHV GVTEH YR MAK VGDV  QLHAG
Sbjct: 322 SGHLGGLGTDVAWTEPFNPDDQIFKFKNVIMTPHVAGVTEHFYRFMAKAVGDVVFQLHAG 381

Query: 361 TPLTGLEFVN 370
            PLTG+E VN
Sbjct: 382 LPLTGIELVN 391

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	370
TAIR|locus:2207046	373	AT1G72190 [Arabidopsis thalian	0.918	0.911	0.650	4.1e-120
TIGR_CMR|CHY_2698	525	CHY_2698 "D-3-phosphoglycerate	0.332	0.234	0.328	1.3e-27
UNIPROTKB|G3N069	328	LOC515578 "Uncharacterized pro	0.659	0.743	0.299	5.7e-27
UNIPROTKB|F1RZA1	324	LOC100157017 "Uncharacterized	0.659	0.753	0.292	3.6e-25
TAIR|locus:2185500	384	FDH "formate dehydrogenase" [A	0.602	0.580	0.309	8.7e-24
UNIPROTKB|P0A544	528	serA "D-3-phosphoglycerate deh	0.308	0.215	0.367	2.8e-23
TIGR_CMR|CJE_0970	527	CJE_0970 "D-3-phosphoglycerate	0.345	0.242	0.358	5.5e-23
UNIPROTKB|E1BRZ4	272	LOC420808 "Uncharacterized pro	0.681	0.926	0.287	6.1e-23
UNIPROTKB|Q0BWN7	328	gyaR "Glyoxylate reductase" [H	0.659	0.743	0.3	1.6e-22
ZFIN|ZDB-GENE-030131-647	528	phgdh "phosphoglycerate dehydr	0.332	0.232	0.341	1.8e-22

TAIR|locus:2207046 AT1G72190 [Arabidopsis thaliana (taxid:3702)]

 Score = 1182 (421.1 bits), Expect = 4.1e-120, P = 4.1e-120
 Identities = 229/352 (65%), Positives = 276/352 (78%)

Query:    19 QGDISKMEGMARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPXXXXXXXXXXXXXXXXA 78
             Q  + K+E +    D ++TRVLFCGPHFP S+N+T+EYLQ YP                 
Sbjct:    34 QSKVVKIERIVEKEDMHVTRVLFCGPHFPDSYNFTREYLQPYPFIKVDVVHYRDVPEVIK 93

Query:    79 NYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAA 138
             NYH+CV  TM++DSN ISRA+ +KLIMQ+GVGL+GVDI+AAT+ GIKVARIP + TGNAA
Sbjct:    94 NYHICVAMTMQMDSNVISRASNIKLIMQYGVGLDGVDIDAATKHGIKVARIPSEGTGNAA 153

Query:   139 SCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRP 198
             SC+E+ IYLMLGLL+KQNEM++++  + LG PTG+TLLGKTVFILG+GNIG+ELAKRL+P
Sbjct:   154 SCSEMAIYLMLGLLKKQNEMQISLRNRLLGEPTGDTLLGKTVFILGYGNIGIELAKRLKP 213

Query:   199 FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLS 258
             FG ++IATKR W + S V   S            LVDEKG HEDI+ FA KAD+VV CL 
Sbjct:   214 FGSRVIATKRFWPA-SIVDSDSR-----------LVDEKGSHEDIYTFAGKADIVVVCLR 261

Query:   259 LNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFD 318
             LNK+TA IVNK F+ SMKKG+LLVNIARGGL++YE+    LE GHLGGLGIDVAW+EPFD
Sbjct:   262 LNKETAEIVNKEFICSMKKGALLVNIARGGLINYESAFQNLESGHLGGLGIDVAWSEPFD 321

Query:   319 PNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGLEFVN 370
             PNDPILKFKNV+ITPHV GVTE+SYRSMAK+VGD+ALQLH G PLTG+EFVN
Sbjct:   322 PNDPILKFKNVIITPHVAGVTEYSYRSMAKIVGDLALQLHEGLPLTGIEFVN 373

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TIGR_CMR|CHY_2698 CHY_2698 "D-3-phosphoglycerate dehydrogenase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 200 (75.5 bits), Expect = 1.3e-27, Sum P(2) = 1.3e-27
 Identities = 41/125 (32%), Positives = 69/125 (55%)

Query:   245 EFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHL 304
             E    +D+V   L LN +T  ++N+  L  MKK + ++N ARGG++D EA+   L+ G +
Sbjct:   189 ELLQNSDIVTMHLPLNNETRNLINRERLKLMKKSAFIINCARGGIIDEEALYEALKAGEI 248

Query:   305 GGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMA-KVVGDVALQLHAGTPL 363
              G  +DV   EP   + P+ +  NV++TPH+G  T+ +  ++A  V  ++A  L  G   
Sbjct:   249 AGAALDVFSKEPLTES-PLFELPNVIVTPHLGASTKEAQINVAIDVAREIASVLKGGLAQ 307

Query:   364 TGLEF 368
               + F
Sbjct:   308 NAVNF 312

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=ISS

GO:0006564 "L-serine biosynthetic process" evidence=ISS

UNIPROTKB|G3N069 LOC515578 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 80/267 (29%), Positives = 139/267 (52%)

Query:   101 MKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNE-MR 159
             +K++   G GL+ +D+      G+KVA  P  V+   +  A+L + L+L   R+  E  +
Sbjct:    74 LKIVASAGAGLDHLDLGLVASFGVKVANTPHAVS---SPTADLGMALLLAAARRVVEGHQ 130

Query:   160 MAIEQKKLGVPT---GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQV 216
             +A+       PT   G+ + G T+ I+G G+IG ++A+R R F +KI+   R      ++
Sbjct:   131 LAVSPHTENFPTDYMGQQVTGATLGIIGMGSIGYKIAQRARAFEMKIVYHNRK---RRKL 187

Query:   217 SCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMK 276
               + +  A+    +DDL+               +D V+  +SL  QT G++ K  L  MK
Sbjct:   188 EEEEAVGAIYCERLDDLLQW-------------SDFVMLAVSLTPQTQGLIGKRELRLMK 234

Query:   277 KGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVG 336
               ++L+NI RG L+D EA+   L+ G +    +DV + EP   + P+L+ KNV++TPH+G
Sbjct:   235 PTAILINIGRGLLVDQEALVEALQTGLIKAAALDVTYPEPLPRDHPLLELKNVILTPHIG 294

Query:   337 GVTEHSYRSMAKVVGDVALQLHAGTPL 363
               T  + R M + + +  L   +G P+
Sbjct:   295 SATHQARRQMMENLVESILASLSGLPI 321

GO:0051287 "NAD binding" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

UNIPROTKB|F1RZA1 LOC100157017 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 78/267 (29%), Positives = 136/267 (50%)

Query:   101 MKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNE-MR 159
             +++I   GVGL+ +D+      G+KVA  P  V   A   A+L + L+L + R+  E  +
Sbjct:    71 LRVIASSGVGLDHLDLKLIDSFGVKVANTPHAV---ANPTADLGMALLLAVARRVVEGHQ 127

Query:   160 MAIEQKKLGVPT---GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQV 216
             +AI            GE + G T+ I+G G+IG ++A+R R F +KI+   R   S  + 
Sbjct:   128 LAISPHTENFSANWLGEEVTGATLGIIGMGSIGYKIAQRARAFEMKILYHNRKRRSLEEE 187

Query:   217 SCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMK 276
                 +    +   +DDL+ +             +D V+  ++L  Q+ G++ +  LS MK
Sbjct:   188 EAVGATYCER---LDDLLQQ-------------SDFVMLAVNLTPQSQGLIGRRELSLMK 231

Query:   277 KGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVG 336
               + L+N+ RG L+D +A+   L+ G +    +DV + EP   + P+L+ KNV +TPH+G
Sbjct:   232 PTATLINVGRGLLVDQDALVEALQTGVIKAAALDVTYPEPLPRDHPLLELKNVTLTPHIG 291

Query:   337 GVTEHSYRSMAKVVGDVALQLHAGTPL 363
               T  + R M + + +  L   +G P+
Sbjct:   292 SATHQARRQMMENLVESILASLSGLPI 318

GO:0051287 "NAD binding" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

TAIR|locus:2185500 FDH "formate dehydrogenase" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 78/252 (30%), Positives = 123/252 (48%)

Query:    95 ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK 154
             I +A  +KL++  G+G + +D+ AA   G+ VA + G    N  S AE  +  +L L+R 
Sbjct:   114 IKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGS---NVVSVAEDELMRILILMRN 170

Query:   155 ----QNEMRMAIEQKKLGVP-TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 209
                  N++    E    G+      L GKT+  +G G IG  L +RL+PFG  ++     
Sbjct:   171 FVPGYNQVVKG-EWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLY---- 225

Query:   210 WASHSQVSCQSSALAVKNGIIDDLVDEKGCH--EDIFEFASKADVVVCCLSLNKQTAGIV 267
                H ++            +  +L  E G    ED+ E   K DV+V  + L ++T G+ 
Sbjct:   226 ---HDRLQ-----------MAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMF 271

Query:   268 NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFK 327
             NK  +  +KKG L+VN ARG +++ +A+   +E GH+GG   DV   +P   + P     
Sbjct:   272 NKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMP 331

Query:   328 NVLITPHVGGVT 339
             N  +TPH  G T
Sbjct:   332 NQAMTPHTSGTT 343

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA;TAS

GO:0008152 "metabolic process" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009611 "response to wounding" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

UNIPROTKB|P0A544 serA "D-3-phosphoglycerate dehydrogenase" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 179 (68.1 bits), Expect = 2.8e-23, Sum P(2) = 2.8e-23
 Identities = 43/117 (36%), Positives = 66/117 (56%)

Query:   245 EFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHL 304
             +  ++AD +   L    +TAG+++K  L+  K G ++VN ARGGL+D  A+A  +  GH+
Sbjct:   191 DLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHV 250

Query:   305 GGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVT-EHSYRSMAKVVGDVALQLHAG 360
                G+DV  TEP   + P+ +   V++TPH+G  T E   R+   V   V L L AG
Sbjct:   251 RAAGLDVFATEPCT-DSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLAL-AG 305

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006564 "L-serine biosynthetic process" evidence=IDA

GO:0040007 "growth" evidence=IMP

GO:0051289 "protein homotetramerization" evidence=IPI

TIGR_CMR|CJE_0970 CJE_0970 "D-3-phosphoglycerate dehydrogenase" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 180 (68.4 bits), Expect = 5.5e-23, Sum P(2) = 5.5e-23
 Identities = 47/131 (35%), Positives = 69/131 (52%)

Query:   230 IDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL 289
             I DL  E+  + D  E   K+D +       K+T G++ K  ++ MK G  L+N ARGGL
Sbjct:   181 ITDLDMEQAKNLD--EILEKSDFITIHTPKTKETNGMIGKQEIAKMKDGIRLINCARGGL 238

Query:   290 LDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKV 349
                EA+   L+ G +  LGIDV   EP   N P+L F+N+ +T H+G  T  S  ++A+ 
Sbjct:   239 YTEEALYEGLKSGKIAWLGIDVFDKEPAT-NHPLLDFENISVTSHLGANTLESQDNIARE 297

Query:   350 VGDVALQLHAG 360
               + AL    G
Sbjct:   298 ACEQALSAARG 308

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=ISS

GO:0006564 "L-serine biosynthetic process" evidence=ISS

UNIPROTKB|E1BRZ4 LOC420808 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 79/275 (28%), Positives = 135/275 (49%)

Query:    90 LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 149
             +D + +     +K+I   GVG++ +D+      G+K+A  P  V+   +S A+  + L+L
Sbjct:    17 IDKDLLQSLPNLKVIANSGVGMDHLDLKLVASFGVKMANAPCAVS---SSTADTGMALLL 73

Query:   150 GLLRKQNE-MRMAIEQKKLGVPT---GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 205
                R+  E   +A+            G  + G T+ I+G G+IG ++A R + F +KI+ 
Sbjct:    74 ASARRLVEGYHVAVSPGMEYCEADFLGVEVTGATLGIIGMGSIGYKIALRAKAFEMKILY 133

Query:   206 TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAG 265
               R+     +     +    K   IDDL+    C         +AD V+  +SL  QT  
Sbjct:   134 HNRTRRKEQEEQAVGALYCEK---IDDLL----C---------QADFVMVVVSLTPQTHK 177

Query:   266 IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILK 325
             ++ K  +  MK  + L+NI+RG ++D EA+   L  G +    +DV + EP   + P+LK
Sbjct:   178 LIGKREMELMKPTATLINISRGAVVDQEALVIALRSGVIRAAALDVTYPEPLPRDHPLLK 237

Query:   326 FKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAG 360
              KNV+ITPH+G  T+ + R + +   +  L   AG
Sbjct:   238 LKNVIITPHLGIKTDKATRMITEEAVENILAALAG 272

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

UNIPROTKB|Q0BWN7 gyaR "Glyoxylate reductase" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 81/270 (30%), Positives = 133/270 (49%)

Query:    87 TMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTI 145
             T ++D   ++RA +Q++LI QFG G++ +D+ +A + GI V   PG +T + A  A   +
Sbjct:    57 TDKIDGRLMARAGDQLRLIAQFGAGVDNIDVASAVQRGITVTNTPGVLTDDTADVA---M 113

Query:   146 YLMLGLLRKQNEMRMAIEQKKLG--VPT---GETLLGKTVFILGFGNIGVELAKRLRPFG 200
              L+L + R+ +E    +E  K     PT   G  L GK + I+G G IG  +A+R R FG
Sbjct:   114 ALILAVPRRMHEGVQIMEAGKFDGWTPTWMMGRRLSGKRLGIIGMGRIGQAVARRARAFG 173

Query:   201 VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLN 260
             ++I    R   S S++  + S  A     +D ++             ++ D+V       
Sbjct:   174 MQIHYHNRKPVS-SRI--EESLEATYWDSLDQML-------------ARMDIVSINCPHT 217

Query:   261 KQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPN 320
               T  ++N   L  MK  + ++N ARG ++D  A+A  +  G + G G+DV   EP   N
Sbjct:   218 PATFHLINARRLGLMKPEAYIINTARGEVIDEAALARAIRAGKIAGAGLDVFEREPA-VN 276

Query:   321 DPILKFKNVLITPHVGGVTEHSYRSMAKVV 350
               ++   NVL+ PH+G  T      M + V
Sbjct:   277 PELIGLPNVLLLPHMGSATIEGRTEMGEKV 306

GO:0046487 "glyoxylate metabolic process" evidence=ISS

GO:0047964 "glyoxylate reductase activity" evidence=ISS

ZFIN|ZDB-GENE-030131-647 phgdh "phosphoglycerate dehydrogenase" [Danio rerio (taxid:7955)]

 Score = 172 (65.6 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
 Identities = 44/129 (34%), Positives = 75/129 (58%)

Query:    79 NYHLCVVKTM-RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNA 137
             NY   +V++  ++ ++ I+  + +K+I + G G++ VD++AAT+ GI V   P   +GN 
Sbjct:    47 NYDGLIVRSATKVTADVINAGSSLKIIGRAGTGVDNVDVDAATKRGIIVMNTP---SGNT 103

Query:   138 ASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPT--GETLLGKTVFILGFGNIGVELAKR 195
              S AELT  L++ L R   +  ++++  K       G  L GK + I+G G IG E+A R
Sbjct:   104 LSAAELTCALVMSLSRHIPQAVISMKDGKWDRKKFMGSELYGKVLGIVGLGRIGKEVATR 163

Query:   196 LRPFGVKII 204
             ++ FG+K I
Sbjct:   164 MQSFGMKTI 172

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0006564 "L-serine biosynthetic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_410478	SubName- Full=Putative uncharacterized protein; (344 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.1441.1.1	annotation not avaliable (142 aa)			•						0.401

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	370
PLN02928	347	PLN02928, PLN02928, oxidoreductase family protein	0.0
cd12175	311	cd12175, 2-Hacid_dh_11, Putative D-isomer specific	1e-114
cd05198	302	cd05198, formate_dh_like, Formate/glycerate and re	6e-63
COG0111	324	COG0111, SerA, Phosphoglycerate dehydrogenase and	7e-63
cd12172	306	cd12172, PGDH_like_2, Putative D-3-Phosphoglycerat	7e-61
cd12173	304	cd12173, PGDH_4, Phosphoglycerate dehydrogenases,	4e-58
COG1052	324	COG1052, LdhA, Lactate dehydrogenase and related d	1e-57
cd12165	314	cd12165, 2-Hacid_dh_6, Putative D-isomer specific	2e-53
cd12171	310	cd12171, 2-Hacid_dh_10, Putative D-isomer specific	6e-53
pfam02826	175	pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro	9e-52
cd12177	321	cd12177, 2-Hacid_dh_12, Putative D-isomer specific	2e-51
cd05301	309	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyr	2e-50
cd05300	313	cd05300, 2-Hacid_dh_1, Putative D-isomer specific	3e-50
cd05299	312	cd05299, CtBP_dh, C-terminal binding protein (CtBP	1e-49
cd05303	301	cd05303, PGDH_2, Phosphoglycerate dehydrogenase (P	4e-49
TIGR01327	525	TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenas	4e-46
cd12168	321	cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-l	5e-46
PRK13581	526	PRK13581, PRK13581, D-3-phosphoglycerate dehydroge	5e-45
cd12178	317	cd12178, 2-Hacid_dh_13, Putative D-isomer specific	8e-45
cd12169	308	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerat	6e-44
cd12156	301	cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase,	9e-43
pfam00389	312	pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxy	2e-41
cd12162	307	cd12162, 2-Hacid_dh_4, Putative D-isomer specific	3e-41
PRK13243	333	PRK13243, PRK13243, glyoxylate reductase; Reviewed	7e-40
cd12161	315	cd12161, GDH_like_1, Putative glycerate dehydrogen	2e-39
cd12179	306	cd12179, 2-Hacid_dh_14, Putative D-isomer specific	1e-38
cd12157	318	cd12157, PTDH, Thermostable Phosphite Dehydrogenas	2e-38
cd12159	303	cd12159, 2-Hacid_dh_2, Putative D-isomer specific	2e-38
cd05302	348	cd05302, FDH, NAD-dependent Formate Dehydrogenase	2e-37
cd12174	305	cd12174, PGDH_like_3, Putative D-3-Phosphoglycerat	2e-36
cd12167	330	cd12167, 2-Hacid_dh_8, Putative D-isomer specific	2e-36
cd12166	300	cd12166, 2-Hacid_dh_7, Putative D-isomer specific	3e-36
cd01619	323	cd01619, LDH_like, D-Lactate and related Dehydroge	6e-36
cd12155	314	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2	9e-35
PLN03139	386	PLN03139, PLN03139, formate dehydrogenase; Provisi	2e-31
cd12187	329	cd12187, LDH_like_1, D-Lactate and related Dehydro	1e-30
cd12176	304	cd12176, PGDH_3, Phosphoglycerate dehydrogenases,	8e-30
PRK07574	385	PRK07574, PRK07574, formate dehydrogenase; Provisi	1e-29
cd12164	306	cd12164, GDH_like_2, Putative glycerate dehydrogen	2e-29
cd12185	322	cd12185, HGDH_LDH_like, Putative Lactate dehydroge	2e-29
cd12186	329	cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydr	3e-28
PRK06487	317	PRK06487, PRK06487, glycerate dehydrogenase; Provi	3e-27
cd12180	308	cd12180, 2-Hacid_dh_15, Putative D-isomer specific	3e-26
cd12183	328	cd12183, LDH_like_2, D-Lactate and related Dehydro	3e-25
cd12184	330	cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydro	8e-25
cd12163	334	cd12163, 2-Hacid_dh_5, Putative D-isomer specific	6e-24
cd12160	310	cd12160, 2-Hacid_dh_3, Putative D-isomer specific	2e-23
PRK11790	409	PRK11790, PRK11790, D-3-phosphoglycerate dehydroge	2e-22
PRK06932	314	PRK06932, PRK06932, glycerate dehydrogenase; Provi	4e-22
PRK08410	311	PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; P	2e-21
PRK06436	303	PRK06436, PRK06436, glycerate dehydrogenase; Provi	1e-20
cd12158	343	cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Deh	2e-18
PRK15409	323	PRK15409, PRK15409, bifunctional glyoxylate/hydrox	5e-16
PLN02306	386	PLN02306, PLN02306, hydroxypyruvate reductase	3e-15
cd12154	310	cd12154, FDH_GDH_like, Formate/glycerate dehydroge	3e-15
PRK08605	332	PRK08605, PRK08605, D-lactate dehydrogenase; Valid	1e-14
PRK12480	330	PRK12480, PRK12480, D-lactate dehydrogenase; Provi	3e-14
PRK15469	312	PRK15469, ghrA, bifunctional glyoxylate/hydroxypyr	5e-14
PRK15438	378	PRK15438, PRK15438, erythronate-4-phosphate dehydr	1e-07
PRK00257	381	PRK00257, PRK00257, erythronate-4-phosphate dehydr	1e-05
cd01076	227	cd01076, NAD_bind_1_Glu_DH, NAD(P) binding domain	6e-05
PRK08306	296	PRK08306, PRK08306, dipicolinate synthase subunit	8e-05
smart01002	149	smart01002, AlaDh_PNT_C, Alanine dehydrogenase/PNT	1e-04
cd01620	317	cd01620, Ala_dh_like, Alanine dehydrogenase and re	1e-04
cd12170	294	cd12170, 2-Hacid_dh_9, Putative D-isomer specific	8e-04
PRK14806	735	PRK14806, PRK14806, bifunctional cyclohexadienyl d	0.001
COG0334	411	COG0334, GdhA, Glutamate dehydrogenase/leucine deh	0.001
PLN02477	410	PLN02477, PLN02477, glutamate dehydrogenase	0.004

>gnl|CDD|215501 PLN02928, PLN02928, oxidoreductase family protein

 Score =  612 bits (1579), Expect = 0.0
 Identities = 242/348 (69%), Positives = 287/348 (82%), Gaps = 5/348 (1%)

Query: 23  SKMEGMARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHL 82
            K++     SD   TRVLFCGP FPAS++YT+EYLQ YP IQVD V   DVPDVIANY +
Sbjct: 5   VKIDKRVHHSDMRPTRVLFCGPEFPASYSYTREYLQKYPFIQVDAVAREDVPDVIANYDI 64

Query: 83  CVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAE 142
           CV K MRLD++ I+RA+QMKLIMQFGVGLEGVD++AAT+ GIKVARIP + TGNAASCAE
Sbjct: 65  CVPKMMRLDADIIARASQMKLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAE 124

Query: 143 LTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVK 202
           + IYLMLGLLRKQNEM+++++ ++LG P G+TL GKTVFILG+G IG+ELAKRLRPFGVK
Sbjct: 125 MAIYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGYGAIGIELAKRLRPFGVK 184

Query: 203 IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQ 262
           ++AT+RSW S  +         + NG +DDLVDEKG HEDI+EFA +AD+VV C +L K+
Sbjct: 185 LLATRRSWTSEPEDGLL-----IPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKE 239

Query: 263 TAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDP 322
           TAGIVN  FLSSMKKG+LLVNIARGGLLDY+A+   LE GHLGGL IDVAW+EPFDP+DP
Sbjct: 240 TAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDP 299

Query: 323 ILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGLEFVN 370
           ILK  NV+ITPHV GVTE+SYRSM K+VGD ALQLHAG PLTG+EFVN
Sbjct: 300 ILKHPNVIITPHVAGVTEYSYRSMGKIVGDAALQLHAGRPLTGIEFVN 347

Length = 347

>gnl|CDD|240652 cd12175, 2-Hacid_dh_11, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  333 bits (856), Expect = e-114
 Identities = 123/331 (37%), Positives = 181/331 (54%), Gaps = 25/331 (7%)

Query: 38  RVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVP-DVIANYHLCVVKTMR-LDSNCI 95
           +VLF GP FP +    +  L   P ++V      D    ++A+  + V    + +D+  +
Sbjct: 1   KVLFLGPEFPDAEELLRALLPPAPGVEVVTAAELDEEAALLADADVLVPGMRKVIDAELL 60

Query: 96  SRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQ 155
           + A +++LI Q GVGL+GVD+ AAT  GI VA IPG   GNA S AE  + LML LLR+ 
Sbjct: 61  AAAPRLRLIQQPGVGLDGVDLEAATARGIPVANIPG---GNAESVAEHAVMLMLALLRRL 117

Query: 156 NEMRMAIEQKKLGVPTGE---TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 212
            E    +   + G P G     L GKTV I+G GNIG  +A+RLR FGV++I   R    
Sbjct: 118 PEADRELRAGRWGRPEGRPSRELSGKTVGIVGLGNIGRAVARRLRGFGVEVIYYDRFRDP 177

Query: 213 HSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFL 272
                              +  D    + ++ E  +++DVV   + L  +T  ++    L
Sbjct: 178 -----------------EAEEKDLGVRYVELDELLAESDVVSLHVPLTPETRHLIGAEEL 220

Query: 273 SSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLIT 332
           ++MK G++L+N ARGGL+D EA+   L  GHL G G+DV W EP  P+DP+L+  NV++T
Sbjct: 221 AAMKPGAILINTARGGLVDEEALLAALRSGHLAGAGLDVFWQEPLPPDDPLLRLDNVILT 280

Query: 333 PHVGGVTEHSYRSMAKVVGDVALQLHAGTPL 363
           PH+ GVT+ SY+ MA +V +   +L  G P 
Sbjct: 281 PHIAGVTDESYQRMAAIVAENIARLLRGEPP 311

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 311

>gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family

 Score =  203 bits (518), Expect = 6e-63
 Identities = 89/260 (34%), Positives = 140/260 (53%), Gaps = 26/260 (10%)

Query: 95  ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK 154
           +++A ++K I   G G++ +D++AA + GI V  +PG    NA + AE  + L+L LLR+
Sbjct: 58  LAKAPKLKFIQVAGAGVDNIDLDAAKKRGITVTNVPG---ANAEAVAEHALGLLLALLRR 114

Query: 155 ----QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 210
                  +R        G P G  L GKTV I+G G IG  +AKRL+ FG+K++   R+ 
Sbjct: 115 LPRADAAVRRGWGWLWAGFP-GYELEGKTVGIVGLGRIGQRVAKRLQAFGMKVLYYDRT- 172

Query: 211 ASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKS 270
                          K    +DL         + E  +++DVVV  L L  +T  ++N+ 
Sbjct: 173 --------------RKPEPEEDLGFR---VVSLDELLAQSDVVVLHLPLTPETRHLINEE 215

Query: 271 FLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL 330
            L+ MK G++LVN ARGGL+D +A+   L+ G + G  +DV   EP   + P+L+  NV+
Sbjct: 216 ELALMKPGAVLVNTARGGLVDEDALLRALKSGKIAGAALDVFEPEPLPADHPLLELPNVI 275

Query: 331 ITPHVGGVTEHSYRSMAKVV 350
           +TPH+ G TE +   MA++ 
Sbjct: 276 LTPHIAGYTEEARERMAEIA 295

Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302

>gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

 Score =  203 bits (519), Expect = 7e-63
 Identities = 87/294 (29%), Positives = 144/294 (48%), Gaps = 30/294 (10%)

Query: 63  IQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRC 122
                +   ++ + +A+    +V    +    ++ A  +K I + G G++ +D+ AAT+ 
Sbjct: 29  PDGPDLDEEELLEALADADALIVSVTPVTEEVLAAAPNLKAIGRAGAGVDNIDLEAATKR 88

Query: 123 GIKVARIPGDVTGNAASCAELTIYLMLGLLRK----QNEMRMAIEQKKLGVPTGETLLGK 178
           GI V   PG   GNA S AEL + L+L L R+        R     +K     G  L GK
Sbjct: 89  GILVVNAPG---GNAISVAELVLALLLALARRIPDADASQRRGEWDRKAF--RGTELAGK 143

Query: 179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG 238
           TV I+G G IG  +AKRL+ FG+K+I                           +     G
Sbjct: 144 TVGIIGLGRIGRAVAKRLKAFGMKVIGYDPY-------------------SPRERAGVDG 184

Query: 239 CH--EDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIA 296
               + + E  ++AD++   L L  +T G++N   L+ MK G++L+N ARGG++D +A+ 
Sbjct: 185 VVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALL 244

Query: 297 HYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVV 350
             L+ G + G  +DV   EP   + P+    NV++TPH+GG T+ +   +A++V
Sbjct: 245 AALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQERVAEIV 298

Length = 324

>gnl|CDD|240649 cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  197 bits (504), Expect = 7e-61
 Identities = 84/254 (33%), Positives = 136/254 (53%), Gaps = 23/254 (9%)

Query: 95  ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK 154
           ++ A ++K+I ++GVG + +D+ AA + GI V   PG    N+ S AELTI LML L R+
Sbjct: 63  LAAAPRLKVISRYGVGYDNIDLEAAKKRGIVVTNTPG---ANSNSVAELTIGLMLALARQ 119

Query: 155 QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHS 214
             +    +       P G  L GKT+ I+G G IG  +A+RL  FG+K++A         
Sbjct: 120 IPQADREVRAGGWDRPVGTELYGKTLGIIGLGRIGKAVARRLSGFGMKVLAYDPYP---- 175

Query: 215 QVSCQSSALAVKNGI-IDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLS 273
                    A ++G+    L       E++ +   ++D +   L L  +T  ++N + L+
Sbjct: 176 -----DEEFAKEHGVEFVSL-------EELLK---ESDFISLHLPLTPETRHLINAAELA 220

Query: 274 SMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITP 333
            MK G++L+N ARGGL+D EA+   L+ G + G  +DV   EP   + P+L+  NV++TP
Sbjct: 221 LMKPGAILINTARGGLVDEEALYEALKSGRIAGAALDVFEEEPPPADSPLLELPNVILTP 280

Query: 334 HVGGVTEHSYRSMA 347
           H+G  T+ +   M 
Sbjct: 281 HIGASTKEAVLRMG 294

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 306

>gnl|CDD|240650 cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  190 bits (486), Expect = 4e-58
 Identities = 105/333 (31%), Positives = 162/333 (48%), Gaps = 45/333 (13%)

Query: 38  RVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISD---VPDVIANYHLCVVKTM-RLDSN 93
           +VL   P          E L+    I+VDV P      +  +IA+    +V++  ++ + 
Sbjct: 1   KVLVTDPIDEEGL----ELLREA-GIEVDVAPGLSEEELLAIIADADALIVRSATKVTAE 55

Query: 94  CISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR 153
            I  A ++K+I + GVG++ +D+ AAT  GI V   PG    N  S AE TI LML L R
Sbjct: 56  VIEAAPRLKVIGRAGVGVDNIDVEAATARGILVVNAPG---ANTISVAEHTIALMLALAR 112

Query: 154 KQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR 208
              +   ++     ++KK     G  L GKT+ I+G G IG E+A+R R FG+K++A   
Sbjct: 113 NIPQADASLRAGKWDRKKF---MGVELRGKTLGIVGLGRIGREVARRARAFGMKVLAYDP 169

Query: 209 SWASHSQVSCQSSALAVKNGIIDDLVDEKGCHE--DIFEFASKADVVVCCLSLNKQTAGI 266
                                I       G  E   + E  ++AD +     L  +T G+
Sbjct: 170 --------------------YISAERAAAGGVELVSLDELLAEADFISLHTPLTPETRGL 209

Query: 267 VNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKF 326
           +N   L+ MK G++L+N ARGG++D  A+A  L+ G + G  +DV   EP   + P+L  
Sbjct: 210 INAEELAKMKPGAILINTARGGIVDEAALADALKSGKIAGAALDVFEQEPPPADSPLLGL 269

Query: 327 KNVLITPHVGGVTEHSYRSMAKVVGDVALQLHA 359
            NV++TPH+G  TE +   +A    D A Q+ A
Sbjct: 270 PNVILTPHLGASTEEAQERVAV---DAAEQVLA 299

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

 Score =  190 bits (484), Expect = 1e-57
 Identities = 84/298 (28%), Positives = 149/298 (50%), Gaps = 31/298 (10%)

Query: 63  IQVDVVPISDVPDVIANYH-LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATR 121
            + D+ P +++ + + +   +      R+D+  + +   +KLI     G + VD+ AA  
Sbjct: 28  YEDDLTPDTELAERLKDADAVITFVNDRIDAEVLEKLPGLKLIATRSAGYDNVDLEAAKE 87

Query: 122 CGIKVARIPGDVTGNAASCAELTIYLMLGLLRK--QNEMRMA----IEQKKLGVPTGETL 175
            GI V  +PG  T    + AE  + L+L L R+  + + R+               G  L
Sbjct: 88  RGITVTNVPGYST---EAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDL 144

Query: 176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD 235
            GKT+ I+G G IG  +A+RL+ FG+K++   RS                 N   +  + 
Sbjct: 145 RGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRS----------------PNPEAEKELG 188

Query: 236 EKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAI 295
            +  + D+ E  +++D++     L  +T  ++N   L+ MK G++LVN ARGGL+D +A+
Sbjct: 189 AR--YVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQAL 246

Query: 296 AHYLECGHLGGLGIDVAWTEPFDPNDPILK---FKNVLITPHVGGVTEHSYRSMAKVV 350
              L+ G + G G+DV   EP   + P+L+   F NV++TPH+   TE + ++MA++ 
Sbjct: 247 IDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEARKAMAELA 304

Length = 324

>gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  178 bits (454), Expect = 2e-53
 Identities = 88/325 (27%), Positives = 148/325 (45%), Gaps = 47/325 (14%)

Query: 60  YPSIQVDVVPISD--VPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDIN 117
              +  +V  + D    + + +  + V   +  +   ++   ++KLI     G++ + + 
Sbjct: 19  LEGLYAEVPELPDEAAEEALEDADVLVGGRLTKEEA-LAALKRLKLIQVPSAGVDHLPL- 76

Query: 118 AATRCGIKVARIPGDVT-----GNAASCAELTIYLMLGLLRK----QNEMRMAI-EQKKL 167
                     R+P  V      GN+ + AE  + L+L L ++     N++R  I   +  
Sbjct: 77  ---------ERLPEGVVVANNHGNSPAVAEHALALILALAKRIVEYDNDLRRGIWHGRAG 127

Query: 168 GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKN 227
             P  + L GKTV ILG+G+IG E+A+ L+ FG+++I   RS                  
Sbjct: 128 EEPESKELRGKTVGILGYGHIGREIARLLKAFGMRVIGVSRS------------------ 169

Query: 228 GIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG 287
              D+  D  G   D+ E   +ADVVV  L L KQT G++  + L++MK G++LVN+ RG
Sbjct: 170 PKEDEGADFVGTLSDLDEALEQADVVVVALPLTKQTRGLIGAAELAAMKPGAILVNVGRG 229

Query: 288 GLLDYEAIAHYLECGHLGGLGIDVAWTEP------FDPNDPILKFKNVLITPHVGGVTEH 341
            ++D EA+   L+   + G  IDV W  P           P  +  NV+++PH  G TE 
Sbjct: 230 PVVDEEALYEALKERPIAGAAIDVWWRYPSRGDPVAPSRYPFHELPNVIMSPHNAGWTEE 289

Query: 342 SYRSMAKVVGDVALQLHAGTPLTGL 366
           ++R       +   +   G PL  L
Sbjct: 290 TFRRRIDEAAENIRRYLRGEPLLNL 314

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|240648 cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  177 bits (451), Expect = 6e-53
 Identities = 87/290 (30%), Positives = 133/290 (45%), Gaps = 37/290 (12%)

Query: 75  DVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGV---GLEGVDINAATRCGIKVARIPG 131
           + + +  + +     +    I  A ++KLI   GV   G E VD+ AAT  GI V   PG
Sbjct: 42  EALKDADILITHFAPVTKKVIEAAPKLKLI---GVCRGGPENVDVEAATERGIPVLNTPG 98

Query: 132 DVTGNAASCAELTIYLMLGLLRK----QNEMRMAIEQKKL--GVPTGETLLGKTVFILGF 185
               NA + AE T+ LML   R        ++    +K        G  L GKTV I+GF
Sbjct: 99  R---NAEAVAEFTVGLMLAETRNIARAHAALKDGEWRKDYYNYDGYGPELRGKTVGIVGF 155

Query: 186 GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFE 245
           G IG  +AKRL+ FG +++     +                   I+    +K   E++ +
Sbjct: 156 GAIGRRVAKRLKAFGAEVLVYD-PYVDPE--------------KIEADGVKKVSLEELLK 200

Query: 246 FASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG 305
              ++DVV     L  +T G++     + MK  +  +N AR GL+D +A+   LE G +G
Sbjct: 201 ---RSDVVSLHARLTPETRGMIGAEEFALMKPTAYFINTARAGLVDEDALIEALEEGKIG 257

Query: 306 GLGIDVAWTEPFDPNDPILKFKNVLITPHVGG----VTEHSYRSMAKVVG 351
           G  +DV   EP   + P+LK  NV +TPH+ G    V E S   +A+ + 
Sbjct: 258 GAALDVFPEEPLPADHPLLKLDNVTLTPHIAGATRDVAERSPEIIAEELK 307

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

 Score =  169 bits (432), Expect = 9e-52
 Identities = 62/195 (31%), Positives = 97/195 (49%), Gaps = 23/195 (11%)

Query: 145 IYLMLGLLRKQNEMRMAIEQKKL--GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVK 202
           + L+L L R+  E    +   +       G  L GKTV I+G G IG  +A+RL+ FG+K
Sbjct: 1   LALLLALARRIPEADRQVRAGRWRPDALLGRELSGKTVGIIGLGRIGRAVARRLKAFGMK 60

Query: 203 IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCH-EDIFEFASKADVVVCCLSLNK 261
           +IA  R                          +  G     + E  +++DVV   L L  
Sbjct: 61  VIAYDRY--------------------PKAEAEALGARYVSLDELLAESDVVSLHLPLTP 100

Query: 262 QTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPND 321
           +T  ++N   L+ MK G++L+N ARGGL+D +A+   L+ G + G  +DV   EP  P+ 
Sbjct: 101 ETRHLINAERLALMKPGAILINTARGGLVDEDALIAALKSGRIAGAALDVFEPEPLPPDH 160

Query: 322 PILKFKNVLITPHVG 336
           P+L+  NV++TPH+ 
Sbjct: 161 PLLELPNVILTPHIA 175

This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175

>gnl|CDD|240654 cd12177, 2-Hacid_dh_12, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  173 bits (441), Expect = 2e-51
 Identities = 90/269 (33%), Positives = 138/269 (51%), Gaps = 24/269 (8%)

Query: 102 KLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMA 161
           KLI + G+G + VD+ AAT  G+ V R+PG V     + AE  + L+L +LRK N+   A
Sbjct: 71  KLIARHGIGYDNVDLKAATEHGVIVTRVPGAV--ERDAVAEHAVALILTVLRKINQASEA 128

Query: 162 IEQKKLGVPT---GETLLGKTVFILGFGNIGVELAKRLRP-FGVKIIATKRSWASHSQVS 217
           +++ K        G  L GKTV I+G+GNIG  +A+ L+  F  K++A     +      
Sbjct: 129 VKEGKWTERANFVGHELSGKTVGIIGYGNIGSRVAEILKEGFNAKVLAYDPYVSE----- 183

Query: 218 CQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKK 277
                +  K      L       E++     ++D++     L ++T  ++N+   S MKK
Sbjct: 184 ---EVIKKKGAKPVSL-------EELLA---ESDIISLHAPLTEETYHMINEKAFSKMKK 230

Query: 278 GSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGG 337
           G +LVN ARG L+D EA+   L+ G + G G+DV   EP   + P+L ++NV+ITPH+G 
Sbjct: 231 GVILVNTARGELIDEEALIEALKSGKIAGAGLDVLEEEPIKADHPLLHYENVVITPHIGA 290

Query: 338 VTEHSYRSMAKVVGDVALQLHAGTPLTGL 366
            T  S   M + V D      AG    G+
Sbjct: 291 YTYESLYGMGEKVVDDIEDFLAGKEPKGI 319

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 321

>gnl|CDD|240626 cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH)

 Score =  171 bits (435), Expect = 2e-50
 Identities = 80/274 (29%), Positives = 134/274 (48%), Gaps = 26/274 (9%)

Query: 82  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 141
           L    T ++D+  +  A  +K+I  + VG + +D++AA   GI V   P  +T    + A
Sbjct: 47  LLCTLTDKIDAELLDAAPPLKVIANYSVGYDHIDVDAAKARGIPVTNTPDVLT---DATA 103

Query: 142 ELTIYLMLGLLRKQNEM-RMAIEQKKLGV-PT---GETLLGKTVFILGFGNIGVELAKRL 196
           +L   L+L   R+  E  R     +  G  PT   G  L GKT+ I+G G IG  +A+R 
Sbjct: 104 DLAFALLLAAARRVVEGDRFVRAGEWKGWSPTLLLGTDLHGKTLGIVGMGRIGQAVARRA 163

Query: 197 RPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 256
           + FG+KI+   RS     +       L  +             +  + E  +++D V   
Sbjct: 164 KGFGMKILYHNRS-----RKPEAEEELGAR-------------YVSLDELLAESDFVSLH 205

Query: 257 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEP 316
             L  +T  ++N   L+ MK  ++L+N ARGG++D +A+   L+ G + G G+DV   EP
Sbjct: 206 CPLTPETRHLINAERLALMKPTAILINTARGGVVDEDALVEALKSGKIAGAGLDVFEPEP 265

Query: 317 FDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVV 350
              + P+L   NV++ PH+G  T  +  +MA++ 
Sbjct: 266 LPADHPLLTLPNVVLLPHIGSATVETRTAMAELA 299

D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 309

>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase

 Score =  170 bits (433), Expect = 3e-50
 Identities = 75/324 (23%), Positives = 139/324 (42%), Gaps = 25/324 (7%)

Query: 45  HFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLI 104
             P    + +      P  ++ VV   ++ + +A+    V+         +  A +++ I
Sbjct: 6   LSPLDDEHLERLRAAAPGAELRVVTAEELTEELADAD--VLLGNPPLPELLPAAPRLRWI 63

Query: 105 MQFGVGLEGVDINAATRCGIKVARIPGDVTG-NAASCAELTIYLMLGLLRKQNEMRMAIE 163
                G++ +         + +        G      AE  +  ML   RK         
Sbjct: 64  QSTSAGVDALLFPELLERDVVLTN----ARGIFGPPIAEYVLGYMLAFARKLPRYARNQA 119

Query: 164 QKK-LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSA 222
           +++         L GKTV I+G G+IG E+A+R + FG+++I  +RS      V      
Sbjct: 120 ERRWQRRGPVRELAGKTVLIVGLGDIGREIARRAKAFGMRVIGVRRSGRPAPPV------ 173

Query: 223 LAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLV 282
                  +D++       +++ E   +AD VV  L L  +T G+ N    ++MK G++L+
Sbjct: 174 -------VDEVYTP----DELDELLPEADYVVNALPLTPETRGLFNAERFAAMKPGAVLI 222

Query: 283 NIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHS 342
           N+ RG ++D +A+   LE G + G  +DV   EP   + P+    NV+ITPH+ G +   
Sbjct: 223 NVGRGSVVDEDALIEALESGRIAGAALDVFEEEPLPADSPLWDLPNVIITPHISGDSPSY 282

Query: 343 YRSMAKVVGDVALQLHAGTPLTGL 366
              + ++  +   +  AG PL  +
Sbjct: 283 PERVVEIFLENLRRYLAGEPLLNV 306

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313

>gnl|CDD|240624 cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

 Score =  168 bits (429), Expect = 1e-49
 Identities = 77/279 (27%), Positives = 129/279 (46%), Gaps = 38/279 (13%)

Query: 75  DVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPG--- 131
           D +   +        + +  I    ++K+I+++GVG++ VD+ AAT  GI V  +P    
Sbjct: 46  DALLVQYA------PVTAEVIEALPRLKVIVRYGVGVDNVDVAAATERGIPVCNVPDYCT 99

Query: 132 -DVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLL---GKTVFILGFGN 187
            +V       A+  + L+L L RK   +  A+         G  +    G T+ ++GFG 
Sbjct: 100 EEV-------ADHALALILALARKLPFLDRAVRAGGWDWTVGGPIRRLRGLTLGLVGFGR 152

Query: 188 IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA 247
           IG  +AKR + FG ++IA                   V +G+           +++    
Sbjct: 153 IGRAVAKRAKAFGFRVIAYDPY---------------VPDGVAALGGVRVVSLDELLA-- 195

Query: 248 SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGL 307
            ++DVV     L  +T  +++   L+ MK G+ LVN ARGGL+D  A+A  L+ G + G 
Sbjct: 196 -RSDVVSLHCPLTPETRHLIDAEALALMKPGAFLVNTARGGLVDEAALARALKSGRIAGA 254

Query: 308 GIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSM 346
            +DV   EP   + P+L   NV++TPH    +E S   +
Sbjct: 255 ALDVLEEEPPPADSPLLSAPNVILTPHAAWYSEESLAEL 293

The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity. Length = 312

>gnl|CDD|240628 cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains

 Score =  166 bits (424), Expect = 4e-49
 Identities = 94/307 (30%), Positives = 152/307 (49%), Gaps = 35/307 (11%)

Query: 55  EYLQNYPSIQVDVVPISD---VPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVG 110
           E L+     +VD  P+     + + I +Y + +V++  ++    I  A  +K+I + GVG
Sbjct: 15  EKLEE-AGFEVDYEPLIAKEELLEKIKDYDVLIVRSRTKVTKEVIDAAKNLKIIARAGVG 73

Query: 111 LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK----QNEMRMAI-EQK 165
           L+ +D+  A + GIKV   PG    ++ S AEL I LML L R       EM++    +K
Sbjct: 74  LDNIDVEYAKKKGIKVINTPG---ASSNSVAELVIGLMLSLARFIHRANREMKLGKWNKK 130

Query: 166 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAV 225
           K     G  L GKT+ I+GFG IG E+AK  R  G+ +IA                  AV
Sbjct: 131 KY---KGIELRGKTLGIIGFGRIGREVAKIARALGMNVIAYDPY---------PKDEQAV 178

Query: 226 KNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA 285
           + G+       K     + E    +D +   + L  +T  ++NK  L  MK G++++N +
Sbjct: 179 ELGV-------KTV--SLEELLKNSDFISLHVPLTPETKHMINKKELELMKDGAIIINTS 229

Query: 286 RGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRS 345
           RGG++D EA+   L+ G L G  +DV   EP  P   +L+  NV +TPH+G  T+ +   
Sbjct: 230 RGGVIDEEALLEALKSGKLAGAALDVFENEP-PPGSKLLELPNVSLTPHIGASTKEAQER 288

Query: 346 MAKVVGD 352
           + + + +
Sbjct: 289 IGEELAN 295

Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 301

>gnl|CDD|233358 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase

 Score =  164 bits (417), Expect = 4e-46
 Identities = 99/341 (29%), Positives = 163/341 (47%), Gaps = 46/341 (13%)

Query: 38  RVLFCGPHFPASHNYTKEYLQNYPSIQVDVVP-------ISDVPDVIANYHLCVVKTM-R 89
           +VL   P          + L++   ++VDV         +  +PD    Y   +V++  +
Sbjct: 1   KVLIADP----ISPDGIDILED-VGVEVDVQTGLSREELLEIIPD----YDALIVRSATK 51

Query: 90  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 149
           +    I+ A ++K+I + GVG++ +DI AAT  GI V   P   TGN  S AE  + ++L
Sbjct: 52  VTEEVIAAAPKLKVIGRAGVGVDNIDIEAATARGILVVNAP---TGNTISAAEHALAMLL 108

Query: 150 GLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 204
              R   +   ++     ++K      G  L GKT+ ++G G IG  +AKR + FG+K++
Sbjct: 109 AAARNIPQADASLKEGEWDRKAF---MGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVL 165

Query: 205 ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTA 264
           A              S   A + G+   LVD      D+ E  ++AD +     L  +T 
Sbjct: 166 AYD---------PYISPERAEQLGVE--LVD------DLDELLARADFITVHTPLTPETR 208

Query: 265 GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPIL 324
           G++    L+ MKKG ++VN ARGG++D  A+   LE GH+    +DV   EP   ++P+ 
Sbjct: 209 GLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEP-PTDNPLF 267

Query: 325 KFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTG 365
              NV+ TPH+G  T  +  ++A  V +  L    G P+  
Sbjct: 268 DLDNVIATPHLGASTREAQENVATQVAEQVLDALKGLPVPN 308

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli [Amino acid biosynthesis, Serine family]. Length = 525

>gnl|CDD|240645 cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-like dehydrogenases

 Score =  159 bits (405), Expect = 5e-46
 Identities = 76/252 (30%), Positives = 118/252 (46%), Gaps = 31/252 (12%)

Query: 102 KLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMA 161
           K+I   G G + +D++A T+ GI+V+  PG V     + A+  ++L+LG LR  +    +
Sbjct: 78  KIIAHAGAGYDQIDVDALTKRGIQVSNTPGAVD---EATADTALFLILGALRNFSRAERS 134

Query: 162 IEQKKLGVPTGETLL-------GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHS 214
               + G   G   L       GKT+ ILG G IG  +A++   FG+KII   RS     
Sbjct: 135 A---RAGKWRGFLDLTLAHDPRGKTLGILGLGGIGKAIARKAAAFGMKIIYHNRSRLP-- 189

Query: 215 QVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSS 274
                   L                +  + E  +++DVV     L   T  ++NK   + 
Sbjct: 190 ------EELEKALATY---------YVSLDELLAQSDVVSLNCPLTAATRHLINKKEFAK 234

Query: 275 MKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPH 334
           MK G ++VN ARG ++D +A+   LE G +   G+DV   EP   N  +LK  NV + PH
Sbjct: 235 MKDGVIIVNTARGAVIDEDALVDALESGKVASAGLDVFENEPE-VNPGLLKMPNVTLLPH 293

Query: 335 VGGVTEHSYRSM 346
           +G +T  +   M
Sbjct: 294 MGTLTVETQEKM 305

D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 321

>gnl|CDD|237436 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional

 Score =  161 bits (411), Expect = 5e-45
 Identities = 99/305 (32%), Positives = 154/305 (50%), Gaps = 54/305 (17%)

Query: 55  EYLQNYPSIQVDVVPISDVP---DVIANYHLCVVKTM-RLDSNCISRANQMKLIMQFGVG 110
           E L++ P ++VDV    D     ++I +Y   +V++  ++ +  +  A  +K+I + GVG
Sbjct: 15  EILKDAPGVEVDVKTGLDKEELLEIIGDYDALIVRSATKVTAEVLEAAKNLKVIGRAGVG 74

Query: 111 LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR---------KQNEMRMA 161
           ++ VD+ AATR GI V   P   TGN  S AE TI LML L R         K  +    
Sbjct: 75  VDNVDVPAATRRGIIVVNAP---TGNTISAAEHTIALMLALARNIPQAHASLKAGKW--- 128

Query: 162 IEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA------TKRSWASHSQ 215
            E+KK     G  L GKT+ I+G G IG E+AKR + FG+K+IA       +R       
Sbjct: 129 -ERKKF---MGVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISPER------- 177

Query: 216 VSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSM 275
                   A + G+  +LV      +++     +AD +     L  +T G++    L+ M
Sbjct: 178 --------AAQLGV--ELVS----LDELLA---RADFITLHTPLTPETRGLIGAEELAKM 220

Query: 276 KKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHV 335
           K G  ++N ARGG++D  A+A  L+ G + G  +DV   EP   + P+ +  NV++TPH+
Sbjct: 221 KPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEP-PTDSPLFELPNVVVTPHL 279

Query: 336 GGVTE 340
           G  T 
Sbjct: 280 GASTA 284

Length = 526

>gnl|CDD|240655 cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  156 bits (396), Expect = 8e-45
 Identities = 81/284 (28%), Positives = 127/284 (44%), Gaps = 26/284 (9%)

Query: 82  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 141
           L    +  +D   I  A  +K+I  +G G + +D++ A   GI V   P   T      A
Sbjct: 47  LITPLSTPVDKEIIDAAKNLKIIANYGAGFDNIDVDYAKEKGIPVTNTPAVST---EPTA 103

Query: 142 ELTIYLMLGLLRKQNEM-RMAIEQKKLGVP----TGETLLGKTVFILGFGNIGVELAKRL 196
           ELT  L+L L R+  E  R+      LG       G  L GKT+ I+G G IG  +A+R 
Sbjct: 104 ELTFGLILALARRIAEGDRLMRRGGFLGWAPLFFLGHELAGKTLGIIGMGRIGQAVARRA 163

Query: 197 RPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 256
           + FG+KI+   R    H         L      +D+L+              ++D V   
Sbjct: 164 KAFGMKILYYNR----HRLSEETEKELGATYVDLDELL-------------KESDFVSLH 206

Query: 257 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEP 316
                +T  +++ +    MK  + L+N ARG L+D +A+   L+ G + G  +DV   EP
Sbjct: 207 APYTPETHHLIDAAAFKLMKPTAYLINAARGPLVDEKALVDALKTGEIAGAALDVFEFEP 266

Query: 317 FDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAG 360
            + +  + K  NV++TPH+G  T  +  +MAK   D  +    G
Sbjct: 267 -EVSPELKKLDNVILTPHIGNATVEARDAMAKEAADNIISFLEG 309

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 317

>gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases

 Score =  153 bits (389), Expect = 6e-44
 Identities = 89/280 (31%), Positives = 138/280 (49%), Gaps = 34/280 (12%)

Query: 84  VVKTMR----LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAAS 139
            +  MR      +  + R   +KL++  G+    +D+ AA   GI V    G  T    +
Sbjct: 49  AIVLMRERTPFPAALLERLPNLKLLVTTGMRNASIDLAAAKERGIVVCGTGGGPT----A 104

Query: 140 CAELTIYLMLGLLRK----QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKR 195
            AELT  L+L L R        +R    Q  LG      L GKT+ I+G G IG  +A+ 
Sbjct: 105 TAELTWALILALARNLPEEDAALRAGGWQTTLGT----GLAGKTLGIVGLGRIGARVARI 160

Query: 196 LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 255
            + FG+++IA    W+S+  ++ + +A A   G+  +    K   E++F     +DVV  
Sbjct: 161 GQAFGMRVIA----WSSN--LTAERAAAA---GV--EAAVSK---EELFA---TSDVVSL 203

Query: 256 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE 315
            L L+ +T G+V    L+ MK  +LLVN +RG L+D  A+   L  G + G  +DV   E
Sbjct: 204 HLVLSDRTRGLVGAEDLALMKPTALLVNTSRGPLVDEGALLAALRAGRIAGAALDVFDVE 263

Query: 316 PFDPNDPILKFKNVLITPHVGGVTEHSYRSM-AKVVGDVA 354
           P   + P+    NVL+TPH+G VTE +Y     + V ++A
Sbjct: 264 PLPADHPLRGLPNVLLTPHIGYVTEEAYEGFYGQAVENIA 303

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 308

>gnl|CDD|240633 cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase

 Score =  150 bits (381), Expect = 9e-43
 Identities = 77/267 (28%), Positives = 126/267 (47%), Gaps = 30/267 (11%)

Query: 88  MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 147
             L +  I+    ++LI  FGVG +G+D++AA   GI+V   PG         A+L + L
Sbjct: 52  TGLSAALIAALPALELIASFGVGYDGIDLDAARARGIRVTNTPGV---LTDDVADLAVGL 108

Query: 148 MLGLLRK--QNEMRMAIEQK--KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKI 203
           +L +LR+    + R     +  K   P    + GK V I+G G IG  +A+RL  FG++I
Sbjct: 109 LLAVLRRIPAAD-RFVRAGRWPKGAFPLTRKVSGKRVGIVGLGRIGRAIARRLEAFGMEI 167

Query: 204 IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQT 263
                ++                       V  +  +  + E A+++DV+V        T
Sbjct: 168 -----AYHGRRPK---------------PDVPYR-YYASLLELAAESDVLVVACPGGPAT 206

Query: 264 AGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPI 323
             +VN   L ++    +LVN+ARG ++D  A+   L+ G + G G+DV   EP  P   +
Sbjct: 207 RHLVNAEVLEALGPDGVLVNVARGSVVDEAALIAALQEGRIAGAGLDVFENEPNVP-AAL 265

Query: 324 LKFKNVLITPHVGGVTEHSYRSMAKVV 350
           L   NV++TPH+   T  + R+M  +V
Sbjct: 266 LDLDNVVLTPHIASATVETRRAMGDLV 292

Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 301

>gnl|CDD|215893 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain

 Score =  147 bits (372), Expect = 2e-41
 Identities = 79/333 (23%), Positives = 133/333 (39%), Gaps = 40/333 (12%)

Query: 50  HNYTKEYLQNYPSIQV-DVVPISDVPDVIANYH-LCVVKTMRLDSNCISRANQMKLIMQF 107
                E L+    ++V D +   ++ +   +   L V  T  + +  +  A  +K+I + 
Sbjct: 8   RPEELELLKEGGEVEVHDELLTEELLEAAKDADALIVRSTTPVTAEVLEAAPGLKVIARR 67

Query: 108 GVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKL 167
           GVG++ +D++AAT  GI V  +PG    +  S AELT+ L+L L R+  E   A    + 
Sbjct: 68  GVGVDNIDLDAATERGILVTNVPG---YSTESVAELTVGLILALARRIPE---ADASVRA 121

Query: 168 GV-----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSA 222
           G      P G  L GKT+ ++G G IG   A   +  G+ ++                  
Sbjct: 122 GDWKKGGPIGLELYGKTLGVIGGGGIGGIGAAIAKALGMGVV------------------ 163

Query: 223 LAVKNGIIDDLVDEKGCHEDIFEFASKA-----DVVVCCLSLNKQTAGIVNKSFLSSMKK 277
            A       +  +E G    + +          D++        +T  I+       +K 
Sbjct: 164 -AYDPYPNPERAEEGGVEVLLLDLLLLDLKESDDLINLAPPTTMKTGHIIINEARGMLKD 222

Query: 278 GSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGG 337
              + N   GG+++  A+   LE G        V    P   N P+L   NV++TPH+ G
Sbjct: 223 AVAINNARGGGVIEEAALDALLEEGIAAAALDVVEEEPP-PVNSPLLDLPNVILTPHIAG 281

Query: 338 VTEHSYRSMAKVVGDVALQLHAGTPLTGLEFVN 370
            TE +  +MA+   +  L    G        VN
Sbjct: 282 ATEEAQENMAEEAAENLLAFLKGGTPPNA--VN 312

This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain. Length = 312

>gnl|CDD|240639 cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  146 bits (371), Expect = 3e-41
 Identities = 77/257 (29%), Positives = 124/257 (48%), Gaps = 36/257 (14%)

Query: 89  RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM 148
            LD+  +++   +KLI     G   VD+ AA   GI V  +PG  T    S A+ T  L+
Sbjct: 54  VLDAEVLAQLPNLKLIGVLATGYNNVDLAAAKERGITVTNVPGYST---DSVAQHTFALL 110

Query: 149 LGLLRKQNEMRMAIEQKK---------LGVPTGETLLGKTVFILGFGNIGVELAKRLRPF 199
           L L R        ++  +            P  E L GKT+ I+G+GNIG  +A+  R F
Sbjct: 111 LALARLVAYHNDVVKAGEWQKSPDFCFWDYPIIE-LAGKTLGIIGYGNIGQAVARIARAF 169

Query: 200 GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSL 259
           G+K++  +R                    + +  V      +++     ++DV+     L
Sbjct: 170 GMKVLFAERK---------------GAPPLREGYVS----LDELLA---QSDVISLHCPL 207

Query: 260 NKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDP 319
             +T  ++N   L+ MK G++L+N ARGGL+D +A+A  L  G + G G+DV   EP   
Sbjct: 208 TPETRNLINAEELAKMKPGAILINTARGGLVDEQALADALNSGKIAGAGLDVLSQEPPRA 267

Query: 320 NDPILKF-KNVLITPHV 335
           ++P+LK   N++ITPH+
Sbjct: 268 DNPLLKAAPNLIITPHI 284

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine yydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 307

>gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed

 Score =  143 bits (363), Expect = 7e-40
 Identities = 86/292 (29%), Positives = 146/292 (50%), Gaps = 34/292 (11%)

Query: 68  VPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVA 127
           V +  V DV A   L  + + R+D      A +++++  + VG + +D+  ATR GI V 
Sbjct: 38  VLLEKVRDVDA---LVTMLSERIDCEVFEAAPRLRIVANYAVGYDNIDVEEATRRGIYVT 94

Query: 128 RIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAI---EQKKLGVP------TGETLLGK 178
             PG +T  A   A+    L+L   R+  E    +   E K+ GV        G  + GK
Sbjct: 95  NTPGVLT-EAT--ADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGK 151

Query: 179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG 238
           T+ I+GFG IG  +A+R + FG++I+   R+    ++       L  +   +++L+ E  
Sbjct: 152 TIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAE-----KELGAEYRPLEELLRE-- 204

Query: 239 CHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHY 298
                      +D V   + L K+T  ++N+  L  MK  ++LVN ARG ++D +A+   
Sbjct: 205 -----------SDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKA 253

Query: 299 LECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVV 350
           L+ G + G G+DV   EP+  N+ +   KNV++ PH+G  T  +   MA++V
Sbjct: 254 LKEGWIAGAGLDVFEEEPY-YNEELFSLKNVVLAPHIGSATFEAREGMAELV 304

Length = 333

>gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score =  142 bits (360), Expect = 2e-39
 Identities = 95/295 (32%), Positives = 140/295 (47%), Gaps = 44/295 (14%)

Query: 76  VIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTG 135
           +IAN        M L    I     +K+I     G++ VD+ A    GI V+        
Sbjct: 53  MIAN--------MPLPGEVIEACKNLKMISVAFTGVDHVDLEACKERGITVS-------- 96

Query: 136 NAA-----SCAELTIYLMLGLLRK--QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNI 188
           NAA     + AELTI L + LLR     +  +     K G+  G  L GKTV I+G G I
Sbjct: 97  NAAGYSTEAVAELTIGLAIDLLRNIVPCDAAVRAGGTKAGL-IGRELAGKTVGIVGTGAI 155

Query: 189 GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS 248
           G+ +A+  + FG K++A  RS                K       ++    +  + E  +
Sbjct: 156 GLRVARLFKAFGCKVLAYSRS---------------EKEEAKALGIE----YVSLDELLA 196

Query: 249 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLG 308
           ++D+V   L LN +T G++ K  L+ MK+ ++L+N ARG ++D EA+A  L  G + G G
Sbjct: 197 ESDIVSLHLPLNDETKGLIGKEKLALMKESAILINTARGPVVDNEALADALNEGKIAGAG 256

Query: 309 IDVAWTEPFDPND-PILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTP 362
           IDV   EP  P D P+L   N ++TPHV   TE +    A++V D      AG P
Sbjct: 257 IDVFDMEPPLPADYPLLHAPNTILTPHVAFATEEAMEKRAEIVFDNIEAWLAGKP 311

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315

>gnl|CDD|240656 cd12179, 2-Hacid_dh_14, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  139 bits (353), Expect = 1e-38
 Identities = 93/314 (29%), Positives = 145/314 (46%), Gaps = 57/314 (18%)

Query: 63  IQVDVVPIS---DVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGVDINA 118
            +VD  P     ++  +I  Y   ++++   +D   I +A  +K I + G GLE +D+  
Sbjct: 21  FEVDYDPTISREEILAIIPQYDGLIIRSRFPIDKEFIEKATNLKFIARAGAGLENIDLEY 80

Query: 119 ATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQN----EMRMAI---EQKKLGVPT 171
           A   GI++   P    GN  +  E  + ++L L  K N    E+R  I   E  +     
Sbjct: 81  AKEKGIELFNAP---EGNRDAVGEHALGMLLALFNKLNRADQEVRNGIWDREGNR----- 132

Query: 172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA----TKRSWASHSQVSCQSSALAVKN 227
           G  L+GKTV I+G+GN+G   AKRL  FG K+IA         A   QVS          
Sbjct: 133 GVELMGKTVGIIGYGNMGKAFAKRLSGFGCKVIAYDKYKNFGDAYAEQVSL--------- 183

Query: 228 GIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG 287
                        E +F+   +AD++   + L  +T G+VNK F+SS KK    +N ARG
Sbjct: 184 -------------ETLFK---EADILSLHIPLTPETRGMVNKEFISSFKKPFYFINTARG 227

Query: 288 GLLDYEAIAHYLECGHLGGLGIDVAWTEPF----DPNDP-----ILKFKNVLITPHVGGV 338
            ++  + +   L+ G + G  +DV   E        N P     ++K   V++TPH+ G 
Sbjct: 228 KVVVTKDLVKALKSGKILGACLDVLEYEKASFESIFNQPEAFEYLIKSPKVILTPHIAGW 287

Query: 339 TEHSYRSMAKVVGD 352
           T  SY  +A+V+ D
Sbjct: 288 TFESYEKIAEVLVD 301

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase

 Score =  139 bits (352), Expect = 2e-38
 Identities = 81/268 (30%), Positives = 120/268 (44%), Gaps = 32/268 (11%)

Query: 82  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 141
           L      R+D++ +    ++K+I     G +  D+ A T  GI V  +P  +T      A
Sbjct: 48  LMAFMPDRIDADFLDACPRLKIIACALKGYDNFDVEACTARGIWVTIVPDLLT---EPTA 104

Query: 142 ELTIYLMLGLLRKQNEMRMAIEQKKLG--VPT--GETLLGKTVFILGFGNIGVELAKRLR 197
           ELTI L++GL R        +   K G   P   G  L GKTV ILG G +G  +A+RL 
Sbjct: 105 ELTIGLLIGLGRHILAGDRFVRSGKFGGWRPKFYGTGLDGKTVGILGMGALGRAIARRLS 164

Query: 198 PFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL 257
            FG  ++     +  H     +  AL ++   +D+L+               +D +V  L
Sbjct: 165 GFGATLLY----YDPHPLDQAEEQALNLRRVELDELL-------------ESSDFLVLAL 207

Query: 258 SLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE-- 315
            L   T  ++N   L+ MK G+LLVN  RG ++D  A+A  L+ GHLGG   DV   E  
Sbjct: 208 PLTPDTLHLINAEALAKMKPGALLVNPCRGSVVDEAAVAEALKSGHLGGYAADVFEMEDW 267

Query: 316 -----PFDPNDPILKFK-NVLITPHVGG 337
                P      +L      + TPH+G 
Sbjct: 268 ARPDRPRSIPQELLDQHDRTVFTPHIGS 295

Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain. Length = 318

>gnl|CDD|240636 cd12159, 2-Hacid_dh_2, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  138 bits (351), Expect = 2e-38
 Identities = 73/231 (31%), Positives = 100/231 (43%), Gaps = 19/231 (8%)

Query: 137 AASCAELTIYLMLGLLRKQNEMRMAIE-QKKLGVPTGETLLGKTVFILGFGNIGVELAKR 195
           A + AE  + L+L  LR+      A              L G TV I+G G IG  L   
Sbjct: 84  AETVAEHALALLLAGLRQLPARARATTWDPAEEDDLVTLLRGSTVAIVGAGGIGRALIPL 143

Query: 196 LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 255
           L PFG K+IA  RS                  G   +  DE    + + E    AD VV 
Sbjct: 144 LAPFGAKVIAVNRS------------------GRPVEGADETVPADRLDEVWPDADHVVL 185

Query: 256 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE 315
              L  +T  +V+ + L++MK  + LVN+ARG L+D +A+   L  G + G  +DV   E
Sbjct: 186 AAPLTPETRHLVDAAALAAMKPHAWLVNVARGPLVDTDALVDALRSGEIAGAALDVTDPE 245

Query: 316 PFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL 366
           P     P+    N LITPHV    E     +A+ V +      AG PL G+
Sbjct: 246 PLPDGHPLWSLPNALITPHVANTPEVIRPLLAERVAENVRAFAAGEPLLGV 296

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 303

>gnl|CDD|240627 cd05302, FDH, NAD-dependent Formate Dehydrogenase (FDH)

 Score =  137 bits (348), Expect = 2e-37
 Identities = 88/253 (34%), Positives = 127/253 (50%), Gaps = 31/253 (12%)

Query: 95  ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTG-NAASCAELTIYLMLGLLR 153
           I++A  +KL +  G+G + VD+ AA   GI VA    +VTG N  S AE  + ++L L+R
Sbjct: 79  IAKAKNLKLALTAGIGSDHVDLQAANDRGITVA----EVTGSNVVSVAEHVVMMILILVR 134

Query: 154 K-QNEMRMAIEQK----KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR 208
                   AIE       +     + L GKTV  +G G IG+ + +RL+PF V ++   R
Sbjct: 135 NYVPGHEQAIEGGWNVADVVKRAYD-LEGKTVGTVGAGRIGLRVLRRLKPFDVHLLYYDR 193

Query: 209 SWASHSQVSCQSSALAVKNGIIDDLVDEKGC--HEDIFEFASKADVVVCCLSLNKQTAGI 266
                             + + +++  E G   H D+ +  SK DVV     L+ +T G+
Sbjct: 194 ------------------HRLPEEVEKELGLTRHADLEDMVSKCDVVTINCPLHPETEGL 235

Query: 267 VNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKF 326
            NK  LS MKKG+ LVN ARG + D EA+A  LE GHL G   DV + +P   + P    
Sbjct: 236 FNKELLSKMKKGAYLVNTARGKICDREAVAEALESGHLAGYAGDVWFPQPAPKDHPWRTM 295

Query: 327 KNVLITPHVGGVT 339
            N  +TPH+ G T
Sbjct: 296 PNNAMTPHISGTT 308

NAD-dependent formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of a formate anion to carbon dioxide coupled with the reduction of NAD+ to NADH. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family have 2 highly similar subdomains of the alpha/beta form, with NAD binding occurring in the cleft between subdomains. NAD contacts are primarily to the Rossmann-fold NAD-binding domain which is inserted within the linear sequence of the more diverse flavodoxin-like catalytic subdomain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production from C1 compounds such as methanol, and in the stress responses of plants. NAD-dependent FDH is useful in cofactor regeneration in asymmetrical biocatalytic reduction processes, where FDH irreversibly oxidizes formate to carbon dioxide, while reducing the oxidized form of the cofactor to the reduced form. Length = 348

>gnl|CDD|240651 cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  133 bits (338), Expect = 2e-36
 Identities = 76/269 (28%), Positives = 125/269 (46%), Gaps = 41/269 (15%)

Query: 98  ANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK--- 154
           A  +K I + G G+  +D++AA++ GI V   PG    NA + AEL I +ML L R    
Sbjct: 48  APSLKAIARAGAGVNNIDVDAASKRGIVVFNTPG---ANANAVAELVIAMMLALSRNIIQ 104

Query: 155 ---------QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 205
                     +++   +E+ K      E L GKT+ ++G GNIG  +A      G+K+I 
Sbjct: 105 AIKWVTNGDGDDISKGVEKGKKQFVGTE-LRGKTLGVIGLGNIGRLVANAALALGMKVIG 163

Query: 206 TKRSWASHSQVSCQSSALAVKNGII--DDLVDEKGCHEDIFEFASKADVVVCCLSLNKQT 263
                     +S ++ A  +   +     L       E++    + AD +   + L  +T
Sbjct: 164 YDPY------LSVEA-AWKLSVEVQRVTSL-------EELL---ATADYITLHVPLTDET 206

Query: 264 AGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPI 323
            G++N   L+ MK G++L+N ARG ++D EA+   L+ G LGG  +       F     +
Sbjct: 207 RGLINAELLAKMKPGAILLNFARGEIVDEEALLEALDEGKLGG-YVTD-----FPEPALL 260

Query: 324 LKFKNVLITPHVGGVTEHSYRSMAKVVGD 352
               NV+ TPH+G  TE +  + A +   
Sbjct: 261 GHLPNVIATPHLGASTEEAEENCAVMAAR 289

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 305

>gnl|CDD|240644 cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  134 bits (339), Expect = 2e-36
 Identities = 76/252 (30%), Positives = 115/252 (45%), Gaps = 26/252 (10%)

Query: 118 AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQ-KKLGVPT---GE 173
           A    GI V     D   NA   AE T+  +L  LR+      A    +  G PT   G 
Sbjct: 90  AVWERGILVTS-AADA--NAEPVAEFTLAAILLALRRIPRFAAAYRAGRDWGWPTRRGGR 146

Query: 174 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDL 233
            L G+TV I+GFG IG  + + LRPFG++++     +   ++ +    AL V        
Sbjct: 147 GLYGRTVGIVGFGRIGRAVVELLRPFGLRVLVYDP-YLPAAEAA----ALGV-------- 193

Query: 234 VDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYE 293
             E    +++    +++DVV     L  +T G+++   L+ M+ G+  +N ARG L+D  
Sbjct: 194 --ELVSLDELL---ARSDVVSLHAPLTPETRGMIDARLLALMRDGATFINTARGALVDEA 248

Query: 294 AIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDV 353
           A+   L  G L    +DV   EP  P+ P+    NVL+TPH+ G T    R +     D 
Sbjct: 249 ALLAELRSGRLRAA-LDVTDPEPLPPDSPLRTLPNVLLTPHIAGSTGDERRRLGDYALDE 307

Query: 354 ALQLHAGTPLTG 365
             +  AG PL  
Sbjct: 308 LERFLAGEPLLH 319

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 330

>gnl|CDD|240643 cd12166, 2-Hacid_dh_7, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  133 bits (336), Expect = 3e-36
 Identities = 78/248 (31%), Positives = 111/248 (44%), Gaps = 36/248 (14%)

Query: 126 VARIPGDVT-GNA-----ASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKT 179
           +  +P  VT  NA     AS AEL + L+L  LR       A  + +       +L  + 
Sbjct: 75  LPLLPEGVTLCNARGVHDASTAELAVALILASLRGLPRFVRAQARGRWEPRRTPSLADRR 134

Query: 180 VFILGFGNIGVELAKRLRPFGVKIIATKRS----WASHSQVSCQSSALAVKNGIIDDLVD 235
           V I+G+G+IG  + +RL PF V++    R+       H                ID+L  
Sbjct: 135 VLIVGYGSIGRAIERRLAPFEVRVTRVARTARPGEQVHG---------------IDELP- 178

Query: 236 EKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAI 295
                        +ADVVV  + L  +T G+V+  FL+ M  G+LLVN+ARG ++D +A+
Sbjct: 179 ---------ALLPEADVVVLIVPLTDETRGLVDAEFLARMPDGALLVNVARGPVVDTDAL 229

Query: 296 AHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVAL 355
              L  G L    +DV   EP  P  P+     VLITPHVGG T         +V     
Sbjct: 230 VAELASGRL-RAALDVTDPEPLPPGHPLWSAPGVLITPHVGGATPAFLPRAYALVRRQLR 288

Query: 356 QLHAGTPL 363
           +  AG PL
Sbjct: 289 RYAAGEPL 296

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 300

>gnl|CDD|240620 cd01619, LDH_like, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score =  132 bits (335), Expect = 6e-36
 Identities = 79/339 (23%), Positives = 137/339 (40%), Gaps = 60/339 (17%)

Query: 37  TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHL-------CVVKTMR 89
            +VL    +        KE L+      VDV  ++ + +      L           T +
Sbjct: 1   MKVLIYD-YRDDELEIEKEILKAGG---VDVEIVTYLLNDDETAELAKGADAILTAFTDK 56

Query: 90  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 149
           +D+  + +A  +K I     G + +D++ A   GI V  +P        + AE TI L+L
Sbjct: 57  IDAELLDKAPGLKFISLRATGYDNIDLDYAKELGIGVTNVPEYSPN---AVAEHTIALIL 113

Query: 150 GLLRKQ--NEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 207
            LLR +   + R   +  +     G  L  +TV ++G G IG  +A+R + FG+K+IA  
Sbjct: 114 ALLRNRKYIDERDKNQDLQDAGVIGRELEDQTVGVVGTGKIGRAVAQRAKGFGMKVIAY- 172

Query: 208 RSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK------ADVVVCCLSLNK 261
                                   D        +   ++ S       +D++   + L  
Sbjct: 173 ------------------------DPFRNPELEDKGVKYVSLEELFKNSDIISLHVPLTP 208

Query: 262 QTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE------ 315
           +   ++N+     MKKG +++N ARG L+D EA+   L+ G + G G+DV   E      
Sbjct: 209 ENHHMINEEAFKLMKKGVIIINTARGSLVDTEALIEALDSGKIFGAGLDVLEDETPDLLK 268

Query: 316 -------PFDPNDPILKFKNVLITPHVGGVTEHSYRSMA 347
                      N  + +  NV+ITPH    T+ + ++M 
Sbjct: 269 DLEGEIFKDALNALLGRRPNVIITPHTAFYTDDALKNMV 307

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. D-HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. Similar to the structurally distinct L-HicDH, D-HicDH exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 323

>gnl|CDD|240632 cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family

 Score =  129 bits (327), Expect = 9e-35
 Identities = 71/253 (28%), Positives = 125/253 (49%), Gaps = 32/253 (12%)

Query: 95  ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK 154
           +++   +K I  +  G++ + +    + GI +    G    ++   AE  +  +L + + 
Sbjct: 55  LAKMKNLKWIQLYSAGVDYLPLEYIKKKGILLTNNSG---IHSIPIAEWIVGYILEIYKG 111

Query: 155 QNEMRMAIEQKK----LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 210
              ++ A + +K        +   L GKT+  LG G+IG E+AKRL+ FG+K+I    S 
Sbjct: 112 ---LKKAYKNQKEKKWKMDSSLLELYGKTILFLGTGSIGQEIAKRLKAFGMKVIGVNTS- 167

Query: 211 ASHSQVSCQSSALAVKNGIIDDLVDEKGCH--EDIFEFASKADVVVCCLSLNKQTAGIVN 268
                            G   +  D+  C+  E++ E   +AD+VV  L L ++T  + +
Sbjct: 168 -----------------GRDVEYFDK--CYPLEELDEVLKEADIVVNVLPLTEETHHLFD 208

Query: 269 KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKN 328
           ++F   MKKG+L +N+ RG  +D +A+   L+   + G  +DV   EP   + P+    N
Sbjct: 209 EAFFEQMKKGALFINVGRGPSVDEDALIEALKNKQIRGAALDVFEEEPLPKDSPLWDLDN 268

Query: 329 VLITPHVGGVTEH 341
           VLITPH+ GV+EH
Sbjct: 269 VLITPHISGVSEH 281

Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|178684 PLN03139, PLN03139, formate dehydrogenase; Provisional

 Score =  121 bits (306), Expect = 2e-31
 Identities = 82/252 (32%), Positives = 121/252 (48%), Gaps = 29/252 (11%)

Query: 95  ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTG-NAASCAELTIYLMLGLLR 153
           I +A  ++L++  G+G + +D+ AA   G+ VA    +VTG N  S AE  +  +L LLR
Sbjct: 116 IKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVA----EVTGSNVVSVAEDELMRILILLR 171

Query: 154 K-QNEMRMAI--EQKKLGVPT-GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 209
                    +  E    G+      L GKTV  +G G IG  L +RL+PF   ++   R 
Sbjct: 172 NFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDR- 230

Query: 210 WASHSQVSCQSSALAVKNGIIDDLVDEKGC--HEDIFEFASKADVVVCCLSLNKQTAGIV 267
                              +  +L  E G    ED+     K DVVV    L ++T G+ 
Sbjct: 231 -----------------LKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMF 273

Query: 268 NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFK 327
           NK  ++ MKKG L+VN ARG ++D +A+A     GH+GG G DV + +P   + P     
Sbjct: 274 NKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMP 333

Query: 328 NVLITPHVGGVT 339
           N  +TPH+ G T
Sbjct: 334 NHAMTPHISGTT 345

Length = 386

>gnl|CDD|240663 cd12187, LDH_like_1, D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains

 Score =  118 bits (299), Expect = 1e-30
 Identities = 78/281 (27%), Positives = 126/281 (44%), Gaps = 51/281 (18%)

Query: 82  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 141
           + V    RLD+  + +  ++KLI     G + +D+ A    GI V  +P    G A + A
Sbjct: 45  ISVFVYSRLDAEVLEKLPRLKLIATRSTGFDHIDLEACRERGIAVCNVPD--YGEA-TVA 101

Query: 142 ELTIYLMLGLLRKQNEM-----RMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL 196
           E    L+L L RK  E      R    Q  L    G  L GKT+ ++G G IG  +A+  
Sbjct: 102 EHAFALLLALSRKLREAIERTRRGDFSQAGL---RGFELAGKTLGVVGTGRIGRRVARIA 158

Query: 197 RPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC-HEDIFEFASKADVVVC 255
           R FG+K++A                   V +   ++L +  G  +  + E   ++D++  
Sbjct: 159 RGFGMKVLAYDV----------------VPD---EELAERLGFRYVSLEELLQESDIISL 199

Query: 256 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV---- 311
            +    QT  ++N+   + MK G++L+N ARG ++D EA+   L+ G L G G+DV    
Sbjct: 200 HVPYTPQTHHLINRENFALMKPGAVLINTARGAVVDTEALVRALKEGKLAGAGLDVLEQE 259

Query: 312 --------AWTEPFDP--------NDPILKFKNVLITPHVG 336
                    + E   P        +  +L+  NV+ITPHV 
Sbjct: 260 EVLREEAELFREDVSPEDLKKLLADHALLRKPNVIITPHVA 300

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|240653 cd12176, PGDH_3, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  116 bits (292), Expect = 8e-30
 Identities = 84/298 (28%), Positives = 136/298 (45%), Gaps = 52/298 (17%)

Query: 63  IQVDVVPIS----DVPDVIANYHLCVV--KTMRLDSNCISRANQMKLIMQFGVGLEGVDI 116
           I+V+ +  +    ++ + + + HL  +  KT +L    +  A ++  I  F +G   VD+
Sbjct: 22  IEVERLKGALDEDELIEALKDVHLLGIRSKT-QLTEEVLEAAPKLLAIGCFCIGTNQVDL 80

Query: 117 NAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR----KQNEMRMAIEQKKLGVPTG 172
           +AA + GI V   P     N  S AEL I  ++ L R    +       I  K     TG
Sbjct: 81  DAAAKRGIPVFNAP---FSNTRSVAELVIGEIIMLARRLPDRNAAAHRGIWNK---SATG 134

Query: 173 --ETLLGKTVFILGFGNIGVELAKRLRPFGVKI----IATKRSWASHSQVSCQSSALAVK 226
             E + GKT+ I+G+G+IG +L+      G+++    IA K    +  QVS     LA  
Sbjct: 135 SHE-VRGKTLGIIGYGHIGSQLSVLAEALGMRVIFYDIAEKLPLGNARQVSSLEELLA-- 191

Query: 227 NGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR 286
                                 +AD V   +     T  ++    ++ MKKG++L+N +R
Sbjct: 192 ----------------------EADFVTLHVPATPSTKNMIGAEEIAQMKKGAILINASR 229

Query: 287 GGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPND----PILKFKNVLITPHVGGVTE 340
           G ++D +A+A  L  GHL G  +DV   EP    +    P+    NV++TPH+GG TE
Sbjct: 230 GTVVDIDALAEALRSGHLAGAAVDVFPEEPASNGEPFSSPLQGLPNVILTPHIGGSTE 287

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional

 Score =  117 bits (295), Expect = 1e-29
 Identities = 82/253 (32%), Positives = 118/253 (46%), Gaps = 31/253 (12%)

Query: 95  ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTG-NAASCAELTIYLMLGLLR 153
           I++A  +KL +  G+G + VD+ AA+  GI VA    +VTG N+ S AE  + ++L L+R
Sbjct: 109 IAKAPNLKLAITAGIGSDHVDLQAASEHGITVA----EVTGSNSISVAEHVVMMILALVR 164

Query: 154 KQNEMRMAIEQKKLG-------VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT 206
                  +  Q   G       V     L G TV I+G G IG+ + +RL+PF VK+  T
Sbjct: 165 NYEP---SHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYT 221

Query: 207 KRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGI 266
            R    H         L +              H       S  DVV     L+ +T  +
Sbjct: 222 DR----HRLPEEVEQELGLTY------------HVSFDSLVSVCDVVTIHCPLHPETEHL 265

Query: 267 VNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKF 326
            +   LS MK+GS LVN ARG ++D +A+   LE GHL G   DV + +P   + P    
Sbjct: 266 FDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTM 325

Query: 327 KNVLITPHVGGVT 339
               +TPH+ G T
Sbjct: 326 PRNGMTPHISGTT 338

Length = 385

>gnl|CDD|240641 cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score =  114 bits (289), Expect = 2e-29
 Identities = 71/271 (26%), Positives = 112/271 (41%), Gaps = 35/271 (12%)

Query: 102 KLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMA 161
           K I   G G++ +  +      + + R+     G A   AE   Y++  +LR   +M   
Sbjct: 60  KAIFSLGAGVDHLLADPDLP-DVPIVRLVDP--GLAQGMAE---YVLAAVLRLHRDMDRY 113

Query: 162 IEQ------KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQ 215
             Q      K L            V +LG G +G  +A+RL   G  +    RS      
Sbjct: 114 AAQQRRGVWKPLPQRPAAER---RVGVLGLGELGAAVARRLAALGFPVSGWSRSPKDIEG 170

Query: 216 VSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSM 275
           V+C            + L            F ++ D++VC L L  +T GI+N   L+ +
Sbjct: 171 VTCFHGE--------EGLDA----------FLAQTDILVCLLPLTPETRGILNAELLARL 212

Query: 276 KKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHV 335
            +G+ L+N+ RG  L    +   L+ GHL G  +DV   EP   + P+ +   V +TPH+
Sbjct: 213 PRGAALINVGRGPHLVEADLLAALDSGHLSGAVLDVFEQEPLPADHPLWRHPRVTVTPHI 272

Query: 336 GGVTEHSYRSMAKVVGDVALQLHAGTPLTGL 366
             +T     S A  V +   +L AG PL  L
Sbjct: 273 AAIT--DPDSAAAQVAENIRRLEAGEPLPNL 301

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|240661 cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains

 Score =  114 bits (289), Expect = 2e-29
 Identities = 73/253 (28%), Positives = 116/253 (45%), Gaps = 39/253 (15%)

Query: 109 VGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEM--RMAIEQKK 166
           +G + +D++AA   GIKV     +VT +  S A+ T+ LML  LRK  ++  R  +    
Sbjct: 77  IGYDHIDLDAAKELGIKV----SNVTYSPNSVADYTVMLMLMALRKYKQIMKRAEVNDYS 132

Query: 167 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVK 226
           LG   G  L   TV ++G G IG  + K L  FG KI+A                     
Sbjct: 133 LGGLQGRELRNLTVGVIGTGRIGQAVIKNLSGFGCKILAYDPY----------------P 176

Query: 227 NGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR 286
           N  +    +    + D+     ++D++     L ++T  ++NK  ++ MK G +++N AR
Sbjct: 177 NEEVKKYAE----YVDLDTLYKESDIITLHTPLTEETYHLINKESIAKMKDGVIIINTAR 232

Query: 287 GGLLDYEAIAHYLECGHLGGLGIDVAWTE--------PFD--PNDPI---LKFKNVLITP 333
           G L+D EA+   LE G +GG  +DV   E          D   N  +     F NV++TP
Sbjct: 233 GELIDTEALIEGLESGKIGGAALDVIEGEDGIYYNDRKGDILSNRELAILRSFPNVILTP 292

Query: 334 HVGGVTEHSYRSM 346
           H+   T+ +   M
Sbjct: 293 HMAFYTDQAVSDM 305

This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 322

>gnl|CDD|240662 cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains

 Score =  112 bits (282), Expect = 3e-28
 Identities = 70/269 (26%), Positives = 118/269 (43%), Gaps = 42/269 (15%)

Query: 98  ANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNE 157
              +K I     G++ +D++ A   G+K+  +P     +  + AE  +   L LLR   E
Sbjct: 66  EYGIKQIALRSAGVDMIDLDLAKENGLKITNVP---AYSPRAIAEFAVTQALNLLRNTPE 122

Query: 158 MRMAIEQKKLGVPTGETLLGK-----TVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 212
           +   + +       G  L+G+     TV I+G G IG   AK  + FG K+IA       
Sbjct: 123 IDRRVAKGDFRWAPG--LIGREIRDLTVGIIGTGRIGSAAAKIFKGFGAKVIAYDP---- 176

Query: 213 HSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFL 272
                         N  ++  +      ED+     +AD++   + L K+   ++N    
Sbjct: 177 ------------YPNPELEKFLLYYDSLEDLL---KQADIISLHVPLTKENHHLINAEAF 221

Query: 273 SSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE-PFDPN--------DPI 323
           + MK G++LVN ARGGL+D +A+   L+ G + G  +D    E  +           D +
Sbjct: 222 AKMKDGAILVNAARGGLVDTKALIDALDSGKIAGAALDTYENETGYFNKDWSGKEIEDEV 281

Query: 324 LK----FKNVLITPHVGGVTEHSYRSMAK 348
           LK      NVLITPH+   T+ + ++M +
Sbjct: 282 LKELIAMPNVLITPHIAFYTDTAVKNMVE 310

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|180588 PRK06487, PRK06487, glycerate dehydrogenase; Provisional

 Score =  109 bits (274), Expect = 3e-27
 Identities = 81/305 (26%), Positives = 130/305 (42%), Gaps = 45/305 (14%)

Query: 70  ISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARI 129
           +      I+N      K   LD+  ++ A Q+KLI+    G   VD+ AA   GI V   
Sbjct: 43  LRGAQVAISN------KVA-LDAAALAAAPQLKLILVAATGTNNVDLAAARERGITVCNC 95

Query: 130 PGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKK---------LGVPTGETLLGKTV 180
            G  T    S A+ T+ L+L L  +  + + A+   +         L  P  E L GKT+
Sbjct: 96  QGYGT---PSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVE-LEGKTL 151

Query: 181 FILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCH 240
            +LG G +G  +A+    FG++++              +   L +               
Sbjct: 152 GLLGHGELGGAVARLAEAFGMRVLI-----GQLPGRPARPDRLPLD-------------- 192

Query: 241 EDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE 300
               E   + D +     L + T  ++    L+ MK G+LL+N ARGGL+D +A+A  L 
Sbjct: 193 ----ELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALR 248

Query: 301 CGHLGGLGIDVAWTEPFDPNDPIL--KFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLH 358
            GHLGG   DV   EP    +P+L      +++TPH    +  + + +   + + A    
Sbjct: 249 SGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQRIVGQLAENARAFF 308

Query: 359 AGTPL 363
           AG PL
Sbjct: 309 AGKPL 313

Length = 317

>gnl|CDD|240657 cd12180, 2-Hacid_dh_15, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  106 bits (266), Expect = 3e-26
 Identities = 63/233 (27%), Positives = 104/233 (44%), Gaps = 24/233 (10%)

Query: 136 NAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKR 195
            A + AE  +  +L   ++  E+ +   ++    P G +L G T+ I+GFG IG  LA+R
Sbjct: 95  AAEAIAEFVLAAILAAAKRLPEIWVKGAEQWRREPLG-SLAGSTLGIVGFGAIGQALARR 153

Query: 196 LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCH--EDIFEFASKADVV 253
               G++++A +RS                         D  G     D+ E  +++D +
Sbjct: 154 ALALGMRVLALRRS---------------------GRPSDVPGVEAAADLAELFARSDHL 192

Query: 254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW 313
           V    L  +T  ++N   L+  K G  L+NIARGGL+D EA+   L+ G +    +DV  
Sbjct: 193 VLAAPLTPETRHLINADVLAQAKPGLHLINIARGGLVDQEALLEALDSGRISLASLDVTD 252

Query: 314 TEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL 366
            EP     P+     V ++PH   +     R++A    +   +  AG PL  L
Sbjct: 253 PEPLPEGHPLYTHPRVRLSPHTSAIAPDGRRNLADRFLENLARYRAGQPLHDL 305

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 308

>gnl|CDD|240659 cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score =  103 bits (260), Expect = 3e-25
 Identities = 85/307 (27%), Positives = 132/307 (42%), Gaps = 67/307 (21%)

Query: 89  RLDSNCISR--ANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAAS---CAEL 143
            LD+  + +     +KLI     G   VD+ AA   GI V R+P      A S    AE 
Sbjct: 55  DLDAPVLEKLAELGVKLIALRCAGFNNVDLKAAKELGITVVRVP------AYSPYAVAEH 108

Query: 144 TIYLMLGLLRK----QNEMRM---AIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL 196
            + L+L L RK     N +R    +++    G+  G  L GKTV ++G G IG   A+ L
Sbjct: 109 AVALLLALNRKIHRAYNRVREGNFSLD----GL-LGFDLHGKTVGVIGTGKIGQAFARIL 163

Query: 197 RPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS------KA 250
           + FG +++A                          D        +   E+        ++
Sbjct: 164 KGFGCRVLAY-------------------------DPYPNPELAKLGVEYVDLDELLAES 198

Query: 251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGID 310
           D++     L  +T  ++N   ++ MK G +L+N +RGGL+D +A+   L+ G +GGLG+D
Sbjct: 199 DIISLHCPLTPETHHLINAETIAKMKDGVMLINTSRGGLIDTKALIEALKSGKIGGLGLD 258

Query: 311 VAWTEPF----DPNDPI---------LKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQL 357
           V   E      D +D I         L F NVLIT H    T+ +  ++A+   +     
Sbjct: 259 VYEEEAGLFFEDHSDEIIQDDVLARLLSFPNVLITGHQAFFTKEALTNIAETTLENLDDF 318

Query: 358 HAGTPLT 364
            AG PL 
Sbjct: 319 EAGKPLK 325

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 328

>gnl|CDD|240660 cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains

 Score =  102 bits (257), Expect = 8e-25
 Identities = 78/298 (26%), Positives = 121/298 (40%), Gaps = 65/298 (21%)

Query: 81  HLCVVKTMRLDSNCISRANQMKLIMQFG--------VGLEGVDINAATRCGIKVARIPGD 132
           H  V+    +  NC +    +++  ++G        VG   +D+ AA   G K+AR+P  
Sbjct: 45  HDAVI----VRGNCFADKENLEIYKEYGIKYVFTRTVGFNHIDLEAAKELGFKMARVPS- 99

Query: 133 VTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPT---GETLLGKTVFILGFGNIG 189
            + NA   AEL   L + L R           K   V      + +   TV I+G G IG
Sbjct: 100 YSPNAI--AELAFTLAMTLSRHTAYTASRTANKNFKVDPFMFSKEIRNSTVGIIGTGRIG 157

Query: 190 VELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS- 248
           +  AK  +  G K+I                           D+       +D+  F S 
Sbjct: 158 LTAAKLFKGLGAKVIGY-------------------------DIYPSDAA-KDVVTFVSL 191

Query: 249 -----KADVV-VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG 302
                K+D++ +    +  +   ++NK F+S MK G++L+N ARG L D EAI   LE G
Sbjct: 192 DELLKKSDIISLHVPYIKGKNDKLINKEFISKMKDGAILINTARGELQDEEAILEALESG 251

Query: 303 HLGGLGIDV------------AWTEPFDP--NDPILKFKNVLITPHVGGVTEHSYRSM 346
            L G G DV               +  DP     +  +  VL+TPH+G  T+ +  +M
Sbjct: 252 KLAGFGTDVLNNEKEIFFKDFDGDKIEDPVVEKLLDLYPRVLLTPHIGSYTDEALSNM 309

(R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 330

>gnl|CDD|240640 cd12163, 2-Hacid_dh_5, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  100 bits (251), Expect = 6e-24
 Identities = 59/220 (26%), Positives = 98/220 (44%), Gaps = 28/220 (12%)

Query: 141 AELTI--YLML--GLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL 196
           AE  I  +L+L    L+     +     ++    + E  +GK V ILG+G+IG + A+  
Sbjct: 93  AEWVIGTWLVLSHHFLQYIELQKEQTWGRRQEAYSVEDSVGKRVGILGYGSIGRQTARLA 152

Query: 197 RPFGVKIIATKRSWASHSQVSCQSSALAVKNGII-------DDLVDEKGCH----EDIFE 245
           +  G+++ A  RS     + + +S      +G I       D  +            + E
Sbjct: 153 QALGMEVYAYTRS----PRPTPES---RKDDGYIVPGTGDPDGSIPSAWFSGTDKASLHE 205

Query: 246 F-ASKADVVVCCLSLNKQTAGIVNK---SFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC 301
           F     D++V  L L   T  ++       L+  K+ + + NIARG L+D +A+   LE 
Sbjct: 206 FLRQDLDLLVVSLPLTPATKHLLGAEEFEILA--KRKTFVSNIARGSLVDTDALVAALES 263

Query: 302 GHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEH 341
           G + G  +DV   EP   + P+    NV+ITPHV   T+ 
Sbjct: 264 GQIRGAALDVTDPEPLPADHPLWSAPNVIITPHVSWQTQE 303

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 334

>gnl|CDD|240637 cd12160, 2-Hacid_dh_3, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 98.2 bits (245), Expect = 2e-23
 Identities = 66/208 (31%), Positives = 100/208 (48%), Gaps = 30/208 (14%)

Query: 141 AELTIYLMLGLLRKQNEMRMAIEQKK----LG-----VPTGE--TLLGKTVFILGFGNIG 189
           AE T+ L+L  +R+ +EMR A  + +    LG      P G   TLLG  V I GFG+IG
Sbjct: 96  AEHTLALILAAVRRLDEMREAQREHRWAGELGGLQPLRPAGRLTTLLGARVLIWGFGSIG 155

Query: 190 VELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK 249
             LA  L   G ++    RS                + G    +V E    +++ E   +
Sbjct: 156 QRLAPLLTALGARVTGVARS-------------AGERAGF--PVVAE----DELPELLPE 196

Query: 250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGI 309
            DV+V  L     TA  ++   L+++ K + +VN+ RG  +D +A+   LE G LGG  +
Sbjct: 197 TDVLVMILPATPSTAHALDAEVLAALPKHAWVVNVGRGATVDEDALVAALESGRLGGAAL 256

Query: 310 DVAWTEPFDPNDPILKFKNVLITPHVGG 337
           DV  TEP   + P+    N+++TPH  G
Sbjct: 257 DVTATEPLPASSPLWDAPNLILTPHAAG 284

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|236985 PRK11790, PRK11790, D-3-phosphoglycerate dehydrogenase; Provisional

 Score = 97.2 bits (243), Expect = 2e-22
 Identities = 75/255 (29%), Positives = 116/255 (45%), Gaps = 59/255 (23%)

Query: 107 FGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKK 166
           F +G   VD++AA + GI V   P     N  S AEL I  ++ LLR        I +K 
Sbjct: 82  FCIGTNQVDLDAAAKRGIPVFNAP---FSNTRSVAELVIGEIILLLRG-------IPEKN 131

Query: 167 LGVPTGETL---------LGKTVFILGFGNIGVELAKRLRPFGVKI----IATKRSWASH 213
                G             GKT+ I+G+G+IG +L+      G+++    I  K    + 
Sbjct: 132 AKAHRGGWNKSAAGSFEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLPLGNA 191

Query: 214 SQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSL----NKQTAGIVNK 269
            QV           G +++L+             +++DVV    SL       T  ++  
Sbjct: 192 RQV-----------GSLEELL-------------AQSDVV----SLHVPETPSTKNMIGA 223

Query: 270 SFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPND----PILK 325
             L+ MK G++L+N +RG ++D +A+A  L+ GHL G  IDV   EP    D    P+  
Sbjct: 224 EELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRG 283

Query: 326 FKNVLITPHVGGVTE 340
             NV++TPH+GG T+
Sbjct: 284 LDNVILTPHIGGSTQ 298

Length = 409

>gnl|CDD|235890 PRK06932, PRK06932, glycerate dehydrogenase; Provisional

 Score = 94.9 bits (236), Expect = 4e-22
 Identities = 73/306 (23%), Positives = 127/306 (41%), Gaps = 53/306 (17%)

Query: 44  PHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKL 103
           P FP  H +  EY        ++    +D+  VI +      K +      +++  ++KL
Sbjct: 21  PSFP--HEWI-EYDHTSAEQTIERAKDADI--VITS------KVL-FTRETLAQLPKLKL 68

Query: 104 IMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGL-------LRKQN 156
           I     G   VD+ AA   GI V  + G  +    +  E  + ++  L        R Q 
Sbjct: 69  IAITATGTNNVDLVAAKELGIAVKNVTGYSS---TTVPEHVLGMIFALKHSLMGWYRDQL 125

Query: 157 EMRMAIEQKKLGV---PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH 213
             R A   K+      P  + + G T+ + G G +G E+ +  +  G+K++  +   AS 
Sbjct: 126 SDRWA-TCKQFCYFDYPITD-VRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASV 183

Query: 214 SQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLS 273
               C+                         E   +AD+V     L + T  ++N   L+
Sbjct: 184 ----CREGYT------------------PFEEVLKQADIVTLHCPLTETTQNLINAETLA 221

Query: 274 SMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPIL----KFKNV 329
            MK  + L+N  RG L+D +A+   LE G + G  +DV   EP + ++P++    +  N+
Sbjct: 222 LMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNL 281

Query: 330 LITPHV 335
           LITPH+
Sbjct: 282 LITPHI 287

Length = 314

>gnl|CDD|181414 PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; Provisional

 Score = 93.1 bits (232), Expect = 2e-21
 Identities = 70/262 (26%), Positives = 121/262 (46%), Gaps = 46/262 (17%)

Query: 90  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 149
           +D   +S+   +KLI     G   VDI  A + GI V  + G  T    S A+ T  ++L
Sbjct: 53  IDKEVLSQLPNLKLICITATGTNNVDIEYAKKKGIAVKNVAGYST---ESVAQHTFAMLL 109

Query: 150 GLLRKQNEMRMAIEQKK---------LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFG 200
            LL + N     ++  +         +  P GE + GK   I+G G IG  +AK  + FG
Sbjct: 110 SLLGRINYYDRYVKSGEYSESPIFTHISRPLGE-IKGKKWGIIGLGTIGKRVAKIAQAFG 168

Query: 201 VKII----ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 256
            K++    + K     + +VS            +++L+               +D++   
Sbjct: 169 AKVVYYSTSGKNKNEEYERVS------------LEELL-------------KTSDIISIH 203

Query: 257 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEP 316
             LN++T  ++    L  +K G++L+N+ RGG+++ + +A  L+   +   G+DV   EP
Sbjct: 204 APLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDI-YAGLDVLEKEP 262

Query: 317 FDPNDPILKFKN---VLITPHV 335
            + N P+L  KN   +LITPH+
Sbjct: 263 MEKNHPLLSIKNKEKLLITPHI 284

Length = 311

>gnl|CDD|235800 PRK06436, PRK06436, glycerate dehydrogenase; Provisional

 Score = 90.7 bits (225), Expect = 1e-20
 Identities = 60/220 (27%), Positives = 95/220 (43%), Gaps = 30/220 (13%)

Query: 124 IKVARIPGDVT--GNAA----SCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLG 177
           I V+ IP +V    NA     S AE    L+L   +   E    ++         + L  
Sbjct: 63  IDVSGIPENVVLCSNAGAYSISVAEHAFALLLAWAKNICENNYNMKNGNFKQSPTKLLYN 122

Query: 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK 237
           K++ ILG+G IG  +A   + FG+ I A  RS+ +    S                    
Sbjct: 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVNDGISSIYMEP--------------- 167

Query: 238 GCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAH 297
              EDI +   K+D V+  L L  +T G++N   LS  +KG  ++N+AR  ++D   + +
Sbjct: 168 ---EDIMK---KSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLN 221

Query: 298 YLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGG 337
           +L   +      DV W EP    +      NV+++PHV G
Sbjct: 222 FLRNHNDKYYLSDVWWNEP-IITETNP--DNVILSPHVAG 258

Length = 303

>gnl|CDD|240635 cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains

 Score = 84.5 bits (210), Expect = 2e-18
 Identities = 71/262 (27%), Positives = 114/262 (43%), Gaps = 70/262 (26%)

Query: 110 GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV 169
           G + +D +     GI  A  PG    NA S AE   Y++  LL       +A  Q     
Sbjct: 67  GTDHIDTDYLKERGIGFANAPG---CNANSVAE---YVLSALLV------LAQRQ----- 109

Query: 170 PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGI 229
             G +L GKTV I+G GN+G  LA+RL   G+ ++             C           
Sbjct: 110 --GFSLKGKTVGIVGVGNVGSRLARRLEALGMNVLL------------C----------- 144

Query: 230 IDDLVDEKGCHEDIFEFAS------KADVVVCCLSLNKQ----TAGIVNKSFLSSMKKGS 279
            D    E    E    F S      +AD++   + L +     T  ++++ FL+++K G 
Sbjct: 145 -DPPRAEA---EGDPGFVSLEELLAEADIITLHVPLTRDGEHPTYHLLDEDFLAALKPGQ 200

Query: 280 LLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW-TEPFDPNDPILKFKNVLI-TPHVGG 337
           +L+N +RG ++D +A+   L+ G    + +DV W  EP + +  +L    V I TPH+ G
Sbjct: 201 ILINASRGAVIDNQALLALLQRGKDLRVVLDV-WENEP-EIDLELLDK--VDIATPHIAG 256

Query: 338 V--------TEHSYRSMAKVVG 351
                    TE  Y ++ + +G
Sbjct: 257 YSLEGKARGTEMIYEALCQFLG 278

D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 343

>gnl|CDD|185307 PRK15409, PRK15409, bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

 Score = 77.9 bits (192), Expect = 5e-16
 Identities = 66/269 (24%), Positives = 118/269 (43%), Gaps = 33/269 (12%)

Query: 89  RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM 148
           ++D+  + +  +++      VG +  D++A T   I +   P  +T    + A+  + L+
Sbjct: 55  KVDAALLEKMPKLRAASTISVGYDNFDVDALTARKILLMHTPTVLT---ETVADTLMALV 111

Query: 149 LGLLRKQNEMRMAIEQKKLGVPT--------GETLLGKTVFILGFGNIGVELAKRLR-PF 199
           L   R+  E+    E+ K G  T        G  +  KT+ I+G G IG+ LA+R    F
Sbjct: 112 LSTARRVVEV---AERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFGF 168

Query: 200 GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSL 259
            + I+   R    H +   + +A   +   +D L+ E             +D V   L L
Sbjct: 169 NMPILYNARR--HHKEAEERFNA---RYCDLDTLLQE-------------SDFVCIILPL 210

Query: 260 NKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDP 319
             +T  +      + MK  ++ +N  RG ++D  A+   L+ G +   G+DV   EP   
Sbjct: 211 TDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSV 270

Query: 320 NDPILKFKNVLITPHVGGVTEHSYRSMAK 348
           + P+L   NV+  PH+G  T  +  +MA 
Sbjct: 271 DSPLLSLPNVVAVPHIGSATHETRYNMAA 299

Length = 323

>gnl|CDD|177941 PLN02306, PLN02306, hydroxypyruvate reductase

 Score = 76.0 bits (187), Expect = 3e-15
 Identities = 69/261 (26%), Positives = 120/261 (45%), Gaps = 40/261 (15%)

Query: 107 FGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNE----MRMAI 162
             VG   VD+ AA + GI V   PG +T    + AEL   L L   R+  E    MR  +
Sbjct: 93  MAVGYNNVDVEAANKYGIAVGNTPGVLT---ETTAELAASLSLAAARRIVEADEFMRAGL 149

Query: 163 EQKKLGVPT---GETLLGKTVFILGFGNIGVELAKRL-RPFGVKII------ATK----- 207
            +  L  P    G  L G+TV ++G G IG   A+ +   F + +I      +T+     
Sbjct: 150 YEGWL--PHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFV 207

Query: 208 RSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIV 267
            ++    + + +      +   +++++ E             ADV+     L+K T  ++
Sbjct: 208 TAYGQFLKANGEQPVTWKRASSMEEVLRE-------------ADVISLHPVLDKTTYHLI 254

Query: 268 NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPF-DPNDPILKF 326
           NK  L+ MKK ++LVN +RG ++D  A+  +L+   +  +G+DV   EP+  P   +   
Sbjct: 255 NKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKPG--LADM 312

Query: 327 KNVLITPHVGGVTEHSYRSMA 347
           KN ++ PH+   ++ +   MA
Sbjct: 313 KNAVVVPHIASASKWTREGMA 333

Length = 386

>gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases

 Score = 75.0 bits (184), Expect = 3e-15
 Identities = 54/217 (24%), Positives = 93/217 (42%), Gaps = 32/217 (14%)

Query: 102 KLIMQFGVGLEGVDIN-AATRCGIKVARIPGDVTG----NAASCAELTIYLMLGLLRKQN 156
           +L+  + +G +  D+  A  R G+    + G        N+    EL++  +   L  Q 
Sbjct: 89  RLLFTYTIGADHRDLTEALARAGLTAIAVEGVELPLLTSNSIGAGELSVQFIARFLEVQQ 148

Query: 157 EMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQV 216
             R+       G P    + GKTV ++G G +G E A+ LR  G +++ T  +  +  Q+
Sbjct: 149 PGRLG------GAPD---VAGKTVVVVGAGVVGKEAAQMLRGLGAQVLITDINVEALEQL 199

Query: 217 SCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVN-KSFLSSM 275
                                   E++ E  ++ADV+V    L  + AGI+  +  +  M
Sbjct: 200 EELGGKNV----------------EELEEALAEADVIVTTTLLPGKRAGILVPEELVEQM 243

Query: 276 KKGSLLVNIARGGLLDYEAIAHY-LECGHLGGLGIDV 311
           K GS++VN+A G +   +A+    LE GH      DV
Sbjct: 244 KPGSVIVNVAVGAVGCVQALHTQLLEEGHGVVHYGDV 280

The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. Length = 310

>gnl|CDD|181499 PRK08605, PRK08605, D-lactate dehydrogenase; Validated

 Score = 73.2 bits (180), Expect = 1e-14
 Identities = 65/272 (23%), Positives = 115/272 (42%), Gaps = 45/272 (16%)

Query: 90  LDSNCISRANQM--KLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 147
           L        N++  K I Q   G +  D+  AT+  + ++ +P   + +  S AE T+  
Sbjct: 57  LSEAIYKLLNELGIKQIAQRSAGFDTYDLELATKYNLIISNVP---SYSPESIAEFTVTQ 113

Query: 148 MLGLLRKQNEMRMAIEQKKLGVPTGETLLGK-----TVFILGFGNIGVELAKRL-RPFGV 201
            + L+R  N+++  +  ++        +L +      V ++G G IG+ +AK   + +G 
Sbjct: 114 AINLVRHFNQIQTKV--REHDFRWEPPILSRSIKDLKVAVIGTGRIGLAVAKIFAKGYGS 171

Query: 202 KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNK 261
            ++A                     N      VD K   + I E    AD+V   +   K
Sbjct: 172 DVVAYD----------------PFPNAKAATYVDYK---DTIEEAVEGADIVTLHMPATK 212

Query: 262 QTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE-PFDP- 319
               + N       KKG++ VN ARG L+D +A+   L+ G + G  +D    E P  P 
Sbjct: 213 YNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPS 272

Query: 320 -------NDPILK----FKNVLITPHVGGVTE 340
                  NDP+L+     ++V++TPH+   T+
Sbjct: 273 DQRGQTINDPLLESLINREDVILTPHIAFYTD 304

Length = 332

>gnl|CDD|183550 PRK12480, PRK12480, D-lactate dehydrogenase; Provisional

 Score = 72.3 bits (177), Expect = 3e-14
 Identities = 59/263 (22%), Positives = 113/263 (42%), Gaps = 41/263 (15%)

Query: 101 MKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK--QNEM 158
           +K I Q   G +  D++ A +  I ++ +P   + +  + AE ++ + L L+R+    E 
Sbjct: 70  IKQIAQRTAGFDMYDLDLAKKHNIVISNVP---SYSPETIAEYSVSIALQLVRRFPDIER 126

Query: 159 RMAIEQKKLGVPTGET-LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVS 217
           R+               +   TV I+G G IG   AK    FG  I A   ++ +     
Sbjct: 127 RVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYD-AYPNKDL-- 183

Query: 218 CQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKK 277
                L  K+ + + + D              AD++   +  NK++  + +K+    +KK
Sbjct: 184 ---DFLTYKDSVKEAIKD--------------ADIISLHVPANKESYHLFDKAMFDHVKK 226

Query: 278 GSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV----------AWTEPFDPNDPIL--- 324
           G++LVN ARG +++   +   +  G L G  ID            WT   D +D  L   
Sbjct: 227 GAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNK-DIDDKTLLEL 285

Query: 325 -KFKNVLITPHVGGVTEHSYRSM 346
            + + +L+TPH+   ++ + +++
Sbjct: 286 IEHERILVTPHIAFFSDEAVQNL 308

Length = 330

>gnl|CDD|185366 PRK15469, ghrA, bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

 Score = 71.8 bits (176), Expect = 5e-14
 Identities = 55/189 (29%), Positives = 85/189 (44%), Gaps = 24/189 (12%)

Query: 179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG 238
           T+ ILG G +G ++A+ L+ +G  +    RS  S   V  QS A                
Sbjct: 138 TIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGV--QSFAGR-------------- 181

Query: 239 CHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHY 298
             E++  F S+  V++  L    +T GI+N+  L  +  G+ L+N+ARG  +  + +   
Sbjct: 182 --EELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAA 239

Query: 299 LECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKV--VGDVALQ 356
           L+ G + G  +DV   EP  P  P+ +   V ITPHV  VT    R    V  +     Q
Sbjct: 240 LDSGKVKGAMLDVFSREPLPPESPLWQHPRVAITPHVAAVT----RPAEAVEYISRTIAQ 295

Query: 357 LHAGTPLTG 365
           L  G  + G
Sbjct: 296 LEKGERVCG 304

Length = 312

>gnl|CDD|185335 PRK15438, PRK15438, erythronate-4-phosphate dehydrogenase PdxB; Provisional

 Score = 52.6 bits (126), Expect = 1e-07
 Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 27/172 (15%)

Query: 172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIID 231
           G +L  +TV I+G GN+G  L  RL   G+K +      A                    
Sbjct: 111 GFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADRG----------------- 153

Query: 232 DLVDEKGCHEDIFEFASKADVVVCCLSLNK----QTAGIVNKSFLSSMKKGSLLVNIARG 287
               ++G    + E   +AD++     L K    +T  + ++  + S+K G++L+N  RG
Sbjct: 154 ----DEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRG 209

Query: 288 GLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVT 339
            ++D  A+   L  G    + +DV   EP + N  +LK  ++  TPH+ G T
Sbjct: 210 AVVDNTALLTCLNEGQKLSVVLDVWEGEP-ELNVELLKKVDI-GTPHIAGYT 259

Length = 378

>gnl|CDD|166874 PRK00257, PRK00257, erythronate-4-phosphate dehydrogenase; Validated

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 55/239 (23%), Positives = 97/239 (40%), Gaps = 58/239 (24%)

Query: 109 VGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG 168
           +G + +D++     GI  +  PG    NA    +   Y++  LL       +A  +    
Sbjct: 67  IGTDHLDLDYFAEAGITWSSAPG---CNARGVVD---YVLGSLLT------LAERE---- 110

Query: 169 VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNG 228
              G  L  +T  ++G G++G  L + LR  G K++                        
Sbjct: 111 ---GVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVL------------------------ 143

Query: 229 IIDDLVDEKGCHEDIFEFAS------KADVVVCCLSLNKQ----TAGIVNKSFLSSMKKG 278
           + D    E    E   +F S      + DV+     L K+    T  +++++FL+S++ G
Sbjct: 144 VCDPPRQEA---EGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPG 200

Query: 279 SLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGG 337
           + L+N +RG ++D +A+   L  G      +DV   EP    D  L     + TPH+ G
Sbjct: 201 AWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEP--QIDLELADLCTIATPHIAG 257

Length = 381

>gnl|CDD|133445 cd01076, NAD_bind_1_Glu_DH, NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

 Score = 43.3 bits (103), Expect = 6e-05
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 11/73 (15%)

Query: 172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGI-I 230
           G  L G  V I GFGN+G   A+ L   G K++A          VS     +   +G+ +
Sbjct: 26  GIGLAGARVAIQGFGNVGSHAARFLHEAGAKVVA----------VSDSDGTIYNPDGLDV 75

Query: 231 DDLVDEKGCHEDI 243
             L+  K  H  +
Sbjct: 76  PALLAYKKEHGSV 88

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha -beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 227

>gnl|CDD|181371 PRK08306, PRK08306, dipicolinate synthase subunit A; Reviewed

 Score = 43.7 bits (104), Expect = 8e-05
 Identities = 38/141 (26%), Positives = 58/141 (41%), Gaps = 36/141 (25%)

Query: 160 MAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ 219
           MAIE       T  T+ G  V +LGFG  G+ LA+ L+  G  +    R           
Sbjct: 141 MAIEH------TPITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARK---------- 184

Query: 220 SSALAVKNGIIDDLVDEKGCH----EDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSM 275
           S+ LA         + E G       ++ E   K D++      N   A ++ K  LS M
Sbjct: 185 SAHLAR--------ITEMGLSPFHLSELAEEVGKIDIIF-----NTIPALVLTKEVLSKM 231

Query: 276 KKGSLLVNIAR--GGLLDYEA 294
              +L++++A   GG  D+E 
Sbjct: 232 PPEALIIDLASKPGG-TDFEY 251

Length = 296

>gnl|CDD|214966 smart01002, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-terminal domain

 Score = 41.7 bits (99), Expect = 1e-04
 Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 18/116 (15%)

Query: 179 TVFILGFGNIG---VELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD 235
            V ++G G +G      AK L   G ++       A   Q+       ++       L  
Sbjct: 22  KVVVIGAGVVGLGAAATAKGL---GAEVTVLDVRPARLRQLE------SLLGARFTTLYS 72

Query: 236 EKGCHEDIFEFASKADVVVCCLSL-NKQTAGIVNKSFLSSMKKGSLLVNIA--RGG 288
           +    E   E   +AD+V+  + +   +   +V +  + SMK GS++V++A  +GG
Sbjct: 73  QAELLE---EAVKEADLVIGAVLIPGAKAPKLVTREMVKSMKPGSVIVDVAADQGG 125

Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Length = 149

>gnl|CDD|240621 cd01620, Ala_dh_like, Alanine dehydrogenase and related dehydrogenases

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 20/108 (18%), Positives = 46/108 (42%), Gaps = 12/108 (11%)

Query: 179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG 238
            V I+G G +G+  AK  +  G  ++           V           G       +K 
Sbjct: 164 KVLIIGAGVVGLGAAKIAKKLGANVLVYDIKEEKLKGVE--------TLGGSRLRYSQK- 214

Query: 239 CHEDIFEFASKADVVVCCLSLNKQTAGIV-NKSFLSSMKKGSLLVNIA 285
             E++ +   + D+++  + ++   A I+  +  +  MK+G+++V++A
Sbjct: 215 --EELEKELKQTDILINAILVDGPRAPILIMEELVGPMKRGAVIVDLA 260

Alanine dehydrogenase/Transhydrogenase, such as the hexameric L-alanine dehydrogenase of Phormidium lapideum, contain 2 Rossmann fold-like domains linked by an alpha helical region. Related proteins include Saccharopine Dehydrogenase (SDH), bifunctional lysine ketoglutarate reductase /saccharopine dehydrogenase enzyme, N(5)-(carboxyethyl)ornithine synthase, and Rubrum transdehydrogenase. Alanine dehydrogenase (L-AlaDH) catalyzes the NAD-dependent conversion of pyrucate to L-alanine via reductive amination. Transhydrogenases found in bacterial and inner mitochondrial membranes link NAD(P)(H)-dependent redox reactions to proton translocation. The energy of the proton electrochemical gradient (delta-p), generated by the respiratory electron transport chain, is consumed by transhydrogenase in NAD(P)+ reduction. Transhydrogenase is likely involved in the regulation of the citric acid cycle. Rubrum transhydrogenase has 3 components, dI, dII, and dIII. dII spans the membrane while dI and dIII protrude on the cytoplasmic/matirx side. DI contains 2 domains with Rossmann folds, linked by a long alpha helix, and contains a NAD binding site. Two dI polypeptides (represented in this sub-family) spontaneously form a heterotrimer with one dIII in the absence of dII. In the heterotrimer, both dI chains may bind NAD, but only one is well-ordered. dIII also binds a well-ordered NADP, but in a different orientation than classical Rossmann domains. Length = 317

>gnl|CDD|240647 cd12170, 2-Hacid_dh_9, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 53/252 (21%), Positives = 91/252 (36%), Gaps = 66/252 (26%)

Query: 114 VDINAATRCGIKVARIP--GDVTGNAASCAELTIYLMLGLL----RKQ-NEMRMAIEQKK 166
           VDI AA   GI V  I   GD         E  I  ++ LL     KQ  E    +   K
Sbjct: 86  VDIAAARENGITVTGIRDYGD-----EGVVEYVISELIRLLHGFGGKQWKEEPRELTGLK 140

Query: 167 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVK 226
           +G             I+G G  G  +A  L  FG  +    R+     +   ++  +   
Sbjct: 141 VG-------------IIGLGTTGQMIADALSFFGADVYYYSRT----RKPDAEAKGIRYL 183

Query: 227 NGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR 286
              +++L+                DV+  CL  N     ++ +     +  G +L N + 
Sbjct: 184 P--LNELLKT-------------VDVICTCLPKNVI---LLGEEEFELLGDGKILFNTSL 225

Query: 287 GGLLDYEAIAHYLE--------CGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGV 338
           G   + EA+  +L+        C   G LG           ++ +L++ NV+ T    G 
Sbjct: 226 GPSFEVEALKKWLKASGYNIFDCDTAGALG-----------DEELLRYPNVICTNKSAGW 274

Query: 339 TEHSYRSMAKVV 350
           T  ++  +++ V
Sbjct: 275 TRQAFERLSQKV 286

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 294

>gnl|CDD|237820 PRK14806, PRK14806, bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 16/77 (20%)

Query: 180 VFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK 237
           V ++G G IG   AK LR  G+  +++A  R          +S  LAV  G+ID      
Sbjct: 6   VVVIGLGLIGGSFAKALRERGLAREVVAVDRR--------AKSLELAVSLGVIDR----- 52

Query: 238 GCHEDIFEFASKADVVV 254
              ED+ E  S ADV+V
Sbjct: 53  -GEEDLAEAVSGADVIV 68

Length = 735

>gnl|CDD|223411 COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 11/77 (14%)

Query: 172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGI-I 230
           G+ L G  V + GFGN+G   A++L   G K++A          VS     +  ++G+ +
Sbjct: 202 GDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVA----------VSDSKGGIYDEDGLDV 251

Query: 231 DDLVDEKGCHEDIFEFA 247
           + L++ K     + E+A
Sbjct: 252 EALLELKERRGSVAEYA 268

Length = 411

>gnl|CDD|178095 PLN02477, PLN02477, glutamate dehydrogenase

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 45/174 (25%), Positives = 71/174 (40%), Gaps = 38/174 (21%)

Query: 172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGI-I 230
           G+++ G+T  I GFGN+G   A+ +   G KI+A          VS  + A+  +NG+ I
Sbjct: 201 GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVA----------VSDITGAVKNENGLDI 250

Query: 231 DDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLL 290
             L         +  F                   I     L  ++   +L+  A GG++
Sbjct: 251 PALRKHVAEGGGLKGFPG--------------GDPIDPDDIL--VEPCDVLIPAALGGVI 294

Query: 291 DYEAIAHYLECGHLGGLGIDVAWTEPFDPN-DPILKFKNVLITPHV----GGVT 339
           + E  A  ++        I  A   P DP  D IL+ K V++ P +    GGVT
Sbjct: 295 NKEN-AADVKAKF-----IVEAANHPTDPEADEILRKKGVVVLPDIYANSGGVT 342

Length = 410

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	370
PLN02928	347	oxidoreductase family protein	100.0
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	100.0
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	100.0
PRK06487	317	glycerate dehydrogenase; Provisional	100.0
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	100.0
PRK06932	314	glycerate dehydrogenase; Provisional	100.0
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	100.0
PRK13243	333	glyoxylate reductase; Reviewed	100.0
PLN03139	386	formate dehydrogenase; Provisional	100.0
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
PRK07574	385	formate dehydrogenase; Provisional	100.0
PLN02306	386	hydroxypyruvate reductase	100.0
PRK12480	330	D-lactate dehydrogenase; Provisional	100.0
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	100.0
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	100.0
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	100.0
PRK08605	332	D-lactate dehydrogenase; Validated	100.0
PRK06436	303	glycerate dehydrogenase; Provisional	100.0
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	100.0
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	100.0
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	100.0
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	100.0
KOG0067	435	consensus Transcription factor CtBP [Transcription	99.97
PTZ00075	476	Adenosylhomocysteinase; Provisional	99.85
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	99.82
PF00389	133	2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydr	99.78
PRK08306	296	dipicolinate synthase subunit A; Reviewed	99.64
PLN02494	477	adenosylhomocysteinase	99.61
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	99.52
PRK13403	335	ketol-acid reductoisomerase; Provisional	99.5
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	99.4
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	99.4
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	99.33
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	99.28
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	99.25
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	99.24
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	99.23
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	99.15
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	99.15
PRK05479	330	ketol-acid reductoisomerase; Provisional	99.14
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	99.11
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	99.05
PRK15059	292	tartronate semialdehyde reductase; Provisional	99.05
KOG0409	327	consensus Predicted dehydrogenase [General functio	99.01
PLN02256	304	arogenate dehydrogenase	99.0
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	98.98
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	98.98
PLN02712	667	arogenate dehydrogenase	98.97
PLN02858	1378	fructose-bisphosphate aldolase	98.97
PLN02858	1378	fructose-bisphosphate aldolase	98.96
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	98.94
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	98.93
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	98.91
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	98.89
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	98.88
PRK08655	437	prephenate dehydrogenase; Provisional	98.83
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	98.79
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.78
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	98.78
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	98.78
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.76
PRK08818	370	prephenate dehydrogenase; Provisional	98.75
PRK07417	279	arogenate dehydrogenase; Reviewed	98.74
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	98.73
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	98.72
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	98.72
PRK05225	487	ketol-acid reductoisomerase; Validated	98.71
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.7
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	98.69
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	98.67
PRK06545	359	prephenate dehydrogenase; Validated	98.64
PLN02712	667	arogenate dehydrogenase	98.64
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.64
PLN02688	266	pyrroline-5-carboxylate reductase	98.62
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.62
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	98.61
PRK08507	275	prephenate dehydrogenase; Validated	98.6
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.59
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	98.59
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	98.57
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.57
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	98.56
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.52
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	98.52
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.51
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	98.5
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	98.48
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	98.47
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	98.46
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.46
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.46
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.45
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	98.43
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	98.42
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	98.41
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.41
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.41
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.39
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.36
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.36
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	98.34
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	98.32
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	98.31
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.29
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	98.27
KOG1370	434	consensus S-adenosylhomocysteine hydrolase [Coenzy	98.26
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	98.25
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	98.24
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	98.23
PLN02353	473	probable UDP-glucose 6-dehydrogenase	98.21
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	98.21
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	98.18
PRK07680	273	late competence protein ComER; Validated	98.17
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	98.13
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	98.1
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	98.09
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.06
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	98.05
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	98.05
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	98.04
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	98.04
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.04
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.03
PLN00203	519	glutamyl-tRNA reductase	98.02
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	98.02
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.01
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.01
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	98.0
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	98.0
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.97
PRK13304	265	L-aspartate dehydrogenase; Reviewed	97.95
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.95
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	97.95
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	97.92
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	97.91
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	97.9
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	97.89
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	97.88
PRK14982	340	acyl-ACP reductase; Provisional	97.87
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	97.85
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.84
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.83
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	97.82
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	97.8
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	97.79
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.78
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	97.78
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.78
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.77
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.74
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	97.72
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	97.72
PTZ00431	260	pyrroline carboxylate reductase; Provisional	97.72
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.71
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.7
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.7
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.7
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	97.69
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	97.69
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.67
PRK06141	314	ornithine cyclodeaminase; Validated	97.66
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.66
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.63
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.62
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	97.62
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.6
PRK07340	304	ornithine cyclodeaminase; Validated	97.6
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.58
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	97.58
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	97.58
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.57
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.56
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.56
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.56
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.55
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	97.54
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.53
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.52
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	97.5
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	97.5
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	97.45
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.45
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.45
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.43
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	97.42
KOG2653	487	consensus 6-phosphogluconate dehydrogenase [Carboh	97.41
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	97.35
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.35
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.25
PRK08618	325	ornithine cyclodeaminase; Validated	97.23
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	97.22
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	97.22
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	97.21
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	97.2
PRK11730	715	fadB multifunctional fatty acid oxidation complex	97.19
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.18
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	97.17
PLN02477	410	glutamate dehydrogenase	97.15
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.13
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	97.12
PRK06046	326	alanine dehydrogenase; Validated	97.12
PRK09414	445	glutamate dehydrogenase; Provisional	97.1
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	97.09
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	97.07
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.06
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.06
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	97.04
PRK14031	444	glutamate dehydrogenase; Provisional	97.04
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	97.04
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	97.03
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	97.01
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	96.99
PRK06823	315	ornithine cyclodeaminase; Validated	96.96
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.96
PRK08291	330	ectoine utilization protein EutC; Validated	96.96
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.95
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	96.94
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	96.92
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	96.92
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	96.92
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	96.9
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	96.9
PRK06444	197	prephenate dehydrogenase; Provisional	96.84
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.84
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	96.82
PRK06199	379	ornithine cyclodeaminase; Validated	96.81
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	96.81
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	96.8
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	96.8
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	96.78
PRK06407	301	ornithine cyclodeaminase; Provisional	96.77
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	96.76
PRK14030	445	glutamate dehydrogenase; Provisional	96.76
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.76
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.72
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	96.66
COG5322	351	Predicted dehydrogenase [General function predicti	96.64
PRK12548	289	shikimate 5-dehydrogenase; Provisional	96.61
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	96.6
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	96.59
PTZ00117	319	malate dehydrogenase; Provisional	96.56
PRK07589	346	ornithine cyclodeaminase; Validated	96.53
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.52
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	96.49
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	96.44
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	96.41
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	96.38
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.31
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	96.23
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	96.16
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.16
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	96.1
PRK00048	257	dihydrodipicolinate reductase; Provisional	96.1
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	96.06
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	96.06
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	96.05
COG3288	356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	96.05
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	96.03
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.96
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	95.95
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	95.95
PRK13303	265	L-aspartate dehydrogenase; Provisional	95.92
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	95.92
PF03720	106	UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen	95.89
PRK08306	296	dipicolinate synthase subunit A; Reviewed	95.88
PRK00856	305	pyrB aspartate carbamoyltransferase catalytic subu	95.88
COG0569	225	TrkA K+ transport systems, NAD-binding component [	95.85
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.85
PF00185	158	OTCace: Aspartate/ornithine carbamoyltransferase,	95.83
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	95.83
PRK06223	307	malate dehydrogenase; Reviewed	95.83
COG0281	432	SfcA Malic enzyme [Energy production and conversio	95.82
PLN02353	473	probable UDP-glucose 6-dehydrogenase	95.75
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	95.73
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	95.72
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	95.71
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	95.71
PRK12862	763	malic enzyme; Reviewed	95.67
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	95.66
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	95.64
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	95.58
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	95.55
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	95.54
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.53
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	95.52
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	95.48
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	95.47
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	95.4
PRK12861	764	malic enzyme; Reviewed	95.38
TIGR00670	301	asp_carb_tr aspartate carbamoyltransferase. Ornith	95.36
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	95.32
PLN02948	577	phosphoribosylaminoimidazole carboxylase	95.25
PTZ00082	321	L-lactate dehydrogenase; Provisional	95.24
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	95.15
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	95.14
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.14
TIGR01161	352	purK phosphoribosylaminoimidazole carboxylase, Pur	95.12
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	95.06
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	95.03
PRK07411	390	hypothetical protein; Validated	95.02
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	95.0
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	94.99
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	94.93
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	94.9
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	94.9
PRK09496	453	trkA potassium transporter peripheral membrane com	94.85
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	94.85
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	94.83
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	94.83
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.8
PLN02527	306	aspartate carbamoyltransferase	94.79
PRK05086	312	malate dehydrogenase; Provisional	94.79
PRK11579	346	putative oxidoreductase; Provisional	94.68
PRK10669	558	putative cation:proton antiport protein; Provision	94.67
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	94.61
PRK03659	601	glutathione-regulated potassium-efflux system prot	94.6
PRK10637	457	cysG siroheme synthase; Provisional	94.59
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	94.58
PF04016	147	DUF364: Domain of unknown function (DUF364); Inter	94.55
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	94.53
PRK08223	287	hypothetical protein; Validated	94.49
PRK01713	334	ornithine carbamoyltransferase; Provisional	94.46
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	94.42
PRK02255	338	putrescine carbamoyltransferase; Provisional	94.35
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	94.35
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	94.34
COG0673	342	MviM Predicted dehydrogenases and related proteins	94.34
PRK04148	134	hypothetical protein; Provisional	94.32
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	94.31
PRK06270	341	homoserine dehydrogenase; Provisional	94.29
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	94.29
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	94.28
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	94.27
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	94.25
PRK00779	304	ornithine carbamoyltransferase; Provisional	94.2
PRK08328	231	hypothetical protein; Provisional	94.19
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	94.14
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	94.14
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	94.11
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	94.06
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.91
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.83
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	93.77
PRK03562	621	glutathione-regulated potassium-efflux system prot	93.73
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	93.7
PRK13529	563	malate dehydrogenase; Provisional	93.69
PRK09496	453	trkA potassium transporter peripheral membrane com	93.67
PRK11891	429	aspartate carbamoyltransferase; Provisional	93.58
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	93.57
PRK14851	679	hypothetical protein; Provisional	93.52
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	93.51
PRK13814	310	pyrB aspartate carbamoyltransferase catalytic subu	93.43
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	93.35
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	93.34
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.33
COG2344	211	AT-rich DNA-binding protein [General function pred	93.29
PLN02586	360	probable cinnamyl alcohol dehydrogenase	93.23
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.22
PRK07877	722	hypothetical protein; Provisional	93.22
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	93.22
PLN02383	344	aspartate semialdehyde dehydrogenase	93.17
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	93.16
PLN03129	581	NADP-dependent malic enzyme; Provisional	93.11
PRK10206	344	putative oxidoreductase; Provisional	93.07
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	93.07
COG2910	211	Putative NADH-flavin reductase [General function p	93.04
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	93.03
PRK06128	300	oxidoreductase; Provisional	93.02
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	92.96
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	92.95
PLN02342	348	ornithine carbamoyltransferase	92.89
PRK06349	426	homoserine dehydrogenase; Provisional	92.85
PRK07523	255	gluconate 5-dehydrogenase; Provisional	92.83
PRK02102	331	ornithine carbamoyltransferase; Validated	92.79
TIGR00658	304	orni_carb_tr ornithine carbamoyltransferase. Most	92.76
PLN00106	323	malate dehydrogenase	92.75
PRK14852	989	hypothetical protein; Provisional	92.75
PTZ00325	321	malate dehydrogenase; Provisional	92.74
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.73
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	92.72
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	92.68
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	92.65
CHL00194	317	ycf39 Ycf39; Provisional	92.65
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	92.64
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	92.62
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.61
PRK08265	261	short chain dehydrogenase; Provisional	92.5
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	92.48
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	92.46
PRK05562	223	precorrin-2 dehydrogenase; Provisional	92.45
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	92.41
PRK08192	338	aspartate carbamoyltransferase; Provisional	92.3
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.23
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	92.18
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.18
PLN03209	576	translocon at the inner envelope of chloroplast su	92.17
PRK14804	311	ornithine carbamoyltransferase; Provisional	92.11
PLN02602	350	lactate dehydrogenase	91.88
PTZ00317	559	NADP-dependent malic enzyme; Provisional	91.85
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	91.83
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	91.77
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	91.75
KOG4230	935	consensus C1-tetrahydrofolate synthase [Coenzyme t	91.65
PLN02178	375	cinnamyl-alcohol dehydrogenase	91.65
PRK04523	335	N-acetylornithine carbamoyltransferase; Reviewed	91.65
PLN02740	381	Alcohol dehydrogenase-like	91.64
PRK12828	239	short chain dehydrogenase; Provisional	91.58
PRK06182	273	short chain dehydrogenase; Validated	91.55
PRK07856	252	short chain dehydrogenase; Provisional	91.53
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	91.46
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.42
PRK06196	315	oxidoreductase; Provisional	91.41
PLN02214	342	cinnamoyl-CoA reductase	91.41
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	91.41
PRK04284	332	ornithine carbamoyltransferase; Provisional	91.41
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	91.34
PRK06197	306	short chain dehydrogenase; Provisional	91.32
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	91.27
PRK06153	393	hypothetical protein; Provisional	91.22
PRK03515	336	ornithine carbamoyltransferase subunit I; Provisio	91.21
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.21
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	91.2
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	91.16
PLN02695	370	GDP-D-mannose-3',5'-epimerase	91.16
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	91.15
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	91.13
TIGR01142	380	purT phosphoribosylglycinamide formyltransferase 2	91.08
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	91.04
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	90.99
PF05222	136	AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal	90.97
TIGR03316	357	ygeW probable carbamoyltransferase YgeW. Members o	90.91
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	90.9
PRK07890	258	short chain dehydrogenase; Provisional	90.9
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	90.86
PLN02427	386	UDP-apiose/xylose synthase	90.82
PLN02272	421	glyceraldehyde-3-phosphate dehydrogenase	90.8
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	90.72
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	90.71
PRK08703	239	short chain dehydrogenase; Provisional	90.7
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.69
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	90.67
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	90.66
PRK08300	302	acetaldehyde dehydrogenase; Validated	90.62
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	90.62
PRK07825	273	short chain dehydrogenase; Provisional	90.59
PRK06523	260	short chain dehydrogenase; Provisional	90.53
TIGR00036	266	dapB dihydrodipicolinate reductase.	90.51
PF00044	151	Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase,	90.5
PRK15116	268	sulfur acceptor protein CsdL; Provisional	90.43
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	90.41
PLN02514	357	cinnamyl-alcohol dehydrogenase	90.31
PTZ00245	287	ubiquitin activating enzyme; Provisional	90.27
PF00289	110	CPSase_L_chain: Carbamoyl-phosphate synthase L cha	90.22
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	90.2
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	90.19
PRK13376	525	pyrB bifunctional aspartate carbamoyltransferase c	90.16
PRK06179	270	short chain dehydrogenase; Provisional	90.16
PRK12562	334	ornithine carbamoyltransferase subunit F; Provisio	90.13
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	90.08
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	90.02
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	90.02
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	90.01
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	89.99
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	89.98
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	89.96
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	89.96
PRK06057	255	short chain dehydrogenase; Provisional	89.94
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	89.91
PRK10537	393	voltage-gated potassium channel; Provisional	89.9
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	89.82
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	89.77
PRK06841	255	short chain dehydrogenase; Provisional	89.74
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	89.7
PRK06398	258	aldose dehydrogenase; Validated	89.58
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	89.54
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	89.52
PRK07774	250	short chain dehydrogenase; Provisional	89.5
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	89.47
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	89.29
PRK07576	264	short chain dehydrogenase; Provisional	89.28
PRK07200	395	aspartate/ornithine carbamoyltransferase family pr	89.26
PRK06139	330	short chain dehydrogenase; Provisional	89.14
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	89.14
PLN02827	378	Alcohol dehydrogenase-like	89.08
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	89.06
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	89.05
PRK05717	255	oxidoreductase; Validated	89.04
PRK06172	253	short chain dehydrogenase; Provisional	89.02
COG0540	316	PyrB Aspartate carbamoyltransferase, catalytic cha	89.02
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	88.96
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	88.91
PRK07831	262	short chain dehydrogenase; Provisional	88.91
PLN00112	444	malate dehydrogenase (NADP); Provisional	88.82
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	88.75
COG0057	335	GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt	88.74
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	88.62
PRK09186	256	flagellin modification protein A; Provisional	88.58
PRK08862	227	short chain dehydrogenase; Provisional	88.54
PRK08339	263	short chain dehydrogenase; Provisional	88.52

>PLN02928 oxidoreductase family protein

Probab=100.00  E-value=3.1e-73  Score=557.98  Aligned_cols=338  Identities=72%  Similarity=1.160  Sum_probs=293.4

Q ss_pred             ccCCCCCCccEEEEeCCCCCCchhhHHHHHhcCCCceeeeCCCCChhhhcCcceEEEEeCCCCCHHHHhcCCCCeEEEEe
Q 017490           28 MARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQF  107 (370)
Q Consensus        28 ~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~  107 (370)
                      --++|++.++||+++++.++....+.+++++..+...+...+.+++.+.+.++|+++.+..++++++++.+|+||||++.
T Consensus        10 ~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~   89 (347)
T PLN02928         10 RVHHSDMRPTRVLFCGPEFPASYSYTREYLQKYPFIQVDAVAREDVPDVIANYDICVPKMMRLDADIIARASQMKLIMQF   89 (347)
T ss_pred             hccCCCCCCCEEEEECCCchhHHHHHHHHhhcCCeeEecCCCHHHHHHHhcCCcEEEECCCCCCHHHHhcCCCceEEEEC
Confidence            34677778889999988766444555666666665555555566778888999998887778999999999999999999


Q ss_pred             CcccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEecCc
Q 017490          108 GVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGN  187 (370)
Q Consensus       108 ~~G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~  187 (370)
                      |+|+|++|++++.++||.|+|+||+.++|+.+||||++++||+++|++..+++.++++.|....+.+|.|||+||||+|.
T Consensus        90 ~~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvGIiG~G~  169 (347)
T PLN02928         90 GVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGYGA  169 (347)
T ss_pred             CcccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccCCCCCEEEEECCCH
Confidence            99999999999999999999999986668999999999999999999999999999999976667899999999999999


Q ss_pred             hhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhhccc
Q 017490          188 IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIV  267 (370)
Q Consensus       188 IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li  267 (370)
                      ||+.+|++|++|||+|++|||++.+.....     +.++...........+...++++++++||+|++|+|+|++|+++|
T Consensus       170 IG~~vA~~l~afG~~V~~~dr~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li  244 (347)
T PLN02928        170 IGIELAKRLRPFGVKLLATRRSWTSEPEDG-----LLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIV  244 (347)
T ss_pred             HHHHHHHHHhhCCCEEEEECCCCChhhhhh-----hccccccccccccccCcccCHHHHHhhCCEEEECCCCChHhhccc
Confidence            999999999999999999999754311000     000000000111112245689999999999999999999999999


Q ss_pred             CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceEEccCCCCccHHHHHHHH
Q 017490          268 NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMA  347 (370)
Q Consensus       268 ~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~  347 (370)
                      +++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+++++|||++|||++|||+||+|.++++++.
T Consensus       245 ~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPHia~~t~~~~~~~~  324 (347)
T PLN02928        245 NDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHVAGVTEYSYRSMG  324 (347)
T ss_pred             CHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCcCCCChHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCCccccC
Q 017490          348 KVVGDVALQLHAGTPLTGLEFVN  370 (370)
Q Consensus       348 ~~~~~ni~~~~~g~~~~~~~~~~  370 (370)
                      +.+++|+.+|++|+++.+++|||
T Consensus       325 ~~~~~nl~~~~~g~~~~~~~~~~  347 (347)
T PLN02928        325 KIVGDAALQLHAGRPLTGIEFVN  347 (347)
T ss_pred             HHHHHHHHHHHCCCCCCceeecC
Confidence            99999999999999999999998

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=100.00  E-value=1.2e-72  Score=547.06  Aligned_cols=306  Identities=31%  Similarity=0.513  Sum_probs=268.0

Q ss_pred             ccEEEEeCCCCCCchhhHHHHHhcCCCceee---eCCCCChhhhcCcceEEEEeCCCCCHHHHhcCCCCeEEEEeCcccC
Q 017490           36 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVD---VVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLE  112 (370)
Q Consensus        36 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d  112 (370)
                      +++++...+..+.   ....+... ....+.   ..+.+++.+.+.++|+++...+++++++++.+|+||||++.|+|+|
T Consensus         3 ~~~vl~~~~~~~~---~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~v~~~~l~~~~~Lk~I~~~g~Gvd   78 (324)
T COG0111           3 MIKVLVTDPLAPD---ALEELLAA-YDVEVPDGPDLDEEELLEALADADALIVSVTPVTEEVLAAAPNLKAIGRAGAGVD   78 (324)
T ss_pred             cceeeccCccCHH---HHHHHHhc-cccccccccccchHHHHhhcccCcEEEEecCCCCHHHHhhCCCceEEEEcccccc
Confidence            4677777665432   22222222 222221   2334557788899998776779999999999999999999999999


Q ss_pred             ccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC--CCcccccCceEEEEecCchhH
Q 017490          113 GVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PTGETLLGKTVFILGFGNIGV  190 (370)
Q Consensus       113 ~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~--~~~~~l~g~tvGIiGlG~IG~  190 (370)
                      +||+++++++||.|+|+|++   |+.+||||++++||++.|+++.+++.+++|.|..  ..+.+|+||||||||+|.||+
T Consensus        79 ~id~~~~~~~gi~V~nap~~---na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~  155 (324)
T COG0111          79 NIDLEAATKRGILVVNAPGG---NAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGR  155 (324)
T ss_pred             ccCHHHHhhcCCEEEeCCCc---chHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHH
Confidence            99999999999999999997   8899999999999999999999999999999985  467799999999999999999


Q ss_pred             HHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHH
Q 017490          191 ELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKS  270 (370)
Q Consensus       191 ~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~  270 (370)
                      .+|+++++|||+|++||++..+..                 ..........+|+++|++||||++|+|+|++|++|||++
T Consensus       156 ~va~~l~afgm~v~~~d~~~~~~~-----------------~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~  218 (324)
T COG0111         156 AVAKRLKAFGMKVIGYDPYSPRER-----------------AGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAE  218 (324)
T ss_pred             HHHHHHHhCCCeEEEECCCCchhh-----------------hccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHH
Confidence            999999999999999999544310                 111222245789999999999999999999999999999


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceEEccCCCCccHHHHHHHHHHH
Q 017490          271 FLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVV  350 (370)
Q Consensus       271 ~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~  350 (370)
                      .|++||+|++|||+|||++||++||++||++|+|+||+||||++||+|++||||++|||++|||+||+|.+++.++.+.+
T Consensus       219 ~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~ea~~~~~~~~  298 (324)
T COG0111         219 ELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQERVAEIV  298 (324)
T ss_pred             HHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCC
Q 017490          351 GDVALQLHAGTPLTG  365 (370)
Q Consensus       351 ~~ni~~~~~g~~~~~  365 (370)
                      ++|+.+|++|.++.|
T Consensus       299 ~~~i~~~l~g~~~~~  313 (324)
T COG0111         299 AENIVRYLAGGPVVN  313 (324)
T ss_pred             HHHHHHHHcCCCCCC
Confidence            999999999998644

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=100.00  E-value=3e-71  Score=538.77  Aligned_cols=304  Identities=20%  Similarity=0.306  Sum_probs=264.9

Q ss_pred             cEEEEeCCCCCCchhhHHHHHhcCCCceeee-C---CCCChhhhcCcceEEEEeCCCCCHHHHhcCCCCeEEEEeCcccC
Q 017490           37 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDV-V---PISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLE  112 (370)
Q Consensus        37 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d  112 (370)
                      |+|+++.+..+   .. .+.++...++.... .   +.+++.+.+.++|+++.+..++++++++++|+||||++.|+|+|
T Consensus         3 ~~vl~~~~~~~---~~-~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~ad~li~~~~~~~~~~l~~~p~Lk~I~~~g~G~d   78 (323)
T PRK15409          3 PSVILYKALPD---DL-LQRLEEHFTVTQVANLSPETVEQHAAAFAEAEGLLGSGEKVDAALLEKMPKLRAASTISVGYD   78 (323)
T ss_pred             ceEEEeCCCCH---HH-HHHHHhcCcEEEcCCCCCCCHHHHHHHhcCCeEEEEcCCCCCHHHHhhCCCCeEEEECceecc
Confidence            68999987532   22 23343322222211 1   12345677889999887767899999999999999999999999


Q ss_pred             ccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCC-----CcccccCceEEEEecCc
Q 017490          113 GVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP-----TGETLLGKTVFILGFGN  187 (370)
Q Consensus       113 ~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~-----~~~~l~g~tvGIiGlG~  187 (370)
                      +||+++|+++||.|+|+||+   |+.+||||++++||+++|++..+++.+++|.|...     .+.+|+||||||||+|+
T Consensus        79 ~id~~~~~~~gI~V~n~~~~---~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~  155 (323)
T PRK15409         79 NFDVDALTARKILLMHTPTV---LTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGR  155 (323)
T ss_pred             cccHHHHHHCCCEEEeCCCC---CchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccH
Confidence            99999999999999999998   78999999999999999999999999999999632     47799999999999999


Q ss_pred             hhHHHHHHhc-cCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEEEeccCChhhhc
Q 017490          188 IGVELAKRLR-PFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTAG  265 (370)
Q Consensus       188 IG~~vA~~l~-~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~lP~t~~t~~  265 (370)
                      ||+.+|++++ +|||+|++||++.....                   ....+ .+.++++++++||+|++|+|+|++|++
T Consensus       156 IG~~va~~l~~~fgm~V~~~~~~~~~~~-------------------~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~  216 (323)
T PRK15409        156 IGMALAQRAHFGFNMPILYNARRHHKEA-------------------EERFNARYCDLDTLLQESDFVCIILPLTDETHH  216 (323)
T ss_pred             HHHHHHHHHHhcCCCEEEEECCCCchhh-------------------HHhcCcEecCHHHHHHhCCEEEEeCCCChHHhh
Confidence            9999999998 99999999998743210                   01111 346899999999999999999999999


Q ss_pred             ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceEEccCCCCccHHHHHH
Q 017490          266 IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRS  345 (370)
Q Consensus       266 li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~  345 (370)
                      +||++.|++||||++|||+|||++||++||++||++|+|+||+||||++||+|.++|||++|||++|||+||.|.+++.+
T Consensus       217 li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~~~  296 (323)
T PRK15409        217 LFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRYN  296 (323)
T ss_pred             ccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCCc
Q 017490          346 MAKVVGDVALQLHAGTPLTGL  366 (370)
Q Consensus       346 ~~~~~~~ni~~~~~g~~~~~~  366 (370)
                      +.+.+++|+.+|++|+++.+.
T Consensus       297 ~~~~~~~ni~~~~~g~~~~~~  317 (323)
T PRK15409        297 MAACAVDNLIDALQGKVEKNC  317 (323)
T ss_pred             HHHHHHHHHHHHHcCCCCCcc
Confidence            999999999999999987654

>PRK06487 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=6.7e-70  Score=528.71  Aligned_cols=301  Identities=26%  Similarity=0.390  Sum_probs=262.1

Q ss_pred             cEEEEeCCCC-CCchhhHHHHH-hcCCCceeee-CCCCChhhhcCcceEEEEeCCCCCHHHHhcCCCCeEEEEeCcccCc
Q 017490           37 TRVLFCGPHF-PASHNYTKEYL-QNYPSIQVDV-VPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEG  113 (370)
Q Consensus        37 ~~vl~~~~~~-~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~  113 (370)
                      |||+++.... +.... ..+.+ +.++.+.+.. .+.+++.+.+.++|+++.+..++++++++++|+||||++.|+|+|+
T Consensus         1 m~i~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~   79 (317)
T PRK06487          1 MRAVFLDHDSLDLGDL-DLSPLEQAFDELQLHDATTPEQVAERLRGAQVAISNKVALDAAALAAAPQLKLILVAATGTNN   79 (317)
T ss_pred             CeEEEEccccCCcccc-chhHHHhhCCeEEEecCCCHHHHHHHhCCCeEEEEeCCCCCHHHHhhCCCCeEEEEcCccccc
Confidence            3677775531 11111 12233 2344544432 2345677888999988877778999999999999999999999999


Q ss_pred             cchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCC--------CcccccCceEEEEec
Q 017490          114 VDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--------TGETLLGKTVFILGF  185 (370)
Q Consensus       114 id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~--------~~~~l~g~tvGIiGl  185 (370)
                      ||++++.++||.|+|+||+   |+.+||||++++||+++|++..+++.+++|.|...        .+++|.||||||||+
T Consensus        80 id~~~~~~~gI~v~n~~g~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~  156 (317)
T PRK06487         80 VDLAAARERGITVCNCQGY---GTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGH  156 (317)
T ss_pred             cCHHHHHHCCCEEEeCCCC---CcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECC
Confidence            9999999999999999998   77999999999999999999999999999999632        246899999999999


Q ss_pred             CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhhc
Q 017490          186 GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAG  265 (370)
Q Consensus       186 G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~  265 (370)
                      |.||+++|+++++|||+|++||++....                   ..    ...++++++++||+|++|+|+|++|++
T Consensus       157 G~IG~~vA~~l~~fgm~V~~~~~~~~~~-------------------~~----~~~~l~ell~~sDiv~l~lPlt~~T~~  213 (317)
T PRK06487        157 GELGGAVARLAEAFGMRVLIGQLPGRPA-------------------RP----DRLPLDELLPQVDALTLHCPLTEHTRH  213 (317)
T ss_pred             CHHHHHHHHHHhhCCCEEEEECCCCCcc-------------------cc----cccCHHHHHHhCCEEEECCCCChHHhc
Confidence            9999999999999999999999863220                   01    235899999999999999999999999


Q ss_pred             ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccC--CCceEEccCCCCccHHHH
Q 017490          266 IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILK--FKNVLITPHVGGVTEHSY  343 (370)
Q Consensus       266 li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~--~~nvilTPHia~~t~~~~  343 (370)
                      +||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+++++|||+  +|||++|||+||+|.++.
T Consensus       214 li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~t~e~~  293 (317)
T PRK06487        214 LIGARELALMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREAR  293 (317)
T ss_pred             CcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccCCHHHH
Confidence            999999999999999999999999999999999999999999999999999999999995  899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCCC
Q 017490          344 RSMAKVVGDVALQLHAGTPLT  364 (370)
Q Consensus       344 ~~~~~~~~~ni~~~~~g~~~~  364 (370)
                      +++.+.+++|+++|++|+++.
T Consensus       294 ~~~~~~~~~ni~~~~~g~~~~  314 (317)
T PRK06487        294 QRIVGQLAENARAFFAGKPLR  314 (317)
T ss_pred             HHHHHHHHHHHHHHHcCCCCc
Confidence            999999999999999998764

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=100.00  E-value=8.5e-70  Score=526.69  Aligned_cols=299  Identities=22%  Similarity=0.378  Sum_probs=259.4

Q ss_pred             cEEEEeCCCCCCchhhHHHHHhcCCCceeee-CCCCChhhhcCcceEEEEeCCCCCHHHHhcCCCCeEEEEeCcccCccc
Q 017490           37 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDV-VPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVD  115 (370)
Q Consensus        37 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id  115 (370)
                      |||+++.+.... .. ..+.++....+.... .+.+++.+.+.++|+++.+..++++++++++|+||||++.|+|+|+||
T Consensus         1 mki~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id   78 (311)
T PRK08410          1 MKIVILDAKTLG-DK-DLSVFEEFGDFQIYPTTSPEEVIERIKDANIIITNKVVIDKEVLSQLPNLKLICITATGTNNVD   78 (311)
T ss_pred             CeEEEEecCCCC-hh-hHHHHhhCceEEEeCCCCHHHHHHHhCCCCEEEECCCCCCHHHHhhCCCCeEEEEccccccccc
Confidence            467777653211 11 123343332222221 224567778899999887777999999999999999999999999999


Q ss_pred             hhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCC--------CcccccCceEEEEecCc
Q 017490          116 INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--------TGETLLGKTVFILGFGN  187 (370)
Q Consensus       116 ~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~--------~~~~l~g~tvGIiGlG~  187 (370)
                      +++|+++||.|+|+||+   |+.+||||++++||+++|++..+++.+++|.|...        .+++|.||||||||+|+
T Consensus        79 ~~~~~~~gI~v~n~~g~---~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~  155 (311)
T PRK08410         79 IEYAKKKGIAVKNVAGY---STESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGT  155 (311)
T ss_pred             HHHHHhCCCEEEcCCCC---CChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCH
Confidence            99999999999999998   78999999999999999999999999999999632        24789999999999999


Q ss_pred             hhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhhccc
Q 017490          188 IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIV  267 (370)
Q Consensus       188 IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li  267 (370)
                      ||+++|+++++|||+|++|||+....                 ..    ...+.++++++++||+|++|+|+|++|+++|
T Consensus       156 IG~~vA~~~~~fgm~V~~~d~~~~~~-----------------~~----~~~~~~l~ell~~sDvv~lh~Plt~~T~~li  214 (311)
T PRK08410        156 IGKRVAKIAQAFGAKVVYYSTSGKNK-----------------NE----EYERVSLEELLKTSDIISIHAPLNEKTKNLI  214 (311)
T ss_pred             HHHHHHHHHhhcCCEEEEECCCcccc-----------------cc----CceeecHHHHhhcCCEEEEeCCCCchhhccc
Confidence            99999999999999999999864321                 00    0124689999999999999999999999999


Q ss_pred             CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCC---CceEEccCCCCccHHHHH
Q 017490          268 NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKF---KNVLITPHVGGVTEHSYR  344 (370)
Q Consensus       268 ~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~---~nvilTPHia~~t~~~~~  344 (370)
                      |++.|++||||++|||+|||++||++||++||++|+|+ |+||||++||+++++|||++   |||++|||+||+|.++..
T Consensus       215 ~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t~e~~~  293 (311)
T PRK08410        215 AYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKEARK  293 (311)
T ss_pred             CHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccCCHHHHH
Confidence            99999999999999999999999999999999999999 99999999999999999987   899999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCC
Q 017490          345 SMAKVVGDVALQLHAGTP  362 (370)
Q Consensus       345 ~~~~~~~~ni~~~~~g~~  362 (370)
                      ++.+.+++|+.+|++|++
T Consensus       294 ~~~~~~~~nl~~~~~g~~  311 (311)
T PRK08410        294 TLIEKVKENIKDFLEGGK  311 (311)
T ss_pred             HHHHHHHHHHHHHHcCCC
Confidence            999999999999999864

>PRK06932 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=2.8e-69  Score=523.47  Aligned_cols=269  Identities=21%  Similarity=0.332  Sum_probs=248.0

Q ss_pred             CCCChhhhcCcceEEEEeCCCCCHHHHhcCCCCeEEEEeCcccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHH
Q 017490           69 PISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM  148 (370)
Q Consensus        69 ~~~~~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~  148 (370)
                      +++++.+.+.++|+++....++++++++++|+||||++.|+|+|+||+++|.++||.|+|+||+   |+.+||||++++|
T Consensus        34 ~~~~~~~~~~~~d~ii~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~---~~~~vAE~~i~l~  110 (314)
T PRK06932         34 SAEQTIERAKDADIVITSKVLFTRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGY---SSTTVPEHVLGMI  110 (314)
T ss_pred             ChHHHHHHhCCCcEEEEeCCCCCHHHHhhCcCCeEEEEecccccccCHHHHHhCCCEEEeCCCC---ChhHHHHHHHHHH
Confidence            3566778889999888777789999999999999999999999999999999999999999998   7799999999999


Q ss_pred             HHHHHhHHHHHHHHHhcccCCC--------CcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcccccccccc
Q 017490          149 LGLLRKQNEMRMAIEQKKLGVP--------TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQS  220 (370)
Q Consensus       149 L~~~R~~~~~~~~~~~~~~~~~--------~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~  220 (370)
                      |+++|++..+++.++++.|...        .+++|+||||||||+|.||+++|+++++|||+|++||+....        
T Consensus       111 l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--------  182 (314)
T PRK06932        111 FALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--------  182 (314)
T ss_pred             HHHHhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--------
Confidence            9999999999999999999632        357899999999999999999999999999999999975321        


Q ss_pred             chhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 017490          221 SALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE  300 (370)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~  300 (370)
                                 .. .  ..+.++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||++||+
T Consensus       183 -----------~~-~--~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~  248 (314)
T PRK06932        183 -----------VC-R--EGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALE  248 (314)
T ss_pred             -----------cc-c--cccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence                       00 0  124689999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCceEEEEecCCCCCCCCCCccc----CCCceEEccCCCCccHHHHHHHHHHHHHHHHHHHcCCC
Q 017490          301 CGHLGGLGIDVAWTEPFDPNDPIL----KFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTP  362 (370)
Q Consensus       301 ~g~i~ga~lDV~~~EPl~~~~pL~----~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~~~g~~  362 (370)
                      +|+|+||+||||++||+++++|||    ++|||++|||+||+|.++.+++.+.+++|+.+|++|++
T Consensus       249 ~g~i~gAaLDV~~~EP~~~~~pl~~~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~~g~  314 (314)
T PRK06932        249 NGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITPHIAWASDSAVTTLVNKVAQNIEEFVQQGK  314 (314)
T ss_pred             cCCccEEEEecCCCCCCCCCChhhHhhcCCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999999    49999999999999999999999999999999998753

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=100.00  E-value=3.2e-68  Score=515.80  Aligned_cols=273  Identities=30%  Similarity=0.473  Sum_probs=251.4

Q ss_pred             ChhhhcCcceEEEEe-CCCCCHHHHhcCCCCeEEEEeCcccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHH
Q 017490           72 DVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLG  150 (370)
Q Consensus        72 ~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~  150 (370)
                      ++.+..+++|++++. ..++++++++++|+||+|+..|+||||||+++|+++||.|+|+|++   ++.+||||++++||+
T Consensus        37 ~~~~~~~~~~~i~~~~~~~i~~~~l~~~p~LKlIa~~~~G~D~vDl~aa~~~gI~Vtnvp~~---~t~sVAe~~~aLiLa  113 (324)
T COG1052          37 ELAERLKDADAVITFVNDRIDAEVLEKLPGLKLIATRSAGYDNVDLEAAKERGITVTNVPGY---STEAVAEHAVALILA  113 (324)
T ss_pred             HHHHHhcCCcEEEEcCCCCcCHHHHHhCCCcEEEEEeccccCcccHHHHHHCCcEEEeCCCC---CchHHHHHHHHHHHH
Confidence            346778899988776 7899999999999999999999999999999999999999999999   568999999999999


Q ss_pred             HHHhHHHHHHHHHhcccCC------CCcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhh
Q 017490          151 LLRKQNEMRMAIEQKKLGV------PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALA  224 (370)
Q Consensus       151 ~~R~~~~~~~~~~~~~~~~------~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~  224 (370)
                      +.|++...++.+|+|.|..      ..+.+++|||+||||+|+||+++|+++++|||+|++|||++.+.           
T Consensus       114 ~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~~~-----------  182 (324)
T COG1052         114 LARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNPE-----------  182 (324)
T ss_pred             HhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCChH-----------
Confidence            9999999999999999864      45789999999999999999999999999999999999986521           


Q ss_pred             hcccccccccccc-CCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 017490          225 VKNGIIDDLVDEK-GCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGH  303 (370)
Q Consensus       225 ~~~~~~~~~~~~~-~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~  303 (370)
                              ...+. ..+.++++++++||+|++|||+|++|++|||++.|++||+|++|||+|||++||++||++||++|+
T Consensus       183 --------~~~~~~~~y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~  254 (324)
T COG1052         183 --------AEKELGARYVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGK  254 (324)
T ss_pred             --------HHhhcCceeccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCC
Confidence                    00111 134569999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEecCCCCCCCCCCcccCCCc---eEEccCCCCccHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 017490          304 LGGLGIDVAWTEPFDPNDPILKFKN---VLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL  366 (370)
Q Consensus       304 i~ga~lDV~~~EPl~~~~pL~~~~n---vilTPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~  366 (370)
                      |+|||||||+.||.+.++||+.++|   |++|||+|++|.+++.+|++.+++|+..|++|+++.+.
T Consensus       255 i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~ea~~~m~~~~~~nl~~~~~g~~~~~~  320 (324)
T COG1052         255 IAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEARKAMAELALENLEAFFDGGVPPNE  320 (324)
T ss_pred             cceEEeeecCCCCCCCChhHhhccCCCCEEEccccccccHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence            9999999999999878999998888   99999999999999999999999999999999888764

>PRK13243 glyoxylate reductase; Reviewed

Probab=100.00  E-value=1.2e-67  Score=516.21  Aligned_cols=273  Identities=28%  Similarity=0.465  Sum_probs=250.1

Q ss_pred             CChhhhcCcceEEEEeC-CCCCHHHHhcCCCCeEEEEeCcccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHH
Q 017490           71 SDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML  149 (370)
Q Consensus        71 ~~~~~~~~~~d~~i~~~-~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L  149 (370)
                      +++.+.++++|+++++. .++++++++++|+||||++.|+|+|+||+++|+++||.|+|+||+   |+.+||||++++||
T Consensus        37 ~~~~~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~---~~~~vAE~~~~l~L  113 (333)
T PRK13243         37 EVLLEKVRDVDALVTMLSERIDCEVFEAAPRLRIVANYAVGYDNIDVEEATRRGIYVTNTPGV---LTEATADFAWALLL  113 (333)
T ss_pred             HHHHHHhCCCcEEEEeCCCCCCHHHHhhCCCCeEEEecCccccccCHHHHHHcCCEEEECCCC---ChHHHHHHHHHHHH
Confidence            44667789999887753 589999999999999999999999999999999999999999998   78999999999999


Q ss_pred             HHHHhHHHHHHHHHhcccCCC---------CcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcccccccccc
Q 017490          150 GLLRKQNEMRMAIEQKKLGVP---------TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQS  220 (370)
Q Consensus       150 ~~~R~~~~~~~~~~~~~~~~~---------~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~  220 (370)
                      +++|++..+++.+++|.|...         .+.+|+||||||||+|.||+.+|++|++|||+|++|||+.....      
T Consensus       114 ~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~------  187 (333)
T PRK13243        114 ATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA------  187 (333)
T ss_pred             HHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh------
Confidence            999999999999999999631         36799999999999999999999999999999999999754310      


Q ss_pred             chhhhccccccccccccC-CCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 017490          221 SALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYL  299 (370)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL  299 (370)
                                   ....+ ...++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|+++|+++|
T Consensus       188 -------------~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL  254 (333)
T PRK13243        188 -------------EKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKAL  254 (333)
T ss_pred             -------------HHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHH
Confidence                         00111 2458999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCceEEEEecCCCCCCCCCCcccCCCceEEccCCCCccHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 017490          300 ECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL  366 (370)
Q Consensus       300 ~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~  366 (370)
                      ++|+|+||+||||++||++ ++|||++|||++|||+||+|.++..++.+.+++|+.+|++|+++.|+
T Consensus       255 ~~g~i~gAaLDV~~~EP~~-~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~  320 (333)
T PRK13243        255 KEGWIAGAGLDVFEEEPYY-NEELFSLKNVVLAPHIGSATFEAREGMAELVAENLIAFKRGEVPPTL  320 (333)
T ss_pred             HcCCeEEEEeccCCCCCCC-CchhhcCCCEEECCcCCcCHHHHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence            9999999999999999987 89999999999999999999999999999999999999999987654

>PLN03139 formate dehydrogenase; Provisional

Probab=100.00  E-value=1.3e-66  Score=514.48  Aligned_cols=278  Identities=31%  Similarity=0.463  Sum_probs=253.8

Q ss_pred             CChhhhcCcceEEEEeC---CCCCHHHHhcCCCCeEEEEeCcccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHH
Q 017490           71 SDVPDVIANYHLCVVKT---MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL  147 (370)
Q Consensus        71 ~~~~~~~~~~d~~i~~~---~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~  147 (370)
                      +++.+.+.++|++|...   .++++++|+++|+||||++.|+|+|+||+++|.++||.|+|+||+   |+.+||||++++
T Consensus        89 ~~~~~~l~dadili~~~~~~~~~~~e~l~~ap~LK~I~~~g~G~D~iDl~aa~~~gI~V~n~~g~---na~sVAE~al~l  165 (386)
T PLN03139         89 CELEKHIPDLHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGS---NVVSVAEDELMR  165 (386)
T ss_pred             HHHHHHhCCCeEEEEcCccCCCCCHHHHhhCCCccEEEECCccccccCHHHHHHCCeEEEECCCc---CcHHHHHHHHHH
Confidence            45677889999988753   369999999999999999999999999999999999999999998   889999999999


Q ss_pred             HHHHHHhHHHHHHHHHhcccCC----CCcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchh
Q 017490          148 MLGLLRKQNEMRMAIEQKKLGV----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSAL  223 (370)
Q Consensus       148 ~L~~~R~~~~~~~~~~~~~~~~----~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~  223 (370)
                      ||+++|++..+++.+++|.|..    ..+++|.||||||||+|+||+.+|++|++|||+|++||++..+.          
T Consensus       166 iL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~----------  235 (386)
T PLN03139        166 ILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDP----------  235 (386)
T ss_pred             HHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcch----------
Confidence            9999999999999999999963    24689999999999999999999999999999999999875331          


Q ss_pred             hhccccccccccccC--CCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 017490          224 AVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC  301 (370)
Q Consensus       224 ~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~  301 (370)
                              +.....+  ...++++++++||+|++|+|++++|+++||++.|++||+|++|||+|||++||++||+++|++
T Consensus       236 --------~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s  307 (386)
T PLN03139        236 --------ELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSS  307 (386)
T ss_pred             --------hhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHc
Confidence                    0111111  235899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceEEEEecCCCCCCCCCCcccCCCceEEccCCCCccHHHHHHHHHHHHHHHHHHHcCCCCCCcccc
Q 017490          302 GHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGLEFV  369 (370)
Q Consensus       302 g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~~~~  369 (370)
                      |+|+||+||||++||+|+++|||++|||++|||+||.|.+++.++++.+++|+.+|++|+++...++|
T Consensus       308 G~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~~~r~~~~~~~nl~~~~~G~~~~~~~~i  375 (386)
T PLN03139        308 GHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEDFPAQNYI  375 (386)
T ss_pred             CCceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHHHHHHHHHHHHHHHHHHcCCCCCCccee
Confidence            99999999999999999999999999999999999999999999999999999999999987666554

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=2.8e-66  Score=518.64  Aligned_cols=306  Identities=25%  Similarity=0.344  Sum_probs=264.0

Q ss_pred             CCCccEEEEeCCCCCCchhhHHHHHhcCCCc-eeee----CCCCChhhhcCcceEEEEe-CCCCCHHHHhcCCCCeEEEE
Q 017490           33 DKNITRVLFCGPHFPASHNYTKEYLQNYPSI-QVDV----VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQ  106 (370)
Q Consensus        33 ~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~  106 (370)
                      ++.||||+++.+..+   .. .+.++.. ++ ++..    .+++++.+.+.++|+++.+ ..++++++++++|+||||++
T Consensus         7 ~~~~~~ili~~~~~~---~~-~~~l~~~-~~~~v~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~l~~~~~Lk~I~~   81 (409)
T PRK11790          7 PKDKIKFLLLEGVHQ---SA-VEVLRAA-GYTNIEYHKGALDEEELIEAIKDAHFIGIRSRTQLTEEVLAAAEKLVAIGC   81 (409)
T ss_pred             CCCCeEEEEECCCCH---HH-HHHHHhc-CCceEEECCCCCCHHHHHHHcCCCCEEEEeCCCCCCHHHHhhCCCCeEEEE
Confidence            445689999875432   22 2334332 22 3322    2345667788899987654 46899999999999999999


Q ss_pred             eCcccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCC--CcccccCceEEEEe
Q 017490          107 FGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--TGETLLGKTVFILG  184 (370)
Q Consensus       107 ~~~G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~--~~~~l~g~tvGIiG  184 (370)
                      .|+|+|+||+++|+++||.|+|+||+   |+.+||||++++||+++|++..+++.+++|.|...  .+.+|.||||||||
T Consensus        82 ~~~G~d~id~~~~~~~gI~V~n~pg~---~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvGIiG  158 (409)
T PRK11790         82 FCIGTNQVDLDAAAKRGIPVFNAPFS---NTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGIVG  158 (409)
T ss_pred             CceecccccHHHHHhCCCEEEeCCCC---ChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccCCCCEEEEEC
Confidence            99999999999999999999999998   78999999999999999999999999999999743  47899999999999


Q ss_pred             cCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhh
Q 017490          185 FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTA  264 (370)
Q Consensus       185 lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~  264 (370)
                      +|+||+.+|+++++|||+|++||++....                 ....   ....++++++++||+|++|+|+|++|+
T Consensus       159 ~G~IG~~vA~~~~~fGm~V~~~d~~~~~~-----------------~~~~---~~~~~l~ell~~sDiVslh~Plt~~T~  218 (409)
T PRK11790        159 YGHIGTQLSVLAESLGMRVYFYDIEDKLP-----------------LGNA---RQVGSLEELLAQSDVVSLHVPETPSTK  218 (409)
T ss_pred             CCHHHHHHHHHHHHCCCEEEEECCCcccc-----------------cCCc---eecCCHHHHHhhCCEEEEcCCCChHHh
Confidence            99999999999999999999999863220                 0001   023589999999999999999999999


Q ss_pred             cccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCC----CCcccCCCceEEccCCCCccH
Q 017490          265 GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDP----NDPILKFKNVLITPHVGGVTE  340 (370)
Q Consensus       265 ~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~----~~pL~~~~nvilTPHia~~t~  340 (370)
                      ++||++.|++||+|++|||+|||++||++||+++|++|+|+||+||||++||++.    ++|||++|||++|||+||+|.
T Consensus       219 ~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t~  298 (409)
T PRK11790        219 NMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQ  298 (409)
T ss_pred             hccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCHH
Confidence            9999999999999999999999999999999999999999999999999999876    479999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCCc
Q 017490          341 HSYRSMAKVVGDVALQLHAGTPLTGL  366 (370)
Q Consensus       341 ~~~~~~~~~~~~ni~~~~~g~~~~~~  366 (370)
                      ++..++.+.+++|+.+|++|+++.+.
T Consensus       299 ea~~~~~~~~~~nl~~~~~~~~~~~~  324 (409)
T PRK11790        299 EAQENIGLEVAGKLVKYSDNGSTLSA  324 (409)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCcCcc
Confidence            99999999999999999998877543

>PRK07574 formate dehydrogenase; Provisional

Probab=100.00  E-value=3.2e-66  Score=512.09  Aligned_cols=278  Identities=30%  Similarity=0.457  Sum_probs=254.4

Q ss_pred             CChhhhcCcceEEEEe---CCCCCHHHHhcCCCCeEEEEeCcccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHH
Q 017490           71 SDVPDVIANYHLCVVK---TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL  147 (370)
Q Consensus        71 ~~~~~~~~~~d~~i~~---~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~  147 (370)
                      +++.+.+.++|++|..   ..++++++++++|+||||++.|+|+|+||+++|+++||.|+|+||+   |+.+||||++++
T Consensus        82 ~~~~~~l~dadili~~~~~~~~~~~e~l~~~p~LK~I~~~g~G~D~id~~aa~~~gI~V~n~~g~---~a~~VAE~al~l  158 (385)
T PRK07574         82 SDFEKELPDADVVISQPFWPAYLTAERIAKAPNLKLAITAGIGSDHVDLQAASEHGITVAEVTGS---NSISVAEHVVMM  158 (385)
T ss_pred             HHHHHHcCCCeEEEEecCCCCCCCHHHHhhCCCCcEEEECCcccccccHHHHHHCCcEEEcCCCC---chHHHHHHHHHH
Confidence            4567788999998874   2579999999999999999999999999999999999999999997   889999999999


Q ss_pred             HHHHHHhHHHHHHHHHhcccCCC----CcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchh
Q 017490          148 MLGLLRKQNEMRMAIEQKKLGVP----TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSAL  223 (370)
Q Consensus       148 ~L~~~R~~~~~~~~~~~~~~~~~----~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~  223 (370)
                      ||+++|++..+++.+++|.|...    .+.+|.|++|||||+|+||+.+|++|++|||+|++|||+..+..         
T Consensus       159 ~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~---------  229 (385)
T PRK07574        159 ILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEE---------  229 (385)
T ss_pred             HHHHHcCHHHHHHHHHhCCCCcccccccceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchh---------
Confidence            99999999999999999999642    46789999999999999999999999999999999999753210         


Q ss_pred             hhccccccccccccC--CCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 017490          224 AVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC  301 (370)
Q Consensus       224 ~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~  301 (370)
                               .....+  ...++++++++||+|++|+|++++|+++||++.|++||+|++|||+|||+++|++||++||++
T Consensus       230 ---------~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s  300 (385)
T PRK07574        230 ---------VEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALES  300 (385)
T ss_pred             ---------hHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHh
Confidence                     001111  246899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceEEEEecCCCCCCCCCCcccCCCceEEccCCCCccHHHHHHHHHHHHHHHHHHHcCCCCCCcccc
Q 017490          302 GHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGLEFV  369 (370)
Q Consensus       302 g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~~~~  369 (370)
                      |+|+||+||||++||+|+++|||++|||++|||+||+|.++++++.+.+++|+++|++|+++.|..++
T Consensus       301 G~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~~~~~~~~ni~~~~~G~~~~~~~~~  368 (385)
T PRK07574        301 GHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQARYAAGTREILECFFEGRPIRDEYLI  368 (385)
T ss_pred             CCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHHHHHHHHHHHHHHHcCCCCCCCceE
Confidence            99999999999999999999999999999999999999999999999999999999999999876543

>PLN02306 hydroxypyruvate reductase

Probab=100.00  E-value=1.1e-64  Score=502.09  Aligned_cols=322  Identities=24%  Similarity=0.306  Sum_probs=262.2

Q ss_pred             CCCCccEEEEeCCCCCCchhhHHHHHhcCCCceeee-------CCCCChhhhc-CcceEEEEe-CCCCCHHHHhcCCC--
Q 017490           32 SDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV-------VPISDVPDVI-ANYHLCVVK-TMRLDSNCISRANQ--  100 (370)
Q Consensus        32 ~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~-~~~d~~i~~-~~~~~~~~l~~~~~--  100 (370)
                      +++-+++|+++.+..+.  .. .+.++.. ++++..       .+.+++.+.+ .++|+++++ ..++++++++++|+  
T Consensus        11 ~~~~~~~v~~~~~~~~~--~~-~~~L~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~~~~~l~   86 (386)
T PLN02306         11 NPNGKYRVVSTKPMPGT--RW-INLLVDQ-DCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFSALSKAG   86 (386)
T ss_pred             CCCCCceEEEeCCCCcH--HH-HHHHHhc-CceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHHhCCcCC
Confidence            45567899998764321  11 2333332 223221       2345566666 469987765 46899999999995  


Q ss_pred             CeEEEEeCcccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC-----CCcccc
Q 017490          101 MKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV-----PTGETL  175 (370)
Q Consensus       101 Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~-----~~~~~l  175 (370)
                      ||+|++.|+|+|+||+++|+++||.|+|+||+   |+.+||||++++||+++|++..+++.+++|.|..     ..+.+|
T Consensus        87 lk~I~~~~~G~D~iD~~aa~~~gI~V~n~pg~---~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L  163 (386)
T PLN02306         87 GKAFSNMAVGYNNVDVEAANKYGIAVGNTPGV---LTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLL  163 (386)
T ss_pred             ceEEEECCcccccccHHHHHHCCCEEEECCCc---CHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCC
Confidence            69999999999999999999999999999998   7899999999999999999999999999988742     246899


Q ss_pred             cCceEEEEecCchhHHHHHHhc-cCCCEEEEEcCCCccccccccccchhhhcccccc-ccccccC--CCCCHHHHHhcCC
Q 017490          176 LGKTVFILGFGNIGVELAKRLR-PFGVKIIATKRSWASHSQVSCQSSALAVKNGIID-DLVDEKG--CHEDIFEFASKAD  251 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~-~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~l~ell~~aD  251 (370)
                      .||||||||+|.||+.+|++++ +|||+|++||++..........  .+   ..... .......  ...++++++++||
T Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~--~~---~~~l~~~~~~~~~~~~~~~L~ell~~sD  238 (386)
T PLN02306        164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVT--AY---GQFLKANGEQPVTWKRASSMEEVLREAD  238 (386)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhh--hh---cccccccccccccccccCCHHHHHhhCC
Confidence            9999999999999999999985 9999999999875421000000  00   00000 0000000  1258999999999


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceEE
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLI  331 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvil  331 (370)
                      +|++|+|+|++|++|||++.|++||+|++|||+|||++||++||++||++|+++||+||||++||+ +++|||++|||++
T Consensus       239 iV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~-~~~~L~~~pNVil  317 (386)
T PLN02306        239 VISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPY-MKPGLADMKNAVV  317 (386)
T ss_pred             EEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCC-CcchHhhCCCEEE
Confidence            999999999999999999999999999999999999999999999999999999999999999997 4679999999999


Q ss_pred             ccCCCCccHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 017490          332 TPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL  366 (370)
Q Consensus       332 TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~  366 (370)
                      |||+||+|.++.+++.+.+++|+.+|++|+++.|.
T Consensus       318 TPHiag~T~e~~~~~~~~~~~ni~~~~~g~~~~~~  352 (386)
T PLN02306        318 VPHIASASKWTREGMATLAALNVLGKLKGYPVWGD  352 (386)
T ss_pred             CCccccCcHHHHHHHHHHHHHHHHHHHcCCCCccc
Confidence            99999999999999999999999999999988654

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=100.00  E-value=5e-64  Score=489.70  Aligned_cols=306  Identities=20%  Similarity=0.318  Sum_probs=267.3

Q ss_pred             ccEEEEeCCCCCCchhhHHHHHhcCCCceeeeCC---CCChhhhcCcceEEEEe-CCCCCHHHHhcCC--CCeEEEEeCc
Q 017490           36 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVP---ISDVPDVIANYHLCVVK-TMRLDSNCISRAN--QMKLIMQFGV  109 (370)
Q Consensus        36 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~--~Lk~I~~~~~  109 (370)
                      ||||++++.. +.+.++..++++.+ ++++...+   .++..+.+.++|++++. ..++++++++++|  +||+|++.|+
T Consensus         1 ~~~i~~~~~~-~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~~~   78 (330)
T PRK12480          1 MTKIMFFGTR-DYEKEMALNWGKKN-NVEVTTSKELLSSATVDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTA   78 (330)
T ss_pred             CcEEEEEeCc-HHHHHHHHHHHHhc-CeEEEEcCCCCCHHHHHHhCCCCEEEEecCCCCCHHHHHhhhhcCceEEEeccc
Confidence            4899999875 55567777777665 55554322   23457788899988775 4689999999997  8999999999


Q ss_pred             ccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccC--C-CCcccccCceEEEEecC
Q 017490          110 GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG--V-PTGETLLGKTVFILGFG  186 (370)
Q Consensus       110 G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~--~-~~~~~l~g~tvGIiGlG  186 (370)
                      |+|+||+++|+++||.|+|+||+   |+.+||||++++||+++|++..+++.++++.|.  . ..+++|+|++|||||+|
T Consensus        79 G~d~id~~~~~~~gI~v~n~~~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G  155 (330)
T PRK12480         79 GFDMYDLDLAKKHNIVISNVPSY---SPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTG  155 (330)
T ss_pred             ccchhhHHHHHHCCCEEEeCCCC---ChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCC
Confidence            99999999999999999999998   779999999999999999999999999998653  2 35789999999999999


Q ss_pred             chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhhcc
Q 017490          187 NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGI  266 (370)
Q Consensus       187 ~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~l  266 (370)
                      .||+.+|++|+++||+|++||++....                 .... +  ...++++++++||+|++|+|++++|+++
T Consensus       156 ~IG~~vA~~L~~~G~~V~~~d~~~~~~-----------------~~~~-~--~~~~l~ell~~aDiVil~lP~t~~t~~l  215 (330)
T PRK12480        156 RIGAATAKIYAGFGATITAYDAYPNKD-----------------LDFL-T--YKDSVKEAIKDADIISLHVPANKESYHL  215 (330)
T ss_pred             HHHHHHHHHHHhCCCEEEEEeCChhHh-----------------hhhh-h--ccCCHHHHHhcCCEEEEeCCCcHHHHHH
Confidence            999999999999999999999875431                 0010 1  1247999999999999999999999999


Q ss_pred             cCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCC-------------CCCcccCCCceEEcc
Q 017490          267 VNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFD-------------PNDPILKFKNVLITP  333 (370)
Q Consensus       267 i~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~-------------~~~pL~~~~nvilTP  333 (370)
                      ++++.|++||+|++|||+|||++||++||+++|++|+|+||+||||++||++             ..+|||++|||++||
T Consensus       216 i~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilTP  295 (330)
T PRK12480        216 FDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTP  295 (330)
T ss_pred             HhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEECC
Confidence            9999999999999999999999999999999999999999999999999962             124799999999999


Q ss_pred             CCCCccHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 017490          334 HVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL  366 (370)
Q Consensus       334 Hia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~  366 (370)
                      |+||+|.++.+++.+.+++|+.+|++|++..+.
T Consensus       296 Hia~~t~~~~~~~~~~~~~n~~~~~~~~~~~~~  328 (330)
T PRK12480        296 HIAFFSDEAVQNLVEGGLNAALSVINTGTCETR  328 (330)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence            999999999999999999999999999887754

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=4.2e-64  Score=517.92  Aligned_cols=303  Identities=32%  Similarity=0.523  Sum_probs=264.7

Q ss_pred             cEEEEeCCCCCCchhhHHHHHhcCCCceeee---CCCCChhhhcCcceEEEEe-CCCCCHHHHhcCCCCeEEEEeCcccC
Q 017490           37 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDV---VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLE  112 (370)
Q Consensus        37 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d  112 (370)
                      |||+++.+..+   .. .+.++..+++++..   .+.+++.+.+.++|+++++ ..++++++++++|+||||++.|+|+|
T Consensus         1 m~ili~~~~~~---~~-~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d   76 (526)
T PRK13581          1 MKVLVSDPISP---AG-LEILKDAPGVEVDVKTGLDKEELLEIIGDYDALIVRSATKVTAEVLEAAKNLKVIGRAGVGVD   76 (526)
T ss_pred             CeEEEeCCCCH---HH-HHHHhccCCeEEEeCCCCCHHHHHHHhcCCCEEEEcCCCCCCHHHHhhCCCCeEEEECCcccc
Confidence            47888875432   22 23444434455442   2345677888999988775 46899999999999999999999999


Q ss_pred             ccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC--CCcccccCceEEEEecCchhH
Q 017490          113 GVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PTGETLLGKTVFILGFGNIGV  190 (370)
Q Consensus       113 ~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~--~~~~~l~g~tvGIiGlG~IG~  190 (370)
                      +||+++|+++||.|+|+||+   |+.+||||++++||+++|+++.+++.+++|.|..  ..+.+|.||||||||+|.||+
T Consensus        77 ~id~~~~~~~gI~V~n~p~~---~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~  153 (526)
T PRK13581         77 NVDVPAATRRGIIVVNAPTG---NTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELYGKTLGIIGLGRIGS  153 (526)
T ss_pred             cccHHHHHHCCCEEEeCCCC---ChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccCCCEEEEECCCHHHH
Confidence            99999999999999999998   7899999999999999999999999999999964  357899999999999999999


Q ss_pred             HHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEEEeccCChhhhcccCH
Q 017490          191 ELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTAGIVNK  269 (370)
Q Consensus       191 ~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~lP~t~~t~~li~~  269 (370)
                      .+|+++++|||+|++|||+.....                   ....+ ...++++++++||+|++|+|++++|++++++
T Consensus       154 ~vA~~l~~fG~~V~~~d~~~~~~~-------------------~~~~g~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~  214 (526)
T PRK13581        154 EVAKRAKAFGMKVIAYDPYISPER-------------------AAQLGVELVSLDELLARADFITLHTPLTPETRGLIGA  214 (526)
T ss_pred             HHHHHHHhCCCEEEEECCCCChhH-------------------HHhcCCEEEcHHHHHhhCCEEEEccCCChHhhcCcCH
Confidence            999999999999999998643210                   00111 2347999999999999999999999999999


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceEEccCCCCccHHHHHHHHHH
Q 017490          270 SFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKV  349 (370)
Q Consensus       270 ~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~  349 (370)
                      +.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++ ++|||++|||++|||+||+|.+++.++++.
T Consensus       215 ~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~-~~pL~~~~nvilTPHia~~t~e~~~~~~~~  293 (526)
T PRK13581        215 EELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPT-DSPLFELPNVVVTPHLGASTAEAQENVAIQ  293 (526)
T ss_pred             HHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCC-CchhhcCCCeeEcCccccchHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999975 899999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCc
Q 017490          350 VGDVALQLHAGTPLTGL  366 (370)
Q Consensus       350 ~~~ni~~~~~g~~~~~~  366 (370)
                      +++|+.+|++|+++.+.
T Consensus       294 ~~~ni~~~~~g~~~~~~  310 (526)
T PRK13581        294 VAEQVIDALRGGPVPNA  310 (526)
T ss_pred             HHHHHHHHHcCCCcCce
Confidence            99999999999987654

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=100.00  E-value=9e-64  Score=515.35  Aligned_cols=275  Identities=30%  Similarity=0.517  Sum_probs=250.9

Q ss_pred             CCCChhhhcCcceEEEEeC-CCCCHHHHhcCCCCeEEEEeCcccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHH
Q 017490           69 PISDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL  147 (370)
Q Consensus        69 ~~~~~~~~~~~~d~~i~~~-~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~  147 (370)
                      +.+++.+.++++|+++++. .++++++++++|+||||++.|+|+|+||+++|+++||.|+|+||+   |+.+||||++++
T Consensus        30 ~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~---~~~~vAE~~~~l  106 (525)
T TIGR01327        30 SREELLEIIPDYDALIVRSATKVTEEVIAAAPKLKVIGRAGVGVDNIDIEAATARGILVVNAPTG---NTISAAEHALAM  106 (525)
T ss_pred             CHHHHHHHhcCCCEEEEcCCCCcCHHHHhhCCCceEEEECCcccchhcHHHHHHCCCEEEeCCCc---ChHHHHHHHHHH
Confidence            3566778889999887754 689999999999999999999999999999999999999999998   889999999999


Q ss_pred             HHHHHHhHHHHHHHHHhcccCC--CCcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhh
Q 017490          148 MLGLLRKQNEMRMAIEQKKLGV--PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAV  225 (370)
Q Consensus       148 ~L~~~R~~~~~~~~~~~~~~~~--~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~  225 (370)
                      ||+++|+++.+++.+++|.|..  ..+.+|.||||||||+|.||+++|++|++|||+|++||++.....           
T Consensus       107 ~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~-----------  175 (525)
T TIGR01327       107 LLAAARNIPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPER-----------  175 (525)
T ss_pred             HHHHhcCHHHHHHHHHcCCccccccCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhH-----------
Confidence            9999999999999999999964  257899999999999999999999999999999999998633210           


Q ss_pred             ccccccccccccC-C-CCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 017490          226 KNGIIDDLVDEKG-C-HEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGH  303 (370)
Q Consensus       226 ~~~~~~~~~~~~~-~-~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~  303 (370)
                              ....+ . ..++++++++||+|++|+|++++|+++||++.|++||+|++|||+|||++||++||++||++|+
T Consensus       176 --------~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~  247 (525)
T TIGR01327       176 --------AEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGH  247 (525)
T ss_pred             --------HHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCC
Confidence                    01111 1 2479999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEecCCCCCCCCCCcccCCCceEEccCCCCccHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 017490          304 LGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL  366 (370)
Q Consensus       304 i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~  366 (370)
                      |+||+||||++||+ +++|||++|||++|||+||+|.+++.++++.+++|+.+|++|+++.+.
T Consensus       248 i~gAaLDVf~~EP~-~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~  309 (525)
T TIGR01327       248 VRAAALDVFEKEPP-TDNPLFDLDNVIATPHLGASTREAQENVATQVAEQVLDALKGLPVPNA  309 (525)
T ss_pred             eeEEEEecCCCCCC-CCChhhcCCCeEECCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCce
Confidence            99999999999994 689999999999999999999999999999999999999999987643

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=100.00  E-value=2e-63  Score=468.38  Aligned_cols=297  Identities=28%  Similarity=0.447  Sum_probs=262.7

Q ss_pred             EEEEeCCCCCCchhhHHHHHhcCC-Cceee-eCCCCChhhhcCcceEEEE-eCCCCCHHHHh-cCCCCeEEEEeCcccCc
Q 017490           38 RVLFCGPHFPASHNYTKEYLQNYP-SIQVD-VVPISDVPDVIANYHLCVV-KTMRLDSNCIS-RANQMKLIMQFGVGLEG  113 (370)
Q Consensus        38 ~vl~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~d~~i~-~~~~~~~~~l~-~~~~Lk~I~~~~~G~d~  113 (370)
                      +||++.+.-..   - .+.++... .+++. ....||+...++++|++++ +.+++++++|+ ...+||+|+++++|+||
T Consensus         8 ~il~~e~~~~~---~-~~~l~~~g~~v~~~~~~~~eel~~~i~~~~aviVrs~tkvtadvl~aa~~~lkvVgrag~G~dN   83 (406)
T KOG0068|consen    8 KILVAESLDQA---C-IEILKDNGYQVEFKKNLSLEELIEKIKDCDALIVRSKTKVTADVLEAAAGGLKVVGRAGIGVDN   83 (406)
T ss_pred             eEEEecccchH---H-HHHHHhcCceEEEeccCCHHHHHHHhccCCEEEEEeCCeecHHHHHhhcCCeEEEEecccCccc
Confidence            78888765322   1 23444432 33332 3455688899999997665 57899999999 56789999999999999


Q ss_pred             cchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC--CCcccccCceEEEEecCchhHH
Q 017490          114 VDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PTGETLLGKTVFILGFGNIGVE  191 (370)
Q Consensus       114 id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~--~~~~~l~g~tvGIiGlG~IG~~  191 (370)
                      +|+++++++||.|.|+|.+   |+.++||+++++++++.|++.+....+++|+|..  ..|.+++|||+||+|+|.||++
T Consensus        84 VDL~AAte~gi~Vvn~P~~---Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~~G~el~GKTLgvlG~GrIGse  160 (406)
T KOG0068|consen   84 VDLKAATENGILVVNTPTA---NSRSAAELTIGLILSLARQIGQASASMKEGKWNRVKYLGWELRGKTLGVLGLGRIGSE  160 (406)
T ss_pred             cChhhHHhCCeEEEeCCCC---ChHHHHHHHHHHHHHHhhhcchhheeeecCceeecceeeeEEeccEEEEeecccchHH
Confidence            9999999999999999998   8899999999999999999999999999999974  4789999999999999999999


Q ss_pred             HHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEEEeccCChhhhcccCHH
Q 017490          192 LAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTAGIVNKS  270 (370)
Q Consensus       192 vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~  270 (370)
                      +|++++++||+|++||+-...                   +....++ ...+++|+++.||+|++|+|++|+|++|+|.+
T Consensus       161 VA~r~k~~gm~vI~~dpi~~~-------------------~~~~a~gvq~vsl~Eil~~ADFitlH~PLtP~T~~lin~~  221 (406)
T KOG0068|consen  161 VAVRAKAMGMHVIGYDPITPM-------------------ALAEAFGVQLVSLEEILPKADFITLHVPLTPSTEKLLNDE  221 (406)
T ss_pred             HHHHHHhcCceEEeecCCCch-------------------HHHHhccceeeeHHHHHhhcCEEEEccCCCcchhhccCHH
Confidence            999999999999999986432                   1223333 45789999999999999999999999999999


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCC--CCcccCCCceEEccCCCCccHHHHHHHHH
Q 017490          271 FLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDP--NDPILKFKNVLITPHVGGVTEHSYRSMAK  348 (370)
Q Consensus       271 ~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~--~~pL~~~~nvilTPHia~~t~~~~~~~~~  348 (370)
                      .|++||+|..+||+|||++||++||++||++|+++||++|||+.||...  ++.|.+||||++|||+|++|.|++.+++.
T Consensus       222 tfA~mKkGVriIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EAq~~iai  301 (406)
T KOG0068|consen  222 TFAKMKKGVRIINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEAQSRIAI  301 (406)
T ss_pred             HHHHhhCCcEEEEecCCceechHHHHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999654  78999999999999999999999999999


Q ss_pred             HHHHHHHHHHcC
Q 017490          349 VVGDVALQLHAG  360 (370)
Q Consensus       349 ~~~~ni~~~~~g  360 (370)
                      .+++++..|.+|
T Consensus       302 evaea~~~~~~~  313 (406)
T KOG0068|consen  302 EVAEAVSDYING  313 (406)
T ss_pred             HHHHHHHHHhcc
Confidence            999999999998

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=100.00  E-value=6e-62  Score=471.47  Aligned_cols=300  Identities=22%  Similarity=0.340  Sum_probs=253.0

Q ss_pred             cEEEEeCCCCCCchhhHHHHHhcCCCceeeeCCCCChhhhcCcceEEEEeCCCCCHHHHhcCCCCeEEEEeCcccCccch
Q 017490           37 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDI  116 (370)
Q Consensus        37 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~  116 (370)
                      |.+++..+... ...+...+.+..|++++..++.++    ..++|+++++..  +.++++ .|+||||++.|+|+|++|.
T Consensus         1 ~~~~~~~~~~~-~~~~~~~l~~~~p~~~~~~~~~~~----~~~a~~~~~~~~--~~~~l~-~~~Lk~I~~~~aG~d~i~~   72 (312)
T PRK15469          1 MDIIFYHPTFD-TQWWIEALRKALPQARVRAWKSGD----NDPADYALVWHP--PVEMLA-GRDLKAVFALGAGVDSILS   72 (312)
T ss_pred             CEEEEeCCccC-HHHHHHHHHHHCCCCeEEecCCCC----CccCeEEEEeCC--ChHHhc-cCCceEEEEcccccchhhh
Confidence            36777776532 233444444556777765444333    467898877653  567776 5899999999999999983


Q ss_pred             hh-----HhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEecCchhHH
Q 017490          117 NA-----ATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVE  191 (370)
Q Consensus       117 ~~-----~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~  191 (370)
                      +.     +.++||.|+|+++.  +|+.+||||++++||++.|++..+...++.+.|....+.++.|+||||||+|.||+.
T Consensus        73 ~~~~~~~~~~~~i~v~~~~~~--~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~~~~~l~g~tvgIvG~G~IG~~  150 (312)
T PRK15469         73 KLQAHPEMLDPSVPLFRLEDT--GMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPLPEYHREDFTIGILGAGVLGSK  150 (312)
T ss_pred             hhccccccCCCCceEEEecCC--cccHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCCCCCCCcCCCEEEEECCCHHHHH
Confidence            22     44589999998764  277999999999999999999999999999999866667899999999999999999


Q ss_pred             HHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHH
Q 017490          192 LAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSF  271 (370)
Q Consensus       192 vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~  271 (370)
                      +|++|++|||+|++||++.+..                  ..........++++++++||+|++|+|+|++|+++|+++.
T Consensus       151 vA~~l~afG~~V~~~~~~~~~~------------------~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~  212 (312)
T PRK15469        151 VAQSLQTWGFPLRCWSRSRKSW------------------PGVQSFAGREELSAFLSQTRVLINLLPNTPETVGIINQQL  212 (312)
T ss_pred             HHHHHHHCCCEEEEEeCCCCCC------------------CCceeecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHH
Confidence            9999999999999999865431                  0111112346899999999999999999999999999999


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceEEccCCCCccHHHHHHHHHHHH
Q 017490          272 LSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVG  351 (370)
Q Consensus       272 l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~  351 (370)
                      |++||+|++|||+|||++||++||++||++|+|+||+||||++||+|+++|||++|||++|||+||.|.+.  ++.+.+.
T Consensus       213 l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~nvi~TPHiag~t~~~--~~~~~~~  290 (312)
T PRK15469        213 LEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHPRVAITPHVAAVTRPA--EAVEYIS  290 (312)
T ss_pred             HhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCCCeEECCcCCCCcCHH--HHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999875  6889999


Q ss_pred             HHHHHHHcCCCCCCc
Q 017490          352 DVALQLHAGTPLTGL  366 (370)
Q Consensus       352 ~ni~~~~~g~~~~~~  366 (370)
                      +|+++|.+|+++.|.
T Consensus       291 ~n~~~~~~g~~~~~~  305 (312)
T PRK15469        291 RTIAQLEKGERVCGQ  305 (312)
T ss_pred             HHHHHHHcCCCCccc
Confidence            999999999998654

>PRK08605 D-lactate dehydrogenase; Validated

Probab=100.00  E-value=1.2e-60  Score=466.68  Aligned_cols=294  Identities=21%  Similarity=0.347  Sum_probs=254.7

Q ss_pred             hhhHHHHHhcCCCceeee---CCCCChhhhcCcceEEEEe-CCCCCHHHHhcCCC--CeEEEEeCcccCccchhhHhcCC
Q 017490           50 HNYTKEYLQNYPSIQVDV---VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQ--MKLIMQFGVGLEGVDINAATRCG  123 (370)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~--Lk~I~~~~~G~d~id~~~~~~~g  123 (370)
                      ..+..++.+.+ ++++..   ...++..+.+.++|+++++ ..++++++++++|+  ||+|++.|+|+|+||+++|+++|
T Consensus        14 ~~~~~~~~~~~-~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~~~~~G~d~id~~~~~~~g   92 (332)
T PRK08605         14 APYIKAWAEKH-HVEVDLTKEALTDDNVEEVEGFDGLSLSQQIPLSEAIYKLLNELGIKQIAQRSAGFDTYDLELATKYN   92 (332)
T ss_pred             HHHHHHHHHhc-CeEEEEecCCCCHHHHHHhcCCCEEEEecCCCCCHHHHHhhhhcCceEEEEcccccchhhHHHHHHCC
Confidence            45555555554 444322   2234556778899987664 57999999999997  99999999999999999999999


Q ss_pred             eEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC---CCcccccCceEEEEecCchhHHHHHHh-ccC
Q 017490          124 IKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV---PTGETLLGKTVFILGFGNIGVELAKRL-RPF  199 (370)
Q Consensus       124 I~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~---~~~~~l~g~tvGIiGlG~IG~~vA~~l-~~~  199 (370)
                      |.|+|+||+   |+.+||||++++||+++|++..+++.++++.|..   ..+++|+|++|||||+|.||+++|++| ++|
T Consensus        93 i~v~n~~~~---~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~~  169 (332)
T PRK08605         93 LIISNVPSY---SPESIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPPILSRSIKDLKVAVIGTGRIGLAVAKIFAKGY  169 (332)
T ss_pred             CEEEeCCCC---ChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcccccccccceeCCCEEEEECCCHHHHHHHHHHHhcC
Confidence            999999998   7899999999999999999999999999987642   247899999999999999999999999 789


Q ss_pred             CCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCc
Q 017490          200 GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGS  279 (370)
Q Consensus       200 G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga  279 (370)
                      ||+|++||++.....                ...+   ....++++++++||+|++|+|++++|+++++++.++.||+|+
T Consensus       170 g~~V~~~d~~~~~~~----------------~~~~---~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~ga  230 (332)
T PRK08605        170 GSDVVAYDPFPNAKA----------------ATYV---DYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGA  230 (332)
T ss_pred             CCEEEEECCCccHhH----------------Hhhc---cccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCc
Confidence            999999998754310                0111   023489999999999999999999999999999999999999


Q ss_pred             EEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCC--CCCCC-----------cccCCCceEEccCCCCccHHHHHHH
Q 017490          280 LLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEP--FDPND-----------PILKFKNVLITPHVGGVTEHSYRSM  346 (370)
Q Consensus       280 ilIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP--l~~~~-----------pL~~~~nvilTPHia~~t~~~~~~~  346 (370)
                      +|||+|||.++|+++|+++|++|+|+||+||||++||  +|.++           +||++|||++|||+||+|.++.+++
T Consensus       231 ilIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~e~~~~~  310 (332)
T PRK08605        231 VFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTPHIAFYTDAAVKNL  310 (332)
T ss_pred             EEEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEEECCcccccHHHHHHHH
Confidence            9999999999999999999999999999999999998  45554           4999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCCc
Q 017490          347 AKVVGDVALQLHAGTPLTGL  366 (370)
Q Consensus       347 ~~~~~~ni~~~~~g~~~~~~  366 (370)
                      .+.+++|+.+|++|++..+.
T Consensus       311 ~~~~~~n~~~~~~g~~~~~~  330 (332)
T PRK08605        311 IVDALDATLEVLQTGTTRLR  330 (332)
T ss_pred             HHHHHHHHHHHHcCCCCCCC
Confidence            99999999999999877654

>PRK06436 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=1.9e-58  Score=444.95  Aligned_cols=253  Identities=23%  Similarity=0.369  Sum_probs=226.4

Q ss_pred             cCcceEEEEeCCCCCHHHHhcCCCCeEEEEeCcccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHH
Q 017490           77 IANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQN  156 (370)
Q Consensus        77 ~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~  156 (370)
                      ..++|+++....      +..+|+||||++.|+|+|+||+++|+++||.++|. |+   |+.+||||++++||+++|++.
T Consensus        32 ~~~a~~~~~~~~------~~~~~~Lk~I~~~~aG~D~id~~~~~~~~i~~~~~-g~---~~~~VAE~~l~l~L~l~R~i~  101 (303)
T PRK06436         32 YYDAEAILIKGR------YVPGKKTKMIQSLSAGVDHIDVSGIPENVVLCSNA-GA---YSISVAEHAFALLLAWAKNIC  101 (303)
T ss_pred             cCCCCEEEecCC------cCCCCCeEEEEECCcccCcccHHHHHhCCeEEEcC-CC---CcHHHHHHHHHHHHHHHcChH
Confidence            457787755432      23468999999999999999999999999988875 54   678999999999999999999


Q ss_pred             HHHHHHHhcccCCCCcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccc
Q 017490          157 EMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE  236 (370)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (370)
                      .+++.+++|.|....+++|.||||||||+|.||+++|+++++|||+|++|||+..+.                   ....
T Consensus       102 ~~~~~~~~g~w~~~~~~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------------------~~~~  162 (303)
T PRK06436        102 ENNYNMKNGNFKQSPTKLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVND-------------------GISS  162 (303)
T ss_pred             HHHHHHHcCCCCCCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCccc-------------------Cccc
Confidence            999999999998767789999999999999999999999999999999999874321                   1111


Q ss_pred             cCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCC
Q 017490          237 KGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEP  316 (370)
Q Consensus       237 ~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP  316 (370)
                        ...++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||+++|+++|+++|++|++.||+||||++||
T Consensus       163 --~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP  240 (303)
T PRK06436        163 --IYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEP  240 (303)
T ss_pred             --ccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCC
Confidence              135899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcccCCCceEEccCCC-CccHHHHHHHHHHHHHHHHHHHcCCCC
Q 017490          317 FDPNDPILKFKNVLITPHVG-GVTEHSYRSMAKVVGDVALQLHAGTPL  363 (370)
Q Consensus       317 l~~~~pL~~~~nvilTPHia-~~t~~~~~~~~~~~~~ni~~~~~g~~~  363 (370)
                      +++++   .+|||++|||++ ++|.++.+++.+.+++|+.+|++|+++
T Consensus       241 ~~~~~---~~~nviiTPHi~g~~t~e~~~~~~~~~~~ni~~~~~g~~~  285 (303)
T PRK06436        241 IITET---NPDNVILSPHVAGGMSGEIMQPAVALAFENIKNFFEGKPK  285 (303)
T ss_pred             CCccC---CCCCEEECCccccccCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            98776   689999999986 589999999999999999999999874

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=100.00  E-value=6.7e-59  Score=446.72  Aligned_cols=272  Identities=36%  Similarity=0.549  Sum_probs=243.1

Q ss_pred             hhhhcCcceEEEEe--CCCCCHHHHhcC-CCCeEEEEeCcccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHH
Q 017490           73 VPDVIANYHLCVVK--TMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML  149 (370)
Q Consensus        73 ~~~~~~~~d~~i~~--~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L  149 (370)
                      +...+.+....+..  ...++.+.+.+. |+||+|.++|+|+||||+++|++|||+|+|+|+.   +..+|||++++++|
T Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~---~~~~vAd~~~~lil  130 (336)
T KOG0069|consen   54 FLKRIADSRIAISVPFTGAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDV---LTDDVADLAVSLLL  130 (336)
T ss_pred             hhhhccceeeeeecccchHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCc---chHHHHHHHHHHHH
Confidence            34445555444332  456677777775 9999999999999999999999999999999998   66899999999999


Q ss_pred             HHHHhHHHHHHHHHhcccCC----CCcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhh
Q 017490          150 GLLRKQNEMRMAIEQKKLGV----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAV  225 (370)
Q Consensus       150 ~~~R~~~~~~~~~~~~~~~~----~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~  225 (370)
                      .++|++...++++++|.|..    +.+..+.||||||+|+|+||+.+|++|++|||.+.+++|++.+..           
T Consensus       131 ~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~-----------  199 (336)
T KOG0069|consen  131 ALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPE-----------  199 (336)
T ss_pred             HHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchh-----------
Confidence            99999999999999999842    357889999999999999999999999999988999988765421           


Q ss_pred             ccccccccccccC-CCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 017490          226 KNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHL  304 (370)
Q Consensus       226 ~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i  304 (370)
                             ...++. ...++++++.+||+|++|||+|++|+++||++.|++||+|++|||++||+++|++++++||++|+|
T Consensus       200 -------~~~~~~~~~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i  272 (336)
T KOG0069|consen  200 -------EAYEYYAEFVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKI  272 (336)
T ss_pred             -------hHHHhcccccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCc
Confidence                   111222 357999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEecCCCCCCCCCCcccCCCceEEccCCCCccHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 017490          305 GGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL  366 (370)
Q Consensus       305 ~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~  366 (370)
                      .+||||||++|| +.++||++++||++|||+|+.|.+++.+|++.+++|+.+++.|+++...
T Consensus       273 ~~aGlDVf~~EP-~~~~~l~~~dnvv~~PHigs~t~~t~~~m~~~v~~n~~~~~~g~~~~~~  333 (336)
T KOG0069|consen  273 AGAGLDVFEPEP-PVDHPLLTLDNVVILPHIGSATLETREKMAEIVLNNLLAFFSGKPLLTP  333 (336)
T ss_pred             ccccccccCCCC-CCCcchhcccceeEecccccCcHHHHHHHHHHHHHHHHHHHccCCCCCc
Confidence            999999999999 8999999999999999999999999999999999999999999987654

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=100.00  E-value=6.1e-58  Score=452.50  Aligned_cols=277  Identities=19%  Similarity=0.314  Sum_probs=239.5

Q ss_pred             cEEEEeCCCCCCchhhHHHHHhcCCCceeeeCCCCC-hhhhcCcceEEEEeC-CCCCHHHHhcCCCCeEEEEeCcccCcc
Q 017490           37 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISD-VPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGV  114 (370)
Q Consensus        37 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~-~~~~~~~l~~~~~Lk~I~~~~~G~d~i  114 (370)
                      |||++.... |    +..++++.+..+  ...+..+ ..+.+.++|+++++. .++++++++ .|+||||+++++|+|||
T Consensus         1 mkI~~d~~~-p----~~~~~~~~~~~v--~~~~~~~~~~~~l~daD~liv~~~t~v~~~ll~-~~~Lk~I~~~~~G~D~i   72 (381)
T PRK00257          1 MKIVADENI-P----LLDAFFAGFGEI--RRLPGRAFDRAAVRDADVLLVRSVTRVDRALLE-GSRVRFVGTCTIGTDHL   72 (381)
T ss_pred             CEEEEecCc-h----hHHHHHhhCCcE--EEcCCcccCHHHhCCceEEEEeCCCCCCHHHhc-CCCCeEEEECCcccccc
Confidence            688887654 2    334555554433  3333223 356788999887754 689999998 58999999999999999


Q ss_pred             chhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEecCchhHHHHH
Q 017490          115 DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAK  194 (370)
Q Consensus       115 d~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~  194 (370)
                      |+++++++||.|+|+||+   |+.+||||++++||++.|+                .+.++.||||||||+|+||+.+|+
T Consensus        73 D~~~~~~~gI~v~napg~---na~aVAE~v~~~lL~l~r~----------------~g~~l~gktvGIIG~G~IG~~va~  133 (381)
T PRK00257         73 DLDYFAEAGITWSSAPGC---NARGVVDYVLGSLLTLAER----------------EGVDLAERTYGVVGAGHVGGRLVR  133 (381)
T ss_pred             CHHHHHHCCCEEEECCCc---ChHHHHHHHHHHHHHHhcc----------------cCCCcCcCEEEEECCCHHHHHHHH
Confidence            999999999999999998   8899999999999999885                257899999999999999999999


Q ss_pred             HhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCCh----hhhcccCHH
Q 017490          195 RLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNK----QTAGIVNKS  270 (370)
Q Consensus       195 ~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~----~t~~li~~~  270 (370)
                      ++++|||+|++||+.....                  +.   .....++++++++||+|++|+|+|+    +|++|||++
T Consensus       134 ~l~a~G~~V~~~Dp~~~~~------------------~~---~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~  192 (381)
T PRK00257        134 VLRGLGWKVLVCDPPRQEA------------------EG---DGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEA  192 (381)
T ss_pred             HHHHCCCEEEEECCccccc------------------cc---CccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHH
Confidence            9999999999999853220                  00   0124689999999999999999998    599999999


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceEEccCCCCccHHHHHHHHHHH
Q 017490          271 FLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVV  350 (370)
Q Consensus       271 ~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~  350 (370)
                      .|++||+|++|||+|||++||++||+++|++|++.||+||||++||. +++|||.. |+++|||+||+|.++..++.+.+
T Consensus       193 ~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~-~~~~L~~~-nvi~TPHiAg~s~e~~~r~~~~~  270 (381)
T PRK00257        193 FLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQ-IDLELADL-CTIATPHIAGYSLDGKARGTAQI  270 (381)
T ss_pred             HHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCC-CChhhhhC-CEEEcCccccCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999995 67899985 99999999999999999999999


Q ss_pred             HHHHHHHHcCCCC
Q 017490          351 GDVALQLHAGTPL  363 (370)
Q Consensus       351 ~~ni~~~~~g~~~  363 (370)
                      ++|+.+|+++.+.
T Consensus       271 ~~nl~~~~~~~~~  283 (381)
T PRK00257        271 YQALCRFFGIPAR  283 (381)
T ss_pred             HHHHHHHHcCCCc
Confidence            9999999988754

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=100.00  E-value=5.7e-58  Score=451.49  Aligned_cols=276  Identities=24%  Similarity=0.342  Sum_probs=235.9

Q ss_pred             cEEEEeCCCCCCchhhHHHHHhcCCCceeeeCCCCChhhhcCcceEEEEe-CCCCCHHHHhcCCCCeEEEEeCcccCccc
Q 017490           37 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLEGVD  115 (370)
Q Consensus        37 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id  115 (370)
                      |||++.... +    +..++++.+.++.... ..+...+.+.++|+++++ .+++++++++ .|+||+|+++++|+||||
T Consensus         1 mkIl~d~~~-~----~~~~~~~~~~ev~~~~-~~~~~~~~l~daD~liv~s~t~v~~~ll~-~~~Lk~I~~~~~G~D~iD   73 (378)
T PRK15438          1 MKILVDENM-P----YARELFSRLGEVKAVP-GRPIPVAQLADADALMVRSVTKVNESLLA-GKPIKFVGTATAGTDHVD   73 (378)
T ss_pred             CEEEEeCCc-c----hHHHHHhhcCcEEEeC-CCCCCHHHhCCCcEEEEcCCCCCCHHHhc-CCCCeEEEECcccccccC
Confidence            588887543 3    3345555543333322 223345668899998875 4689999986 699999999999999999


Q ss_pred             hhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEecCchhHHHHHH
Q 017490          116 INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKR  195 (370)
Q Consensus       116 ~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~  195 (370)
                      +++++++||.|+|+||+   |+.+||||++++||++.|+                .+.+|.||||||||+|+||+.+|++
T Consensus        74 ~~~~~~~gI~v~napg~---na~aVAE~~~~~lL~l~r~----------------~g~~L~gktvGIIG~G~IG~~vA~~  134 (378)
T PRK15438         74 EAWLKQAGIGFSAAPGC---NAIAVVEYVFSSLLMLAER----------------DGFSLHDRTVGIVGVGNVGRRLQAR  134 (378)
T ss_pred             HHHHHHCCCEEEECCCc---CchHHHHHHHHHHHHHhcc----------------CCCCcCCCEEEEECcCHHHHHHHHH
Confidence            99999999999999998   8899999999999999985                2468999999999999999999999


Q ss_pred             hccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChh----hhcccCHHH
Q 017490          196 LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQ----TAGIVNKSF  271 (370)
Q Consensus       196 l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~----t~~li~~~~  271 (370)
                      |++|||+|++||+.....                  .   ......++++++++||+|++|+|+|++    |++|+|++.
T Consensus       135 l~a~G~~V~~~dp~~~~~------------------~---~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~  193 (378)
T PRK15438        135 LEALGIKTLLCDPPRADR------------------G---DEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKL  193 (378)
T ss_pred             HHHCCCEEEEECCccccc------------------c---cccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHH
Confidence            999999999999753210                  0   001346899999999999999999996    999999999


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceEEccCCCCccHHHHHHHHHHHH
Q 017490          272 LSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVG  351 (370)
Q Consensus       272 l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~  351 (370)
                      |++||+|++|||+|||++||++||+++|++|++.||+||||++||. ++++||..++ ++|||+||+|.++..++...++
T Consensus       194 l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~-~~~~Ll~~~~-i~TPHiAg~s~e~~~~~~~~~~  271 (378)
T PRK15438        194 IRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPE-LNVELLKKVD-IGTPHIAGYTLEGKARGTTQVF  271 (378)
T ss_pred             HhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCC-CchhhhhcCC-EECCccCcCcHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999995 6778987765 9999999999999999999999


Q ss_pred             HHHHHHHcCCC
Q 017490          352 DVALQLHAGTP  362 (370)
Q Consensus       352 ~ni~~~~~g~~  362 (370)
                      +|+.+|+ |.+
T Consensus       272 ~~l~~~~-~~~  281 (378)
T PRK15438        272 EAYSKFI-GHE  281 (378)
T ss_pred             HHHHHHH-cCc
Confidence            9999998 444

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=100.00  E-value=5.2e-49  Score=352.68  Aligned_cols=174  Identities=39%  Similarity=0.619  Sum_probs=153.9

Q ss_pred             HHHHHHHHHhHHHHHHHHHhccc---CCCCcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccc
Q 017490          145 IYLMLGLLRKQNEMRMAIEQKKL---GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSS  221 (370)
Q Consensus       145 l~~~L~~~R~~~~~~~~~~~~~~---~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~  221 (370)
                      +++||++.|++..++..++++.|   ....+++++|+||||||+|.||+.+|+++++|||+|++|||+..+..       
T Consensus         1 i~l~L~~~R~~~~~~~~~~~~~W~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~-------   73 (178)
T PF02826_consen    1 IALMLALLRRLPEYHEAQRNGEWASRERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE-------   73 (178)
T ss_dssp             HHHHHHHHTTHHHHHHHHHTTBHHHHTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH-------
T ss_pred             ChHHHHHHhCHHHHHHHHHcCCCCCCcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh-------
Confidence            58999999999999999999999   56678999999999999999999999999999999999999876421       


Q ss_pred             hhhhccccccccccccC-CCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 017490          222 ALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE  300 (370)
Q Consensus       222 ~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~  300 (370)
                                 .....+ ...++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||+++|+
T Consensus        74 -----------~~~~~~~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~  142 (178)
T PF02826_consen   74 -----------GADEFGVEYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALE  142 (178)
T ss_dssp             -----------HHHHTTEEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred             -----------hcccccceeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHh
Confidence                       011111 35699999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCceEEEEecCCCCCCCCCCcccCCCceEEccCCC
Q 017490          301 CGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVG  336 (370)
Q Consensus       301 ~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia  336 (370)
                      +|+++||+||||++||+++++|||++|||++|||+|
T Consensus       143 ~g~i~ga~lDV~~~EP~~~~~~l~~~~nvi~TPH~a  178 (178)
T PF02826_consen  143 SGKIAGAALDVFEPEPLPADSPLWDLPNVILTPHIA  178 (178)
T ss_dssp             TTSEEEEEESS-SSSSSSTTHHHHTSTTEEEESS-T
T ss_pred             hccCceEEEECCCCCCCCCCChHHcCCCEEEeCccC
Confidence            999999999999999999999999999999999986

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>KOG0067 consensus Transcription factor CtBP [Transcription]

Probab=99.97  E-value=3.6e-30  Score=245.77  Aligned_cols=251  Identities=25%  Similarity=0.392  Sum_probs=220.9

Q ss_pred             eCCCCCHHHHhcCCCCeEEEEeCcccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhc
Q 017490           86 KTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQK  165 (370)
Q Consensus        86 ~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~  165 (370)
                      .+..++++.+++++.||++.+.|.|+|++|+.+|.+.||.|||.|+.   ..+.+|+-++.++|.++|+-....+..+++
T Consensus        81 h~i~l~reDlEkfkalRv~~rig~g~dn~dikaAseL~iavC~ip~~---~Ve~~a~stl~hIl~l~rrntw~cq~l~eg  157 (435)
T KOG0067|consen   81 HTITLPREDLEKFKALRVIVRIGSGYDNIDIKAASELGIAVCNIPSD---AVEETADSTLCHILNLYRRNTWLCQALREG  157 (435)
T ss_pred             eecccchhhHHHhhhhceeeeeccccchhhhhhhhhheeeeecccch---hHHHHHHHHHHHHHhhhcccchhhhhhccc
Confidence            35788999999999999999999999999999999999999999997   347899999999999999999999999998


Q ss_pred             ccCCC---------CcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccc
Q 017490          166 KLGVP---------TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE  236 (370)
Q Consensus       166 ~~~~~---------~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (370)
                      .|...         .....+|.++|++|+|.+|++++.++++||+.|+.||++....                   .-..
T Consensus       158 ~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~~~g-------------------~~~~  218 (435)
T KOG0067|consen  158 TCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYLIDG-------------------IDKS  218 (435)
T ss_pred             ceeechhhhhhhhhccccccccceeeeccccccceehhhhhcccceeeeecchhhhh-------------------hhhh
Confidence            87532         2356899999999999999999999999999999999875431                   1111


Q ss_pred             cC--CCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCC
Q 017490          237 KG--CHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWT  314 (370)
Q Consensus       237 ~~--~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~  314 (370)
                      .+  ..-++++++-++|.+++||-+++.+.++|+.-.+++|+.|++++|++||+++|+++|.++|++|++.+++      
T Consensus       219 lg~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G~i~~aa------  292 (435)
T KOG0067|consen  219 LGLQRVYTLQDLLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGRIRGAA------  292 (435)
T ss_pred             cccceecccchhhhhccceeeecccCcccccccccccceeecccceEeeecccccCChHHHHhhhccCceeccc------
Confidence            11  2235899999999999999999999999999999999999999999999999999999999999999887      


Q ss_pred             CCC-CCCCcccCCCceEEccCCCCccHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 017490          315 EPF-DPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTG  365 (370)
Q Consensus       315 EPl-~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~  365 (370)
                       |. -...||.+.||.+.|||.+++++.+..++.+.++..+++-+.|+.+..
T Consensus       293 -~~~~~~~~l~d~pn~ic~~~ta~~~e~~~~e~re~aa~eiR~ai~g~ip~~  343 (435)
T KOG0067|consen  293 -PRSFKQGPLKDAPNLICTPHTAWYSEAASVELREVAALEIRRAITGRIPDS  343 (435)
T ss_pred             -CcccccccccCCCCCCCCcccchhhHHHHHHHHHHHhhhhhhccCCCCchh
Confidence             22 134578999999999999999999999999999999998888876543

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=99.85  E-value=7.3e-21  Score=191.48  Aligned_cols=171  Identities=19%  Similarity=0.207  Sum_probs=134.8

Q ss_pred             EeCcccCccc-hhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEe
Q 017490          106 QFGVGLEGVD-INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILG  184 (370)
Q Consensus       106 ~~~~G~d~id-~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiG  184 (370)
                      -+++|+..+- +....+.||+|+|+|++   ++.+++|+++++++++...      .+|.+      +..++|++|+|+|
T Consensus       197 eTttGv~rl~~m~~~g~L~iPV~nv~d~---~tk~~aD~~~G~~~s~~d~------~~R~~------~~~LaGKtVgVIG  261 (476)
T PTZ00075        197 ETTTGVHRLYKMLKKGELLFPAINVNDS---VTKSKFDNIYGCRHSLIDG------IFRAT------DVMIAGKTVVVCG  261 (476)
T ss_pred             cchHHHHHHHHHHHCCCCCceEEEeCCc---chHHHHHHHHHHHHHHHHH------HHHhc------CCCcCCCEEEEEC
Confidence            3466766652 22223458999999998   6799999999999998833      33443      4579999999999


Q ss_pred             cCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhh
Q 017490          185 FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTA  264 (370)
Q Consensus       185 lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~  264 (370)
                      +|.||+.+|+++++|||+|+++++++.....                 .........+++++++.||+|++|.    .++
T Consensus       262 ~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~-----------------A~~~G~~~~~leell~~ADIVI~at----Gt~  320 (476)
T PTZ00075        262 YGDVGKGCAQALRGFGARVVVTEIDPICALQ-----------------AAMEGYQVVTLEDVVETADIFVTAT----GNK  320 (476)
T ss_pred             CCHHHHHHHHHHHHCCCEEEEEeCCchhHHH-----------------HHhcCceeccHHHHHhcCCEEEECC----Ccc
Confidence            9999999999999999999999876543100                 0001112357899999999999984    478


Q ss_pred             cccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCC
Q 017490          265 GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDP  319 (370)
Q Consensus       265 ~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~  319 (370)
                      ++|+++.|+.||+|++|||+||+   |++.++++|+++.    ++||++.||...
T Consensus       321 ~iI~~e~~~~MKpGAiLINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v~  368 (476)
T PTZ00075        321 DIITLEHMRRMKNNAIVGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQVD  368 (476)
T ss_pred             cccCHHHHhccCCCcEEEEcCCC---chHHhHHHHHhcC----CceeecccCCCC
Confidence            89999999999999999999999   7889999998754    789999999643

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=99.82  E-value=5.9e-20  Score=176.37  Aligned_cols=156  Identities=20%  Similarity=0.306  Sum_probs=124.1

Q ss_pred             CCCHHHHhcCCCCeEEEEeCcccCccchh-hHhcCCeEEe------ccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHH
Q 017490           89 RLDSNCISRANQMKLIMQFGVGLEGVDIN-AATRCGIKVA------RIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMA  161 (370)
Q Consensus        89 ~~~~~~l~~~~~Lk~I~~~~~G~d~id~~-~~~~~gI~V~------n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~  161 (370)
                      ++++++++++|   .++...+|+++.|++ .|+++||.|+      |++.+   |+.++||+++.+++..          
T Consensus        81 ~l~~~~l~~~~---~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~---n~~~~Ae~ai~~al~~----------  144 (287)
T TIGR02853        81 VLTPELLESTK---GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIY---NSIPTAEGAIMMAIEH----------  144 (287)
T ss_pred             cccHHHHHhcC---CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEE---ccHhHHHHHHHHHHHh----------
Confidence            35788999888   367778889999998 8999999999      88776   7899999999877743          


Q ss_pred             HHhcccCCCCcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCC
Q 017490          162 IEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHE  241 (370)
Q Consensus       162 ~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (370)
                               .+.+++|++++|+|+|.||+.+|+.|+++|++|++++|+.......              .+.........
T Consensus       145 ---------~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~--------------~~~g~~~~~~~  201 (287)
T TIGR02853       145 ---------TDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARI--------------TEMGLIPFPLN  201 (287)
T ss_pred             ---------cCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH--------------HHCCCeeecHH
Confidence                     1347899999999999999999999999999999999975431000              00000001234


Q ss_pred             CHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490          242 DIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       242 ~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~  288 (370)
                      +++++++++|+|++|+|..     +++++.++.||+++++||++..+
T Consensus       202 ~l~~~l~~aDiVint~P~~-----ii~~~~l~~~k~~aliIDlas~P  243 (287)
T TIGR02853       202 KLEEKVAEIDIVINTIPAL-----VLTADVLSKLPKHAVIIDLASKP  243 (287)
T ss_pred             HHHHHhccCCEEEECCChH-----HhCHHHHhcCCCCeEEEEeCcCC
Confidence            6788899999999999864     67888999999999999999844

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=99.78  E-value=4.6e-19  Score=151.18  Aligned_cols=98  Identities=24%  Similarity=0.406  Sum_probs=75.2

Q ss_pred             EEEeCCCCCCchhhHHHHHhc-CCCceeee-CCCCChhhhcCcceEEEEeCCC-CCHHHHhcCCCCeEEEEeCcccCccc
Q 017490           39 VLFCGPHFPASHNYTKEYLQN-YPSIQVDV-VPISDVPDVIANYHLCVVKTMR-LDSNCISRANQMKLIMQFGVGLEGVD  115 (370)
Q Consensus        39 vl~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~d~~i~~~~~-~~~~~l~~~~~Lk~I~~~~~G~d~id  115 (370)
                      ||++++..+.    ..+.++. + .+.+.. .+.+++.+.++++|+++++..+ +++++++++|+||||++.|+|+|+||
T Consensus         1 ili~~~~~~~----~~~~l~~~~-~v~~~~~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id   75 (133)
T PF00389_consen    1 ILITDPLPDE----EIERLEEGF-EVEFCDSPSEEELAERLKDADAIIVGSGTPLTAEVLEAAPNLKLISTAGAGVDNID   75 (133)
T ss_dssp             EEESSS-SHH----HHHHHHHTS-EEEEESSSSHHHHHHHHTTESEEEESTTSTBSHHHHHHHTT-SEEEESSSSCTTB-
T ss_pred             eEEeccCCHH----HHHHHHCCc-eEEEeCCCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhccceeEEEEEcccccCccc
Confidence            5677654322    3345554 3 444432 2345677889999999987665 99999999999999999999999999


Q ss_pred             hhhHhcCCeEEeccCCCCCCCchhHHHHH
Q 017490          116 INAATRCGIKVARIPGDVTGNAASCAELT  144 (370)
Q Consensus       116 ~~~~~~~gI~V~n~pg~~~~na~~vAE~~  144 (370)
                      +++|+++||.|+|+||+   |+.+||||+
T Consensus        76 ~~~a~~~gI~V~n~~g~---~~~aVAE~a  101 (133)
T PF00389_consen   76 LEAAKERGIPVTNVPGY---NAEAVAEHA  101 (133)
T ss_dssp             HHHHHHTTSEEEE-TTT---THHHHHHHH
T ss_pred             HHHHhhCeEEEEEeCCc---CCcchhccc
Confidence            99999999999999998   789999999

The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=99.64  E-value=2.5e-15  Score=145.09  Aligned_cols=173  Identities=19%  Similarity=0.280  Sum_probs=127.4

Q ss_pred             hhcCcceEEEEeCC-----------------CCCHHHHhcCCCCeEEEEeCcccCccchhhHhcCCeEEeccCCCC---C
Q 017490           75 DVIANYHLCVVKTM-----------------RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDV---T  134 (370)
Q Consensus        75 ~~~~~~d~~i~~~~-----------------~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~---~  134 (370)
                      +.+.++|+++....                 .++++.++.+|++..+. .|.+.++++ +.+.++||.+.+.+...   .
T Consensus        51 ~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~  128 (296)
T PRK08306         51 EALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVAI  128 (296)
T ss_pred             HHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcCCCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhhh
Confidence            44678998875411                 13688999999997544 589999988 78999999999876420   1


Q ss_pred             CCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcccc
Q 017490          135 GNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHS  214 (370)
Q Consensus       135 ~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~  214 (370)
                      -|+.++||.++...+..                   .+..++|++++|+|+|.+|+.+++.|+++|++|.++||+.....
T Consensus       129 ~ns~~~aegav~~a~~~-------------------~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~  189 (296)
T PRK08306        129 LNSIPTAEGAIMMAIEH-------------------TPITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLA  189 (296)
T ss_pred             hccHhHHHHHHHHHHHh-------------------CCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            26788888866543311                   12467899999999999999999999999999999999854311


Q ss_pred             ccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCC
Q 017490          215 QVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg  287 (370)
                      ..              ...........++.+.++++|+|+.++|.     .+++++.++.|++|+++||++..
T Consensus       190 ~~--------------~~~G~~~~~~~~l~~~l~~aDiVI~t~p~-----~~i~~~~l~~~~~g~vIIDla~~  243 (296)
T PRK08306        190 RI--------------TEMGLSPFHLSELAEEVGKIDIIFNTIPA-----LVLTKEVLSKMPPEALIIDLASK  243 (296)
T ss_pred             HH--------------HHcCCeeecHHHHHHHhCCCCEEEECCCh-----hhhhHHHHHcCCCCcEEEEEccC
Confidence            00              00000001224677888999999999884     36788999999999999999864

>PLN02494 adenosylhomocysteinase

Probab=99.61  E-value=9.9e-16  Score=154.18  Aligned_cols=121  Identities=20%  Similarity=0.254  Sum_probs=101.0

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCE
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  252 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  252 (370)
                      ..+.|++|+|+|+|.||+.+|++++++|++|+++++++.+...                 .........+++++++.+|+
T Consensus       250 i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~e-----------------A~~~G~~vv~leEal~~ADV  312 (477)
T PLN02494        250 VMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQ-----------------ALMEGYQVLTLEDVVSEADI  312 (477)
T ss_pred             CccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHH-----------------HHhcCCeeccHHHHHhhCCE
Confidence            3579999999999999999999999999999999987643110                 00000123468899999999


Q ss_pred             EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC-CcccCHHHHHHH--HHhCCceEEEEecCCCC
Q 017490          253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR-GGLLDYEAIAHY--LECGHLGGLGIDVAWTE  315 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR-g~~vd~~aL~~a--L~~g~i~ga~lDV~~~E  315 (370)
                      |+.+    ..++++++.+.|+.||+|++|+|+|| +..||+++|.++  ++.+.++ +.+|+|+.|
T Consensus       313 VI~t----TGt~~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~  373 (477)
T PLN02494        313 FVTT----TGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFP  373 (477)
T ss_pred             EEEC----CCCccchHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcC
Confidence            9873    45788999999999999999999999 689999999998  9999998 999999875

>TIGR00936 ahcY adenosylhomocysteinase

Probab=99.52  E-value=2.3e-14  Score=143.08  Aligned_cols=120  Identities=21%  Similarity=0.272  Sum_probs=99.7

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCC
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKAD  251 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aD  251 (370)
                      ..+.|++|+|+|+|.||+.+|++++++|++|+++|+++.+...                  ....+ ...+++++++.+|
T Consensus       191 ~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~------------------A~~~G~~v~~leeal~~aD  252 (406)
T TIGR00936       191 LLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALE------------------AAMDGFRVMTMEEAAKIGD  252 (406)
T ss_pred             CCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHH------------------HHhcCCEeCCHHHHHhcCC
Confidence            3589999999999999999999999999999999877643110                  01111 2346788899999


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHhCCceEEEEecCCC
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL-LDYEAIAHYLECGHLGGLGIDVAWT  314 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~-vd~~aL~~aL~~g~i~ga~lDV~~~  314 (370)
                      +|+.+..    +.++++.+.|+.||+|++++|+||+.+ ||.++|.+++.+....+..+|+|.-
T Consensus       253 VVItaTG----~~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~  312 (406)
T TIGR00936       253 IFITATG----NKDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL  312 (406)
T ss_pred             EEEECCC----CHHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence            9987643    677899999999999999999999998 9999999999888888899999873

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=99.50  E-value=2.8e-14  Score=137.42  Aligned_cols=93  Identities=28%  Similarity=0.389  Sum_probs=76.2

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCC
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKAD  251 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aD  251 (370)
                      ..|+||||||||+|.||+++|++|+++|++|+++++.....                  +.....+ ...++++++++||
T Consensus        12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~------------------~~A~~~G~~v~sl~Eaak~AD   73 (335)
T PRK13403         12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSF------------------EVAKADGFEVMSVSEAVRTAQ   73 (335)
T ss_pred             hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhh------------------HHHHHcCCEECCHHHHHhcCC
Confidence            57999999999999999999999999999999998653221                  0111111 2348999999999


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCcEEEEc
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNI  284 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~  284 (370)
                      +|++|+|+ ++++++++.+.++.||+|++|+-.
T Consensus        74 VV~llLPd-~~t~~V~~~eil~~MK~GaiL~f~  105 (335)
T PRK13403         74 VVQMLLPD-EQQAHVYKAEVEENLREGQMLLFS  105 (335)
T ss_pred             EEEEeCCC-hHHHHHHHHHHHhcCCCCCEEEEC
Confidence            99999997 677999999999999999988643

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=99.40  E-value=6.5e-13  Score=126.67  Aligned_cols=115  Identities=20%  Similarity=0.302  Sum_probs=98.8

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCCEEEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVC  255 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~l  255 (370)
                      .+||+||+|.||.++|++|...|+.|.+|||++.+..                 +.....+  ...+..++.+++|+|++
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~-----------------~~~~~~Ga~~a~s~~eaa~~aDvVit   63 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAA-----------------ELLAAAGATVAASPAEAAAEADVVIT   63 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhh-----------------HHHHHcCCcccCCHHHHHHhCCEEEE
Confidence            4799999999999999999999999999999876521                 1222222  45678899999999999


Q ss_pred             eccCChhhhcccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEec
Q 017490          256 CLSLNKQTAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV  311 (370)
Q Consensus       256 ~lP~t~~t~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV  311 (370)
                      |+|..++.+.++-  ...++.+|||+++||+|+.+....+.+.+.++++.+.  .+|.
T Consensus        64 mv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~--~lDA  119 (286)
T COG2084          64 MLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLE--FLDA  119 (286)
T ss_pred             ecCCHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCc--EEec
Confidence            9999999999774  5789999999999999999999999999999999887  6665

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=99.40  E-value=3.2e-13  Score=119.22  Aligned_cols=115  Identities=19%  Similarity=0.345  Sum_probs=88.4

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEEEe
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCC  256 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~  256 (370)
                      ++|||||+|.||+.+|++|...|++|.+|||++.+..                 .+..... ...++.+++++||+|++|
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~-----------------~~~~~g~~~~~s~~e~~~~~dvvi~~   64 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAE-----------------ALAEAGAEVADSPAEAAEQADVVILC   64 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHH-----------------HHHHTTEEEESSHHHHHHHBSEEEE-
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhh-----------------hhHHhhhhhhhhhhhHhhcccceEee
Confidence            5899999999999999999999999999999865421                 1111111 346899999999999999


Q ss_pred             ccCChhhhcccC-HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEec
Q 017490          257 LSLNKQTAGIVN-KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV  311 (370)
Q Consensus       257 lP~t~~t~~li~-~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV  311 (370)
                      +|..++++.++. .+.++.+++|.++||++...+-+...+.+.+.+..+.  .+|.
T Consensus        65 v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~--~vda  118 (163)
T PF03446_consen   65 VPDDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVR--YVDA  118 (163)
T ss_dssp             SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEE--EEEE
T ss_pred             cccchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccce--eeee
Confidence            999888888763 2378889999999999999999999999999987765  6666

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=99.33  E-value=3.8e-12  Score=127.91  Aligned_cols=155  Identities=22%  Similarity=0.285  Sum_probs=106.7

Q ss_pred             EeCcccCcc-chhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEe
Q 017490          106 QFGVGLEGV-DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILG  184 (370)
Q Consensus       106 ~~~~G~d~i-d~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiG  184 (370)
                      -+++|+..+ ......+.+++|.|++.+.+   .+.-|...+.--+....+..      .      .+..+.|++|+|+|
T Consensus       155 eTttGv~rl~~~~~~~~l~~Pv~~vn~s~~---K~~~dn~~gt~~s~~~ai~r------a------t~~~l~Gk~VlViG  219 (425)
T PRK05476        155 ETTTGVHRLYAMAKDGALKFPAINVNDSVT---KSKFDNRYGTGESLLDGIKR------A------TNVLIAGKVVVVAG  219 (425)
T ss_pred             cchHHHHHHHHHHHcCCCCCCEEecCCccc---CccccccHHHHhhhHHHHHH------h------ccCCCCCCEEEEEC
Confidence            456777665 22223456899999988743   44333222222221111110      0      12357899999999


Q ss_pred             cCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEEEeccCChhh
Q 017490          185 FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQT  263 (370)
Q Consensus       185 lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~lP~t~~t  263 (370)
                      +|.||+.+|++|+++|++|+++|+++.+...                  ....+ ...+++++++.+|+|+.+.    .+
T Consensus       220 ~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~------------------A~~~G~~v~~l~eal~~aDVVI~aT----G~  277 (425)
T PRK05476        220 YGDVGKGCAQRLRGLGARVIVTEVDPICALQ------------------AAMDGFRVMTMEEAAELGDIFVTAT----GN  277 (425)
T ss_pred             CCHHHHHHHHHHHhCCCEEEEEcCCchhhHH------------------HHhcCCEecCHHHHHhCCCEEEECC----CC
Confidence            9999999999999999999999987654210                  00111 2346889999999998874    35


Q ss_pred             hcccCHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 017490          264 AGIVNKSFLSSMKKGSLLVNIARGGL-LDYEAIAH  297 (370)
Q Consensus       264 ~~li~~~~l~~mk~gailIN~sRg~~-vd~~aL~~  297 (370)
                      .++|+.+.|..||+|++++|+|+... +|.++|.+
T Consensus       278 ~~vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~~  312 (425)
T PRK05476        278 KDVITAEHMEAMKDGAILANIGHFDNEIDVAALEE  312 (425)
T ss_pred             HHHHHHHHHhcCCCCCEEEEcCCCCCccChHHHhh
Confidence            67899999999999999999999876 77777654

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=99.28  E-value=9.9e-12  Score=119.54  Aligned_cols=109  Identities=17%  Similarity=0.247  Sum_probs=89.2

Q ss_pred             eEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCCEEEEe
Q 017490          179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCC  256 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~l~  256 (370)
                      +|||||+|.||+.+|+.+...|++|++|||++.+..                 .+ .+.+  ...+.++++++||+|++|
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~-----------------~~-~~~g~~~~~~~~~~~~~aDivi~~   62 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVAD-----------------EL-LAAGAVTAETARQVTEQADVIFTM   62 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHH-----------------HH-HHCCCcccCCHHHHHhcCCEEEEe
Confidence            489999999999999999999999999999864411                 11 1111  245788999999999999


Q ss_pred             ccCChhhhccc-C-HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          257 LSLNKQTAGIV-N-KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       257 lP~t~~t~~li-~-~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      +|..+.++.++ + ...++.+++|+++||+++..+.+.+++.+.+++..+.
T Consensus        63 vp~~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~  113 (291)
T TIGR01505        63 VPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGID  113 (291)
T ss_pred             cCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence            99888887764 3 3467889999999999999999999999999987655

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=99.25  E-value=1.5e-11  Score=118.42  Aligned_cols=110  Identities=17%  Similarity=0.277  Sum_probs=89.8

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCCEEEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVC  255 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~l  255 (370)
                      ++|||||+|.||+.+|+.+...|++|++||+++.+..                 .. .+.+  ...++++++++||+|++
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~-----------------~~-~~~g~~~~~~~~e~~~~~d~vi~   64 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVA-----------------EV-IAAGAETASTAKAVAEQCDVIIT   64 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHH-----------------HH-HHCCCeecCCHHHHHhcCCEEEE
Confidence            4799999999999999999999999999999764411                 01 1111  23578889999999999


Q ss_pred             eccCChhhhcccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          256 CLSLNKQTAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       256 ~lP~t~~t~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      |+|.+..++.++.  .+.++.+++|.++||+++..+...+++.+.+.+..+.
T Consensus        65 ~vp~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~  116 (296)
T PRK11559         65 MLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIE  116 (296)
T ss_pred             eCCCHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence            9998888887763  3467889999999999999998889999999887665

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=99.24  E-value=2.2e-11  Score=117.59  Aligned_cols=115  Identities=15%  Similarity=0.230  Sum_probs=93.4

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEEEe
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCC  256 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~  256 (370)
                      ++|||||+|.||..+|+.+...|++|.+|||++.+..                 .+..... ...+..+++++||+|++|
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~-----------------~~~~~g~~~~~s~~~~~~~aDvVi~~   64 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVD-----------------ALVDKGATPAASPAQAAAGAEFVITM   64 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHH-----------------HHHHcCCcccCCHHHHHhcCCEEEEe
Confidence            3799999999999999999999999999999865421                 1111111 345788899999999999


Q ss_pred             ccCChhhhcccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEec
Q 017490          257 LSLNKQTAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV  311 (370)
Q Consensus       257 lP~t~~t~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV  311 (370)
                      +|....++.++.  ...+..+++|.++||+|++.+...+.+.+.+.+..+.  .+|.
T Consensus        65 vp~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~--~lda  119 (296)
T PRK15461         65 LPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS--MMDV  119 (296)
T ss_pred             cCCHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEEc
Confidence            998877777664  3467789999999999999999999999999998876  5665

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.23  E-value=3.4e-11  Score=116.42  Aligned_cols=112  Identities=17%  Similarity=0.255  Sum_probs=91.7

Q ss_pred             eEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhc---CCEE
Q 017490          179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASK---ADVV  253 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~---aDiV  253 (370)
                      +|||||+|.||+.+|++|...|++|++|||++.+..                 .+ .+.+  ...+.++++++   +|+|
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~-----------------~~-~~~g~~~~~s~~~~~~~~~~advV   63 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVD-----------------VA-GKLGITARHSLEELVSKLEAPRTI   63 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHH-----------------HH-HHCCCeecCCHHHHHHhCCCCCEE
Confidence            699999999999999999999999999999754311                 11 1111  23578888876   6999


Q ss_pred             EEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEec
Q 017490          254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV  311 (370)
Q Consensus       254 ~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV  311 (370)
                      ++|+|..+.++.+++ +.+..+++|.++||+|+....+..++.+.+.+..+.  .+|.
T Consensus        64 i~~vp~~~~~~~v~~-~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vda  118 (299)
T PRK12490         64 WVMVPAGEVTESVIK-DLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVDC  118 (299)
T ss_pred             EEEecCchHHHHHHH-HHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEeC
Confidence            999998878888874 677889999999999999999999999999988765  5774

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=99.15  E-value=5.4e-11  Score=104.24  Aligned_cols=104  Identities=23%  Similarity=0.361  Sum_probs=70.8

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCE
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  252 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  252 (370)
                      ..+.||++.|+|||.+|+.+|+.|+++|++|++++..|.....+                 .-......+++++++++|+
T Consensus        19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA-----------------~~dGf~v~~~~~a~~~adi   81 (162)
T PF00670_consen   19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQA-----------------AMDGFEVMTLEEALRDADI   81 (162)
T ss_dssp             S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHH-----------------HHTT-EEE-HHHHTTT-SE
T ss_pred             eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHh-----------------hhcCcEecCHHHHHhhCCE
Confidence            56899999999999999999999999999999999876542110                 0011123579999999999


Q ss_pred             EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 017490          253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL-LDYEAIAH  297 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~-vd~~aL~~  297 (370)
                      ++.+..    ...++..+.|.+||+|+++.|++.-.. +|.+.|.+
T Consensus        82 ~vtaTG----~~~vi~~e~~~~mkdgail~n~Gh~d~Eid~~~L~~  123 (162)
T PF00670_consen   82 FVTATG----NKDVITGEHFRQMKDGAILANAGHFDVEIDVDALEA  123 (162)
T ss_dssp             EEE-SS----SSSSB-HHHHHHS-TTEEEEESSSSTTSBTHHHHHT
T ss_pred             EEECCC----CccccCHHHHHHhcCCeEEeccCcCceeEeeccccc
Confidence            988754    356789999999999999999987543 55555443

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.15  E-value=1.5e-10  Score=112.12  Aligned_cols=112  Identities=20%  Similarity=0.274  Sum_probs=91.4

Q ss_pred             eEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhc---CCEE
Q 017490          179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASK---ADVV  253 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~---aDiV  253 (370)
                      +|||||+|.||+.+|+.|...|++|.+||+++++..                 .. .+.+  ...+++++++.   +|+|
T Consensus         2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~-----------------~~-~~~g~~~~~~~~e~~~~~~~~dvv   63 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVE-----------------AL-AEEGATGADSLEELVAKLPAPRVV   63 (301)
T ss_pred             EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHH-----------------HH-HHCCCeecCCHHHHHhhcCCCCEE
Confidence            799999999999999999999999999999865421                 11 1111  23578888775   6999


Q ss_pred             EEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEec
Q 017490          254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV  311 (370)
Q Consensus       254 ~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV  311 (370)
                      ++++|..+.++.+++ ..++.+++|.++||++++.......+.+.+++..+.  .+|.
T Consensus        64 i~~v~~~~~~~~v~~-~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~~da  118 (301)
T PRK09599         64 WLMVPAGEITDATID-ELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH--FVDV  118 (301)
T ss_pred             EEEecCCcHHHHHHH-HHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE--EEeC
Confidence            999998777777773 677889999999999999999999999999998877  5675

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=99.14  E-value=8.1e-11  Score=114.75  Aligned_cols=125  Identities=25%  Similarity=0.286  Sum_probs=86.8

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCC
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKAD  251 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aD  251 (370)
                      ..|+|++|||||+|+||+++|+.|+.+|++|+++++...+..                 ......+ ...+.++++++||
T Consensus        13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~-----------------~~A~~~G~~~~s~~eaa~~AD   75 (330)
T PRK05479         13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSW-----------------KKAEADGFEVLTVAEAAKWAD   75 (330)
T ss_pred             hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhH-----------------HHHHHCCCeeCCHHHHHhcCC
Confidence            568999999999999999999999999999998877543310                 1111112 2348899999999


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCccc
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPIL  324 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~  324 (370)
                      +|++++|.+.. ..+++.+.+..|++|++| -.+-|--+  ..+.    . . -+...||+...|-.|.+.++
T Consensus        76 VVvLaVPd~~~-~~V~~~~I~~~Lk~g~iL-~~a~G~~i--~~~~----~-~-p~~~~~Vi~vaPn~Pg~~vr  138 (330)
T PRK05479         76 VIMILLPDEVQ-AEVYEEEIEPNLKEGAAL-AFAHGFNI--HFGQ----I-V-PPADVDVIMVAPKGPGHLVR  138 (330)
T ss_pred             EEEEcCCHHHH-HHHHHHHHHhcCCCCCEE-EECCCCCh--hhce----e-c-cCCCCcEEEeCCCCCchhhh
Confidence            99999997655 777777888899999988 44444211  1110    0 0 12456777777755555333

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=99.11  E-value=1.8e-10  Score=118.12  Aligned_cols=129  Identities=15%  Similarity=0.092  Sum_probs=98.6

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhc---CCEEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK---ADVVV  254 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiV~  254 (370)
                      .+||+||+|.||+.+|++|...|++|.+|||+..+...-..       ...  ...........+++++.+.   +|+|+
T Consensus         7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~-------~~~--~~Ga~~~~~a~s~~e~v~~l~~~dvIi   77 (493)
T PLN02350          7 SRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE-------RAK--KEGNLPLYGFKDPEDFVLSIQKPRSVI   77 (493)
T ss_pred             CCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHH-------hhh--hcCCcccccCCCHHHHHhcCCCCCEEE
Confidence            36999999999999999999999999999998665211000       000  0000000134678888875   99999


Q ss_pred             EeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCC
Q 017490          255 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEP  316 (370)
Q Consensus       255 l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP  316 (370)
                      +|+|..+.++.++ ...++.+++|.++||+|+...-+...+.+.+++..+.....=|...++
T Consensus        78 ~~v~~~~aV~~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~  138 (493)
T PLN02350         78 ILVKAGAPVDQTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEE  138 (493)
T ss_pred             EECCCcHHHHHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHH
Confidence            9999999999988 468889999999999999999999999999999988855444554444

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=99.05  E-value=4.4e-10  Score=112.83  Aligned_cols=104  Identities=21%  Similarity=0.354  Sum_probs=82.2

Q ss_pred             cccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcC
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKA  250 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~a  250 (370)
                      +..+.|++|+|+|+|.||+.+|+.++++|++|+++|+++.+..                  .+...+ ...++++.+..+
T Consensus       197 ~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~------------------~A~~~G~~~~~~~e~v~~a  258 (413)
T cd00401         197 DVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICAL------------------QAAMEGYEVMTMEEAVKEG  258 (413)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHH------------------HHHhcCCEEccHHHHHcCC
Confidence            4467999999999999999999999999999999998765421                  111222 223567888999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL-LDYEAIAH  297 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~-vd~~aL~~  297 (370)
                      |+|+.+..    +.++++.+.+..||+|++++|+|++.+ +|..+|..
T Consensus       259 DVVI~atG----~~~~i~~~~l~~mk~GgilvnvG~~~~eId~~~L~~  302 (413)
T cd00401         259 DIFVTTTG----NKDIITGEHFEQMKDGAIVCNIGHFDVEIDVKGLKE  302 (413)
T ss_pred             CEEEECCC----CHHHHHHHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence            99998743    456788888999999999999999876 77777664

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=99.05  E-value=6.1e-10  Score=107.46  Aligned_cols=112  Identities=15%  Similarity=0.194  Sum_probs=90.4

Q ss_pred             eEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCCEEEEe
Q 017490          179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCC  256 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~l~  256 (370)
                      +|||||+|.||..+|+.|...|++|.+||++++..                  ... ..+  ...+..++.++||+|++|
T Consensus         2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~~------------------~~~-~~g~~~~~s~~~~~~~advVi~~   62 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVAD------------------ELL-SLGAVSVETARQVTEASDIIFIM   62 (292)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHhHH------------------HHH-HcCCeecCCHHHHHhcCCEEEEe
Confidence            69999999999999999999999999999875321                  111 111  235788889999999999


Q ss_pred             ccCChhhhcccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEec
Q 017490          257 LSLNKQTAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV  311 (370)
Q Consensus       257 lP~t~~t~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV  311 (370)
                      +|..++++.++.  ...++.+++|.++|++|....-..+.+.+.+.+..+.  .+|.
T Consensus        63 v~~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~--~vda  117 (292)
T PRK15059         63 VPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGD--YLDA  117 (292)
T ss_pred             CCChHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEEe
Confidence            998888777653  2367778999999999999999999999999987665  6675

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=99.01  E-value=8.1e-10  Score=104.62  Aligned_cols=118  Identities=18%  Similarity=0.207  Sum_probs=97.3

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEE
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVV  253 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV  253 (370)
                      .+.+++|+||+|.||..++..|...|++|++|||+.++.                 +++.+... ...+..|+.+.||+|
T Consensus        33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~-----------------~~f~~~Ga~v~~sPaeVae~sDvv   95 (327)
T KOG0409|consen   33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKC-----------------KEFQEAGARVANSPAEVAEDSDVV   95 (327)
T ss_pred             cccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHH-----------------HHHHHhchhhhCCHHHHHhhcCEE
Confidence            457899999999999999999999999999999986542                 12222222 457899999999999


Q ss_pred             EEeccCChhhhcccC--HHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHhCCceEEEEec
Q 017490          254 VCCLSLNKQTAGIVN--KSFLSSMKKGSLL-VNIARGGLLDYEAIAHYLECGHLGGLGIDV  311 (370)
Q Consensus       254 ~l~lP~t~~t~~li~--~~~l~~mk~gail-IN~sRg~~vd~~aL~~aL~~g~i~ga~lDV  311 (370)
                      +.++|.....+.++.  ...|+..++|... |+.+.-...-...|.+++.....+  .+|-
T Consensus        96 itmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~--~vDA  154 (327)
T KOG0409|consen   96 ITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGR--FVDA  154 (327)
T ss_pred             EEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCe--EEec
Confidence            999999999888763  4578888898887 999999998999999999988776  5665

>PLN02256 arogenate dehydrogenase

Probab=99.00  E-value=3.6e-09  Score=102.62  Aligned_cols=107  Identities=28%  Similarity=0.359  Sum_probs=78.3

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHH-hcCC
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFA-SKAD  251 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell-~~aD  251 (370)
                      -++++|||||+|.||+.+|+.++..|++|++||++....                   .....+  ...++++++ ..+|
T Consensus        34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~~-------------------~a~~~gv~~~~~~~e~~~~~aD   94 (304)
T PLN02256         34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYSD-------------------IAAELGVSFFRDPDDFCEEHPD   94 (304)
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHHH-------------------HHHHcCCeeeCCHHHHhhCCCC
Confidence            467799999999999999999999999999999874210                   001111  235677776 4799


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC  301 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~  301 (370)
                      +|++|+|. ..+..++..-....+++++++++++.+.-+..+++.+.+..
T Consensus        95 vVilavp~-~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~  143 (304)
T PLN02256         95 VVLLCTSI-LSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE  143 (304)
T ss_pred             EEEEecCH-HHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCC
Confidence            99999995 46677665432566899999999999765555666666543

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=98.98  E-value=1.2e-09  Score=111.82  Aligned_cols=125  Identities=17%  Similarity=0.223  Sum_probs=95.1

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHh---cCCEEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS---KADVVV  254 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~aDiV~  254 (370)
                      .+|||||+|.||..+|++|...|++|.+|||+++....-..       ...  .... ......+++++++   ++|+|+
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~-------~~~--~~g~-~i~~~~s~~e~v~~l~~~d~Ii   71 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVK-------KAK--EGNT-RVKGYHTLEELVNSLKKPRKVI   71 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-------hhh--hcCC-cceecCCHHHHHhcCCCCCEEE
Confidence            37999999999999999999999999999998654210000       000  0000 0112467888886   589999


Q ss_pred             EeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCC
Q 017490          255 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW  313 (370)
Q Consensus       255 l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~  313 (370)
                      +++|....++.++ .+.+..+++|.++||++.+..-|...+.+.+.+..+.....=|..
T Consensus        72 l~v~~~~~v~~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSG  129 (470)
T PTZ00142         72 LLIKAGEAVDETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSG  129 (470)
T ss_pred             EEeCChHHHHHHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCC
Confidence            9999999999988 467888999999999999999999999999999988743333333

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=98.98  E-value=2e-09  Score=104.10  Aligned_cols=112  Identities=13%  Similarity=0.235  Sum_probs=87.5

Q ss_pred             eEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHH---HhcCCEEE
Q 017490          179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEF---ASKADVVV  254 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~el---l~~aDiV~  254 (370)
                      +|||||+|.||..+|+.|...|++|.+|||++.+..                 .+..... ...+++++   +.++|+|+
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~-----------------~l~~~g~~~~~s~~~~~~~~~~~dvIi   64 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVK-----------------AMKEDRTTGVANLRELSQRLSAPRVVW   64 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHH-----------------HHHHcCCcccCCHHHHHhhcCCCCEEE
Confidence            799999999999999999999999999999865421                 1111111 22345554   45689999


Q ss_pred             EeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEec
Q 017490          255 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV  311 (370)
Q Consensus       255 l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV  311 (370)
                      +++|.. .++.+++ +..+.+++|.++||++.+...+...+.+.+++..+.  .+|.
T Consensus        65 ~~vp~~-~~~~v~~-~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~--~vda  117 (298)
T TIGR00872        65 VMVPHG-IVDAVLE-ELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH--LLDC  117 (298)
T ss_pred             EEcCch-HHHHHHH-HHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe--EEec
Confidence            999977 7787774 677889999999999999999999999999987776  4554

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PLN02712 arogenate dehydrogenase

Probab=98.97  E-value=9.4e-10  Score=116.99  Aligned_cols=110  Identities=22%  Similarity=0.295  Sum_probs=83.0

Q ss_pred             cccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHh-
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS-  248 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~-  248 (370)
                      +.++.+++|||||+|.||+.+|+.++.+|++|++||++.... .                  ..+.+  ...++++++. 
T Consensus       364 ~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~~-~------------------a~~~Gv~~~~~~~el~~~  424 (667)
T PLN02712        364 VNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYSD-E------------------AQKLGVSYFSDADDLCEE  424 (667)
T ss_pred             cCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHHH-H------------------HHHcCCeEeCCHHHHHhc
Confidence            557889999999999999999999999999999999874210 0                  01111  2357888776 


Q ss_pred             cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 017490          249 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC  301 (370)
Q Consensus       249 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~  301 (370)
                      .+|+|++|+|. ..+..++..-....||+|++++|++.+.-...+.+.+.+..
T Consensus       425 ~aDvVILavP~-~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~  476 (667)
T PLN02712        425 HPEVILLCTSI-LSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQ  476 (667)
T ss_pred             CCCEEEECCCh-HHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccC
Confidence            58999999994 67777776554557999999999999885455555555544

>PLN02858 fructose-bisphosphate aldolase

Probab=98.97  E-value=2.6e-09  Score=121.38  Aligned_cols=116  Identities=16%  Similarity=0.169  Sum_probs=94.5

Q ss_pred             CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEEE
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVC  255 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l  255 (370)
                      .++|||||+|.||.++|++|...|++|.+||+++.+..                 .+..... ...+..+++++||+|++
T Consensus       324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~-----------------~l~~~Ga~~~~s~~e~~~~aDvVi~  386 (1378)
T PLN02858        324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLV-----------------RFENAGGLAGNSPAEVAKDVDVLVI  386 (1378)
T ss_pred             CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHH-----------------HHHHcCCeecCCHHHHHhcCCEEEE
Confidence            47899999999999999999999999999999865421                 1111111 24678899999999999


Q ss_pred             eccCChhhhccc--CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh--CCceEEEEec
Q 017490          256 CLSLNKQTAGIV--NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC--GHLGGLGIDV  311 (370)
Q Consensus       256 ~lP~t~~t~~li--~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~--g~i~ga~lDV  311 (370)
                      |+|...+++.++  +...++.+++|.++||+|...+-..+.+.+.+.+  ..+.  .+|.
T Consensus       387 ~V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~--~lDA  444 (1378)
T PLN02858        387 MVANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIK--LVDA  444 (1378)
T ss_pred             ecCChHHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcE--EEEc
Confidence            999988888887  3457888999999999999999999999999988  4444  5665

>PLN02858 fructose-bisphosphate aldolase

Probab=98.96  E-value=1.7e-09  Score=122.82  Aligned_cols=119  Identities=19%  Similarity=0.173  Sum_probs=96.9

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEE
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVV  254 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~  254 (370)
                      +.++||+||+|.||..||++|...|++|.+|||++.+..                 .+..... ...+..++.++||+|+
T Consensus         3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~-----------------~l~~~Ga~~~~s~~e~a~~advVi   65 (1378)
T PLN02858          3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLME-----------------KFCELGGHRCDSPAEAAKDAAALV   65 (1378)
T ss_pred             CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHH-----------------HHHHcCCeecCCHHHHHhcCCEEE
Confidence            457899999999999999999999999999999865421                 1111111 3468999999999999


Q ss_pred             EeccCChhhhccc--CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEec
Q 017490          255 CCLSLNKQTAGIV--NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV  311 (370)
Q Consensus       255 l~lP~t~~t~~li--~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV  311 (370)
                      +|+|..+.++.++  ....++.+++|.++||+|+..+-..+.+.+.+.+..-....+|.
T Consensus        66 ~~l~~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDa  124 (1378)
T PLN02858         66 VVLSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDA  124 (1378)
T ss_pred             EEcCChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEc
Confidence            9999999988876  34678889999999999999999999999999987622236776

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=98.94  E-value=4.3e-09  Score=106.40  Aligned_cols=150  Identities=19%  Similarity=0.247  Sum_probs=95.8

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHH-----------
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF-----------  246 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-----------  246 (370)
                      ++|+|||+|.||..+|..|+..|++|++||+++..... ..        .+.    .. . ....++++           
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~-l~--------~g~----~~-~-~e~~l~~~l~~~~~~g~l~   68 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDT-IN--------RGE----IH-I-VEPDLDMVVKTAVEGGYLR   68 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHH-HH--------CCC----CC-c-CCCCHHHHHHHHhhcCcee
Confidence            68999999999999999999999999999997654211 00        000    00 0 01123332           


Q ss_pred             ----HhcCCEEEEeccCC------hhhhcccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce-------EE
Q 017490          247 ----ASKADVVVCCLSLN------KQTAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG-------GL  307 (370)
Q Consensus       247 ----l~~aDiV~l~lP~t------~~t~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~-------ga  307 (370)
                          ++.||+|++|+|..      ++...+..  ....+.+++|+++|+.|.-.+-..+.+...+.+....       |.
T Consensus        69 ~~~~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~  148 (415)
T PRK11064         69 ATTTPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGE  148 (415)
T ss_pred             eecccccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccC
Confidence                34799999999964      22233321  3466779999999999999998899988888764221       11


Q ss_pred             EEe---cCCCCCCCCCCcc---cCCCceEEccCCCCccHHHHHHHH
Q 017490          308 GID---VAWTEPFDPNDPI---LKFKNVLITPHVGGVTEHSYRSMA  347 (370)
Q Consensus       308 ~lD---V~~~EPl~~~~pL---~~~~nvilTPHia~~t~~~~~~~~  347 (370)
                      +.|   ++.+|-+.+...+   ...|.+     +||.++++.+++.
T Consensus       149 ~~~f~v~~~PE~~~~G~~~~~~~~~~~v-----vgG~~~~~~~~~~  189 (415)
T PRK11064        149 QADINIAYCPERVLPGQVMVELIKNDRV-----IGGMTPVCSARAS  189 (415)
T ss_pred             CCCeEEEECCCccCCCChhhhhcCCCEE-----EEeCCHHHHHHHH
Confidence            223   4667766555433   333433     2455666555443

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=98.93  E-value=1.9e-09  Score=103.69  Aligned_cols=110  Identities=20%  Similarity=0.204  Sum_probs=87.0

Q ss_pred             EEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCCEEEEeccC
Q 017490          182 ILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCCLSL  259 (370)
Q Consensus       182 IiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~l~lP~  259 (370)
                      |||+|.||.++|+.|...|++|.+|||+..+..                 .+ .+.+  ...++.+++++||+|++|+|.
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~-----------------~l-~~~g~~~~~s~~~~~~~advVil~vp~   62 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVE-----------------EA-VAAGAQAAASPAEAAEGADRVITMLPA   62 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHH-----------------HH-HHcCCeecCCHHHHHhcCCEEEEeCCC
Confidence            689999999999999999999999999865411                 11 1111  235788999999999999998


Q ss_pred             ChhhhcccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEec
Q 017490          260 NKQTAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV  311 (370)
Q Consensus       260 t~~t~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV  311 (370)
                      ...++.++.  ...++.+++|.++||++...+-..+.+.+.+++..+.  .+|.
T Consensus        63 ~~~~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~--~vda  114 (288)
T TIGR01692        63 GQHVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAV--FMDA  114 (288)
T ss_pred             hHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEEC
Confidence            777777762  4567789999999999988877788888888876665  5664

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=98.91  E-value=3e-09  Score=108.85  Aligned_cols=113  Identities=15%  Similarity=0.235  Sum_probs=90.0

Q ss_pred             eEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccc------cCCCCCHHHHH---hc
Q 017490          179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE------KGCHEDIFEFA---SK  249 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~ell---~~  249 (370)
                      .|||||+|.||..+|++|...|++|.+|||++.+..                 .+...      .....+++++.   ++
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~-----------------~l~~~~~~g~~~~~~~s~~e~v~~l~~   63 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTD-----------------EFLAEHAKGKKIVGAYSIEEFVQSLER   63 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHH-----------------HHHhhccCCCCceecCCHHHHHhhcCC
Confidence            389999999999999999999999999999865421                 11111      11234666665   46


Q ss_pred             CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEec
Q 017490          250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV  311 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV  311 (370)
                      +|+|++++|..+.++.+++ +.+..+++|.++||++....-+...+.+.+.+..+.  .+|+
T Consensus        64 ~dvIil~v~~~~~v~~Vi~-~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~--fvda  122 (467)
T TIGR00873        64 PRKIMLMVKAGAPVDAVIN-QLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGIL--FVGS  122 (467)
T ss_pred             CCEEEEECCCcHHHHHHHH-HHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCE--EEcC
Confidence            8999999998888888874 677889999999999999999999999999988887  4554

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=98.89  E-value=8.5e-09  Score=104.45  Aligned_cols=151  Identities=10%  Similarity=0.071  Sum_probs=94.2

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEEEe
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCC  256 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~  256 (370)
                      .+|||||+|.||..+|..++. |++|++||++..+...-....  .+..+....++..... ...+..+.+++||++++|
T Consensus         7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~--~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~   83 (425)
T PRK15182          7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGV--DVNLETTEEELREARYLKFTSEIEKIKECNFYIIT   83 (425)
T ss_pred             CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcC--CCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEE
Confidence            689999999999999999877 799999999865521110000  0000000011101000 122333568999999999


Q ss_pred             ccCC------hhhhcccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC--Cce-E-EEEecCCCCCCCCCC---
Q 017490          257 LSLN------KQTAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG--HLG-G-LGIDVAWTEPFDPND---  321 (370)
Q Consensus       257 lP~t------~~t~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g--~i~-g-a~lDV~~~EPl~~~~---  321 (370)
                      +|..      ++...++.  ....+.+++|.++|+.|+-.+-..+.+++.+.+.  .+. + ...=+|.+||+.+..   
T Consensus        84 Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~  163 (425)
T PRK15182         84 VPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKH  163 (425)
T ss_pred             cCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCcccc
Confidence            9965      33455542  3467789999999999999998888765555442  222 1 111246789987665   


Q ss_pred             cccCCCceEE
Q 017490          322 PILKFKNVLI  331 (370)
Q Consensus       322 pL~~~~nvil  331 (370)
                      .+...|+++.
T Consensus       164 ~~~~~~riv~  173 (425)
T PRK15182        164 RLTNIKKITS  173 (425)
T ss_pred             cccCCCeEEE
Confidence            4455566644

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=98.88  E-value=5.3e-09  Score=102.53  Aligned_cols=164  Identities=21%  Similarity=0.256  Sum_probs=106.4

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccc----cccccC-CCCCHHHHHhcCCE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDD----LVDEKG-CHEDIFEFASKADV  252 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~l~ell~~aDi  252 (370)
                      .++||+|||.||.++|-.+...|++|+|||.+..+-.. .+....+.. +-..++    .+.... .+++--+.++.||+
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~-ln~G~~~i~-e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv   87 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDK-LNRGESYIE-EPDLDEVVKEAVESGKLRATTDPEELKECDV   87 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHH-HhCCcceee-cCcHHHHHHHHHhcCCceEecChhhcccCCE
Confidence            79999999999999999999999999999987654211 111011111 000011    111111 22222344569999


Q ss_pred             EEEeccCC------hhhhcccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC--CceEEEEec---CCCCCCCC
Q 017490          253 VVCCLSLN------KQTAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG--HLGGLGIDV---AWTEPFDP  319 (370)
Q Consensus       253 V~l~lP~t------~~t~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g--~i~ga~lDV---~~~EPl~~  319 (370)
                      +++|+|..      |+...+.+  +..-+.||+|.++|--|.-.+-.++.++..|.+.  .+. .+-|.   |.+|...|
T Consensus        88 ~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~-~~~Df~laysPERv~P  166 (436)
T COG0677          88 FIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLK-FGEDFYLAYSPERVLP  166 (436)
T ss_pred             EEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCc-ccceeeEeeCccccCC
Confidence            99999932      12222333  2355679999999999999999999999988875  333 34565   47888777


Q ss_pred             CCcccCCCceEEcc-CCCCccHHHHHHHH
Q 017490          320 NDPILKFKNVLITP-HVGGVTEHSYRSMA  347 (370)
Q Consensus       320 ~~pL~~~~nvilTP-Hia~~t~~~~~~~~  347 (370)
                      ++.+.++-|   .| =+||.|+.+.+.+.
T Consensus       167 G~~~~el~~---~~kVIgG~tp~~~e~a~  192 (436)
T COG0677         167 GNVLKELVN---NPKVIGGVTPKCAELAA  192 (436)
T ss_pred             Cchhhhhhc---CCceeecCCHHHHHHHH
Confidence            877776544   34 36788887765443

>PRK08655 prephenate dehydrogenase; Provisional

Probab=98.83  E-value=1.6e-08  Score=102.87  Aligned_cols=141  Identities=26%  Similarity=0.405  Sum_probs=94.2

Q ss_pred             ceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCCEEE
Q 017490          178 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVV  254 (370)
Q Consensus       178 ~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~  254 (370)
                      ++|+||| +|.||+.+|+.++..|++|.+++++.....                 +...+.+  ...+.++.+.+||+|+
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~-----------------~~a~~~gv~~~~~~~e~~~~aDvVI   63 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGK-----------------EVAKELGVEYANDNIDAAKDADIVI   63 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHH-----------------HHHHHcCCeeccCHHHHhccCCEEE
Confidence            3799998 899999999999999999999998753310                 0111111  2346778899999999


Q ss_pred             EeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCC-CCCcccCCCceEEcc
Q 017490          255 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFD-PNDPILKFKNVLITP  333 (370)
Q Consensus       255 l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~-~~~pL~~~~nvilTP  333 (370)
                      +|+|. ..+..++ .+....+++|+++++++.......+++.+.+..+ .     .+...-|+. +..+++.-..++++|
T Consensus        64 lavp~-~~~~~vl-~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~-~-----~~V~~HPmaGp~~~~~~g~~~il~p  135 (437)
T PRK08655         64 ISVPI-NVTEDVI-KEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEG-V-----EILPTHPMFGPRTPSLKGQVVILTP  135 (437)
T ss_pred             EecCH-HHHHHHH-HHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCC-C-----EEEEcCCCCCCCCcccCCCEEEEec
Confidence            99996 3455555 4566778999999999986555555555554432 1     122223331 234577778899999


Q ss_pred             CCCCccHHHHH
Q 017490          334 HVGGVTEHSYR  344 (370)
Q Consensus       334 Hia~~t~~~~~  344 (370)
                      +- +.+.+...
T Consensus       136 ~~-~~~~~~~~  145 (437)
T PRK08655        136 TE-KRSNPWFD  145 (437)
T ss_pred             CC-CCCHHHHH
Confidence            64 23444433

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=98.79  E-value=2.8e-08  Score=96.43  Aligned_cols=145  Identities=21%  Similarity=0.311  Sum_probs=88.5

Q ss_pred             CceEEEEecCchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHHhcC
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKA  250 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~a  250 (370)
                      .++|+|||+|.||..+|+.++..|.  +|++||++......                  ..+.+    ...++++.+++|
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~------------------a~~~g~~~~~~~~~~~~~~~a   67 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRAR------------------ARELGLGDRVTTSAAEAVKGA   67 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHH------------------HHhCCCCceecCCHHHHhcCC
Confidence            4689999999999999999998885  89999997543110                  01111    124677888999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecC---CCC---CCCCCCccc
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVA---WTE---PFDPNDPIL  324 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~---~~E---Pl~~~~pL~  324 (370)
                      |+|++|+|.. .+..++ .+....++++.++++++....-..+++.+.+.. .+.  .+..+   ..|   |-....+|+
T Consensus        68 DvViiavp~~-~~~~v~-~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~-~~~--~v~~hPm~g~e~~G~~~a~~~l~  142 (307)
T PRK07502         68 DLVILCVPVG-ASGAVA-AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPE-GVH--FIPGHPLAGTEHSGPDAGFAELF  142 (307)
T ss_pred             CEEEECCCHH-HHHHHH-HHHHhhCCCCCEEEeCccchHHHHHHHHHhCCC-CCe--EEeCCCCCCCcccchhhcCHHHH
Confidence            9999999963 333333 345567899999999976542222223222221 222  23322   111   111123566


Q ss_pred             CCCceEEccCCCCccHHHHHH
Q 017490          325 KFKNVLITPHVGGVTEHSYRS  345 (370)
Q Consensus       325 ~~~nvilTPHia~~t~~~~~~  345 (370)
                      .-.+++++|+-+ .+.++.+.
T Consensus       143 ~g~~~~l~~~~~-~~~~~~~~  162 (307)
T PRK07502        143 ENRWCILTPPEG-TDPAAVAR  162 (307)
T ss_pred             CCCeEEEeCCCC-CCHHHHHH
Confidence            667789999644 34444443

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.78  E-value=1.5e-08  Score=98.38  Aligned_cols=83  Identities=23%  Similarity=0.293  Sum_probs=67.9

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEE
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  255 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  255 (370)
                      .+++|||||+|.+|+.+|++|...|++|.+|+|+..                             .+++++++++|+|++
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-----------------------------~~~~~~~~~advvi~   53 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-----------------------------LSLAAVLADADVIVS   53 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-----------------------------CCHHHHHhcCCEEEE
Confidence            467899999999999999999999999999998632                             257788899999999


Q ss_pred             eccCChhhhcccCHHHHh-cCCCCcEEEEcCCCcc
Q 017490          256 CLSLNKQTAGIVNKSFLS-SMKKGSLLVNIARGGL  289 (370)
Q Consensus       256 ~lP~t~~t~~li~~~~l~-~mk~gailIN~sRg~~  289 (370)
                      ++|. ...+.+++. ... .+++++++|++++|-.
T Consensus        54 ~vp~-~~~~~v~~~-l~~~~~~~~~ivi~~s~gi~   86 (308)
T PRK14619         54 AVSM-KGVRPVAEQ-VQALNLPPETIIVTATKGLD   86 (308)
T ss_pred             ECCh-HHHHHHHHH-HHHhcCCCCcEEEEeCCccc
Confidence            9997 577777632 223 4789999999988543

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=98.78  E-value=3.4e-08  Score=95.27  Aligned_cols=119  Identities=18%  Similarity=0.131  Sum_probs=76.5

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccc-cc---hhhhccccccc-cc-ccc--CCCCCHHHHHhc
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SS---ALAVKNGIIDD-LV-DEK--GCHEDIFEFASK  249 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~-~~---~~~~~~~~~~~-~~-~~~--~~~~~l~ell~~  249 (370)
                      ++|||||+|.||..+|+.+...|++|++||++.......... ..   .+. ..+...+ .. ...  ....+..+.++.
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~   83 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLV-KKGKMSQEEADATLGRIRCTTNLEELRD   83 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHH-HcCCCCHHHHHHHHhceEeeCCHHHhCC
Confidence            589999999999999999999999999999876442100000 00   000 0000000 00 000  112222356899


Q ss_pred             CCEEEEeccCChhhhcccCHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHH
Q 017490          250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLV-NIARGGLLDYEAIAHYLE  300 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailI-N~sRg~~vd~~aL~~aL~  300 (370)
                      ||+|+.|+|..++.+..+-++..+.++++++|+ |+|.-.   ...+.+.+.
T Consensus        84 aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~---~~~l~~~~~  132 (295)
T PLN02545         84 ADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS---ITRLASATQ  132 (295)
T ss_pred             CCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCC---HHHHHhhcC
Confidence            999999999999888877667777799999886 777664   445556554

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=98.78  E-value=1.2e-07  Score=94.75  Aligned_cols=118  Identities=15%  Similarity=0.176  Sum_probs=79.9

Q ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCccccccc
Q 017490          139 SCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVS  217 (370)
Q Consensus       139 ~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~  217 (370)
                      ..++-.+-.++..+|+...      ...+..   .....++|+||| +|.||+.+|+.++..|+.|.+||++..      
T Consensus        69 ~~~~~i~~~i~~~s~~~q~------~~~~~~---~~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~------  133 (374)
T PRK11199         69 DLIEDVLRRVMRESYSSEN------DKGFKT---LNPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW------  133 (374)
T ss_pred             HHHHHHHHHHHHHHHHHhH------Hhcccc---cCcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc------
Confidence            3455555556666554321      122211   112458999999 999999999999999999999997421      


Q ss_pred             cccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 017490          218 CQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAH  297 (370)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~  297 (370)
                                             .+.++++++||+|++|+|... +..++. + +..+++|+++++++.....-.+++.+
T Consensus       134 -----------------------~~~~~~~~~aDlVilavP~~~-~~~~~~-~-l~~l~~~~iv~Dv~SvK~~~~~~~~~  187 (374)
T PRK11199        134 -----------------------DRAEDILADAGMVIVSVPIHL-TEEVIA-R-LPPLPEDCILVDLTSVKNAPLQAMLA  187 (374)
T ss_pred             -----------------------hhHHHHHhcCCEEEEeCcHHH-HHHHHH-H-HhCCCCCcEEEECCCccHHHHHHHHH
Confidence                                   245677889999999999654 455552 3 44489999999997754332334433

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.76  E-value=7.3e-08  Score=96.03  Aligned_cols=102  Identities=19%  Similarity=0.309  Sum_probs=73.8

Q ss_pred             cccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCCCCHHHHHhcCCE
Q 017490          174 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADV  252 (370)
Q Consensus       174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDi  252 (370)
                      .+.+++|.|+|+|.+|+.+++.++.+|++|.++|++..+.......   +       ...+. ......++.+.++++|+
T Consensus       164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~---~-------g~~v~~~~~~~~~l~~~l~~aDv  233 (370)
T TIGR00518       164 GVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAE---F-------GGRIHTRYSNAYEIEDAVKRADL  233 (370)
T ss_pred             CCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHh---c-------CceeEeccCCHHHHHHHHccCCE
Confidence            3577889999999999999999999999999999875431100000   0       00000 00112457788899999


Q ss_pred             EEEeccCC-hhhhcccCHHHHhcCCCCcEEEEcC
Q 017490          253 VVCCLSLN-KQTAGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       253 V~l~lP~t-~~t~~li~~~~l~~mk~gailIN~s  285 (370)
                      |+.+++.+ ..+..+++++.++.||+|+++||+|
T Consensus       234 VI~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva  267 (370)
T TIGR00518       234 LIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVA  267 (370)
T ss_pred             EEEccccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence            99998653 2345688999999999999999997

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK08818 prephenate dehydrogenase; Provisional

Probab=98.75  E-value=1.4e-07  Score=93.83  Aligned_cols=122  Identities=20%  Similarity=0.291  Sum_probs=83.2

Q ss_pred             cCceEEEEec-CchhHHHHHHhcc-CCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEE
Q 017490          176 LGKTVFILGF-GNIGVELAKRLRP-FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  253 (370)
Q Consensus       176 ~g~tvGIiGl-G~IG~~vA~~l~~-~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  253 (370)
                      ...+|+|||+ |.||+.+|+.++. +|.+|++||+....                           ..++++.+++||+|
T Consensus         3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~---------------------------~~~~~~~v~~aDlV   55 (370)
T PRK08818          3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPG---------------------------SLDPATLLQRADVL   55 (370)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccc---------------------------cCCHHHHhcCCCEE
Confidence            4579999999 9999999999985 59999999974211                           13567889999999


Q ss_pred             EEeccCChhhhcccCH--HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCC--CCCCcccCCCce
Q 017490          254 VCCLSLNKQTAGIVNK--SFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPF--DPNDPILKFKNV  329 (370)
Q Consensus       254 ~l~lP~t~~t~~li~~--~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl--~~~~pL~~~~nv  329 (370)
                      ++|+|.. .+..++.+  .....+|+|+++++++.-..    ..++++.....     ++-..-|+  +..+.++.--++
T Consensus        56 ilavPv~-~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~----~i~~~~~~~~~-----~fVG~HPMaG~E~s~lf~g~~~  125 (370)
T PRK08818         56 IFSAPIR-HTAALIEEYVALAGGRAAGQLWLDVTSIKQ----APVAAMLASQA-----EVVGLHPMTAPPKSPTLKGRVM  125 (370)
T ss_pred             EEeCCHH-HHHHHHHHHhhhhcCCCCCeEEEECCCCcH----HHHHHHHhcCC-----CEEeeCCCCCCCCCcccCCCeE
Confidence            9999954 44555432  11234899999999987652    22222222211     23334454  223467777788


Q ss_pred             EEccC
Q 017490          330 LITPH  334 (370)
Q Consensus       330 ilTPH  334 (370)
                      ++||.
T Consensus       126 iltp~  130 (370)
T PRK08818        126 VVCEA  130 (370)
T ss_pred             EEeCC
Confidence            99996

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=98.74  E-value=4e-08  Score=94.13  Aligned_cols=142  Identities=18%  Similarity=0.228  Sum_probs=84.7

Q ss_pred             eEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEecc
Q 017490          179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLS  258 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP  258 (370)
                      +|||||+|.||..+|+.|+..|++|++||++.........            ......  ...+. +.+++||+|++|+|
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~------------~g~~~~--~~~~~-~~~~~aDlVilavp   66 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIE------------RGLVDE--ASTDL-SLLKDCDLVILALP   66 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH------------CCCccc--ccCCH-hHhcCCCEEEEcCC
Confidence            7999999999999999999999999999987543110000            000100  11233 46789999999999


Q ss_pred             CChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecC---CCCCC---CCCCcccCCCceEEc
Q 017490          259 LNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVA---WTEPF---DPNDPILKFKNVLIT  332 (370)
Q Consensus       259 ~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~---~~EPl---~~~~pL~~~~nvilT  332 (370)
                      ... ...++ ++....+++++++++++.-..    ..++++......  .+...   ..|.-   ....-|+.-.++++|
T Consensus        67 ~~~-~~~~~-~~l~~~l~~~~ii~d~~Svk~----~~~~~~~~~~~~--~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~  138 (279)
T PRK07417         67 IGL-LLPPS-EQLIPALPPEAIVTDVGSVKA----PIVEAWEKLHPR--FVGSHPMAGTAESGVEAGQRGLFKNRPWVLT  138 (279)
T ss_pred             HHH-HHHHH-HHHHHhCCCCcEEEeCcchHH----HHHHHHHHhhCC--ceeeCCcCCCCcchHHHhhHHHhCCCcEEEc
Confidence            543 33333 456677899999999987543    233333332212  12222   11110   001125667788999


Q ss_pred             cCCCCccHHHHH
Q 017490          333 PHVGGVTEHSYR  344 (370)
Q Consensus       333 PHia~~t~~~~~  344 (370)
                      |+-.. +++..+
T Consensus       139 p~~~~-~~~~~~  149 (279)
T PRK07417        139 PTENT-DLNALA  149 (279)
T ss_pred             cCCCC-CHHHHH
Confidence            97543 344433

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=98.73  E-value=1.9e-08  Score=97.95  Aligned_cols=95  Identities=26%  Similarity=0.346  Sum_probs=67.5

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEE
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVV  253 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV  253 (370)
                      |+||+|||||+|+||+++|+.|+.+|++|+++++...+...                .. .+.+ ...+..+++++||+|
T Consensus         1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~----------------~a-~~~Gv~~~s~~ea~~~ADiV   63 (314)
T TIGR00465         1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWK----------------KA-TEDGFKVGTVEEAIPQADLI   63 (314)
T ss_pred             CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHH----------------HH-HHCCCEECCHHHHHhcCCEE
Confidence            57999999999999999999999999998876554322100                00 1112 224678889999999


Q ss_pred             EEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490          254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       254 ~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~  288 (370)
                      ++++|...+ ...+.++....|++|. +|-++-|=
T Consensus        64 vLaVpp~~~-~~~v~~ei~~~l~~g~-iVs~aaG~   96 (314)
T TIGR00465        64 MNLLPDEVQ-HEVYEAEIQPLLKEGK-TLGFSHGF   96 (314)
T ss_pred             EEeCCcHhH-HHHHHHHHHhhCCCCc-EEEEeCCc
Confidence            999995533 3344456667788886 77777664

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.72  E-value=8e-08  Score=87.75  Aligned_cols=110  Identities=25%  Similarity=0.325  Sum_probs=81.9

Q ss_pred             cccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHh-c
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFAS-K  249 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~-~  249 (370)
                      +.+++||+++|+|+|+||+.+|+.|..+|++|+++|++.....                 ......+ ...+.++++. +
T Consensus        23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~-----------------~~~~~~g~~~v~~~~l~~~~   85 (200)
T cd01075          23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVA-----------------RAAELFGATVVAPEEIYSVD   85 (200)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHH-----------------HHHHHcCCEEEcchhhcccc
Confidence            4679999999999999999999999999999999998754310                 0111111 1123345554 7


Q ss_pred             CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      ||+++.|..     .++|+++.++.|+ ..+++.-+.+.+-| ..-.+.|++..+.
T Consensus        86 ~Dv~vp~A~-----~~~I~~~~~~~l~-~~~v~~~AN~~~~~-~~~~~~L~~~Gi~  134 (200)
T cd01075          86 ADVFAPCAL-----GGVINDDTIPQLK-AKAIAGAANNQLAD-PRHGQMLHERGIL  134 (200)
T ss_pred             CCEEEeccc-----ccccCHHHHHHcC-CCEEEECCcCccCC-HhHHHHHHHCCCE
Confidence            999986644     3589999999997 45788888888866 6677888888776

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=98.72  E-value=8.8e-08  Score=96.73  Aligned_cols=161  Identities=18%  Similarity=0.251  Sum_probs=95.2

Q ss_pred             eEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccc---ccC---CCCCHHHHHhcCCE
Q 017490          179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD---EKG---CHEDIFEFASKADV  252 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~l~ell~~aDi  252 (370)
                      +|||||+|.||..+|..|...|++|++||++..+...-....  .+..+..+.+...   ..+   ...++++++++||+
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~--~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~adv   79 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGK--SPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADV   79 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCC--CCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCE
Confidence            699999999999999999999999999998765421100000  0000000000000   001   22467888999999


Q ss_pred             EEEeccCChh------hhcccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH-HhC-CceEEEEec---CCCCCCCC
Q 017490          253 VVCCLSLNKQ------TAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYL-ECG-HLGGLGIDV---AWTEPFDP  319 (370)
Q Consensus       253 V~l~lP~t~~------t~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL-~~g-~i~ga~lDV---~~~EPl~~  319 (370)
                      |++|+|....      ...+..  ....+.+++|.++|++|.-.+-..+.+.+.+ ++. .+. .+.|+   +.+|...+
T Consensus        80 vii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~-~~~d~~v~~~Pe~~~~  158 (411)
T TIGR03026        80 IIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLK-LGEDFYLAYNPEFLRE  158 (411)
T ss_pred             EEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCC-CCCCceEEECCCcCCC
Confidence            9999996532      112221  3456678999999999987777777776544 441 111 13343   35555444


Q ss_pred             CC---cccCCCceEEccCCCCccHHHHHHHH
Q 017490          320 ND---PILKFKNVLITPHVGGVTEHSYRSMA  347 (370)
Q Consensus       320 ~~---pL~~~~nvilTPHia~~t~~~~~~~~  347 (370)
                      ..   .++..+.+++.     .++++.+++.
T Consensus       159 G~~~~~~~~~~~iv~G-----~~~~~~~~~~  184 (411)
T TIGR03026       159 GNAVHDLLNPDRIVGG-----ETEEAGEAVA  184 (411)
T ss_pred             CChhhhhcCCCEEEEe-----CCHHHHHHHH
Confidence            33   34555666665     2555544433

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=98.71  E-value=1.4e-08  Score=101.95  Aligned_cols=102  Identities=25%  Similarity=0.267  Sum_probs=71.1

Q ss_pred             cccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcC
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKA  250 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~a  250 (370)
                      ...|+||+|+|||+|.+|+.-|..|+..|.+|++--|...-....    .++        +.+.+.+ ...++++++++|
T Consensus        31 ~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~----~s~--------~kA~~dGF~v~~~~Ea~~~A   98 (487)
T PRK05225         31 ASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKR----ASW--------RKATENGFKVGTYEELIPQA   98 (487)
T ss_pred             hHHhCCCEEEEEccCHHHHHHhCCCccccceeEEecccccccccc----chH--------HHHHhcCCccCCHHHHHHhC
Confidence            357999999999999999988888888888887433321000000    000        0000112 346799999999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~  288 (370)
                      |+|++.+|.+ + .+.+..+.++.||+|++|. .|.|=
T Consensus        99 DvVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~-fsHGF  133 (487)
T PRK05225         99 DLVINLTPDK-Q-HSDVVRAVQPLMKQGAALG-YSHGF  133 (487)
T ss_pred             CEEEEcCChH-H-HHHHHHHHHhhCCCCCEEE-ecCCc
Confidence            9999999988 3 6677799999999999875 34443

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.70  E-value=1e-07  Score=91.58  Aligned_cols=131  Identities=11%  Similarity=0.115  Sum_probs=81.7

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhh---hccccccc-----cccccCCCCCHHHHHhc
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALA---VKNGIIDD-----LVDEKGCHEDIFEFASK  249 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~~l~ell~~  249 (370)
                      ++|+|||+|.||..+|..+...|++|++||+++..............   ...+.+.+     .........++++.+++
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~   81 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD   81 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence            47999999999999999999999999999997654211000000000   00000000     00000013577889999


Q ss_pred             CCEEEEeccCChhhhcccCHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHhCCceEEEEecC
Q 017490          250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLL-VNIARGGLLDYEAIAHYLECGHLGGLGIDVA  312 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gail-IN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~  312 (370)
                      ||+|+.|+|...+.+..+-.+..+.+++++++ +|+|.-.+   ..+.+.++. .-+..++..|
T Consensus        82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~---~~l~~~~~~-~~r~~g~h~~  141 (288)
T PRK09260         82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSP---TEIASFTKR-PERVIAMHFF  141 (288)
T ss_pred             CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCC-cccEEEEecC
Confidence            99999999987766554444566778999876 78887554   456555532 3334566666

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=98.69  E-value=1.4e-08  Score=88.79  Aligned_cols=94  Identities=30%  Similarity=0.410  Sum_probs=64.8

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEE
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVV  253 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV  253 (370)
                      |+||+|+|||||.-|++.|..|+..|++|++-.|..++..                 +.+.+.+ ...+..|..++||+|
T Consensus         2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~-----------------~~A~~~Gf~v~~~~eAv~~aDvV   64 (165)
T PF07991_consen    2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASW-----------------EKAKADGFEVMSVAEAVKKADVV   64 (165)
T ss_dssp             HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHH-----------------HHHHHTT-ECCEHHHHHHC-SEE
T ss_pred             cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCH-----------------HHHHHCCCeeccHHHHHhhCCEE
Confidence            6799999999999999999999999999998887654210                 1122223 456899999999999


Q ss_pred             EEeccCChhhhcccCHHHHhcCCCCcEEEEcCCC
Q 017490          254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       254 ~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg  287 (370)
                      ++.+|.. .-..+..++....||+|+.|+ .+.|
T Consensus        65 ~~L~PD~-~q~~vy~~~I~p~l~~G~~L~-fahG   96 (165)
T PF07991_consen   65 MLLLPDE-VQPEVYEEEIAPNLKPGATLV-FAHG   96 (165)
T ss_dssp             EE-S-HH-HHHHHHHHHHHHHS-TT-EEE-ESSS
T ss_pred             EEeCChH-HHHHHHHHHHHhhCCCCCEEE-eCCc
Confidence            9999954 334466677888999999776 3344

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=98.67  E-value=9.1e-08  Score=95.91  Aligned_cols=144  Identities=13%  Similarity=0.084  Sum_probs=89.0

Q ss_pred             eEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccC---CCCCHHHHHhcCCEEE
Q 017490          179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKG---CHEDIFEFASKADVVV  254 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~l~ell~~aDiV~  254 (370)
                      +|+|||+|.||..+|..++ .|++|++||++..+..........+  .+..+.+... ..+   ...+..+.++.||+|+
T Consensus         2 kI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~--~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vi   78 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPI--VDKEIQQFLQSDKIHFNATLDKNEAYRDADYVI   78 (388)
T ss_pred             EEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCC--CCcCHHHHHHhCCCcEEEecchhhhhcCCCEEE
Confidence            6999999999999997776 4999999999865521111000000  0000011110 111   1123567789999999


Q ss_pred             EeccCChhh-------hcccCH-HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCc---c
Q 017490          255 CCLSLNKQT-------AGIVNK-SFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDP---I  323 (370)
Q Consensus       255 l~lP~t~~t-------~~li~~-~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~p---L  323 (370)
                      +|+|...+-       ..+... +.+..+++|.++|+.|.-++-..+.+.+.+.+..+      +|.+|.+.+.+.   +
T Consensus        79 i~Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~~~~~~~v------~~~PE~l~~G~a~~d~  152 (388)
T PRK15057         79 IATPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTENI------IFSPEFLREGKALYDN  152 (388)
T ss_pred             EeCCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHHHhhcCcE------EECcccccCCcccccc
Confidence            999965211       111111 22334799999999999999999999988876433      258888766654   3


Q ss_pred             cCCCceEE
Q 017490          324 LKFKNVLI  331 (370)
Q Consensus       324 ~~~~nvil  331 (370)
                      +..|+|++
T Consensus       153 ~~p~rvv~  160 (388)
T PRK15057        153 LHPSRIVI  160 (388)
T ss_pred             cCCCEEEE
Confidence            44444443

>PRK06545 prephenate dehydrogenase; Validated

Probab=98.64  E-value=1.8e-07  Score=92.92  Aligned_cols=146  Identities=18%  Similarity=0.255  Sum_probs=89.4

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEec
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  257 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  257 (370)
                      ++|+|||+|.||.++|+.++..|++|.+|+++..........        +  ......  ...++++++++||+|++|+
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~--------~--~~~~~~--~~~~~~~~~~~aDlVilav   68 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARAL--------G--FGVIDE--LAADLQRAAAEADLIVLAV   68 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHh--------c--CCCCcc--cccCHHHHhcCCCEEEEeC
Confidence            479999999999999999999999888888765431100000        0  000000  1246788899999999999


Q ss_pred             cCChhhhcccCHHHHh-cCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCC---------CCcccCCC
Q 017490          258 SLNKQTAGIVNKSFLS-SMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDP---------NDPILKFK  327 (370)
Q Consensus       258 P~t~~t~~li~~~~l~-~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~---------~~pL~~~~  327 (370)
                      |. ..+..++. +... .+++++++++++.-..-..+++.+.+. ....  .+..+   |++-         ...|+.-.
T Consensus        69 P~-~~~~~vl~-~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~-~~~~--~ig~H---PMaG~e~sG~~aa~~~lf~g~  140 (359)
T PRK06545         69 PV-DATAALLA-ELADLELKPGVIVTDVGSVKGAILAEAEALLG-DLIR--FVGGH---PMAGSHKSGVAAARADLFENA  140 (359)
T ss_pred             CH-HHHHHHHH-HHhhcCCCCCcEEEeCccccHHHHHHHHHhcC-CCCe--EEeeC---CcCcCchhhHHHhcHHHHCCC
Confidence            96 45666663 3333 488999999998876433333333321 1222  33332   4321         22466666


Q ss_pred             ceEEccCCCCccHHHHH
Q 017490          328 NVLITPHVGGVTEHSYR  344 (370)
Q Consensus       328 nvilTPHia~~t~~~~~  344 (370)
                      ..++||+-.. +.+..+
T Consensus       141 ~~il~~~~~~-~~~~~~  156 (359)
T PRK06545        141 PWVLTPDDHT-DPDAVA  156 (359)
T ss_pred             cEEEecCCCC-CHHHHH
Confidence            7889996432 344443

>PLN02712 arogenate dehydrogenase

Probab=98.64  E-value=3.5e-08  Score=105.09  Aligned_cols=95  Identities=27%  Similarity=0.382  Sum_probs=71.1

Q ss_pred             cccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHH-hcC
Q 017490          174 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFA-SKA  250 (370)
Q Consensus       174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell-~~a  250 (370)
                      .-+.++|||||+|.||+.+|+.++.+|++|++||++....                   ...+.+  ...++++++ .++
T Consensus        49 ~~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~-------------------~A~~~Gv~~~~d~~e~~~~~a  109 (667)
T PLN02712         49 NTTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHSL-------------------AARSLGVSFFLDPHDLCERHP  109 (667)
T ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHH-------------------HHHHcCCEEeCCHHHHhhcCC
Confidence            3445789999999999999999999999999999873221                   011111  234677755 569


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~  288 (370)
                      |+|++|+|. ..+..++..-.+..+++|++++|++.-.
T Consensus       110 DvViLavP~-~~~~~vl~~l~~~~l~~g~iVvDv~SvK  146 (667)
T PLN02712        110 DVILLCTSI-ISTENVLKSLPLQRLKRNTLFVDVLSVK  146 (667)
T ss_pred             CEEEEcCCH-HHHHHHHHhhhhhcCCCCeEEEECCCCc
Confidence            999999995 5677777654446799999999997544

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.64  E-value=9.9e-08  Score=91.87  Aligned_cols=132  Identities=21%  Similarity=0.268  Sum_probs=90.6

Q ss_pred             cccccCceEEEEecC-chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490          172 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  250 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG-~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  250 (370)
                      +.++.||+|+|||.| .||+++|.+|...|++|.+++++.                              .++.++.++|
T Consensus       154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t------------------------------~~l~e~~~~A  203 (301)
T PRK14194        154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS------------------------------TDAKALCRQA  203 (301)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC------------------------------CCHHHHHhcC
Confidence            468999999999996 999999999999999999997642                              2577889999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceE
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL  330 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi  330 (370)
                      |+|+++++..    +++....   +|+|+++||+|--.+.+         +|. ....-||-..+-       . -.--.
T Consensus       204 DIVIsavg~~----~~v~~~~---ik~GaiVIDvgin~~~~---------~g~-~kl~GDvdf~~~-------~-~~a~~  258 (301)
T PRK14194        204 DIVVAAVGRP----RLIDADW---LKPGAVVIDVGINRIDD---------DGR-SRLVGDVDFDSA-------L-PVVSA  258 (301)
T ss_pred             CEEEEecCCh----hcccHhh---ccCCcEEEEecccccCC---------CCC-cceecccchHHH-------H-hhcce
Confidence            9999999864    3455544   89999999998655321         131 013456632111       1 11245


Q ss_pred             EccCCCCccHHHHHHHHHHHHHHHHHHH
Q 017490          331 ITPHVGGVTEHSYRSMAKVVGDVALQLH  358 (370)
Q Consensus       331 lTPHia~~t~~~~~~~~~~~~~ni~~~~  358 (370)
                      +||-=||.-+-+...+.+.+++..+++.
T Consensus       259 iTPVPGGVGp~Tva~L~~N~~~a~~~~~  286 (301)
T PRK14194        259 ITPVPGGVGPMTIAFLMKNTVTAARLQA  286 (301)
T ss_pred             ecCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence            7886667655555445555555444444

>PLN02688 pyrroline-5-carboxylate reductase

Probab=98.62  E-value=2.4e-07  Score=87.74  Aligned_cols=101  Identities=19%  Similarity=0.317  Sum_probs=73.5

Q ss_pred             ceEEEEecCchhHHHHHHhccCCC----EEEEE-cCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcC
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGV----KIIAT-KRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKA  250 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~----~V~~~-dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~a  250 (370)
                      .+|||||+|.||.++++.|...|+    +|+++ ||+..+..                  ...+.+  ...+..+++++|
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~------------------~~~~~g~~~~~~~~e~~~~a   62 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRD------------------VFQSLGVKTAASNTEVVKSS   62 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHH------------------HHHHcCCEEeCChHHHHhcC
Confidence            379999999999999999998888    89999 87654310                  011112  235677888999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE  300 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~  300 (370)
                      |+|++|+| ....+.++. +....++++.++|.+.-|  +..+.+.+.+.
T Consensus        63 DvVil~v~-~~~~~~vl~-~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~  108 (266)
T PLN02688         63 DVIILAVK-PQVVKDVLT-ELRPLLSKDKLLVSVAAG--ITLADLQEWAG  108 (266)
T ss_pred             CEEEEEEC-cHHHHHHHH-HHHhhcCCCCEEEEecCC--CcHHHHHHHcC
Confidence            99999997 556666663 455667899999988655  46666766554

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.62  E-value=2.9e-07  Score=89.93  Aligned_cols=121  Identities=13%  Similarity=0.112  Sum_probs=81.6

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccc-cchhhh--cccccccc-ccccCCCCCHHHHHhcCCEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSALAV--KNGIIDDL-VDEKGCHEDIFEFASKADVV  253 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~-~~~~~~--~~~~~~~~-~~~~~~~~~l~ell~~aDiV  253 (370)
                      ++|||||.|.||..+|..+...|++|..||+++......... ...+..  ..+..... ........++++.++.||+|
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV   87 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI   87 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence            689999999999999999999999999999976532110000 000000  00000000 00111235788999999999


Q ss_pred             EEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 017490          254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE  300 (370)
Q Consensus       254 ~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~  300 (370)
                      +-++|.+.+.+.-+-++.-+.+++++ +|.++.. .+...++.+.++
T Consensus        88 iEavpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS-~l~~s~la~~~~  132 (321)
T PRK07066         88 QESAPEREALKLELHERISRAAKPDA-IIASSTS-GLLPTDFYARAT  132 (321)
T ss_pred             EECCcCCHHHHHHHHHHHHHhCCCCe-EEEECCC-ccCHHHHHHhcC
Confidence            99999999988877778888899998 5555554 356777777774

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=98.61  E-value=1.9e-08  Score=80.42  Aligned_cols=89  Identities=33%  Similarity=0.484  Sum_probs=62.4

Q ss_pred             eEEEEecCchhHHHHHHhccCC---CEEE-EEcCCCccccccccccchhhhccccccccccccC---CCCCHHHHHhcCC
Q 017490          179 TVFILGFGNIGVELAKRLRPFG---VKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFASKAD  251 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G---~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~~aD  251 (370)
                      ||||||+|+||..+++.+...|   .+|. +++|++++..                 ++..+.+   ...+..+++++||
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~ad   63 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAA-----------------ELAKEYGVQATADDNEEAAQEAD   63 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHH-----------------HHHHHCTTEEESEEHHHHHHHTS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHH-----------------HHHHhhccccccCChHHhhccCC
Confidence            6999999999999999999999   8999 5588765421                 1222222   1226889999999


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCC
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg  287 (370)
                      +|++++|.. ....++. +. ....++.++|++.-|
T Consensus        64 vvilav~p~-~~~~v~~-~i-~~~~~~~~vis~~ag   96 (96)
T PF03807_consen   64 VVILAVKPQ-QLPEVLS-EI-PHLLKGKLVISIAAG   96 (96)
T ss_dssp             EEEE-S-GG-GHHHHHH-HH-HHHHTTSEEEEESTT
T ss_pred             EEEEEECHH-HHHHHHH-HH-hhccCCCEEEEeCCC
Confidence            999999943 3333332 23 556789999988654

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK08507 prephenate dehydrogenase; Validated

Probab=98.60  E-value=3e-07  Score=87.80  Aligned_cols=97  Identities=19%  Similarity=0.283  Sum_probs=66.4

Q ss_pred             eEEEEecCchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhccccccccccccC---CCCCHHHHHhcCCEE
Q 017490          179 TVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFASKADVV  253 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~~aDiV  253 (370)
                      +|+|||+|.||+.+|+.++..|.  +|++||++......                  ..+.+   ...+.+++. +||+|
T Consensus         2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~------------------~~~~g~~~~~~~~~~~~-~aD~V   62 (275)
T PRK08507          2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKK------------------ALELGLVDEIVSFEELK-KCDVI   62 (275)
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHH------------------HHHCCCCcccCCHHHHh-cCCEE
Confidence            79999999999999999988775  79999987543110                  00111   123566655 59999


Q ss_pred             EEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 017490          254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC  301 (370)
Q Consensus       254 ~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~  301 (370)
                      ++|+|... +..++ .+..+ +++++++++++.-    ...+.+.+..
T Consensus        63 ilavp~~~-~~~~~-~~l~~-l~~~~iv~d~gs~----k~~i~~~~~~  103 (275)
T PRK08507         63 FLAIPVDA-IIEIL-PKLLD-IKENTTIIDLGST----KAKIIESVPK  103 (275)
T ss_pred             EEeCcHHH-HHHHH-HHHhc-cCCCCEEEECccc----hHHHHHHHHH
Confidence            99999643 44444 34555 8999999997552    4455666654

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.59  E-value=1.8e-07  Score=81.02  Aligned_cols=114  Identities=19%  Similarity=0.255  Sum_probs=79.1

Q ss_pred             cccCceEEEEecCchhHHHHHHhccCC-CEEEEEcCCCccccccccccchhhhccccccccccc--cCCCCCHHHHHhcC
Q 017490          174 TLLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE--KGCHEDIFEFASKA  250 (370)
Q Consensus       174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~ell~~a  250 (370)
                      .+.+++++|+|+|.||+.+++.+...| .+|.++||+..+.....             ......  .....+.+++++++
T Consensus        16 ~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~   82 (155)
T cd01065          16 ELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALA-------------ERFGELGIAIAYLDLEELLAEA   82 (155)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHH-------------HHHhhcccceeecchhhccccC
Confidence            467899999999999999999999886 78999998765421100             000000  01234677778999


Q ss_pred             CEEEEeccCChh-hhc-ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          251 DVVVCCLSLNKQ-TAG-IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       251 DiV~l~lP~t~~-t~~-li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      |+|++++|.... ... .+...   .+++|.+++|++..+...  .+.+.+++..+.
T Consensus        83 Dvvi~~~~~~~~~~~~~~~~~~---~~~~~~~v~D~~~~~~~~--~l~~~~~~~g~~  134 (155)
T cd01065          83 DLIINTTPVGMKPGDELPLPPS---LLKPGGVVYDVVYNPLET--PLLKEARALGAK  134 (155)
T ss_pred             CEEEeCcCCCCCCCCCCCCCHH---HcCCCCEEEEcCcCCCCC--HHHHHHHHCCCc
Confidence            999999997653 222 23322   368999999998875443  888888876553

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=98.59  E-value=2.9e-07  Score=88.20  Aligned_cols=139  Identities=21%  Similarity=0.316  Sum_probs=86.1

Q ss_pred             CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCC-HHHHHhcCCEEEE
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHED-IFEFASKADVVVC  255 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~ell~~aDiV~l  255 (370)
                      -++|+|+|+|.||+.+|+.++..|..|.+++++..........  .        ....++.  ..+ ..+.+..+|+|++
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~--~--------lgv~d~~--~~~~~~~~~~~aD~Viv   70 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAAL--E--------LGVIDEL--TVAGLAEAAAEADLVIV   70 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHh--h--------cCccccc--ccchhhhhcccCCEEEE
Confidence            3689999999999999999999999875555443321000000  0        0011110  122 2567788999999


Q ss_pred             eccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCC---CCCcccCCCceEEc
Q 017490          256 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFD---PNDPILKFKNVLIT  332 (370)
Q Consensus       256 ~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~---~~~pL~~~~nvilT  332 (370)
                      ++|-. .|..++. +....+|+|+++++++.-.---.+++.+.+.++.      .+...-|+-   ...+++.--.+++|
T Consensus        71 avPi~-~~~~~l~-~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~------~~vg~HPM~G~~~~~~lf~~~~~vlt  142 (279)
T COG0287          71 AVPIE-ATEEVLK-ELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV------RFVGGHPMFGPEADAGLFENAVVVLT  142 (279)
T ss_pred             eccHH-HHHHHHH-HhcccCCCCCEEEecccccHHHHHHHHHhccCCC------eeEecCCCCCCcccccccCCCEEEEc
Confidence            99953 5555553 3444799999999998866544455555443321      222333441   24467777779999


Q ss_pred             cCC
Q 017490          333 PHV  335 (370)
Q Consensus       333 PHi  335 (370)
                      |.-
T Consensus       143 p~~  145 (279)
T COG0287         143 PSE  145 (279)
T ss_pred             CCC
Confidence            953

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=98.57  E-value=1.5e-07  Score=91.27  Aligned_cols=104  Identities=24%  Similarity=0.357  Sum_probs=82.2

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCE
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  252 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  252 (370)
                      .-+.||++.|.|||-+|+-+|.++++.|++|++.+..|-+...                 ..-.......+++....+|+
T Consensus       205 ~liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~Ale-----------------A~MdGf~V~~m~~Aa~~gDi  267 (420)
T COG0499         205 VLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALE-----------------AAMDGFRVMTMEEAAKTGDI  267 (420)
T ss_pred             eeecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHH-----------------HhhcCcEEEEhHHhhhcCCE
Confidence            3589999999999999999999999999999999876544210                 11011134578899999999


Q ss_pred             EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 017490          253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL-LDYEAIAH  297 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~-vd~~aL~~  297 (370)
                      ++.+.-    .+++|..+.|..||+|+++-|.+.-.. ||.+.|.+
T Consensus       268 fiT~TG----nkdVi~~eh~~~MkDgaIl~N~GHFd~EI~~~~L~~  309 (420)
T COG0499         268 FVTATG----NKDVIRKEHFEKMKDGAILANAGHFDVEIDVAGLEE  309 (420)
T ss_pred             EEEccC----CcCccCHHHHHhccCCeEEecccccceeccHHHHHH
Confidence            998753    678999999999999999999987665 66666554

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.57  E-value=4.8e-07  Score=86.99  Aligned_cols=157  Identities=15%  Similarity=0.134  Sum_probs=91.7

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccc---cchhhhccccc-cc-----cccccCCCCCHHHHHh
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ---SSALAVKNGII-DD-----LVDEKGCHEDIFEFAS  248 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~---~~~~~~~~~~~-~~-----~~~~~~~~~~l~ell~  248 (370)
                      ++|+|||.|.||..+|..+...|++|+.||++..........   ........... .+     .........++++.++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~   83 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK   83 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence            589999999999999999998999999999876431110000   00000000000 00     0000002357888899


Q ss_pred             cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCc
Q 017490          249 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKN  328 (370)
Q Consensus       249 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~n  328 (370)
                      .||+|+.++|...+.+.-+-++..+.++++++|+..+.+  +....+.+.++.. -+..++-.        -+|.+..+.
T Consensus        84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt--~~~~~~~~~~~~~-~r~vg~Hf--------~~p~~~~~l  152 (287)
T PRK08293         84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST--LLPSQFAEATGRP-EKFLALHF--------ANEIWKNNT  152 (287)
T ss_pred             CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECccc--CCHHHHHhhcCCc-ccEEEEcC--------CCCCCcCCe
Confidence            999999999976554443334555678889988433332  3445666666432 23334322        234556788


Q ss_pred             eEEccCCCCccHHHHHHH
Q 017490          329 VLITPHVGGVTEHSYRSM  346 (370)
Q Consensus       329 vilTPHia~~t~~~~~~~  346 (370)
                      |.+.|+-. .+++..+.+
T Consensus       153 vevv~~~~-t~~~~~~~~  169 (287)
T PRK08293        153 AEIMGHPG-TDPEVFDTV  169 (287)
T ss_pred             EEEeCCCC-CCHHHHHHH
Confidence            88888644 344444433

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=98.56  E-value=1.1e-07  Score=85.75  Aligned_cols=152  Identities=20%  Similarity=0.232  Sum_probs=81.6

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccccc---C---CCCCHHHHHhcCC
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK---G---CHEDIFEFASKAD  251 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~l~ell~~aD  251 (370)
                      ++|+|+|+|.+|..+|..++..|++|++||.+......-...  ..+..+..++++..+.   +   ...+.++.+.+||
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g--~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~ad   78 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNG--ELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDAD   78 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTT--SSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-S
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhc--cccccccchhhhhccccccccchhhhhhhhhhhccc
Confidence            589999999999999999999999999999876532110000  0011111111222211   1   2357788899999


Q ss_pred             EEEEeccCChhhhcccC--------HHHHhcCCCCcEEEEcCCCcccCHHHHH-HHHHhCCceEEEEe-cCCCCCCCCCC
Q 017490          252 VVVCCLSLNKQTAGIVN--------KSFLSSMKKGSLLVNIARGGLLDYEAIA-HYLECGHLGGLGID-VAWTEPFDPND  321 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~--------~~~l~~mk~gailIN~sRg~~vd~~aL~-~aL~~g~i~ga~lD-V~~~EPl~~~~  321 (370)
                      ++++|+|......+-.|        ....+.++++.++|.-|.-.+-..+.++ ..|++....+.-++ +|.+|-+.+.+
T Consensus        79 v~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G~  158 (185)
T PF03721_consen   79 VVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREGR  158 (185)
T ss_dssp             EEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TTS
T ss_pred             eEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCCC
Confidence            99999984332222222        2455668999999999999998888555 44443322111111 26788777665


Q ss_pred             c---ccCCCceEE
Q 017490          322 P---ILKFKNVLI  331 (370)
Q Consensus       322 p---L~~~~nvil  331 (370)
                      .   +...|+|++
T Consensus       159 a~~d~~~~~rvV~  171 (185)
T PF03721_consen  159 AIEDFRNPPRVVG  171 (185)
T ss_dssp             HHHHHHSSSEEEE
T ss_pred             cchhccCCCEEEE
Confidence            4   455677665

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.52  E-value=5.7e-07  Score=86.59  Aligned_cols=131  Identities=16%  Similarity=0.157  Sum_probs=78.6

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccc-cchh-h-hccccccc-----cccccCCCCCHHHHHhc
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSAL-A-VKNGIIDD-----LVDEKGCHEDIFEFASK  249 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~-~~~~-~-~~~~~~~~-----~~~~~~~~~~l~ell~~  249 (370)
                      ++|+|||+|.||..+|..+...|++|++||++.......... ...+ . +..+....     .........+++ .+++
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~   83 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD   83 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence            579999999999999999999999999999976532110000 0000 0 00000000     000001124554 4789


Q ss_pred             CCEEEEeccCChhhhcccCHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHhCCceEEEEecCC
Q 017490          250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLV-NIARGGLLDYEAIAHYLECGHLGGLGIDVAW  313 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailI-N~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~  313 (370)
                      ||+|+.++|...+.+..+-++..+.++++++|+ |+|.-.   ...+.+.+.. .-+..++-.+.
T Consensus        84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~s~la~~~~~-~~r~~g~h~~~  144 (292)
T PRK07530         84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSIS---ITRLASATDR-PERFIGIHFMN  144 (292)
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC---HHHHHhhcCC-cccEEEeeccC
Confidence            999999999876655444356667789999998 666544   3466666542 12223555555

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.52  E-value=3.6e-07  Score=81.21  Aligned_cols=89  Identities=24%  Similarity=0.371  Sum_probs=73.5

Q ss_pred             ccccCceEEEEecCch-hHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCC
Q 017490          173 ETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  251 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~I-G~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  251 (370)
                      ..+.|+++.|||.|.+ |..+|+.|...|++|.+.+|+.                              .++.+.+.++|
T Consensus        40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~------------------------------~~l~~~l~~aD   89 (168)
T cd01080          40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT------------------------------KNLKEHTKQAD   89 (168)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc------------------------------hhHHHHHhhCC
Confidence            4689999999999986 8989999999999999988752                              25678899999


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      +|+.+++..   + +++++.   ++++.++||+|...-+|       ..+|++.
T Consensus        90 iVIsat~~~---~-ii~~~~---~~~~~viIDla~prdvd-------~~~~~~~  129 (168)
T cd01080          90 IVIVAVGKP---G-LVKGDM---VKPGAVVIDVGINRVPD-------KSGGKLV  129 (168)
T ss_pred             EEEEcCCCC---c-eecHHH---ccCCeEEEEccCCCccc-------ccCCCee
Confidence            999998743   2 688775   57899999999998887       4555554

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.51  E-value=3.6e-07  Score=87.47  Aligned_cols=124  Identities=23%  Similarity=0.306  Sum_probs=87.6

Q ss_pred             cccccCceEEEEecCch-hHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490          172 GETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  250 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~I-G~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  250 (370)
                      +.++.||++.|||.|.+ |+++|..|...|++|+++...                              ..++.+.+++|
T Consensus       153 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~------------------------------t~~l~~~~~~A  202 (285)
T PRK14189        153 GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK------------------------------TRDLAAHTRQA  202 (285)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC------------------------------CCCHHHHhhhC
Confidence            46799999999999999 999999999999999987532                              13688899999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceE
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL  330 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi  330 (370)
                      |+|++++|    +.++++.+   .+|+|+++||+|.-.+.          +|++   .-||-..+-        ..---.
T Consensus       203 DIVV~avG----~~~~i~~~---~ik~gavVIDVGin~~~----------~gkl---~GDVd~~~v--------~~~a~~  254 (285)
T PRK14189        203 DIVVAAVG----KRNVLTAD---MVKPGATVIDVGMNRDD----------AGKL---CGDVDFAGV--------KEVAGY  254 (285)
T ss_pred             CEEEEcCC----CcCccCHH---HcCCCCEEEEccccccC----------CCCe---eCCccHHHH--------HhhceE
Confidence            99999998    45688874   47999999999976542          2443   446632111        111246


Q ss_pred             EccCCCCccHHHHHHHHHHHHHH
Q 017490          331 ITPHVGGVTEHSYRSMAKVVGDV  353 (370)
Q Consensus       331 lTPHia~~t~~~~~~~~~~~~~n  353 (370)
                      +||-=||.-+-+...+.+.+++.
T Consensus       255 iTPVPGGVGp~T~a~Ll~N~~~a  277 (285)
T PRK14189        255 ITPVPGGVGPMTITMLLVNTIEA  277 (285)
T ss_pred             ecCCCCCchHHHHHHHHHHHHHH
Confidence            78876666544444444444433

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.50  E-value=3.6e-07  Score=84.24  Aligned_cols=116  Identities=17%  Similarity=0.247  Sum_probs=93.2

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHH---HhcCCEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEF---ASKADVV  253 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~el---l~~aDiV  253 (370)
                      +++|.||+|+||..++++++..|.+|++||+++....                 ++..... ...+++++   |...-+|
T Consensus         1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~-----------------~~~~~ga~~a~sl~el~~~L~~pr~v   63 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVE-----------------ELKDEGATGAASLDELVAKLSAPRIV   63 (300)
T ss_pred             CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHH-----------------HHHhcCCccccCHHHHHHhcCCCcEE
Confidence            4689999999999999999999999999999875421                 1111111 34566665   4567899


Q ss_pred             EEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCC
Q 017490          254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW  313 (370)
Q Consensus       254 ~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~  313 (370)
                      .+++|...-|..+|+ +.-..|.+|-++|+-+...--|.....+.|.+..|.  .+||=.
T Consensus        64 WlMvPag~it~~vi~-~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~--flD~GT  120 (300)
T COG1023          64 WLMVPAGDITDAVID-DLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIH--FLDVGT  120 (300)
T ss_pred             EEEccCCCchHHHHH-HHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCe--EEeccC
Confidence            999998877777764 566779999999999999999999999999999997  788854

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.48  E-value=2.6e-07  Score=88.34  Aligned_cols=102  Identities=19%  Similarity=0.345  Sum_probs=75.0

Q ss_pred             ceEEEEecCchhHHHHHHhccCCC----EEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCC
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGV----KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKAD  251 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~----~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aD  251 (370)
                      ++|||||+|+||.++++.+...|+    +|+++||+..+..                 .+..+.+  ...+..+++.+||
T Consensus         3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~-----------------~l~~~~g~~~~~~~~e~~~~aD   65 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLK-----------------NASDKYGITITTNNNEVANSAD   65 (272)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHH-----------------HHHHhcCcEEeCCcHHHHhhCC
Confidence            479999999999999999987674    6999998754411                 1111112  2346778889999


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE  300 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~  300 (370)
                      +|++|+|. .....++. +.-..++++.++|.+.-|  ++.+.|.+.|.
T Consensus        66 iIiLavkP-~~~~~vl~-~l~~~~~~~~lvISi~AG--i~i~~l~~~l~  110 (272)
T PRK12491         66 ILILSIKP-DLYSSVIN-QIKDQIKNDVIVVTIAAG--KSIKSTENEFD  110 (272)
T ss_pred             EEEEEeCh-HHHHHHHH-HHHHhhcCCcEEEEeCCC--CcHHHHHHhcC
Confidence            99999994 66666663 444557889999999888  67777777764

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.47  E-value=4.8e-07  Score=86.63  Aligned_cols=106  Identities=18%  Similarity=0.269  Sum_probs=73.6

Q ss_pred             cCceEEEEecCchhHHHHHHhccCC----CEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhc
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFG----VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASK  249 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G----~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~  249 (370)
                      .+++|||||+|+||.++++.+...|    .+|+++||+..+...                .+...++  ...+..+++.+
T Consensus         2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~----------------~l~~~~g~~~~~~~~e~~~~   65 (279)
T PRK07679          2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQ----------------ELHQKYGVKGTHNKKELLTD   65 (279)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHH----------------HHHHhcCceEeCCHHHHHhc
Confidence            3568999999999999999998877    689999986532100                1111111  23467788899


Q ss_pred             CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 017490          250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC  301 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~  301 (370)
                      ||+|++++|.. ....++ .+....++++.++|++.-|  +..+.+.+.+..
T Consensus        66 aDvVilav~p~-~~~~vl-~~l~~~~~~~~liIs~~aG--i~~~~l~~~~~~  113 (279)
T PRK07679         66 ANILFLAMKPK-DVAEAL-IPFKEYIHNNQLIISLLAG--VSTHSIRNLLQK  113 (279)
T ss_pred             CCEEEEEeCHH-HHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCC
Confidence            99999999943 444444 3444557889999998655  456666666543

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=98.46  E-value=3e-07  Score=87.87  Aligned_cols=108  Identities=21%  Similarity=0.220  Sum_probs=77.7

Q ss_pred             cCceEEEEecCchhHHHHHHhcc--CCCEEE-EEcCCCccccccccccchhhhccccccccccccC---CCCCHHHHHhc
Q 017490          176 LGKTVFILGFGNIGVELAKRLRP--FGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFASK  249 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~--~G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~~  249 (370)
                      ...+|||||+|.||+.+++.+..  .++++. ++|+++.+..                 +....++   .+.++++++.+
T Consensus         5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~-----------------~~a~~~g~~~~~~~~eell~~   67 (271)
T PRK13302          5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHA-----------------DFIWGLRRPPPVVPLDQLATH   67 (271)
T ss_pred             CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHH-----------------HHHHhcCCCcccCCHHHHhcC
Confidence            45789999999999999999875  588876 6787654311                 1111211   34689999999


Q ss_pred             CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      +|+|++|+|...- ..+    ..+.++.|.-++..++|.+.+.++|.++.+++...
T Consensus        68 ~D~Vvi~tp~~~h-~e~----~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~  118 (271)
T PRK13302         68 ADIVVEAAPASVL-RAI----VEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQ  118 (271)
T ss_pred             CCEEEECCCcHHH-HHH----HHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence            9999999995421 111    23335667777888999888899999999987654

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.46  E-value=1.5e-06  Score=83.21  Aligned_cols=120  Identities=16%  Similarity=0.155  Sum_probs=74.0

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccc-c---chhhhccccccc-----cccccCCCCCHHHHHh
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-S---SALAVKNGIIDD-----LVDEKGCHEDIFEFAS  248 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~-~---~~~~~~~~~~~~-----~~~~~~~~~~l~ell~  248 (370)
                      ++|+|||+|.||..+|..+...|++|+++|+++......... .   ..+. ..+....     .........+.+ .++
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~-~~g~~~~~~~~~~~~~l~~~~~~~-~~~   81 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLV-KKGKMTEADKEAALARITGTTDLD-DLK   81 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHH-HcCCCCHHHHHHHHhCeEEeCCHH-Hhc
Confidence            479999999999999999999999999999876542100000 0   0000 0000000     000000123454 478


Q ss_pred             cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 017490          249 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC  301 (370)
Q Consensus       249 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~  301 (370)
                      +||+|+.++|...+.+.-+-++..+.++++++++....|  +....|.+.+..
T Consensus        82 ~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~  132 (282)
T PRK05808         82 DADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKR  132 (282)
T ss_pred             cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCC
Confidence            999999999977766543444566678999988443333  566688887743

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.46  E-value=4.7e-07  Score=88.59  Aligned_cols=117  Identities=22%  Similarity=0.176  Sum_probs=75.8

Q ss_pred             CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEe
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  256 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  256 (370)
                      ..+|+|||+|.||..+|.+|...|++|.+|+|+......-........+..+  ...........++++.++.+|+|+++
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g--~~~~~~~~~~~~~~e~~~~aD~Vi~~   81 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPG--VALPAELYPTADPEEALAGADFAVVA   81 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCC--CcCCCCeEEeCCHHHHHcCCCEEEEE
Confidence            3579999999999999999999999999999975431100000000000000  00000011235788888999999999


Q ss_pred             ccCChhhhcccCHHHHhcCCCCcEEEEcCCC-cccC--HHHHHHHHHh
Q 017490          257 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARG-GLLD--YEAIAHYLEC  301 (370)
Q Consensus       257 lP~t~~t~~li~~~~l~~mk~gailIN~sRg-~~vd--~~aL~~aL~~  301 (370)
                      +|.. .+     ++.++.++++.++|+++.| ..-+  .+.+.+.+.+
T Consensus        82 v~~~-~~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~  123 (328)
T PRK14618         82 VPSK-AL-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF  123 (328)
T ss_pred             CchH-HH-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence            9965 33     4566789999999999997 4332  4566666655

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.45  E-value=6.4e-07  Score=86.32  Aligned_cols=131  Identities=21%  Similarity=0.286  Sum_probs=86.9

Q ss_pred             cccccCceEEEEe-cCchhHHHHHHhccCCCEEEEEc-CCCccccccccccchhhhccccccccccccCCCCCHHHHHhc
Q 017490          172 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATK-RSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK  249 (370)
Q Consensus       172 ~~~l~g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~d-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  249 (370)
                      +.++.||+|+||| .|.+|+++|.+|...|+.|.+++ ++                               .++++++++
T Consensus       153 ~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT-------------------------------~~l~e~~~~  201 (296)
T PRK14188        153 HGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRT-------------------------------RDLPAVCRR  201 (296)
T ss_pred             CCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCC-------------------------------CCHHHHHhc
Confidence            3579999999999 99999999999999999999995 32                               146788899


Q ss_pred             CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCce
Q 017490          250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNV  329 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nv  329 (370)
                      ||+|+++++...    ++.+..   +|+|+++||+|--.+-+.+.     .+|.- ...-||-..+        ...---
T Consensus       202 ADIVIsavg~~~----~v~~~~---lk~GavVIDvGin~~~~~~~-----~~g~~-~l~GDvd~~~--------v~~~a~  260 (296)
T PRK14188        202 ADILVAAVGRPE----MVKGDW---IKPGATVIDVGINRIPAPEK-----GEGKT-RLVGDVAFAE--------AAEVAG  260 (296)
T ss_pred             CCEEEEecCChh----hcchhe---ecCCCEEEEcCCcccCCccc-----cCCCc-eeeCCCCHHH--------HHhhcc
Confidence            999999999654    455433   89999999998655322000     11311 1344653211        111124


Q ss_pred             EEccCCCCccHHHHHHHHHHHHHHH
Q 017490          330 LITPHVGGVTEHSYRSMAKVVGDVA  354 (370)
Q Consensus       330 ilTPHia~~t~~~~~~~~~~~~~ni  354 (370)
                      .+||-=||.-+-+..-+.+.+++..
T Consensus       261 ~iTPVPGGVGp~T~a~L~~N~~~a~  285 (296)
T PRK14188        261 AITPVPGGVGPMTIACLLANTLTAA  285 (296)
T ss_pred             EecCCCCChhHHHHHHHHHHHHHHH
Confidence            6799877765544444444444433

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=98.43  E-value=1.6e-06  Score=89.73  Aligned_cols=131  Identities=14%  Similarity=0.079  Sum_probs=79.5

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccc----cchhhhccccccccccc--cCCCCCHHHHHhcCC
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ----SSALAVKNGIIDDLVDE--KGCHEDIFEFASKAD  251 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~l~ell~~aD  251 (370)
                      ++|||||+|.||..+|..+...|++|.+||+++.........    ...+....+.  .....  .....++++.+++||
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~g~i~~~~~~~ea~~~aD   82 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDA--PLPPEGRLTFCASLAEAVAGAD   82 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccc--hhhhhhceEeeCCHHHHhcCCC
Confidence            479999999999999999999999999999976542110000    0000000000  00000  112357888999999


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCC
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWT  314 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~  314 (370)
                      +|+.++|...+.+..+-++.-+.++++++ |.++..++ ....+.+.+....  ...++-+-+
T Consensus        83 ~Vieavpe~~~vk~~l~~~l~~~~~~~~i-I~SsTsgi-~~s~l~~~~~~~~--r~~~~hP~n  141 (495)
T PRK07531         83 WIQESVPERLDLKRRVLAEIDAAARPDAL-IGSSTSGF-LPSDLQEGMTHPE--RLFVAHPYN  141 (495)
T ss_pred             EEEEcCcCCHHHHHHHHHHHHhhCCCCcE-EEEcCCCC-CHHHHHhhcCCcc--eEEEEecCC
Confidence            99999998876665433344455777765 55555443 4567777664432  234554433

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=98.42  E-value=1.2e-06  Score=94.68  Aligned_cols=139  Identities=20%  Similarity=0.226  Sum_probs=89.6

Q ss_pred             ceEEEEecCchhHHHHHHhccCC--CEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  255 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G--~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  255 (370)
                      ++|||||+|.||.++++.++..|  .+|++||++..+.....             ..... .....++++.++++|+|++
T Consensus         4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~-------------~~g~~-~~~~~~~~~~~~~aDvVil   69 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAV-------------SLGVI-DRGEEDLAEAVSGADVIVL   69 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHH-------------HCCCC-CcccCCHHHHhcCCCEEEE
Confidence            68999999999999999999888  48999998764411000             00000 0023467788999999999


Q ss_pred             eccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCC---------CCCCcccCC
Q 017490          256 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPF---------DPNDPILKF  326 (370)
Q Consensus       256 ~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl---------~~~~pL~~~  326 (370)
                      |+|.. .+..++. +..+.++++.++++++.....-.+.+.+.+....+     .+..+-|.         ..+..|+.-
T Consensus        70 avp~~-~~~~vl~-~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~-----r~~~~hPm~G~~~~g~~~a~~~l~~~  142 (735)
T PRK14806         70 AVPVL-AMEKVLA-DLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPA-----GFVPGHPIAGSEKSGVHAANADLFRN  142 (735)
T ss_pred             CCCHH-HHHHHHH-HHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCC-----eEEecCCcCcCCcchhhhhhhHHhCC
Confidence            99954 4444442 34456788999999987553334555555543222     22233332         123357777


Q ss_pred             CceEEccCCCC
Q 017490          327 KNVLITPHVGG  337 (370)
Q Consensus       327 ~nvilTPHia~  337 (370)
                      .+++++|+-..
T Consensus       143 ~~~~~~~~~~~  153 (735)
T PRK14806        143 HKVILTPLAET  153 (735)
T ss_pred             CeEEEECCCCC
Confidence            88999997543

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.41  E-value=1.9e-06  Score=83.02  Aligned_cols=133  Identities=17%  Similarity=0.146  Sum_probs=79.5

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccc----hhh--hcccccc-----ccccccCCCCCHHHH
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSS----ALA--VKNGIID-----DLVDEKGCHEDIFEF  246 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~----~~~--~~~~~~~-----~~~~~~~~~~~l~el  246 (370)
                      ++|+|||+|.||..+|..+...|++|++||+++...........    .+.  ...+...     +.........++ +.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~   82 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES   82 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence            58999999999999999999999999999987654211000000    000  0000000     000000112344 56


Q ss_pred             HhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCC
Q 017490          247 ASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWT  314 (370)
Q Consensus       247 l~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~  314 (370)
                      +++||+|+.++|...+.+.-+-++.-+.++++++|+....|  +....+.+.+.. +-+..++..|.+
T Consensus        83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~-~~r~ig~hf~~P  147 (291)
T PRK06035         83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG--IMIAEIATALER-KDRFIGMHWFNP  147 (291)
T ss_pred             hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCC-cccEEEEecCCC
Confidence            78999999999977654443333444567899998877666  466777777753 223345555443

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.41  E-value=5e-06  Score=85.65  Aligned_cols=199  Identities=14%  Similarity=0.133  Sum_probs=107.9

Q ss_pred             CcceEEEEeCCCCCHHHHhcC-CCCeEEEEeCcccCccchhhHhcCCeEEeccC---CCCC-CC---chhHHHHHHHHHH
Q 017490           78 ANYHLCVVKTMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVARIP---GDVT-GN---AASCAELTIYLML  149 (370)
Q Consensus        78 ~~~d~~i~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~p---g~~~-~n---a~~vAE~~l~~~L  149 (370)
                      .++|+++....| +.+-++.+ ++--+|....-..+.=-++.+.++||.+.-.-   .... +.   =.++|+.+=+...
T Consensus        63 ~~adiIlkV~~P-~~~e~~~l~~g~tli~~l~p~~n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iAGy~Av  141 (511)
T TIGR00561        63 WQSDIILKVNAP-SDAEIAELPAGKALVSFIWPAQNPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIAGYRAI  141 (511)
T ss_pred             hcCCEEEEeCCC-CHHHHHhcCCCCEEEEEcCccCCHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHHHHHHH
Confidence            357887754444 44556665 45555665555445445667888888876421   1000 00   0123333322111


Q ss_pred             H-HHHhHHHHHHHHHhcccCCCCcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchh-hhcc
Q 017490          150 G-LLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSAL-AVKN  227 (370)
Q Consensus       150 ~-~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~-~~~~  227 (370)
                      - .++.+..   .+ .|.-. ..+ ...+.++.|+|+|.+|...++.++.+|++|.++|++.............+ .+..
T Consensus       142 i~Aa~~lgr---~~-~g~~t-aag-~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~  215 (511)
T TIGR00561       142 IEAAHEFGR---FF-TGQIT-AAG-KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDF  215 (511)
T ss_pred             HHHHHHhhh---hc-CCcee-cCC-CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccc
Confidence            1 1111111   01 11111 112 45578999999999999999999999999999998765421110000000 0000


Q ss_pred             ccccccccccC--CC----------CCHHHHHhcCCEEEEec--cCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          228 GIIDDLVDEKG--CH----------EDIFEFASKADVVVCCL--SLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       228 ~~~~~~~~~~~--~~----------~~l~ell~~aDiV~l~l--P~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                        ..+.....+  ..          .-+.+.++++|+|+.++  |..+ ...++.++.++.||+|+++||+|-
T Consensus       216 --~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~-aP~Lit~emv~~MKpGsvIVDlA~  285 (511)
T TIGR00561       216 --KEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKP-APKLITEEMVDSMKAGSVIVDLAA  285 (511)
T ss_pred             --cccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCC-CCeeehHHHHhhCCCCCEEEEeee
Confidence              000000000  00          01445567899998886  3221 235889999999999999999975

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.41  E-value=1.3e-07  Score=80.96  Aligned_cols=105  Identities=23%  Similarity=0.287  Sum_probs=71.2

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCCE-EEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCC
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  251 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~-V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  251 (370)
                      ..++|+++.|||.|.+|+.+++.|...|++ |.+++|+..+...-..   .+   .    ...-....++++.+.+.++|
T Consensus         8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~---~~---~----~~~~~~~~~~~~~~~~~~~D   77 (135)
T PF01488_consen    8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAE---EF---G----GVNIEAIPLEDLEEALQEAD   77 (135)
T ss_dssp             STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHH---HH---T----GCSEEEEEGGGHCHHHHTES
T ss_pred             CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHH---Hc---C----ccccceeeHHHHHHHHhhCC
Confidence            368999999999999999999999999996 9999998654211000   00   0    00000113456778899999


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCc-EEEEcCCCccc
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGS-LLVNIARGGLL  290 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~ga-ilIN~sRg~~v  290 (370)
                      +|+.+.|....   ++.++.++..++.. ++++.|...-|
T Consensus        78 ivI~aT~~~~~---~i~~~~~~~~~~~~~~v~Dla~Pr~i  114 (135)
T PF01488_consen   78 IVINATPSGMP---IITEEMLKKASKKLRLVIDLAVPRDI  114 (135)
T ss_dssp             EEEE-SSTTST---SSTHHHHTTTCHHCSEEEES-SS-SB
T ss_pred             eEEEecCCCCc---ccCHHHHHHHHhhhhceeccccCCCC
Confidence            99999875433   78888887766543 88888765433

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.39  E-value=1.3e-06  Score=84.20  Aligned_cols=133  Identities=12%  Similarity=0.104  Sum_probs=81.0

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccc-cchhh--hcccccc-----ccccccCCCCCHHHHHhc
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSALA--VKNGIID-----DLVDEKGCHEDIFEFASK  249 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~-~~~~~--~~~~~~~-----~~~~~~~~~~~l~ell~~  249 (370)
                      ++|||||.|.||..+|..+...|++|+.||+++......... ...+.  ...+...     ..........++ +.++.
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~   84 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD   84 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence            389999999999999999999999999999987652110000 00000  0000000     000000023456 55899


Q ss_pred             CCEEEEeccCChhhhcccCHHHHhcC-CCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCC
Q 017490          250 ADVVVCCLSLNKQTAGIVNKSFLSSM-KKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWT  314 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~li~~~~l~~m-k~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~  314 (370)
                      ||+|+-++|.+.+.+.-+-+..-+.+ +++++|+..+.+-.  ..++..+++. +-+..++..|.+
T Consensus        85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~--~~~la~~~~~-~~r~~g~hf~~P  147 (286)
T PRK07819         85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIP--IMKLAAATKR-PGRVLGLHFFNP  147 (286)
T ss_pred             CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCC--HHHHHhhcCC-CccEEEEecCCC
Confidence            99999999999888776554444444 88999988766644  4444454432 222346666653

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.36  E-value=2.9e-06  Score=82.37  Aligned_cols=120  Identities=16%  Similarity=0.170  Sum_probs=69.7

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccc-cchhhhc-ccccc-ccccccCCCCCHHHHHhcCCEEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSALAVK-NGIID-DLVDEKGCHEDIFEFASKADVVV  254 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~-~~~~~~~-~~~~~-~~~~~~~~~~~l~ell~~aDiV~  254 (370)
                      ++|||||+|.||..+|..+...|++|++||++.......... ...+... .+... ..........++++.+++||+|+
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi   84 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI   84 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence            579999999999999999999999999999875431110000 0000000 00000 00000012246778889999999


Q ss_pred             EeccCChh-hhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 017490          255 CCLSLNKQ-TAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE  300 (370)
Q Consensus       255 l~lP~t~~-t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~  300 (370)
                      +++|...+ ...++ ++.-..++++++++....|  +....+.+.+.
T Consensus        85 ~av~~~~~~~~~v~-~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~  128 (311)
T PRK06130         85 EAVPEKLELKRDVF-ARLDGLCDPDTIFATNTSG--LPITAIAQAVT  128 (311)
T ss_pred             EeccCcHHHHHHHH-HHHHHhCCCCcEEEECCCC--CCHHHHHhhcC
Confidence            99997654 33343 2333345677766433333  34567777764

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.36  E-value=1.7e-06  Score=82.79  Aligned_cols=127  Identities=25%  Similarity=0.346  Sum_probs=87.3

Q ss_pred             cccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490          172 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  250 (370)
Q Consensus       172 ~~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  250 (370)
                      +.++.||+++|||. |.+|+++|.+|...|+.|.++...                              ..++.+..++|
T Consensus       153 ~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~------------------------------t~~l~~~~~~A  202 (284)
T PRK14179        153 NVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR------------------------------TRNLAEVARKA  202 (284)
T ss_pred             CCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC------------------------------CCCHHHHHhhC
Confidence            46799999999999 999999999999999999998321                              12678889999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceE
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL  330 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi  330 (370)
                      |+|+++++..    +++....   +|+|+++||+|--...          +|++   .-||-..+-       .. ---.
T Consensus       203 DIVI~avg~~----~~v~~~~---ik~GavVIDvgin~~~----------~gkl---~GDVdf~~v-------~~-~a~~  254 (284)
T PRK14179        203 DILVVAIGRG----HFVTKEF---VKEGAVVIDVGMNRDE----------NGKL---IGDVDFDEV-------AE-VASY  254 (284)
T ss_pred             CEEEEecCcc----ccCCHHH---ccCCcEEEEecceecC----------CCCe---ecCccHHHH-------Hh-hccE
Confidence            9999999854    3466544   8999999999855432          2444   345532211       11 1135


Q ss_pred             EccCCCCccHHHHHHHHHHHHHHHHH
Q 017490          331 ITPHVGGVTEHSYRSMAKVVGDVALQ  356 (370)
Q Consensus       331 lTPHia~~t~~~~~~~~~~~~~ni~~  356 (370)
                      +||-=||.-+-+..-+.+.+++..++
T Consensus       255 iTPVPGGVGp~T~a~L~~N~~~a~~~  280 (284)
T PRK14179        255 ITPVPGGVGPMTITMLMEQTYQAALR  280 (284)
T ss_pred             ecCCCCCchHHHHHHHHHHHHHHHHH
Confidence            78876666554444444444444333

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.34  E-value=3.6e-06  Score=81.77  Aligned_cols=156  Identities=14%  Similarity=0.090  Sum_probs=84.7

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcccccccc-ccchhhh--cccccc-----ccccccCCCCCHHHHHhc
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSC-QSSALAV--KNGIID-----DLVDEKGCHEDIFEFASK  249 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~-~~~~~~~--~~~~~~-----~~~~~~~~~~~l~ell~~  249 (370)
                      ++|+|||+|.||..+|..+...|++|++||+++........ ....+..  ..+...     ..........++.+.+++
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~   82 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD   82 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence            47999999999999999999999999999998643111000 0000000  000000     000000123578888999


Q ss_pred             CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCce
Q 017490          250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNV  329 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nv  329 (370)
                      ||+|+.++|...+....+-.+ ++.+.++..+|.++.. ......+.+.+.... . ...|-+-+ |      -+-.|=+
T Consensus        83 ad~Vi~avpe~~~~k~~~~~~-l~~~~~~~~ii~ssts-~~~~~~la~~~~~~~-~-~~~~hp~~-p------~~~~~lv  151 (308)
T PRK06129         83 ADYVQESAPENLELKRALFAE-LDALAPPHAILASSTS-ALLASAFTEHLAGRE-R-CLVAHPIN-P------PYLIPVV  151 (308)
T ss_pred             CCEEEECCcCCHHHHHHHHHH-HHHhCCCcceEEEeCC-CCCHHHHHHhcCCcc-c-EEEEecCC-C------cccCceE
Confidence            999999999765444332222 3444444444443333 345667777775432 2 34444332 2      1112336


Q ss_pred             EEccCCCCccHHHHHH
Q 017490          330 LITPHVGGVTEHSYRS  345 (370)
Q Consensus       330 ilTPHia~~t~~~~~~  345 (370)
                      .++|+-++ +++..++
T Consensus       152 eiv~~~~t-~~~~~~~  166 (308)
T PRK06129        152 EVVPAPWT-APATLAR  166 (308)
T ss_pred             EEeCCCCC-CHHHHHH
Confidence            68887443 3444443

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=98.32  E-value=7.5e-07  Score=86.52  Aligned_cols=108  Identities=18%  Similarity=0.226  Sum_probs=69.3

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEec
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  257 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  257 (370)
                      ++|+|||+|.||..+|..|...|++|.+|+|++..............+..+.  ..........+.++.++.||+|++|+
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~D~vi~~v   79 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGI--KLPDNLRATTDLAEALADADLILVAV   79 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCC--cCCCCeEEeCCHHHHHhCCCEEEEeC
Confidence            3799999999999999999999999999998754311000000000000000  00000002357778889999999999


Q ss_pred             cCChhhhcccCHHHHhcCCCCcEEEEcCCCcc
Q 017490          258 SLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL  289 (370)
Q Consensus       258 P~t~~t~~li~~~~l~~mk~gailIN~sRg~~  289 (370)
                      |. ..++.++. +..+.+++++++|+++.|-.
T Consensus        80 ~~-~~~~~v~~-~l~~~~~~~~~vi~~~ngv~  109 (325)
T PRK00094         80 PS-QALREVLK-QLKPLLPPDAPIVWATKGIE  109 (325)
T ss_pred             CH-HHHHHHHH-HHHhhcCCCCEEEEEeeccc
Confidence            96 46666653 45566789999999986543

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=98.31  E-value=1.4e-06  Score=89.09  Aligned_cols=109  Identities=14%  Similarity=0.206  Sum_probs=87.1

Q ss_pred             hhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccc------cCCCCCHHHHHhc---CCEEEEecc
Q 017490          188 IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE------KGCHEDIFEFASK---ADVVVCCLS  258 (370)
Q Consensus       188 IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~ell~~---aDiV~l~lP  258 (370)
                      ||+.+|++|...|++|.+|||++.+..                 ++...      .....+++++.+.   +|+|++++|
T Consensus         1 MG~~mA~nL~~~G~~V~v~nrt~~~~~-----------------~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~   63 (459)
T PRK09287          1 MGKNLALNIASHGYTVAVYNRTPEKTD-----------------EFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVK   63 (459)
T ss_pred             CcHHHHHHHHhCCCeEEEECCCHHHHH-----------------HHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECC
Confidence            799999999999999999999876521                 11111      1134688888774   899999999


Q ss_pred             CChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCC
Q 017490          259 LNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWT  314 (370)
Q Consensus       259 ~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~  314 (370)
                      ..+.++.+++ +.++.|.+|.++||++....-|...+.+.+++..+.....=|...
T Consensus        64 ~g~~v~~Vi~-~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG  118 (459)
T PRK09287         64 AGAPVDAVIE-QLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGG  118 (459)
T ss_pred             CchHHHHHHH-HHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCC
Confidence            9999999884 688999999999999999999999999999998887443333433

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.29  E-value=2.5e-06  Score=81.85  Aligned_cols=80  Identities=21%  Similarity=0.412  Sum_probs=67.6

Q ss_pred             cccccCceEEEEecCc-hhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490          172 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  250 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~-IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  250 (370)
                      +.+++||++.|||.|. +|+.+|..|...|++|+.++++.                              .++.+.+++|
T Consensus       153 ~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t------------------------------~~l~~~~~~A  202 (286)
T PRK14175        153 DIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS------------------------------KDMASYLKDA  202 (286)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc------------------------------hhHHHHHhhC
Confidence            3579999999999998 99999999999999999987531                              2577889999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~  288 (370)
                      |+|+.+++.    .+++.++.   +|+|+++||+|-..
T Consensus       203 DIVIsAvg~----p~~i~~~~---vk~gavVIDvGi~~  233 (286)
T PRK14175        203 DVIVSAVGK----PGLVTKDV---VKEGAVIIDVGNTP  233 (286)
T ss_pred             CEEEECCCC----CcccCHHH---cCCCcEEEEcCCCc
Confidence            999999984    34687764   68999999998754

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=98.27  E-value=9.1e-06  Score=78.57  Aligned_cols=97  Identities=16%  Similarity=0.145  Sum_probs=71.1

Q ss_pred             hhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCCEEEEeccCChhhhc
Q 017490          188 IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCCLSLNKQTAG  265 (370)
Q Consensus       188 IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~l~lP~t~~t~~  265 (370)
                      -|+.+|++|...|++|++||++........             .+.+...+  ...+..+++++||+|++|+|..+.++.
T Consensus        31 gGspMArnLlkAGheV~V~Drnrsa~e~e~-------------~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~e   97 (341)
T TIGR01724        31 GGSRMAIEFAMAGHDVVLAEPNREFMSDDL-------------WKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFS   97 (341)
T ss_pred             CHHHHHHHHHHCCCEEEEEeCChhhhhhhh-------------hHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHH
Confidence            388999999999999999998754210000             00111122  345788999999999999998888888


Q ss_pred             ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 017490          266 IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC  301 (370)
Q Consensus       266 li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~  301 (370)
                      ++ ...++.+++|+++||+|..+   .+.++..|+.
T Consensus        98 Vl-~GLaa~L~~GaIVID~STIs---P~t~~~~~e~  129 (341)
T TIGR01724        98 IA-RTIIEHVPENAVICNTCTVS---PVVLYYSLEK  129 (341)
T ss_pred             HH-HHHHhcCCCCCEEEECCCCC---HHHHHHHHHH
Confidence            87 46889999999999997754   5555555555

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]

Probab=98.26  E-value=1.6e-06  Score=82.44  Aligned_cols=95  Identities=21%  Similarity=0.310  Sum_probs=75.8

Q ss_pred             cccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEE
Q 017490          174 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  253 (370)
Q Consensus       174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  253 (370)
                      -+.||.+.|.|||.+|+..|+.|++||++|++....+-...                 +..-+......++|+.++.||+
T Consensus       211 M~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~AL-----------------QAaMeG~~V~tm~ea~~e~dif  273 (434)
T KOG1370|consen  211 MIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICAL-----------------QAAMEGYEVTTLEEAIREVDIF  273 (434)
T ss_pred             eecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHH-----------------HHHhhccEeeeHHHhhhcCCEE
Confidence            36899999999999999999999999999999876654311                 0111111446899999999999


Q ss_pred             EEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcc
Q 017490          254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL  289 (370)
Q Consensus       254 ~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~  289 (370)
                      +.+.    ..+.+|..+.|.+||.++++-|++.-.+
T Consensus       274 VTtT----Gc~dii~~~H~~~mk~d~IvCN~Ghfd~  305 (434)
T KOG1370|consen  274 VTTT----GCKDIITGEHFDQMKNDAIVCNIGHFDT  305 (434)
T ss_pred             EEcc----CCcchhhHHHHHhCcCCcEEeccccccc
Confidence            8764    3567899999999999999999987654

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=98.25  E-value=4.8e-06  Score=86.38  Aligned_cols=134  Identities=18%  Similarity=0.199  Sum_probs=84.5

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccc-cchhh--hccccc-----cccccccCCCCCHHHHHhc
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSALA--VKNGII-----DDLVDEKGCHEDIFEFASK  249 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~-~~~~~--~~~~~~-----~~~~~~~~~~~~l~ell~~  249 (370)
                      ++|||||+|.||..+|..+...|++|+.||+++......... ...+.  ...+..     ...........++++ +..
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~   86 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD   86 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence            579999999999999999999999999999987642110000 00000  000000     000000112246655 569


Q ss_pred             CCEEEEeccCChhhhcccCHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCC
Q 017490          250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLL-VNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEP  316 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gail-IN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP  316 (370)
                      ||+|+-++|...+.+..+-.+.-+.++++++| +|+|.-.+   .++.+++.. .=+..++..|.+-|
T Consensus        87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i---~~la~~~~~-p~r~~G~hff~Pa~  150 (507)
T PRK08268         87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSI---TAIAAALKH-PERVAGLHFFNPVP  150 (507)
T ss_pred             CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCC-cccEEEEeecCCcc
Confidence            99999999999888876655555557899999 59988776   356665543 22235777777444

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=98.24  E-value=1.1e-06  Score=81.00  Aligned_cols=131  Identities=12%  Similarity=0.127  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEecCchhHHHHHH--hccCCCEEEE-EcCCCcccccc
Q 017490          140 CAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKR--LRPFGVKIIA-TKRSWASHSQV  216 (370)
Q Consensus       140 vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~--l~~~G~~V~~-~dr~~~~~~~~  216 (370)
                      .++|.+..++...|++..         |      . ..++++|+|+|.+|+.+++.  ....|+++.+ +|+++......
T Consensus        63 ~~gy~v~~l~~~~~~~l~---------~------~-~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~  126 (213)
T PRK05472         63 GVGYNVEELLEFIEKILG---------L------D-RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTK  126 (213)
T ss_pred             CCCeeHHHHHHHHHHHhC---------C------C-CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCE
Confidence            345778888888887752         1      1 34589999999999999986  3467898775 66654331000


Q ss_pred             ccccchhhhccccccccccccCCCCCHHHHHhc--CCEEEEeccCChh---hhcccCHHHHhcCCCCcEEEEcCCCcccC
Q 017490          217 SCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK--ADVVVCCLSLNKQ---TAGIVNKSFLSSMKKGSLLVNIARGGLLD  291 (370)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~l~lP~t~~---t~~li~~~~l~~mk~gailIN~sRg~~vd  291 (370)
                                    ..... .....++++++++  .|+|++++|....   ...+.......-+....+.+|+.+|-+|+
T Consensus       127 --------------i~g~~-v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v~  191 (213)
T PRK05472        127 --------------IGGIP-VYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDVIVR  191 (213)
T ss_pred             --------------eCCeE-EcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCCEEE
Confidence                          00000 1123567788765  9999999997654   23333344445567778999999999999


Q ss_pred             HHHHHHHHHh
Q 017490          292 YEAIAHYLEC  301 (370)
Q Consensus       292 ~~aL~~aL~~  301 (370)
                      .++|..+|..
T Consensus       192 ~~~l~~~l~~  201 (213)
T PRK05472        192 NVDLTVELQT  201 (213)
T ss_pred             EechHHHHHH
Confidence            9999999874

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=98.23  E-value=4.2e-06  Score=86.64  Aligned_cols=136  Identities=15%  Similarity=0.156  Sum_probs=85.4

Q ss_pred             CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccc-cchh--hhccccc-----cccccccCCCCCHHHHHh
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSAL--AVKNGII-----DDLVDEKGCHEDIFEFAS  248 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~-~~~~--~~~~~~~-----~~~~~~~~~~~~l~ell~  248 (370)
                      =++|||||+|.||..+|..+...|++|..||+++......... ...+  ....+..     ...........++++ +.
T Consensus         5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~   83 (503)
T TIGR02279         5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LA   83 (503)
T ss_pred             ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hC
Confidence            3579999999999999999999999999999986542110000 0000  0000000     000000112346654 57


Q ss_pred             cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCC
Q 017490          249 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLV-NIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPF  317 (370)
Q Consensus       249 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailI-N~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl  317 (370)
                      +||+|+.++|...+.+..+-.+.-+.++++++|. |+|.-.+   ..+.+.+.. ..+..++..|.+-|.
T Consensus        84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~~-p~r~~G~HFf~Papv  149 (503)
T TIGR02279        84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLAR-PERVAGLHFFNPAPV  149 (503)
T ss_pred             CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcCc-ccceEEEeccCcccc
Confidence            9999999999988877765555556678888776 7766554   456666643 344567887775553

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=98.21  E-value=8.1e-06  Score=83.86  Aligned_cols=151  Identities=16%  Similarity=0.181  Sum_probs=94.3

Q ss_pred             ceEEEEecCchhHHHHHHhccC--CCEEEEEcCCCccccccccccchhhhcccccccccccc----C-CCCCHHHHHhcC
Q 017490          178 KTVFILGFGNIGVELAKRLRPF--GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK----G-CHEDIFEFASKA  250 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~--G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~l~ell~~a  250 (370)
                      ++|+|||+|.+|..+|..++..  |++|++||.+..+...-...  ..+..+....++..+.    . ...+.++.+++|
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g--~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~a   79 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSD--QLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEA   79 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcC--CCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcC
Confidence            5799999999999999999865  68999999876542110000  0001111112221110    1 224567789999


Q ss_pred             CEEEEeccCChh-----------hhcccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEe-cCCCCC
Q 017490          251 DVVVCCLSLNKQ-----------TAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGID-VAWTEP  316 (370)
Q Consensus       251 DiV~l~lP~t~~-----------t~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lD-V~~~EP  316 (370)
                      |++++|+|....           ...+..  +..-+.+++|.++|.-|.-.+-..+.+...|.+.. .|.-+. +|.+|-
T Consensus        80 dvi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g~~f~v~~~PEr  158 (473)
T PLN02353         80 DIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KGINFQILSNPEF  158 (473)
T ss_pred             CEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CCCCeEEEECCCc
Confidence            999999973321           112221  23455689999999999999988889998888731 111111 267888


Q ss_pred             CCCCCccc---CCCceEE
Q 017490          317 FDPNDPIL---KFKNVLI  331 (370)
Q Consensus       317 l~~~~pL~---~~~nvil  331 (370)
                      +.+.+.+.   ..|+|++
T Consensus       159 l~~G~a~~d~~~p~riVi  176 (473)
T PLN02353        159 LAEGTAIEDLFKPDRVLI  176 (473)
T ss_pred             cCCCCcccccCCCCEEEE
Confidence            87776544   4555553

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=98.21  E-value=9.1e-07  Score=74.99  Aligned_cols=91  Identities=23%  Similarity=0.311  Sum_probs=53.8

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCEEEEE-cCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCCE
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVKIIAT-KRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADV  252 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~-dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDi  252 (370)
                      ...+|||||.|++|..+++.|...|+.|.++ +|+.....                 .......  ...++++++.++|+
T Consensus         9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~-----------------~a~~~~~~~~~~~~~~~~~~aDl   71 (127)
T PF10727_consen    9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAE-----------------RAAAFIGAGAILDLEEILRDADL   71 (127)
T ss_dssp             ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHH-----------------HHHC--TT-----TTGGGCC-SE
T ss_pred             CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCccccc-----------------ccccccccccccccccccccCCE
Confidence            4568999999999999999999999999875 45432210                 1111111  34577889999999


Q ss_pred             EEEeccCChhhhcccCHHHHhc--CCCCcEEEEcC
Q 017490          253 VVCCLSLNKQTAGIVNKSFLSS--MKKGSLLVNIA  285 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~~l~~--mk~gailIN~s  285 (370)
                      +++++|.. ....+. ++.-..  .++|.+++-||
T Consensus        72 v~iavpDd-aI~~va-~~La~~~~~~~g~iVvHtS  104 (127)
T PF10727_consen   72 VFIAVPDD-AIAEVA-EQLAQYGAWRPGQIVVHTS  104 (127)
T ss_dssp             EEE-S-CC-HHHHHH-HHHHCC--S-TT-EEEES-
T ss_pred             EEEEechH-HHHHHH-HHHHHhccCCCCcEEEECC
Confidence            99999975 333332 222222  58999999995

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.18  E-value=2.9e-06  Score=80.22  Aligned_cols=101  Identities=16%  Similarity=0.250  Sum_probs=71.3

Q ss_pred             eEEEEecCchhHHHHHHhccCCCE---EEEEcCCCccccccccccchhhhcccccccccccc-C--CCCCHHHHHhcCCE
Q 017490          179 TVFILGFGNIGVELAKRLRPFGVK---IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-G--CHEDIFEFASKADV  252 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G~~---V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~l~ell~~aDi  252 (370)
                      +|||||+|+||+.+++.+...|..   +.+++|+..+..                 .+.... +  ...+.+++++++|+
T Consensus         2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~-----------------~l~~~~~~~~~~~~~~~~~~~aDv   64 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAA-----------------RLAERFPKVRIAKDNQAVVDRSDV   64 (258)
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHH-----------------HHHHHcCCceEeCCHHHHHHhCCE
Confidence            699999999999999999877753   578888654310                 111111 1  23578888899999


Q ss_pred             EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 017490          253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG  302 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g  302 (370)
                      |++++| ......++..  + .+++|.++|.++  .-+..+.|.+.+..+
T Consensus        65 Vilav~-p~~~~~vl~~--l-~~~~~~~vis~~--ag~~~~~l~~~~~~~  108 (258)
T PRK06476         65 VFLAVR-PQIAEEVLRA--L-RFRPGQTVISVI--AATDRAALLEWIGHD  108 (258)
T ss_pred             EEEEeC-HHHHHHHHHH--h-ccCCCCEEEEEC--CCCCHHHHHHHhCCC
Confidence            999999 4445555432  3 257899999987  347888888887653

>PRK07680 late competence protein ComER; Validated

Probab=98.17  E-value=2.7e-06  Score=81.10  Aligned_cols=101  Identities=19%  Similarity=0.328  Sum_probs=71.6

Q ss_pred             eEEEEecCchhHHHHHHhccCCC----EEEEEcCCCccccccccccchhhhcccccccccccc-C--CCCCHHHHHhcCC
Q 017490          179 TVFILGFGNIGVELAKRLRPFGV----KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-G--CHEDIFEFASKAD  251 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G~----~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~l~ell~~aD  251 (370)
                      +|||||+|.||+.+++.|...|.    +|.+++|+..+..                 .+.... +  ...+.++++..+|
T Consensus         2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~-----------------~~~~~~~g~~~~~~~~~~~~~aD   64 (273)
T PRK07680          2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAY-----------------HIKERYPGIHVAKTIEEVISQSD   64 (273)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHH-----------------HHHHHcCCeEEECCHHHHHHhCC
Confidence            69999999999999999987773    7999999754311                 011111 1  2356778889999


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE  300 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~  300 (370)
                      +|++++| ......++ ++....++++.++|.++-|  +..+.|.+.+.
T Consensus        65 iVilav~-p~~~~~vl-~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~  109 (273)
T PRK07680         65 LIFICVK-PLDIYPLL-QKLAPHLTDEHCLVSITSP--ISVEQLETLVP  109 (273)
T ss_pred             EEEEecC-HHHHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence            9999998 33455555 3344567888999999854  46777766654

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=98.13  E-value=2.4e-06  Score=86.54  Aligned_cols=98  Identities=30%  Similarity=0.446  Sum_probs=70.3

Q ss_pred             cccCceEEEEecCchhHHHHHHhccCC-CEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHHh
Q 017490          174 TLLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFAS  248 (370)
Q Consensus       174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~  248 (370)
                      .+.|++|+|+|+|.||+.+++.|+..| .+|++++|+..+..                 ++....+    ...++.+.+.
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~-----------------~la~~~g~~~i~~~~l~~~l~  239 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAE-----------------DLAKELGGEAVKFEDLEEYLA  239 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHH-----------------HHHHHcCCeEeeHHHHHHHHh
Confidence            478999999999999999999999999 68999999865421                 1111111    2246778889


Q ss_pred             cCCEEEEeccCChhhhcccCHHHHhcCC----CCcEEEEcCCCcccC
Q 017490          249 KADVVVCCLSLNKQTAGIVNKSFLSSMK----KGSLLVNIARGGLLD  291 (370)
Q Consensus       249 ~aDiV~l~lP~t~~t~~li~~~~l~~mk----~gailIN~sRg~~vd  291 (370)
                      .+|+|+.|++   .+..+++++.++.+.    ...++||.+...=+|
T Consensus       240 ~aDvVi~aT~---s~~~ii~~e~l~~~~~~~~~~~~viDla~Prdid  283 (417)
T TIGR01035       240 EADIVISSTG---APHPIVSKEDVERALRERTRPLFIIDIAVPRDVD  283 (417)
T ss_pred             hCCEEEECCC---CCCceEcHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence            9999999965   455678888777642    235788887544333

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=98.10  E-value=1.3e-05  Score=70.60  Aligned_cols=81  Identities=23%  Similarity=0.434  Sum_probs=58.2

Q ss_pred             cccccCceEEEEecCc-hhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490          172 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  250 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~-IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  250 (370)
                      +.+++||++.|||-+. +|++++..|...|+.|...+.+.                              .++++.+++|
T Consensus        31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T------------------------------~~l~~~~~~A   80 (160)
T PF02882_consen   31 GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT------------------------------KNLQEITRRA   80 (160)
T ss_dssp             T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS------------------------------SSHHHHHTTS
T ss_pred             CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC------------------------------Ccccceeeec
Confidence            4579999999999985 99999999999999999876431                              3688899999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcc
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL  289 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~  289 (370)
                      |+|+.+++-    .++|..+.   +|+|+++||++.-..
T Consensus        81 DIVVsa~G~----~~~i~~~~---ik~gavVIDvG~~~~  112 (160)
T PF02882_consen   81 DIVVSAVGK----PNLIKADW---IKPGAVVIDVGINYV  112 (160)
T ss_dssp             SEEEE-SSS----TT-B-GGG---S-TTEEEEE--CEEE
T ss_pred             cEEeeeecc----cccccccc---ccCCcEEEecCCccc
Confidence            999999873    35677654   699999999987654

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=98.09  E-value=2.1e-05  Score=81.27  Aligned_cols=199  Identities=14%  Similarity=0.149  Sum_probs=105.9

Q ss_pred             cceEEEEeCCCCCHHHHhcCC-CCeEEEEeCcccCccchhhHhcCCeEEec---cCCCCCCC----chhHHHHHHHHHHH
Q 017490           79 NYHLCVVKTMRLDSNCISRAN-QMKLIMQFGVGLEGVDINAATRCGIKVAR---IPGDVTGN----AASCAELTIYLMLG  150 (370)
Q Consensus        79 ~~d~~i~~~~~~~~~~l~~~~-~Lk~I~~~~~G~d~id~~~~~~~gI~V~n---~pg~~~~n----a~~vAE~~l~~~L~  150 (370)
                      ++|+++.-..+ +.+-++.++ +--+|.......+.=-++.+.++||.+.-   .|..+.+.    =.++|+.+=     
T Consensus        65 ~~diilkV~~P-~~~e~~~l~~g~~li~~l~p~~~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IAG-----  138 (509)
T PRK09424         65 QSDIILKVNAP-SDDEIALLREGATLVSFIWPAQNPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIAG-----  138 (509)
T ss_pred             cCCEEEEeCCC-CHHHHHhcCCCCEEEEEeCcccCHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhhH-----
Confidence            58988754444 445566664 45566665555555456678888887764   22100000    012333222     


Q ss_pred             HHHhHHHHHHHHHhcccCCC---CcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcc
Q 017490          151 LLRKQNEMRMAIEQKKLGVP---TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKN  227 (370)
Q Consensus       151 ~~R~~~~~~~~~~~~~~~~~---~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~  227 (370)
                       .|-+....+.+  +++...   ......|.+|.|+|.|.+|...++.++.+|++|+++|+++.+..........+...+
T Consensus       139 -y~Av~~aa~~~--~~~~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~  215 (509)
T PRK09424        139 -YRAVIEAAHEF--GRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELD  215 (509)
T ss_pred             -HHHHHHHHHHh--cccCCCceeccCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEec
Confidence             11111111111  111100   011456999999999999999999999999999999998654221111000000000


Q ss_pred             ccccccccc-cC-CC-CC--------HHHHHhcCCEEEEeccCChh-hhcccCHHHHhcCCCCcEEEEcCC
Q 017490          228 GIIDDLVDE-KG-CH-ED--------IFEFASKADVVVCCLSLNKQ-TAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       228 ~~~~~~~~~-~~-~~-~~--------l~ell~~aDiV~l~lP~t~~-t~~li~~~~l~~mk~gailIN~sR  286 (370)
                      ..-.+.... +. .. .+        +.+.+..+|+|+.+...... ...++.++.++.||+|++++++|-
T Consensus       216 ~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        216 FEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             cccccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence            000000000 00 00 01        11223569999998764221 234556889999999999999974

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.06  E-value=2.7e-05  Score=74.61  Aligned_cols=128  Identities=20%  Similarity=0.309  Sum_probs=87.2

Q ss_pred             cccccCceEEEEecCc-hhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490          172 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  250 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~-IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  250 (370)
                      +.+++||++.|||.|. +|+++|..|...|+.|..++++.                              .++.+..++|
T Consensus       154 ~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T------------------------------~~l~~~~~~A  203 (285)
T PRK10792        154 GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT------------------------------KNLRHHVRNA  203 (285)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC------------------------------CCHHHHHhhC
Confidence            3579999999999999 99999999999999999986431                              3688889999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceE
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL  330 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi  330 (370)
                      |+|+.+++..    +++..+.   +|+|+++||+|--.+-          +|++.   -||-..+       .... --.
T Consensus       204 DIvi~avG~p----~~v~~~~---vk~gavVIDvGin~~~----------~gk~~---GDvd~~~-------~~~~-a~~  255 (285)
T PRK10792        204 DLLVVAVGKP----GFIPGEW---IKPGAIVIDVGINRLE----------DGKLV---GDVEFET-------AAER-ASW  255 (285)
T ss_pred             CEEEEcCCCc----ccccHHH---cCCCcEEEEccccccc----------CCCcC---CCcCHHH-------HHhh-ccC
Confidence            9999998632    3566644   6999999999854421          23332   2432110       0111 235


Q ss_pred             EccCCCCccHHHHHHHHHHHHHHHHHH
Q 017490          331 ITPHVGGVTEHSYRSMAKVVGDVALQL  357 (370)
Q Consensus       331 lTPHia~~t~~~~~~~~~~~~~ni~~~  357 (370)
                      +||==||.-+-+...+.+.++...+++
T Consensus       256 itPvPGGVGp~T~a~L~~N~~~a~~~~  282 (285)
T PRK10792        256 ITPVPGGVGPMTVATLLENTLQACEEY  282 (285)
T ss_pred             cCCCCCCChHHHHHHHHHHHHHHHHHh
Confidence            788777776655555555555444443

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=98.05  E-value=3.7e-06  Score=73.73  Aligned_cols=104  Identities=17%  Similarity=0.270  Sum_probs=64.3

Q ss_pred             eEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccc--ccccccCCCCCHHHHHhcCCEEEEe
Q 017490          179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIID--DLVDEKGCHEDIFEFASKADVVVCC  256 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~ell~~aDiV~l~  256 (370)
                      +|+|+|.|+.|.++|..+...|.+|..|.|+.+.... ..   ..+.......  .+........++++.++.+|+|+++
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~-i~---~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~Iiia   76 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEE-IN---ETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIA   76 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHH-HH---HHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHH-HH---HhCCCCCCCCCcccCcccccccCHHHHhCcccEEEec
Confidence            6899999999999999999999999999987532100 00   0000000000  0001111236899999999999999


Q ss_pred             ccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490          257 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       257 lP~t~~t~~li~~~~l~~mk~gailIN~sRg~  288 (370)
                      +|.. ..+.++ ++....++++..+|++..|=
T Consensus        77 vPs~-~~~~~~-~~l~~~l~~~~~ii~~~KG~  106 (157)
T PF01210_consen   77 VPSQ-AHREVL-EQLAPYLKKGQIIISATKGF  106 (157)
T ss_dssp             S-GG-GHHHHH-HHHTTTSHTT-EEEETS-SE
T ss_pred             ccHH-HHHHHH-HHHhhccCCCCEEEEecCCc
Confidence            9944 344443 34556678999999998763

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.05  E-value=4.4e-05  Score=65.82  Aligned_cols=80  Identities=25%  Similarity=0.303  Sum_probs=66.9

Q ss_pred             cccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490          172 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  250 (370)
Q Consensus       172 ~~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  250 (370)
                      +.+++||++.|+|- ..+|+++|..|...|++|...+++.                              .++++..++|
T Consensus        23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t------------------------------~~l~~~v~~A   72 (140)
T cd05212          23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT------------------------------IQLQSKVHDA   72 (140)
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC------------------------------cCHHHHHhhC
Confidence            56899999999997 5789999999999999999987531                              2577889999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~  288 (370)
                      |+|+.+++..    ++|+.+.   +|||+++||++...
T Consensus        73 DIVvsAtg~~----~~i~~~~---ikpGa~Vidvg~~~  103 (140)
T cd05212          73 DVVVVGSPKP----EKVPTEW---IKPGATVINCSPTK  103 (140)
T ss_pred             CEEEEecCCC----CccCHHH---cCCCCEEEEcCCCc
Confidence            9999998754    5688766   68999999998655

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=98.04  E-value=1.1e-05  Score=73.59  Aligned_cols=94  Identities=20%  Similarity=0.251  Sum_probs=63.6

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEec
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  257 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  257 (370)
                      ++++|+|.|+||..+|+++...|++|++-+++..+......             +.........+.++..+.+|+|++.+
T Consensus         2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a-------------~~l~~~i~~~~~~dA~~~aDVVvLAV   68 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAA-------------AALGPLITGGSNEDAAALADVVVLAV   68 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHH-------------HhhccccccCChHHHHhcCCEEEEec
Confidence            57999999999999999999999999988665433111100             00000113357788999999999999


Q ss_pred             cCChhhhcccCHHHHhcCCCCcEEEEcCCC
Q 017490          258 SLNKQTAGIVNKSFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       258 P~t~~t~~li~~~~l~~mk~gailIN~sRg  287 (370)
                      |... ...+ .++....+. |.++|++.-.
T Consensus        69 P~~a-~~~v-~~~l~~~~~-~KIvID~tnp   95 (211)
T COG2085          69 PFEA-IPDV-LAELRDALG-GKIVIDATNP   95 (211)
T ss_pred             cHHH-HHhH-HHHHHHHhC-CeEEEecCCC
Confidence            9642 2222 234444444 8999998764

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=98.04  E-value=5.9e-06  Score=79.04  Aligned_cols=103  Identities=23%  Similarity=0.328  Sum_probs=74.6

Q ss_pred             cccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEE
Q 017490          174 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  253 (370)
Q Consensus       174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  253 (370)
                      .....+|.|+|.|-+|..-||.+.++|.+|...|.+.++.....     +-+ .+   ..-..+.....+++.+.++|+|
T Consensus       165 GV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ld-----d~f-~~---rv~~~~st~~~iee~v~~aDlv  235 (371)
T COG0686         165 GVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLD-----DLF-GG---RVHTLYSTPSNIEEAVKKADLV  235 (371)
T ss_pred             CCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhh-----Hhh-Cc---eeEEEEcCHHHHHHHhhhccEE
Confidence            35667899999999999999999999999999998865521100     000 00   0000111446788999999999


Q ss_pred             EEeccC-ChhhhcccCHHHHhcCCCCcEEEEcC
Q 017490          254 VCCLSL-NKQTAGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       254 ~l~lP~-t~~t~~li~~~~l~~mk~gailIN~s  285 (370)
                      +..+=- -...-.++.++++++||||+++||++
T Consensus       236 IgaVLIpgakaPkLvt~e~vk~MkpGsVivDVA  268 (371)
T COG0686         236 IGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVA  268 (371)
T ss_pred             EEEEEecCCCCceehhHHHHHhcCCCcEEEEEE
Confidence            987532 23455688899999999999999996

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.04  E-value=1.6e-05  Score=76.23  Aligned_cols=127  Identities=26%  Similarity=0.325  Sum_probs=87.4

Q ss_pred             cccccCceEEEEecC-chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490          172 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  250 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG-~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  250 (370)
                      +.++.||+|.|||-| .+|+++|..|...|+.|.++....                              .++.+.+++|
T Consensus       152 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t------------------------------~~l~~~~~~A  201 (285)
T PRK14191        152 HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT------------------------------KDLSFYTQNA  201 (285)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc------------------------------HHHHHHHHhC
Confidence            457999999999999 999999999999999999875321                              2577889999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceE
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL  330 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi  330 (370)
                      |+|+.+++    ..+++..+++   |+|+++||+|-..+-          +|++   .-||-..+       ..+ ---.
T Consensus       202 DIvV~AvG----~p~~i~~~~v---k~GavVIDvGi~~~~----------~gkl---vGDvd~e~-------v~~-~a~~  253 (285)
T PRK14191        202 DIVCVGVG----KPDLIKASMV---KKGAVVVDIGINRLN----------DGRL---VGDVDFEN-------VAP-KASF  253 (285)
T ss_pred             CEEEEecC----CCCcCCHHHc---CCCcEEEEeeccccc----------CCce---eccccHHH-------Hhh-hccE
Confidence            99999986    3357887765   999999999865531          2444   33553211       111 1134


Q ss_pred             EccCCCCccHHHHHHHHHHHHHHHHH
Q 017490          331 ITPHVGGVTEHSYRSMAKVVGDVALQ  356 (370)
Q Consensus       331 lTPHia~~t~~~~~~~~~~~~~ni~~  356 (370)
                      +||--||.-+-+..-+.+.+++..++
T Consensus       254 iTPVPGGVGpvT~a~L~~N~~~a~~~  279 (285)
T PRK14191        254 ITPVPGGVGPMTIVSLLENTLIAAEK  279 (285)
T ss_pred             EecCCCCChHHHHHHHHHHHHHHHHH
Confidence            89976776554444444444444433

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.03  E-value=1.5e-05  Score=76.05  Aligned_cols=80  Identities=16%  Similarity=0.303  Sum_probs=67.9

Q ss_pred             cccccCceEEEEecC-chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490          172 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  250 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG-~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  250 (370)
                      +.+++|++|.|+|.+ .+|+++|..+..+|+.|..+.++.                              .++.+.+++|
T Consensus       147 ~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t------------------------------~~L~~~~~~A  196 (279)
T PRK14178        147 KISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT------------------------------ENLKAELRQA  196 (279)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh------------------------------hHHHHHHhhC
Confidence            457999999999999 999999999999999999876431                              2588889999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~  288 (370)
                      |+|+.+++..    +++.++++   |||+++||+|-..
T Consensus       197 DIvI~Avgk~----~lv~~~~v---k~GavVIDVgi~~  227 (279)
T PRK14178        197 DILVSAAGKA----GFITPDMV---KPGATVIDVGINQ  227 (279)
T ss_pred             CEEEECCCcc----cccCHHHc---CCCcEEEEeeccc
Confidence            9999999633    67888874   9999999998654

>PLN00203 glutamyl-tRNA reductase

Probab=98.02  E-value=6.6e-06  Score=85.31  Aligned_cols=102  Identities=22%  Similarity=0.294  Sum_probs=70.0

Q ss_pred             cccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCE
Q 017490          174 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  252 (370)
Q Consensus       174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  252 (370)
                      .+.+++|+|||.|.||+.+++.|...|+ +|++++|+..+...-...   +       ...........++.+.+.++|+
T Consensus       263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~---~-------~g~~i~~~~~~dl~~al~~aDV  332 (519)
T PLN00203        263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREE---F-------PDVEIIYKPLDEMLACAAEADV  332 (519)
T ss_pred             CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH---h-------CCCceEeecHhhHHHHHhcCCE
Confidence            3889999999999999999999999997 799999986542110000   0       0000001123467788899999


Q ss_pred             EEEeccCChhhhcccCHHHHhcCCCC-------cEEEEcCCCc
Q 017490          253 VVCCLSLNKQTAGIVNKSFLSSMKKG-------SLLVNIARGG  288 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~~l~~mk~g-------ailIN~sRg~  288 (370)
                      |+.+.|   ....++.++.++.++++       -+|||.|-..
T Consensus       333 VIsAT~---s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPR  372 (519)
T PLN00203        333 VFTSTS---SETPLFLKEHVEALPPASDTVGGKRLFVDISVPR  372 (519)
T ss_pred             EEEccC---CCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCC
Confidence            999854   45668888888877432       3677776543

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=98.02  E-value=5.4e-06  Score=73.48  Aligned_cols=113  Identities=22%  Similarity=0.351  Sum_probs=68.1

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccc-cchhhhc-cccccc-ccc-----c-cC-CCCC
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSALAVK-NGIIDD-LVD-----E-KG-CHED  242 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~-~~~~~~~-~~~~~~-~~~-----~-~~-~~~~  242 (370)
                      ..+...+|.|+|.|.+|+..++.++++|++|..+|............ ....... ++.... .++     + .. ....
T Consensus        16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (168)
T PF01262_consen   16 GGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESN   95 (168)
T ss_dssp             TEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHH
T ss_pred             CCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHH
Confidence            35667899999999999999999999999999999865431100000 0000000 000000 000     0 00 0124


Q ss_pred             HHHHHhcCCEEEEe-ccCChhhhcccCHHHHhcCCCCcEEEEcC
Q 017490          243 IFEFASKADVVVCC-LSLNKQTAGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       243 l~ell~~aDiV~l~-lP~t~~t~~li~~~~l~~mk~gailIN~s  285 (370)
                      +.+.++.+|+|+.+ +......-.++.++.++.||+|++++|+|
T Consensus        96 f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis  139 (168)
T PF01262_consen   96 FAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS  139 (168)
T ss_dssp             HHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred             HHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence            77888999999864 44455667799999999999999999996

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.01  E-value=7e-06  Score=79.98  Aligned_cols=95  Identities=29%  Similarity=0.453  Sum_probs=63.3

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCC-CEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHHhc
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASK  249 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~  249 (370)
                      +.|++|+|+|.|.||+.+++.++..| .+|+++||++.+..                 ++..+.+    ...++.+.+.+
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~-----------------~la~~~g~~~~~~~~~~~~l~~  238 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAE-----------------ELAKELGGNAVPLDELLELLNE  238 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH-----------------HHHHHcCCeEEeHHHHHHHHhc
Confidence            68999999999999999999998866 57999999865411                 1111111    22356777889


Q ss_pred             CCEEEEeccCChhhhcccCHHHHhcC-CCCcEEEEcCCCc
Q 017490          250 ADVVVCCLSLNKQTAGIVNKSFLSSM-KKGSLLVNIARGG  288 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~li~~~~l~~m-k~gailIN~sRg~  288 (370)
                      +|+|+.++|.... ..++ +..++.. +++.++||.+...
T Consensus       239 aDvVi~at~~~~~-~~~~-~~~~~~~~~~~~~viDlavPr  276 (311)
T cd05213         239 ADVVISATGAPHY-AKIV-ERAMKKRSGKPRLIVDLAVPR  276 (311)
T ss_pred             CCEEEECCCCCch-HHHH-HHHHhhCCCCCeEEEEeCCCC
Confidence            9999999985433 2222 2233322 3567787777543

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.01  E-value=2.2e-05  Score=75.53  Aligned_cols=80  Identities=19%  Similarity=0.337  Sum_probs=66.1

Q ss_pred             cccccCceEEEEecCc-hhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490          172 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  250 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~-IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  250 (370)
                      +.++.||++.|+|.|. +|+++|..|...|++|..+++..                              .++.+.++++
T Consensus       154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t------------------------------~~L~~~~~~a  203 (283)
T PRK14192        154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT------------------------------QNLPELVKQA  203 (283)
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc------------------------------hhHHHHhccC
Confidence            4679999999999998 99999999999999999987621                              2567778999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~  288 (370)
                      |+|+.+++. +   ++++.+.   +|+|++++|++-..
T Consensus       204 DIvI~AtG~-~---~~v~~~~---lk~gavViDvg~n~  234 (283)
T PRK14192        204 DIIVGAVGK-P---ELIKKDW---IKQGAVVVDAGFHP  234 (283)
T ss_pred             CEEEEccCC-C---CcCCHHH---cCCCCEEEEEEEee
Confidence            999999962 2   2677655   79999999998654

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.00  E-value=4e-05  Score=72.63  Aligned_cols=100  Identities=26%  Similarity=0.347  Sum_probs=66.5

Q ss_pred             ceEEEEecCchhHHHHHHhccCC---CEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCCE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFG---VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADV  252 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G---~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDi  252 (370)
                      ++|+|||+|.||..+++.+...|   .+|.+++|+.+...                 .....++  ...+.++++.++|+
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~-----------------~~~~~~g~~~~~~~~~~~~~adv   65 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRA-----------------ALAEEYGVRAATDNQEAAQEADV   65 (267)
T ss_pred             CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHH-----------------HHHHhcCCeecCChHHHHhcCCE
Confidence            47999999999999999998888   78999999754310                 0111111  23567788899999


Q ss_pred             EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 017490          253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE  300 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~  300 (370)
                      |++|+|.. ..+.++. .....+  +.++|.+.-|  +..+.+.+.+.
T Consensus        66 Vil~v~~~-~~~~v~~-~l~~~~--~~~vvs~~~g--i~~~~l~~~~~  107 (267)
T PRK11880         66 VVLAVKPQ-VMEEVLS-ELKGQL--DKLVVSIAAG--VTLARLERLLG  107 (267)
T ss_pred             EEEEcCHH-HHHHHHH-HHHhhc--CCEEEEecCC--CCHHHHHHhcC
Confidence            99999843 3444332 122223  4677777665  35666666654

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.00  E-value=1.6e-05  Score=76.12  Aligned_cols=103  Identities=18%  Similarity=0.262  Sum_probs=71.7

Q ss_pred             ceEEEEecCchhHHHHHHhccCC----CEEEEEcCCCccccccccccchhhhcccccccccccc-C--CCCCHHHHHhcC
Q 017490          178 KTVFILGFGNIGVELAKRLRPFG----VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-G--CHEDIFEFASKA  250 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G----~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~l~ell~~a  250 (370)
                      .+|+|||+|.||..+++.+...|    .+|.+++++......                ...... .  ...+.++++.++
T Consensus         2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~----------------~l~~~~~~~~~~~~~~e~~~~a   65 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFN----------------QLYDKYPTVELADNEAEIFTKC   65 (277)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHH----------------HHHHHcCCeEEeCCHHHHHhhC
Confidence            37999999999999999998777    689999886422100                000111 1  135677888999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE  300 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~  300 (370)
                      |+|++|+|. .....++ .+....++++..+|.+.-|  +..+.|.+.+.
T Consensus        66 DvVilavpp-~~~~~vl-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~  111 (277)
T PRK06928         66 DHSFICVPP-LAVLPLL-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITP  111 (277)
T ss_pred             CEEEEecCH-HHHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence            999999993 3344443 2333456788899998877  67778888764

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.97  E-value=2.9e-05  Score=74.46  Aligned_cols=79  Identities=19%  Similarity=0.386  Sum_probs=65.7

Q ss_pred             cccccCceEEEEecCc-hhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490          172 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  250 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~-IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  250 (370)
                      +.++.||++.|||.|. +|+++|..|...|+.|.+++...                              .++.+..++|
T Consensus       159 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T------------------------------~~l~~~~~~A  208 (287)
T PRK14176        159 GVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT------------------------------DDLKKYTLDA  208 (287)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC------------------------------CCHHHHHhhC
Confidence            4579999999999999 99999999999999999986421                              3678889999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCC
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg  287 (370)
                      |+|++++.-.    +++..+.   +|+|+++||+|--
T Consensus       209 DIvv~AvG~p----~~i~~~~---vk~gavVIDvGin  238 (287)
T PRK14176        209 DILVVATGVK----HLIKADM---VKEGAVIFDVGIT  238 (287)
T ss_pred             CEEEEccCCc----cccCHHH---cCCCcEEEEeccc
Confidence            9999987632    4677664   7899999999854

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=97.95  E-value=1.3e-05  Score=76.44  Aligned_cols=106  Identities=20%  Similarity=0.263  Sum_probs=69.8

Q ss_pred             ceEEEEecCchhHHHHHHhccC--CCE-EEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCCE
Q 017490          178 KTVFILGFGNIGVELAKRLRPF--GVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADV  252 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~--G~~-V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDi  252 (370)
                      .+|||||+|.||+.+++.+...  +++ +.++|++..+..                 .+....+  .+.++++++.++|+
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~-----------------~~a~~~~~~~~~~~~ell~~~Dv   64 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAE-----------------NLASKTGAKACLSIDELVEDVDL   64 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHH-----------------HHHHhcCCeeECCHHHHhcCCCE
Confidence            3799999999999999988764  566 456888754310                 1111111  34689998899999


Q ss_pred             EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHhCCce
Q 017490          253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDY---EAIAHYLECGHLG  305 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~---~aL~~aL~~g~i~  305 (370)
                      |++|.|.. ....+    ....++.|.-++..+.|.+.|.   +.|.++.+++...
T Consensus        65 Vvi~a~~~-~~~~~----~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~  115 (265)
T PRK13304         65 VVECASVN-AVEEV----VPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCK  115 (265)
T ss_pred             EEEcCChH-HHHHH----HHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCE
Confidence            99998742 22111    1223455666777888887763   4677777776543

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.95  E-value=8.1e-06  Score=82.84  Aligned_cols=94  Identities=30%  Similarity=0.458  Sum_probs=66.3

Q ss_pred             cccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHHh
Q 017490          174 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFAS  248 (370)
Q Consensus       174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~  248 (370)
                      .+.|++|+|+|.|.||+.+++.|...|+ +|++++|++.+..                 .+....+    ...++.+.+.
T Consensus       179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~-----------------~la~~~g~~~~~~~~~~~~l~  241 (423)
T PRK00045        179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAE-----------------ELAEEFGGEAIPLDELPEALA  241 (423)
T ss_pred             CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHH-----------------HHHHHcCCcEeeHHHHHHHhc
Confidence            4789999999999999999999999998 7999999764421                 1111111    2245667788


Q ss_pred             cCCEEEEeccCChhhhcccCHHHHhcC-----CCCcEEEEcCCC
Q 017490          249 KADVVVCCLSLNKQTAGIVNKSFLSSM-----KKGSLLVNIARG  287 (370)
Q Consensus       249 ~aDiV~l~lP~t~~t~~li~~~~l~~m-----k~gailIN~sRg  287 (370)
                      ++|+|+.++|.   ...+++.+.++.+     +.+.++||.+-.
T Consensus       242 ~aDvVI~aT~s---~~~~i~~~~l~~~~~~~~~~~~vviDla~P  282 (423)
T PRK00045        242 EADIVISSTGA---PHPIIGKGMVERALKARRHRPLLLVDLAVP  282 (423)
T ss_pred             cCCEEEECCCC---CCcEEcHHHHHHHHhhccCCCeEEEEeCCC
Confidence            99999999663   3446777776553     245677777643

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=97.95  E-value=0.00013  Score=68.01  Aligned_cols=139  Identities=21%  Similarity=0.260  Sum_probs=91.0

Q ss_pred             cccccCceEEEEecCchhHHHHHHhccCCCE---EEEEcCCC----ccccccccccchhhhcccccccccccc---CCCC
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLRPFGVK---IIATKRSW----ASHSQVSCQSSALAVKNGIIDDLVDEK---GCHE  241 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~---V~~~dr~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  241 (370)
                      +..++++++.|+|.|.+|+.+|+.|...|++   |+.+||+.    .+... ...   +.      ..+....   ....
T Consensus        20 g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~-L~~---~~------~~la~~~~~~~~~~   89 (226)
T cd05311          20 GKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDD-LNP---DK------NEIAKETNPEKTGG   89 (226)
T ss_pred             CCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchh-hhH---HH------HHHHHHhccCcccC
Confidence            3568899999999999999999999999985   99999983    22100 000   00      0011111   1113


Q ss_pred             CHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCC-ceEEEEecCCCCCCCCC
Q 017490          242 DIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGH-LGGLGIDVAWTEPFDPN  320 (370)
Q Consensus       242 ~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~-i~ga~lDV~~~EPl~~~  320 (370)
                      ++.+.++++|+|+.+.|     .++++.+.++.|+++.++...+..  ..|.-+.++.+.|. +..-|     .+.+   
T Consensus        90 ~l~~~l~~~dvlIgaT~-----~G~~~~~~l~~m~~~~ivf~lsnP--~~e~~~~~A~~~ga~i~a~G-----~~~~---  154 (226)
T cd05311          90 TLKEALKGADVFIGVSR-----PGVVKKEMIKKMAKDPIVFALANP--VPEIWPEEAKEAGADIVATG-----RSDF---  154 (226)
T ss_pred             CHHHHHhcCCEEEeCCC-----CCCCCHHHHHhhCCCCEEEEeCCC--CCcCCHHHHHHcCCcEEEeC-----CCCC---
Confidence            67788889999999876     467888999999999999998843  34444444444443 23222     1221   


Q ss_pred             CcccCCCceEEccCCCC
Q 017490          321 DPILKFKNVLITPHVGG  337 (370)
Q Consensus       321 ~pL~~~~nvilTPHia~  337 (370)
                        .....|+++-|=++-
T Consensus       155 --~~Q~nn~~~fPg~~~  169 (226)
T cd05311         155 --PNQVNNVLGFPGIFR  169 (226)
T ss_pred             --ccccceeeecchhhH
Confidence              346788999996653

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=97.92  E-value=8.1e-05  Score=67.34  Aligned_cols=96  Identities=24%  Similarity=0.320  Sum_probs=67.0

Q ss_pred             CcccccCceEEEEecC-chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCC----HHH
Q 017490          171 TGETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHED----IFE  245 (370)
Q Consensus       171 ~~~~l~g~tvGIiGlG-~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~e  245 (370)
                      .+.+++||++.|||-+ .+|+++|..|...|+.|..+|.+.-..... .            ...-.+.....+    +.+
T Consensus        56 ~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~-~------------~~~~hs~t~~~~~~~~l~~  122 (197)
T cd01079          56 YGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTR-G------------ESIRHEKHHVTDEEAMTLD  122 (197)
T ss_pred             cCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCccccccc-c------------cccccccccccchhhHHHH
Confidence            4678999999999986 579999999999999999997532110000 0            000000000012    778


Q ss_pred             HHhcCCEEEEeccCChhhhcc-cCHHHHhcCCCCcEEEEcCC
Q 017490          246 FASKADVVVCCLSLNKQTAGI-VNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       246 ll~~aDiV~l~lP~t~~t~~l-i~~~~l~~mk~gailIN~sR  286 (370)
                      .+++||+|+.+++..    ++ +..+.   .|+|+++||+|-
T Consensus       123 ~~~~ADIVIsAvG~~----~~~i~~d~---ik~GavVIDVGi  157 (197)
T cd01079         123 CLSQSDVVITGVPSP----NYKVPTEL---LKDGAICINFAS  157 (197)
T ss_pred             HhhhCCEEEEccCCC----CCccCHHH---cCCCcEEEEcCC
Confidence            999999999999843    45 77766   589999999983

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=97.91  E-value=2.7e-05  Score=76.34  Aligned_cols=121  Identities=18%  Similarity=0.247  Sum_probs=73.4

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccc---cccCCCCCHHHHHhcCCEEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV---DEKGCHEDIFEFASKADVVV  254 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~ell~~aDiV~  254 (370)
                      ++|+|||.|.||..+|..|...|++|.+++|+.....  ... ..+.+....-....   .......+. +.+..+|+|+
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~~~--~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vi   78 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIGDE--LRA-HGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVL   78 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHHHH--HHh-cCceeecCCCcceecccceeEeccCh-hhccCCCEEE
Confidence            4799999999999999999999999999998532100  000 00000000000000   000012234 5678999999


Q ss_pred             EeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          255 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       255 l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      +++|.. +...++ ....+.++++.++|.+..| +...+.+.+.+...++.
T Consensus        79 l~vk~~-~~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~~  126 (341)
T PRK08229         79 VTVKSA-ATADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATVL  126 (341)
T ss_pred             EEecCc-chHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcEE
Confidence            999854 444444 3455667889999988654 44556677777655543

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=97.90  E-value=3.4e-05  Score=73.28  Aligned_cols=98  Identities=32%  Similarity=0.400  Sum_probs=74.1

Q ss_pred             ceEEEEecCchhHHHHHHhccCC----CEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCC
Q 017490          178 KTVFILGFGNIGVELAKRLRPFG----VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKAD  251 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G----~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aD  251 (370)
                      +++||||+|+||++++..+...|    .+|++.+|+.++..                 .+..+++  ...+.+++..++|
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~-----------------~l~~~~g~~~~~~~~~~~~~ad   64 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRA-----------------ALAAEYGVVTTTDNQEAVEEAD   64 (266)
T ss_pred             ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHH-----------------HHHHHcCCcccCcHHHHHhhCC
Confidence            47999999999999999998888    58999998865421                 1223333  2456778999999


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCC---CCcEEEEcCCCcccCHHHHHHHHH
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMK---KGSLLVNIARGGLLDYEAIAHYLE  300 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk---~gailIN~sRg~~vd~~aL~~aL~  300 (370)
                      +|++++..  +    .-.+.++.++   ++.++|.++-|  +..+.|.+.|.
T Consensus        65 vv~LavKP--q----~~~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~  108 (266)
T COG0345          65 VVFLAVKP--Q----DLEEVLSKLKPLTKDKLVISIAAG--VSIETLERLLG  108 (266)
T ss_pred             EEEEEeCh--H----hHHHHHHHhhcccCCCEEEEEeCC--CCHHHHHHHcC
Confidence            99999873  2    2245666666   68999999877  67788888776

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=97.89  E-value=1.6e-05  Score=73.47  Aligned_cols=105  Identities=24%  Similarity=0.260  Sum_probs=62.9

Q ss_pred             ceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEe
Q 017490          178 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  256 (370)
Q Consensus       178 ~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  256 (370)
                      ++|+||| .|.||+.+|+.|...|.+|.+++|+.++......   .+ . +..............+..+.++++|+|+++
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~---~~-~-~~~~~~g~~~~~~~~~~~ea~~~aDvVila   75 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAA---KA-L-EELGHGGSDIKVTGADNAEAAKRADVVILA   75 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHH---HH-H-hhccccCCCceEEEeChHHHHhcCCEEEEE
Confidence            3699997 9999999999999999999999987543110000   00 0 000000000000113567788999999999


Q ss_pred             ccCChhhhcccCHHHHhcCCCCcEEEEcCCCccc
Q 017490          257 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLL  290 (370)
Q Consensus       257 lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~v  290 (370)
                      +|.. ....++. +.-..++ +.++|++.-|--.
T Consensus        76 vp~~-~~~~~l~-~l~~~l~-~~vvI~~~ngi~~  106 (219)
T TIGR01915        76 VPWD-HVLKTLE-SLRDELS-GKLVISPVVPLAS  106 (219)
T ss_pred             CCHH-HHHHHHH-HHHHhcc-CCEEEEeccCcee
Confidence            9954 3333332 2222343 5899999877443

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.88  E-value=0.0002  Score=70.64  Aligned_cols=161  Identities=16%  Similarity=0.201  Sum_probs=114.8

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccc--cccCCCCCHHHH---HhcCCE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV--DEKGCHEDIFEF---ASKADV  252 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~el---l~~aDi  252 (370)
                      ..+|+||+|.||+.+|......|++|.+|||+..+...-             +.+..  .......+++|+   |+.---
T Consensus         4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f-------------~~~~~~~k~i~~~~sieefV~~Le~PRk   70 (473)
T COG0362           4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEF-------------LAERAKGKNIVPAYSIEEFVASLEKPRK   70 (473)
T ss_pred             cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHH-------------HHhCccCCCccccCcHHHHHHHhcCCce
Confidence            469999999999999999999999999999987652100             00111  111134567765   456777


Q ss_pred             EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceEEc
Q 017490          253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLIT  332 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilT  332 (370)
                      |++++-.-......| .+.+..|.+|-++|+-+...--|+..-.++|.+..|...|.-|...|-=.    +. =|-  +.
T Consensus        71 I~lMVkAG~~VD~~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA----~~-GPS--iM  142 (473)
T COG0362          71 ILLMVKAGTPVDAVI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGA----RH-GPS--IM  142 (473)
T ss_pred             EEEEEecCCcHHHHH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEecccccccccc----cc-CCC--cC
Confidence            888876542234444 36788899999999999999999999999999999999999998877421    11 122  22


Q ss_pred             cCCCCccHHHHHHHHHHHHHHHHHHHcCCCC
Q 017490          333 PHVGGVTEHSYRSMAKVVGDVALQLHAGTPL  363 (370)
Q Consensus       333 PHia~~t~~~~~~~~~~~~~ni~~~~~g~~~  363 (370)
                      |   |-+.++++.+...+ +.|-+-..|+|.
T Consensus       143 p---GG~~eay~~v~pil-~~IaAk~~g~pC  169 (473)
T COG0362         143 P---GGQKEAYELVAPIL-TKIAAKVDGEPC  169 (473)
T ss_pred             C---CCCHHHHHHHHHHH-HHHHhhcCCCCc
Confidence            3   77888988777654 444444457664

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.87  E-value=5.6e-05  Score=74.36  Aligned_cols=98  Identities=27%  Similarity=0.330  Sum_probs=70.7

Q ss_pred             cccccCceEEEEec-CchhHHHHHHhcc-CC-CEEEEEcCCCccccccccccchhhhcccccccccccc--CCCCCHHHH
Q 017490          172 GETLLGKTVFILGF-GNIGVELAKRLRP-FG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK--GCHEDIFEF  246 (370)
Q Consensus       172 ~~~l~g~tvGIiGl-G~IG~~vA~~l~~-~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~el  246 (370)
                      +..++|++|.|+|. |.||+.+|+.|.. .| .+++.++|+..+..                 .+..+.  +...++++.
T Consensus       150 g~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~-----------------~La~el~~~~i~~l~~~  212 (340)
T PRK14982        150 GIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQ-----------------ELQAELGGGKILSLEEA  212 (340)
T ss_pred             ccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHH-----------------HHHHHhccccHHhHHHH
Confidence            45789999999998 8999999999964 56 48999998744310                 111111  123468889


Q ss_pred             HhcCCEEEEeccCChhhhc-ccCHHHHhcCCCCcEEEEcCCCcccCH
Q 017490          247 ASKADVVVCCLSLNKQTAG-IVNKSFLSSMKKGSLLVNIARGGLLDY  292 (370)
Q Consensus       247 l~~aDiV~l~lP~t~~t~~-li~~~~l~~mk~gailIN~sRg~~vd~  292 (370)
                      +.++|+|+.+.-   .... +++.+.   ++++.++||.|+..=||.
T Consensus       213 l~~aDiVv~~ts---~~~~~~I~~~~---l~~~~~viDiAvPRDVd~  253 (340)
T PRK14982        213 LPEADIVVWVAS---MPKGVEIDPET---LKKPCLMIDGGYPKNLDT  253 (340)
T ss_pred             HccCCEEEECCc---CCcCCcCCHHH---hCCCeEEEEecCCCCCCc
Confidence            999999887643   2334 478765   489999999999877764

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=97.85  E-value=2.2e-05  Score=74.89  Aligned_cols=95  Identities=33%  Similarity=0.426  Sum_probs=69.6

Q ss_pred             cccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCE
Q 017490          174 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADV  252 (370)
Q Consensus       174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDi  252 (370)
                      -|.||+|+|||||+=|.+-|..|+..|.+|++--|..+..         +        ..+.+.+ ..-+.+|+.+.+|+
T Consensus        15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s---------~--------~kA~~dGf~V~~v~ea~k~ADv   77 (338)
T COG0059          15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSS---------W--------KKAKEDGFKVYTVEEAAKRADV   77 (338)
T ss_pred             HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchh---------H--------HHHHhcCCEeecHHHHhhcCCE
Confidence            5899999999999999999999999999988765544331         0        1111222 34578999999999


Q ss_pred             EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCC
Q 017490          253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg  287 (370)
                      |.+.+|...+ ..++..+.-..||+|+.| -.|.|
T Consensus        78 im~L~PDe~q-~~vy~~~I~p~Lk~G~aL-~FaHG  110 (338)
T COG0059          78 VMILLPDEQQ-KEVYEKEIAPNLKEGAAL-GFAHG  110 (338)
T ss_pred             EEEeCchhhH-HHHHHHHhhhhhcCCceE-Eeccc
Confidence            9999996543 345566777788998854 33443

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.84  E-value=9.5e-05  Score=70.91  Aligned_cols=124  Identities=19%  Similarity=0.345  Sum_probs=87.0

Q ss_pred             cccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490          172 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  250 (370)
Q Consensus       172 ~~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  250 (370)
                      +.+++||++.|||- ..+|+++|..|...|+.|+.++..                              ..++.+..++|
T Consensus       153 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~------------------------------t~~l~~~~~~A  202 (284)
T PRK14190        153 NIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK------------------------------TKNLAELTKQA  202 (284)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC------------------------------chhHHHHHHhC
Confidence            45799999999997 578999999999999999987532                              13688899999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceE
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL  330 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi  330 (370)
                      |+|+.++..    .++++.+++   |+|+++||+|.-.+.          +|++   .-||-..+       ... ---.
T Consensus       203 DIvI~AvG~----p~~i~~~~i---k~gavVIDvGi~~~~----------~gkl---~GDvd~e~-------v~~-~a~~  254 (284)
T PRK14190        203 DILIVAVGK----PKLITADMV---KEGAVVIDVGVNRLE----------NGKL---CGDVDFDN-------VKE-KASY  254 (284)
T ss_pred             CEEEEecCC----CCcCCHHHc---CCCCEEEEeeccccC----------CCCe---eccCcHHH-------Hhh-hceE
Confidence            999999863    347888775   899999999976641          3443   34663211       111 1246


Q ss_pred             EccCCCCccHHHHHHHHHHHHHH
Q 017490          331 ITPHVGGVTEHSYRSMAKVVGDV  353 (370)
Q Consensus       331 lTPHia~~t~~~~~~~~~~~~~n  353 (370)
                      +||.-||.-+-+..-+.+.+++.
T Consensus       255 iTPVPGGVGpvT~a~L~~N~~~a  277 (284)
T PRK14190        255 ITPVPGGVGPMTITMLMHNTVEL  277 (284)
T ss_pred             ecCCCCCChHHHHHHHHHHHHHH
Confidence            89987776554444444444433

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.83  E-value=8.2e-05  Score=71.12  Aligned_cols=80  Identities=19%  Similarity=0.324  Sum_probs=66.0

Q ss_pred             cccccCceEEEEecC-chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490          172 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  250 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG-~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  250 (370)
                      +.+++||++.|||-| .+|+++|..|...|+.|......                              ..++.+..++|
T Consensus       152 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~------------------------------T~~l~~~~~~A  201 (281)
T PRK14183        152 EIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIF------------------------------TKDLKAHTKKA  201 (281)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC------------------------------CcCHHHHHhhC
Confidence            358999999999998 89999999999899999876432                              13678889999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~  288 (370)
                      |+|++++.-    .+++..++   .|+|+++||+|--.
T Consensus       202 DIvV~AvGk----p~~i~~~~---vk~gavvIDvGin~  232 (281)
T PRK14183        202 DIVIVGVGK----PNLITEDM---VKEGAIVIDIGINR  232 (281)
T ss_pred             CEEEEecCc----ccccCHHH---cCCCcEEEEeeccc
Confidence            999999863    35788776   58999999998544

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=97.82  E-value=2.2e-05  Score=70.57  Aligned_cols=131  Identities=16%  Similarity=0.175  Sum_probs=74.4

Q ss_pred             eEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccc-cchhhh--ccccc-----cccccccCCCCCHHHHHhcC
Q 017490          179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSALAV--KNGII-----DDLVDEKGCHEDIFEFASKA  250 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~-~~~~~~--~~~~~-----~~~~~~~~~~~~l~ell~~a  250 (370)
                      +|+|||.|.||+.+|..+...|++|..||+++......... ...+..  ..+..     ...........+++++. .|
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a   79 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA   79 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence            69999999999999999999999999999976542111000 000000  00000     00000111236788877 99


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCC
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW  313 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~  313 (370)
                      |+|+=++|...+.+.-+-++.-+.++++++|...+.+  +....|...+. .+-+..++=.|.
T Consensus        80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs--l~i~~la~~~~-~p~R~ig~Hf~~  139 (180)
T PF02737_consen   80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNTSS--LSISELAAALS-RPERFIGMHFFN  139 (180)
T ss_dssp             SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS--S-HHHHHTTSS-TGGGEEEEEE-S
T ss_pred             heehhhccccHHHHHHHHHHHHHHhCCCceEEecCCC--CCHHHHHhccC-cCceEEEEeccc
Confidence            9999999988776665555566677889887655443  55666766664 233344555553

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.80  E-value=5e-05  Score=70.91  Aligned_cols=106  Identities=17%  Similarity=0.276  Sum_probs=67.4

Q ss_pred             cCceEEEEecCchhHHHHHHhccCC---CE-EEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhc
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFG---VK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASK  249 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G---~~-V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~  249 (370)
                      ..++|||||.|.+|+.+++.+...|   .+ +++++++.....                ......++  ...++++++++
T Consensus         3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~   66 (245)
T PRK07634          3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKL----------------DQLQARYNVSTTTDWKQHVTS   66 (245)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHH----------------HHHHHHcCcEEeCChHHHHhc
Confidence            3578999999999999999987665   33 777876421110                01111111  23578888999


Q ss_pred             CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 017490          250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG  302 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g  302 (370)
                      +|+|++++|.. ..+.++. +.-..++ +.++|.++-|  ++.+.|.+.+..+
T Consensus        67 ~DiViiavp~~-~~~~v~~-~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~~  114 (245)
T PRK07634         67 VDTIVLAMPPS-AHEELLA-ELSPLLS-NQLVVTVAAG--IGPSYLEERLPKG  114 (245)
T ss_pred             CCEEEEecCHH-HHHHHHH-HHHhhcc-CCEEEEECCC--CCHHHHHHHcCCC
Confidence            99999999943 3343332 2212233 6788988766  5666677666543

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=97.79  E-value=0.00012  Score=57.61  Aligned_cols=67  Identities=30%  Similarity=0.500  Sum_probs=53.6

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccC-CCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCC
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  251 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~-G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  251 (370)
                      ..+++++++|+|.|.+|+.+++.+... +.+|.++||                                          |
T Consensus        19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r------------------------------------------d   56 (86)
T cd05191          19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR------------------------------------------D   56 (86)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC------------------------------------------C
Confidence            558899999999999999999999988 456766531                                          9


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcC
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~s  285 (370)
                      +++.+.+..    +.+.++.++.+++++++++++
T Consensus        57 i~i~~~~~~----~~~~~~~~~~~~~~~~v~~~a   86 (86)
T cd05191          57 ILVTATPAG----VPVLEEATAKINEGAVVIDLA   86 (86)
T ss_pred             EEEEcCCCC----CCchHHHHHhcCCCCEEEecC
Confidence            999887643    345555688899999999874

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.78  E-value=0.0001  Score=66.61  Aligned_cols=110  Identities=19%  Similarity=0.208  Sum_probs=66.1

Q ss_pred             cccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCCCCHHHHHhc
Q 017490          172 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASK  249 (370)
Q Consensus       172 ~~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~  249 (370)
                      +..++++++.|+|. |.+|+.+++.+...|++|..++|+..+......   .+....+  ..... .....+++.+.+++
T Consensus        23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~---~l~~~~~--~~~~~~~~~~~~~~~~~~~~   97 (194)
T cd01078          23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAAD---SLRARFG--EGVGAVETSDDAARAAAIKG   97 (194)
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH---HHHhhcC--CcEEEeeCCCHHHHHHHHhc
Confidence            34678999999995 999999999999899999999987543110000   0000000  00000 00112344577889


Q ss_pred             CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCccc
Q 017490          250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLL  290 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~v  290 (370)
                      +|+|+.+.|....+  .+.  .-...+++.+++|+.+...+
T Consensus        98 ~diVi~at~~g~~~--~~~--~~~~~~~~~vv~D~~~~~~~  134 (194)
T cd01078          98 ADVVFAAGAAGVEL--LEK--LAWAPKPLAVAADVNAVPPV  134 (194)
T ss_pred             CCEEEECCCCCcee--chh--hhcccCceeEEEEccCCCCC
Confidence            99999998765431  111  11134557788888777654

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=97.78  E-value=3.2e-05  Score=74.74  Aligned_cols=136  Identities=24%  Similarity=0.326  Sum_probs=92.8

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHH-hcCCE
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFA-SKADV  252 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell-~~aDi  252 (370)
                      .-++|||||+|++|+-+|+.+...|..|+..||..-.                   +...+++  ..+.+.++. +.+|+
T Consensus        51 ~tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdys-------------------saa~~yg~~~ft~lhdlcerhpDv  111 (480)
T KOG2380|consen   51 ATLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYS-------------------SAAEKYGSAKFTLLHDLCERHPDV  111 (480)
T ss_pred             cceEEEEEecCcHHHHHHHHHHhcCceeEecCcchhH-------------------HHHHHhcccccccHHHHHhcCCCE
Confidence            3568999999999999999999999999999986411                   2233444  456777766 47999


Q ss_pred             EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCC----CCCCcccCCCc
Q 017490          253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPF----DPNDPILKFKN  328 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl----~~~~pL~~~~n  328 (370)
                      |++|+.. ..++.++-.--++++|.|++++++-.-....-+++.+.|-+.      .|....-|+    ..++..-.+|=
T Consensus       112 vLlctsi-lsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkd------fDIlctHpmfGPksvnh~wqglpf  184 (480)
T KOG2380|consen  112 VLLCTSI-LSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKD------FDILCTHPMFGPKSVNHEWQGLPF  184 (480)
T ss_pred             EEEEehh-hhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccc------cceEeecCCcCCCcCCCccccCce
Confidence            9999763 234455544456778999999998777767677777776543      344333332    23445555775


Q ss_pred             eEEccCCCCc
Q 017490          329 VLITPHVGGV  338 (370)
Q Consensus       329 vilTPHia~~  338 (370)
                      |+. -|-.|+
T Consensus       185 Vyd-kvRig~  193 (480)
T KOG2380|consen  185 VYD-KVRIGY  193 (480)
T ss_pred             EEE-Eeeccc
Confidence            555 455554

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.78  E-value=4.3e-05  Score=73.24  Aligned_cols=103  Identities=17%  Similarity=0.186  Sum_probs=64.9

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCC-CEEEEEcCCCccccccccccchhhhcccccccccccc-CCC-CCHHHHHhc
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-GCH-EDIFEFASK  249 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~l~ell~~  249 (370)
                      ..+.++++.|+|.|.+|+++++.|...| .+|.+++|+.++......             ...... ... .++.+.+.+
T Consensus       119 ~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~-------------~~~~~~~~~~~~~~~~~~~~  185 (278)
T PRK00258        119 VDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAK-------------LFGALGKAELDLELQEELAD  185 (278)
T ss_pred             CCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH-------------Hhhhccceeecccchhcccc
Confidence            3578999999999999999999999999 689999998654211000             000000 001 134466788


Q ss_pred             CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490          250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~  288 (370)
                      +|+|+.++|.......-...-.+..++++.+++++.-.+
T Consensus       186 ~DivInaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P  224 (278)
T PRK00258        186 FDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGP  224 (278)
T ss_pred             CCEEEECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCC
Confidence            999999999653211000111224457777888776644

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.77  E-value=0.00019  Score=68.71  Aligned_cols=128  Identities=21%  Similarity=0.325  Sum_probs=88.2

Q ss_pred             cccccCceEEEEecC-chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490          172 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  250 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG-~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  250 (370)
                      +.++.||++.|||-+ .+|+++|..|...|+.|..+....                              .++.+..++|
T Consensus       152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T------------------------------~~l~~~~~~A  201 (284)
T PRK14170        152 GTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT------------------------------KDLPQVAKEA  201 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------------------------CCHHHHHhhC
Confidence            568999999999985 579999999999999999875321                              3688889999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceE
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL  330 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi  330 (370)
                      |+|+.+++..    +++..+.   .|+|+++||+|--.+.          +|++   .-||-...       .... --.
T Consensus       202 DIvI~AvG~~----~~i~~~~---vk~GavVIDvGin~~~----------~gkl---~GDvdfe~-------~~~~-a~~  253 (284)
T PRK14170        202 DILVVATGLA----KFVKKDY---IKPGAIVIDVGMDRDE----------NNKL---CGDVDFDD-------VVEE-AGF  253 (284)
T ss_pred             CEEEEecCCc----CccCHHH---cCCCCEEEEccCcccC----------CCCe---ecccchHH-------HHhh-ccE
Confidence            9999998743    5688766   5899999999866531          3544   34662111       0111 136


Q ss_pred             EccCCCCccHHHHHHHHHHHHHHHHHH
Q 017490          331 ITPHVGGVTEHSYRSMAKVVGDVALQL  357 (370)
Q Consensus       331 lTPHia~~t~~~~~~~~~~~~~ni~~~  357 (370)
                      +||-=||.-+-+...+.+.+++..++.
T Consensus       254 iTPVPGGVGpvT~a~L~~N~~~a~~~~  280 (284)
T PRK14170        254 ITPVPGGVGPMTITMLLANTLKAAKRI  280 (284)
T ss_pred             ecCCCCChHHHHHHHHHHHHHHHHHHH
Confidence            788777765555444444444444443

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.74  E-value=0.00062  Score=65.24  Aligned_cols=127  Identities=20%  Similarity=0.249  Sum_probs=87.8

Q ss_pred             cccccCceEEEEecC-chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490          172 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  250 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG-~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  250 (370)
                      +.++.||++.|||-+ .+|+++|..|...|+.|..+...                              ..++.+..++|
T Consensus       151 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~------------------------------T~~l~~~~~~A  200 (282)
T PRK14169        151 DIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSK------------------------------TRNLKQLTKEA  200 (282)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCC------------------------------CCCHHHHHhhC
Confidence            457999999999985 67999999999999999987532                              13688889999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceE
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL  330 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi  330 (370)
                      |+|+++++-    .++++.++   +|+|+++||+|--.+.          +|++   .-||-..+-       . ----.
T Consensus       201 DIvI~AvG~----p~~i~~~~---vk~GavVIDvGin~~~----------~gkl---~GDVd~~~v-------~-~~a~~  252 (282)
T PRK14169        201 DILVVAVGV----PHFIGADA---VKPGAVVIDVGISRGA----------DGKL---LGDVDEAAV-------A-PIASA  252 (282)
T ss_pred             CEEEEccCC----cCccCHHH---cCCCcEEEEeeccccC----------CCCe---eecCcHHHH-------H-hhccE
Confidence            999999884    35688775   5899999999865431          3443   446632211       1 11246


Q ss_pred             EccCCCCccHHHHHHHHHHHHHHHHH
Q 017490          331 ITPHVGGVTEHSYRSMAKVVGDVALQ  356 (370)
Q Consensus       331 lTPHia~~t~~~~~~~~~~~~~ni~~  356 (370)
                      +||-=||.-+-+...+.+.+++..++
T Consensus       253 iTPVPGGVGp~T~a~L~~N~~~a~~~  278 (282)
T PRK14169        253 ITPVPGGVGPMTIASLMAQTVTLAKR  278 (282)
T ss_pred             ecCCCCCcHHHHHHHHHHHHHHHHHH
Confidence            89977776554444444444444433

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=97.72  E-value=4.4e-05  Score=76.58  Aligned_cols=96  Identities=29%  Similarity=0.454  Sum_probs=69.6

Q ss_pred             cccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHHh
Q 017490          174 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFAS  248 (370)
Q Consensus       174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~  248 (370)
                      .|.++++.|||+|.||.-+|+.|...|. +|++.+|+..+..                 +++.+.+    ...++.+.+.
T Consensus       175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~-----------------~La~~~~~~~~~l~el~~~l~  237 (414)
T COG0373         175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAE-----------------ELAKKLGAEAVALEELLEALA  237 (414)
T ss_pred             ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHH-----------------HHHHHhCCeeecHHHHHHhhh
Confidence            4899999999999999999999999995 7999999876531                 2222222    3456778899


Q ss_pred             cCCEEEEeccCChhhhcccCHHHHhcC---CCCcEEEEcCCCcc
Q 017490          249 KADVVVCCLSLNKQTAGIVNKSFLSSM---KKGSLLVNIARGGL  289 (370)
Q Consensus       249 ~aDiV~l~lP~t~~t~~li~~~~l~~m---k~gailIN~sRg~~  289 (370)
                      ++|+|+.+   |.+...++..+.+...   ++.-++||.+-..-
T Consensus       238 ~~DvViss---Tsa~~~ii~~~~ve~a~~~r~~~livDiavPRd  278 (414)
T COG0373         238 EADVVISS---TSAPHPIITREMVERALKIRKRLLIVDIAVPRD  278 (414)
T ss_pred             hCCEEEEe---cCCCccccCHHHHHHHHhcccCeEEEEecCCCC
Confidence            99999999   4455667776654432   11247777765443

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=97.72  E-value=0.00011  Score=70.59  Aligned_cols=118  Identities=19%  Similarity=0.251  Sum_probs=71.8

Q ss_pred             eEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEecc
Q 017490          179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLS  258 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP  258 (370)
                      +|+|||.|.||..+|..|...|++|..++|+.+.......  ..+.+.++   ..........+.+++ +.+|+|++++|
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~--~g~~~~~~---~~~~~~~~~~~~~~~-~~~d~vila~k   75 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNE--NGLRLEDG---EITVPVLAADDPAEL-GPQDLVILAVK   75 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHH--cCCcccCC---ceeecccCCCChhHc-CCCCEEEEecc
Confidence            6999999999999999999889999999985433110000  00000000   000000112345555 89999999999


Q ss_pred             CChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          259 LNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       259 ~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      .. ++..++. ...+.+.+++.+|....| +-.++.+.+.+....+.
T Consensus        76 ~~-~~~~~~~-~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~  119 (304)
T PRK06522         76 AY-QLPAALP-SLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVL  119 (304)
T ss_pred             cc-cHHHHHH-HHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEE
Confidence            53 4444432 333456677888888777 33456666666655554

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=97.72  E-value=7.9e-05  Score=70.68  Aligned_cols=97  Identities=18%  Similarity=0.244  Sum_probs=63.6

Q ss_pred             CceEEEEecCchhHHHHHHhccCC----CEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCE
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFG----VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  252 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G----~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  252 (370)
                      ..+|||||+|+||.++++.+...|    .+|++++++....                  . .   ....+..+++.+||+
T Consensus         3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------------------~-~---~~~~~~~~~~~~~D~   60 (260)
T PTZ00431          3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------------------P-F---VYLQSNEELAKTCDI   60 (260)
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------------------C-e---EEeCChHHHHHhCCE
Confidence            468999999999999999998665    2599998864321                  0 0   012456677889999


Q ss_pred             EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 017490          253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE  300 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~  300 (370)
                      |++|+| ...++.++. +....++++ .+|.+.-|  +..+.+.+.+.
T Consensus        61 Vilavk-p~~~~~vl~-~i~~~l~~~-~iIS~~aG--i~~~~l~~~~~  103 (260)
T PTZ00431         61 IVLAVK-PDLAGKVLL-EIKPYLGSK-LLISICGG--LNLKTLEEMVG  103 (260)
T ss_pred             EEEEeC-HHHHHHHHH-HHHhhccCC-EEEEEeCC--ccHHHHHHHcC
Confidence            999988 345555554 233345554 45555444  44666665554

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.71  E-value=0.00018  Score=69.00  Aligned_cols=80  Identities=15%  Similarity=0.326  Sum_probs=66.2

Q ss_pred             cccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490          172 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  250 (370)
Q Consensus       172 ~~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  250 (370)
                      +.++.||++.|||- ..+|+++|..|...|+.|..++...                              .++.+..++|
T Consensus       154 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T------------------------------~~l~~~~~~A  203 (284)
T PRK14177        154 GIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT------------------------------QNLPSIVRQA  203 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------------------------CCHHHHHhhC
Confidence            46799999999997 5689999999999999999986431                              3678889999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~  288 (370)
                      |+|+.+++-    .+++..++   .|+|+++||+|--.
T Consensus       204 DIvIsAvGk----~~~i~~~~---ik~gavVIDvGin~  234 (284)
T PRK14177        204 DIIVGAVGK----PEFIKADW---ISEGAVLLDAGYNP  234 (284)
T ss_pred             CEEEEeCCC----cCccCHHH---cCCCCEEEEecCcc
Confidence            999999873    35688766   58999999998543

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.70  E-value=0.00026  Score=68.24  Aligned_cols=131  Identities=19%  Similarity=0.243  Sum_probs=89.2

Q ss_pred             cccccCceEEEEecC-chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490          172 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  250 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG-~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  250 (370)
                      +.+++||++.|||-+ .+|+++|..|...|+.|..+...                              ..++++..++|
T Consensus       153 ~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~------------------------------T~~l~~~~~~A  202 (297)
T PRK14186        153 QIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSR------------------------------TQDLASITREA  202 (297)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC------------------------------CCCHHHHHhhC
Confidence            468999999999985 67999999999999999887532                              13688889999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceE
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL  330 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi  330 (370)
                      |+|+++++-.    +++..++   +|+|+++||+|--.+.+..      ++|++   .-||-..+       .... --.
T Consensus       203 DIvIsAvGkp----~~i~~~~---ik~gavVIDvGin~~~~~~------~~gkl---~GDvd~~~-------v~~~-a~~  258 (297)
T PRK14186        203 DILVAAAGRP----NLIGAEM---VKPGAVVVDVGIHRLPSSD------GKTRL---CGDVDFEE-------VEPV-AAA  258 (297)
T ss_pred             CEEEEccCCc----CccCHHH---cCCCCEEEEeccccccccc------cCCce---eCCccHHH-------HHhh-ceE
Confidence            9999998833    5788766   5899999999866532211      13443   34553211       1111 236


Q ss_pred             EccCCCCccHHHHHHHHHHHHHHHHH
Q 017490          331 ITPHVGGVTEHSYRSMAKVVGDVALQ  356 (370)
Q Consensus       331 lTPHia~~t~~~~~~~~~~~~~ni~~  356 (370)
                      +||--||.-+-+...+.+.+++..++
T Consensus       259 iTPVPGGVGp~T~a~L~~Nl~~a~~~  284 (297)
T PRK14186        259 ITPVPGGVGPMTVTMLLVNTVLSWQK  284 (297)
T ss_pred             ecCCCCCchHHHHHHHHHHHHHHHHH
Confidence            89987877555544444444444433

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.70  E-value=0.00027  Score=67.60  Aligned_cols=80  Identities=18%  Similarity=0.378  Sum_probs=66.0

Q ss_pred             cccccCceEEEEecC-chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490          172 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  250 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG-~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  250 (370)
                      +.+++||++.|||-+ .+|+++|..|...|+.|..+....                              .++.+..++|
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T------------------------------~~l~~~~~~A  202 (278)
T PRK14172        153 NIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT------------------------------KNLKEVCKKA  202 (278)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC------------------------------CCHHHHHhhC
Confidence            357999999999985 679999999999999999886421                              2688889999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~  288 (370)
                      |+|+.+++..    ++++.++   .|+|+++||+|--.
T Consensus       203 DIvIsAvGkp----~~i~~~~---ik~gavVIDvGin~  233 (278)
T PRK14172        203 DILVVAIGRP----KFIDEEY---VKEGAIVIDVGTSS  233 (278)
T ss_pred             CEEEEcCCCc----CccCHHH---cCCCcEEEEeeccc
Confidence            9999998743    5788776   58999999997544

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.70  E-value=0.00019  Score=68.96  Aligned_cols=135  Identities=22%  Similarity=0.287  Sum_probs=91.5

Q ss_pred             cccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490          172 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  250 (370)
Q Consensus       172 ~~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  250 (370)
                      +.++.||++.|||- ..+|+++|..|...|+.|..+....                              .++++..++|
T Consensus       150 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T------------------------------~~l~~~~~~A  199 (287)
T PRK14173        150 GIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT------------------------------QDLPAVTRRA  199 (287)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC------------------------------CCHHHHHhhC
Confidence            46799999999997 5689999999999999999875421                              3688889999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceE
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL  330 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi  330 (370)
                      |+|++++.-    .++++.++   +|+|+++||+|.-.+.+        ++|+. ...-||- .+       ..... -.
T Consensus       200 DIvIsAvGk----p~~i~~~~---vk~GavVIDVGin~~~~--------~~gk~-~l~GDVd-~~-------v~~~a-~~  254 (287)
T PRK14173        200 DVLVVAVGR----PHLITPEM---VRPGAVVVDVGINRVGG--------NGGRD-ILTGDVH-PE-------VAEVA-GA  254 (287)
T ss_pred             CEEEEecCC----cCccCHHH---cCCCCEEEEccCccccC--------CCCce-eeecccc-Hh-------HHhhC-cE
Confidence            999999873    35788776   48999999999766432        13431 0344664 11       11111 25


Q ss_pred             EccCCCCccHHHHHHHHHHHHHHHHHHHcCC
Q 017490          331 ITPHVGGVTEHSYRSMAKVVGDVALQLHAGT  361 (370)
Q Consensus       331 lTPHia~~t~~~~~~~~~~~~~ni~~~~~g~  361 (370)
                      +||-=||.-+-+...+.+.+++..++...|+
T Consensus       255 iTPVPGGVGp~T~a~L~~N~~~a~~~~~~~~  285 (287)
T PRK14173        255 LTPVPGGVGPMTVAMLMANTVIAALRRRGGR  285 (287)
T ss_pred             EecCCCChhHHHHHHHHHHHHHHHHHHccCC
Confidence            7887677655444444555555445544443

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=97.69  E-value=0.0001  Score=70.91  Aligned_cols=121  Identities=15%  Similarity=0.211  Sum_probs=73.1

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEec
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  257 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  257 (370)
                      ++|+|+|.|.||..+|..|...|++|..++| .........  ..+...... .+.........+.++....+|+|++++
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~--~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~vilav   76 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRE--RGLVIRSDH-GDAVVPGPVITDPEELTGPFDLVILAV   76 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHh--CCeEEEeCC-CeEEecceeecCHHHccCCCCEEEEEe
Confidence            3699999999999999999998999999998 332100000  000000000 000000001235566668999999999


Q ss_pred             cCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          258 SLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       258 P~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      |.. +++.++ ....+.++++.++|.+.-| +-.++.+.+.+.+.++.
T Consensus        77 k~~-~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~  121 (305)
T PRK12921         77 KAY-QLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL  121 (305)
T ss_pred             ccc-CHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE
Confidence            953 444443 2333446778888888766 44567777777665544

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=97.69  E-value=0.00028  Score=69.92  Aligned_cols=151  Identities=15%  Similarity=0.174  Sum_probs=99.2

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC------CCCCHHHHHhcCC
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG------CHEDIFEFASKAD  251 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~ell~~aD  251 (370)
                      ++|.|+|.|.+|...+..+..+|++|+.+|..+.+-..-...-..+..+  -+.++..+..      ...+.++.++++|
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~Ep--gLe~ll~~~~~~gRl~fTtd~~~a~~~ad   78 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEP--GLEELLKENLASGRLRFTTDYEEAVKDAD   78 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCc--cHHHHHHhccccCcEEEEcCHHHHHhcCC
Confidence            4789999999999999999999999999998765421110000011111  1112222111      2357888999999


Q ss_pred             EEEEeccCChhhhcccC--------HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEec-CCCCCCCCCCc
Q 017490          252 VVVCCLSLNKQTAGIVN--------KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV-AWTEPFDPNDP  322 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~--------~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV-~~~EPl~~~~p  322 (370)
                      ++++++|..+...+-+|        ++..+.++..+++|+=|.-.+-..+.+.+.+.+..-.. -++| +.+|=|-..+.
T Consensus        79 v~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLREG~A  157 (414)
T COG1004          79 VVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLREGSA  157 (414)
T ss_pred             EEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcCcch
Confidence            99999996554444444        23556677779999999999999998888887765432 2232 56676666655


Q ss_pred             ccC---CCceEE
Q 017490          323 ILK---FKNVLI  331 (370)
Q Consensus       323 L~~---~~nvil  331 (370)
                      +.+   -+++++
T Consensus       158 v~D~~~PdRIVi  169 (414)
T COG1004         158 VYDFLYPDRIVI  169 (414)
T ss_pred             hhhccCCCeEEE
Confidence            544   344554

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.67  E-value=0.0003  Score=67.58  Aligned_cols=127  Identities=20%  Similarity=0.263  Sum_probs=87.0

Q ss_pred             cccccCceEEEEecC-chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490          172 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  250 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG-~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  250 (370)
                      +.++.||++.|||-+ .+|+++|..|...|+.|..+...                              ..++.+..++|
T Consensus       154 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~------------------------------T~~L~~~~~~A  203 (288)
T PRK14171        154 EPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSK------------------------------THNLSSITSKA  203 (288)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC------------------------------CCCHHHHHhhC
Confidence            357999999999985 57999999999999999987532                              13688889999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceE
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL  330 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi  330 (370)
                      |+|+.++.-    .+++..++   .|+|+++||+|--.+          .+|++   .-||-..+-        ..---.
T Consensus       204 DIvV~AvGk----p~~i~~~~---vk~GavVIDvGin~~----------~~gkl---~GDVd~~~v--------~~~a~~  255 (288)
T PRK14171        204 DIVVAAIGS----PLKLTAEY---FNPESIVIDVGINRI----------SGNKI---IGDVDFENV--------KSKVKY  255 (288)
T ss_pred             CEEEEccCC----CCccCHHH---cCCCCEEEEeecccc----------CCCCe---ECCccHHHH--------HhhceE
Confidence            999999873    35788776   589999999985432          13443   345531111        111136


Q ss_pred             EccCCCCccHHHHHHHHHHHHHHHHH
Q 017490          331 ITPHVGGVTEHSYRSMAKVVGDVALQ  356 (370)
Q Consensus       331 lTPHia~~t~~~~~~~~~~~~~ni~~  356 (370)
                      +||-=||.-+-+..-+.+.+++..++
T Consensus       256 iTPVPGGVGp~T~a~L~~N~v~a~~~  281 (288)
T PRK14171        256 ITPVPGGIGPMTIAFLLKNTVKAFKD  281 (288)
T ss_pred             eCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence            79977777655554444444444433

>PRK06141 ornithine cyclodeaminase; Validated

Probab=97.66  E-value=0.0001  Score=71.95  Aligned_cols=91  Identities=19%  Similarity=0.209  Sum_probs=60.1

Q ss_pred             cCceEEEEecCchhHHHHHHhcc-CC-CEEEEEcCCCccccccccccchhhhcccccccccc---ccCCCCCHHHHHhcC
Q 017490          176 LGKTVFILGFGNIGVELAKRLRP-FG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD---EKGCHEDIFEFASKA  250 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~-~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~ell~~a  250 (370)
                      ..++|+|||+|.+|+.+++.+.. ++ .+|.+|+|++.+...       +.      .+...   ......++++.+.+|
T Consensus       124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~-------~a------~~~~~~g~~~~~~~~~~~av~~a  190 (314)
T PRK06141        124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEA-------LA------AELRAQGFDAEVVTDLEAAVRQA  190 (314)
T ss_pred             CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHH-------HH------HHHHhcCCceEEeCCHHHHHhcC
Confidence            46799999999999999985543 44 589999998655211       00      00000   011236788899999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcC
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~s  285 (370)
                      |+|+++.|..   +.++..+   .++||+.+.-++
T Consensus       191 DIVi~aT~s~---~pvl~~~---~l~~g~~i~~ig  219 (314)
T PRK06141        191 DIISCATLST---EPLVRGE---WLKPGTHLDLVG  219 (314)
T ss_pred             CEEEEeeCCC---CCEecHH---HcCCCCEEEeeC
Confidence            9998887643   5667654   468999544444

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.66  E-value=0.00022  Score=68.34  Aligned_cols=80  Identities=19%  Similarity=0.342  Sum_probs=66.1

Q ss_pred             cccccCceEEEEecC-chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490          172 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  250 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG-~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  250 (370)
                      +.++.||++.|||-+ .+|+++|..|...|+.|..+....                              .++.+..++|
T Consensus       152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T------------------------------~nl~~~~~~A  201 (282)
T PRK14166        152 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT------------------------------KDLSLYTRQA  201 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------------------------CCHHHHHhhC
Confidence            457999999999985 579999999998999999876431                              3688889999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~  288 (370)
                      |+|+.++.-    .+++++++   .|+|+++||+|--.
T Consensus       202 DIvIsAvGk----p~~i~~~~---vk~GavVIDvGin~  232 (282)
T PRK14166        202 DLIIVAAGC----VNLLRSDM---VKEGVIVVDVGINR  232 (282)
T ss_pred             CEEEEcCCC----cCccCHHH---cCCCCEEEEecccc
Confidence            999999873    35788776   58999999998544

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.63  E-value=0.00025  Score=67.92  Aligned_cols=80  Identities=15%  Similarity=0.317  Sum_probs=65.7

Q ss_pred             cccccCceEEEEecC-chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490          172 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  250 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG-~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  250 (370)
                      +.+++||++.|||-+ .+|+++|..|...|+.|..+....                              .++.+..++|
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T------------------------------~dl~~~~k~A  202 (282)
T PRK14180        153 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT------------------------------TDLKSHTTKA  202 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC------------------------------CCHHHHhhhc
Confidence            467999999999985 679999999999999999876431                              3677889999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~  288 (370)
                      |+|+++++-    .+++..++   .|+|+++||+|--.
T Consensus       203 DIvIsAvGk----p~~i~~~~---vk~gavVIDvGin~  233 (282)
T PRK14180        203 DILIVAVGK----PNFITADM---VKEGAVVIDVGINH  233 (282)
T ss_pred             CEEEEccCC----cCcCCHHH---cCCCcEEEEecccc
Confidence            999999874    35688766   58999999998543

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.62  E-value=0.00025  Score=68.26  Aligned_cols=80  Identities=21%  Similarity=0.417  Sum_probs=66.2

Q ss_pred             cccccCceEEEEecC-chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490          172 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  250 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG-~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  250 (370)
                      +.++.||++.|||-+ .+|+++|..|...|+.|..+....                              .++.+..++|
T Consensus       155 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T------------------------------~~l~~~~~~A  204 (294)
T PRK14187        155 TRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT------------------------------RDLADYCSKA  204 (294)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC------------------------------CCHHHHHhhC
Confidence            467999999999985 679999999999999999876421                              3688889999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~  288 (370)
                      |+|+.+++-    .+++..++   .|+|+++||+|--.
T Consensus       205 DIvVsAvGk----p~~i~~~~---ik~gaiVIDVGin~  235 (294)
T PRK14187        205 DILVAAVGI----PNFVKYSW---IKKGAIVIDVGINS  235 (294)
T ss_pred             CEEEEccCC----cCccCHHH---cCCCCEEEEecccc
Confidence            999999874    35688776   57999999998654

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=97.62  E-value=0.0001  Score=72.82  Aligned_cols=98  Identities=15%  Similarity=0.197  Sum_probs=69.3

Q ss_pred             hHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCCEEEEeccCChhhhcc
Q 017490          189 GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCCLSLNKQTAGI  266 (370)
Q Consensus       189 G~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~l~lP~t~~t~~l  266 (370)
                      |..+|..|...|++|++||++........             .+.....+  ...+..+++++||+|++++|....++.+
T Consensus        32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~-------------~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~V   98 (342)
T PRK12557         32 GSRMAIEFAEAGHDVVLAEPNRSILSEEL-------------WKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEI   98 (342)
T ss_pred             HHHHHHHHHhCCCeEEEEECCHHHhhHHH-------------HHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHH
Confidence            78999999989999999998754210000             00011111  2347778889999999999966547777


Q ss_pred             cCHHHHhcCCCCcEEEEcCCCcccCH-HHHHHHHH
Q 017490          267 VNKSFLSSMKKGSLLVNIARGGLLDY-EAIAHYLE  300 (370)
Q Consensus       267 i~~~~l~~mk~gailIN~sRg~~vd~-~aL~~aL~  300 (370)
                      +. +....+++|+++||++.+..... +.+.+.+.
T Consensus        99 l~-~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~  132 (342)
T PRK12557         99 AK-NILPHLPENAVICNTCTVSPVVLYYSLEGELR  132 (342)
T ss_pred             HH-HHHhhCCCCCEEEEecCCCHHHHHHHHHHHhc
Confidence            73 67788999999999999877655 55666664

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.60  E-value=8e-05  Score=75.36  Aligned_cols=92  Identities=17%  Similarity=0.350  Sum_probs=64.4

Q ss_pred             cccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhcccccccccccc-----CCCCCHHHHH
Q 017490          174 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-----GCHEDIFEFA  247 (370)
Q Consensus       174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~ell  247 (370)
                      .+.|+++.|||.|.+|+.+|+.|...|. +|++++|+..+..                 .+..++     ..++++.+.+
T Consensus       178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~-----------------~La~~~~~~~~~~~~~l~~~l  240 (414)
T PRK13940        178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQ-----------------KITSAFRNASAHYLSELPQLI  240 (414)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHH-----------------HHHHHhcCCeEecHHHHHHHh
Confidence            5889999999999999999999999996 7999999865421                 111111     1235667789


Q ss_pred             hcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCC
Q 017490          248 SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       248 ~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg  287 (370)
                      .++|+|+.|.+.   ...+|..+.+.  .+.-++||.|-.
T Consensus       241 ~~aDiVI~aT~a---~~~vi~~~~~~--~~~~~~iDLavP  275 (414)
T PRK13940        241 KKADIIIAAVNV---LEYIVTCKYVG--DKPRVFIDISIP  275 (414)
T ss_pred             ccCCEEEECcCC---CCeeECHHHhC--CCCeEEEEeCCC
Confidence            999999999653   34567765542  123466666543

>PRK07340 ornithine cyclodeaminase; Validated

Probab=97.60  E-value=8.5e-05  Score=72.19  Aligned_cols=93  Identities=14%  Similarity=0.129  Sum_probs=65.7

Q ss_pred             cCceEEEEecCchhHHHHHHhcc-CCC-EEEEEcCCCccccccccccchhhhcccccccccccc-C-CCCCHHHHHhcCC
Q 017490          176 LGKTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-G-CHEDIFEFASKAD  251 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~-~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~l~ell~~aD  251 (370)
                      ..++++|||.|.+|+..++.+.. ++. +|.+|+|++.+...       +.      ....... . ...+.++++.++|
T Consensus       124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~-------~a------~~~~~~~~~~~~~~~~~av~~aD  190 (304)
T PRK07340        124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAA-------FC------AHARALGPTAEPLDGEAIPEAVD  190 (304)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHH-------HH------HHHHhcCCeeEECCHHHHhhcCC
Confidence            56799999999999999998864 665 69999998654211       00      0010000 0 1357889999999


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~  288 (370)
                      +|+.+.|.+   +.+++.    .+|||+.++.+|.-.
T Consensus       191 iVitaT~s~---~Pl~~~----~~~~g~hi~~iGs~~  220 (304)
T PRK07340        191 LVVTATTSR---TPVYPE----AARAGRLVVAVGAFT  220 (304)
T ss_pred             EEEEccCCC---CceeCc----cCCCCCEEEecCCCC
Confidence            999997744   467764    269999999998543

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.58  E-value=0.00036  Score=66.93  Aligned_cols=122  Identities=18%  Similarity=0.292  Sum_probs=86.3

Q ss_pred             cccccCceEEEEec-CchhHHHHHHhcc--CCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHh
Q 017490          172 GETLLGKTVFILGF-GNIGVELAKRLRP--FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS  248 (370)
Q Consensus       172 ~~~l~g~tvGIiGl-G~IG~~vA~~l~~--~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  248 (370)
                      +.++.||++.|||- +.+|+++|..|..  .|+.|..+...                              ..++.+..+
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~------------------------------T~~l~~~~k  202 (284)
T PRK14193        153 DVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG------------------------------TRDLAAHTR  202 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC------------------------------CCCHHHHHH
Confidence            46799999999997 5689999999987  78999887542                              136888999


Q ss_pred             cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCc
Q 017490          249 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKN  328 (370)
Q Consensus       249 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~n  328 (370)
                      +||+|+.++.-.    +++..++   +|+|+++||+|.-.+          .+|++   .-||- .+       ..... 
T Consensus       203 ~ADIvV~AvGkp----~~i~~~~---ik~GavVIDvGin~~----------~~gkl---~GDvd-~~-------v~~~a-  253 (284)
T PRK14193        203 RADIIVAAAGVA----HLVTADM---VKPGAAVLDVGVSRA----------GDGKL---VGDVH-PD-------VWEVA-  253 (284)
T ss_pred             hCCEEEEecCCc----CccCHHH---cCCCCEEEEcccccc----------CCCcE---EeecC-Hh-------HHhhC-
Confidence            999999998743    5788776   589999999986653          23443   45775 22       11222 


Q ss_pred             eEEccCCCCccHHHHHHHHHHHHH
Q 017490          329 VLITPHVGGVTEHSYRSMAKVVGD  352 (370)
Q Consensus       329 vilTPHia~~t~~~~~~~~~~~~~  352 (370)
                      -.+||-=||.-+-+...+.+.+++
T Consensus       254 ~~iTPVPGGVGp~T~a~L~~N~~~  277 (284)
T PRK14193        254 GAVSPNPGGVGPMTRAFLLTNVVE  277 (284)
T ss_pred             CEEeCCCCChhHHHHHHHHHHHHH
Confidence            258998777655444444444333

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=97.58  E-value=0.00034  Score=67.54  Aligned_cols=135  Identities=21%  Similarity=0.260  Sum_probs=90.4

Q ss_pred             cccccCceEEEEecC-chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490          172 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  250 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG-~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  250 (370)
                      +.++.||++.|||-+ .+|+++|..|...|+.|+.+....                              .++++..++|
T Consensus       162 ~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T------------------------------~nl~~~~~~A  211 (299)
T PLN02516        162 GIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRT------------------------------PDPESIVREA  211 (299)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC------------------------------CCHHHHHhhC
Confidence            468999999999985 579999999999999999985421                              3688899999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceE
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL  330 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi  330 (370)
                      |+|+.++.-    .+++..++   +|+|+++||+|--..-+.     ...+|.  ...-||...+-        ...--.
T Consensus       212 DIvv~AvGk----~~~i~~~~---vk~gavVIDvGin~~~~~-----~~~~g~--kl~GDvd~e~v--------~~~a~~  269 (299)
T PLN02516        212 DIVIAAAGQ----AMMIKGDW---IKPGAAVIDVGTNAVSDP-----SKKSGY--RLVGDVDFAEV--------SKVAGW  269 (299)
T ss_pred             CEEEEcCCC----cCccCHHH---cCCCCEEEEeeccccCcc-----cccCCC--ceEcCcChHHh--------hhhceE
Confidence            999999864    36888776   589999999985442211     111121  13456642111        111235


Q ss_pred             EccCCCCccHHHHHHHHHHHHHHHHHHH
Q 017490          331 ITPHVGGVTEHSYRSMAKVVGDVALQLH  358 (370)
Q Consensus       331 lTPHia~~t~~~~~~~~~~~~~ni~~~~  358 (370)
                      +||--||.-+-+...+.+.+++..++++
T Consensus       270 iTPVPGGVGp~T~a~L~~N~v~a~~~~~  297 (299)
T PLN02516        270 ITPVPGGVGPMTVAMLLKNTVDGAKRVF  297 (299)
T ss_pred             ecCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence            8997777655555555555555555544

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=97.58  E-value=0.00084  Score=63.94  Aligned_cols=120  Identities=26%  Similarity=0.380  Sum_probs=86.7

Q ss_pred             cccccCceEEEEecCc-hhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490          172 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  250 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~-IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  250 (370)
                      +.+++|+++.|||-++ +|++++..|...++.|.+...+.                              .++.+..++|
T Consensus       151 ~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T------------------------------~~l~~~~k~A  200 (283)
T COG0190         151 GIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT------------------------------KDLASITKNA  200 (283)
T ss_pred             CCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC------------------------------CCHHHHhhhC
Confidence            4589999999999986 58999999999999999986532                              3677889999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceE
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL  330 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi  330 (370)
                      |+|+.++-.    .+++.+++   .|+|+++|+++--.+-+          +++   .-||-..+        .....-.
T Consensus       201 DIvv~AvG~----p~~i~~d~---vk~gavVIDVGinrv~~----------~kl---~GDVdf~~--------v~~~a~~  252 (283)
T COG0190         201 DIVVVAVGK----PHFIKADM---VKPGAVVIDVGINRVND----------GKL---VGDVDFDS--------VKEKASA  252 (283)
T ss_pred             CEEEEecCC----cccccccc---ccCCCEEEecCCccccC----------Cce---EeeccHHH--------HHHhhcc
Confidence            999999763    35777655   68999999998765433          444   45764332        2223345


Q ss_pred             EccCCCCccHHHHHHHHHH
Q 017490          331 ITPHVGGVTEHSYRSMAKV  349 (370)
Q Consensus       331 lTPHia~~t~~~~~~~~~~  349 (370)
                      +||--||.-+-+...+.+.
T Consensus       253 iTPVPGGVGPmTvamLl~N  271 (283)
T COG0190         253 ITPVPGGVGPMTVAMLLEN  271 (283)
T ss_pred             cCCCCCccCHHHHHHHHHH
Confidence            7887778766554433333

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.57  E-value=0.00036  Score=66.83  Aligned_cols=81  Identities=19%  Similarity=0.319  Sum_probs=66.4

Q ss_pred             cccccCceEEEEecC-chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490          172 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  250 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG-~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  250 (370)
                      +.+++||++.|||-+ .+|+++|..|...|+.|..+....                              .++.+..++|
T Consensus       152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T------------------------------~nl~~~~~~A  201 (282)
T PRK14182        152 RVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT------------------------------ADLAGEVGRA  201 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------------------------CCHHHHHhhC
Confidence            357899999999975 679999999998899999875421                              3678889999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcc
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL  289 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~  289 (370)
                      |+|+.+++-    .+++..++   .|+|+++||+|--..
T Consensus       202 DIvI~AvGk----~~~i~~~~---ik~gaiVIDvGin~~  233 (282)
T PRK14182        202 DILVAAIGK----AELVKGAW---VKEGAVVIDVGMNRL  233 (282)
T ss_pred             CEEEEecCC----cCccCHHH---cCCCCEEEEeeceec
Confidence            999999873    45788776   589999999986553

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.56  E-value=0.00033  Score=68.97  Aligned_cols=130  Identities=19%  Similarity=0.274  Sum_probs=86.8

Q ss_pred             cccccCceEEEEecC-chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490          172 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  250 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG-~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  250 (370)
                      +.++.||++.|||-+ .+|+++|..|...|+.|..+...                              ..++.+..++|
T Consensus       226 ~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~------------------------------T~nl~~~~r~A  275 (364)
T PLN02616        226 NVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR------------------------------TKNPEEITREA  275 (364)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCC------------------------------CCCHHHHHhhC
Confidence            467999999999975 67999999999999999987532                              13688889999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceE
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL  330 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi  330 (370)
                      |||+.++.-    .+++..++   .|+|+++||+|--.+-+..     =++|.  ...-||-..+-.       + ---.
T Consensus       276 DIVIsAvGk----p~~i~~d~---vK~GAvVIDVGIn~~~~~~-----~~~g~--klvGDVdfe~v~-------~-~as~  333 (364)
T PLN02616        276 DIIISAVGQ----PNMVRGSW---IKPGAVVIDVGINPVEDAS-----SPRGY--RLVGDVCYEEAC-------K-VASA  333 (364)
T ss_pred             CEEEEcCCC----cCcCCHHH---cCCCCEEEecccccccccc-----ccCCC--eEEecCcHHHHH-------h-hccc
Confidence            999999873    35788776   5899999999855431100     01121  245577433211       0 1134


Q ss_pred             EccCCCCccHHHHHHHHHHHHHH
Q 017490          331 ITPHVGGVTEHSYRSMAKVVGDV  353 (370)
Q Consensus       331 lTPHia~~t~~~~~~~~~~~~~n  353 (370)
                      +||-=||.-+-+..-+.+.+++.
T Consensus       334 ITPVPGGVGpmTva~Ll~N~~~a  356 (364)
T PLN02616        334 VTPVPGGVGPMTIAMLLSNTLTS  356 (364)
T ss_pred             cCCCCCchHHHHHHHHHHHHHHH
Confidence            78877887655544444444433

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.56  E-value=0.00022  Score=67.98  Aligned_cols=112  Identities=13%  Similarity=0.125  Sum_probs=73.1

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHH-HHhcCC
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFE-FASKAD  251 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~e-ll~~aD  251 (370)
                      ..+++++|+|.|.+|++++..+...|++|.+++|+..+...-.              +.....+  ...++++ .+.++|
T Consensus       115 ~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la--------------~~~~~~~~~~~~~~~~~~~~~~D  180 (270)
T TIGR00507       115 RPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELA--------------ERFQRYGEIQAFSMDELPLHRVD  180 (270)
T ss_pred             ccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH--------------HHHhhcCceEEechhhhcccCcc
Confidence            5688999999999999999999999999999998754321000              0000000  0112333 235799


Q ss_pred             EEEEeccCC--hhhhc-ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          252 VVVCCLSLN--KQTAG-IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       252 iV~l~lP~t--~~t~~-li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      +|+.++|..  +.... .++   .+.++++.+++|+...+...  .|.+..++..+.
T Consensus       181 ivInatp~gm~~~~~~~~~~---~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~~  232 (270)
T TIGR00507       181 LIINATSAGMSGNIDEPPVP---AEKLKEGMVVYDMVYNPGET--PFLAEAKSLGTK  232 (270)
T ss_pred             EEEECCCCCCCCCCCCCCCC---HHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCe
Confidence            999999974  22211 222   34578999999998876533  477776666554

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.56  E-value=0.00033  Score=68.59  Aligned_cols=132  Identities=23%  Similarity=0.341  Sum_probs=87.6

Q ss_pred             cccccCceEEEEecC-chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490          172 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  250 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG-~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  250 (370)
                      +.+++||++.|||-+ .+|+++|..|...|+.|..+....                              .++++..++|
T Consensus       209 ~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T------------------------------~nl~~~~~~A  258 (345)
T PLN02897        209 GVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT------------------------------KDPEQITRKA  258 (345)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC------------------------------CCHHHHHhhC
Confidence            467999999999985 579999999999999998875321                              3578889999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceE
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL  330 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi  330 (370)
                      |||+.++.-    .+++..++   +|+|+++||+|--.+-+...     ++|.  ...-||..++-.+        ---.
T Consensus       259 DIvIsAvGk----p~~v~~d~---vk~GavVIDVGin~~~~~~~-----~~g~--klvGDVdfe~v~~--------~as~  316 (345)
T PLN02897        259 DIVIAAAGI----PNLVRGSW---LKPGAVVIDVGTTPVEDSSC-----EFGY--RLVGDVCYEEALG--------VASA  316 (345)
T ss_pred             CEEEEccCC----cCccCHHH---cCCCCEEEEccccccccccc-----cCCC--eeEecccHHHHHh--------hccc
Confidence            999999874    35788776   58999999998654311000     1131  2456775333211        1135


Q ss_pred             EccCCCCccHHHHHHHHHHHHHHHH
Q 017490          331 ITPHVGGVTEHSYRSMAKVVGDVAL  355 (370)
Q Consensus       331 lTPHia~~t~~~~~~~~~~~~~ni~  355 (370)
                      +||-=||.-+-+..-+.+.+++..+
T Consensus       317 iTPVPGGVGpmTvamLm~N~~~a~~  341 (345)
T PLN02897        317 ITPVPGGVGPMTITMLLCNTLDAAK  341 (345)
T ss_pred             cCCCCCchhHHHHHHHHHHHHHHHH
Confidence            7887677655444444444444333

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.55  E-value=0.00041  Score=66.56  Aligned_cols=80  Identities=18%  Similarity=0.326  Sum_probs=65.2

Q ss_pred             cccccCceEEEEecC-chhHHHHHHhccC----CCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHH
Q 017490          172 GETLLGKTVFILGFG-NIGVELAKRLRPF----GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF  246 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG-~IG~~vA~~l~~~----G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  246 (370)
                      +.++.||++.|||-+ .+|+++|..|...    ++.|..+...                              ..++.+.
T Consensus       148 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~------------------------------T~~l~~~  197 (287)
T PRK14181        148 EIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ------------------------------SENLTEI  197 (287)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC------------------------------CCCHHHH
Confidence            457999999999985 5799999999887    7888876532                              1368889


Q ss_pred             HhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490          247 ASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       247 l~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~  288 (370)
                      +++||+|+.+++-.    +++..++   +|+|+++||+|--.
T Consensus       198 ~~~ADIvV~AvG~p----~~i~~~~---ik~GavVIDvGin~  232 (287)
T PRK14181        198 LKTADIIIAAIGVP----LFIKEEM---IAEKAVIVDVGTSR  232 (287)
T ss_pred             HhhCCEEEEccCCc----CccCHHH---cCCCCEEEEecccc
Confidence            99999999998743    5788776   58999999998655

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=97.54  E-value=0.00015  Score=71.09  Aligned_cols=102  Identities=17%  Similarity=0.241  Sum_probs=61.8

Q ss_pred             EEEEecCchhHHHHHHhc-cCCCEEEEEcCCCccccccccccchhhhcccccc--ccccccC--CCCCHHHHHhcCCEEE
Q 017490          180 VFILGFGNIGVELAKRLR-PFGVKIIATKRSWASHSQVSCQSSALAVKNGIID--DLVDEKG--CHEDIFEFASKADVVV  254 (370)
Q Consensus       180 vGIiGlG~IG~~vA~~l~-~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~l~ell~~aDiV~  254 (370)
                      |||+|+|.||+.+++.+. .-+++|+++................|..-.....  ....+.+  ...++++++.++|+|+
T Consensus         1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv   80 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV   80 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence            699999999999999875 4578888765421110000000000000000000  0001111  1346899999999999


Q ss_pred             EeccCChhhhcccCHHHHhcCCCCcEEEEc
Q 017490          255 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNI  284 (370)
Q Consensus       255 l~lP~t~~t~~li~~~~l~~mk~gailIN~  284 (370)
                      .|.   +.+.+..+++.+.+|+++++|+-.
T Consensus        81 e~T---p~~~~~~na~~~~~~GakaVl~~~  107 (333)
T TIGR01546        81 DAT---PGGIGAKNKPLYEKAGVKAIFQGG  107 (333)
T ss_pred             ECC---CCCCChhhHHHHHhCCcCEEEECC
Confidence            985   456778899999999999988854

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.53  E-value=0.00038  Score=67.20  Aligned_cols=80  Identities=14%  Similarity=0.316  Sum_probs=64.6

Q ss_pred             cccccCceEEEEecC-chhHHHHHHhcc----CCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHH
Q 017490          172 GETLLGKTVFILGFG-NIGVELAKRLRP----FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF  246 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG-~IG~~vA~~l~~----~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  246 (370)
                      +.++.||++.|||-+ .+|+++|..|..    .|+.|.......                              .++++.
T Consensus       154 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t------------------------------~~l~~~  203 (295)
T PRK14174        154 NIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT------------------------------KDIPSY  203 (295)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc------------------------------hhHHHH
Confidence            357999999999985 679999999876    588888765321                              358889


Q ss_pred             HhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490          247 ASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       247 l~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~  288 (370)
                      +++||+|+.+++..    ++|.++++   |+|+++||+|-..
T Consensus       204 ~~~ADIvI~Avg~~----~li~~~~v---k~GavVIDVgi~~  238 (295)
T PRK14174        204 TRQADILIAAIGKA----RFITADMV---KPGAVVIDVGINR  238 (295)
T ss_pred             HHhCCEEEEecCcc----CccCHHHc---CCCCEEEEeeccc
Confidence            99999999998633    67888876   9999999998544

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.52  E-value=0.00039  Score=66.73  Aligned_cols=80  Identities=20%  Similarity=0.312  Sum_probs=65.3

Q ss_pred             cccccCceEEEEecC-chhHHHHHHhcc----CCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHH
Q 017490          172 GETLLGKTVFILGFG-NIGVELAKRLRP----FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF  246 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG-~IG~~vA~~l~~----~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  246 (370)
                      +.++.||++.|||-+ .+|+++|..|..    .|++|..+..+.                              .++.+.
T Consensus       152 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t------------------------------~~l~~~  201 (286)
T PRK14184        152 GLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT------------------------------PDLAEE  201 (286)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc------------------------------hhHHHH
Confidence            457899999999985 679999999987    789998875321                              368889


Q ss_pred             HhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490          247 ASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       247 l~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~  288 (370)
                      +++||+|+.+++    ..+++.++++   |+|+++||+|--.
T Consensus       202 ~~~ADIVI~AvG----~p~li~~~~v---k~GavVIDVGi~~  236 (286)
T PRK14184        202 CREADFLFVAIG----RPRFVTADMV---KPGAVVVDVGINR  236 (286)
T ss_pred             HHhCCEEEEecC----CCCcCCHHHc---CCCCEEEEeeeec
Confidence            999999999985    3457888776   9999999998443

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=97.50  E-value=0.00031  Score=66.60  Aligned_cols=127  Identities=20%  Similarity=0.291  Sum_probs=69.6

Q ss_pred             HHHHhccCC--CEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCH
Q 017490          192 LAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNK  269 (370)
Q Consensus       192 vA~~l~~~G--~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~  269 (370)
                      +|+.|+..|  .+|+++|+++......        ...    +..+.  ...+ .+.++++|+|++|+|.. .+..++ +
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a--------~~~----g~~~~--~~~~-~~~~~~~DlvvlavP~~-~~~~~l-~   63 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAA--------LEL----GIIDE--ASTD-IEAVEDADLVVLAVPVS-AIEDVL-E   63 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHH--------HHT----TSSSE--EESH-HHHGGCCSEEEE-S-HH-HHHHHH-H
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHH--------HHC----CCeee--ccCC-HhHhcCCCEEEEcCCHH-HHHHHH-H
Confidence            466777666  7999999876542110        000    01110  1122 56789999999999954 455554 3


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEe-cCCCC---CCCCCCcccCCCceEEccCCC
Q 017490          270 SFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGID-VAWTE---PFDPNDPILKFKNVLITPHVG  336 (370)
Q Consensus       270 ~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lD-V~~~E---Pl~~~~pL~~~~nvilTPHia  336 (370)
                      +....+++|+++++++.-..--.+++.+.+. ......+.= -|.+|   |...+..|+.-.++++||+-.
T Consensus        64 ~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~-~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~  133 (258)
T PF02153_consen   64 EIAPYLKPGAIVTDVGSVKAPIVEAMERLLP-EGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGED  133 (258)
T ss_dssp             HHHCGS-TTSEEEE--S-CHHHHHHHHHHHT-SSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTT
T ss_pred             HhhhhcCCCcEEEEeCCCCHHHHHHHHHhcC-cccceeecCCCCCCccccchhhcccccCCCeEEEeCCCC
Confidence            4556699999999998876544555555555 222222211 12222   222355788888999999855

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=97.50  E-value=0.00017  Score=70.70  Aligned_cols=90  Identities=14%  Similarity=0.128  Sum_probs=63.4

Q ss_pred             CceEEEEecCchhHHHHHHhcc--CCCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHHhcC
Q 017490          177 GKTVFILGFGNIGVELAKRLRP--FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKA  250 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~--~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~a  250 (370)
                      -+++||||+|.+|+..++.+..  ...+|.+|||+..+...       +.       +...+.+    ...+.++++++|
T Consensus       128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~-------~~-------~~~~~~g~~v~~~~~~~eav~~a  193 (325)
T TIGR02371       128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREK-------FA-------LRASDYEVPVRAATDPREAVEGC  193 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHH-------HH-------HHHHhhCCcEEEeCCHHHHhccC
Confidence            4789999999999997766543  24589999998765211       00       0000111    246899999999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                      |+|++|+|.   ...++..+.   +|||+.+..+|.
T Consensus       194 DiVitaT~s---~~P~~~~~~---l~~g~~v~~vGs  223 (325)
T TIGR02371       194 DILVTTTPS---RKPVVKADW---VSEGTHINAIGA  223 (325)
T ss_pred             CEEEEecCC---CCcEecHHH---cCCCCEEEecCC
Confidence            999999774   456776654   599999999984

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=97.45  E-value=0.00034  Score=68.71  Aligned_cols=92  Identities=13%  Similarity=0.170  Sum_probs=61.7

Q ss_pred             cccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCE
Q 017490          174 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  252 (370)
Q Consensus       174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  252 (370)
                      .+.|+++.|||.|.||+.+|+.|...|. +|++.+|+....+        |       .+.      ....-+++.++|+
T Consensus       171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~--------~-------~~~------~~~~~~~~~~~Dv  229 (338)
T PRK00676        171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLP--------Y-------RTV------VREELSFQDPYDV  229 (338)
T ss_pred             CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccc--------h-------hhh------hhhhhhcccCCCE
Confidence            5899999999999999999999999996 6999999864310        0       000      0011144578999


Q ss_pred             EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCC
Q 017490          253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg  287 (370)
                      |+.+...|.....++..+.++..++ -++||.|=.
T Consensus       230 VIs~t~~Tas~~p~i~~~~~~~~~~-r~~iDLAvP  263 (338)
T PRK00676        230 IFFGSSESAYAFPHLSWESLADIPD-RIVFDFNVP  263 (338)
T ss_pred             EEEcCCcCCCCCceeeHHHHhhccC-cEEEEecCC
Confidence            9987433444445667666654332 367776544

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.45  E-value=0.00031  Score=64.23  Aligned_cols=111  Identities=24%  Similarity=0.293  Sum_probs=70.2

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCC---Cccccccccccchh------------hhcccccc-cccc
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS---WASHSQVSCQSSAL------------AVKNGIID-DLVD  235 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~---~~~~~~~~~~~~~~------------~~~~~~~~-~~~~  235 (370)
                      ..|..++|+|+|+|.+|..+|+.|...|. ++..+|++   ............+.            ...+.... +...
T Consensus        17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~   96 (200)
T TIGR02354        17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD   96 (200)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence            46888999999999999999999999999 69999987   21110000000000            00000000 0000


Q ss_pred             ccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEc
Q 017490          236 EKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNI  284 (370)
Q Consensus       236 ~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~  284 (370)
                      .....+++++++.++|+|+-| ..+.+++.++.......++...++...
T Consensus        97 ~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~~  144 (200)
T TIGR02354        97 EKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAAS  144 (200)
T ss_pred             eeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEEe
Confidence            000123456678899999998 578889998888888888876666643

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.45  E-value=0.00064  Score=65.60  Aligned_cols=134  Identities=16%  Similarity=0.261  Sum_probs=87.1

Q ss_pred             cccccCceEEEEec-CchhHHHHHHhccC----CCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHH
Q 017490          172 GETLLGKTVFILGF-GNIGVELAKRLRPF----GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF  246 (370)
Q Consensus       172 ~~~l~g~tvGIiGl-G~IG~~vA~~l~~~----G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  246 (370)
                      +.++.||++.|||- ..+|+++|..|...    ++.|..+...                              ..++.+.
T Consensus       156 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~------------------------------T~~l~~~  205 (297)
T PRK14168        156 GVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR------------------------------SKNLARH  205 (297)
T ss_pred             CCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC------------------------------CcCHHHH
Confidence            56899999999997 56899999999876    7888886432                              1367888


Q ss_pred             HhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCC
Q 017490          247 ASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKF  326 (370)
Q Consensus       247 l~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~  326 (370)
                      .++||+|+.++.-    .+++..++   +|+|+++||+|.-.+.+.      ..+|+.. ..-||-..+       ..+.
T Consensus       206 ~~~ADIvVsAvGk----p~~i~~~~---ik~gavVIDvGin~~~~~------~~~g~~~-~~GDVdfe~-------v~~~  264 (297)
T PRK14168        206 CQRADILIVAAGV----PNLVKPEW---IKPGATVIDVGVNRVGTN------ESTGKAI-LSGDVDFDA-------VKEI  264 (297)
T ss_pred             HhhCCEEEEecCC----cCccCHHH---cCCCCEEEecCCCccCcc------ccCCCcc-eeccccHHH-------HHhh
Confidence            9999999999863    35788776   589999999986553211      1223310 234553211       1111


Q ss_pred             CceEEccCCCCccHHHHHHHHHHHHHHHHHH
Q 017490          327 KNVLITPHVGGVTEHSYRSMAKVVGDVALQL  357 (370)
Q Consensus       327 ~nvilTPHia~~t~~~~~~~~~~~~~ni~~~  357 (370)
                       --.+||--||.-+-+...+.+.+++..+++
T Consensus       265 -a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~  294 (297)
T PRK14168        265 -AGKITPVPGGVGPMTIAMLMRNTLKSAKFH  294 (297)
T ss_pred             -ccEecCCCCCchHHHHHHHHHHHHHHHHHH
Confidence             135789767765555444455555444443

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.43  E-value=0.00071  Score=65.17  Aligned_cols=80  Identities=15%  Similarity=0.299  Sum_probs=64.1

Q ss_pred             cccccCceEEEEecC-chhHHHHHHhccC----CCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHH
Q 017490          172 GETLLGKTVFILGFG-NIGVELAKRLRPF----GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF  246 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG-~IG~~vA~~l~~~----G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  246 (370)
                      +.++.||++.|||-+ .+|+++|..|...    ++.|..+...                              ..++.+.
T Consensus       152 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~------------------------------T~nl~~~  201 (293)
T PRK14185        152 HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSR------------------------------SKNLKKE  201 (293)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCC------------------------------CCCHHHH
Confidence            357999999999985 6799999999876    6888886432                              1368888


Q ss_pred             HhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490          247 ASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       247 l~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~  288 (370)
                      .++||+|+.+++-.    +++..++   .|+|+++||+|--.
T Consensus       202 ~~~ADIvIsAvGkp----~~i~~~~---vk~gavVIDvGin~  236 (293)
T PRK14185        202 CLEADIIIAALGQP----EFVKADM---VKEGAVVIDVGTTR  236 (293)
T ss_pred             HhhCCEEEEccCCc----CccCHHH---cCCCCEEEEecCcc
Confidence            99999999998743    4687765   58999999998654

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=97.42  E-value=0.00036  Score=71.99  Aligned_cols=72  Identities=22%  Similarity=0.286  Sum_probs=51.4

Q ss_pred             cccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccccc----CCCCCHHHHH
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK----GCHEDIFEFA  247 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~ell  247 (370)
                      +..+.+++++|+|.|.+|+++++.+...|++|.+++|+..+..                 ++....    ....++.+ +
T Consensus       327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~-----------------~la~~~~~~~~~~~~~~~-l  388 (477)
T PRK09310        327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAE-----------------ALASRCQGKAFPLESLPE-L  388 (477)
T ss_pred             CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-----------------HHHHHhccceechhHhcc-c
Confidence            4567899999999999999999999999999999998754311                 111111    01122222 5


Q ss_pred             hcCCEEEEeccCCh
Q 017490          248 SKADVVVCCLSLNK  261 (370)
Q Consensus       248 ~~aDiV~l~lP~t~  261 (370)
                      .++|+|++|+|...
T Consensus       389 ~~~DiVInatP~g~  402 (477)
T PRK09310        389 HRIDIIINCLPPSV  402 (477)
T ss_pred             CCCCEEEEcCCCCC
Confidence            68999999999753

>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.41  E-value=0.0015  Score=63.73  Aligned_cols=162  Identities=15%  Similarity=0.246  Sum_probs=117.9

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccc--ccCCCCCHHHHH---hcCCE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD--EKGCHEDIFEFA---SKADV  252 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell---~~aDi  252 (370)
                      ..+|+||++.||+.++-.....|+.|.+|+|+.++-..       +      +....+  ......+++++.   +.--+
T Consensus         7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~-------f------laneak~~~i~ga~S~ed~v~klk~PR~   73 (487)
T KOG2653|consen    7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDE-------F------LANEAKGTKIIGAYSLEDFVSKLKKPRV   73 (487)
T ss_pred             cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHH-------H------HHHhhcCCcccCCCCHHHHHHhcCCCcE
Confidence            46899999999999999999999999999998765200       0      000111  111446777764   56788


Q ss_pred             EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceEEc
Q 017490          253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLIT  332 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilT  332 (370)
                      |++.+-.-.....+|. +....|.+|-++|+-+....-|+..-.+.|....|-..+.-|...|--.-..|-+       .
T Consensus        74 iillvkAG~pVD~~I~-~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPSl-------M  145 (487)
T KOG2653|consen   74 IILLVKAGAPVDQFIE-ELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPSL-------M  145 (487)
T ss_pred             EEEEeeCCCcHHHHHH-HHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCcc-------C
Confidence            8888776655666654 6778899999999999999999999999999999999999998877532222321       2


Q ss_pred             cCCCCccHHHHHHHHHHHHHHHHHHHcCCCC
Q 017490          333 PHVGGVTEHSYRSMAKVVGDVALQLHAGTPL  363 (370)
Q Consensus       333 PHia~~t~~~~~~~~~~~~~ni~~~~~g~~~  363 (370)
                      |   |-+.+++..+-.++.+-.-...+|+|-
T Consensus       146 p---Gg~~~Awp~ik~ifq~iaakv~~~epC  173 (487)
T KOG2653|consen  146 P---GGSKEAWPHIKDIFQKIAAKVSDGEPC  173 (487)
T ss_pred             C---CCChHHHHHHHHHHHHHHHHhcCCCCC
Confidence            3   667788888777766655555566664

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=97.35  E-value=0.0027  Score=59.20  Aligned_cols=124  Identities=19%  Similarity=0.171  Sum_probs=72.5

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccc----cccccchhhhccccccccccccCCCCCHHHHH-
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQ----VSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA-  247 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-  247 (370)
                      .++.|++|.|.|+|++|+.+|+.|..+|++|+++..+......    .......+....+.+.... . ....+.++++ 
T Consensus        27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~-~-~~~~~~~~i~~  104 (227)
T cd01076          27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFP-G-AERITNEELLE  104 (227)
T ss_pred             CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCC-C-ceecCCcccee
Confidence            5689999999999999999999999999999954332111000    0000000000011000000 0 0011223332 


Q ss_pred             hcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceE
Q 017490          248 SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGG  306 (370)
Q Consensus       248 ~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~g  306 (370)
                      .+||+++-|.+     .+.++.+...+++ =.+++-.+.+++ . ....+.|+++.+..
T Consensus       105 ~~~Dvlip~a~-----~~~i~~~~~~~l~-a~~I~egAN~~~-t-~~a~~~L~~rGi~~  155 (227)
T cd01076         105 LDCDILIPAAL-----ENQITADNADRIK-AKIIVEAANGPT-T-PEADEILHERGVLV  155 (227)
T ss_pred             ecccEEEecCc-----cCccCHHHHhhce-eeEEEeCCCCCC-C-HHHHHHHHHCCCEE
Confidence            37899988754     3467888888886 345556666666 4 66678888888863

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.35  E-value=0.001  Score=64.20  Aligned_cols=80  Identities=18%  Similarity=0.349  Sum_probs=63.9

Q ss_pred             cccccCceEEEEecC-chhHHHHHHhccC----CCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHH
Q 017490          172 GETLLGKTVFILGFG-NIGVELAKRLRPF----GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF  246 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG-~IG~~vA~~l~~~----G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  246 (370)
                      +.+++||++.|||-+ .+|+++|..|...    ++.|..+...                              ..++.+.
T Consensus       152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~------------------------------T~~l~~~  201 (297)
T PRK14167        152 GVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSR------------------------------TDDLAAK  201 (297)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCC------------------------------CCCHHHH
Confidence            457999999999985 6799999999765    7899886432                              1368888


Q ss_pred             HhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490          247 ASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       247 l~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~  288 (370)
                      .++||+|+.++.-    .+++..++   +|+|+++||+|--.
T Consensus       202 ~~~ADIvIsAvGk----p~~i~~~~---ik~gaiVIDvGin~  236 (297)
T PRK14167        202 TRRADIVVAAAGV----PELIDGSM---LSEGATVIDVGINR  236 (297)
T ss_pred             HhhCCEEEEccCC----cCccCHHH---cCCCCEEEEccccc
Confidence            9999999998763    34788766   58999999998554

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.25  E-value=0.00065  Score=67.88  Aligned_cols=114  Identities=15%  Similarity=0.221  Sum_probs=71.7

Q ss_pred             ceEEEEecCchhHHHHHHhccCC-CEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEe
Q 017490          178 KTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  256 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  256 (370)
                      ++|.|||+|.||+.+|..|.+.| .+|++.||+..+.......     . .+.+....-.......+.+++++.|+|+.+
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~-----~-~~~v~~~~vD~~d~~al~~li~~~d~VIn~   75 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAEL-----I-GGKVEALQVDAADVDALVALIKDFDLVINA   75 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhh-----c-cccceeEEecccChHHHHHHHhcCCEEEEe
Confidence            57899999999999999999888 8999999986542111000     0 000000000111234678899999999999


Q ss_pred             ccCChhhhcccCHHHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 017490          257 LSLNKQTAGIVNKSFL-SSMKKGSLLVNIARGGLLDYEAIAHYLECGHL  304 (370)
Q Consensus       257 lP~t~~t~~li~~~~l-~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i  304 (370)
                      +|..      ++...+ +.++.|.-.+++|-.+.-- .++-+..++..+
T Consensus        76 ~p~~------~~~~i~ka~i~~gv~yvDts~~~~~~-~~~~~~a~~Agi  117 (389)
T COG1748          76 APPF------VDLTILKACIKTGVDYVDTSYYEEPP-WKLDEEAKKAGI  117 (389)
T ss_pred             CCch------hhHHHHHHHHHhCCCEEEcccCCchh-hhhhHHHHHcCe
Confidence            9965      233444 4567788888887665432 444444444443

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.23  E-value=0.00047  Score=67.60  Aligned_cols=95  Identities=14%  Similarity=0.183  Sum_probs=63.6

Q ss_pred             cCceEEEEecCchhHHHHHHhc-cCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEE
Q 017490          176 LGKTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  253 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~-~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  253 (370)
                      ..++++|||.|.+|+..++.+. ..++ +|.+++|++++...-..   .+.      .....+...+.+++++++++|+|
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~---~~~------~~~~~~~~~~~~~~~~~~~aDiV  196 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQ---EIQ------SKFNTEIYVVNSADEAIEEADII  196 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHH---HHH------HhcCCcEEEeCCHHHHHhcCCEE
Confidence            4678999999999999887764 4565 69999998655211000   000      00000001246789999999999


Q ss_pred             EEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       254 ~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                      +++.|..   ..++.    +.+|+|+.++.++.
T Consensus       197 i~aT~s~---~p~i~----~~l~~G~hV~~iGs  222 (325)
T PRK08618        197 VTVTNAK---TPVFS----EKLKKGVHINAVGS  222 (325)
T ss_pred             EEccCCC---CcchH----HhcCCCcEEEecCC
Confidence            9998744   45665    34699999998865

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=97.22  E-value=0.0028  Score=61.69  Aligned_cols=121  Identities=20%  Similarity=0.141  Sum_probs=73.1

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccc-ccccCCCCCHHHHHhcCCEEEEe
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDL-VDEKGCHEDIFEFASKADVVVCC  256 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ell~~aDiV~l~  256 (370)
                      ++|+|||.|.||..+|.+|...|++|.++.|.....   .. ...+.... ...+. ........+. +.+..+|+|+++
T Consensus         6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~~~---~~-~~g~~~~~-~~~~~~~~~~~~~~~~-~~~~~~D~vila   79 (313)
T PRK06249          6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDYEA---VR-ENGLQVDS-VHGDFHLPPVQAYRSA-EDMPPCDWVLVG   79 (313)
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCHHH---HH-hCCeEEEe-CCCCeeecCceEEcch-hhcCCCCEEEEE
Confidence            589999999999999999999999999998864221   00 00000000 00000 0000001122 245789999999


Q ss_pred             ccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEE
Q 017490          257 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGL  307 (370)
Q Consensus       257 lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga  307 (370)
                      +|.. ++...+ +.....+++++.++....| +-.++.|.+.+...++.++
T Consensus        80 vK~~-~~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g  127 (313)
T PRK06249         80 LKTT-ANALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGG  127 (313)
T ss_pred             ecCC-ChHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEE
Confidence            9954 333332 2333446788888888766 4466777778776676554

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=97.22  E-value=0.00062  Score=66.82  Aligned_cols=96  Identities=17%  Similarity=0.115  Sum_probs=64.9

Q ss_pred             cCceEEEEecCchhHHHHHHhc-cCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEE
Q 017490          176 LGKTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  253 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~-~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  253 (370)
                      ..++++|||.|.+|+..++.+. ..+. +|.+|+|+..+...-..   .+.      .....+.....++++.+.+||+|
T Consensus       128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~---~~~------~~~g~~v~~~~~~~~av~~aDiV  198 (326)
T TIGR02992       128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALAL---QLS------SLLGIDVTAATDPRAAMSGADII  198 (326)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHH---HHH------hhcCceEEEeCCHHHHhccCCEE
Confidence            3579999999999999999886 4675 69999998765211000   000      00000011246788999999999


Q ss_pred             EEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       254 ~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                      +++.|.   ...++..+.   +|+|+.+..++.
T Consensus       199 vtaT~s---~~p~i~~~~---l~~g~~i~~vg~  225 (326)
T TIGR02992       199 VTTTPS---ETPILHAEW---LEPGQHVTAMGS  225 (326)
T ss_pred             EEecCC---CCcEecHHH---cCCCcEEEeeCC
Confidence            999775   345777654   689998887763

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=97.21  E-value=0.0036  Score=59.28  Aligned_cols=127  Identities=15%  Similarity=0.049  Sum_probs=74.8

Q ss_pred             cccccCceEEEEecCchhHHHHHHhccCCCEEEEE-cCCCccccc-cccc--c---chhhhcccc-cccccccc--CCCC
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT-KRSWASHSQ-VSCQ--S---SALAVKNGI-IDDLVDEK--GCHE  241 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~-dr~~~~~~~-~~~~--~---~~~~~~~~~-~~~~~~~~--~~~~  241 (370)
                      +.+++|+||.|-|+|++|+.+|+.|..+|++|+++ |.+..-..+ -.+.  .   .++....+. +.......  ....
T Consensus        33 ~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~  112 (254)
T cd05313          33 NETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF  112 (254)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe
Confidence            36789999999999999999999999999999954 422110000 0000  0   000000000 00010000  0111


Q ss_pred             CHHHHH-hcCCEEEEeccCChhhhcccCHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          242 DIFEFA-SKADVVVCCLSLNKQTAGIVNKSFLSSMK--KGSLLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       242 ~l~ell-~~aDiV~l~lP~t~~t~~li~~~~l~~mk--~gailIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      +.++++ .+|||++-|     .+.+.|+.+..++++  .=.+++-.+.+++-.  +-.+.|.++.+.
T Consensus       113 ~~~~~~~~~~DIliPc-----Al~~~I~~~na~~i~~~~ak~I~EgAN~p~t~--~a~~~L~~rGI~  172 (254)
T cd05313         113 EGKKPWEVPCDIAFPC-----ATQNEVDAEDAKLLVKNGCKYVAEGANMPCTA--EAIEVFRQAGVL  172 (254)
T ss_pred             CCcchhcCCCcEEEec-----cccccCCHHHHHHHHHcCCEEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence            333433 489999877     467889998888874  345666777777644  566788888776

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.20  E-value=0.00073  Score=65.84  Aligned_cols=108  Identities=17%  Similarity=0.191  Sum_probs=69.9

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccc--ccccccCCCCCHHHHHhcCCEEEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIID--DLVDEKGCHEDIFEFASKADVVVC  255 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~ell~~aDiV~l  255 (370)
                      ++|+|+|.|.-|.++|+.|...|.+|..|.|+++.... ...   -+.....+.  .+........++.++++.||+|++
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~-i~~---~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~   77 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAE-INE---TRENPKYLPGILLPPNLKATTDLAEALDGADIIVI   77 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHH-HHh---cCcCccccCCccCCcccccccCHHHHHhcCCEEEE
Confidence            57999999999999999999999999999876432100 000   000000000  011111234689999999999999


Q ss_pred             eccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccC
Q 017490          256 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLD  291 (370)
Q Consensus       256 ~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd  291 (370)
                      .+|. ...+.++.. .-..+++++.+|+++-|=-.+
T Consensus        78 avPs-~~~r~v~~~-l~~~l~~~~~iv~~sKGie~~  111 (329)
T COG0240          78 AVPS-QALREVLRQ-LKPLLLKDAIIVSATKGLEPE  111 (329)
T ss_pred             ECCh-HHHHHHHHH-HhhhccCCCeEEEEeccccCC
Confidence            9993 344444322 224578999999999775443

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=97.19  E-value=0.0012  Score=71.49  Aligned_cols=132  Identities=19%  Similarity=0.171  Sum_probs=82.4

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccc-cchhh--hccccccc-----cccccCCCCCHHHHHhc
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSALA--VKNGIIDD-----LVDEKGCHEDIFEFASK  249 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~-~~~~~--~~~~~~~~-----~~~~~~~~~~l~ell~~  249 (370)
                      ++|+|||.|.||..+|..+...|++|+.||++.......... ...+.  ...+...+     .........++ +.++.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  392 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER  392 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence            589999999999999999999999999999886542110000 00000  00000000     00000012355 45799


Q ss_pred             CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCC
Q 017490          250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW  313 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~  313 (370)
                      ||+|+=++|-..+.+.-+-++.=+.++++++|-..  .+.+....|.+.+.. +-+.+++--|.
T Consensus       393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasN--TSsl~i~~la~~~~~-p~r~~g~Hff~  453 (715)
T PRK11730        393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASN--TSTISISLLAKALKR-PENFCGMHFFN  453 (715)
T ss_pred             CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEc--CCCCCHHHHHhhcCC-CccEEEEecCC
Confidence            99999999998887776666666778999888543  344566777777753 33445666554

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.18  E-value=0.001  Score=64.12  Aligned_cols=104  Identities=17%  Similarity=0.164  Sum_probs=62.3

Q ss_pred             cccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCE
Q 017490          174 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  252 (370)
Q Consensus       174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  252 (370)
                      .+.++++.|+|.|.+|++++..|...|+ +|.++||+..+...-..   .+....   ..  .......++.+.+.++|+
T Consensus       124 ~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~---~l~~~~---~~--~~~~~~~~~~~~~~~aDi  195 (284)
T PRK12549        124 DASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALAD---ELNARF---PA--ARATAGSDLAAALAAADG  195 (284)
T ss_pred             CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH---HHHhhC---CC--eEEEeccchHhhhCCCCE
Confidence            4678999999999999999999999998 79999998654211100   000000   00  000112345567788999


Q ss_pred             EEEeccCChh-hhc-ccCHHHHhcCCCCcEEEEcCCCc
Q 017490          253 VVCCLSLNKQ-TAG-IVNKSFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       253 V~l~lP~t~~-t~~-li~~~~l~~mk~gailIN~sRg~  288 (370)
                      |+.+.|.--. ... .++.   ..++++.+++|+.-.+
T Consensus       196 VInaTp~Gm~~~~~~~~~~---~~l~~~~~v~DivY~P  230 (284)
T PRK12549        196 LVHATPTGMAKHPGLPLPA---ELLRPGLWVADIVYFP  230 (284)
T ss_pred             EEECCcCCCCCCCCCCCCH---HHcCCCcEEEEeeeCC
Confidence            9999885311 101 1222   2345566666665444

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=97.17  E-value=0.00018  Score=65.83  Aligned_cols=44  Identities=30%  Similarity=0.459  Sum_probs=37.9

Q ss_pred             ccCCCCcccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCC
Q 017490          166 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  209 (370)
Q Consensus       166 ~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~  209 (370)
                      .|+......|.+++|.|+|+|.+|..+|+.|...|. ++..+|+.
T Consensus        10 ~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        10 DIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             hcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            355444567999999999999999999999999998 89999976

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PLN02477 glutamate dehydrogenase

Probab=97.15  E-value=0.015  Score=58.78  Aligned_cols=125  Identities=22%  Similarity=0.248  Sum_probs=75.1

Q ss_pred             cccccCceEEEEecCchhHHHHHHhccCCCEEEE-EcCCCcccc-cc--ccccchhhhccccccccccccCCCCCHHHH-
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA-TKRSWASHS-QV--SCQSSALAVKNGIIDDLVDEKGCHEDIFEF-  246 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~-~dr~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-  246 (370)
                      +.+++|++|.|.|+|++|+.+|+.|...|++|++ .|.+..-.. .-  .+....+...++.+.....  ....+.+++ 
T Consensus       201 g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~--a~~i~~~e~l  278 (410)
T PLN02477        201 GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPG--GDPIDPDDIL  278 (410)
T ss_pred             CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhcccc--ceEecCccce
Confidence            4578999999999999999999999999999994 444311000 00  0000000000110000000  011122333 


Q ss_pred             HhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceE
Q 017490          247 ASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGG  306 (370)
Q Consensus       247 l~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~g  306 (370)
                      ...|||++-|.     ..+.|+++...+++ =.+++-.+.+++  +.+-.+.|++..|..
T Consensus       279 ~~~~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~--t~ea~~~L~~rGI~~  330 (410)
T PLN02477        279 VEPCDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT--DPEADEILRKKGVVV  330 (410)
T ss_pred             eccccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC--CHHHHHHHHHCCcEE
Confidence            34899888663     56678888888875 457777888887  334568888888763

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.13  E-value=0.00078  Score=66.08  Aligned_cols=90  Identities=21%  Similarity=0.302  Sum_probs=58.7

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccc-ccccCC---CCCHHHHHhcCC
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDL-VDEKGC---HEDIFEFASKAD  251 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~l~ell~~aD  251 (370)
                      .|++|+|+|+|.+|....+.++++|++|+++|++.++.....              ++ ++....   ...++.+-+.+|
T Consensus       166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~--------------~lGAd~~i~~~~~~~~~~~~~~~d  231 (339)
T COG1064         166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAK--------------KLGADHVINSSDSDALEAVKEIAD  231 (339)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHH--------------HhCCcEEEEcCCchhhHHhHhhCc
Confidence            488999999999999999999999999999999876521111              11 111111   112233333488


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcC
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~s  285 (370)
                      +++.++| ....     ...++.+|+|..++-++
T Consensus       232 ~ii~tv~-~~~~-----~~~l~~l~~~G~~v~vG  259 (339)
T COG1064         232 AIIDTVG-PATL-----EPSLKALRRGGTLVLVG  259 (339)
T ss_pred             EEEECCC-hhhH-----HHHHHHHhcCCEEEEEC
Confidence            8888877 4331     24566677777776553

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.12  E-value=0.0041  Score=57.54  Aligned_cols=123  Identities=20%  Similarity=0.136  Sum_probs=69.7

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCCEEEE-EcCCCccccccccc--cchhhhccccccccccccCCCCCHHHHH-h
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA-TKRSWASHSQVSCQ--SSALAVKNGIIDDLVDEKGCHEDIFEFA-S  248 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~-~dr~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~ell-~  248 (370)
                      .++.|++|.|.|+|++|+.+|+.|...|.+|++ .|.+..-..+-.+.  ...+....+.+.. ... ....+-++++ .
T Consensus        19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~-~~~-~~~~~~~~l~~~   96 (217)
T cd05211          19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSAR-VKV-QDYFPGEAILGL   96 (217)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccc-cCc-ccccCcccceec
Confidence            468999999999999999999999999997655 55443000000000  0000000000000 000 0011112332 3


Q ss_pred             cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          249 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       249 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      +||+++-|.+.     +.|+.+....++ =.+++--+.+++-+  .-.+.|++..+.
T Consensus        97 ~~DVlipaA~~-----~~i~~~~a~~l~-a~~V~e~AN~p~t~--~a~~~L~~~Gi~  145 (217)
T cd05211          97 DVDIFAPCALG-----NVIDLENAKKLK-AKVVAEGANNPTTD--EALRILHERGIV  145 (217)
T ss_pred             cccEEeecccc-----CccChhhHhhcC-ccEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence            89999888653     377877777776 34566666777654  456777777664

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK06046 alanine dehydrogenase; Validated

Probab=97.12  E-value=0.00072  Score=66.36  Aligned_cols=90  Identities=23%  Similarity=0.320  Sum_probs=62.2

Q ss_pred             CceEEEEecCchhHHHHHHhcc-CCC-EEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHHhcC
Q 017490          177 GKTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKA  250 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~-~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~a  250 (370)
                      -++|||||+|.+|+..++.+.. .+. +|.+|||+......-.             .+.....+    ...+++++++ +
T Consensus       129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~-------------~~~~~~~~~~v~~~~~~~~~l~-a  194 (326)
T PRK06046        129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFV-------------ERMSSVVGCDVTVAEDIEEACD-C  194 (326)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHH-------------HHHHhhcCceEEEeCCHHHHhh-C
Confidence            4689999999999999988763 455 5788999865421100             00000001    2357888887 9


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                      |+|++|+|.   +..++..+.   +|+|+.+..++.
T Consensus       195 DiVv~aTps---~~P~~~~~~---l~~g~hV~~iGs  224 (326)
T PRK06046        195 DILVTTTPS---RKPVVKAEW---IKEGTHINAIGA  224 (326)
T ss_pred             CEEEEecCC---CCcEecHHH---cCCCCEEEecCC
Confidence            999999875   346777665   589999988873

>PRK09414 glutamate dehydrogenase; Provisional

Probab=97.10  E-value=0.0025  Score=64.92  Aligned_cols=127  Identities=15%  Similarity=0.110  Sum_probs=74.3

Q ss_pred             cccccCceEEEEecCchhHHHHHHhccCCCEEEEE-cCCCccccc-cccc--cchhhhcc-ccccccccccC-CCCCHHH
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT-KRSWASHSQ-VSCQ--SSALAVKN-GIIDDLVDEKG-CHEDIFE  245 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~-dr~~~~~~~-~~~~--~~~~~~~~-~~~~~~~~~~~-~~~~l~e  245 (370)
                      +.++.|++|.|.|+|++|+.+|+.|..+|++|+++ |.+..-..+ -.+.  ...+...+ +.+.......+ ...+.++
T Consensus       227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~  306 (445)
T PRK09414        227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGS  306 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCcc
Confidence            35789999999999999999999999999999987 532210000 0000  00000000 01111111101 1123344


Q ss_pred             HHh-cCCEEEEeccCChhhhcccCHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          246 FAS-KADVVVCCLSLNKQTAGIVNKSFLSSMK--KGSLLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       246 ll~-~aDiV~l~lP~t~~t~~li~~~~l~~mk--~gailIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      ++. +|||++-|.     +.+.|+.+....++  .=.+++-.+.+++  +.+-.+.|.++.|.
T Consensus       307 i~~~d~DVliPaA-----l~n~It~~~a~~i~~~~akiIvEgAN~p~--t~~A~~~L~~rGI~  362 (445)
T PRK09414        307 PWSVPCDIALPCA-----TQNELDEEDAKTLIANGVKAVAEGANMPS--TPEAIEVFLEAGVL  362 (445)
T ss_pred             ccccCCcEEEecC-----CcCcCCHHHHHHHHHcCCeEEEcCCCCCC--CHHHHHHHHHCCcE
Confidence            443 799998775     34578777666663  2346667777887  44466788888775

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=97.09  E-value=0.0025  Score=61.85  Aligned_cols=135  Identities=17%  Similarity=0.155  Sum_probs=81.5

Q ss_pred             CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccc-cchhh--hcccccccc-ccc-cC---CCCCHHHHHh
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSALA--VKNGIIDDL-VDE-KG---CHEDIFEFAS  248 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~-~~~~~--~~~~~~~~~-~~~-~~---~~~~l~ell~  248 (370)
                      -++|||||.|.||+.+|..+..-|++|..+|+++......... ...+.  +..+...+. ... ..   ...++. .++
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~   81 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK   81 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence            4789999999999999999988779999999984331110000 00000  000000000 000 00   112332 688


Q ss_pred             cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCC
Q 017490          249 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE  315 (370)
Q Consensus       249 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~E  315 (370)
                      +||+|+=.+|-+.+.+.-+-++.=+..||+++|=.  ..+-+.-.++.+++ ..+=+..++=.|.+-
T Consensus        82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlAS--NTSsl~it~ia~~~-~rper~iG~HFfNP~  145 (307)
T COG1250          82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILAS--NTSSLSITELAEAL-KRPERFIGLHFFNPV  145 (307)
T ss_pred             cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEee--ccCCCCHHHHHHHh-CCchhEEEEeccCCC
Confidence            99999999998888776555555566788988742  23335567777777 444445666666543

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=97.07  E-value=0.00062  Score=66.46  Aligned_cols=94  Identities=17%  Similarity=0.181  Sum_probs=55.1

Q ss_pred             ceEEEEecCchhHHHHHHhcc-CCC-EEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHHhcCC
Q 017490          178 KTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKAD  251 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~-~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~aD  251 (370)
                      +++||||.|..|+.-++.+.. ++. +|.+|+|++.+...-.             ..... .+    ...+.++.+++||
T Consensus       129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~-------------~~~~~-~~~~v~~~~~~~~av~~aD  194 (313)
T PF02423_consen  129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFA-------------ARLRD-LGVPVVAVDSAEEAVRGAD  194 (313)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHH-------------HHHHC-CCTCEEEESSHHHHHTTSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHH-------------Hhhcc-ccccceeccchhhhcccCC
Confidence            589999999999999887754 555 7999999865421100             01111 11    2468999999999


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcc
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL  289 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~  289 (370)
                      +|+.+.|.+..+ .+++.+.   +|||+.++.++....
T Consensus       195 ii~taT~s~~~~-P~~~~~~---l~~g~hi~~iGs~~~  228 (313)
T PF02423_consen  195 IIVTATPSTTPA-PVFDAEW---LKPGTHINAIGSYTP  228 (313)
T ss_dssp             EEEE----SSEE-ESB-GGG---S-TT-EEEE-S-SST
T ss_pred             EEEEccCCCCCC-ccccHHH---cCCCcEEEEecCCCC
Confidence            999997654322 6787664   689999999987544

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.06  E-value=0.00063  Score=67.14  Aligned_cols=104  Identities=21%  Similarity=0.209  Sum_probs=64.0

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccc---cccCCCCCHHHHHhcCCEEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV---DEKGCHEDIFEFASKADVVV  254 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~ell~~aDiV~  254 (370)
                      .+|+|||.|.+|..+|..|...| .|..|.+++.... ...   ..........+..   .......++++.++.+|+|+
T Consensus         8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~-~i~---~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVi   82 (341)
T PRK12439          8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETAD-DIN---DNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVV   82 (341)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHH-HHH---hcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEE
Confidence            57999999999999999999888 6777776543210 000   0000000000000   00012357778889999999


Q ss_pred             EeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490          255 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       255 l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~  288 (370)
                      +++| +..++..+. +.-..+++++.+|++.-|=
T Consensus        83 lavp-s~~~~~vl~-~i~~~l~~~~~vIsl~kGi  114 (341)
T PRK12439         83 MGVP-SHGFRGVLT-ELAKELRPWVPVVSLVKGL  114 (341)
T ss_pred             EEeC-HHHHHHHHH-HHHhhcCCCCEEEEEEeCC
Confidence            9999 344555443 3344578888899998863

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.06  E-value=0.00045  Score=56.19  Aligned_cols=88  Identities=23%  Similarity=0.317  Sum_probs=56.1

Q ss_pred             cccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEE
Q 017490          174 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  253 (370)
Q Consensus       174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  253 (370)
                      .++|++|.|||.|.+|..-++.|...|++|+++.+.... ...            . ..+.     ...+++.+..+|+|
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~-~~~------------~-i~~~-----~~~~~~~l~~~~lV   64 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEF-SEG------------L-IQLI-----RREFEEDLDGADLV   64 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHH-HHT------------S-CEEE-----ESS-GGGCTTESEE
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhh-hhh------------H-HHHH-----hhhHHHHHhhheEE
Confidence            589999999999999999999999999999999876310 000            0 0111     12334557889999


Q ss_pred             EEeccCChhhhcccCHHHHhcCCCCcEEEEcC
Q 017490          254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       254 ~l~lP~t~~t~~li~~~~l~~mk~gailIN~s  285 (370)
                      +.+.+.. +    +++......+.-.+++|++
T Consensus        65 ~~at~d~-~----~n~~i~~~a~~~~i~vn~~   91 (103)
T PF13241_consen   65 FAATDDP-E----LNEAIYADARARGILVNVV   91 (103)
T ss_dssp             EE-SS-H-H----HHHHHHHHHHHTTSEEEET
T ss_pred             EecCCCH-H----HHHHHHHHHhhCCEEEEEC
Confidence            8876532 3    3444555555556777775

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=97.04  E-value=0.00093  Score=65.71  Aligned_cols=67  Identities=28%  Similarity=0.311  Sum_probs=48.0

Q ss_pred             CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEEE
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVC  255 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l  255 (370)
                      ++||||||-|..|+.++..++.+|++|++.|+..........            +..+.... ..+.+.++.+.||+|.-
T Consensus         1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va------------~~~i~~~~dD~~al~ela~~~DViT~   68 (375)
T COG0026           1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVA------------DRVIVAAYDDPEALRELAAKCDVITY   68 (375)
T ss_pred             CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcc------------cceeecCCCCHHHHHHHHhhCCEEEE
Confidence            479999999999999999999999999999988765211110            11111111 22357788999999876

>PRK14031 glutamate dehydrogenase; Provisional

Probab=97.04  E-value=0.0038  Score=63.51  Aligned_cols=127  Identities=19%  Similarity=0.140  Sum_probs=72.4

Q ss_pred             cccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcccccc--cccc-c----hhhhc-cccccccccccC-CCCC
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQV--SCQS-S----ALAVK-NGIIDDLVDEKG-CHED  242 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--~~~~-~----~~~~~-~~~~~~~~~~~~-~~~~  242 (370)
                      +.+|.|++|.|.|+|++|+..|+.|..+|++|+++.........+  .+.. .    ++.-. ++.+.+.....+ ...+
T Consensus       223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~  302 (444)
T PRK14031        223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVE  302 (444)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcC
Confidence            457999999999999999999999999999999844322110000  0000 0    00000 011111111111 1112


Q ss_pred             HHHHH-hcCCEEEEeccCChhhhcccCHHHHhcCCC-Cc-EEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          243 IFEFA-SKADVVVCCLSLNKQTAGIVNKSFLSSMKK-GS-LLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       243 l~ell-~~aDiV~l~lP~t~~t~~li~~~~l~~mk~-ga-ilIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      .++++ ..|||++-|     .+.+.|+.+...+++. |. +++--+.| ++..++. +.|.+..|.
T Consensus       303 ~d~~~~~~cDIliPa-----Al~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~-~~L~~rgI~  361 (444)
T PRK14031        303 GARPWGEKGDIALPS-----ATQNELNGDDARQLVANGVIAVSEGANM-PSTPEAI-KVFQDAKIL  361 (444)
T ss_pred             CcccccCCCcEEeec-----ccccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHH-HHHHHCCcE
Confidence            33433 479988765     3677899888888865 44 45555566 5665554 555555554

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=97.04  E-value=0.0014  Score=64.80  Aligned_cols=108  Identities=18%  Similarity=0.155  Sum_probs=64.9

Q ss_pred             eEEEEecCchhHHHHHHhccCC--------CEEEEEcCCCccc-cccccccchhhhccccccc--cccccCCCCCHHHHH
Q 017490          179 TVFILGFGNIGVELAKRLRPFG--------VKIIATKRSWASH-SQVSCQSSALAVKNGIIDD--LVDEKGCHEDIFEFA  247 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G--------~~V~~~dr~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~ell  247 (370)
                      +|+|||.|+.|.++|..+...|        .+|..|.|...-. ......-+.-+.....+..  +........++++++
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal   80 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA   80 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence            5899999999999999998777        8999998732100 0000000000000000000  000001225789999


Q ss_pred             hcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490          248 SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       248 ~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~  288 (370)
                      +.||+|++++|. ...+.++ .+.-..++++..+|+++-|=
T Consensus        81 ~~ADiIIlAVPs-~~i~~vl-~~l~~~l~~~~~iVs~tKGi  119 (342)
T TIGR03376        81 KGADILVFVIPH-QFLEGIC-KQLKGHVKPNARAISCIKGL  119 (342)
T ss_pred             hcCCEEEEECCh-HHHHHHH-HHHHhhcCCCCEEEEEeCCc
Confidence            999999999994 3444443 23334578899999998773

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=97.03  E-value=0.0012  Score=60.76  Aligned_cols=94  Identities=26%  Similarity=0.283  Sum_probs=63.4

Q ss_pred             ceEEEEecCchhHHHHHHhccC--CC-EEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCCE
Q 017490          178 KTVFILGFGNIGVELAKRLRPF--GV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADV  252 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~--G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDi  252 (370)
                      .+|||||+|.||+.+.+.++.-  .+ .|.+||++.++..                 ++.....  ...++++++++.|+
T Consensus         1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~-----------------~~~~~~~~~~~s~ide~~~~~Dl   63 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAK-----------------ELEASVGRRCVSDIDELIAEVDL   63 (255)
T ss_pred             CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHH-----------------HHHhhcCCCccccHHHHhhccce
Confidence            3799999999999999998842  35 4889999876521                 1111222  23679999999999


Q ss_pred             EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHH
Q 017490          253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYE  293 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~  293 (370)
                      |+=|.. .+..+.+    ..+.+|.|-=+|=+|-|.+.|+.
T Consensus        64 vVEaAS-~~Av~e~----~~~~L~~g~d~iV~SVGALad~~   99 (255)
T COG1712          64 VVEAAS-PEAVREY----VPKILKAGIDVIVMSVGALADEG   99 (255)
T ss_pred             eeeeCC-HHHHHHH----hHHHHhcCCCEEEEechhccChH
Confidence            987754 2233322    23345667667777888888554

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=97.01  E-value=0.0023  Score=69.17  Aligned_cols=132  Identities=17%  Similarity=0.134  Sum_probs=80.7

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccc-cchhh--hcccccc-----ccccccCCCCCHHHHHhc
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSALA--VKNGIID-----DLVDEKGCHEDIFEFASK  249 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~-~~~~~--~~~~~~~-----~~~~~~~~~~~l~ell~~  249 (370)
                      ++|+|||.|.||..+|..+...|++|..+|++.......... ...+.  ...+...     ..........++ +.++.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  392 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN  392 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence            589999999999999999999999999999876542110000 00000  0000000     000000012344 45799


Q ss_pred             CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCC
Q 017490          250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW  313 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~  313 (370)
                      ||+|+=++|-..+.+.=+-++.=+.++|+++|-..  .+.++..+|...++. +-+..++=.|.
T Consensus       393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasn--TS~l~i~~ia~~~~~-p~r~ig~Hff~  453 (714)
T TIGR02437       393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASN--TSTISISLLAKALKR-PENFCGMHFFN  453 (714)
T ss_pred             CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEEC--CCCCCHHHHHhhcCC-cccEEEEecCC
Confidence            99999999988887765555666778999887543  344566777777753 33334555443

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.99  E-value=0.0013  Score=65.62  Aligned_cols=110  Identities=15%  Similarity=0.157  Sum_probs=64.6

Q ss_pred             ceEEEEecCchhHHHHHHhccCC-------CEEEEEcCCCcccc-ccccccchhhhcccccc--ccccccCCCCCHHHHH
Q 017490          178 KTVFILGFGNIGVELAKRLRPFG-------VKIIATKRSWASHS-QVSCQSSALAVKNGIID--DLVDEKGCHEDIFEFA  247 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G-------~~V~~~dr~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~ell  247 (370)
                      ++|+|||.|..|.++|..+...|       .+|..|.|+..-.. ...+.-+.-+.......  .+.+......++++++
T Consensus        12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav   91 (365)
T PTZ00345         12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAV   91 (365)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHH
Confidence            58999999999999999998665       78988877653100 00000000000000000  0111111235788999


Q ss_pred             hcCCEEEEeccCChhhhcccCHHHHh--cCCCCcEEEEcCCCcc
Q 017490          248 SKADVVVCCLSLNKQTAGIVNKSFLS--SMKKGSLLVNIARGGL  289 (370)
Q Consensus       248 ~~aDiV~l~lP~t~~t~~li~~~~l~--~mk~gailIN~sRg~~  289 (370)
                      +.||+|++++|. ...+.++. +.-.  .+++++++|+++-|=-
T Consensus        92 ~~aDiIvlAVPs-q~l~~vl~-~l~~~~~l~~~~~iIS~aKGIe  133 (365)
T PTZ00345         92 EDADLLIFVIPH-QFLESVLS-QIKENNNLKKHARAISLTKGII  133 (365)
T ss_pred             hcCCEEEEEcCh-HHHHHHHH-HhccccccCCCCEEEEEeCCcc
Confidence            999999999994 34444432 2222  4667889999887643

>PRK06823 ornithine cyclodeaminase; Validated

Probab=96.96  E-value=0.0014  Score=64.06  Aligned_cols=94  Identities=14%  Similarity=0.078  Sum_probs=64.3

Q ss_pred             CceEEEEecCchhHHHHHHhcc-CCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEE
Q 017490          177 GKTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  254 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~-~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  254 (370)
                      -++++|+|.|..++.-++.+.. +.. +|.+|+|++.+...-.+.   +       .+.........+.++.++.||+|+
T Consensus       128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~---~-------~~~~~~v~~~~~~~~av~~ADIV~  197 (315)
T PRK06823        128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQY---A-------QALGFAVNTTLDAAEVAHAANLIV  197 (315)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHH---H-------HhcCCcEEEECCHHHHhcCCCEEE
Confidence            5699999999999998887653 333 799999987653110000   0       000000012367899999999999


Q ss_pred             EeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          255 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       255 l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                      .+.|   ++..+++.+.   +|||+.++.+|.
T Consensus       198 taT~---s~~P~~~~~~---l~~G~hi~~iGs  223 (315)
T PRK06823        198 TTTP---SREPLLQAED---IQPGTHITAVGA  223 (315)
T ss_pred             EecC---CCCceeCHHH---cCCCcEEEecCC
Confidence            9965   4557887765   589999999973

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.96  E-value=0.00092  Score=65.96  Aligned_cols=105  Identities=22%  Similarity=0.268  Sum_probs=62.5

Q ss_pred             cCCCCcccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccc----cc--------------hhhhcc
Q 017490          167 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQ----SS--------------ALAVKN  227 (370)
Q Consensus       167 ~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~----~~--------------~~~~~~  227 (370)
                      |+......|++++|.|||+|.+|..+|+.|...|. ++..+|+..-...--..+    +.              .+...+
T Consensus        14 ~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~in   93 (338)
T PRK12475         14 IGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKIN   93 (338)
T ss_pred             cCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHC
Confidence            44333467999999999999999999999999998 788899864210000000    00              000000


Q ss_pred             cccc-ccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHH
Q 017490          228 GIID-DLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFL  272 (370)
Q Consensus       228 ~~~~-~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l  272 (370)
                      ..+. +.........+++++++++|+|+.++ .+.+++.+++.-..
T Consensus        94 p~v~i~~~~~~~~~~~~~~~~~~~DlVid~~-D~~~~r~~in~~~~  138 (338)
T PRK12475         94 SEVEIVPVVTDVTVEELEELVKEVDLIIDAT-DNFDTRLLINDLSQ  138 (338)
T ss_pred             CCcEEEEEeccCCHHHHHHHhcCCCEEEEcC-CCHHHHHHHHHHHH
Confidence            0000 00000012245678889999998887 46777777775443

>PRK08291 ectoine utilization protein EutC; Validated

Probab=96.96  E-value=0.0011  Score=65.09  Aligned_cols=95  Identities=15%  Similarity=0.167  Sum_probs=61.7

Q ss_pred             cCceEEEEecCchhHHHHHHhcc-CCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEE
Q 017490          176 LGKTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  253 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~-~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  253 (370)
                      ..++++|||.|.+|+..+..+.. .+. +|.+|+|+..+...-...   +   .   ...........++++++.+||+|
T Consensus       131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~---~---~---~~~g~~v~~~~d~~~al~~aDiV  201 (330)
T PRK08291        131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAAD---L---R---AELGIPVTVARDVHEAVAGADII  201 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHH---H---h---hccCceEEEeCCHHHHHccCCEE
Confidence            35789999999999998887764 554 799999986542110000   0   0   00000011246789999999999


Q ss_pred             EEeccCChhhhcccCHHHHhcCCCCcEEEEcC
Q 017490          254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       254 ~l~lP~t~~t~~li~~~~l~~mk~gailIN~s  285 (370)
                      +++.|..   ..++..+.   +++|+.+..++
T Consensus       202 i~aT~s~---~p~i~~~~---l~~g~~v~~vg  227 (330)
T PRK08291        202 VTTTPSE---EPILKAEW---LHPGLHVTAMG  227 (330)
T ss_pred             EEeeCCC---CcEecHHH---cCCCceEEeeC
Confidence            9997753   45776654   57887776643

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.95  E-value=0.0018  Score=63.19  Aligned_cols=105  Identities=18%  Similarity=0.212  Sum_probs=62.2

Q ss_pred             eEEEEecCchhHHHHHHhccCCCEEEEEcCCCcccccccccc-chhhhccccccccccccCCCCCHHHHH-hcCCEEEEe
Q 017490          179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQS-SALAVKNGIIDDLVDEKGCHEDIFEFA-SKADVVVCC  256 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV~l~  256 (370)
                      +|+|||.|.+|..+|..|...|.+|..|+|+..... ..... ....+..+  ...........++++.+ ..+|+|+++
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~-~i~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~Dliiia   78 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFE-SINTKRKNLKYLPT--CHLPDNISVKSAIDEVLSDNATCIILA   78 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHH-HHHHcCCCcccCCC--CcCCCCeEEeCCHHHHHhCCCCEEEEE
Confidence            699999999999999999999999999998643210 00000 00000000  00000000124666666 589999999


Q ss_pred             ccCChhhhcccCHHHHh-cCCCCcEEEEcCCCc
Q 017490          257 LSLNKQTAGIVNKSFLS-SMKKGSLLVNIARGG  288 (370)
Q Consensus       257 lP~t~~t~~li~~~~l~-~mk~gailIN~sRg~  288 (370)
                      +|. .+++.++. +... .+++++.+|....|-
T Consensus        79 vks-~~~~~~l~-~l~~~~l~~~~~vv~~~nGi  109 (326)
T PRK14620         79 VPT-QQLRTICQ-QLQDCHLKKNTPILICSKGI  109 (326)
T ss_pred             eCH-HHHHHHHH-HHHHhcCCCCCEEEEEEcCe
Confidence            994 34544443 2233 567777777776664

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=96.94  E-value=0.0032  Score=52.43  Aligned_cols=97  Identities=20%  Similarity=0.223  Sum_probs=54.6

Q ss_pred             eEEEEe-cCchhHHHHHHhccC-CCEEEEE-cCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEE
Q 017490          179 TVFILG-FGNIGVELAKRLRPF-GVKIIAT-KRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  255 (370)
Q Consensus       179 tvGIiG-lG~IG~~vA~~l~~~-G~~V~~~-dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  255 (370)
                      ++||+| .|.+|+.+++.+... ++++.++ ++...........       ...............+++  ..++|+|++
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~--~~~~DvV~~   71 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEA-------GPHLKGEVVLELEPEDFE--ELAVDIVFL   71 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHH-------CcccccccccccccCChh--hcCCCEEEE
Confidence            589999 599999999988874 8887776 4332111000000       000000000000112232  258999999


Q ss_pred             eccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          256 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       256 ~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                      |+|.... ...+. .....+++|.++|++|.
T Consensus        72 ~~~~~~~-~~~~~-~~~~~~~~g~~viD~s~  100 (122)
T smart00859       72 ALPHGVS-KEIAP-LLPKAAEAGVKVIDLSS  100 (122)
T ss_pred             cCCcHHH-HHHHH-HHHhhhcCCCEEEECCc
Confidence            9996533 33222 23455799999999984

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=96.92  E-value=0.002  Score=63.18  Aligned_cols=95  Identities=18%  Similarity=0.238  Sum_probs=67.2

Q ss_pred             CceEEEEecCchhHHHHHHhcc-CCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEE
Q 017490          177 GKTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  254 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~-~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  254 (370)
                      -+++||||.|..++.-++.++. ++. +|.+|+|++.....-...   +.      ..+........+.+++++.||+|+
T Consensus       130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~---l~------~~~~~~v~a~~s~~~av~~aDiIv  200 (330)
T COG2423         130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAAR---LR------KRGGEAVGAADSAEEAVEGADIVV  200 (330)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHH---HH------hhcCccceeccCHHHHhhcCCEEE
Confidence            4589999999999999998864 555 799999987653211100   00      011111224578899999999999


Q ss_pred             EeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          255 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       255 l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                      .+.|.++   .++..+.   +|||+.+..++.
T Consensus       201 t~T~s~~---Pil~~~~---l~~G~hI~aiGa  226 (330)
T COG2423         201 TATPSTE---PVLKAEW---LKPGTHINAIGA  226 (330)
T ss_pred             EecCCCC---CeecHhh---cCCCcEEEecCC
Confidence            9977554   7787766   569999999984

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=96.92  E-value=0.0028  Score=68.54  Aligned_cols=132  Identities=14%  Similarity=0.017  Sum_probs=82.3

Q ss_pred             ceEEEEecCchhHHHHHHhc-cCCCEEEEEcCCCccccccccc-cchhh--hccccccc-----cccccCCCCCHHHHHh
Q 017490          178 KTVFILGFGNIGVELAKRLR-PFGVKIIATKRSWASHSQVSCQ-SSALA--VKNGIIDD-----LVDEKGCHEDIFEFAS  248 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~-~~G~~V~~~dr~~~~~~~~~~~-~~~~~--~~~~~~~~-----~~~~~~~~~~l~ell~  248 (370)
                      ++|+|||.|.||..+|..+. ..|++|..||++.......... ...+.  ...+....     .........++ +.++
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  388 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK  388 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence            68999999999999999988 7899999999875431110000 00000  00000000     00000012345 4678


Q ss_pred             cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCC
Q 017490          249 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW  313 (370)
Q Consensus       249 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~  313 (370)
                      .||+|+=++|-+.+.+.-+-++.=+.++|+++|...  .+.+....|.+.+.. +-+.+++--|.
T Consensus       389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasn--TS~l~i~~la~~~~~-p~r~ig~Hff~  450 (708)
T PRK11154        389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASN--TSSLPIGQIAAAAAR-PEQVIGLHYFS  450 (708)
T ss_pred             cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEEC--CCCCCHHHHHHhcCc-ccceEEEecCC
Confidence            999999999988887766656666778999988644  444667777777753 33445666664

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=96.92  E-value=0.0023  Score=69.42  Aligned_cols=132  Identities=19%  Similarity=0.127  Sum_probs=83.2

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccc-cchhh--hcccccc-----ccccccCCCCCHHHHHhc
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSALA--VKNGIID-----DLVDEKGCHEDIFEFASK  249 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~-~~~~~--~~~~~~~-----~~~~~~~~~~~l~ell~~  249 (370)
                      ++|+|||.|.||..+|..+...|++|+.+|+++......... ...+.  ...+...     ..........++ +.+++
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  414 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDY-SGFKN  414 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH-HHhcc
Confidence            589999999999999999998899999999886542110000 00000  0000000     000001112345 35789


Q ss_pred             CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCC
Q 017490          250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW  313 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~  313 (370)
                      ||+|+=++|-+.+.+.-+-++.=+.++++++|..  ..+.++..+|.+.+.. .-+..++-.|.
T Consensus       415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilas--NTSsl~i~~la~~~~~-p~r~ig~Hff~  475 (737)
T TIGR02441       415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIAS--NTSALPIKDIAAVSSR-PEKVIGMHYFS  475 (737)
T ss_pred             CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEE--cCCCCCHHHHHhhcCC-ccceEEEeccC
Confidence            9999999998888777666666677899988753  3344666777777754 33446777665

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=96.90  E-value=0.0019  Score=63.16  Aligned_cols=106  Identities=14%  Similarity=0.176  Sum_probs=65.0

Q ss_pred             ceEEEEecCchhHHHHHHhccC-CCEEEE-EcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPF-GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  255 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~-G~~V~~-~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  255 (370)
                      .+|||||+|+||+.+++.+... ++++.+ +|++.....                ..... .....+.++++.+.|+|++
T Consensus         4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~----------------~~~~~-v~~~~d~~e~l~~iDVViI   66 (324)
T TIGR01921         4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETL----------------DTETP-VYAVADDEKHLDDVDVLIL   66 (324)
T ss_pred             cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHH----------------hhcCC-ccccCCHHHhccCCCEEEE
Confidence            5899999999999999988754 889876 687642100                00011 1123467777789999999


Q ss_pred             eccCChhhhcccCHHHHhcCCCCcEEEEcCCCc--ccCHHH-HHHHHHh-CCce
Q 017490          256 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG--LLDYEA-IAHYLEC-GHLG  305 (370)
Q Consensus       256 ~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~--~vd~~a-L~~aL~~-g~i~  305 (370)
                      |.|....     -......++.|.-+|++.--.  +-+..+ |-++-++ |++.
T Consensus        67 ctPs~th-----~~~~~~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vs  115 (324)
T TIGR01921        67 CMGSATD-----IPEQAPYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVS  115 (324)
T ss_pred             cCCCccC-----HHHHHHHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEE
Confidence            9885422     123444567777788875321  123333 4444443 5554

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=96.90  E-value=0.0032  Score=68.01  Aligned_cols=132  Identities=15%  Similarity=0.033  Sum_probs=80.7

Q ss_pred             ceEEEEecCchhHHHHHHhc-cCCCEEEEEcCCCccccccccc-cchhh--hccccccc-----cccccCCCCCHHHHHh
Q 017490          178 KTVFILGFGNIGVELAKRLR-PFGVKIIATKRSWASHSQVSCQ-SSALA--VKNGIIDD-----LVDEKGCHEDIFEFAS  248 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~-~~G~~V~~~dr~~~~~~~~~~~-~~~~~--~~~~~~~~-----~~~~~~~~~~l~ell~  248 (370)
                      ++|+|||.|.||..+|..+. ..|++|..||+++......... ...+.  ...+.+..     .........++ +.++
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  383 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK  383 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence            58999999999999999887 5799999999886431110000 00000  00000000     00000012345 4679


Q ss_pred             cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCC
Q 017490          249 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW  313 (370)
Q Consensus       249 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~  313 (370)
                      .||+|+=++|...+.+.-+-++.=+.++++++|...  .+.+....|.+.++. +-+.+++--|.
T Consensus       384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasn--TS~l~i~~la~~~~~-p~r~~g~Hffn  445 (699)
T TIGR02440       384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASN--TSSLPIGQIAAAASR-PENVIGLHYFS  445 (699)
T ss_pred             cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeC--CCCCCHHHHHHhcCC-cccEEEEecCC
Confidence            999999999988887776656666778898887533  333556677777743 33445666664

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK06444 prephenate dehydrogenase; Provisional

Probab=96.84  E-value=0.0034  Score=57.27  Aligned_cols=61  Identities=21%  Similarity=0.303  Sum_probs=45.9

Q ss_pred             eEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEec
Q 017490          179 TVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  257 (370)
Q Consensus       179 tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  257 (370)
                      +++|||- |.+|+.+++.++..|+.|..                                          ++||+|++|+
T Consensus         2 ~~~iiG~~G~mG~~~~~~~~~~g~~v~~------------------------------------------~~~DlVilav   39 (197)
T PRK06444          2 MEIIIGKNGRLGRVLCSILDDNGLGVYI------------------------------------------KKADHAFLSV   39 (197)
T ss_pred             EEEEEecCCcHHHHHHHHHHhCCCEEEE------------------------------------------CCCCEEEEeC
Confidence            7999998 99999999999999998752                                          2589999999


Q ss_pred             cCChhhhcccCHHHHhcCCCCcEEEEcCCCcc
Q 017490          258 SLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL  289 (370)
Q Consensus       258 P~t~~t~~li~~~~l~~mk~gailIN~sRg~~  289 (370)
                      |.. .+..++     +.+.  .+++|++.-.-
T Consensus        40 Pv~-~~~~~i-----~~~~--~~v~Dv~SvK~   63 (197)
T PRK06444         40 PID-AALNYI-----ESYD--NNFVEISSVKW   63 (197)
T ss_pred             CHH-HHHHHH-----HHhC--CeEEeccccCH
Confidence            954 333333     3333  37889976443

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.84  E-value=0.0017  Score=59.59  Aligned_cols=40  Identities=20%  Similarity=0.335  Sum_probs=36.3

Q ss_pred             cccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      ..+++|++|.|||.|.+|..-++.|...|++|.++++...
T Consensus         4 ~l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~   43 (205)
T TIGR01470         4 FANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELE   43 (205)
T ss_pred             EEEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            4568999999999999999999999999999999998654

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=96.82  E-value=0.0026  Score=59.94  Aligned_cols=122  Identities=25%  Similarity=0.313  Sum_probs=72.0

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCCEEEEE--------cCCCccccccccccchhhhcccc-ccccccc-c--CCC
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT--------KRSWASHSQVSCQSSALAVKNGI-IDDLVDE-K--GCH  240 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~--------dr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~--~~~  240 (370)
                      ..++|+++.|-|+|++|+.+|+.|...|++|+++        |+..-...    ....+....+. +...... .  ..+
T Consensus        28 ~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~----~l~~~~~~~~~~v~~~~~~~~~~~~~  103 (244)
T PF00208_consen   28 DSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVE----ELLRIKEERGSRVDDYPLESPDGAEY  103 (244)
T ss_dssp             HSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHH----HHHHHHHHHSSHSTTGTHTCSSTSEE
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHH----HHHHHHHHhCCcccccccccccceeE
Confidence            3699999999999999999999999999998876        43321100    00000000000 0000000 0  000


Q ss_pred             CCHH-HHH-hcCCEEEEeccCChhhhcccCHHHHh-cCCCCcEEEEcC-CCcccCHHHHHHHHHhCCce
Q 017490          241 EDIF-EFA-SKADVVVCCLSLNKQTAGIVNKSFLS-SMKKGSLLVNIA-RGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       241 ~~l~-ell-~~aDiV~l~lP~t~~t~~li~~~~l~-~mk~gailIN~s-Rg~~vd~~aL~~aL~~g~i~  305 (370)
                      -+-+ +++ ..|||++.|-     ..+.|+.+... .+++|+-+|--+ .+++ ..++.. .|++..|.
T Consensus       104 ~~~~~~il~~~~DiliP~A-----~~~~I~~~~~~~~i~~~akiIvegAN~p~-t~~a~~-~L~~rGI~  165 (244)
T PF00208_consen  104 IPNDDEILSVDCDILIPCA-----LGNVINEDNAPSLIKSGAKIIVEGANGPL-TPEADE-ILRERGIL  165 (244)
T ss_dssp             ECHHCHGGTSSSSEEEEES-----SSTSBSCHHHCHCHHTT-SEEEESSSSSB-SHHHHH-HHHHTT-E
T ss_pred             eccccccccccccEEEEcC-----CCCeeCHHHHHHHHhccCcEEEeCcchhc-cHHHHH-HHHHCCCE
Confidence            1222 555 4899999882     45678888888 787776555554 5554 555555 88888876

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>PRK06199 ornithine cyclodeaminase; Validated

Probab=96.81  E-value=0.002  Score=64.55  Aligned_cols=100  Identities=22%  Similarity=0.268  Sum_probs=65.7

Q ss_pred             CceEEEEecCchhHHHHHHhcc-CC-C-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEE
Q 017490          177 GKTVFILGFGNIGVELAKRLRP-FG-V-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  253 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~-~G-~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  253 (370)
                      -+++||||.|..++.-++.+.. +. . +|.+|+|++.+...-...   +.  . ..... .......+.++++++||+|
T Consensus       155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~---~~--~-~~~~~-~~v~~~~s~~eav~~ADIV  227 (379)
T PRK06199        155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATW---VA--E-TYPQI-TNVEVVDSIEEVVRGSDIV  227 (379)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHH---HH--H-hcCCC-ceEEEeCCHHHHHcCCCEE
Confidence            4689999999999999988765 42 3 899999987652110000   00  0 00000 0011236899999999999


Q ss_pred             EEeccCCh---hhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          254 VCCLSLNK---QTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       254 ~l~lP~t~---~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                      +.|.+.+.   ++..++..+.   +|||+.++.++.
T Consensus       228 vtaT~s~~~~~s~~Pv~~~~~---lkpG~hv~~ig~  260 (379)
T PRK06199        228 TYCNSGETGDPSTYPYVKREW---VKPGAFLLMPAA  260 (379)
T ss_pred             EEccCCCCCCCCcCcEecHHH---cCCCcEEecCCc
Confidence            99987543   3457787665   579998887765

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=96.81  E-value=0.0024  Score=62.16  Aligned_cols=126  Identities=14%  Similarity=0.116  Sum_probs=74.7

Q ss_pred             ceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhcccccccccc-ccCCCCCHHHHHhcCCEEEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVVC  255 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~l  255 (370)
                      ++|+|||.|.+|..+|..+...|. +|+.+|..........   .++..+.  ...... ......+.++ +++||+|++
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a---~d~~~~~--~~~~~~~~i~~t~d~~~-~~~aDiVIi   75 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKA---LDMYEAS--PVGGFDTKVTGTNNYAD-TANSDIVVI   75 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHH---Hhhhhhh--hccCCCcEEEecCCHHH-hCCCCEEEE
Confidence            479999999999999999887665 8999998543211000   0010000  000000 1112246666 789999999


Q ss_pred             eccCChhhhc------------ccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHhCCceEEE--Ee
Q 017490          256 CLSLNKQTAG------------IVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHY--LECGHLGGLG--ID  310 (370)
Q Consensus       256 ~lP~t~~t~~------------li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~a--L~~g~i~ga~--lD  310 (370)
                      +.+.. ...+            ++.  .+.+....+++++|+++..-=+-...+.+.  +...++.|.+  ||
T Consensus        76 tag~p-~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld  147 (305)
T TIGR01763        76 TAGLP-RKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD  147 (305)
T ss_pred             cCCCC-CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence            98832 2111            111  122444467899999987655555555555  5555677765  67

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=96.80  E-value=0.00096  Score=54.95  Aligned_cols=65  Identities=18%  Similarity=0.259  Sum_probs=46.4

Q ss_pred             eEEEEecCchhHHHHHHhccC--CCEEE-EEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHh--cCC
Q 017490          179 TVFILGFGNIGVELAKRLRPF--GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS--KAD  251 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~--G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~--~aD  251 (370)
                      ++||||+|.+|+...+.+...  +++|. ++|+++.+..                 ......+  .+.+++++++  +.|
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~-----------------~~~~~~~~~~~~~~~~ll~~~~~D   64 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAE-----------------AFAEKYGIPVYTDLEELLADEDVD   64 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHH-----------------HHHHHTTSEEESSHHHHHHHTTES
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHH-----------------HHHHHhcccchhHHHHHHHhhcCC
Confidence            699999999999998877655  56765 6787654321                 1111122  4578999998  789


Q ss_pred             EEEEeccCC
Q 017490          252 VVVCCLSLN  260 (370)
Q Consensus       252 iV~l~lP~t  260 (370)
                      +|+++.|..
T Consensus        65 ~V~I~tp~~   73 (120)
T PF01408_consen   65 AVIIATPPS   73 (120)
T ss_dssp             EEEEESSGG
T ss_pred             EEEEecCCc
Confidence            999999853

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=96.80  E-value=0.0041  Score=51.75  Aligned_cols=101  Identities=14%  Similarity=0.255  Sum_probs=65.9

Q ss_pred             ceEEEEe----cCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEE
Q 017490          178 KTVFILG----FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  253 (370)
Q Consensus       178 ~tvGIiG----lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  253 (370)
                      |+++|||    -|..|..+.+.|+..|++|+.+++.....                  ....   .+.+++|.-...|++
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i------------------~G~~---~y~sl~e~p~~iDla   59 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI------------------LGIK---CYPSLAEIPEPIDLA   59 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE------------------TTEE----BSSGGGCSST-SEE
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE------------------CcEE---eeccccCCCCCCCEE
Confidence            6899999    78999999999999999999998765331                  1111   356777744789999


Q ss_pred             EEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceE
Q 017490          254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGG  306 (370)
Q Consensus       254 ~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~g  306 (370)
                      ++++|. +.+..+++  .+..+..+.+++..+    ..++++.+.+++..+.-
T Consensus        60 vv~~~~-~~~~~~v~--~~~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~v  105 (116)
T PF13380_consen   60 VVCVPP-DKVPEIVD--EAAALGVKAVWLQPG----AESEELIEAAREAGIRV  105 (116)
T ss_dssp             EE-S-H-HHHHHHHH--HHHHHT-SEEEE-TT----S--HHHHHHHHHTT-EE
T ss_pred             EEEcCH-HHHHHHHH--HHHHcCCCEEEEEcc----hHHHHHHHHHHHcCCEE
Confidence            999994 34444443  233345678888887    67888999999887763

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=96.78  E-value=0.0034  Score=59.54  Aligned_cols=103  Identities=17%  Similarity=0.216  Sum_probs=64.8

Q ss_pred             ceEEEEecCchhHHHHHHhccC---CCEEE-EEcCCCccccccccccchhhhccccccccccccCCCCCHHHH-HhcCCE
Q 017490          178 KTVFILGFGNIGVELAKRLRPF---GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF-ASKADV  252 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~---G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDi  252 (370)
                      .+|||||+|.||+.+++.+..-   ++++. ++++.....                 ..+........+++++ ....|+
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~-----------------~~~~~~~~~~~~l~~ll~~~~Dl   65 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLP-----------------PALAGRVALLDGLPGLLAWRPDL   65 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHH-----------------HHhhccCcccCCHHHHhhcCCCE
Confidence            5899999999999999988652   35544 455543221                 0111111134689997 578999


Q ss_pred             EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccC---HHHHHHHHHhC
Q 017490          253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLD---YEAIAHYLECG  302 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd---~~aL~~aL~~g  302 (370)
                      |+=|.... ..+. ...   +-++.|.-++=.|-|.+-|   ++.|.++.+++
T Consensus        66 VVE~A~~~-av~e-~~~---~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~  113 (267)
T PRK13301         66 VVEAAGQQ-AIAE-HAE---GCLTAGLDMIICSAGALADDALRARLIAAAEAG  113 (267)
T ss_pred             EEECCCHH-HHHH-HHH---HHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhC
Confidence            98886532 2221 122   2355677788888888887   55566666654

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=96.77  E-value=0.0024  Score=62.07  Aligned_cols=91  Identities=13%  Similarity=0.168  Sum_probs=63.6

Q ss_pred             CceEEEEecCchhHHHHHHhcc-CCC-EEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHHhcC
Q 017490          177 GKTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKA  250 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~-~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~a  250 (370)
                      -+++||||.|..|+.-++.+.. +.. +|.+|+|++.+...       |.      .+.....+    ...+.++.+.+|
T Consensus       117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~-------f~------~~~~~~~~~~v~~~~~~~eav~~a  183 (301)
T PRK06407        117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARA-------FA------ERFSKEFGVDIRPVDNAEAALRDA  183 (301)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHH-------HH------HHHHHhcCCcEEEeCCHHHHHhcC
Confidence            5799999999999988887764 444 79999998765211       00      01111111    236899999999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                      |+|+.+.|   ++..+++.+.   +|||+.++-++.
T Consensus       184 DIV~taT~---s~~P~~~~~~---l~pg~hV~aiGs  213 (301)
T PRK06407        184 DTITSITN---SDTPIFNRKY---LGDEYHVNLAGS  213 (301)
T ss_pred             CEEEEecC---CCCcEecHHH---cCCCceEEecCC
Confidence            99999966   4557887765   578988777664

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.76  E-value=0.0025  Score=61.65  Aligned_cols=37  Identities=24%  Similarity=0.383  Sum_probs=34.4

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      .|+.+||+|+|.+|.--.+.++++|++|+++|+..++
T Consensus       181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~k  217 (360)
T KOG0023|consen  181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKK  217 (360)
T ss_pred             CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchh
Confidence            7999999999999999999999999999999988643

>PRK14030 glutamate dehydrogenase; Provisional

Probab=96.76  E-value=0.032  Score=56.89  Aligned_cols=174  Identities=16%  Similarity=0.074  Sum_probs=91.9

Q ss_pred             cccccCceEEEEecCchhHHHHHHhccCCCEEEE--------EcCCCccccccccccchhhhcccccc-cccccc-C-CC
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA--------TKRSWASHSQVSCQSSALAVKNGIID-DLVDEK-G-CH  240 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~--------~dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~-~~  240 (370)
                      +.++.|+||.|=|+|++|+..|+.|..+|++|++        ||+..-.... ......+.-.++.+. .....+ + ..
T Consensus       223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~-l~~l~~~k~~~~~~~~~~~~~~~ga~~  301 (445)
T PRK14030        223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEK-IDYMLELRASGNDIVAPYAEKFPGSTF  301 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHH-HHHHHHHHHhcCccHHHHHhcCCCCEE
Confidence            4578999999999999999999999999999999        6654322100 000000000000000 000011 1 11


Q ss_pred             CCHHHHH-hcCCEEEEeccCChhhhcccCHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCC
Q 017490          241 EDIFEFA-SKADVVVCCLSLNKQTAGIVNKSFLSSMK--KGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPF  317 (370)
Q Consensus       241 ~~l~ell-~~aDiV~l~lP~t~~t~~li~~~~l~~mk--~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl  317 (370)
                      .+-++++ ..|||++-|     .+.+.|+.+....+.  .=.+++--+.+ +++.+ -.+.|.+..|..+ =|+..+-==
T Consensus       302 i~~~~~~~~~cDVliPc-----Al~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~e-A~~iL~~rGI~~v-PD~~aNAGG  373 (445)
T PRK14030        302 FAGKKPWEQKVDIALPC-----ATQNELNGEDADKLIKNGVLCVAEVSNM-GCTAE-AIDKFIAAKQLFA-PGKAVNAGG  373 (445)
T ss_pred             cCCccceeccccEEeec-----cccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHH-HHHHHHHCCCEEe-CcceecCCC
Confidence            1223333 379988766     377789888777772  23456666677 55554 4477787777632 233221100


Q ss_pred             CCCCcccCCCceEEccCCCCccHHHHHHHHHHHHHHHHHH
Q 017490          318 DPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQL  357 (370)
Q Consensus       318 ~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~  357 (370)
                      -.-+-+=-.-|   .-|..|..++..+++.+...+...+.
T Consensus       374 Vivs~~E~~qn---~~~~~w~~eeV~~~L~~~m~~~~~~v  410 (445)
T PRK14030        374 VATSGLEMSQN---AMHLSWSAEEVDEKLHQIMSGIHEQC  410 (445)
T ss_pred             eeeehhhhhcc---ccccCcCHHHHHHHHHHHHHHHHHHH
Confidence            00000000112   23455556666666666655555544

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.76  E-value=0.00085  Score=62.40  Aligned_cols=116  Identities=24%  Similarity=0.276  Sum_probs=67.4

Q ss_pred             ccCCCCcccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccc----cchh------------hhccc
Q 017490          166 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQ----SSAL------------AVKNG  228 (370)
Q Consensus       166 ~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~----~~~~------------~~~~~  228 (370)
                      .|+......|..++|.|+|+|.+|..+|+.|...|. ++..+|...-...--..+    ..+.            ...+.
T Consensus        10 ~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np   89 (228)
T cd00757          10 EIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINP   89 (228)
T ss_pred             hcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCC
Confidence            355444467899999999999999999999999998 788887653221000000    0000            00000


Q ss_pred             cc-cccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcC
Q 017490          229 II-DDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       229 ~~-~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~s  285 (370)
                      .. .+.........++++++.++|+|+.|+. +.+++.++++...+   .+.-+|..+
T Consensus        90 ~~~i~~~~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~---~~ip~i~~g  143 (228)
T cd00757          90 DVEIEAYNERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVK---LGKPLVSGA  143 (228)
T ss_pred             CCEEEEecceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHH---cCCCEEEEE
Confidence            00 0000000012345678889999988876 56777777755443   345567665

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.72  E-value=0.0024  Score=58.37  Aligned_cols=39  Identities=26%  Similarity=0.298  Sum_probs=35.6

Q ss_pred             cccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCC
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      ..+++|++|.|||.|.+|...++.|...|++|+++++..
T Consensus         5 ~l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~   43 (202)
T PRK06718          5 MIDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPEL   43 (202)
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            457999999999999999999999999999999998754

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=96.66  E-value=0.0014  Score=63.00  Aligned_cols=79  Identities=16%  Similarity=0.185  Sum_probs=50.4

Q ss_pred             cccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCE
Q 017490          174 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  252 (370)
Q Consensus       174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  252 (370)
                      .++|+++.|||.|.+|++++..|...|+ +|.+++|+..+...-...   +.  .   ...........++.+.+.++|+
T Consensus       122 ~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~---~~--~---~~~~~~~~~~~~~~~~~~~~Di  193 (282)
T TIGR01809       122 PLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDL---GV--Q---VGVITRLEGDSGGLAIEKAAEV  193 (282)
T ss_pred             ccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHH---hh--h---cCcceeccchhhhhhcccCCCE
Confidence            3678999999999999999999999998 699999986542110000   00  0   0000000001233455678999


Q ss_pred             EEEeccCC
Q 017490          253 VVCCLSLN  260 (370)
Q Consensus       253 V~l~lP~t  260 (370)
                      |+.++|..
T Consensus       194 VInaTp~g  201 (282)
T TIGR01809       194 LVSTVPAD  201 (282)
T ss_pred             EEECCCCC
Confidence            99998864

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>COG5322 Predicted dehydrogenase [General function prediction only]

Probab=96.64  E-value=0.0082  Score=56.77  Aligned_cols=105  Identities=22%  Similarity=0.166  Sum_probs=65.3

Q ss_pred             CcccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHH
Q 017490          171 TGETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFA  247 (370)
Q Consensus       171 ~~~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell  247 (370)
                      .|.+|+..||+|+|+ |.||..+|+.+.+.+++....-|.........     +.       .+..+.+  ...+++..+
T Consensus       161 lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~-----l~-------~l~e~~~~~~i~s~d~~~  228 (351)
T COG5322         161 LGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQR-----LT-------LLQEELGRGKIMSLDYAL  228 (351)
T ss_pred             hCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhh-----hh-------hcccccCCCeeeeccccc
Confidence            478999999999997 99999999999998887655544322111000     00       1111122  223555555


Q ss_pred             hcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCH
Q 017490          248 SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDY  292 (370)
Q Consensus       248 ~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~  292 (370)
                      .+.|+++-..  +..+-..|+...   +|||+++++-++..=+|+
T Consensus       229 ~~e~i~v~vA--s~~~g~~I~pq~---lkpg~~ivD~g~P~dvd~  268 (351)
T COG5322         229 PQEDILVWVA--SMPKGVEIFPQH---LKPGCLIVDGGYPKDVDT  268 (351)
T ss_pred             cccceEEEEe--ecCCCceechhh---ccCCeEEEcCCcCccccc
Confidence            5555544332  223445677654   699999999998875554

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=96.61  E-value=0.0075  Score=58.15  Aligned_cols=37  Identities=19%  Similarity=0.211  Sum_probs=33.9

Q ss_pred             cccCceEEEEecCchhHHHHHHhccCCCE-EEEEcCCC
Q 017490          174 TLLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSW  210 (370)
Q Consensus       174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~~-V~~~dr~~  210 (370)
                      .+.|+++.|+|.|.+|++++..|...|++ |.+++|+.
T Consensus       123 ~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        123 DVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            46789999999999999999999999996 99999975

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=96.60  E-value=0.0076  Score=56.86  Aligned_cols=89  Identities=19%  Similarity=0.302  Sum_probs=57.8

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEec
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  257 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  257 (370)
                      .++-|+|.|.+++++|+.++.+|++|.++|.++.-.                     ..        ..+..++.+....
T Consensus       101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~---------------------~~--------~~~~~~~~~~~~~  151 (246)
T TIGR02964       101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEF---------------------PE--------DLPDGVATLVTDE  151 (246)
T ss_pred             CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccc---------------------cc--------cCCCCceEEecCC
Confidence            378999999999999999999999999999763310                     00        0012233222211


Q ss_pred             cCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          258 SLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       258 P~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      |          .+.+..+.+.+.+|=+.++.-.|.+.|..+|.+....
T Consensus       152 ~----------~~~~~~~~~~t~vvi~th~h~~D~~~L~~aL~~~~~~  189 (246)
T TIGR02964       152 P----------EAEVAEAPPGSYFLVLTHDHALDLELCHAALRRGDFA  189 (246)
T ss_pred             H----------HHHHhcCCCCcEEEEEeCChHHHHHHHHHHHhCCCCc
Confidence            1          1222234566777777788888888888888544443

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=96.59  E-value=0.0048  Score=52.92  Aligned_cols=86  Identities=21%  Similarity=0.313  Sum_probs=50.5

Q ss_pred             EEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccC
Q 017490          180 VFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSL  259 (370)
Q Consensus       180 vGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~  259 (370)
                      +-|+|.|.+|+++++.++.+|++|.++|+++..                                  ++.++-+ .+.+.
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~----------------------------------~~~~~~~-~~~~~   45 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPER----------------------------------FPEADEV-ICIPP   45 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC-----------------------------------TTSSEE-ECSHH
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCccc----------------------------------cCCCCcc-EecCh
Confidence            469999999999999999999999999976322                                  1123332 22221


Q ss_pred             ChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEE
Q 017490          260 NKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGI  309 (370)
Q Consensus       260 t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~l  309 (370)
                       ++..     +.+ .+.+++.+| +.++.-.|.+.|.++|+. ...+.|+
T Consensus        46 -~~~~-----~~~-~~~~~t~Vv-~th~h~~D~~~L~~~l~~-~~~YiG~   86 (136)
T PF13478_consen   46 -DDIL-----EDL-EIDPNTAVV-MTHDHELDAEALEAALAS-PARYIGL   86 (136)
T ss_dssp             -HHHH-----HHC--S-TT-EEE---S-CCCHHHHHHHHTTS-S-SEEEE
T ss_pred             -HHHH-----hcc-CCCCCeEEE-EcCCchhHHHHHHHHHcC-CCCEEEe
Confidence             1111     111 355666666 788888899888888887 4544443

>PTZ00117 malate dehydrogenase; Provisional

Probab=96.56  E-value=0.0071  Score=59.21  Aligned_cols=130  Identities=12%  Similarity=0.047  Sum_probs=74.2

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCC-CEEEEEcCCCccccccccccchhhhcccccccccc-ccCCCCCHHHHHhcCCE
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADV  252 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDi  252 (370)
                      ...++|+|||.|.||..+|..+...| .+|..+|++....... ..  ++.....  ..... ......+.+ .++.||+
T Consensus         3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~-~l--Dl~~~~~--~~~~~~~i~~~~d~~-~l~~ADi   76 (319)
T PTZ00117          3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGK-AL--DLKHFST--LVGSNINILGTNNYE-DIKDSDV   76 (319)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhH-HH--HHhhhcc--ccCCCeEEEeCCCHH-HhCCCCE
Confidence            34679999999999999999988777 6899999875432110 00  0100000  00000 000124565 7799999


Q ss_pred             EEEec--cCChh-hh--------cccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH--hCCceEEE--Ee
Q 017490          253 VVCCL--SLNKQ-TA--------GIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE--CGHLGGLG--ID  310 (370)
Q Consensus       253 V~l~l--P~t~~-t~--------~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~--~g~i~ga~--lD  310 (370)
                      |+++.  |..+. ++        .++-  .+.+....|.+++|+++...-+-...+.+.-.  ..++.|.+  ||
T Consensus        77 VVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~gt~ld  151 (319)
T PTZ00117         77 VVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMAGVLD  151 (319)
T ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEecchHH
Confidence            99998  44331 11        1110  12344457889999997655444444444432  34566555  55

>PRK07589 ornithine cyclodeaminase; Validated

Probab=96.53  E-value=0.0044  Score=61.31  Aligned_cols=96  Identities=15%  Similarity=0.158  Sum_probs=62.2

Q ss_pred             CceEEEEecCchhHHHHHHhc-cCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEE
Q 017490          177 GKTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  254 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~-~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  254 (370)
                      -++++|||.|..++.-++.+. -+.. +|.+|+|++.+...-...   +       .....+.....+.++.+++||+|+
T Consensus       129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~---~-------~~~~~~v~~~~~~~~av~~ADIIv  198 (346)
T PRK07589        129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARN---L-------AGPGLRIVACRSVAEAVEGADIIT  198 (346)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHH---H-------HhcCCcEEEeCCHHHHHhcCCEEE
Confidence            468999999999988877654 3444 799999987652110000   0       000000112468999999999999


Q ss_pred             EeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          255 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       255 l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                      .+.|.+ +...++..+.   +|||+.+.-++.
T Consensus       199 taT~S~-~~~Pvl~~~~---lkpG~hV~aIGs  226 (346)
T PRK07589        199 TVTADK-TNATILTDDM---VEPGMHINAVGG  226 (346)
T ss_pred             EecCCC-CCCceecHHH---cCCCcEEEecCC
Confidence            998632 2235677654   599998887663

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.52  E-value=0.0034  Score=59.19  Aligned_cols=116  Identities=22%  Similarity=0.303  Sum_probs=65.7

Q ss_pred             ccCCCCcccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccc----cch------------hhhccc
Q 017490          166 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQ----SSA------------LAVKNG  228 (370)
Q Consensus       166 ~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~----~~~------------~~~~~~  228 (370)
                      .|+......|+.++|+|||+|.+|..+|+.|...|. ++..+|...-...--..+    +.+            +...+.
T Consensus        21 ~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp  100 (245)
T PRK05690         21 GFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINP  100 (245)
T ss_pred             hcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCC
Confidence            455444467999999999999999999999998887 788888653221000000    000            000000


Q ss_pred             ccc-ccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcC
Q 017490          229 IID-DLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       229 ~~~-~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~s  285 (370)
                      .+. +.........+++++++++|+|+.|+- +.+++..++....+..   .-+|..+
T Consensus       101 ~v~i~~~~~~i~~~~~~~~~~~~DiVi~~~D-~~~~r~~ln~~~~~~~---ip~v~~~  154 (245)
T PRK05690        101 HIAIETINARLDDDELAALIAGHDLVLDCTD-NVATRNQLNRACFAAK---KPLVSGA  154 (245)
T ss_pred             CCEEEEEeccCCHHHHHHHHhcCCEEEecCC-CHHHHHHHHHHHHHhC---CEEEEee
Confidence            000 000000011234567889999888874 6677777776554443   3356543

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=96.49  E-value=0.0055  Score=61.28  Aligned_cols=121  Identities=22%  Similarity=0.259  Sum_probs=74.0

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhh-----ccccccccccccC-CCCCHHHH
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAV-----KNGIIDDLVDEKG-CHEDIFEF  246 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~l~el  246 (370)
                      .+++|+||.|=|+|++|+..|+.|...|.+|++++.+.... ...+   .+.+     ..+.........+ .+-+-+++
T Consensus       203 ~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i-~~~~---Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e~  278 (411)
T COG0334         203 DDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGI-YDED---GLDVEALLELKERRGSVAEYAGAEYITNEEL  278 (411)
T ss_pred             CCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCce-ecCC---CCCHHHHHHHhhhhhhHHhhcCceEcccccc
Confidence            44899999999999999999999998899999988765410 0000   0000     0000000111111 12223555


Q ss_pred             Hh-cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          247 AS-KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       247 l~-~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      +. .|||++-|     .+.+.|+.+...++|-. +++--+.|++- .+|- +.|.+..|-
T Consensus       279 ~~~~cDIl~Pc-----A~~n~I~~~na~~l~ak-~V~EgAN~P~t-~eA~-~i~~erGIl  330 (411)
T COG0334         279 LEVDCDILIPC-----ALENVITEDNADQLKAK-IVVEGANGPTT-PEAD-EILLERGIL  330 (411)
T ss_pred             ccccCcEEccc-----ccccccchhhHHHhhhc-EEEeccCCCCC-HHHH-HHHHHCCCE
Confidence            54 79988655     47778988888888766 78888888864 3333 333344443

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=96.44  E-value=0.0032  Score=62.21  Aligned_cols=44  Identities=32%  Similarity=0.495  Sum_probs=37.2

Q ss_pred             cCCCCcccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCC
Q 017490          167 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  210 (370)
Q Consensus       167 ~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~  210 (370)
                      |+......|..++|.|||+|.+|..+|+.|...|. ++..+|...
T Consensus        14 ~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         14 IGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             cCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            44333467899999999999999999999999998 899999753

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=96.41  E-value=0.0047  Score=58.61  Aligned_cols=127  Identities=18%  Similarity=0.203  Sum_probs=74.5

Q ss_pred             EEEEec-CchhHHHHHHhccCC----CEEEEEcCCCccccccccccchhhhcccccccc-ccccCCCCCHHHHHhcCCEE
Q 017490          180 VFILGF-GNIGVELAKRLRPFG----VKIIATKRSWASHSQVSCQSSALAVKNGIIDDL-VDEKGCHEDIFEFASKADVV  253 (370)
Q Consensus       180 vGIiGl-G~IG~~vA~~l~~~G----~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ell~~aDiV  253 (370)
                      |+|||. |.+|..+|..+...|    .+|..||.+.............+.      ... ........++++.+++||+|
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~------~~~~~~~i~~~~d~~~~~~~aDiV   74 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAV------EPLADIKVSITDDPYEAFKDADVV   74 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhh------hhccCcEEEECCchHHHhCCCCEE
Confidence            589999 999999999988777    689999987644211110000000      000 00001235678889999999


Q ss_pred             EEeccC--Ch-hhh--------cccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHhCCceEEE-EecC
Q 017490          254 VCCLSL--NK-QTA--------GIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHY--LECGHLGGLG-IDVA  312 (370)
Q Consensus       254 ~l~lP~--t~-~t~--------~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~a--L~~g~i~ga~-lDV~  312 (370)
                      +++.-.  .+ .++        .++.  .+.+.+..|.+++||.+..-=+-...+.+.  +...++.|.+ +|..
T Consensus        75 v~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~~ld~~  149 (263)
T cd00650          75 IITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLGTLDPI  149 (263)
T ss_pred             EECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCchhEEEeecchHH
Confidence            996421  11 011        1111  123445568999999964333334445555  4567788888 8875

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=96.38  E-value=0.024  Score=57.26  Aligned_cols=89  Identities=25%  Similarity=0.319  Sum_probs=62.5

Q ss_pred             cccCceEEEEec----------CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCH
Q 017490          174 TLLGKTVFILGF----------GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDI  243 (370)
Q Consensus       174 ~l~g~tvGIiGl----------G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  243 (370)
                      .+.|++|+|+|+          ..-...+++.|...|.+|.+||+......                   ........++
T Consensus       310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~-------------------~~~~~~~~~~  370 (411)
T TIGR03026       310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEE-------------------VKGLPLIDDL  370 (411)
T ss_pred             cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhh-------------------hhhcccCCCH
Confidence            589999999998          44677899999999999999998743310                   0011123678


Q ss_pred             HHHHhcCCEEEEeccCChhhhcccCHHHHhc-CCCCcEEEEc
Q 017490          244 FEFASKADVVVCCLSLNKQTAGIVNKSFLSS-MKKGSLLVNI  284 (370)
Q Consensus       244 ~ell~~aDiV~l~lP~t~~t~~li~~~~l~~-mk~gailIN~  284 (370)
                      ++.++.+|+|+++.+.. +.+. ++-+.++. |+ ..+++|+
T Consensus       371 ~~~~~~ad~~v~~t~~~-~~~~-~~~~~~~~~~~-~~~v~D~  409 (411)
T TIGR03026       371 EEALKGADALVILTDHD-EFKD-LDLEKIKDLMK-GKVVVDT  409 (411)
T ss_pred             HHHHhCCCEEEEecCCH-HHhc-cCHHHHHHhcC-CCEEEeC
Confidence            89999999999998743 3333 34444443 54 4578775

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.31  E-value=0.0069  Score=53.18  Aligned_cols=41  Identities=27%  Similarity=0.284  Sum_probs=36.3

Q ss_pred             CCcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCC
Q 017490          170 PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       170 ~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      |...+|+|++|.|||.|.+|...++.|...|++|.++++..
T Consensus         6 P~~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~   46 (157)
T PRK06719          6 PLMFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEI   46 (157)
T ss_pred             ceEEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCcc
Confidence            34568999999999999999999999999999999997543

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=96.23  E-value=0.062  Score=54.87  Aligned_cols=127  Identities=19%  Similarity=0.174  Sum_probs=70.7

Q ss_pred             cccccCceEEEEecCchhHHHHHHhccCCCEEE-EEcCCCcccc-ccccc-----cchhhhcc-cccccccccc-C-CCC
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKII-ATKRSWASHS-QVSCQ-----SSALAVKN-GIIDDLVDEK-G-CHE  241 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~-~~dr~~~~~~-~~~~~-----~~~~~~~~-~~~~~~~~~~-~-~~~  241 (370)
                      +.++.|+||.|=|+|++|+..|+.|..+|++|+ +.|.+..-.. .-.+.     ..++.... +.+.+..... + .+.
T Consensus       232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~  311 (454)
T PTZ00079        232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV  311 (454)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe
Confidence            467999999999999999999999999999999 4444310000 00000     00000000 0001111000 0 111


Q ss_pred             CHHHHH-hcCCEEEEeccCChhhhcccCHHHHhcC-CCCcEEEEc-CCCcccCHHHHHHHHHhCCce
Q 017490          242 DIFEFA-SKADVVVCCLSLNKQTAGIVNKSFLSSM-KKGSLLVNI-ARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       242 ~l~ell-~~aDiV~l~lP~t~~t~~li~~~~l~~m-k~gailIN~-sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      +-++++ ..|||.+-|     .+.+.|+.+..+.+ +.++.+|-- +.+++ .. +-.+.|++..|.
T Consensus       312 ~~~~~~~~~cDI~iPc-----A~~n~I~~~~a~~l~~~~ak~V~EgAN~p~-t~-eA~~~L~~~GI~  371 (454)
T PTZ00079        312 PGKKPWEVPCDIAFPC-----ATQNEINLEDAKLLIKNGCKLVAEGANMPT-TI-EATHLFKKNGVI  371 (454)
T ss_pred             CCcCcccCCccEEEec-----cccccCCHHHHHHHHHcCCeEEEecCCCCC-CH-HHHHHHHHCCcE
Confidence            122322 379988766     36778888876655 445555544 45554 44 455777777775

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=96.16  E-value=0.0078  Score=60.04  Aligned_cols=36  Identities=36%  Similarity=0.409  Sum_probs=32.7

Q ss_pred             CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      .++|||||-|..|+.++..++.+|++|+++|+++..
T Consensus         2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~   37 (372)
T PRK06019          2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDS   37 (372)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCC
Confidence            378999999999999999999999999999987544

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.16  E-value=0.015  Score=59.64  Aligned_cols=120  Identities=17%  Similarity=0.098  Sum_probs=69.5

Q ss_pred             cccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEE
Q 017490          174 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  253 (370)
Q Consensus       174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  253 (370)
                      -+.+++|+|+|+|..|.++|+.|+..|++|.++|+...........  .+.      ...+. ........+.+.++|+|
T Consensus        11 ~~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~--~l~------~~gi~-~~~~~~~~~~~~~~dlV   81 (458)
T PRK01710         11 FIKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSN--ELK------ELGVK-LVLGENYLDKLDGFDVI   81 (458)
T ss_pred             hhcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHH--HHH------hCCCE-EEeCCCChHHhccCCEE
Confidence            3568899999999999999999999999999999865321100000  000      00000 00011223445789988


Q ss_pred             EEeccCChhhhc-----------ccCH-HHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 017490          254 VCCLSLNKQTAG-----------IVNK-SFL-SSMKKGSLLVNIARGGLLDYEAIAHYLECGH  303 (370)
Q Consensus       254 ~l~lP~t~~t~~-----------li~~-~~l-~~mk~gailIN~sRg~~vd~~aL~~aL~~g~  303 (370)
                      +.. |.-+.+..           +++. +.+ ...+...+-|--+.|..-..+-|...|....
T Consensus        82 V~S-pgi~~~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g  143 (458)
T PRK01710         82 FKT-PSMRIDSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEG  143 (458)
T ss_pred             EEC-CCCCCCchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence            886 53322221           1221 122 2223335566666788887777778887543

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=96.10  E-value=0.0031  Score=54.21  Aligned_cols=122  Identities=20%  Similarity=0.224  Sum_probs=69.7

Q ss_pred             EEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccC
Q 017490          180 VFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSL  259 (370)
Q Consensus       180 vGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~  259 (370)
                      |+|+|.|.||..+|.+|+..|++|..+.|.. .......  ..+.+....-..............+.....|+|++|+..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa   77 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKE--QGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA   77 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHH--HCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhh--eeEEEEecccceecccccccCcchhccCCCcEEEEEecc
Confidence            6899999999999999988999999999875 2110000  011111000000000000011123466789999999874


Q ss_pred             ChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEE
Q 017490          260 NKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGL  307 (370)
Q Consensus       260 t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga  307 (370)
                      . ++...+.. .-..+++++.++-.-.| +-.++.+.+.+...++.++
T Consensus        78 ~-~~~~~l~~-l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g  122 (151)
T PF02558_consen   78 Y-QLEQALQS-LKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGG  122 (151)
T ss_dssp             G-GHHHHHHH-HCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEE
T ss_pred             c-chHHHHHH-HhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEE
Confidence            3 44444432 44455667677766555 4556777777755566543

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=96.10  E-value=0.018  Score=54.52  Aligned_cols=64  Identities=20%  Similarity=0.286  Sum_probs=45.2

Q ss_pred             ceEEEEec-CchhHHHHHHhcc-CCCEEEE-EcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCCE
Q 017490          178 KTVFILGF-GNIGVELAKRLRP-FGVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADV  252 (370)
Q Consensus       178 ~tvGIiGl-G~IG~~vA~~l~~-~G~~V~~-~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDi  252 (370)
                      .+|+|+|+ |.||+.+++.+.. -++++.+ +|+......                 .. ...+  .+.+++++++.+|+
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~-----------------~~-~~~~i~~~~dl~~ll~~~Dv   63 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLV-----------------GQ-GALGVAITDDLEAVLADADV   63 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccc-----------------cc-CCCCccccCCHHHhccCCCE
Confidence            47999998 9999999998875 4788655 776643310                 00 1111  34688998889999


Q ss_pred             EEEeccC
Q 017490          253 VVCCLSL  259 (370)
Q Consensus       253 V~l~lP~  259 (370)
                      |+.+.|.
T Consensus        64 Vid~t~p   70 (257)
T PRK00048         64 LIDFTTP   70 (257)
T ss_pred             EEECCCH
Confidence            9988763

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=96.06  E-value=0.0014  Score=60.33  Aligned_cols=155  Identities=21%  Similarity=0.201  Sum_probs=85.4

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcccccccc-ccch-hhhcc-ccccc------cc----cccCCCCC
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSC-QSSA-LAVKN-GIIDD------LV----DEKGCHED  242 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~-~~~~-~~~~~-~~~~~------~~----~~~~~~~~  242 (370)
                      .=+.|+|||.|.||.-+|+.+...|++|+.+|++.+....... .+++ .++.. +..+.      ++    +......+
T Consensus        10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tn   89 (298)
T KOG2304|consen   10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTN   89 (298)
T ss_pred             cccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCC
Confidence            4468999999999999999999999999999988654211100 0000 00000 00000      00    00001245


Q ss_pred             HHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCC
Q 017490          243 IFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLV-NIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPND  321 (370)
Q Consensus       243 l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailI-N~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~  321 (370)
                      +.++.+.+|+|+=++-.+-+.+.=+-++.=...|+.++|. |+|.   +...++..+++.... .+||-.|.+-|.    
T Consensus        90 v~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSS---l~lt~ia~~~~~~sr-f~GlHFfNPvPv----  161 (298)
T KOG2304|consen   90 VSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSS---LSLTDIASATQRPSR-FAGLHFFNPVPV----  161 (298)
T ss_pred             HHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccc---eeHHHHHhhccChhh-hceeeccCCchh----
Confidence            5666667777765544333322212222223357776664 4443   456677777776544 478998887663    


Q ss_pred             cccCCCceEEccCCCCccH
Q 017490          322 PILKFKNVLITPHVGGVTE  340 (370)
Q Consensus       322 pL~~~~nvilTPHia~~t~  340 (370)
                        .++=-|+=|+-.+--|.
T Consensus       162 --MKLvEVir~~~TS~eTf  178 (298)
T KOG2304|consen  162 --MKLVEVIRTDDTSDETF  178 (298)
T ss_pred             --HHHhhhhcCCCCCHHHH
Confidence              33334555665544333

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=96.06  E-value=0.0079  Score=60.11  Aligned_cols=115  Identities=20%  Similarity=0.211  Sum_probs=66.8

Q ss_pred             HHHHHHhcccCCCCcccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccc----cch----------
Q 017490          158 MRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQ----SSA----------  222 (370)
Q Consensus       158 ~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~----~~~----------  222 (370)
                      |.++++-..|+......|.+++|.|+|+|.+|..+++.|...|. ++..+|...-...--.++    ..+          
T Consensus        22 y~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~  101 (370)
T PRK05600         22 TARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAA  101 (370)
T ss_pred             hhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHH
Confidence            44444444566545567999999999999999999999999997 788888753211000000    000          


Q ss_pred             --hhhcccccc-ccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHh
Q 017490          223 --LAVKNGIID-DLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLS  273 (370)
Q Consensus       223 --~~~~~~~~~-~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~  273 (370)
                        +.-.+..+. +.........+++++++++|+|+.|+- +.+++.+++....+
T Consensus       102 ~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~DlVid~~D-n~~~r~~in~~~~~  154 (370)
T PRK05600        102 ERLKEIQPDIRVNALRERLTAENAVELLNGVDLVLDGSD-SFATKFLVADAAEI  154 (370)
T ss_pred             HHHHHHCCCCeeEEeeeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH
Confidence              000000000 000000012346678889998877664 56788888765443

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.05  E-value=0.0076  Score=59.90  Aligned_cols=51  Identities=22%  Similarity=0.279  Sum_probs=39.8

Q ss_pred             HHHHhcccCCCCcccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCC
Q 017490          160 MAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  210 (370)
Q Consensus       160 ~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~  210 (370)
                      ++++-..|+......|.+++|.|+|+|.+|..+|+.|...|. ++..+|...
T Consensus        11 Rq~~l~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         11 RQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             heechhhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            333333455444567999999999999999999999998888 688888654

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]

Probab=96.05  E-value=0.0047  Score=59.37  Aligned_cols=107  Identities=22%  Similarity=0.315  Sum_probs=70.5

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCC------------
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCH------------  240 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  240 (370)
                      -..++.++.++|+|.+|...+......|+-|..+|-.+...+........+-..+    +. ...+.|            
T Consensus       160 gtv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~----~e-e~~gGYAk~ms~~~~~~q  234 (356)
T COG3288         160 GTVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVE----DE-ESAGGYAKEMSEEFIAKQ  234 (356)
T ss_pred             ccccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhccccccccc----cc-ccCCCccccCCHHHHHHH
Confidence            4567778899999999999999999999999999865543211111100000000    00 011111            


Q ss_pred             -CCHHHHHhcCCEEEEe--ccCChhhhcccCHHHHhcCCCCcEEEEcC
Q 017490          241 -EDIFEFASKADVVVCC--LSLNKQTAGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       241 -~~l~ell~~aDiV~l~--lP~t~~t~~li~~~~l~~mk~gailIN~s  285 (370)
                       +-+.+..++.|||+..  +|..|. ..|+.++..+.||||+++||.+
T Consensus       235 ~~~~a~~~~~~DivITTAlIPGrpA-P~Lvt~~mv~sMkpGSViVDlA  281 (356)
T COG3288         235 AELVAEQAKEVDIVITTALIPGRPA-PKLVTAEMVASMKPGSVIVDLA  281 (356)
T ss_pred             HHHHHHHhcCCCEEEEecccCCCCC-chhhHHHHHHhcCCCcEEEEeh
Confidence             1234567889999886  565443 4488999999999999999986

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=96.03  E-value=0.12  Score=49.56  Aligned_cols=165  Identities=19%  Similarity=0.245  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEecCchhHHHHHHhccC----CC-------EEEEEcC
Q 017490          140 CAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPF----GV-------KIIATKR  208 (370)
Q Consensus       140 vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~----G~-------~V~~~dr  208 (370)
                      +|-.+++-+++.+|-.                ++.|.+.++.|+|.|.-|..+|+.+...    |.       +++.+|+
T Consensus         4 Ta~V~lAgllnAlk~~----------------g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~   67 (279)
T cd05312           4 TAAVALAGLLAALRIT----------------GKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDS   67 (279)
T ss_pred             HHHHHHHHHHHHHHHh----------------CCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcC
Confidence            4556778888888742                5678899999999999999999998776    77       7999998


Q ss_pred             CCccccccccccchhhhccccccccccccC--CCCCHHHHHh--cCCEEEEeccCChhhhcccCHHHHhcCC---CCcEE
Q 017490          209 SWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS--KADVVVCCLSLNKQTAGIVNKSFLSSMK---KGSLL  281 (370)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~--~aDiV~l~lP~t~~t~~li~~~~l~~mk---~gail  281 (370)
                      +.--...-.+    +....   ..+.....  ...+|.|+++  ++|+++-+-    ...++|+++.++.|.   +..++
T Consensus        68 ~Gll~~~r~~----l~~~~---~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S----~~~g~ft~evv~~Ma~~~~~PII  136 (279)
T cd05312          68 KGLLTKDRKD----LTPFK---KPFARKDEEKEGKSLLEVVKAVKPTVLIGLS----GVGGAFTEEVVRAMAKSNERPII  136 (279)
T ss_pred             CCeEeCCCCc----chHHH---HHHHhhcCcccCCCHHHHHHhcCCCEEEEeC----CCCCCCCHHHHHHHHhcCCCCEE
Confidence            6421100000    00000   01111111  2358999999  889887652    134799999999998   89999


Q ss_pred             EEcCCCcccCHHHHHHHHH--hCC-ceEEEEecCCCCCCCC---CC---cccCCCceEEccCCCC
Q 017490          282 VNIARGGLLDYEAIAHYLE--CGH-LGGLGIDVAWTEPFDP---ND---PILKFKNVLITPHVGG  337 (370)
Q Consensus       282 IN~sRg~~vd~~aL~~aL~--~g~-i~ga~lDV~~~EPl~~---~~---pL~~~~nvilTPHia~  337 (370)
                      .=.|+...--|-.-.++.+  +|+ |.+.|.      |+++   +.   .-=...|+++-|=++-
T Consensus       137 FaLSNPt~~~E~~pe~a~~~t~G~ai~ATGs------Pf~pv~~~Gr~~~p~Q~NN~~iFPGigl  195 (279)
T cd05312         137 FALSNPTSKAECTAEDAYKWTDGRALFASGS------PFPPVEYNGKTYVPGQGNNAYIFPGIGL  195 (279)
T ss_pred             EECCCcCCccccCHHHHHHhhcCCEEEEeCC------CCCCeeeCCeEecCCCcceeeeccchhh
Confidence            9999987643433334444  354 443332      2221   11   1124678899896654

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.96  E-value=0.054  Score=52.94  Aligned_cols=111  Identities=11%  Similarity=0.070  Sum_probs=70.7

Q ss_pred             hhHHHHHHhccCCCEEEEEcCCCcccc-------cccc-ccchhh--hcccccc-----ccccccCCCC--CHHHHHhcC
Q 017490          188 IGVELAKRLRPFGVKIIATKRSWASHS-------QVSC-QSSALA--VKNGIID-----DLVDEKGCHE--DIFEFASKA  250 (370)
Q Consensus       188 IG~~vA~~l~~~G~~V~~~dr~~~~~~-------~~~~-~~~~~~--~~~~~~~-----~~~~~~~~~~--~l~ell~~a  250 (370)
                      ||..+|..+...|++|..||+++....       .... ....+.  ...+.+.     ..........  +..+.+++|
T Consensus         1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a   80 (314)
T PRK08269          1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA   80 (314)
T ss_pred             CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence            688999999989999999999874210       0000 000000  0000000     0000011111  356788999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE  300 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~  300 (370)
                      |+|+-++|.+.+.+.-+-++..+.++++++|  +|..+.+....|.+.++
T Consensus        81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la~~~~  128 (314)
T PRK08269         81 DLVFEAVPEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQRHVA  128 (314)
T ss_pred             CEEEECCcCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHHhhcC
Confidence            9999999999998887777777889999998  55566677788888774

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=95.95  E-value=0.016  Score=57.38  Aligned_cols=96  Identities=26%  Similarity=0.246  Sum_probs=54.7

Q ss_pred             ceEEEEec-CchhHHHHHHhccC-CCEEEE-EcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEE
Q 017490          178 KTVFILGF-GNIGVELAKRLRPF-GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  254 (370)
Q Consensus       178 ~tvGIiGl-G~IG~~vA~~l~~~-G~~V~~-~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  254 (370)
                      ++|+|+|. |.+|+.+++.|... ++++.. ++++.........   .+  +.  ............+.++++.++|+|+
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~---~~--~~--l~~~~~~~~~~~~~~~~~~~~DvVf   73 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSE---VH--PH--LRGLVDLNLEPIDEEEIAEDADVVF   73 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHH---hC--cc--ccccCCceeecCCHHHhhcCCCEEE
Confidence            37999998 99999999999876 678774 4544321110000   00  00  0000000001124556667899999


Q ss_pred             EeccCChhhhcccCHHHHhc-CCCCcEEEEcCC
Q 017490          255 CCLSLNKQTAGIVNKSFLSS-MKKGSLLVNIAR  286 (370)
Q Consensus       255 l~lP~t~~t~~li~~~~l~~-mk~gailIN~sR  286 (370)
                      +|+|.. ...     +.... .+.|..+|+.|-
T Consensus        74 ~alP~~-~s~-----~~~~~~~~~G~~VIDlS~  100 (346)
T TIGR01850        74 LALPHG-VSA-----ELAPELLAAGVKVIDLSA  100 (346)
T ss_pred             ECCCch-HHH-----HHHHHHHhCCCEEEeCCh
Confidence            999954 222     22222 256889999883

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=95.95  E-value=0.093  Score=49.64  Aligned_cols=171  Identities=13%  Similarity=0.105  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEecCchhHHHHHHhccCCC-----------EEEEEcC
Q 017490          140 CAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-----------KIIATKR  208 (370)
Q Consensus       140 vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-----------~V~~~dr  208 (370)
                      +|--+++-+++.+|-.                ++.|.+.++.|+|.|..|-.+|+.+...+.           +++.+|+
T Consensus         4 TaaV~lAgllnAlk~~----------------g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~   67 (254)
T cd00762           4 TASVAVAGLLAALKVT----------------KKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDR   67 (254)
T ss_pred             hHHHHHHHHHHHHHHh----------------CCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECC
Confidence            4556777888887732                567899999999999999999999987665           6888887


Q ss_pred             CCccccccccccchhhhccccccccccccCCCCCHHHHHh--cCCEEEEeccCChhhhcccCHHHHhcCC---CCcEEEE
Q 017490          209 SWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADVVVCCLSLNKQTAGIVNKSFLSSMK---KGSLLVN  283 (370)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l~lP~t~~t~~li~~~~l~~mk---~gailIN  283 (370)
                      ..--...-.+. ..+.   ....+.........+|.|+++  +.|+++-.-    ...++|.++.++.|.   +..++.=
T Consensus        68 ~Gll~~~r~~l-~~~~---~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFa  139 (254)
T cd00762          68 KGLLVKNRKET-CPNE---YHLARFANPERESGDLEDAVEAAKPDFLIGVS----RVGGAFTPEVIRAXAEINERPVIFA  139 (254)
T ss_pred             CCeEeCCCCcc-CHHH---HHHHHHcCcccccCCHHHHHHhhCCCEEEEeC----CCCCCCCHHHHHHHhhcCCCCEEEE
Confidence            64210000000 0000   000001111113468999999  999887642    235799999999998   8999999


Q ss_pred             cCCCcccCHHHHHHHHHh--C-CceEEEEecCCCCCCCCCC---cccCCCceEEccCCCC
Q 017490          284 IARGGLLDYEAIAHYLEC--G-HLGGLGIDVAWTEPFDPND---PILKFKNVLITPHVGG  337 (370)
Q Consensus       284 ~sRg~~vd~~aL~~aL~~--g-~i~ga~lDV~~~EPl~~~~---pL~~~~nvilTPHia~  337 (370)
                      .|+...--|-.-.++.+-  | .|.+-|.-.+..+-   +.   ..=...|+++-|=++-
T Consensus       140 LSNPt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~---~g~~~~~~Q~NN~~iFPGigl  196 (254)
T cd00762         140 LSNPTSKAECTAEEAYTATEGRAIFASGSPFHPVEL---NGGTYKPGQGNNLYIFPGVAL  196 (254)
T ss_pred             CCCcCCccccCHHHHHhhcCCCEEEEECCCCCCccc---CCceeecccccceeeccchhh
Confidence            998876334333333333  3 34433322111111   11   1125788999996654

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=95.92  E-value=0.015  Score=55.39  Aligned_cols=107  Identities=20%  Similarity=0.250  Sum_probs=59.3

Q ss_pred             ceEEEEecCchhHHHHHHhccC-CCEEEE-EcCCCccccccccccchhhhcccccccccc-ccCCCCCHHHHHhcCCEEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPF-GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVV  254 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~-G~~V~~-~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~  254 (370)
                      .+|||||+|.||+.+++.+... ++++.+ +++..... ..              .+... ......+++++-.+.|+|+
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~-~~--------------~~~~~~~~~~~~d~~~l~~~~DvVv   66 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSID-AV--------------RRALGEAVRVVSSVDALPQRPDLVV   66 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHH-HH--------------hhhhccCCeeeCCHHHhccCCCEEE
Confidence            4799999999999999998765 566543 33322110 00              00000 0112457777745689999


Q ss_pred             EeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHhCCc
Q 017490          255 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDY---EAIAHYLECGHL  304 (370)
Q Consensus       255 l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~---~aL~~aL~~g~i  304 (370)
                      .|.|.. ....    -....++.|.-++-.+-|...|.   +.|.++.+++..
T Consensus        67 e~t~~~-~~~e----~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~  114 (265)
T PRK13303         67 ECAGHA-ALKE----HVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGA  114 (265)
T ss_pred             ECCCHH-HHHH----HHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCC
Confidence            998843 2211    12223445555555555544443   446666665544

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=95.92  E-value=0.012  Score=49.05  Aligned_cols=95  Identities=21%  Similarity=0.286  Sum_probs=51.5

Q ss_pred             eEEEEe-cCchhHHHHHHhcc-CCCEE-EEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEE
Q 017490          179 TVFILG-FGNIGVELAKRLRP-FGVKI-IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVV  254 (370)
Q Consensus       179 tvGIiG-lG~IG~~vA~~l~~-~G~~V-~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~  254 (370)
                      +||||| .|.+|+.+.++|.. ..+++ .++.++.........   .+..+.+     ..... ...+. +.+.++|+|+
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~---~~~~~~~-----~~~~~~~~~~~-~~~~~~Dvvf   71 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSE---VFPHPKG-----FEDLSVEDADP-EELSDVDVVF   71 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHH---TTGGGTT-----TEEEBEEETSG-HHHTTESEEE
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeeh---hcccccc-----ccceeEeecch-hHhhcCCEEE
Confidence            699999 99999999999875 45564 445544312111000   0000000     00000 11123 4459999999


Q ss_pred             EeccCChhhhcccCHHHHhcCCCCcEEEEcCCC
Q 017490          255 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       255 l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg  287 (370)
                      +|+|.... ..+. ...   +++|..+|+.|..
T Consensus        72 ~a~~~~~~-~~~~-~~~---~~~g~~ViD~s~~   99 (121)
T PF01118_consen   72 LALPHGAS-KELA-PKL---LKAGIKVIDLSGD   99 (121)
T ss_dssp             E-SCHHHH-HHHH-HHH---HHTTSEEEESSST
T ss_pred             ecCchhHH-HHHH-HHH---hhCCcEEEeCCHH
Confidence            99985432 2221 112   5789999998753

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=95.89  E-value=0.011  Score=48.23  Aligned_cols=81  Identities=16%  Similarity=0.151  Sum_probs=52.6

Q ss_pred             hhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccc--cccCCCCCHHHHHhcCCEEEEeccCChhhhc
Q 017490          188 IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV--DEKGCHEDIFEFASKADVVVCCLSLNKQTAG  265 (370)
Q Consensus       188 IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~  265 (370)
                      -+..+++.|+..|++|.+||+........               ...  .......++++.++.+|+|+++.+- ++-+.
T Consensus        18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h-~~f~~   81 (106)
T PF03720_consen   18 PALELIEELKERGAEVSVYDPYVDEEEIK---------------ELGKLEGVEVCDDLEEALKGADAVVLATDH-DEFRE   81 (106)
T ss_dssp             HHHHHHHHHHHTT-EEEEE-TTSHHHHHH---------------HHCHHHCEEEESSHHHHHTTESEEEESS---GGGGC
T ss_pred             HHHHHHHHHHHCCCEEEEECCccChHHHH---------------hhCCccceEEecCHHHHhcCCCEEEEEecC-HHHhc
Confidence            45788999999999999999986542110               000  0011235789999999999999874 44444


Q ss_pred             ccCHHHHhcCCCCcEEEEc
Q 017490          266 IVNKSFLSSMKKGSLLVNI  284 (370)
Q Consensus       266 li~~~~l~~mk~gailIN~  284 (370)
                      +--.+..+.|+++.++|++
T Consensus        82 l~~~~~~~~~~~~~~iiD~  100 (106)
T PF03720_consen   82 LDWEEIAKLMRKPPVIIDG  100 (106)
T ss_dssp             CGHHHHHHHSCSSEEEEES
T ss_pred             cCHHHHHHhcCCCCEEEEC
Confidence            3234455678899999997

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=95.88  E-value=0.072  Score=51.59  Aligned_cols=106  Identities=13%  Similarity=0.120  Sum_probs=69.7

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEE
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  255 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  255 (370)
                      .|++++|||-=.=-..++++|.+.|++|..+.-......                ...+.   ...+.+++++++|+|++
T Consensus         1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~~----------------~~g~~---~~~~~~~~~~~ad~ii~   61 (296)
T PRK08306          1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDHG----------------FTGAT---KSSSLEEALSDVDVIIL   61 (296)
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccccccc----------------cCCce---eeccHHHHhccCCEEEE
Confidence            378999999888888999999999999987542211100                00000   12356788999999999


Q ss_pred             eccCChhh---hc-------ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          256 CLSLNKQT---AG-------IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       256 ~lP~t~~t---~~-------li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      -+|.+.+.   +.       -++.+.++.||+|.+++ ++.+.   .. +-+.+++..+.
T Consensus        62 ~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~---~~-~~~~~~~~gi~  116 (296)
T PRK08306         62 PVPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIAN---PY-LKELAKETNRK  116 (296)
T ss_pred             CCccccCCceeeccccccCCcchHHHHHhcCCCCEEE-EecCC---HH-HHHHHHHCCCe
Confidence            88864322   11       13578999999998544 34432   22 44666777776

>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=95.88  E-value=0.052  Score=52.86  Aligned_cols=65  Identities=25%  Similarity=0.281  Sum_probs=48.3

Q ss_pred             cccCceEEEEec---CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490          174 TLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  250 (370)
Q Consensus       174 ~l~g~tvGIiGl---G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  250 (370)
                      .+.|++|++||=   +++.++++..+..+|++|....+..-..                 .. ........++++.++.+
T Consensus       153 ~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~-----------------~~-~~~~~~~~d~~ea~~~a  214 (305)
T PRK00856        153 RLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLP-----------------EG-MPEYGVHTDLDEVIEDA  214 (305)
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCc-----------------cc-ccceEEECCHHHHhCCC
Confidence            378999999997   5899999999999999999987643210                 01 11111346899999999


Q ss_pred             CEEEEe
Q 017490          251 DVVVCC  256 (370)
Q Consensus       251 DiV~l~  256 (370)
                      |+|...
T Consensus       215 Dvvyt~  220 (305)
T PRK00856        215 DVVMML  220 (305)
T ss_pred             CEEEEC
Confidence            998774

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=95.85  E-value=0.0078  Score=55.96  Aligned_cols=76  Identities=20%  Similarity=0.279  Sum_probs=48.5

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHH-HhcCCEEEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEF-ASKADVVVC  255 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~el-l~~aDiV~l  255 (370)
                      +++.|+|+|.+|..+|+.|...|++|+.+|++..........  .+.      ...+...+ ...-|+++ +.++|+++.
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~--~~~------~~~v~gd~t~~~~L~~agi~~aD~vva   72 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLAD--ELD------THVVIGDATDEDVLEEAGIDDADAVVA   72 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh--hcc------eEEEEecCCCHHHHHhcCCCcCCEEEE
Confidence            578999999999999999999999999999886542110000  000      00000000 11234444 678999999


Q ss_pred             eccCCh
Q 017490          256 CLSLNK  261 (370)
Q Consensus       256 ~lP~t~  261 (370)
                      +.....
T Consensus        73 ~t~~d~   78 (225)
T COG0569          73 ATGNDE   78 (225)
T ss_pred             eeCCCH
Confidence            887543

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.85  E-value=0.015  Score=58.90  Aligned_cols=110  Identities=23%  Similarity=0.301  Sum_probs=64.8

Q ss_pred             CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEe
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  256 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  256 (370)
                      .++|.|||+|.+|.++|+.|+..|++|.++|++......               .....+. .....+....++|+|+.+
T Consensus         3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~---------------~~~~~~~-~~~~~~~~~~~~dlvV~s   66 (418)
T PRK00683          3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQS---------------CPYIHER-YLENAEEFPEQVDLVVRS   66 (418)
T ss_pred             CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccch---------------hHHHhhh-hcCCcHHHhcCCCEEEEC
Confidence            468999999999999999999999999999976432100               0000000 011233445778988777


Q ss_pred             ccCChhhh----------cccCHHH--Hhc--CCC-CcEEEEcCCCcccCHHHHHHHHHhC
Q 017490          257 LSLNKQTA----------GIVNKSF--LSS--MKK-GSLLVNIARGGLLDYEAIAHYLECG  302 (370)
Q Consensus       257 lP~t~~t~----------~li~~~~--l~~--mk~-gailIN~sRg~~vd~~aL~~aL~~g  302 (370)
                      .+..+...          .++....  +..  +.+ -.+=|--+-|..-..+-|.+.|+..
T Consensus        67 ~gi~~~~~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~  127 (418)
T PRK00683         67 PGIKKEHPWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRL  127 (418)
T ss_pred             CCCCCCcHHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHc
Confidence            65432211          1222211  111  212 2455555668877777777777753

>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=95.83  E-value=0.049  Score=47.80  Aligned_cols=103  Identities=17%  Similarity=0.152  Sum_probs=65.3

Q ss_pred             cCceEEEEe--cCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccc----cCCCCCHHHHHhc
Q 017490          176 LGKTVFILG--FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE----KGCHEDIFEFASK  249 (370)
Q Consensus       176 ~g~tvGIiG--lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~ell~~  249 (370)
                      .|++|++||  .+++.++++..+..||+++..+.+..-..+.....   +..    ..+...+    .....++++.+++
T Consensus         1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~---~~~----~~~~~~~~g~~i~~~~~~~e~l~~   73 (158)
T PF00185_consen    1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEV---LEK----AKKNAKKNGGKITITDDIEEALKG   73 (158)
T ss_dssp             TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHH---HHH----HHHHHHHHTTEEEEESSHHHHHTT
T ss_pred             CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHH---HHH----HHHHHHHhCCCeEEEeCHHHhcCC
Confidence            489999999  38999999999999999999887653111000000   000    0000011    1123689999999


Q ss_pred             CCEEEEeccCC---hh--------hhcccCHHHHhcCCCCcEEEEcC
Q 017490          250 ADVVVCCLSLN---KQ--------TAGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       250 aDiV~l~lP~t---~~--------t~~li~~~~l~~mk~gailIN~s  285 (370)
                      +|+|..-.-..   .+        ....++++.++.+|++++|.-+.
T Consensus        74 aDvvy~~~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L  120 (158)
T PF00185_consen   74 ADVVYTDRWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL  120 (158)
T ss_dssp             -SEEEEESSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred             CCEEEEcCcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence            99988764431   11        12567899999999999998874

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=95.83  E-value=0.02  Score=55.65  Aligned_cols=102  Identities=17%  Similarity=0.128  Sum_probs=59.1

Q ss_pred             ceEEEEecCchhHHHHHHhccCC--CEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  255 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G--~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  255 (370)
                      ++|+|||.|.+|+.+|..|...|  .+|..+|++........   .++.....  ...........+. +.++.||+|++
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a---~dL~~~~~--~~~~~~~i~~~~~-~~l~~aDIVIi   74 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEA---LDLEDALA--FLPSPVKIKAGDY-SDCKDADIVVI   74 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhH---hhHHHHhh--ccCCCeEEEcCCH-HHhCCCCEEEE
Confidence            47999999999999999998888  48999999765421110   00000000  0000000011233 45789999999


Q ss_pred             eccCChh---hh-ccc--CH-------HHHhcCCCCcEEEEcC
Q 017490          256 CLSLNKQ---TA-GIV--NK-------SFLSSMKKGSLLVNIA  285 (370)
Q Consensus       256 ~lP~t~~---t~-~li--~~-------~~l~~mk~gailIN~s  285 (370)
                      +......   +| .++  |.       +.+....|.+++|+++
T Consensus        75 tag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs  117 (306)
T cd05291          75 TAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS  117 (306)
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence            9764211   11 111  11       2345567789999997

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK06223 malate dehydrogenase; Reviewed

Probab=95.83  E-value=0.016  Score=56.12  Aligned_cols=125  Identities=16%  Similarity=0.113  Sum_probs=66.3

Q ss_pred             ceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhcccccccccc-ccCCCCCHHHHHhcCCEEEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVVC  255 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~l  255 (370)
                      ++|+|||.|.+|..+|..+...|. +|..+|+....... ..  .++.....  ..... ......+. +.++.||+|++
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~-~~--~dl~~~~~--~~~~~~~i~~~~d~-~~~~~aDiVii   76 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQG-KA--LDIAEAAP--VEGFDTKITGTNDY-EDIAGSDVVVI   76 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHH-HH--HHHHhhhh--hcCCCcEEEeCCCH-HHHCCCCEEEE
Confidence            589999999999999999887654 99999986543211 00  00000000  00000 00012345 45799999999


Q ss_pred             ecc--CChh---------hhcccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHhCCceEEE
Q 017490          256 CLS--LNKQ---------TAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHY--LECGHLGGLG  308 (370)
Q Consensus       256 ~lP--~t~~---------t~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~a--L~~g~i~ga~  308 (370)
                      +..  ..+.         +..++.  .+.+...-+.+++|+.+...-+-...+.+.  +...++.|.+
T Consensus        77 ~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~g  144 (307)
T PRK06223         77 TAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGMA  144 (307)
T ss_pred             CCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEeC
Confidence            863  2211         111111  112333346788888865543444444442  1124566654

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=95.82  E-value=0.11  Score=52.22  Aligned_cols=193  Identities=20%  Similarity=0.159  Sum_probs=116.7

Q ss_pred             cCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEecCchhHHHHHHhccCC
Q 017490          121 RCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFG  200 (370)
Q Consensus       121 ~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G  200 (370)
                      +..|+|.|.-      -..+|=.+++.+++.+|-.                |+.|+..+|.+.|.|.-|-.+++.+.+.|
T Consensus       165 ~~~IPvFhDD------qqGTaiv~lA~llnalk~~----------------gk~l~d~kiv~~GAGAAgiaia~~l~~~g  222 (432)
T COG0281         165 RMNIPVFHDD------QQGTAIVTLAALLNALKLT----------------GKKLKDQKIVINGAGAAGIAIADLLVAAG  222 (432)
T ss_pred             cCCCCccccc------ccHHHHHHHHHHHHHHHHh----------------CCCccceEEEEeCCcHHHHHHHHHHHHhC
Confidence            4468888852      1346777888888888642                68899999999999999999999999999


Q ss_pred             C---EEEEEcCCCcccccccc-ccchhhhcccccccccc-ccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcC
Q 017490          201 V---KIIATKRSWASHSQVSC-QSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSM  275 (370)
Q Consensus       201 ~---~V~~~dr~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~m  275 (370)
                      +   +|+.+|+..--...-.+ ....+.+      .... ....... ++.+..+|+++-+   +  ..+.+.++.++.|
T Consensus       223 ~~~~~i~~~D~~G~l~~~r~~~~~~~~k~------~~a~~~~~~~~~-~~~~~~adv~iG~---S--~~G~~t~e~V~~M  290 (432)
T COG0281         223 VKEENIFVVDRKGLLYDGREDLTMNQKKY------AKAIEDTGERTL-DLALAGADVLIGV---S--GVGAFTEEMVKEM  290 (432)
T ss_pred             CCcccEEEEecCCcccCCCcccccchHHH------HHHHhhhccccc-cccccCCCEEEEc---C--CCCCcCHHHHHHh
Confidence            9   59999986432100000 0000100      0110 1111111 4478899988765   2  2289999999999


Q ss_pred             CCCcEEEEcCCCcccCHHHHHHHHHhC-CceEEEEecCCCCCCCCCCcccCCCceEEccCCCCccHH-----HHHHHHHH
Q 017490          276 KKGSLLVNIARGGLLDYEAIAHYLECG-HLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEH-----SYRSMAKV  349 (370)
Q Consensus       276 k~gailIN~sRg~~vd~~aL~~aL~~g-~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~-----~~~~~~~~  349 (370)
                      .+..++.=.|....--..+.+..-..| .|-+-      .-|..|+    +.-|+++-|-+.--.-.     --+.|.-.
T Consensus       291 a~~PiIfalaNP~pEi~Pe~a~~~~~~aaivaT------Grsd~Pn----QvNNvL~FPgIfrGaLd~rA~~ItdeM~~A  360 (432)
T COG0281         291 AKHPIIFALANPTPEITPEDAKEWGDGAAIVAT------GRSDYPN----QVNNVLIFPGIFRGALDVRAKTITDEMKIA  360 (432)
T ss_pred             ccCCEEeecCCCCccCCHHHHhhcCCCCEEEEe------CCCCCcc----cccceeEcchhhhhhHhhccccCCHHHHHH
Confidence            999999999886632222222222222 33221      1122222    77899999987643211     12345555


Q ss_pred             HHHHHHHH
Q 017490          350 VGDVALQL  357 (370)
Q Consensus       350 ~~~ni~~~  357 (370)
                      +++.|-.+
T Consensus       361 Aa~AiA~~  368 (432)
T COG0281         361 AAEAIADL  368 (432)
T ss_pred             HHHHHHhh
Confidence            55555444

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=95.75  E-value=0.05  Score=56.15  Aligned_cols=119  Identities=16%  Similarity=0.171  Sum_probs=69.5

Q ss_pred             cccCceEEEEec----------CchhHHHHHHhccCCCEEEEEcCCCccccccccc---cchhhhcc--cccc-cccccc
Q 017490          174 TLLGKTVFILGF----------GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ---SSALAVKN--GIID-DLVDEK  237 (370)
Q Consensus       174 ~l~g~tvGIiGl----------G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~---~~~~~~~~--~~~~-~~~~~~  237 (370)
                      .+.|++|+|+|+          ..-...+++.|...|.+|.+||+...........   ..++.++.  ++.. ......
T Consensus       321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (473)
T PLN02353        321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV  400 (473)
T ss_pred             ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce
Confidence            589999999998          4577899999999999999999974331000000   00000000  0000 000000


Q ss_pred             CCCCCHHHHHhcCCEEEEeccCChhhhcccCHH-HHhcCCCCcEEEEcCCCcccCHHHHH
Q 017490          238 GCHEDIFEFASKADVVVCCLSLNKQTAGIVNKS-FLSSMKKGSLLVNIARGGLLDYEAIA  296 (370)
Q Consensus       238 ~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~-~l~~mk~gailIN~sRg~~vd~~aL~  296 (370)
                      ....++++.++.||+|+++.+.. +.+.+ +-+ ..+.|++..+++|. |+ ++|.+.+.
T Consensus       401 ~~~~~~~~a~~~aD~vvi~t~~~-ef~~l-~~~~~~~~m~~~~~viD~-rn-~l~~~~~~  456 (473)
T PLN02353        401 SVVWDAYEATKGAHGICILTEWD-EFKTL-DYQKIYDNMQKPAFVFDG-RN-VLDHEKLR  456 (473)
T ss_pred             eeeCCHHHHhcCCCEEEECCCCh-Hhccc-CHHHHHHhccCCCEEEEC-CC-CCCHHHHH
Confidence            11235678899999999998743 34433 433 35567766689985 43 45655543

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=95.73  E-value=0.025  Score=54.40  Aligned_cols=100  Identities=22%  Similarity=0.346  Sum_probs=64.1

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC---CCCCHHHH--
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEF--  246 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~el--  246 (370)
                      ....|+++.|+|.|..+++++..|+..|+ +|.+++|+..+...-.              +...+.+   ....+.++  
T Consensus       122 ~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La--------------~~~~~~~~~~~~~~~~~~~~  187 (283)
T COG0169         122 VDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELA--------------DLFGELGAAVEAAALADLEG  187 (283)
T ss_pred             cccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH--------------HHhhhccccccccccccccc
Confidence            45679999999999999999999999996 7999999876521111              1111111   01112111  


Q ss_pred             HhcCCEEEEeccCChhhh---cccCHHHHhcCCCCcEEEEcCCCcc
Q 017490          247 ASKADVVVCCLSLNKQTA---GIVNKSFLSSMKKGSLLVNIARGGL  289 (370)
Q Consensus       247 l~~aDiV~l~lP~t~~t~---~li~~~~l~~mk~gailIN~sRg~~  289 (370)
                      +.++|+|+.++|.--.-.   .+++   ...++++.++.++--.+.
T Consensus       188 ~~~~dliINaTp~Gm~~~~~~~~~~---~~~l~~~~~v~D~vY~P~  230 (283)
T COG0169         188 LEEADLLINATPVGMAGPEGDSPVP---AELLPKGAIVYDVVYNPL  230 (283)
T ss_pred             ccccCEEEECCCCCCCCCCCCCCCc---HHhcCcCCEEEEeccCCC
Confidence            116999999999643321   1334   445777887777755543

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.72  E-value=0.015  Score=58.19  Aligned_cols=43  Identities=26%  Similarity=0.380  Sum_probs=36.1

Q ss_pred             cCCCCcccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCC
Q 017490          167 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  209 (370)
Q Consensus       167 ~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~  209 (370)
                      |+......+.+++|.|+|+|.+|..+++.|...|. ++..+|+.
T Consensus       125 ~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        125 VGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             cCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            43323356899999999999999999999999998 79999876

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=95.71  E-value=0.019  Score=60.13  Aligned_cols=38  Identities=26%  Similarity=0.531  Sum_probs=34.9

Q ss_pred             cccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          174 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      .+.+|++.|+|.|.+|++++..|...|++|++++|+..
T Consensus       376 ~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e  413 (529)
T PLN02520        376 PLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYE  413 (529)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            57899999999999999999999999999999998754

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=95.71  E-value=0.15  Score=55.31  Aligned_cols=134  Identities=16%  Similarity=0.180  Sum_probs=94.9

Q ss_pred             CCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEecCchhHHHHHHhccCCC
Q 017490          122 CGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV  201 (370)
Q Consensus       122 ~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~  201 (370)
                      ..|+|.|. +-     ..+|=-+++.+++.+|-.                ++.+...++.|.|.|.-|..+|+.+...|.
T Consensus       152 ~~ip~f~D-D~-----~GTa~v~lA~l~na~~~~----------------~~~~~~~~iv~~GaGaag~~~a~~l~~~G~  209 (752)
T PRK07232        152 MDIPVFHD-DQ-----HGTAIISAAALLNALELV----------------GKKIEDVKIVVSGAGAAAIACLNLLVALGA  209 (752)
T ss_pred             cCCCeecc-cc-----chHHHHHHHHHHHHHHHh----------------CCChhhcEEEEECccHHHHHHHHHHHHcCC
Confidence            36888886 22     346777788888888742                577899999999999999999999998898


Q ss_pred             ---EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCC
Q 017490          202 ---KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKG  278 (370)
Q Consensus       202 ---~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~g  278 (370)
                         +++.+|+..--...-..   .+..+.   ..++.. ....+|.|+++.+|+++-. .    +.++++++.++.|.+.
T Consensus       210 ~~~~i~~~D~~G~i~~~r~~---~~~~~k---~~~a~~-~~~~~l~~~i~~~~v~iG~-s----~~g~~~~~~v~~M~~~  277 (752)
T PRK07232        210 KKENIIVCDSKGVIYKGRTE---GMDEWK---AAYAVD-TDARTLAEAIEGADVFLGL-S----AAGVLTPEMVKSMADN  277 (752)
T ss_pred             CcccEEEEcCCCeecCCCcc---cccHHH---HHHhcc-CCCCCHHHHHcCCCEEEEc-C----CCCCCCHHHHHHhccC
Confidence               79999976421100000   000000   011111 2235899999999987654 2    2589999999999999


Q ss_pred             cEEEEcCCCcc
Q 017490          279 SLLVNIARGGL  289 (370)
Q Consensus       279 ailIN~sRg~~  289 (370)
                      .++.=.|....
T Consensus       278 piifalsNP~~  288 (752)
T PRK07232        278 PIIFALANPDP  288 (752)
T ss_pred             CEEEecCCCCc
Confidence            99999998775

>PRK12862 malic enzyme; Reviewed

Probab=95.67  E-value=0.14  Score=55.73  Aligned_cols=133  Identities=17%  Similarity=0.152  Sum_probs=94.7

Q ss_pred             CeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEecCchhHHHHHHhccCCC-
Q 017490          123 GIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-  201 (370)
Q Consensus       123 gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-  201 (370)
                      .|+|.|. +-     ..+|=.+++.+++.+|-.                ++.+...+|.|.|.|.-|..+|+.+...|. 
T Consensus       161 ~ip~f~D-D~-----~GTa~v~la~l~~a~~~~----------------~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~  218 (763)
T PRK12862        161 KIPVFHD-DQ-----HGTAIIVAAALLNGLKLV----------------GKDIEDVKLVASGAGAAALACLDLLVSLGVK  218 (763)
T ss_pred             CCceEec-Cc-----ccHHHHHHHHHHHHHHHh----------------CCChhhcEEEEEChhHHHHHHHHHHHHcCCC
Confidence            6899986 22     346777888888888742                578899999999999999999999998898 


Q ss_pred             --EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCc
Q 017490          202 --KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGS  279 (370)
Q Consensus       202 --~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga  279 (370)
                        +++.+|+..--...-.+....+.      ..++.. ....+|.|+++.+|+++-. .    +.++++++.++.|.+..
T Consensus       219 ~~~i~~~D~~G~i~~~r~~~l~~~~------~~~a~~-~~~~~l~e~~~~~~v~iG~-s----~~g~~~~~~v~~M~~~p  286 (763)
T PRK12862        219 RENIWVTDIKGVVYEGRTELMDPWK------ARYAQK-TDARTLAEVIEGADVFLGL-S----AAGVLKPEMVKKMAPRP  286 (763)
T ss_pred             cccEEEEcCCCeeeCCCCccccHHH------HHHhhh-cccCCHHHHHcCCCEEEEc-C----CCCCCCHHHHHHhccCC
Confidence              79999975421000000000000      011111 1235899999999988754 2    25899999999999999


Q ss_pred             EEEEcCCCcc
Q 017490          280 LLVNIARGGL  289 (370)
Q Consensus       280 ilIN~sRg~~  289 (370)
                      ++.=.|....
T Consensus       287 iifalsNP~~  296 (763)
T PRK12862        287 LIFALANPTP  296 (763)
T ss_pred             EEEeCCCCcc
Confidence            9999998775

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=95.66  E-value=0.031  Score=53.87  Aligned_cols=39  Identities=23%  Similarity=0.271  Sum_probs=34.4

Q ss_pred             cccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCcc
Q 017490          174 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  212 (370)
Q Consensus       174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~  212 (370)
                      .+.|+++.|+|.|..|++++..|...|+ +|.++||+..+
T Consensus       124 ~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~k  163 (283)
T PRK14027        124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSR  163 (283)
T ss_pred             CcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHH
Confidence            3568999999999999999999998998 79999998654

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=95.64  E-value=0.038  Score=53.37  Aligned_cols=39  Identities=23%  Similarity=0.255  Sum_probs=34.2

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCc
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  211 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~  211 (370)
                      ..+.|+++.|+|.|..+++++..+...|+ +|.+++|+..
T Consensus       120 ~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~  159 (288)
T PRK12749        120 FDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE  159 (288)
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence            35788999999999999999998888887 7999999853

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=95.58  E-value=0.018  Score=57.85  Aligned_cols=103  Identities=20%  Similarity=0.296  Sum_probs=61.7

Q ss_pred             cCceEEEEec-CchhHHHHHHhccC-CCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCCCCHHH-HHhcCC
Q 017490          176 LGKTVFILGF-GNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFE-FASKAD  251 (370)
Q Consensus       176 ~g~tvGIiGl-G~IG~~vA~~l~~~-G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~e-ll~~aD  251 (370)
                      .-++|+|+|. |.+|+++.+.|... +++|..+.+..........     .++     .+.. ......+++. .++++|
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~-----~~~-----~l~~~~~~~~~~~~~~~~~~~D  106 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGS-----VFP-----HLITQDLPNLVAVKDADFSDVD  106 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchh-----hCc-----cccCccccceecCCHHHhcCCC
Confidence            4568999996 99999999999876 7788877654322110000     000     0000 0001122222 257899


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHH
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEA  294 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~a  294 (370)
                      +|++++|.. ..     .+....|+.|..+|+.|.....+.++
T Consensus       107 vVf~Alp~~-~s-----~~i~~~~~~g~~VIDlSs~fRl~~~~  143 (381)
T PLN02968        107 AVFCCLPHG-TT-----QEIIKALPKDLKIVDLSADFRLRDIA  143 (381)
T ss_pred             EEEEcCCHH-HH-----HHHHHHHhCCCEEEEcCchhccCCcc
Confidence            999999853 22     34444456789999999665555543

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=95.55  E-value=0.042  Score=46.12  Aligned_cols=106  Identities=22%  Similarity=0.175  Sum_probs=57.3

Q ss_pred             eEEEEec-CchhHHHHHHhcc-CCCEE-EEEcCCCccccccccccchhhhccccccccc--cccC--CCCCHHHHHhcCC
Q 017490          179 TVFILGF-GNIGVELAKRLRP-FGVKI-IATKRSWASHSQVSCQSSALAVKNGIIDDLV--DEKG--CHEDIFEFASKAD  251 (370)
Q Consensus       179 tvGIiGl-G~IG~~vA~~l~~-~G~~V-~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~l~ell~~aD  251 (370)
                      +|+|+|+ |+||+.+++.+.. -|+++ -++++...+.. ..+           +.+..  ...+  ...++++++.++|
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~-g~d-----------~g~~~~~~~~~~~v~~~l~~~~~~~D   69 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKV-GKD-----------VGELAGIGPLGVPVTDDLEELLEEAD   69 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTT-TSB-----------CHHHCTSST-SSBEBS-HHHHTTH-S
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccc-cch-----------hhhhhCcCCcccccchhHHHhcccCC
Confidence            7999999 9999999999886 78884 56676652210 000           00110  0111  2478999999999


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC  301 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~  301 (370)
                      +|+-.. ..+.+...+ +..   ++.|.-+|-...|---++.+.++.+.+
T Consensus        70 VvIDfT-~p~~~~~~~-~~~---~~~g~~~ViGTTG~~~~~~~~l~~~a~  114 (124)
T PF01113_consen   70 VVIDFT-NPDAVYDNL-EYA---LKHGVPLVIGTTGFSDEQIDELEELAK  114 (124)
T ss_dssp             EEEEES--HHHHHHHH-HHH---HHHT-EEEEE-SSSHHHHHHHHHHHTT
T ss_pred             EEEEcC-ChHHhHHHH-HHH---HhCCCCEEEECCCCCHHHHHHHHHHhc
Confidence            888764 222222222 112   334666665556654334344444443

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=95.54  E-value=0.0084  Score=56.34  Aligned_cols=101  Identities=22%  Similarity=0.333  Sum_probs=58.8

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCcccccccccc----chh------------hhcccccc-ccc
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQS----SAL------------AVKNGIID-DLV  234 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~----~~~------------~~~~~~~~-~~~  234 (370)
                      ..|++++|.|+|+|.+|..+|+.|...|. ++..+|...-...--..+.    .+.            ...+..+. +..
T Consensus        20 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~   99 (240)
T TIGR02355        20 EALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPI   99 (240)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence            56899999999999999999999998887 6888886543211000000    000            00000000 000


Q ss_pred             cccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhc
Q 017490          235 DEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSS  274 (370)
Q Consensus       235 ~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~  274 (370)
                      ......+++.++++++|+|+.++- +.+++.+++....+.
T Consensus       100 ~~~i~~~~~~~~~~~~DlVvd~~D-~~~~r~~ln~~~~~~  138 (240)
T TIGR02355       100 NAKLDDAELAALIAEHDIVVDCTD-NVEVRNQLNRQCFAA  138 (240)
T ss_pred             eccCCHHHHHHHhhcCCEEEEcCC-CHHHHHHHHHHHHHc
Confidence            000011235667888998888774 567777777655443

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.53  E-value=0.018  Score=59.59  Aligned_cols=114  Identities=17%  Similarity=0.165  Sum_probs=66.6

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEE
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  254 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  254 (370)
                      +.|++|.|+|+|.+|.+.++.|+..|++|+++|...... .. ..           ...+ .........+.+.++|+|+
T Consensus        10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~-~~-l~-----------~~g~-~~~~~~~~~~~l~~~D~VV   75 (488)
T PRK03369         10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDAL-RP-HA-----------ERGV-ATVSTSDAVQQIADYALVV   75 (488)
T ss_pred             cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHH-HH-HH-----------hCCC-EEEcCcchHhHhhcCCEEE
Confidence            468999999999999999999999999999999653221 00 00           0000 0001112335567889887


Q ss_pred             EeccCChhhh----------cccCHHHHh-cC--------CCCcEEEEcCCCcccCHHHHHHHHHhC
Q 017490          255 CCLSLNKQTA----------GIVNKSFLS-SM--------KKGSLLVNIARGGLLDYEAIAHYLECG  302 (370)
Q Consensus       255 l~lP~t~~t~----------~li~~~~l~-~m--------k~gailIN~sRg~~vd~~aL~~aL~~g  302 (370)
                      ..-.-.+...          .++++-.|. .+        +...+-|--+.|..-...-+.+.|+..
T Consensus        76 ~SpGi~~~~p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~  142 (488)
T PRK03369         76 TSPGFRPTAPVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAA  142 (488)
T ss_pred             ECCCCCCCCHHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHc
Confidence            7632221111          122222221 11        112455555678888788788888763

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=95.52  E-value=0.035  Score=53.77  Aligned_cols=31  Identities=29%  Similarity=0.581  Sum_probs=27.4

Q ss_pred             eEEEEecCchhHHHHHHhccCCC-EEEEEcCC
Q 017490          179 TVFILGFGNIGVELAKRLRPFGV-KIIATKRS  209 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~  209 (370)
                      +|.|+|+|.+|..+|+.|...|. ++..+|..
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D   32 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSG   32 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence            58999999999999999999998 68888754

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=95.48  E-value=0.015  Score=51.13  Aligned_cols=71  Identities=20%  Similarity=0.244  Sum_probs=48.6

Q ss_pred             EEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCCCCHHHHHhcCCEEEEec
Q 017490          180 VFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVVCCL  257 (370)
Q Consensus       180 vGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~l~l  257 (370)
                      |.|+|. |.+|+.+++.|...|++|+++-|++.+.....    .        .+.+. .....+++.+.++.+|+|+.++
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~----~--------~~~~~~d~~d~~~~~~al~~~d~vi~~~   68 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAEDSP----G--------VEIIQGDLFDPDSVKAALKGADAVIHAA   68 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHHCT----T--------EEEEESCTTCHHHHHHHHTTSSEEEECC
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccccc----c--------cccceeeehhhhhhhhhhhhcchhhhhh
Confidence            578995 99999999999999999999999866421100    0        01110 0112235667888999999999


Q ss_pred             cCChh
Q 017490          258 SLNKQ  262 (370)
Q Consensus       258 P~t~~  262 (370)
                      +....
T Consensus        69 ~~~~~   73 (183)
T PF13460_consen   69 GPPPK   73 (183)
T ss_dssp             HSTTT
T ss_pred             hhhcc
Confidence            85433

...

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=95.47  E-value=0.027  Score=51.91  Aligned_cols=38  Identities=29%  Similarity=0.283  Sum_probs=33.9

Q ss_pred             cccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCC
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  209 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~  209 (370)
                      ...|+.++|+|||+|.+|..+|+.|...|. ++..+|..
T Consensus        23 q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         23 LEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             HHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            356889999999999999999999998888 58998876

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=95.40  E-value=0.018  Score=53.10  Aligned_cols=97  Identities=20%  Similarity=0.269  Sum_probs=61.3

Q ss_pred             cccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCC
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  251 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  251 (370)
                      ..+++|++|.|||-|.+|..=++.+...|++|+++.+...+....      +.. .+. ....+   ..-+. +.+..++
T Consensus         7 ~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~------~~~-~~~-i~~~~---~~~~~-~~~~~~~   74 (210)
T COG1648           7 FLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKA------LIE-EGK-IKWIE---REFDA-EDLDDAF   74 (210)
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHH------HHH-hcC-cchhh---cccCh-hhhcCce
Confidence            457999999999999999999999999999999998875221100      000 000 00111   01122 2344488


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcC
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~s  285 (370)
                      +|+.+++..+     +|+..+...++-.+++|+.
T Consensus        75 lviaAt~d~~-----ln~~i~~~a~~~~i~vNv~  103 (210)
T COG1648          75 LVIAATDDEE-----LNERIAKAARERRILVNVV  103 (210)
T ss_pred             EEEEeCCCHH-----HHHHHHHHHHHhCCceecc
Confidence            8888876432     4556666666666777773

>PRK12861 malic enzyme; Reviewed

Probab=95.38  E-value=0.13  Score=55.93  Aligned_cols=133  Identities=17%  Similarity=0.160  Sum_probs=94.8

Q ss_pred             CeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEecCchhHHHHHHhccCCC-
Q 017490          123 GIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-  201 (370)
Q Consensus       123 gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-  201 (370)
                      .|+|.|. +-     ..+|=.+++.+++.+|-.                ++.+...+|.|.|.|.-|..+|+.+...|. 
T Consensus       157 ~ipvf~D-D~-----qGTa~v~lA~llnal~~~----------------gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~  214 (764)
T PRK12861        157 KIPVFHD-DQ-----HGTAITVSAAFINGLKVV----------------GKSIKEVKVVTSGAGAAALACLDLLVDLGLP  214 (764)
T ss_pred             CCCeecc-cc-----chHHHHHHHHHHHHHHHh----------------CCChhHcEEEEECHhHHHHHHHHHHHHcCCC
Confidence            7999986 22     346777888888888742                577899999999999999999999999998 


Q ss_pred             --EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCc
Q 017490          202 --KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGS  279 (370)
Q Consensus       202 --~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga  279 (370)
                        +++.+|+..--...-.+....+.      ..++.. ....+|.|+++.+|+++-. .    +.++++++.++.|.+..
T Consensus       215 ~~~i~~~D~~Gli~~~r~~~l~~~k------~~~a~~-~~~~~L~eai~~advliG~-S----~~g~ft~e~v~~Ma~~P  282 (764)
T PRK12861        215 VENIWVTDIEGVVYRGRTTLMDPDK------ERFAQE-TDARTLAEVIGGADVFLGL-S----AGGVLKAEMLKAMAARP  282 (764)
T ss_pred             hhhEEEEcCCCeeeCCCcccCCHHH------HHHHhh-cCCCCHHHHHhcCCEEEEc-C----CCCCCCHHHHHHhccCC
Confidence              79999965421000000000000      011111 1336899999999987654 2    25899999999999999


Q ss_pred             EEEEcCCCcc
Q 017490          280 LLVNIARGGL  289 (370)
Q Consensus       280 ilIN~sRg~~  289 (370)
                      ++.=.|....
T Consensus       283 IIFaLsNPtp  292 (764)
T PRK12861        283 LILALANPTP  292 (764)
T ss_pred             EEEECCCCCc
Confidence            9999998765

>TIGR00670 asp_carb_tr aspartate carbamoyltransferase

Probab=95.36  E-value=0.08  Score=51.47  Aligned_cols=97  Identities=21%  Similarity=0.211  Sum_probs=62.9

Q ss_pred             cccCceEEEEecC---chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHH
Q 017490          174 TLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEF  246 (370)
Q Consensus       174 ~l~g~tvGIiGlG---~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~el  246 (370)
                      .+.|++|+++|-|   ++.++++..+..+|++|....+..-..  +..    +       .+.+.+.+    ...++++.
T Consensus       147 ~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~--~~~----~-------~~~~~~~G~~v~~~~d~~~a  213 (301)
T TIGR00670       147 RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRM--PKE----I-------LEELKAKGIKVRETESLEEV  213 (301)
T ss_pred             CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccC--CHH----H-------HHHHHHcCCEEEEECCHHHH
Confidence            3789999999985   999999999999999999987643211  100    0       00111111    24689999


Q ss_pred             HhcCCEEEEeccCC-------hh-----hhcccCHHHHhcCCCCcEEEEc
Q 017490          247 ASKADVVVCCLSLN-------KQ-----TAGIVNKSFLSSMKKGSLLVNI  284 (370)
Q Consensus       247 l~~aDiV~l~lP~t-------~~-----t~~li~~~~l~~mk~gailIN~  284 (370)
                      ++.+|+|..-- ..       ++     ...-++.+.++.+|+++++.-+
T Consensus       214 ~~~aDvvyt~~-~~~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHc  262 (301)
T TIGR00670       214 IDEADVLYVTR-IQKERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHP  262 (301)
T ss_pred             hCCCCEEEECC-ccccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECC
Confidence            99999997731 11       00     0233566677777777777644

Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=95.32  E-value=0.023  Score=57.83  Aligned_cols=75  Identities=16%  Similarity=0.156  Sum_probs=45.6

Q ss_pred             eEEEEecCchhHHHHH---Hh---ccCCCEEEEEcCCCccccccccccchhhhcccccccc-c-cccCCCCCHHHHHhcC
Q 017490          179 TVFILGFGNIGVELAK---RL---RPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDL-V-DEKGCHEDIFEFASKA  250 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~---~l---~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~l~ell~~a  250 (370)
                      +|+|||.|.+|...+-   .+   ...|.+|..||+++.........-..+      .... . .......++++.++.|
T Consensus         2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~------~~~~~~~~~I~~ttD~~eal~~A   75 (423)
T cd05297           2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKI------VEELGAPLKIEATTDRREALDGA   75 (423)
T ss_pred             eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHH------HHhcCCCeEEEEeCCHHHHhcCC
Confidence            6999999999998554   22   445779999999765421100000000      0000 0 0011235788999999


Q ss_pred             CEEEEeccC
Q 017490          251 DVVVCCLSL  259 (370)
Q Consensus       251 DiV~l~lP~  259 (370)
                      |+|+.++|.
T Consensus        76 D~Vi~ai~~   84 (423)
T cd05297          76 DFVINTIQV   84 (423)
T ss_pred             CEEEEeeEe
Confidence            999999983

linked to 3D####ucture

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=95.25  E-value=0.034  Score=58.81  Aligned_cols=39  Identities=21%  Similarity=0.247  Sum_probs=35.6

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      .....|+|||||-|..|+.+++.++.+|++|+++|.++.
T Consensus        18 ~~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~   56 (577)
T PLN02948         18 HGVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLED   56 (577)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            457889999999999999999999999999999998754

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=95.24  E-value=0.035  Score=54.46  Aligned_cols=129  Identities=13%  Similarity=0.102  Sum_probs=70.4

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEE
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  253 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  253 (370)
                      +..++|+|||.|.+|..+|..+...|. +|..+|.++..... ...  +....... ...........+. +.++.||+|
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~-~~l--d~~~~~~~-~~~~~~I~~~~d~-~~l~~aDiV   78 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQG-KAL--DISHSNVI-AGSNSKVIGTNNY-EDIAGSDVV   78 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhH-HHH--HHHhhhhc-cCCCeEEEECCCH-HHhCCCCEE
Confidence            345799999999999999999887774 89999987654210 000  00000000 0000001112455 467999999


Q ss_pred             EEeccCC--h--------------hhhcccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH--hCCceEEE
Q 017490          254 VCCLSLN--K--------------QTAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE--CGHLGGLG  308 (370)
Q Consensus       254 ~l~lP~t--~--------------~t~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~--~g~i~ga~  308 (370)
                      +++.-..  +              ++..++.  .+.+....|.+++||.+...-+-...+.+...  ..++.|.+
T Consensus        79 I~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg  153 (321)
T PTZ00082         79 IVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA  153 (321)
T ss_pred             EECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence            9976321  1              0111111  11244455778999998554333444444332  24566655

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=95.15  E-value=0.048  Score=53.33  Aligned_cols=94  Identities=21%  Similarity=0.306  Sum_probs=59.7

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHh---c
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS---K  249 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~---~  249 (370)
                      .|++|.|+|.|.+|...++.++..|+ +|++.+++.++.......             .++...  ...++++...   .
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l-------------Ga~~vi~~~~~~~~~~~~~~g~  235 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM-------------GADKLVNPQNDDLDHYKAEKGY  235 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc-------------CCcEEecCCcccHHHHhccCCC
Confidence            58899999999999999999999999 688888775442110000             000000  0123333332   2


Q ss_pred             CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCC
Q 017490          250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg  287 (370)
                      .|+|+-+.... .+   + ...++.+++|..++.++..
T Consensus       236 ~D~vid~~G~~-~~---~-~~~~~~l~~~G~iv~~G~~  268 (343)
T PRK09880        236 FDVSFEVSGHP-SS---I-NTCLEVTRAKGVMVQVGMG  268 (343)
T ss_pred             CCEEEECCCCH-HH---H-HHHHHHhhcCCEEEEEccC
Confidence            68888876532 11   1 3466778999999988753

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=95.14  E-value=0.054  Score=52.56  Aligned_cols=123  Identities=18%  Similarity=0.139  Sum_probs=70.6

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEec
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  257 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  257 (370)
                      ++|+|+|.|.||.-+|-.|...|.+|..++|...... .......+...+.  ... ..........+.....|+|++++
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~-~i~~~~Gl~i~~~--g~~-~~~~~~~~~~~~~~~~D~viv~v   78 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLA-AYQQAGGLTLVEQ--GQA-SLYAIPAETADAAEPIHRLLLAC   78 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHH-HHhhcCCeEEeeC--Ccc-eeeccCCCCcccccccCEEEEEC
Confidence            4799999999999999999999999999998642210 0000000100000  000 00000011112245789999998


Q ss_pred             cCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEE
Q 017490          258 SLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGL  307 (370)
Q Consensus       258 P~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga  307 (370)
                      -.. ++...+ +.....+.+++.+|-.-.| +-.++.+.+.+-..++.++
T Consensus        79 K~~-~~~~al-~~l~~~l~~~t~vv~lQNG-v~~~e~l~~~~~~~~v~~g  125 (305)
T PRK05708         79 KAY-DAEPAV-ASLAHRLAPGAELLLLQNG-LGSQDAVAARVPHARCIFA  125 (305)
T ss_pred             CHH-hHHHHH-HHHHhhCCCCCEEEEEeCC-CCCHHHHHHhCCCCcEEEE
Confidence            743 333333 3445557788887777555 3456667777766666544

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.14  E-value=0.031  Score=45.64  Aligned_cols=88  Identities=22%  Similarity=0.282  Sum_probs=52.2

Q ss_pred             EEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCCCCHHH----HHhcCCEEE
Q 017490          180 VFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFE----FASKADVVV  254 (370)
Q Consensus       180 vGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~e----ll~~aDiV~  254 (370)
                      |-|+|+|.+|+.+++.|+..+.+|+++|+++........             .... -.+...+.+.    -++++|.|+
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~-------------~~~~~i~gd~~~~~~l~~a~i~~a~~vv   67 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE-------------EGVEVIYGDATDPEVLERAGIEKADAVV   67 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH-------------TTSEEEES-TTSHHHHHHTTGGCESEEE
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh-------------cccccccccchhhhHHhhcCccccCEEE
Confidence            569999999999999999977799999987644211110             0111 1122333332    257899999


Q ss_pred             EeccCChhhhcccCHHHHhcCCCCcEEE
Q 017490          255 CCLSLNKQTAGIVNKSFLSSMKKGSLLV  282 (370)
Q Consensus       255 l~lP~t~~t~~li~~~~l~~mk~gailI  282 (370)
                      ++.+....+.  .-...++.+-+...+|
T Consensus        68 ~~~~~d~~n~--~~~~~~r~~~~~~~ii   93 (116)
T PF02254_consen   68 ILTDDDEENL--LIALLARELNPDIRII   93 (116)
T ss_dssp             EESSSHHHHH--HHHHHHHHHTTTSEEE
T ss_pred             EccCCHHHHH--HHHHHHHHHCCCCeEE
Confidence            9988554332  2233445445554554

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein

Probab=95.12  E-value=0.031  Score=55.17  Aligned_cols=34  Identities=41%  Similarity=0.497  Sum_probs=31.1

Q ss_pred             eEEEEecCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      ||||||-|..|+.+++.++.+|++|+++|.++..
T Consensus         1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~   34 (352)
T TIGR01161         1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANS   34 (352)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCC
Confidence            5999999999999999999999999999987543

Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=95.06  E-value=0.035  Score=62.09  Aligned_cols=73  Identities=19%  Similarity=0.289  Sum_probs=45.3

Q ss_pred             cCceEEEEecCchhHHHHHHhccC-CCE-------------EEEEcCCCccccccccccchhhhccccccccccccC-CC
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPF-GVK-------------IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CH  240 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~-G~~-------------V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  240 (370)
                      ..|+|+|||.|.||+..|+.|... +.+             |.+.|++.........   .+  +      .+.... ..
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~---~~--~------~~~~v~lDv  636 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVE---GI--E------NAEAVQLDV  636 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHH---hc--C------CCceEEeec
Confidence            477999999999999999999653 333             8888887644211000   00  0      000000 12


Q ss_pred             CC---HHHHHhcCCEEEEeccC
Q 017490          241 ED---IFEFASKADVVVCCLSL  259 (370)
Q Consensus       241 ~~---l~ell~~aDiV~l~lP~  259 (370)
                      .+   +.++++++|+|++++|.
T Consensus       637 ~D~e~L~~~v~~~DaVIsalP~  658 (1042)
T PLN02819        637 SDSESLLKYVSQVDVVISLLPA  658 (1042)
T ss_pred             CCHHHHHHhhcCCCEEEECCCc
Confidence            34   44444689999999995

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=95.03  E-value=0.018  Score=57.50  Aligned_cols=76  Identities=20%  Similarity=0.343  Sum_probs=44.4

Q ss_pred             EEEEecCchhHHHHHHhccCC-C-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEec
Q 017490          180 VFILGFGNIGVELAKRLRPFG-V-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  257 (370)
Q Consensus       180 vGIiGlG~IG~~vA~~l~~~G-~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  257 (370)
                      |+|+|.|.+|+.+++.|...+ + +|++.||+..+.......   +  ....+....-......+++++++++|+|+.|+
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~---~--~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~   75 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEK---L--LGDRVEAVQVDVNDPESLAELLRGCDVVINCA   75 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT-------TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-S
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhh---c--cccceeEEEEecCCHHHHHHHHhcCCEEEECC
Confidence            689999999999999998765 5 899999987652111000   0  00000000000012234778999999999999


Q ss_pred             cCC
Q 017490          258 SLN  260 (370)
Q Consensus       258 P~t  260 (370)
                      |..
T Consensus        76 gp~   78 (386)
T PF03435_consen   76 GPF   78 (386)
T ss_dssp             SGG
T ss_pred             ccc
Confidence            854

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK07411 hypothetical protein; Validated

Probab=95.02  E-value=0.031  Score=56.32  Aligned_cols=110  Identities=24%  Similarity=0.247  Sum_probs=62.3

Q ss_pred             cCCCCcccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccc----cchh------------hhcccc
Q 017490          167 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQ----SSAL------------AVKNGI  229 (370)
Q Consensus       167 ~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~----~~~~------------~~~~~~  229 (370)
                      |+......|+.++|+|||+|.+|..+|+.|...|. ++..+|...-...-..++    ..+.            ...+..
T Consensus        28 ~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~  107 (390)
T PRK07411         28 VGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPY  107 (390)
T ss_pred             cCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCC
Confidence            44333457899999999999999999999998888 688888653221000000    0000            000000


Q ss_pred             cc-ccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCC
Q 017490          230 ID-DLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKK  277 (370)
Q Consensus       230 ~~-~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~  277 (370)
                      +. +.........+..+++.++|+|+.|+- +.+++.+++....+.-+|
T Consensus       108 v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d-~~~~r~~ln~~~~~~~~p  155 (390)
T PRK07411        108 CQVDLYETRLSSENALDILAPYDVVVDGTD-NFPTRYLVNDACVLLNKP  155 (390)
T ss_pred             CeEEEEecccCHHhHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCCC
Confidence            00 000000011244567889998877754 567788887665544343

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=95.00  E-value=0.055  Score=52.87  Aligned_cols=125  Identities=14%  Similarity=0.175  Sum_probs=67.6

Q ss_pred             ceEEEEecCchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  255 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  255 (370)
                      .+|+|||.|.||..+|..+...|.  ++..+|.+.+.... ..  .++....... .. .......+.++ +++||+|++
T Consensus         4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g-~a--~Dl~~~~~~~-~~-~~v~~~~dy~~-~~~adivvi   77 (312)
T cd05293           4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKG-EA--MDLQHGSAFL-KN-PKIEADKDYSV-TANSKVVIV   77 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHH-HH--HHHHHhhccC-CC-CEEEECCCHHH-hCCCCEEEE
Confidence            589999999999999998865554  79999987543111 00  0110000000 00 00001134554 899999999


Q ss_pred             eccC--Ch-hhh-ccc--CH-------HHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHhCCceEEE
Q 017490          256 CLSL--NK-QTA-GIV--NK-------SFLSSMKKGSLLVNIARGGLLDYEAIAHY--LECGHLGGLG  308 (370)
Q Consensus       256 ~lP~--t~-~t~-~li--~~-------~~l~~mk~gailIN~sRg~~vd~~aL~~a--L~~g~i~ga~  308 (370)
                      +.-.  .+ ++| .++  |.       +.+....|.+++|+++...=+-...+.+.  +...++.|.+
T Consensus        78 taG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~k~sg~p~~~viG~g  145 (312)
T cd05293          78 TAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVAWKLSGLPKHRVIGSG  145 (312)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHHHHHhCCCHHHEEecC
Confidence            6442  21 233 122  11       23445578999999984332223333333  4445666553

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=94.99  E-value=0.029  Score=54.61  Aligned_cols=100  Identities=22%  Similarity=0.163  Sum_probs=57.3

Q ss_pred             eEEEEecCchhHHHHHHhccCC--CEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEe
Q 017490          179 TVFILGFGNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  256 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G--~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  256 (370)
                      +|+|||.|.+|..+|..+...|  .+|..+|++........   .++.....  . .........+. +.++.||+|+++
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a---~dl~~~~~--~-~~~~~i~~~d~-~~l~~aDiViit   74 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEA---MDLAHGTP--F-VKPVRIYAGDY-ADCKGADVVVIT   74 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHH---HHHHcccc--c-cCCeEEeeCCH-HHhCCCCEEEEc
Confidence            6999999999999999998888  58999998764321000   00000000  0 00000011234 558999999999


Q ss_pred             ccCChh---hhc-cc--CH-------HHHhcCCCCcEEEEcC
Q 017490          257 LSLNKQ---TAG-IV--NK-------SFLSSMKKGSLLVNIA  285 (370)
Q Consensus       257 lP~t~~---t~~-li--~~-------~~l~~mk~gailIN~s  285 (370)
                      .+....   ++- ++  |.       +.+....+.+++++.+
T Consensus        75 a~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t  116 (308)
T cd05292          75 AGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT  116 (308)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            885321   111 11  11       1234455778888885

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=94.93  E-value=0.14  Score=52.38  Aligned_cols=130  Identities=20%  Similarity=0.267  Sum_probs=77.6

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccc-cccCCCCCHHHHHhcCCEE
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV-DEKGCHEDIFEFASKADVV  253 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~~aDiV  253 (370)
                      ..+++|.|+|+|.-|.++|+.|...|++|+++|.++.+.......   ..      .+.. ...+.  ...+.+.++|+|
T Consensus         5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~---~~------~~~i~~~~g~--~~~~~~~~~d~v   73 (448)
T COG0771           5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQP---LL------LEGIEVELGS--HDDEDLAEFDLV   73 (448)
T ss_pred             ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhh---hh------ccCceeecCc--cchhccccCCEE
Confidence            449999999999999999999999999999999765541110000   00      0000 01111  122667889999


Q ss_pred             EEe--ccCChh------hh--cccC-HHHHhcC--CCCcEEEEcCCCcccCHHHHHHHHHhC--------CceEEEEecC
Q 017490          254 VCC--LSLNKQ------TA--GIVN-KSFLSSM--KKGSLLVNIARGGLLDYEAIAHYLECG--------HLGGLGIDVA  312 (370)
Q Consensus       254 ~l~--lP~t~~------t~--~li~-~~~l~~m--k~gailIN~sRg~~vd~~aL~~aL~~g--------~i~ga~lDV~  312 (370)
                      +..  +|.+..      ..  .+++ -+.+-+.  +.-.+-|--+.|..-.+.-+.+.|++.        .|...++|+.
T Consensus        74 V~SPGi~~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~  153 (448)
T COG0771          74 VKSPGIPPTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELL  153 (448)
T ss_pred             EECCCCCCCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhh
Confidence            886  333221      11  1222 1223332  222555555568887777777777754        4566778888


Q ss_pred             CCC
Q 017490          313 WTE  315 (370)
Q Consensus       313 ~~E  315 (370)
                      .++
T Consensus       154 ~~~  156 (448)
T COG0771         154 EQA  156 (448)
T ss_pred             ccc
Confidence            764

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=94.90  E-value=0.032  Score=56.25  Aligned_cols=44  Identities=23%  Similarity=0.310  Sum_probs=35.9

Q ss_pred             cCCCCcccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCC
Q 017490          167 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  210 (370)
Q Consensus       167 ~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~  210 (370)
                      |+......|..++|.|||+|.+|..+|+.|...|. ++..+|...
T Consensus        32 ~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~   76 (392)
T PRK07878         32 VGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDV   76 (392)
T ss_pred             cCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence            44333456899999999999999999999988887 688888643

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=94.90  E-value=0.15  Score=51.96  Aligned_cols=96  Identities=20%  Similarity=0.237  Sum_probs=62.0

Q ss_pred             cccccCceEEEEec----------CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCC
Q 017490          172 GETLLGKTVFILGF----------GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHE  241 (370)
Q Consensus       172 ~~~l~g~tvGIiGl----------G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (370)
                      +..+.|++|+|+|+          ..-+..+++.|...|.+|.+||+......                  .....+ ..
T Consensus       309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~------------------~~~~~~-~~  369 (425)
T PRK15182        309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEE------------------VRREYG-II  369 (425)
T ss_pred             CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhH------------------HHHhcC-cc
Confidence            45689999999999          45678999999999999999998743210                  000011 11


Q ss_pred             CHHH-HHhcCCEEEEeccCChhhhcccCHHHHh-cCCCCcEEEEcCCCcc
Q 017490          242 DIFE-FASKADVVVCCLSLNKQTAGIVNKSFLS-SMKKGSLLVNIARGGL  289 (370)
Q Consensus       242 ~l~e-ll~~aDiV~l~lP~t~~t~~li~~~~l~-~mk~gailIN~sRg~~  289 (370)
                      .+++ .+..||+|+++.... +.+. ++.+.+. .||...++|++ |+-+
T Consensus       370 ~~~~~~~~~ad~vvi~t~h~-~f~~-~~~~~~~~~~~~~~~iiD~-r~~~  416 (425)
T PRK15182        370 PVSEVKSSHYDAIIVAVGHQ-QFKQ-MGSEDIRGFGKDKHVLYDL-KYVL  416 (425)
T ss_pred             cchhhhhcCCCEEEEccCCH-Hhhc-CCHHHHHHhcCCCCEEEEC-CCCC
Confidence            1222 367899999997743 3333 4544443 45645688884 5544

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=94.85  E-value=0.02  Score=58.23  Aligned_cols=73  Identities=18%  Similarity=0.254  Sum_probs=48.1

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC---CCCCHHHH-HhcCCEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEF-ASKADVV  253 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~el-l~~aDiV  253 (370)
                      +++.|+|+|.+|+.+|+.|...|++|+++|+++......... ..+        ...  .+   ....++++ +.++|.|
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~-~~~--------~~~--~gd~~~~~~l~~~~~~~a~~v   69 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR-LDV--------RTV--VGNGSSPDVLREAGAEDADLL   69 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh-cCE--------EEE--EeCCCCHHHHHHcCCCcCCEE
Confidence            368999999999999999999999999999875532110000 000        000  11   12234555 6789999


Q ss_pred             EEeccCCh
Q 017490          254 VCCLSLNK  261 (370)
Q Consensus       254 ~l~lP~t~  261 (370)
                      +++++...
T Consensus        70 i~~~~~~~   77 (453)
T PRK09496         70 IAVTDSDE   77 (453)
T ss_pred             EEecCChH
Confidence            99988543

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=94.85  E-value=0.057  Score=53.38  Aligned_cols=97  Identities=26%  Similarity=0.229  Sum_probs=54.2

Q ss_pred             ceEEEEec-CchhHHHHHHhccC-CCEEEE-EcCCCccccccccccchhhhccccccccccc-cCCCCCHHH-HHhcCCE
Q 017490          178 KTVFILGF-GNIGVELAKRLRPF-GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDE-KGCHEDIFE-FASKADV  252 (370)
Q Consensus       178 ~tvGIiGl-G~IG~~vA~~l~~~-G~~V~~-~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~e-ll~~aDi  252 (370)
                      ++|+|+|. |.+|+.+++.+... ++++.+ .++.... .....   .+.       ..... ...+.++++ ...++|+
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g-~~l~~---~~~-------~~~~~~~~~~~~~~~~~~~~vD~   71 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAG-KPLSD---VHP-------HLRGLVDLVLEPLDPEILAGADV   71 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccC-cchHH---hCc-------ccccccCceeecCCHHHhcCCCE
Confidence            58999996 99999999999876 677655 4432211 00000   000       00000 001222322 4568999


Q ss_pred             EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCccc
Q 017490          253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLL  290 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~v  290 (370)
                      |++|+|.. ....+.    ....+.|..+||.|-.--.
T Consensus        72 Vf~alP~~-~~~~~v----~~a~~aG~~VID~S~~fR~  104 (343)
T PRK00436         72 VFLALPHG-VSMDLA----PQLLEAGVKVIDLSADFRL  104 (343)
T ss_pred             EEECCCcH-HHHHHH----HHHHhCCCEEEECCcccCC
Confidence            99999964 222221    1123578999999844433

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=94.83  E-value=0.09  Score=52.05  Aligned_cols=110  Identities=11%  Similarity=0.067  Sum_probs=68.9

Q ss_pred             ceEEEEecCchhHHHHHHhccC--CCEEEE-EcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCCE
Q 017490          178 KTVFILGFGNIGVELAKRLRPF--GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADV  252 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~--G~~V~~-~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDi  252 (370)
                      .+|||||. .+|+..++.++..  ++++.+ +|++.++.                 .+..++++  .+.++++++.+.|+
T Consensus         4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA-----------------~~~A~~~gi~~y~~~eell~d~Di   65 (343)
T TIGR01761         4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERS-----------------RALAHRLGVPLYCEVEELPDDIDI   65 (343)
T ss_pred             cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHH-----------------HHHHHHhCCCccCCHHHHhcCCCE
Confidence            58999999 6899999888764  477654 67664432                 12233333  46899999999999


Q ss_pred             EEEeccCC-hhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEE
Q 017490          253 VVCCLSLN-KQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGL  307 (370)
Q Consensus       253 V~l~lP~t-~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga  307 (370)
                      +++++|.+ +...|.  .-..+.|+.|.-++.--=-..-+.++|+++.++..+...
T Consensus        66 ~~V~ipt~~P~~~H~--e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~  119 (343)
T TIGR01761        66 ACVVVRSAIVGGQGS--ALARALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL  119 (343)
T ss_pred             EEEEeCCCCCCccHH--HHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence            99999853 221211  122334555544444322224566778888888777633

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=94.83  E-value=0.039  Score=53.93  Aligned_cols=104  Identities=15%  Similarity=0.180  Sum_probs=60.0

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCC
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKAD  251 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aD  251 (370)
                      -.+++|+|||.|.+|..+|..+...|.  ++..+|++...... ...  ++....    ....... ...+ .+.+++||
T Consensus         4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g-~~~--Dl~~~~----~~~~~~~i~~~~-~~~~~~ad   75 (315)
T PRK00066          4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEG-DAM--DLSHAV----PFTSPTKIYAGD-YSDCKDAD   75 (315)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHH-HHH--HHHhhc----cccCCeEEEeCC-HHHhCCCC
Confidence            357899999999999999999987787  79999986543111 000  010000    0000000 1123 35589999


Q ss_pred             EEEEeccC--Ch-hhh-ccc--CH-------HHHhcCCCCcEEEEcCC
Q 017490          252 VVVCCLSL--NK-QTA-GIV--NK-------SFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       252 iV~l~lP~--t~-~t~-~li--~~-------~~l~~mk~gailIN~sR  286 (370)
                      +|+++.-.  .+ ++| .++  |.       +.+..-.|.+++|+++.
T Consensus        76 ivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsN  123 (315)
T PRK00066         76 LVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASN  123 (315)
T ss_pred             EEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence            99997542  22 122 111  11       12333347889999974

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.80  E-value=0.037  Score=57.07  Aligned_cols=118  Identities=14%  Similarity=0.130  Sum_probs=68.3

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCE
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  252 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  252 (370)
                      .++.+++|.|+|+|..|+++|+.|...|++|.++|+....... ...           ...+. ........+.+.++|+
T Consensus        11 ~~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~-~l~-----------~~gi~-~~~~~~~~~~~~~~d~   77 (473)
T PRK00141         11 PQELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHK-LIE-----------VTGVA-DISTAEASDQLDSFSL   77 (473)
T ss_pred             ccccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHH-HHH-----------hcCcE-EEeCCCchhHhcCCCE
Confidence            3578899999999999999999999999999999975432100 000           00000 0001112234567898


Q ss_pred             EEEe--ccC-Chhhh-------cccCHHHHhc-------C-CC-CcEEEEcCCCcccCHHHHHHHHHhCC
Q 017490          253 VVCC--LSL-NKQTA-------GIVNKSFLSS-------M-KK-GSLLVNIARGGLLDYEAIAHYLECGH  303 (370)
Q Consensus       253 V~l~--lP~-t~~t~-------~li~~~~l~~-------m-k~-gailIN~sRg~~vd~~aL~~aL~~g~  303 (370)
                      |+..  +|. +|...       .++..-.+..       + ++ ..+-|--+-|..-...-|.+.|+...
T Consensus        78 vV~Spgi~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g  147 (473)
T PRK00141         78 VVTSPGWRPDSPLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGG  147 (473)
T ss_pred             EEeCCCCCCCCHHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcC
Confidence            8765  332 22211       1233222321       1 12 24555556788888888888887643

>PLN02527 aspartate carbamoyltransferase

Probab=94.79  E-value=0.16  Score=49.54  Aligned_cols=98  Identities=24%  Similarity=0.232  Sum_probs=60.6

Q ss_pred             cccCceEEEEecC---chhHHHHHHhccC-CCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHH
Q 017490          174 TLLGKTVFILGFG---NIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFE  245 (370)
Q Consensus       174 ~l~g~tvGIiGlG---~IG~~vA~~l~~~-G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~e  245 (370)
                      .+.|++|+++|-+   ++.++++..+..+ |++|...-+..-..  +..    +       .+.+.+.+    ...++++
T Consensus       148 ~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~--~~~----~-------~~~~~~~g~~~~~~~d~~~  214 (306)
T PLN02527        148 RLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKM--KDD----I-------KDYLTSKGVEWEESSDLME  214 (306)
T ss_pred             CcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCC--CHH----H-------HHHHHHcCCEEEEEcCHHH
Confidence            3789999999975   5789999988877 99998877643110  000    0       01111111    2468999


Q ss_pred             HHhcCCEEEEeccCCh------h------hhcccCHHHHhcCCCCcEEEEc
Q 017490          246 FASKADVVVCCLSLNK------Q------TAGIVNKSFLSSMKKGSLLVNI  284 (370)
Q Consensus       246 ll~~aDiV~l~lP~t~------~------t~~li~~~~l~~mk~gailIN~  284 (370)
                      .++.||+|....-..+      +      ....++++.++..|+++++.-+
T Consensus       215 a~~~aDvvyt~~~q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHc  265 (306)
T PLN02527        215 VASKCDVLYQTRIQRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHP  265 (306)
T ss_pred             HhCCCCEEEECCcchhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECC
Confidence            9999999988431100      0      1234566666666676666644

>PRK05086 malate dehydrogenase; Provisional

Probab=94.79  E-value=0.081  Score=51.64  Aligned_cols=103  Identities=23%  Similarity=0.220  Sum_probs=58.9

Q ss_pred             ceEEEEec-CchhHHHHHHhc---cCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCE
Q 017490          178 KTVFILGF-GNIGVELAKRLR---PFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADV  252 (370)
Q Consensus       178 ~tvGIiGl-G~IG~~vA~~l~---~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDi  252 (370)
                      ++++|||. |.||+.+|..+.   ..+..+..+|+.........    ++.  +.  .....-.+ ..+++.+.++.+|+
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~al----Dl~--~~--~~~~~i~~~~~~d~~~~l~~~Di   72 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAV----DLS--HI--PTAVKIKGFSGEDPTPALEGADV   72 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceeh----hhh--cC--CCCceEEEeCCCCHHHHcCCCCE
Confidence            47999999 999999997763   45568899998643210000    110  00  00000000 12466778899999


Q ss_pred             EEEeccCChh---hh-cccC------HH---HHhcCCCCcEEEEcCCCc
Q 017490          253 VVCCLSLNKQ---TA-GIVN------KS---FLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       253 V~l~lP~t~~---t~-~li~------~~---~l~~mk~gailIN~sRg~  288 (370)
                      |++++-....   ++ .++.      ++   .+..-.+.+++++++..-
T Consensus        73 VIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~  121 (312)
T PRK05086         73 VLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV  121 (312)
T ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence            9999764211   11 1121      12   233346788999997654

>PRK11579 putative oxidoreductase; Provisional

Probab=94.68  E-value=0.051  Score=53.51  Aligned_cols=66  Identities=12%  Similarity=0.079  Sum_probs=43.0

Q ss_pred             ceEEEEecCchhHH-HHHHhcc-CCCEEEE-EcCCCccccccccccchhhhccccccccccccCCCCCHHHHHh--cCCE
Q 017490          178 KTVFILGFGNIGVE-LAKRLRP-FGVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADV  252 (370)
Q Consensus       178 ~tvGIiGlG~IG~~-vA~~l~~-~G~~V~~-~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDi  252 (370)
                      .+|||||+|.||+. .+..++. -++++.+ +|++..+..                 +.......+.+++++++  +.|+
T Consensus         5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~-----------------~~~~~~~~~~~~~ell~~~~vD~   67 (346)
T PRK11579          5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVK-----------------ADWPTVTVVSEPQHLFNDPNIDL   67 (346)
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHH-----------------hhCCCCceeCCHHHHhcCCCCCE
Confidence            47999999999985 4565544 4788764 666533210                 00000113578999996  5799


Q ss_pred             EEEeccCC
Q 017490          253 VVCCLSLN  260 (370)
Q Consensus       253 V~l~lP~t  260 (370)
                      |++++|..
T Consensus        68 V~I~tp~~   75 (346)
T PRK11579         68 IVIPTPND   75 (346)
T ss_pred             EEEcCCcH
Confidence            99999953

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=94.67  E-value=0.036  Score=58.28  Aligned_cols=91  Identities=12%  Similarity=0.206  Sum_probs=55.6

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCH---HH-HHhcCCEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDI---FE-FASKADVV  253 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~e-ll~~aDiV  253 (370)
                      -.+-|+|+|++|+.+|+.|+..|.+|+++|.+++......+            .+...-.+...+.   ++ -++++|.+
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~------------~g~~~i~GD~~~~~~L~~a~i~~a~~v  485 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE------------RGIRAVLGNAANEEIMQLAHLDCARWL  485 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH------------CCCeEEEcCCCCHHHHHhcCccccCEE
Confidence            35669999999999999999999999999987654211100            0000011222332   22 25689999


Q ss_pred             EEeccCChhhhcccCHHHHhcCCCCcEEE
Q 017490          254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLV  282 (370)
Q Consensus       254 ~l~lP~t~~t~~li~~~~l~~mk~gailI  282 (370)
                      +++++...++..++-.  ...+.+...+|
T Consensus       486 iv~~~~~~~~~~iv~~--~~~~~~~~~ii  512 (558)
T PRK10669        486 LLTIPNGYEAGEIVAS--AREKRPDIEII  512 (558)
T ss_pred             EEEcCChHHHHHHHHH--HHHHCCCCeEE
Confidence            9999876665544432  22334555555

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=94.61  E-value=0.022  Score=51.87  Aligned_cols=44  Identities=20%  Similarity=0.403  Sum_probs=37.4

Q ss_pred             cCCCCcccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCC
Q 017490          167 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  210 (370)
Q Consensus       167 ~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~  210 (370)
                      |+....+.|..++|.|+|+|.+|.++++.|...|. ++..+|...
T Consensus        11 ~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~   55 (197)
T cd01492          11 WGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT   55 (197)
T ss_pred             hCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            55444567999999999999999999999999998 588888653

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=94.60  E-value=0.044  Score=58.28  Aligned_cols=95  Identities=20%  Similarity=0.200  Sum_probs=60.3

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHH----HhcCCEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF----ASKADVV  253 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~aDiV  253 (370)
                      ..+-|+|+|++|+.+++.|...|.++++.|.+++.......            .+...-++...+.+-+    +.+||.+
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~------------~g~~v~~GDat~~~~L~~agi~~A~~v  468 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK------------YGYKVYYGDATQLELLRAAGAEKAEAI  468 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh------------CCCeEEEeeCCCHHHHHhcCCccCCEE
Confidence            46889999999999999999999999999987654211000            0000111222333222    5689999


Q ss_pred             EEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       254 ~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                      +++++..+.+..++  ...+++.|...+|--+|
T Consensus       469 v~~~~d~~~n~~i~--~~~r~~~p~~~IiaRa~  499 (601)
T PRK03659        469 VITCNEPEDTMKIV--ELCQQHFPHLHILARAR  499 (601)
T ss_pred             EEEeCCHHHHHHHH--HHHHHHCCCCeEEEEeC
Confidence            99999766654443  23444556666654444

>PRK10637 cysG siroheme synthase; Provisional

Probab=94.59  E-value=0.045  Score=56.25  Aligned_cols=98  Identities=13%  Similarity=0.185  Sum_probs=59.9

Q ss_pred             CcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490          171 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  250 (370)
Q Consensus       171 ~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  250 (370)
                      ...+|+|++|.|||-|.++..=++.|..+|++|.++.+...+....      +.. .+.+ .+...  .+  .++.++.+
T Consensus         6 ~~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~------l~~-~~~i-~~~~~--~~--~~~dl~~~   73 (457)
T PRK10637          6 IFCQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTA------WAD-AGML-TLVEG--PF--DESLLDTC   73 (457)
T ss_pred             eEEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHH------HHh-CCCE-EEEeC--CC--ChHHhCCC
Confidence            3468999999999999999998899999999999998765432100      000 0000 11111  11  23456788


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcC
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~s  285 (370)
                      ++|+.++...+     +|.......+...+++|++
T Consensus        74 ~lv~~at~d~~-----~n~~i~~~a~~~~~lvN~~  103 (457)
T PRK10637         74 WLAIAATDDDA-----VNQRVSEAAEARRIFCNVV  103 (457)
T ss_pred             EEEEECCCCHH-----HhHHHHHHHHHcCcEEEEC
Confidence            98888865432     3444444444445555553

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=94.58  E-value=0.071  Score=47.52  Aligned_cols=32  Identities=28%  Similarity=0.295  Sum_probs=28.6

Q ss_pred             eEEEEecCchhHHHHHHhccCCC-EEEEEcCCC
Q 017490          179 TVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  210 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~  210 (370)
                      +|+|+|+|.+|..+|+.|...|. ++..+|...
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            58999999999999999998898 599998764

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function

Probab=94.55  E-value=0.081  Score=45.94  Aligned_cols=85  Identities=21%  Similarity=0.211  Sum_probs=52.4

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEE
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  254 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  254 (370)
                      ..|++|++||+=   ++++++++..+.+|.++|+++.......             ...     .....++++++||+|+
T Consensus         9 ~~~~~V~~VG~f---~P~~~~l~~~~~~v~v~d~~~~~~~~~~-------------~~~-----~~~~~~~~l~~aD~vi   67 (147)
T PF04016_consen    9 GPGDKVGMVGYF---QPLVEKLKERGAEVRVFDLNPDNIGEEP-------------GDV-----PDEDAEEILPWADVVI   67 (147)
T ss_dssp             TTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SSC-------------T-E-----EGGGHHHHGGG-SEEE
T ss_pred             cCCCEEEEEcCc---HHHHHHHhcCCCCEEEEECCCCCCCCCC-------------CcC-----CHHHHHHHHccCCEEE
Confidence            578999999961   2477888888999999999864310000             000     2245678899999998


Q ss_pred             EeccCChhhhcccC---HHHHhcCCCCcEEEEcCC
Q 017490          255 CCLSLNKQTAGIVN---KSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       255 l~lP~t~~t~~li~---~~~l~~mk~gailIN~sR  286 (370)
                      +.=-      -++|   .+.|+..+++..++=.+-
T Consensus        68 iTGs------TlvN~Ti~~iL~~~~~~~~vil~Gp   96 (147)
T PF04016_consen   68 ITGS------TLVNGTIDDILELARNAREVILYGP   96 (147)
T ss_dssp             EECH------HCCTTTHHHHHHHTTTSSEEEEESC
T ss_pred             EEee------eeecCCHHHHHHhCccCCeEEEEec
Confidence            7621      1343   246666676666665553

; PDB: 3L5O_B 3NPG_A.

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=94.53  E-value=0.13  Score=52.20  Aligned_cols=72  Identities=13%  Similarity=0.113  Sum_probs=52.6

Q ss_pred             cccccCceEEEEec----------CchhHHHHHHhccCC-CEEEEEcCCCccccccccccchhhhccccccccccccCCC
Q 017490          172 GETLLGKTVFILGF----------GNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCH  240 (370)
Q Consensus       172 ~~~l~g~tvGIiGl----------G~IG~~vA~~l~~~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (370)
                      +..+.|++|+|+|+          ..-...+++.|+..| .+|.+||+......                 .........
T Consensus       315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~-----------------~~~~~~~~~  377 (415)
T PRK11064        315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLP-----------------KKLDGLVTL  377 (415)
T ss_pred             ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchh-----------------hhccCceee
Confidence            46689999999998          446779999999996 99999998743210                 000000123


Q ss_pred             CCHHHHHhcCCEEEEeccCC
Q 017490          241 EDIFEFASKADVVVCCLSLN  260 (370)
Q Consensus       241 ~~l~ell~~aDiV~l~lP~t  260 (370)
                      .++++.++.||+|+++.+..
T Consensus       378 ~~~~~~~~~ad~vvi~t~~~  397 (415)
T PRK11064        378 VSLDEALATADVLVMLVDHS  397 (415)
T ss_pred             CCHHHHHhCCCEEEECCCCH
Confidence            67889999999999998743

>PRK08223 hypothetical protein; Validated

Probab=94.49  E-value=0.08  Score=51.01  Aligned_cols=38  Identities=24%  Similarity=0.315  Sum_probs=33.3

Q ss_pred             cccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCC
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  209 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~  209 (370)
                      ...|+.++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus        22 Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D   60 (287)
T PRK08223         22 QQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD   60 (287)
T ss_pred             HHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            456899999999999999999999998888 67777754

>PRK01713 ornithine carbamoyltransferase; Provisional

Probab=94.46  E-value=0.57  Score=46.26  Aligned_cols=103  Identities=13%  Similarity=0.098  Sum_probs=64.0

Q ss_pred             cccCceEEEEecC--chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHH
Q 017490          174 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFA  247 (370)
Q Consensus       174 ~l~g~tvGIiGlG--~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell  247 (370)
                      .+.|++|++||=+  ++.++++..+..+|++|.+..|..-..  +.+. .+.      +.+.....+    ...++++.+
T Consensus       153 ~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p--~~~~-~~~------~~~~~~~~g~~~~~~~d~~~a~  223 (334)
T PRK01713        153 PLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLP--EASL-VEM------CEKFAKESGARITVTDDIDKAV  223 (334)
T ss_pred             CcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcC--CHHH-HHH------HHHHHHHcCCeEEEEcCHHHHh
Confidence            4789999999986  678888899999999999887642210  0000 000      000111111    247899999


Q ss_pred             hcCCEEEEec----cCC----hh-----hhcccCHHHHhcC-CCCcEEEEcC
Q 017490          248 SKADVVVCCL----SLN----KQ-----TAGIVNKSFLSSM-KKGSLLVNIA  285 (370)
Q Consensus       248 ~~aDiV~l~l----P~t----~~-----t~~li~~~~l~~m-k~gailIN~s  285 (370)
                      ++||+|..-.    ...    ++     ....++.+.++.. |++++|.-+.
T Consensus       224 ~~aDvVyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~l  275 (334)
T PRK01713        224 KGVDFVHTDVWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCL  275 (334)
T ss_pred             CCCCEEEEcceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCC
Confidence            9999998732    110    01     1234677778875 7888887663

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=94.42  E-value=0.075  Score=51.28  Aligned_cols=88  Identities=11%  Similarity=0.030  Sum_probs=53.5

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCE-EEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEE
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  254 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~-V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  254 (370)
                      .|+++.|+|.|.||...++.++.+|++ |.+.|+...+..                  ..........-++.-...|+|+
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~------------------~a~~~~~i~~~~~~~~g~Dvvi  205 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRD------------------GATGYEVLDPEKDPRRDYRAIY  205 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHH------------------hhhhccccChhhccCCCCCEEE
Confidence            477899999999999999999999997 556665432210                  0000000000001112468888


Q ss_pred             EeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          255 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       255 l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                      -++.....    + ...++.++++..++.++-
T Consensus       206 d~~G~~~~----~-~~~~~~l~~~G~iv~~G~  232 (308)
T TIGR01202       206 DASGDPSL----I-DTLVRRLAKGGEIVLAGF  232 (308)
T ss_pred             ECCCCHHH----H-HHHHHhhhcCcEEEEEee
Confidence            77653211    1 345677888888887763

>PRK02255 putrescine carbamoyltransferase; Provisional

Probab=94.35  E-value=0.23  Score=49.03  Aligned_cols=103  Identities=14%  Similarity=0.121  Sum_probs=65.0

Q ss_pred             cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHHh
Q 017490          174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFAS  248 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~  248 (370)
                      .+.|++|+++|= .++.++++..+..+|++|..+.|..-..  +... .++      +.+.....+    ...++++.++
T Consensus       151 ~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~--~~~~-~~~------~~~~~~~~g~~~~~~~d~~eav~  221 (338)
T PRK02255        151 KLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQL--PEEH-LAI------AEENCEVSGGSVLVTDDVDEAVK  221 (338)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCcccc--CHHH-HHH------HHHHHHhcCCeEEEEcCHHHHhC
Confidence            588999999996 6888888999999999999987642111  0000 000      000000111    2468999999


Q ss_pred             cCCEEEEec-----cCC---hh------hhcccCHHHHhcCCCCcEEEEcC
Q 017490          249 KADVVVCCL-----SLN---KQ------TAGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       249 ~aDiV~l~l-----P~t---~~------t~~li~~~~l~~mk~gailIN~s  285 (370)
                      .+|+|..-.     ...   ++      -..-++++.++.+|++++|.-+.
T Consensus       222 ~aDvvy~~~w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHpL  272 (338)
T PRK02255        222 DADFVYTDVWYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHCL  272 (338)
T ss_pred             CCCEEEEcccHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCCC
Confidence            999998832     110   00      02456778888888888777663

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=94.35  E-value=0.073  Score=52.62  Aligned_cols=82  Identities=17%  Similarity=0.217  Sum_probs=44.3

Q ss_pred             ceEEEEecCchhHHHHHHhcc-CCCEEEEEcCCCccccccccccchhhhcccccccc---ccccC--CCCCHHHHHhcCC
Q 017490          178 KTVFILGFGNIGVELAKRLRP-FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDL---VDEKG--CHEDIFEFASKAD  251 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~-~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~l~ell~~aD  251 (370)
                      .+|||+|+|.||+.+++.+.. -++++.+.................|...... .+.   ....+  ...++++++..+|
T Consensus         2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~-~~~~~~~~~~~i~V~~~~~el~~~vD   80 (341)
T PRK04207          2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVAD-PEREKAFEEAGIPVAGTIEDLLEKAD   80 (341)
T ss_pred             eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccC-ccccccccCCceEEcCChhHhhccCC
Confidence            379999999999999998764 5788776543211100000000000000000 000   00011  1246778888999


Q ss_pred             EEEEeccCC
Q 017490          252 VVVCCLSLN  260 (370)
Q Consensus       252 iV~l~lP~t  260 (370)
                      +|+.|.|..
T Consensus        81 VVIdaT~~~   89 (341)
T PRK04207         81 IVVDATPGG   89 (341)
T ss_pred             EEEECCCch
Confidence            999998754

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=94.34  E-value=0.1  Score=49.96  Aligned_cols=36  Identities=22%  Similarity=0.224  Sum_probs=32.2

Q ss_pred             CceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCcc
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  212 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~  212 (370)
                      ++++.|+|.|..+++++..|+..|+ +|.+++|+.++
T Consensus       122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~  158 (272)
T PRK12550        122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKT  158 (272)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHH
Confidence            4689999999999999999999998 59999998654

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=94.34  E-value=0.05  Score=52.93  Aligned_cols=66  Identities=21%  Similarity=0.250  Sum_probs=45.6

Q ss_pred             ceEEEEecCchhH-HHHHHhccCC--CE-EEEEcCCCccccccccccchhhhccccccccccccC---CCCCHHHHHhc-
Q 017490          178 KTVFILGFGNIGV-ELAKRLRPFG--VK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFASK-  249 (370)
Q Consensus       178 ~tvGIiGlG~IG~-~vA~~l~~~G--~~-V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~~-  249 (370)
                      .++||||+|.+++ ..+..++..+  +. |.++|++..+..                 ....+++   .+.+++++++. 
T Consensus         4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~-----------------~~a~~~~~~~~~~~~~~ll~~~   66 (342)
T COG0673           4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAE-----------------AFAEEFGIAKAYTDLEELLADP   66 (342)
T ss_pred             eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHH-----------------HHHHHcCCCcccCCHHHHhcCC
Confidence            5899999997775 5777777765  34 556688765421                 1222222   46789999985 


Q ss_pred             -CCEEEEeccCC
Q 017490          250 -ADVVVCCLSLN  260 (370)
Q Consensus       250 -aDiV~l~lP~t  260 (370)
                       .|+|++++|..
T Consensus        67 ~iD~V~Iatp~~   78 (342)
T COG0673          67 DIDAVYIATPNA   78 (342)
T ss_pred             CCCEEEEcCCCh
Confidence             59999999954

>PRK04148 hypothetical protein; Provisional

Probab=94.32  E-value=0.059  Score=46.10  Aligned_cols=36  Identities=25%  Similarity=0.384  Sum_probs=32.4

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      +++++.+||+| -|..+|..|+..|++|+++|.++..
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~a   51 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKA   51 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHH
Confidence            46789999999 9999999999999999999988653

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=94.31  E-value=0.067  Score=54.86  Aligned_cols=116  Identities=24%  Similarity=0.217  Sum_probs=69.9

Q ss_pred             cccCceEEEEecCchhHH-HHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCE
Q 017490          174 TLLGKTVFILGFGNIGVE-LAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  252 (370)
Q Consensus       174 ~l~g~tvGIiGlG~IG~~-vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  252 (370)
                      ..+++++.|+|+|..|.+ +|+.|+..|++|.++|....+....      +.      ...+.-. . ..-.+.+..+|+
T Consensus         4 ~~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~------l~------~~gi~~~-~-~~~~~~~~~~d~   69 (461)
T PRK00421          4 LRRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQR------LL------ELGAIIF-I-GHDAENIKDADV   69 (461)
T ss_pred             cCCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHH------HH------HCCCEEe-C-CCCHHHCCCCCE
Confidence            356789999999999999 7999999999999999764321000      00      0000000 0 112344567898


Q ss_pred             EEEe--ccC-Chhhh-------cccCHH-HHhc-CCC-CcEEEEcCCCcccCHHHHHHHHHhCC
Q 017490          253 VVCC--LSL-NKQTA-------GIVNKS-FLSS-MKK-GSLLVNIARGGLLDYEAIAHYLECGH  303 (370)
Q Consensus       253 V~l~--lP~-t~~t~-------~li~~~-~l~~-mk~-gailIN~sRg~~vd~~aL~~aL~~g~  303 (370)
                      |+..  +|. +|...       .+++.- .+.. +++ ..+-|--+.|..-...-+.+.|+...
T Consensus        70 vv~spgi~~~~~~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g  133 (461)
T PRK00421         70 VVYSSAIPDDNPELVAARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG  133 (461)
T ss_pred             EEECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence            8775  332 22221       234433 3333 332 35566666799888888888887654

>PRK06270 homoserine dehydrogenase; Provisional

Probab=94.29  E-value=0.093  Score=51.86  Aligned_cols=127  Identities=21%  Similarity=0.274  Sum_probs=65.3

Q ss_pred             ceEEEEecCchhHHHHHHhccC----------CCEEEE-EcCCCcccc---ccccccchhhhccccccccccccCCCCCH
Q 017490          178 KTVFILGFGNIGVELAKRLRPF----------GVKIIA-TKRSWASHS---QVSCQSSALAVKNGIIDDLVDEKGCHEDI  243 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~----------G~~V~~-~dr~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  243 (370)
                      .+|||+|+|.||+.+++.+...          +++|.+ .|++..-..   .....+..+....+.... ........++
T Consensus         3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~-~~~~~~~~d~   81 (341)
T PRK06270          3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLAD-YPEGGGEISG   81 (341)
T ss_pred             EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCccc-CccccccCCH
Confidence            3799999999999999988644          567654 454321000   000000000000000000 0000012378


Q ss_pred             HHHHh--cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHhCCce
Q 017490          244 FEFAS--KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL-LDYEAIAHYLECGHLG  305 (370)
Q Consensus       244 ~ell~--~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~-vd~~aL~~aL~~g~i~  305 (370)
                      ++++.  +.|+|+.++|....+...--.-....++.|.-+|-..-+.+ ...++|.++.++....
T Consensus        82 ~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~  146 (341)
T PRK06270         82 LEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVR  146 (341)
T ss_pred             HHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCE
Confidence            88884  68999999986543211111112444666766665443333 2456788887776654

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=94.29  E-value=0.38  Score=46.43  Aligned_cols=111  Identities=14%  Similarity=0.090  Sum_probs=72.4

Q ss_pred             CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEe
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  256 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  256 (370)
                      |++++|||-=.=-..+++.|...|++|..|.-....                   ............++.++++|+|++=
T Consensus         1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~i~p   61 (287)
T TIGR02853         1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLE-------------------DGFTGAVKCELLELDLTTLDVVILP   61 (287)
T ss_pred             CcEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccc-------------------cccccceeecchhhhhccCCEEEEC
Confidence            678999998887888999999999998776532111                   0011011223455568999999999


Q ss_pred             ccCChhh---------hc-ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCC
Q 017490          257 LSLNKQT---------AG-IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW  313 (370)
Q Consensus       257 lP~t~~t---------~~-li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~  313 (370)
                      +|.+...         .. -++++.++.|+++++ +-++    ++..++-++.++..+.  ..|.++
T Consensus        62 ~~~~~~~~~i~~~~~~~~~~l~~~~l~~~~~~~~-~~~G----~~~~~l~~~a~~~gi~--v~~~~~  121 (287)
T TIGR02853        62 VPGTSHDGKVATVFSNEKVVLTPELLESTKGHCT-IYVG----ISNPYLEQLAADAGVK--LIELFE  121 (287)
T ss_pred             CccccCCceEecccccCCccccHHHHHhcCCCCE-EEEe----cCCHHHHHHHHHCCCe--EEEEEe
Confidence            9965432         11 246889999998665 3343    4455666677777776  454433

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=94.28  E-value=0.11  Score=49.41  Aligned_cols=36  Identities=25%  Similarity=0.422  Sum_probs=31.9

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCE-EEEEcCCCc
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWA  211 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~-V~~~dr~~~  211 (370)
                      .|.+|.|+|.|.||...++.++.+|.+ |++.+++..
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~  156 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPD  156 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence            688999999999999999999999997 888876544

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=94.27  E-value=0.18  Score=46.44  Aligned_cols=98  Identities=28%  Similarity=0.353  Sum_probs=58.4

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHH-----Hhc
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF-----ASK  249 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-----l~~  249 (370)
                      ..|.+|.|+|.|.+|+.+++.++..|.+|++.+++.........    +    + .......  ...+..+.     -..
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~----g-~~~~~~~--~~~~~~~~~~~~~~~~  201 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKE----L----G-ADHVIDY--KEEDLEEELRLTGGGG  201 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----h----C-CceeccC--CcCCHHHHHHHhcCCC
Confidence            35789999999999999999999999999999876433110000    0    0 0000000  00111111     135


Q ss_pred             CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490          250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~  288 (370)
                      .|+++.+++...     .-...++.|+++..+++.+...
T Consensus       202 ~d~vi~~~~~~~-----~~~~~~~~l~~~G~~v~~~~~~  235 (271)
T cd05188         202 ADVVIDAVGGPE-----TLAQALRLLRPGGRIVVVGGTS  235 (271)
T ss_pred             CCEEEECCCCHH-----HHHHHHHhcccCCEEEEEccCC
Confidence            788887765321     1234566778888888877654

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=94.25  E-value=0.061  Score=52.01  Aligned_cols=124  Identities=15%  Similarity=0.106  Sum_probs=64.1

Q ss_pred             EEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEecc
Q 017490          180 VFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLS  258 (370)
Q Consensus       180 vGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP  258 (370)
                      |+|||.|.||..+|..+...|. +|+.+|++..... ....  ++...... ...........+. +.++.||+|+++..
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~-g~~~--dl~~~~~~-~~~~~~I~~t~d~-~~l~dADiVIit~g   75 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQ-GKAL--DISQAAPI-LGSDTKVTGTNDY-EDIAGSDVVVITAG   75 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHH-HHHH--HHHHhhhh-cCCCeEEEEcCCH-HHhCCCCEEEEecC
Confidence            6899999999999998876554 9999998754311 0000  00000000 0000000012344 45899999999874


Q ss_pred             C--Chh---------hhcccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH--HhCCceEEE
Q 017490          259 L--NKQ---------TAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYL--ECGHLGGLG  308 (370)
Q Consensus       259 ~--t~~---------t~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL--~~g~i~ga~  308 (370)
                      .  .+.         +..++.  .+.+....|.+++|+.+...-+-...+.+..  ...++.|.+
T Consensus        76 ~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGlg  140 (300)
T cd01339          76 IPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGMA  140 (300)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEec
Confidence            2  111         111110  1123445577888888754433333444432  122466655

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK00779 ornithine carbamoyltransferase; Provisional

Probab=94.20  E-value=0.25  Score=48.13  Aligned_cols=98  Identities=18%  Similarity=0.219  Sum_probs=62.4

Q ss_pred             ccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHHhc
Q 017490          175 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASK  249 (370)
Q Consensus       175 l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~  249 (370)
                      +.|++|+++|= +++.++++..+..+|++|....+..-....  .    +      .+......+    ...++++.++.
T Consensus       150 l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~--~----~------~~~~~~~~g~~~~~~~d~~~a~~~  217 (304)
T PRK00779        150 LKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDP--E----I------VEKIAKETGASIEVTHDPKEAVKG  217 (304)
T ss_pred             cCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCH--H----H------HHHHHHHcCCeEEEEcCHHHHhCC
Confidence            78999999997 889999999999999999998764321100  0    0      000011111    24689999999


Q ss_pred             CCEEEEec----cCC---hh-----hhcccCHHHHhcCCCCcEEEEc
Q 017490          250 ADVVVCCL----SLN---KQ-----TAGIVNKSFLSSMKKGSLLVNI  284 (370)
Q Consensus       250 aDiV~l~l----P~t---~~-----t~~li~~~~l~~mk~gailIN~  284 (370)
                      +|+|..-.    ...   .+     ...-++++.++.+|+++++.-+
T Consensus       218 aDvvy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHp  264 (304)
T PRK00779        218 ADVVYTDVWVSMGQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHC  264 (304)
T ss_pred             CCEEEecCccccccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecC
Confidence            99998741    110   01     1234566667667777666554

>PRK08328 hypothetical protein; Provisional

Probab=94.19  E-value=0.041  Score=51.33  Aligned_cols=44  Identities=30%  Similarity=0.442  Sum_probs=36.6

Q ss_pred             cCCCCcccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCC
Q 017490          167 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  210 (370)
Q Consensus       167 ~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~  210 (370)
                      |+......|.+++|.|+|+|.+|.++|+.|...|. ++..+|...
T Consensus        17 ~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~   61 (231)
T PRK08328         17 FGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT   61 (231)
T ss_pred             cCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            54444467899999999999999999999999898 688888653

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=94.14  E-value=0.064  Score=52.00  Aligned_cols=100  Identities=19%  Similarity=0.235  Sum_probs=57.3

Q ss_pred             EEEEecCchhHHHHHHhccCC--CEEEEEcCCCccccccccccchhhhcccccccccc-ccCCCCCHHHHHhcCCEEEEe
Q 017490          180 VFILGFGNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVVCC  256 (370)
Q Consensus       180 vGIiGlG~IG~~vA~~l~~~G--~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~l~  256 (370)
                      |+|||.|.+|..+|..+...|  .++..+|++........   .++.....   .... ......+ .+.++.||+|+++
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~---~DL~~~~~---~~~~~~i~~~~~-~~~l~~aDiVIit   73 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDA---LDLSHASA---FLATGTIVRGGD-YADAADADIVVIT   73 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHH---HhHHHhcc---ccCCCeEEECCC-HHHhCCCCEEEEc
Confidence            589999999999999988777  58999998754321100   01100000   0000 0001123 4688999999999


Q ss_pred             ccCChh---hhc-cc--CH-------HHHhcCCCCcEEEEcCC
Q 017490          257 LSLNKQ---TAG-IV--NK-------SFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       257 lP~t~~---t~~-li--~~-------~~l~~mk~gailIN~sR  286 (370)
                      ......   +|- ++  |.       ..+....|.+++|+.+.
T Consensus        74 ag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sN  116 (300)
T cd00300          74 AGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSN  116 (300)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence            763211   111 11  11       22444568899999984

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>cd08230 glucose_DH Glucose dehydrogenase

Probab=94.14  E-value=0.052  Score=53.33  Aligned_cols=92  Identities=16%  Similarity=0.245  Sum_probs=56.9

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCC---ccccccccccchhhhcccccccc-ccccC-CCCCHHH--HHh
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW---ASHSQVSCQSSALAVKNGIIDDL-VDEKG-CHEDIFE--FAS  248 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~l~e--ll~  248 (370)
                      .|.+|.|+|.|.||...++.++..|++|++++++.   .+....              .++ +.... ...++.+  ...
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~--------------~~~Ga~~v~~~~~~~~~~~~~~  237 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIV--------------EELGATYVNSSKTPVAEVKLVG  237 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH--------------HHcCCEEecCCccchhhhhhcC
Confidence            58899999999999999999999999999998742   111000              000 00000 0111111  123


Q ss_pred             cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          249 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       249 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                      ..|+|+-++....    .+ .+.++.|+++..++.++.
T Consensus       238 ~~d~vid~~g~~~----~~-~~~~~~l~~~G~~v~~G~  270 (355)
T cd08230         238 EFDLIIEATGVPP----LA-FEALPALAPNGVVILFGV  270 (355)
T ss_pred             CCCEEEECcCCHH----HH-HHHHHHccCCcEEEEEec
Confidence            5788888875321    12 346677888888887764

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=94.11  E-value=0.28  Score=50.26  Aligned_cols=109  Identities=17%  Similarity=0.130  Sum_probs=72.3

Q ss_pred             ccCceEEEEec----CchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHh
Q 017490          175 LLGKTVFILGF----GNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS  248 (370)
Q Consensus       175 l~g~tvGIiGl----G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  248 (370)
                      ++-++|.|||.    |.+|..+.+.++..|+  +|+.+++.....                  ...   ..+.+++++-.
T Consensus         5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i------------------~G~---~~~~sl~~lp~   63 (447)
T TIGR02717         5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEI------------------LGV---KAYPSVLEIPD   63 (447)
T ss_pred             cCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCcc------------------CCc---cccCCHHHCCC
Confidence            56679999999    8899999999998887  798888763320                  111   14567888877


Q ss_pred             cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEE-EcCCCcc-----cCHHHHHHHHHhCCceEE
Q 017490          249 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLV-NIARGGL-----LDYEAIAHYLECGHLGGL  307 (370)
Q Consensus       249 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailI-N~sRg~~-----vd~~aL~~aL~~g~i~ga  307 (370)
                      ..|++++++|. +.+..++.+  +....-.+++| ..+-++.     -.+++|.+..+++.++-.
T Consensus        64 ~~Dlavi~vp~-~~~~~~l~e--~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvl  125 (447)
T TIGR02717        64 PVDLAVIVVPA-KYVPQVVEE--CGEKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLL  125 (447)
T ss_pred             CCCEEEEecCH-HHHHHHHHH--HHhcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEE
Confidence            88999999994 344444432  22233344444 3332332     235788888888877643

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=94.06  E-value=0.13  Score=50.27  Aligned_cols=91  Identities=12%  Similarity=0.128  Sum_probs=55.8

Q ss_pred             cCceEEEEecCchhHHHHHHhcc-CC-CEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHh--cCC
Q 017490          176 LGKTVFILGFGNIGVELAKRLRP-FG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KAD  251 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~-~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aD  251 (370)
                      .|.+|.|+|.|.||...++.++. +| .+|++++++..+..                  .+...+.....+++..  ..|
T Consensus       163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~------------------~a~~~~~~~~~~~~~~~~g~d  224 (341)
T cd08237         163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLD------------------LFSFADETYLIDDIPEDLAVD  224 (341)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHH------------------HHhhcCceeehhhhhhccCCc
Confidence            48899999999999999888875 54 68999998754421                  1111110011112222  368


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                      +|+-++... .+...+ ...++.+++|..++.++-
T Consensus       225 ~viD~~G~~-~~~~~~-~~~~~~l~~~G~iv~~G~  257 (341)
T cd08237         225 HAFECVGGR-GSQSAI-NQIIDYIRPQGTIGLMGV  257 (341)
T ss_pred             EEEECCCCC-ccHHHH-HHHHHhCcCCcEEEEEee
Confidence            888877631 011112 246778899988888764

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.91  E-value=0.07  Score=54.24  Aligned_cols=119  Identities=17%  Similarity=0.184  Sum_probs=68.3

Q ss_pred             cccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhc-CCE
Q 017490          174 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK-ADV  252 (370)
Q Consensus       174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~-aDi  252 (370)
                      ++.|+++.|+|.|.+|.++|+.|+..|++|.+.|+...........   +.      ......... ....+++.. .|+
T Consensus         2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~---l~------~~g~~~~~~-~~~~~~~~~~~d~   71 (447)
T PRK02472          2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQE---LL------EEGIKVICG-SHPLELLDEDFDL   71 (447)
T ss_pred             CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHH---HH------hcCCEEEeC-CCCHHHhcCcCCE
Confidence            3678999999999999999999999999999999764321100000   00      000000000 122334444 898


Q ss_pred             EEEec--cCC-hh-----h--hcccCHHHH-hcC-CCCcEEEEcCCCcccCHHHHHHHHHhC
Q 017490          253 VVCCL--SLN-KQ-----T--AGIVNKSFL-SSM-KKGSLLVNIARGGLLDYEAIAHYLECG  302 (370)
Q Consensus       253 V~l~l--P~t-~~-----t--~~li~~~~l-~~m-k~gailIN~sRg~~vd~~aL~~aL~~g  302 (370)
                      |+..-  |.+ +.     .  ..++....| ..+ +...+-|--+.|..-...-+...|+..
T Consensus        72 vV~s~gi~~~~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~  133 (447)
T PRK02472         72 MVKNPGIPYTNPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAG  133 (447)
T ss_pred             EEECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHC
Confidence            87753  222 21     0  112332222 233 334555666678888888888888753

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.83  E-value=0.063  Score=54.64  Aligned_cols=119  Identities=24%  Similarity=0.266  Sum_probs=68.6

Q ss_pred             cccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEE
Q 017490          174 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  253 (370)
Q Consensus       174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  253 (370)
                      .+.+|++.|+|.|.+|.++|+.|...|++|.++|+........ .. ..+.       ............++....+|+|
T Consensus         2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~-~~-~~l~-------~~~~~~~~~~~~~~~~~~~d~v   72 (450)
T PRK14106          2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKE-AL-EELG-------ELGIELVLGEYPEEFLEGVDLV   72 (450)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHH-HH-HHHH-------hcCCEEEeCCcchhHhhcCCEE
Confidence            4679999999999999999999999999999999864221100 00 0000       0000000112223556789999


Q ss_pred             EEeccCChhhh--------cc--cC-HHHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHh
Q 017490          254 VCCLSLNKQTA--------GI--VN-KSFLSS-MKKGSLLVNIARGGLLDYEAIAHYLEC  301 (370)
Q Consensus       254 ~l~lP~t~~t~--------~l--i~-~~~l~~-mk~gailIN~sRg~~vd~~aL~~aL~~  301 (370)
                      +.+.-..+...        ++  +. .+.+.. .+...+-|--+.|..-..+-|...|+.
T Consensus        73 v~~~g~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~  132 (450)
T PRK14106         73 VVSPGVPLDSPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKN  132 (450)
T ss_pred             EECCCCCCCCHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence            88643322221        11  11 112222 232344455567888888888888875

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=93.77  E-value=0.31  Score=46.19  Aligned_cols=137  Identities=15%  Similarity=0.205  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEecCchhHHHHHHhccC----CC-------EEEEEcC
Q 017490          140 CAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPF----GV-------KIIATKR  208 (370)
Q Consensus       140 vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~----G~-------~V~~~dr  208 (370)
                      +|--+++-+++.+|-.                ++.|++.++.|+|.|..|-.+|+.+...    |.       +++.+|+
T Consensus         4 TaaV~lAgll~Al~~~----------------g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~   67 (255)
T PF03949_consen    4 TAAVVLAGLLNALRVT----------------GKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDS   67 (255)
T ss_dssp             HHHHHHHHHHHHHHHH----------------TS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEET
T ss_pred             hHHHHHHHHHHHHHHh----------------CCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEec
Confidence            5567778888888753                5679999999999999999999998776    87       4899987


Q ss_pred             CCccccccccccchhhhccccccccccccCC---CCCHHHHHhcC--CEEEEeccCChhhhcccCHHHHhcCCC---CcE
Q 017490          209 SWASHSQVSCQSSALAVKNGIIDDLVDEKGC---HEDIFEFASKA--DVVVCCLSLNKQTAGIVNKSFLSSMKK---GSL  280 (370)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~ell~~a--DiV~l~lP~t~~t~~li~~~~l~~mk~---gai  280 (370)
                      ..--...-.    ++....   ..+......   ..+|.|+++.+  |+++-+-    ...++++++.++.|.+   ..+
T Consensus        68 ~Gll~~~r~----~l~~~~---~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S----~~~g~ft~evv~~Ma~~~erPI  136 (255)
T PF03949_consen   68 KGLLTDDRE----DLNPHK---KPFARKTNPEKDWGSLLEAVKGAKPTVLIGLS----GQGGAFTEEVVRAMAKHNERPI  136 (255)
T ss_dssp             TEEEBTTTS----SHSHHH---HHHHBSSSTTT--SSHHHHHHCH--SEEEECS----SSTTSS-HHHHHHCHHHSSSEE
T ss_pred             cceEeccCc----cCChhh---hhhhccCcccccccCHHHHHHhcCCCEEEEec----CCCCcCCHHHHHHHhccCCCCE
Confidence            632100000    000000   111222112   24899999988  9887652    2567899999999987   899


Q ss_pred             EEEcCCCcccCHHHHHHHHHhCC
Q 017490          281 LVNIARGGLLDYEAIAHYLECGH  303 (370)
Q Consensus       281 lIN~sRg~~vd~~aL~~aL~~g~  303 (370)
                      +.=.|+...--|-.-.++.+-+.
T Consensus       137 IF~LSNPt~~aE~~peda~~~t~  159 (255)
T PF03949_consen  137 IFPLSNPTPKAECTPEDAYEWTD  159 (255)
T ss_dssp             EEE-SSSCGGSSS-HHHHHHTTT
T ss_pred             EEECCCCCCcccCCHHHHHhhCC
Confidence            99999987744444445555443

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=93.73  E-value=0.095  Score=55.98  Aligned_cols=93  Identities=17%  Similarity=0.160  Sum_probs=57.9

Q ss_pred             CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHH----HHhcCCE
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFE----FASKADV  252 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e----ll~~aDi  252 (370)
                      ...|-|+|+|++|+.+|+.|.+.|.++++.|.+++........            +...-++...+.+-    -++++|.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~------------g~~v~~GDat~~~~L~~agi~~A~~  467 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF------------GMKVFYGDATRMDLLESAGAAKAEV  467 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc------------CCeEEEEeCCCHHHHHhcCCCcCCE
Confidence            3578899999999999999999999999999876542111000            00001122233322    2458999


Q ss_pred             EEEeccCChhhhcccCHHHHhcCCCCcEEEE
Q 017490          253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVN  283 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN  283 (370)
                      |+++++..+.+..+.  ...+.+.|...++-
T Consensus       468 vvv~~~d~~~n~~i~--~~ar~~~p~~~iia  496 (621)
T PRK03562        468 LINAIDDPQTSLQLV--ELVKEHFPHLQIIA  496 (621)
T ss_pred             EEEEeCCHHHHHHHH--HHHHHhCCCCeEEE
Confidence            999998766554442  23444455555543

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=93.70  E-value=0.19  Score=50.25  Aligned_cols=89  Identities=22%  Similarity=0.283  Sum_probs=58.3

Q ss_pred             ccCceEEEEecC----------chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHH
Q 017490          175 LLGKTVFILGFG----------NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIF  244 (370)
Q Consensus       175 l~g~tvGIiGlG----------~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  244 (370)
                      |.||||||+|+-          .-...++++|+..|.+|.+|||-......                .......-..+++
T Consensus       308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~----------------~~~~~~~~~~~~~  371 (414)
T COG1004         308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAF----------------RNFPDVELESDAE  371 (414)
T ss_pred             CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHH----------------hcCCCceEeCCHH
Confidence            899999999984          34677899999999999999986433110                0000011236899


Q ss_pred             HHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEE
Q 017490          245 EFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVN  283 (370)
Q Consensus       245 ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN  283 (370)
                      ++++.||+++++... ++.+.+ +-+.+ .|| +.++++
T Consensus       372 ~~~~~aDaivi~tew-~ef~~~-d~~~~-~m~-~~~v~D  406 (414)
T COG1004         372 EALKGADAIVINTEW-DEFRDL-DFEKL-LMK-TPVVID  406 (414)
T ss_pred             HHHhhCCEEEEeccH-HHHhcc-Chhhh-hcc-CCEEEe
Confidence            999999999998653 333333 33333 565 344444

>PRK13529 malate dehydrogenase; Provisional

Probab=93.69  E-value=1.5  Score=46.06  Aligned_cols=176  Identities=15%  Similarity=0.171  Sum_probs=111.8

Q ss_pred             cCCCCeEEEEeCcccCc-cchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccc
Q 017490           97 RANQMKLIMQFGVGLEG-VDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETL  175 (370)
Q Consensus        97 ~~~~Lk~I~~~~~G~d~-id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l  175 (370)
                      ..|+. +|+.--.+..+ +.+..--+..|.+.|+-      -..+|-.+++.+++.+|-.                +..|
T Consensus       237 ~~P~~-~I~~EDf~~~~af~iL~ryr~~i~~FnDD------iQGTaaV~LAgll~A~r~~----------------g~~l  293 (563)
T PRK13529        237 RFPNA-LLQFEDFAQKNARRILERYRDEICTFNDD------IQGTGAVTLAGLLAALKIT----------------GEPL  293 (563)
T ss_pred             hCCCe-EEehhhcCCchHHHHHHHhccCCCeeccc------cchHHHHHHHHHHHHHHHh----------------CCCh
Confidence            35775 66666555443 44444445578998862      2457778889999988842                5678


Q ss_pred             cCceEEEEecCchhHHHHHHhcc----CCC-------EEEEEcCCCcccc--ccccc-cchhhhccccccccccccCCCC
Q 017490          176 LGKTVFILGFGNIGVELAKRLRP----FGV-------KIIATKRSWASHS--QVSCQ-SSALAVKNGIIDDLVDEKGCHE  241 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~----~G~-------~V~~~dr~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~  241 (370)
                      .+.++.|+|.|..|..+|+.+..    .|.       +++.+|+..--..  ..... -..|.-....... ........
T Consensus       294 ~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~-~~~~~~~~  372 (563)
T PRK13529        294 SDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELAD-WDTEGDVI  372 (563)
T ss_pred             hhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhcccccc-cccccCCC
Confidence            99999999999999999998875    587       7999997642100  00000 0001000000000 00001225


Q ss_pred             CHHHHHhcC--CEEEEeccCChhhhcccCHHHHhcCCC---CcEEEEcCCCcccCHHHHHHHHH
Q 017490          242 DIFEFASKA--DVVVCCLSLNKQTAGIVNKSFLSSMKK---GSLLVNIARGGLLDYEAIAHYLE  300 (370)
Q Consensus       242 ~l~ell~~a--DiV~l~lP~t~~t~~li~~~~l~~mk~---gailIN~sRg~~vd~~aL~~aL~  300 (370)
                      +|.++++.+  |+++-+-    ...+.++++.++.|.+   ..++.=.|+...--|-.-.+|.+
T Consensus       373 ~L~e~v~~~kPtvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~  432 (563)
T PRK13529        373 SLLEVVRNVKPTVLIGVS----GQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIA  432 (563)
T ss_pred             CHHHHHhccCCCEEEEec----CCCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHH
Confidence            899999987  9887641    2347899999999977   89999999887744544444554

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=93.67  E-value=0.13  Score=52.30  Aligned_cols=38  Identities=37%  Similarity=0.335  Sum_probs=34.2

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      +..+++.|+|+|.+|+.+++.|...|.+|+++|++++.
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~  266 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPER  266 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHH
Confidence            45789999999999999999999999999999987653

>PRK11891 aspartate carbamoyltransferase; Provisional

Probab=93.58  E-value=0.2  Score=50.93  Aligned_cols=98  Identities=18%  Similarity=0.227  Sum_probs=62.1

Q ss_pred             cccCceEEEEec---CchhHHHHHHhccC-CCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHH
Q 017490          174 TLLGKTVFILGF---GNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFE  245 (370)
Q Consensus       174 ~l~g~tvGIiGl---G~IG~~vA~~l~~~-G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~e  245 (370)
                      .+.|++|++||-   +++..+++..+..+ |++|....+..-..  +..          . .+.+...+    ...++++
T Consensus       238 ~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~--~~~----------~-~~~~~~~G~~v~~~~d~~e  304 (429)
T PRK11891        238 IVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEM--PAY----------I-VEQISRNGHVIEQTDDLAA  304 (429)
T ss_pred             CcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCcccc--CHH----------H-HHHHHhcCCeEEEEcCHHH
Confidence            488999999998   48889999988776 99999887642210  000          0 01111111    2478999


Q ss_pred             HHhcCCEEEEeccCChh----------hhcccCHHHHhc-CCCCcEEEEc
Q 017490          246 FASKADVVVCCLSLNKQ----------TAGIVNKSFLSS-MKKGSLLVNI  284 (370)
Q Consensus       246 ll~~aDiV~l~lP~t~~----------t~~li~~~~l~~-mk~gailIN~  284 (370)
                      .++.+|+|....--.+.          ....++++.++. .|+++++.-+
T Consensus       305 av~~ADVVYt~~~q~er~~~~~~~~~~~~y~vt~ell~~~ak~dai~MHc  354 (429)
T PRK11891        305 GLRGADVVYATRIQKERFADESFEGYTPDFQINQALVDAVCKPDTLIMHP  354 (429)
T ss_pred             HhCCCCEEEEcCchhhcccCHHHHHhccCCcCCHHHHhCccCCCcEEECC
Confidence            99999999884421000          123456677776 6777776654

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=93.57  E-value=0.055  Score=45.80  Aligned_cols=34  Identities=41%  Similarity=0.598  Sum_probs=29.9

Q ss_pred             CceEEEEecCchhHHHHHHhccCCC-EEEEEcCCC
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  210 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~  210 (370)
                      .++|.|+|+|.+|..+|+.|...|+ ++..+|...
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI   36 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence            5799999999999999999998898 799999754

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK14851 hypothetical protein; Provisional

Probab=93.52  E-value=0.2  Score=54.02  Aligned_cols=181  Identities=14%  Similarity=0.088  Sum_probs=92.7

Q ss_pred             cccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCcccccccc-c----cch------------hhhcccccc-c
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSC-Q----SSA------------LAVKNGIID-D  232 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~-~----~~~------------~~~~~~~~~-~  232 (370)
                      ...|++++|+|+|+|.+|..+|..|...|. ++..+|...-.. .... +    ..+            +...+..+. +
T Consensus        38 Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~-sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~  116 (679)
T PRK14851         38 QERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEP-VNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEIT  116 (679)
T ss_pred             HHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecc-cccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEE
Confidence            457899999999999999999999998887 677776432110 0000 0    000            000000000 0


Q ss_pred             cccccCCCCCHHHHHhcCCEEEEeccC-ChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEec
Q 017490          233 LVDEKGCHEDIFEFASKADVVVCCLSL-NKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV  311 (370)
Q Consensus       233 ~~~~~~~~~~l~ell~~aDiV~l~lP~-t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV  311 (370)
                      ........+++++++..+|+|+-|+-. +-+++.+++....   +.+.-+|..+-.+.-   ..+....-+.+.  .-|.
T Consensus       117 ~~~~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~---~~~iP~i~~g~~G~~---g~~~~~~p~~~~--~~~~  188 (679)
T PRK14851        117 PFPAGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAR---EKGIPVITAGPLGYS---SAMLVFTPQGMG--FDDY  188 (679)
T ss_pred             EEecCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHH---HCCCCEEEeeccccc---ceEEEEcCCCCC--HhHh
Confidence            000011224567788899998877743 1234555554322   234445554411100   000000000000  0112


Q ss_pred             CCCC-----------------CCCCCCcccCCCceEEccCCCCccHHHHHHHHHHHHHHHHHHHcCC
Q 017490          312 AWTE-----------------PFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGT  361 (370)
Q Consensus       312 ~~~E-----------------Pl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~~~g~  361 (370)
                      |+-+                 |-+..+...+..+|-++-+-+-.+.-+....+........+++.|+
T Consensus       189 ~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (679)
T PRK14851        189 FNIGGKMPEEQKYLRFAMGLAPRPTHIKYMDLSKVDLKGGKGPSLNIACQLCSGMAGTEAVRIILGK  255 (679)
T ss_pred             ccCCCCCChHHHHHHHHhcCCCcchhhccCcHhhcCCccCcCCCccHHHHhhhhhHHHHHHHHhhcC
Confidence            2221                 3233344557777878888777777777777777777777766554

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=93.51  E-value=0.14  Score=40.93  Aligned_cols=67  Identities=15%  Similarity=0.129  Sum_probs=41.9

Q ss_pred             CceEEEEecCchhHHHHHHh-ccCCCE-EEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhc--CCE
Q 017490          177 GKTVFILGFGNIGVELAKRL-RPFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK--ADV  252 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l-~~~G~~-V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDi  252 (370)
                      ..++.|+|+|+.|++++... ...|++ +.++|.++...-                 +.....--+.+++++.+.  .|+
T Consensus         3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G-----------------~~i~gipV~~~~~~l~~~~~i~i   65 (96)
T PF02629_consen    3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIG-----------------KEIGGIPVYGSMDELEEFIEIDI   65 (96)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTT-----------------SEETTEEEESSHHHHHHHCTTSE
T ss_pred             CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccC-----------------cEECCEEeeccHHHhhhhhCCCE
Confidence            35799999999999997644 345665 466776654310                 001100023467777666  999


Q ss_pred             EEEeccCC
Q 017490          253 VVCCLSLN  260 (370)
Q Consensus       253 V~l~lP~t  260 (370)
                      -++++|..
T Consensus        66 aii~VP~~   73 (96)
T PF02629_consen   66 AIITVPAE   73 (96)
T ss_dssp             EEEES-HH
T ss_pred             EEEEcCHH
Confidence            99999943

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=93.43  E-value=0.4  Score=46.84  Aligned_cols=65  Identities=20%  Similarity=0.071  Sum_probs=47.2

Q ss_pred             ccCceEEEEec---CchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490          175 LLGKTVFILGF---GNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  250 (370)
Q Consensus       175 l~g~tvGIiGl---G~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  250 (370)
                      +.|.+|+++|=   +++.++++..+..+|+ +|....+..-.   +..             ..........++++.++.+
T Consensus       155 l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~---p~~-------------~~~~~~~~~~d~~ea~~~a  218 (310)
T PRK13814        155 WNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLL---PDK-------------VGNDSIKKFTELKPSLLNS  218 (310)
T ss_pred             cCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccC---cCc-------------cccceEEEEcCHHHHhCCC
Confidence            77999999997   6999999999999999 89888764211   000             0001111246899999999


Q ss_pred             CEEEE
Q 017490          251 DVVVC  255 (370)
Q Consensus       251 DiV~l  255 (370)
                      |+|..
T Consensus       219 Dvvy~  223 (310)
T PRK13814        219 DVIVT  223 (310)
T ss_pred             CEEEE
Confidence            99976

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=93.35  E-value=0.11  Score=39.74  Aligned_cols=34  Identities=35%  Similarity=0.494  Sum_probs=30.7

Q ss_pred             eEEEEecCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      ++.|||.|.+|-++|..++.+|.+|..+++....
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~   34 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL   34 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence            5789999999999999999999999999887543

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=93.34  E-value=0.83  Score=47.04  Aligned_cols=42  Identities=24%  Similarity=0.294  Sum_probs=36.7

Q ss_pred             CcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          171 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       171 ~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      ......|++|+|||.|.-|...|..|...|+.|++|++....
T Consensus       117 ~~~~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~  158 (457)
T COG0493         117 LPGSRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALD  158 (457)
T ss_pred             CCCCCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCC
Confidence            344677899999999999999999999999999999986543

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.33  E-value=0.092  Score=54.41  Aligned_cols=36  Identities=25%  Similarity=0.487  Sum_probs=33.3

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCC
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      +.+++|+|+|+|..|.++|+.|+..|++|.++|...
T Consensus         5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   40 (498)
T PRK02006          5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTRE   40 (498)
T ss_pred             cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence            568899999999999999999999999999999754

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=93.29  E-value=0.08  Score=47.65  Aligned_cols=67  Identities=24%  Similarity=0.319  Sum_probs=44.0

Q ss_pred             eEEEEecCchhHHHHHH--hccCCCEE-EEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHh--cCCEE
Q 017490          179 TVFILGFGNIGVELAKR--LRPFGVKI-IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADVV  253 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~--l~~~G~~V-~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV  253 (370)
                      ++.|||.|++|++++..  .+..||++ -+||..++.--.             ...+ + ......++++.++  +.|+.
T Consensus        86 nviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~-------------~~~~-v-~V~~~d~le~~v~~~dv~ia  150 (211)
T COG2344          86 NVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGT-------------KIGD-V-PVYDLDDLEKFVKKNDVEIA  150 (211)
T ss_pred             eEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCc-------------ccCC-e-eeechHHHHHHHHhcCccEE
Confidence            68899999999999875  34689985 578876542100             0000 0 0012356777777  68899


Q ss_pred             EEeccCC
Q 017490          254 VCCLSLN  260 (370)
Q Consensus       254 ~l~lP~t  260 (370)
                      ++|+|..
T Consensus       151 iLtVPa~  157 (211)
T COG2344         151 ILTVPAE  157 (211)
T ss_pred             EEEccHH
Confidence            9999953

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=93.23  E-value=0.24  Score=49.02  Aligned_cols=94  Identities=18%  Similarity=0.207  Sum_probs=56.3

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCC---CCHHHHHhcCCE
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCH---EDIFEFASKADV  252 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~ell~~aDi  252 (370)
                      .|++|.|.|.|.+|...++.++.+|.+|++.+.+..+.......            -.++.....   ..+.+.....|+
T Consensus       183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~------------~Ga~~vi~~~~~~~~~~~~~~~D~  250 (360)
T PLN02586        183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINR------------LGADSFLVSTDPEKMKAAIGTMDY  250 (360)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHh------------CCCcEEEcCCCHHHHHhhcCCCCE
Confidence            58899999999999999999999999998877654321000000            000000001   122233334688


Q ss_pred             EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                      |+-++.....    + ...++.+++|..++.++.
T Consensus       251 vid~~g~~~~----~-~~~~~~l~~~G~iv~vG~  279 (360)
T PLN02586        251 IIDTVSAVHA----L-GPLLGLLKVNGKLITLGL  279 (360)
T ss_pred             EEECCCCHHH----H-HHHHHHhcCCcEEEEeCC
Confidence            8877542111    1 235677888888887764

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.22  E-value=0.098  Score=53.55  Aligned_cols=113  Identities=20%  Similarity=0.201  Sum_probs=67.9

Q ss_pred             cccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEE
Q 017490          174 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  253 (370)
Q Consensus       174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  253 (370)
                      ++.|++|.|+|+|..|.+.|+.|+..|++|.++|.......  .     +.      ...+ +.... + .+-+.++|+|
T Consensus         6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~--~-----l~------~~g~-~~~~~-~-~~~~~~~d~v   69 (460)
T PRK01390          6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRA--K-----AA------AAGI-TTADL-R-TADWSGFAAL   69 (460)
T ss_pred             ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHH--H-----HH------hcCc-cccCC-C-hhHHcCCCEE
Confidence            46789999999999999999999999999999996533210  0     00      0000 01111 1 1234678988


Q ss_pred             EEe--ccCC-h----hh---hc----ccCH-HHHhc-C-----CCCcEEEEcCCCcccCHHHHHHHHHhC
Q 017490          254 VCC--LSLN-K----QT---AG----IVNK-SFLSS-M-----KKGSLLVNIARGGLLDYEAIAHYLECG  302 (370)
Q Consensus       254 ~l~--lP~t-~----~t---~~----li~~-~~l~~-m-----k~gailIN~sRg~~vd~~aL~~aL~~g  302 (370)
                      +..  +|.+ +    ..   +.    ++.+ +.+.+ +     +...+-|.-+.|..-..+-|...|+..
T Consensus        70 v~sp~i~~~~~~~~~~v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~  139 (460)
T PRK01390         70 VLSPGVPLTHPKPHWVVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREA  139 (460)
T ss_pred             EECCCCCccCCcccHHHHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence            753  2321 1    11   11    1332 22222 2     334566666789998888888888863

>PRK07877 hypothetical protein; Provisional

Probab=93.22  E-value=0.25  Score=53.54  Aligned_cols=99  Identities=13%  Similarity=0.121  Sum_probs=61.1

Q ss_pred             cccccCceEEEEecCchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhc-----------------cccc-c
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVK-----------------NGII-D  231 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~-----------------~~~~-~  231 (370)
                      ...|++++|+|+|+| +|..+|..|...|.  ++..+|...-.. ..... +-|...                 +..+ .
T Consensus       102 Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~-sNLnR-q~~~~~diG~~Kv~~a~~~l~~inp~i~v  178 (722)
T PRK07877        102 QERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLEL-SNLNR-VPAGVFDLGVNKAVVAARRIAELDPYLPV  178 (722)
T ss_pred             HHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcc-ccccc-ccCChhhcccHHHHHHHHHHHHHCCCCEE
Confidence            356899999999999 99999999998883  788877543211 00000 000000                 0000 0


Q ss_pred             ccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhc
Q 017490          232 DLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSS  274 (370)
Q Consensus       232 ~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~  274 (370)
                      +...+....+++++++..+|+|+-|+- +-+++.+++....+.
T Consensus       179 ~~~~~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~  220 (722)
T PRK07877        179 EVFTDGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARAR  220 (722)
T ss_pred             EEEeccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence            000111123468889999999988876 568888888766554

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=93.22  E-value=0.18  Score=56.65  Aligned_cols=110  Identities=14%  Similarity=0.125  Sum_probs=65.9

Q ss_pred             cccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcccc---ccccccc-----hh-------hh-cccccccccc--
Q 017490          174 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHS---QVSCQSS-----AL-------AV-KNGIIDDLVD--  235 (370)
Q Consensus       174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~---~~~~~~~-----~~-------~~-~~~~~~~~~~--  235 (370)
                      .+.-.++.|+|.|++|+..++.+..+|++ . .++..-+..   .+.....     .|       .+ ..+.+...++  
T Consensus       200 gv~P~~vVi~G~G~Vg~gA~~i~~~lg~~-~-v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~  277 (1042)
T PLN02819        200 GICPLVFVFTGSGNVSQGAQEIFKLLPHT-F-VEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKA  277 (1042)
T ss_pred             CCCCeEEEEeCCchHHHHHHHHHhhcCCC-c-cCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchh
Confidence            34457899999999999999999999887 2 222110000   0000000     00       00 0000000000  


Q ss_pred             ccC----CCC-C-HHHHHhcCCEEEEeccCChhhhcccCHH-HHhcCCCCc----EEEEcC
Q 017490          236 EKG----CHE-D-IFEFASKADVVVCCLSLNKQTAGIVNKS-FLSSMKKGS----LLVNIA  285 (370)
Q Consensus       236 ~~~----~~~-~-l~ell~~aDiV~l~lP~t~~t~~li~~~-~l~~mk~ga----ilIN~s  285 (370)
                      ++.    .+. . +++.++.+|+|+.|+...+.+..++.++ ..+.||+|.    +++|+|
T Consensus       278 ~y~~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs  338 (1042)
T PLN02819        278 DYYAHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDIT  338 (1042)
T ss_pred             hhccCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEc
Confidence            000    011 1 4578899999999998888788899988 777899998    888876

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=93.17  E-value=0.16  Score=50.29  Aligned_cols=87  Identities=16%  Similarity=0.166  Sum_probs=50.0

Q ss_pred             cCceEEEEec-CchhHHHHHHhccCCC---EEEEE--cCCCccccccccccchhhhccccccccccccC-CCCCHHHHHh
Q 017490          176 LGKTVFILGF-GNIGVELAKRLRPFGV---KIIAT--KRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFAS  248 (370)
Q Consensus       176 ~g~tvGIiGl-G~IG~~vA~~l~~~G~---~V~~~--dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~  248 (370)
                      ...+|+|+|. |.+|+++.+.|...++   ++..+  .++..+..         ..      .. .... ...+. +.+.
T Consensus         6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~---------~~------~~-~~~~v~~~~~-~~~~   68 (344)
T PLN02383          6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKV---------TF------EG-RDYTVEELTE-DSFD   68 (344)
T ss_pred             CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCee---------ee------cC-ceeEEEeCCH-HHHc
Confidence            3568999995 9999999999987555   33332  22222110         00      00 0000 11122 3457


Q ss_pred             cCCEEEEeccCChhhhcccCHHHHhc-CCCCcEEEEcC
Q 017490          249 KADVVVCCLSLNKQTAGIVNKSFLSS-MKKGSLLVNIA  285 (370)
Q Consensus       249 ~aDiV~l~lP~t~~t~~li~~~~l~~-mk~gailIN~s  285 (370)
                      .+|+|++++|.. ....+     ... .+.|+.+||.|
T Consensus        69 ~~D~vf~a~p~~-~s~~~-----~~~~~~~g~~VIDlS  100 (344)
T PLN02383         69 GVDIALFSAGGS-ISKKF-----GPIAVDKGAVVVDNS  100 (344)
T ss_pred             CCCEEEECCCcH-HHHHH-----HHHHHhCCCEEEECC
Confidence            899999999854 22222     222 24688888888

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=93.16  E-value=0.26  Score=48.02  Aligned_cols=76  Identities=18%  Similarity=0.350  Sum_probs=49.7

Q ss_pred             eEEEEec-CchhHHHHHHhccC-CCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEe
Q 017490          179 TVFILGF-GNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  256 (370)
Q Consensus       179 tvGIiGl-G~IG~~vA~~l~~~-G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  256 (370)
                      +|+|+|. |..|.++.++|... .+++.........                          ...+.+++++++|+++++
T Consensus         3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~~--------------------------~~~~~~~~~~~~D~vFla   56 (310)
T TIGR01851         3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRRK--------------------------DAAERAKLLNAADVAILC   56 (310)
T ss_pred             eEEEECCCChhHHHHHHHHhCCCCeEEEEEeccccc--------------------------CcCCHhHhhcCCCEEEEC
Confidence            7999995 99999999999865 3455554321100                          112455677899999999


Q ss_pred             ccCChhhhcccCHHHHhcCCCCcEEEEcC
Q 017490          257 LSLNKQTAGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       257 lP~t~~t~~li~~~~l~~mk~gailIN~s  285 (370)
                      +|.. ....+..  .+  .+.|..+||.|
T Consensus        57 lp~~-~s~~~~~--~~--~~~g~~VIDlS   80 (310)
T TIGR01851        57 LPDD-AAREAVS--LV--DNPNTCIIDAS   80 (310)
T ss_pred             CCHH-HHHHHHH--HH--HhCCCEEEECC
Confidence            9954 2332221  11  24688889888

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=93.11  E-value=1.3  Score=46.60  Aligned_cols=137  Identities=15%  Similarity=0.190  Sum_probs=93.7

Q ss_pred             cCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEecCchhHHHHHHhcc--
Q 017490          121 RCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRP--  198 (370)
Q Consensus       121 ~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~--  198 (370)
                      +..|.+.|+-      -..+|-.+++.+++.+|-.                ++.|...++.|+|.|..|..+|+.+..  
T Consensus       287 r~~i~~FnDD------iQGTaaV~lAgll~A~r~~----------------g~~l~d~riv~~GAGsAgigia~ll~~~~  344 (581)
T PLN03129        287 RTTHLCFNDD------IQGTAAVALAGLLAALRAT----------------GGDLADQRILFAGAGEAGTGIAELIALAM  344 (581)
T ss_pred             ccCCCEeccc------cchHHHHHHHHHHHHHHHh----------------CCchhhceEEEECCCHHHHHHHHHHHHHH
Confidence            4588888862      2457778889999988842                567999999999999999999998876  


Q ss_pred             ---CCC-------EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhc--CCEEEEeccCChhhhcc
Q 017490          199 ---FGV-------KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK--ADVVVCCLSLNKQTAGI  266 (370)
Q Consensus       199 ---~G~-------~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~l~lP~t~~t~~l  266 (370)
                         .|.       +++.+|+..--...-.+   .+..+.   ..++.......+|.|+++.  .|+++-+-    ...++
T Consensus       345 ~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~---~l~~~k---~~fa~~~~~~~~L~e~v~~vkptvLIG~S----~~~g~  414 (581)
T PLN03129        345 SRQTGISEEEARKRIWLVDSKGLVTKSRKD---SLQPFK---KPFAHDHEPGASLLEAVKAIKPTVLIGLS----GVGGT  414 (581)
T ss_pred             HhhcCCChhhhcCcEEEEcCCCeEeCCCCc---cChHHH---HHHHhhcccCCCHHHHHhccCCCEEEEec----CCCCC
Confidence               476       78999876421100000   000000   0111111134689999998  89887652    12378


Q ss_pred             cCHHHHhcCC---CCcEEEEcCCCcc
Q 017490          267 VNKSFLSSMK---KGSLLVNIARGGL  289 (370)
Q Consensus       267 i~~~~l~~mk---~gailIN~sRg~~  289 (370)
                      ++++.++.|.   +..++.=.|+...
T Consensus       415 Ft~evi~~Ma~~~~rPIIFaLSNPt~  440 (581)
T PLN03129        415 FTKEVLEAMASLNERPIIFALSNPTS  440 (581)
T ss_pred             CCHHHHHHHHhcCCCCEEEECCCCCC
Confidence            9999999995   8899999888753

>PRK10206 putative oxidoreductase; Provisional

Probab=93.07  E-value=0.12  Score=50.99  Aligned_cols=64  Identities=14%  Similarity=0.188  Sum_probs=41.2

Q ss_pred             eEEEEecCchhHH-HHHHh-cc-CCCEEE-EEcCCCccccccccccchhhhccccccccccccC---CCCCHHHHHh--c
Q 017490          179 TVFILGFGNIGVE-LAKRL-RP-FGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFAS--K  249 (370)
Q Consensus       179 tvGIiGlG~IG~~-vA~~l-~~-~G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~--~  249 (370)
                      ++||||+|.|++. .+..+ .. -+++|. ++|++.+..                  +....++   .+.+++++++  +
T Consensus         3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~------------------~~~~~~~~~~~~~~~~ell~~~~   64 (344)
T PRK10206          3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE------------------EQAPIYSHIHFTSDLDEVLNDPD   64 (344)
T ss_pred             EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH------------------HHHHhcCCCcccCCHHHHhcCCC
Confidence            7999999998763 34434 32 367775 577764321                  0111111   3578999996  5


Q ss_pred             CCEEEEeccCC
Q 017490          250 ADVVVCCLSLN  260 (370)
Q Consensus       250 aDiV~l~lP~t  260 (370)
                      .|+|++++|..
T Consensus        65 iD~V~I~tp~~   75 (344)
T PRK10206         65 VKLVVVCTHAD   75 (344)
T ss_pred             CCEEEEeCCch
Confidence            79999999954

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=93.07  E-value=0.95  Score=44.10  Aligned_cols=153  Identities=18%  Similarity=0.179  Sum_probs=83.5

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEec
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  257 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  257 (370)
                      ++|.|+|.|.||..++.+|...|..|...-|.........   ..+.....  ..............+.+..+|+|++++
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~---~GL~i~~~--~~~~~~~~~~~~~~~~~~~~Dlviv~v   75 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKK---KGLRIEDE--GGNFTTPVVAATDAEALGPADLVIVTV   75 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHh---CCeEEecC--CCccccccccccChhhcCCCCEEEEEe
Confidence            4799999999999999999999988888777653100000   01111000  000000011123345566899999997


Q ss_pred             cCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCC-cccCCCceEEccCCC
Q 017490          258 SLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPND-PILKFKNVLITPHVG  336 (370)
Q Consensus       258 P~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~-pL~~~~nvilTPHia  336 (370)
                      -.. ++...+ +...+..++.+.++-.-.| +-.++.+-+.+...++. .|+..+...--.+.+ .......+.+.+..+
T Consensus        76 Ka~-q~~~al-~~l~~~~~~~t~vl~lqNG-~g~~e~l~~~~~~~~il-~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~  151 (307)
T COG1893          76 KAY-QLEEAL-PSLAPLLGPNTVVLFLQNG-LGHEEELRKILPKETVL-GGVTTHGAVREGPGHVVHTGLGDTVIGELRG  151 (307)
T ss_pred             ccc-cHHHHH-HHhhhcCCCCcEEEEEeCC-CcHHHHHHHhCCcceEE-EEEeeeeeEecCCceEEEecCCcEEEccCCC
Confidence            643 344333 3455667788777755444 34455566666655454 233333221111122 233456777777766


Q ss_pred             Ccc
Q 017490          337 GVT  339 (370)
Q Consensus       337 ~~t  339 (370)
                      +..
T Consensus       152 ~~~  154 (307)
T COG1893         152 GRD  154 (307)
T ss_pred             Cch
Confidence            555

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=93.04  E-value=0.19  Score=45.24  Aligned_cols=71  Identities=15%  Similarity=0.132  Sum_probs=49.1

Q ss_pred             ceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEe
Q 017490          178 KTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  256 (370)
Q Consensus       178 ~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  256 (370)
                      ++|+|||. |.+|..+++.++..|++|.++-|++.+...-..    ..       -........+++.+.+..-|+|+.+
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~----~~-------i~q~Difd~~~~a~~l~g~DaVIsA   69 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQG----VT-------ILQKDIFDLTSLASDLAGHDAVISA   69 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccccc----ce-------eecccccChhhhHhhhcCCceEEEe
Confidence            47999996 999999999999999999999998765311000    00       0001111345566788899999988


Q ss_pred             ccC
Q 017490          257 LSL  259 (370)
Q Consensus       257 lP~  259 (370)
                      .-.
T Consensus        70 ~~~   72 (211)
T COG2910          70 FGA   72 (211)
T ss_pred             ccC
Confidence            654

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=93.03  E-value=0.19  Score=49.08  Aligned_cols=102  Identities=18%  Similarity=0.108  Sum_probs=58.4

Q ss_pred             eEEEEec-CchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEE
Q 017490          179 TVFILGF-GNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  255 (370)
Q Consensus       179 tvGIiGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  255 (370)
                      +|+|||. |.||..+|..+...|.  ++..+|... ..-...+.    .  +..............++.+.++.||+|++
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~-a~g~a~DL----~--~~~~~~~i~~~~~~~~~~~~~~daDivvi   73 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG-AAGVAADL----S--HIPTAASVKGFSGEEGLENALKGADVVVI   73 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC-CcEEEchh----h--cCCcCceEEEecCCCchHHHcCCCCEEEE
Confidence            5899999 9999999998875554  799999865 21111111    0  00000000000001235678999999999


Q ss_pred             eccCC--h-hhh-ccc--CHH-------HHhcCCCCcEEEEcCCC
Q 017490          256 CLSLN--K-QTA-GIV--NKS-------FLSSMKKGSLLVNIARG  287 (370)
Q Consensus       256 ~lP~t--~-~t~-~li--~~~-------~l~~mk~gailIN~sRg  287 (370)
                      +.-..  + .+| .++  |.+       .+..-.|.+++|+++..
T Consensus        74 taG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNP  118 (312)
T TIGR01772        74 PAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNP  118 (312)
T ss_pred             eCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence            86532  1 122 122  221       34445789999999654

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PRK06128 oxidoreductase; Provisional

Probab=93.02  E-value=0.23  Score=47.63  Aligned_cols=36  Identities=25%  Similarity=0.288  Sum_probs=31.8

Q ss_pred             cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCC
Q 017490          174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRS  209 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~  209 (370)
                      .+.||++.|.|. |.||+.+|+.|...|++|++..+.
T Consensus        52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~   88 (300)
T PRK06128         52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYLP   88 (300)
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence            478999999996 999999999999999999877654

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=92.96  E-value=0.14  Score=50.67  Aligned_cols=93  Identities=24%  Similarity=0.290  Sum_probs=58.3

Q ss_pred             eEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC-CCC-CH----HHHH--hc
Q 017490          179 TVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHE-DI----FEFA--SK  249 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~l----~ell--~~  249 (370)
                      +|.|+|.|.||...+..++.+|. +|++.|+++.+.......            ...+... ... +.    .++.  ..
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~------------~g~~~~~~~~~~~~~~~~~~~t~g~g  238 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEA------------GGADVVVNPSEDDAGAEILELTGGRG  238 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHh------------CCCeEeecCccccHHHHHHHHhCCCC
Confidence            99999999999999999999997 688888876552111000            0000000 011 11    1222  24


Q ss_pred             CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490          250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~  288 (370)
                      +|+++-|.. ++.+   + ...++..++|..++.++-.+
T Consensus       239 ~D~vie~~G-~~~~---~-~~ai~~~r~gG~v~~vGv~~  272 (350)
T COG1063         239 ADVVIEAVG-SPPA---L-DQALEALRPGGTVVVVGVYG  272 (350)
T ss_pred             CCEEEECCC-CHHH---H-HHHHHHhcCCCEEEEEeccC
Confidence            899999987 2221   1 35677789998888887643

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=92.95  E-value=0.16  Score=49.51  Aligned_cols=88  Identities=17%  Similarity=0.168  Sum_probs=56.4

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCC--CCC-HHHHHhcCCE
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC--HED-IFEFASKADV  252 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-l~ell~~aDi  252 (370)
                      .|.+|.|.|.|.+|...++.++..|++|++.+++..+.                  +.+.+.+.  .-+ .++.-...|+
T Consensus       165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~------------------~~a~~~Ga~~vi~~~~~~~~~~d~  226 (329)
T TIGR02822       165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAAR------------------RLALALGAASAGGAYDTPPEPLDA  226 (329)
T ss_pred             CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHH------------------HHHHHhCCceeccccccCcccceE
Confidence            48899999999999999999999999999988775442                  11112210  000 0000123576


Q ss_pred             EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                      ++.+.... .   .+ ...++.+++|..++.++.
T Consensus       227 ~i~~~~~~-~---~~-~~~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       227 AILFAPAG-G---LV-PPALEALDRGGVLAVAGI  255 (329)
T ss_pred             EEECCCcH-H---HH-HHHHHhhCCCcEEEEEec
Confidence            66654432 2   12 356778899998888774

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PLN02342 ornithine carbamoyltransferase

Probab=92.89  E-value=0.6  Score=46.31  Aligned_cols=102  Identities=14%  Similarity=0.031  Sum_probs=62.8

Q ss_pred             cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccc-cccCCCCCHHHHHhcCC
Q 017490          174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV-DEKGCHEDIFEFASKAD  251 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~~aD  251 (370)
                      .+.|++|+++|= .++.++++..+..+|++|...-|..-..  +... .+.      +.+.. .......++++.++.+|
T Consensus       191 ~l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~--~~~~-~~~------a~~~g~~~~~~~~d~~eav~~aD  261 (348)
T PLN02342        191 RLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEP--DAKT-VEK------ARAAGISKIEITNDPAEAVKGAD  261 (348)
T ss_pred             CcCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCccccc--CHHH-HHH------HHHhCCCcEEEEcCHHHHhCCCC
Confidence            378999999996 4678888888899999999887643211  0000 000      00000 01112468999999999


Q ss_pred             EEEEec----cCChh--------hhcccCHHHHhcCCCCcEEEEc
Q 017490          252 VVVCCL----SLNKQ--------TAGIVNKSFLSSMKKGSLLVNI  284 (370)
Q Consensus       252 iV~l~l----P~t~~--------t~~li~~~~l~~mk~gailIN~  284 (370)
                      +|..-.    -..+.        ..+.++++.++.+|+++++.-+
T Consensus       262 Vvy~~~W~s~~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHp  306 (348)
T PLN02342        262 VVYTDVWASMGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHC  306 (348)
T ss_pred             EEEECCccccccchhhHHHHHhccCCccCHHHHhccCCCcEEeCC
Confidence            998752    11110        1245677777777777777655

>PRK06349 homoserine dehydrogenase; Provisional

Probab=92.85  E-value=0.28  Score=49.96  Aligned_cols=108  Identities=19%  Similarity=0.193  Sum_probs=61.3

Q ss_pred             ceEEEEecCchhHHHHHHhccC----------CCEEE-EEcCCCccccccccccchhhhccccccccccccCCCCCHHHH
Q 017490          178 KTVFILGFGNIGVELAKRLRPF----------GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF  246 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~----------G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  246 (370)
                      .+|||+|+|.||+.+++.+...          +++|. ++|++..+... .              .. .......+++++
T Consensus         4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~-~--------------~~-~~~~~~~d~~~l   67 (426)
T PRK06349          4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRG-V--------------DL-PGILLTTDPEEL   67 (426)
T ss_pred             EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccC-C--------------CC-cccceeCCHHHH
Confidence            4799999999999998877432          45544 45665433100 0              00 000124678898


Q ss_pred             Hh--cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHhCCce
Q 017490          247 AS--KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLL-DYEAIAHYLECGHLG  305 (370)
Q Consensus       247 l~--~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~v-d~~aL~~aL~~g~i~  305 (370)
                      +.  +.|+|+.+++.......+    ..+.|+.|.-+|...-+... .-++|.++.++....
T Consensus        68 l~d~~iDvVve~tg~~~~~~~~----~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~  125 (426)
T PRK06349         68 VNDPDIDIVVELMGGIEPAREL----ILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVD  125 (426)
T ss_pred             hhCCCCCEEEECCCCchHHHHH----HHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCc
Confidence            85  579999988653221111    22445666555543222222 236677777776654

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=92.83  E-value=0.15  Score=47.27  Aligned_cols=38  Identities=32%  Similarity=0.455  Sum_probs=34.2

Q ss_pred             cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      .+.||++.|.|. |.||+.+|+.|...|++|++.+|+..
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~   45 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPA   45 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            478999999995 99999999999999999999998743

>PRK02102 ornithine carbamoyltransferase; Validated

Probab=92.79  E-value=0.36  Score=47.60  Aligned_cols=102  Identities=18%  Similarity=0.185  Sum_probs=60.9

Q ss_pred             cccCceEEEEecC--chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHH
Q 017490          174 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFA  247 (370)
Q Consensus       174 ~l~g~tvGIiGlG--~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell  247 (370)
                      .+.|++|++||-+  ++.++++..+..+|++|...-|..-..  +..    +.   +.+.+.....+    ...++++.+
T Consensus       152 ~l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~--~~~----~~---~~~~~~~~~~g~~~~~~~d~~ea~  222 (331)
T PRK02102        152 PLKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWP--EEE----LV---ALAREIAKETGAKITITEDPEEAV  222 (331)
T ss_pred             CCCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCccccc--CHH----HH---HHHHHHHHHcCCeEEEEcCHHHHh
Confidence            3789999999987  788999999999999999887642211  000    00   00000111111    236899999


Q ss_pred             hcCCEEEEeccCC-------hh-----hhcccCHHHHh-cCCCCcEEEEc
Q 017490          248 SKADVVVCCLSLN-------KQ-----TAGIVNKSFLS-SMKKGSLLVNI  284 (370)
Q Consensus       248 ~~aDiV~l~lP~t-------~~-----t~~li~~~~l~-~mk~gailIN~  284 (370)
                      +++|+|..-+=..       ++     ...-++++.++ .+|+++++.-+
T Consensus       223 ~~aDvvyt~~w~~~~~~~~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~  272 (331)
T PRK02102        223 KGADVIYTDVWVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHC  272 (331)
T ss_pred             CCCCEEEEcCcccCccccchHHHHHhccCCcCCHHHHhhhcCCCCEEECC
Confidence            9999998843100       01     12334556666 35666666544

>TIGR00658 orni_carb_tr ornithine carbamoyltransferase

Probab=92.76  E-value=0.68  Score=45.05  Aligned_cols=101  Identities=18%  Similarity=0.213  Sum_probs=62.7

Q ss_pred             ccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHHhc
Q 017490          175 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASK  249 (370)
Q Consensus       175 l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~  249 (370)
                      +.|.+|+++|- +++-++++..+..+|++|...-|..-....  .    +.   +.+.+.....+    ...++++.+++
T Consensus       146 l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~--~----~~---~~~~~~~~~~g~~~~~~~d~~~a~~~  216 (304)
T TIGR00658       146 LKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDA--D----IV---KKAQEIAKENGGSVELTHDPVEAVKG  216 (304)
T ss_pred             CCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCH--H----HH---HHHHHHHHHcCCeEEEEcCHHHHhCC
Confidence            78999999996 788899999999999999998764321100  0    00   00000011111    23689999999


Q ss_pred             CCEEEEec--cCC-----h-----hhhcccCHHHHhcCCCCcEEEEc
Q 017490          250 ADVVVCCL--SLN-----K-----QTAGIVNKSFLSSMKKGSLLVNI  284 (370)
Q Consensus       250 aDiV~l~l--P~t-----~-----~t~~li~~~~l~~mk~gailIN~  284 (370)
                      +|+|..-.  ...     +     .....++++.++.+|+++++.-+
T Consensus       217 aDvvy~~~w~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHp  263 (304)
T TIGR00658       217 ADVIYTDVWVSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHC  263 (304)
T ss_pred             CCEEEEcCcccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECC
Confidence            99998742  100     0     01235667777777777776655

Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.

>PLN00106 malate dehydrogenase

Probab=92.75  E-value=0.3  Score=47.96  Aligned_cols=107  Identities=16%  Similarity=0.085  Sum_probs=62.2

Q ss_pred             cCceEEEEec-CchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCE
Q 017490          176 LGKTVFILGF-GNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  252 (370)
Q Consensus       176 ~g~tvGIiGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  252 (370)
                      ..++|+|+|. |.||..+|..|...|.  ++..+|..... ....+.    .-..  ............++.+.++.||+
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~-g~a~Dl----~~~~--~~~~i~~~~~~~d~~~~l~~aDi   89 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTP-GVAADV----SHIN--TPAQVRGFLGDDQLGDALKGADL   89 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCC-eeEchh----hhCC--cCceEEEEeCCCCHHHHcCCCCE
Confidence            3469999999 9999999999874444  89999986621 111110    0000  00001110123456788999999


Q ss_pred             EEEeccC--Ch-hhhc-cc--CH-------HHHhcCCCCcEEEEcCCCcc
Q 017490          253 VVCCLSL--NK-QTAG-IV--NK-------SFLSSMKKGSLLVNIARGGL  289 (370)
Q Consensus       253 V~l~lP~--t~-~t~~-li--~~-------~~l~~mk~gailIN~sRg~~  289 (370)
                      |+++.-.  .+ .++. ++  |.       +.+....|.+++++++..--
T Consensus        90 VVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD  139 (323)
T PLN00106         90 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVN  139 (323)
T ss_pred             EEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence            9987542  21 1221 22  11       12444568999999977653

>PRK14852 hypothetical protein; Provisional

Probab=92.75  E-value=0.62  Score=51.88  Aligned_cols=183  Identities=16%  Similarity=0.124  Sum_probs=96.1

Q ss_pred             cCCCCcccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccc----cc------------hhhhcccc
Q 017490          167 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQ----SS------------ALAVKNGI  229 (370)
Q Consensus       167 ~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~----~~------------~~~~~~~~  229 (370)
                      |+......|+.++|+|+|+|.+|..+|+.|...|. ++...|...-...--..+    ..            .+...+..
T Consensus       322 ig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~  401 (989)
T PRK14852        322 VDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPF  401 (989)
T ss_pred             cCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCC
Confidence            43333457999999999999999999999998887 577766432110000000    00            00000000


Q ss_pred             cc-ccccccCCCCCHHHHHhcCCEEEEeccCCh-hhhcccCHHHHhcCCCCcEEEEcCCCcc------------cCH---
Q 017490          230 ID-DLVDEKGCHEDIFEFASKADVVVCCLSLNK-QTAGIVNKSFLSSMKKGSLLVNIARGGL------------LDY---  292 (370)
Q Consensus       230 ~~-~~~~~~~~~~~l~ell~~aDiV~l~lP~t~-~t~~li~~~~l~~mk~gailIN~sRg~~------------vd~---  292 (370)
                      +. +...+....++++++++.+|+|+-|+-... +.+..++...   .+.+.-+|..+-.+.            ..+   
T Consensus       402 v~I~~~~~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c---~~~~IP~I~ag~~G~~g~v~v~~p~~~~~~~~f  478 (989)
T PRK14852        402 LDIRSFPEGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRA---LELGIPVITAGPLGYSCALLVFMPGGMNFDSYF  478 (989)
T ss_pred             CeEEEEecCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHH---HHcCCCEEEeeccccCeeEEEEcCCCCCHHHhC
Confidence            00 000011123567788999999998875421 2333333222   234455555543111            000   


Q ss_pred             ------HHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceEEccCCCCccHHHHHHHHHHHHHHHHHHHcCC
Q 017490          293 ------EAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGT  361 (370)
Q Consensus       293 ------~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~~~g~  361 (370)
                            ..+...|+      .++   ...|-+-.-..++..+|-+.-+.+-.+..+....+..+++.+.+++-|+
T Consensus       479 ~~~~~~p~~~~~~~------~~l---~~~p~~~~~~~~~~~~~~l~~~~~Ps~~~~~~l~a~~~~~~~~killg~  544 (989)
T PRK14852        479 GIDDDTPPMEGYLR------FGM---GLAPRPAHLGYMDRRFVSLHDRRGPSLDIACHLCAGMAATEAVRILLHR  544 (989)
T ss_pred             CCCCCCchHhhhhh------hhc---cCCcchhhhcccCcccccccccCCCchHHHHHHhHHHHHHHHHHHHhCC
Confidence                  00111111      011   1112111123345666666667777788888888889999999998777

>PTZ00325 malate dehydrogenase; Provisional

Probab=92.74  E-value=0.33  Score=47.66  Aligned_cols=108  Identities=18%  Similarity=0.110  Sum_probs=60.2

Q ss_pred             cccCceEEEEec-CchhHHHHHHhcc--CCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490          174 TLLGKTVFILGF-GNIGVELAKRLRP--FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  250 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~IG~~vA~~l~~--~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  250 (370)
                      .++.++|+|+|. |.||..+|..+..  ...++..+|+.... ....+.    .  +..............+..+.++.|
T Consensus         5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~-g~a~Dl----~--~~~~~~~v~~~td~~~~~~~l~ga   77 (321)
T PTZ00325          5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAP-GVAADL----S--HIDTPAKVTGYADGELWEKALRGA   77 (321)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCc-ccccch----h--hcCcCceEEEecCCCchHHHhCCC
Confidence            356779999999 9999999999884  44589999983211 111110    0  000000000000112336789999


Q ss_pred             CEEEEeccCChh---hh-cccCH------HH---HhcCCCCcEEEEcCCCc
Q 017490          251 DVVVCCLSLNKQ---TA-GIVNK------SF---LSSMKKGSLLVNIARGG  288 (370)
Q Consensus       251 DiV~l~lP~t~~---t~-~li~~------~~---l~~mk~gailIN~sRg~  288 (370)
                      |+|++++-....   ++ .++..      ..   +..-.+.++++.++-+-
T Consensus        78 DvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPv  128 (321)
T PTZ00325         78 DLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV  128 (321)
T ss_pred             CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence            999988653211   11 12221      22   33346677888887653

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.73  E-value=0.13  Score=53.03  Aligned_cols=117  Identities=21%  Similarity=0.179  Sum_probs=68.7

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEE
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  254 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  254 (370)
                      +.||+|+|+|+|.-|.+.|+.|...|++|+++|...........   .+       .+.........+ .+.+.++|+|+
T Consensus         6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~---~l-------~~~~~~~~~~~~-~~~~~~~d~vV   74 (468)
T PRK04690          6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVG---AL-------ADAALLVETEAS-AQRLAAFDVVV   74 (468)
T ss_pred             cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHH---HH-------hhcCEEEeCCCC-hHHccCCCEEE
Confidence            56899999999999999999999999999999965332111000   00       000000001112 34567889887


Q ss_pred             Ee--ccCC-hhh-------hcccCHHH--Hhc-CC-----CCcEEEEcCCCcccCHHHHHHHHHhC
Q 017490          255 CC--LSLN-KQT-------AGIVNKSF--LSS-MK-----KGSLLVNIARGGLLDYEAIAHYLECG  302 (370)
Q Consensus       255 l~--lP~t-~~t-------~~li~~~~--l~~-mk-----~gailIN~sRg~~vd~~aL~~aL~~g  302 (370)
                      ..  +|.+ |..       ..++.+-.  +.. ++     ...+-|--+.|..-...-+.+.|+..
T Consensus        75 ~SpgI~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~  140 (468)
T PRK04690         75 KSPGISPYRPEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAA  140 (468)
T ss_pred             ECCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhc
Confidence            75  3322 211       12344333  333 32     23556666678888888888888753

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=92.72  E-value=0.26  Score=48.12  Aligned_cols=77  Identities=21%  Similarity=0.319  Sum_probs=49.1

Q ss_pred             ceEEEEe-cCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEE
Q 017490          178 KTVFILG-FGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  255 (370)
Q Consensus       178 ~tvGIiG-lG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  255 (370)
                      .+|+|+| .|.+|+++.+.|..... ++.....+...                   ..       .+.++.+.++|+|++
T Consensus         3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~-------------------~~-------~~~~~~~~~~DvvFl   56 (313)
T PRK11863          3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK-------------------DA-------AARRELLNAADVAIL   56 (313)
T ss_pred             cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC-------------------cc-------cCchhhhcCCCEEEE
Confidence            4799999 69999999999987553 55544322111                   00       123455678999999


Q ss_pred             eccCChhhhcccCHHHHhcCCCCcEEEEcC
Q 017490          256 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       256 ~lP~t~~t~~li~~~~l~~mk~gailIN~s  285 (370)
                      ++|...+ ..+. .+ +  .+.|..+||.|
T Consensus        57 alp~~~s-~~~~-~~-~--~~~g~~VIDlS   81 (313)
T PRK11863         57 CLPDDAA-REAV-AL-I--DNPATRVIDAS   81 (313)
T ss_pred             CCCHHHH-HHHH-HH-H--HhCCCEEEECC
Confidence            9995422 2221 11 1  24688899888

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=92.68  E-value=0.38  Score=46.87  Aligned_cols=33  Identities=30%  Similarity=0.279  Sum_probs=28.4

Q ss_pred             ceEEEEec-CchhHHHHHHhccCCC--EEEEEcCCC
Q 017490          178 KTVFILGF-GNIGVELAKRLRPFGV--KIIATKRSW  210 (370)
Q Consensus       178 ~tvGIiGl-G~IG~~vA~~l~~~G~--~V~~~dr~~  210 (370)
                      ++|+|+|. |.+|..+|..+...|.  +|+.+|+..
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~   36 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPK   36 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcc
Confidence            47999998 9999999999987776  599999853

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=92.65  E-value=0.063  Score=48.88  Aligned_cols=44  Identities=30%  Similarity=0.453  Sum_probs=36.4

Q ss_pred             cCCCCcccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCC
Q 017490          167 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  210 (370)
Q Consensus       167 ~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~  210 (370)
                      |+....+.|++++|.|+|+|.+|.++|+.|...|. ++..+|...
T Consensus         9 ~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~   53 (198)
T cd01485           9 WGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL   53 (198)
T ss_pred             cCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            54444467899999999999999999999998898 588888653

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>CHL00194 ycf39 Ycf39; Provisional

Probab=92.65  E-value=0.15  Score=49.27  Aligned_cols=71  Identities=14%  Similarity=0.210  Sum_probs=46.1

Q ss_pred             ceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCCCCHHHHHhcCCEEEE
Q 017490          178 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVVC  255 (370)
Q Consensus       178 ~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~l  255 (370)
                      ++|.|.| .|.||+.+++.|...|++|.+..|+..+......        .+  .+.+. ......++.+.++.+|+|+.
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~--------~~--v~~v~~Dl~d~~~l~~al~g~d~Vi~   70 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKE--------WG--AELVYGDLSLPETLPPSFKGVTAIID   70 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhh--------cC--CEEEECCCCCHHHHHHHHCCCCEEEE
Confidence            3789999 5999999999999999999999987533110000        00  01110 01123457778899999887


Q ss_pred             ecc
Q 017490          256 CLS  258 (370)
Q Consensus       256 ~lP  258 (370)
                      +.+
T Consensus        71 ~~~   73 (317)
T CHL00194         71 AST   73 (317)
T ss_pred             CCC
Confidence            644

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=92.64  E-value=0.34  Score=45.34  Aligned_cols=94  Identities=21%  Similarity=0.240  Sum_probs=56.2

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHh---cCC
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS---KAD  251 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~aD  251 (370)
                      +.|++|.=||+|.  ..++.-++..|++|++.|.+.+........    . .    ...+.--......+++..   +-|
T Consensus        58 l~g~~vLDvGCGg--G~Lse~mAr~Ga~VtgiD~se~~I~~Ak~h----a-~----e~gv~i~y~~~~~edl~~~~~~FD  126 (243)
T COG2227          58 LPGLRVLDVGCGG--GILSEPLARLGASVTGIDASEKPIEVAKLH----A-L----ESGVNIDYRQATVEDLASAGGQFD  126 (243)
T ss_pred             CCCCeEEEecCCc--cHhhHHHHHCCCeeEEecCChHHHHHHHHh----h-h----hccccccchhhhHHHHHhcCCCcc
Confidence            8999999999983  578888888899999999876542111000    0 0    001110012245666665   679


Q ss_pred             EEEE-----eccCChhhhcccCHHHHhcCCCCcEEEE
Q 017490          252 VVVC-----CLSLNKQTAGIVNKSFLSSMKKGSLLVN  283 (370)
Q Consensus       252 iV~l-----~lP~t~~t~~li~~~~l~~mk~gailIN  283 (370)
                      +|++     |+|....    +-+...+.+|||.+++-
T Consensus       127 vV~cmEVlEHv~dp~~----~~~~c~~lvkP~G~lf~  159 (243)
T COG2227         127 VVTCMEVLEHVPDPES----FLRACAKLVKPGGILFL  159 (243)
T ss_pred             EEEEhhHHHccCCHHH----HHHHHHHHcCCCcEEEE
Confidence            8876     4443221    22346677899876653

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=92.62  E-value=0.25  Score=46.79  Aligned_cols=69  Identities=16%  Similarity=0.075  Sum_probs=46.0

Q ss_pred             eEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccc-cccCCCCCHHHHH------hc-
Q 017490          179 TVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV-DEKGCHEDIFEFA------SK-  249 (370)
Q Consensus       179 tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell------~~-  249 (370)
                      +|.|+|. |.+|+.+++.|...|++|.+..|++.+.... .            .+.. ......+++.+.+      .. 
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~-~------------~~~~~~d~~d~~~l~~a~~~~~~~~g~   67 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGP-N------------EKHVKFDWLDEDTWDNPFSSDDGMEPE   67 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCC-C------------CccccccCCCHHHHHHHHhcccCcCCc
Confidence            4778886 9999999999999999999999986542110 0            0011 0111234566666      45 


Q ss_pred             CCEEEEeccCC
Q 017490          250 ADVVVCCLSLN  260 (370)
Q Consensus       250 aDiV~l~lP~t  260 (370)
                      +|.|+++.|..
T Consensus        68 ~d~v~~~~~~~   78 (285)
T TIGR03649        68 ISAVYLVAPPI   78 (285)
T ss_pred             eeEEEEeCCCC
Confidence            89999887754

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.61  E-value=0.22  Score=45.72  Aligned_cols=38  Identities=29%  Similarity=0.502  Sum_probs=34.1

Q ss_pred             cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      .+.++++.|+|. |.||+.+++.|...|++|++++|+..
T Consensus         2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~   40 (251)
T PRK07231          2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEE   40 (251)
T ss_pred             CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            467899999995 89999999999999999999998754

>PRK08265 short chain dehydrogenase; Provisional

Probab=92.50  E-value=0.3  Score=45.63  Aligned_cols=39  Identities=23%  Similarity=0.272  Sum_probs=34.7

Q ss_pred             ccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          173 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       173 ~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      ..++|+++.|.|. |.||+++|+.|...|++|++.+|+..
T Consensus         2 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~   41 (261)
T PRK08265          2 IGLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDAD   41 (261)
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            3578999999996 99999999999999999999998754

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=92.48  E-value=0.11  Score=50.44  Aligned_cols=38  Identities=26%  Similarity=0.443  Sum_probs=34.6

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCcc
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  212 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~  212 (370)
                      -.|+|++|+|+|.+|.+++.-++++|. +++++|.++++
T Consensus       191 ~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~K  229 (375)
T KOG0022|consen  191 EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDK  229 (375)
T ss_pred             CCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHH
Confidence            368999999999999999999999998 89999988665

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=92.46  E-value=0.18  Score=49.64  Aligned_cols=90  Identities=16%  Similarity=0.177  Sum_probs=51.0

Q ss_pred             CceEEEEec-CchhHHHHHHhccCCCE---EEEEcCCCccccccccccchhhhccccccccccccCCCCCHH-HHHhcCC
Q 017490          177 GKTVFILGF-GNIGVELAKRLRPFGVK---IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIF-EFASKAD  251 (370)
Q Consensus       177 g~tvGIiGl-G~IG~~vA~~l~~~G~~---V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-ell~~aD  251 (370)
                      +++|+|+|. |.+|+++++.|...|+.   +.++.+.......       +.. .     . ... ...+++ ..+..+|
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~-------l~~-~-----g-~~i-~v~d~~~~~~~~vD   65 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKE-------LSF-K-----G-KEL-KVEDLTTFDFSGVD   65 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCe-------eee-C-----C-cee-EEeeCCHHHHcCCC
Confidence            468999995 99999999999886653   4555433222100       000 0     0 000 011111 2347899


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                      +|+.|+|.. .++.+.. +   .++.|+++|+.|.
T Consensus        66 vVf~A~g~g-~s~~~~~-~---~~~~G~~VIDlS~   95 (334)
T PRK14874         66 IALFSAGGS-VSKKYAP-K---AAAAGAVVIDNSS   95 (334)
T ss_pred             EEEECCChH-HHHHHHH-H---HHhCCCEEEECCc
Confidence            999999854 2222221 1   1356889998874

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=92.45  E-value=3.8  Score=38.15  Aligned_cols=41  Identities=15%  Similarity=0.132  Sum_probs=35.8

Q ss_pred             cccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      ..+++|++|.|||.|.++..=++.|..+|++|.++.+...+
T Consensus        20 ~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~   60 (223)
T PRK05562         20 SLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSK   60 (223)
T ss_pred             EEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCH
Confidence            45678999999999999999889999999999999876543

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=92.41  E-value=0.29  Score=48.45  Aligned_cols=37  Identities=19%  Similarity=0.374  Sum_probs=32.6

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCcc
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  212 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~  212 (370)
                      .|.+|.|.|.|.+|...++.++..|+ +|++.+++..+
T Consensus       191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r  228 (371)
T cd08281         191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDK  228 (371)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHH
Confidence            47899999999999999999999999 69998876544

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PRK08192 aspartate carbamoyltransferase; Provisional

Probab=92.30  E-value=0.41  Score=47.34  Aligned_cols=71  Identities=14%  Similarity=0.112  Sum_probs=46.4

Q ss_pred             ccccCceEEEEec---CchhHHHHHHhc-cCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHH
Q 017490          173 ETLLGKTVFILGF---GNIGVELAKRLR-PFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIF  244 (370)
Q Consensus       173 ~~l~g~tvGIiGl---G~IG~~vA~~l~-~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~  244 (370)
                      ..+.|++|+++|=   +++..+++..+. -+|++|....+..-..  +..    +       .+.....+    ...+++
T Consensus       155 ~~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~--~~~----~-------~~~~~~~g~~~~~~~d~~  221 (338)
T PRK08192        155 RGIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAM--PDY----V-------ISDIENAGHKITITDQLE  221 (338)
T ss_pred             CCcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccC--CHH----H-------HHHHHHcCCeEEEEcCHH
Confidence            3588999999997   577888888765 4599998887642110  000    0       00011111    236899


Q ss_pred             HHHhcCCEEEEe
Q 017490          245 EFASKADVVVCC  256 (370)
Q Consensus       245 ell~~aDiV~l~  256 (370)
                      +.++.+|+|..-
T Consensus       222 ea~~~aDvvyt~  233 (338)
T PRK08192        222 GNLDKADILYLT  233 (338)
T ss_pred             HHHccCCEEEEc
Confidence            999999999873

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.23  E-value=0.16  Score=52.32  Aligned_cols=38  Identities=21%  Similarity=0.329  Sum_probs=34.4

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCC
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      ..+.+++|.|+|.|.+|.++|+.|+..|++|.++|+..
T Consensus        12 ~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~   49 (480)
T PRK01438         12 SDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGD   49 (480)
T ss_pred             cCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            45678999999999999999999999999999999654

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=92.18  E-value=0.16  Score=43.36  Aligned_cols=32  Identities=34%  Similarity=0.517  Sum_probs=28.9

Q ss_pred             eEEEEecCchhHHHHHHhccCCC-EEEEEcCCC
Q 017490          179 TVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  210 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~  210 (370)
                      +|.|+|+|.+|.++|+.|...|. ++..+|...
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT   33 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence            58999999999999999999998 799998764

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.18  E-value=0.17  Score=51.52  Aligned_cols=119  Identities=12%  Similarity=0.124  Sum_probs=67.7

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEE
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  254 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  254 (370)
                      +.++++.|+|.|.+|.++|+.|+..|++|.++|.........  .   +.   .. ...+. ...-...+..+..+|+|+
T Consensus         3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~--~---l~---~~-~~gi~-~~~g~~~~~~~~~~d~vv   72 (445)
T PRK04308          3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVA--Q---IG---KM-FDGLV-FYTGRLKDALDNGFDILA   72 (445)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHH--H---Hh---hc-cCCcE-EEeCCCCHHHHhCCCEEE
Confidence            568999999999999999999999999999999764331000  0   00   00 00000 000011233456789888


Q ss_pred             Ee--ccC-Chhhh-------cccC-HHHHhc-CC---CCcEEEEcCCCcccCHHHHHHHHHhCC
Q 017490          255 CC--LSL-NKQTA-------GIVN-KSFLSS-MK---KGSLLVNIARGGLLDYEAIAHYLECGH  303 (370)
Q Consensus       255 l~--lP~-t~~t~-------~li~-~~~l~~-mk---~gailIN~sRg~~vd~~aL~~aL~~g~  303 (370)
                      ..  +|. .|...       .++. .+.+.. ++   ...+-|--+.|..-...-+...|+...
T Consensus        73 ~spgi~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g  136 (445)
T PRK04308         73 LSPGISERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCG  136 (445)
T ss_pred             ECCCCCCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence            75  322 22221       1222 223333 32   234555556788877777888887543

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=92.17  E-value=0.16  Score=53.39  Aligned_cols=38  Identities=24%  Similarity=0.350  Sum_probs=33.5

Q ss_pred             ccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          175 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       175 l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      -.|+++.|.|. |.||+.+++.|...|++|++++|+...
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ek  116 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQR  116 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence            46889999996 999999999999999999999887543

>PRK14804 ornithine carbamoyltransferase; Provisional

Probab=92.11  E-value=0.59  Score=45.67  Aligned_cols=72  Identities=19%  Similarity=0.220  Sum_probs=48.7

Q ss_pred             cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC---CCCCHHHHHhc
Q 017490          174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFASK  249 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~~  249 (370)
                      .+.|++|++||- +++.++++..+..+|++|.+..|..-.. .....  .        .+.....+   ...++++.++.
T Consensus       150 ~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~-~~~~~--~--------~~~~~~~g~i~~~~d~~~av~~  218 (311)
T PRK14804        150 PLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKE-NIHAQ--T--------VERAKKKGTLSWEMNLHKAVSH  218 (311)
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccH-HHHHH--H--------HHHHHhcCCeEEEeCHHHHhCC
Confidence            478999999997 7899999999999999999987643110 00000  0        00011111   13689999999


Q ss_pred             CCEEEEe
Q 017490          250 ADVVVCC  256 (370)
Q Consensus       250 aDiV~l~  256 (370)
                      +|+|..-
T Consensus       219 aDvvy~d  225 (311)
T PRK14804        219 ADYVYTD  225 (311)
T ss_pred             CCEEEee
Confidence            9999884

>PLN02602 lactate dehydrogenase

Probab=91.88  E-value=0.27  Score=48.88  Aligned_cols=101  Identities=12%  Similarity=0.213  Sum_probs=58.2

Q ss_pred             ceEEEEecCchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCCEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVV  253 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV  253 (370)
                      ++|+|||.|.||..+|..+...|.  ++..+|...+..... .  .++....    .......  ...+. +.+++||+|
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~-a--~DL~~~~----~~~~~~~i~~~~dy-~~~~daDiV  109 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGE-M--LDLQHAA----AFLPRTKILASTDY-AVTAGSDLC  109 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHH-H--HHHHhhh----hcCCCCEEEeCCCH-HHhCCCCEE
Confidence            699999999999999998875555  799999865432110 0  0110000    0000000  11233 448999999


Q ss_pred             EEeccC--Ch-hhh-ccc--CH-------HHHhcCCCCcEEEEcCC
Q 017490          254 VCCLSL--NK-QTA-GIV--NK-------SFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       254 ~l~lP~--t~-~t~-~li--~~-------~~l~~mk~gailIN~sR  286 (370)
                      +++.-.  .+ ++| .++  |.       +.+....|.+++|+++.
T Consensus       110 VitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtN  155 (350)
T PLN02602        110 IVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSN  155 (350)
T ss_pred             EECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            998442  11 223 222  11       23444578899999984

>PTZ00317 NADP-dependent malic enzyme; Provisional

Probab=91.85  E-value=18  Score=38.20  Aligned_cols=206  Identities=10%  Similarity=0.088  Sum_probs=122.7

Q ss_pred             hcCCCCeEEEEeCcccCc-cchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccc
Q 017490           96 SRANQMKLIMQFGVGLEG-VDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGET  174 (370)
Q Consensus        96 ~~~~~Lk~I~~~~~G~d~-id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~  174 (370)
                      ...|+ -+|+.---|..+ +.+..--+..|.+.|.-      -..+|-.+++.+|+.+|-.                +..
T Consensus       238 ~~~P~-~~Iq~EDf~~~naf~iL~kyr~~i~~FnDD------iQGTaaV~lAgll~Alr~~----------------g~~  294 (559)
T PTZ00317        238 SRWPN-AVVQFEDFSNNHCFDLLERYQNKYRCFNDD------IQGTGAVIAAGFLNALKLS----------------GVP  294 (559)
T ss_pred             HhCCC-eEEehhhcCCccHHHHHHHhccCCCEeccc------chhHHHHHHHHHHHHHHHh----------------CCC
Confidence            34677 366665555443 33333334458888862      2457888899999998842                567


Q ss_pred             ccCceEEEEecCchhHHHHHHhcc----CCC-------EEEEEcCCCccccccccccchhhhcccccccccccc--C---
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRP----FGV-------KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK--G---  238 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~----~G~-------~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---  238 (370)
                      |...++.|.|.|..|-.+|+.+..    .|.       +++.+|+..--...-.+...++.      ..++...  .   
T Consensus       295 l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k------~~fa~~~~~~~~~  368 (559)
T PTZ00317        295 PEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHK------VPFARTDISAEDS  368 (559)
T ss_pred             hhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHH------HHHhccccccccc
Confidence            999999999999999999998763    577       79999976421100000000000      0111111  0   


Q ss_pred             CCCCHHHHHhcC--CEEEEeccCChhhhcccCHHHHhcCCC---CcEEEEcCCCcccCHHHHHHHHH--hCCc-eEEEEe
Q 017490          239 CHEDIFEFASKA--DVVVCCLSLNKQTAGIVNKSFLSSMKK---GSLLVNIARGGLLDYEAIAHYLE--CGHL-GGLGID  310 (370)
Q Consensus       239 ~~~~l~ell~~a--DiV~l~lP~t~~t~~li~~~~l~~mk~---gailIN~sRg~~vd~~aL~~aL~--~g~i-~ga~lD  310 (370)
                      ...+|.|+++..  |+++-+-    ...+.++++.++.|.+   ..++.=.|+...--|-.-.+|.+  +|+. .+.|. 
T Consensus       369 ~~~~L~e~v~~~KPtvLIG~S----~~~g~Ft~evv~~Ma~~~~rPIIFaLSNPt~~aE~tpeda~~~T~Grai~AtGs-  443 (559)
T PTZ00317        369 SLKTLEDVVRFVKPTALLGLS----GVGGVFTEEVVKTMASNVERPIIFPLSNPTSKAECTAEDAYKWTNGRAIVASGS-  443 (559)
T ss_pred             cCCCHHHHHhccCCCEEEEec----CCCCCCCHHHHHHHHhcCCCCEEEECCCCCCCCCcCHHHHHhhccCCEEEEECC-
Confidence            135899999988  9887641    2347899999999974   89999999876433333333443  3443 32222 


Q ss_pred             cCCCCCCCCCCc---ccCCCceEEccCCCC
Q 017490          311 VAWTEPFDPNDP---ILKFKNVLITPHVGG  337 (370)
Q Consensus       311 V~~~EPl~~~~p---L~~~~nvilTPHia~  337 (370)
                      =|  +|..-+..   -=...|+++-|=++-
T Consensus       444 pf--~pv~~~G~~~~p~Q~NN~~iFPGigl  471 (559)
T PTZ00317        444 PF--PPVTLNGKTIQPSQGNNLYVFPGVGL  471 (559)
T ss_pred             CC--CCcccCCeeeccCcCcceeeccchhh
Confidence            11  11111111   124577888886543

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=91.83  E-value=0.43  Score=46.91  Aligned_cols=37  Identities=24%  Similarity=0.302  Sum_probs=32.4

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCE-EEEEcCCCcc
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWAS  212 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~-V~~~dr~~~~  212 (370)
                      .|++|.|.|.|.+|...++.++..|.+ |++.+++..+
T Consensus       176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~  213 (358)
T TIGR03451       176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRK  213 (358)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHH
Confidence            488999999999999999999999995 9998876543

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=91.77  E-value=0.38  Score=46.64  Aligned_cols=37  Identities=24%  Similarity=0.366  Sum_probs=32.8

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCE-EEEEcCCCcc
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWAS  212 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~-V~~~dr~~~~  212 (370)
                      .|.+|.|+|.|.+|...++.++.+|++ |++.+++..+
T Consensus       163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~  200 (339)
T cd08239         163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPER  200 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHH
Confidence            488999999999999999999999999 9998876443

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=91.75  E-value=0.4  Score=45.96  Aligned_cols=36  Identities=36%  Similarity=0.305  Sum_probs=31.7

Q ss_pred             cCceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          176 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       176 ~g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      .|++|.|.| .|-||+.+++.|...|++|.+++|+..
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~   39 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPN   39 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCC
Confidence            368999999 699999999999999999998887643

>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]

Probab=91.65  E-value=2.4  Score=44.43  Aligned_cols=137  Identities=20%  Similarity=0.301  Sum_probs=95.0

Q ss_pred             cccccCceEEEEecCc-hhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490          172 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  250 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~-IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  250 (370)
                      +..+.|+...++|-.. +|.+++..|+.....|...-..                              ..++.+.+.++
T Consensus       157 ~v~v~Gk~aVVlGRS~IVG~Pia~LL~~~NaTVTiCHSK------------------------------T~~lae~v~~A  206 (935)
T KOG4230|consen  157 GVFVAGKNAVVLGRSKIVGSPIAALLLWANATVTICHSK------------------------------TRNLAEKVSRA  206 (935)
T ss_pred             CCccccceeEEEecccccCChHHHHHHhcCceEEEecCC------------------------------CccHHHHhccC
Confidence            4568999999999865 5999999999988999886321                              24688889999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceE
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL  330 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi  330 (370)
                      |+|+.++--.    +++-.++   +|||+++|+++--.+-|..-     ++|.  -..-||...+--.        ---.
T Consensus       207 DIvIvAiG~P----efVKgdW---iKpGavVIDvGINyvpD~~K-----ksg~--klvGDVdfe~Ake--------vas~  264 (935)
T KOG4230|consen  207 DIVIVAIGQP----EFVKGDW---IKPGAVVIDVGINYVPDPSK-----KSGF--KLVGDVDFESAKE--------VASF  264 (935)
T ss_pred             CEEEEEcCCc----ceeeccc---ccCCcEEEEccccccCCCCC-----cccc--eEeeecchHhhhh--------hhhc
Confidence            9999998643    2344443   69999999998766544311     1221  1355664443210        1125


Q ss_pred             EccCCCCccHHHHHHHHHHHHHHHHHHHcC
Q 017490          331 ITPHVGGVTEHSYRSMAKVVGDVALQLHAG  360 (370)
Q Consensus       331 lTPHia~~t~~~~~~~~~~~~~ni~~~~~g  360 (370)
                      +||-=||.-+....-+.+.+++..+|+..+
T Consensus       265 ITPVPGGVGPMTVAMLmqNtveaAKR~r~e  294 (935)
T KOG4230|consen  265 ITPVPGGVGPMTVAMLMQNTVEAAKRQREE  294 (935)
T ss_pred             cccCCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence            799888888877777778888887777643

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=91.65  E-value=0.38  Score=47.99  Aligned_cols=35  Identities=29%  Similarity=0.445  Sum_probs=31.9

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCC
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      .|.+|.|.|.|.+|...++.++.+|.+|++.+++.
T Consensus       178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~  212 (375)
T PLN02178        178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSS  212 (375)
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCCh
Confidence            58899999999999999999999999999987653

>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed

Probab=91.65  E-value=2.4  Score=41.90  Aligned_cols=73  Identities=15%  Similarity=0.017  Sum_probs=45.5

Q ss_pred             c-cCceEEEEecC-------chhHHHHHHhccCCCEEEEEcC-CCccccccccccchhhhccccccccccccC----CCC
Q 017490          175 L-LGKTVFILGFG-------NIGVELAKRLRPFGVKIIATKR-SWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHE  241 (370)
Q Consensus       175 l-~g~tvGIiGlG-------~IG~~vA~~l~~~G~~V~~~dr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  241 (370)
                      + .|++|+|+|.|       ++.++++..+..+|++|.+..| ..-....  .    +.   +.+.+.....+    ...
T Consensus       166 ~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~--~----~~---~~~~~~~~~~g~~~~~~~  236 (335)
T PRK04523        166 TLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDE--R----YM---DWAEQNAAESGGSLTVSH  236 (335)
T ss_pred             ccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCH--H----HH---HHHHHHHHHcCCeEEEEc
Confidence            6 79999887654       6788888888999999999876 3211000  0    00   00000011111    246


Q ss_pred             CHHHHHhcCCEEEEe
Q 017490          242 DIFEFASKADVVVCC  256 (370)
Q Consensus       242 ~l~ell~~aDiV~l~  256 (370)
                      ++++.++.+|+|..-
T Consensus       237 d~~ea~~~aDvvy~~  251 (335)
T PRK04523        237 DIDSAYAGADVVYAK  251 (335)
T ss_pred             CHHHHhCCCCEEEec
Confidence            899999999999874

>PLN02740 Alcohol dehydrogenase-like

Probab=91.64  E-value=0.47  Score=47.16  Aligned_cols=38  Identities=32%  Similarity=0.496  Sum_probs=33.2

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCcc
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  212 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~  212 (370)
                      -.|.+|.|+|.|.||...++.++.+|. +|++.+++..+
T Consensus       197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r  235 (381)
T PLN02740        197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEK  235 (381)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHH
Confidence            358899999999999999999999999 69999876543

>PRK12828 short chain dehydrogenase; Provisional

Probab=91.58  E-value=0.24  Score=44.96  Aligned_cols=39  Identities=33%  Similarity=0.394  Sum_probs=34.5

Q ss_pred             cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      .++|+++.|.|. |.||+.+++.+...|++|++++|+..+
T Consensus         4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~   43 (239)
T PRK12828          4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAP   43 (239)
T ss_pred             CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHh
Confidence            477999999995 999999999999889999999987543

>PRK06182 short chain dehydrogenase; Validated

Probab=91.55  E-value=1.4  Score=41.30  Aligned_cols=36  Identities=25%  Similarity=0.356  Sum_probs=32.1

Q ss_pred             cCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          176 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       176 ~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      .++++.|.|. |.||+++|+.+...|++|++.+|+.+
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~   38 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVD   38 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4789999995 89999999999999999999988754

>PRK07856 short chain dehydrogenase; Provisional

Probab=91.53  E-value=0.28  Score=45.43  Aligned_cols=37  Identities=24%  Similarity=0.428  Sum_probs=33.5

Q ss_pred             cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCC
Q 017490          174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      .+.||++.|.|. |.||+.+|+.|...|++|+..+|+.
T Consensus         3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~   40 (252)
T PRK07856          3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRA   40 (252)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCh
Confidence            478999999996 7899999999999999999999865

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=91.46  E-value=0.38  Score=47.14  Aligned_cols=37  Identities=19%  Similarity=0.403  Sum_probs=33.1

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      .|.+|.|+|.|.||...++.++..|.+|++.+++..+
T Consensus       166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~  202 (349)
T TIGR03201       166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEK  202 (349)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHH
Confidence            4889999999999999999999999999999876543

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.42  E-value=0.22  Score=50.73  Aligned_cols=114  Identities=12%  Similarity=0.166  Sum_probs=66.0

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccc---cccccCCCCCHHHHHhcCCE
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDD---LVDEKGCHEDIFEFASKADV  252 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~ell~~aDi  252 (370)
                      ++-+++|+|+|.+|.++|+.|+..|++|.++|.........  .   +       ..   .+.-.....+ .+.+.++|+
T Consensus         5 ~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~--~---l-------~~~~~g~~~~~~~~~-~~~~~~~d~   71 (448)
T PRK03803          5 SDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLD--T---L-------AREFPDVELRCGGFD-CELLVQASE   71 (448)
T ss_pred             cCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHH--H---H-------HhhcCCcEEEeCCCC-hHHhcCCCE
Confidence            35589999999999999999999999999999754321000  0   0       00   0000000112 244567898


Q ss_pred             EEEe--ccC-Chhhh-------cccCH-HHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 017490          253 VVCC--LSL-NKQTA-------GIVNK-SFLSS-MKKGSLLVNIARGGLLDYEAIAHYLECG  302 (370)
Q Consensus       253 V~l~--lP~-t~~t~-------~li~~-~~l~~-mk~gailIN~sRg~~vd~~aL~~aL~~g  302 (370)
                      |+..  +|. +|...       .++.+ +.+.. ++...+-|--+.|..-...-+...|+..
T Consensus        72 vV~sp~i~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~  133 (448)
T PRK03803         72 IIISPGLALDTPALRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAA  133 (448)
T ss_pred             EEECCCCCCCCHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhc
Confidence            8764  332 22211       12332 23323 3434555655678888888888888753

>PRK06196 oxidoreductase; Provisional

Probab=91.41  E-value=0.27  Score=47.42  Aligned_cols=39  Identities=28%  Similarity=0.430  Sum_probs=34.5

Q ss_pred             ccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          173 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       173 ~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      ..+.|+++.|.|. |.||+++|+.|...|++|++.+|+..
T Consensus        22 ~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~   61 (315)
T PRK06196         22 HDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPD   61 (315)
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            3578999999997 89999999999999999999998754

>PLN02214 cinnamoyl-CoA reductase

Probab=91.41  E-value=0.42  Score=46.85  Aligned_cols=38  Identities=32%  Similarity=0.295  Sum_probs=33.8

Q ss_pred             cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      .+.+++|.|.|. |.||+.+++.|...|++|.+..|+..
T Consensus         7 ~~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~   45 (342)
T PLN02214          7 SPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPD   45 (342)
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCch
Confidence            467899999997 99999999999999999999988643

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=91.41  E-value=0.11  Score=47.64  Aligned_cols=85  Identities=18%  Similarity=0.238  Sum_probs=53.0

Q ss_pred             EEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccc-cccCCCCCHHHHHhcCCEEEEec
Q 017490          180 VFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV-DEKGCHEDIFEFASKADVVVCCL  257 (370)
Q Consensus       180 vGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~~aDiV~l~l  257 (370)
                      |.|+|. |.+|+.+++.|...|++|.+.-|+..+.....     +....   .+.+ ..+...+++.+.++.+|.|++++
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~-----l~~~g---~~vv~~d~~~~~~l~~al~g~d~v~~~~   72 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQ-----LQALG---AEVVEADYDDPESLVAALKGVDAVFSVT   72 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHH-----HHHTT---TEEEES-TT-HHHHHHHHTTCSEEEEES
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhh-----hhccc---ceEeecccCCHHHHHHHHcCCceEEeec
Confidence            678995 99999999999999999999988764311110     00000   0111 01112356778899999999999


Q ss_pred             cCC-----hhhhcccCHHHH
Q 017490          258 SLN-----KQTAGIVNKSFL  272 (370)
Q Consensus       258 P~t-----~~t~~li~~~~l  272 (370)
                      |..     +....++++..=
T Consensus        73 ~~~~~~~~~~~~~li~Aa~~   92 (233)
T PF05368_consen   73 PPSHPSELEQQKNLIDAAKA   92 (233)
T ss_dssp             SCSCCCHHHHHHHHHHHHHH
T ss_pred             CcchhhhhhhhhhHHHhhhc
Confidence            953     133445554443

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK04284 ornithine carbamoyltransferase; Provisional

Probab=91.41  E-value=0.54  Score=46.35  Aligned_cols=102  Identities=17%  Similarity=0.158  Sum_probs=62.1

Q ss_pred             cccCceEEEEecC--chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHH
Q 017490          174 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFA  247 (370)
Q Consensus       174 ~l~g~tvGIiGlG--~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell  247 (370)
                      .+.|++|++||-+  ++.++++..+..+|++|...-|..-..  +..    +.  . .+.+.....+    ...++++.+
T Consensus       152 ~l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~--~~~----~~--~-~~~~~~~~~g~~~~~~~d~~ea~  222 (332)
T PRK04284        152 PYKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNP--DDE----LL--N-KCKEIAAETGGKITITDDIDEGV  222 (332)
T ss_pred             CcCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccC--CHH----HH--H-HHHHHHHHcCCeEEEEcCHHHHh
Confidence            3789999999975  888999999999999999987642111  000    00  0 0000001111    246899999


Q ss_pred             hcCCEEEEeccCC--------hh-----hhcccCHHHHhcCC-CCcEEEEc
Q 017490          248 SKADVVVCCLSLN--------KQ-----TAGIVNKSFLSSMK-KGSLLVNI  284 (370)
Q Consensus       248 ~~aDiV~l~lP~t--------~~-----t~~li~~~~l~~mk-~gailIN~  284 (370)
                      +++|+|..-.=..        ++     ..+.++++.++.+| |++++.-+
T Consensus       223 ~~aDvvy~~~w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHp  273 (332)
T PRK04284        223 KGSDVIYTDVWVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHC  273 (332)
T ss_pred             CCCCEEEECCcccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECC
Confidence            9999998742100        00     12345667777775 47777665

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=91.34  E-value=0.39  Score=46.31  Aligned_cols=67  Identities=25%  Similarity=0.280  Sum_probs=42.6

Q ss_pred             ceEEEEecCchhHHHHHHhc-cCCCEEEE-EcCCCccccccccccchhhhccccccccccccC---CCCCHHHHHh--cC
Q 017490          178 KTVFILGFGNIGVELAKRLR-PFGVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFAS--KA  250 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~-~~G~~V~~-~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~--~a  250 (370)
                      .++||||.|.||+..+..+. .-++++.+ +|+++.+...                ....+.+   .+.+.+++++  +.
T Consensus         2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~l----------------a~A~~~Gi~~~~~~~e~ll~~~dI   65 (285)
T TIGR03215         2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGL----------------ARARELGVKTSAEGVDGLLANPDI   65 (285)
T ss_pred             cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHH----------------HHHHHCCCCEEECCHHHHhcCCCC
Confidence            37999999999998876655 44677654 6665443100                1112222   2356788875  57


Q ss_pred             CEEEEeccCC
Q 017490          251 DVVVCCLSLN  260 (370)
Q Consensus       251 DiV~l~lP~t  260 (370)
                      |+|+++.|..
T Consensus        66 DaV~iaTp~~   75 (285)
T TIGR03215        66 DIVFDATSAK   75 (285)
T ss_pred             CEEEECCCcH
Confidence            8899998844

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PRK06197 short chain dehydrogenase; Provisional

Probab=91.32  E-value=0.21  Score=47.93  Aligned_cols=48  Identities=19%  Similarity=0.247  Sum_probs=39.6

Q ss_pred             hcccCCCCcccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          164 QKKLGVPTGETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       164 ~~~~~~~~~~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      .+.|......++.||++.|.|. |.||+.+|+.|...|++|++.+|+..
T Consensus         3 ~~~~~~~~~~~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~   51 (306)
T PRK06197          3 MTKWTAADIPDQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLD   51 (306)
T ss_pred             CCCCCccccccCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            3456544456789999999995 99999999999999999999888643

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=91.27  E-value=0.46  Score=46.99  Aligned_cols=37  Identities=32%  Similarity=0.447  Sum_probs=32.8

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCcc
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  212 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~  212 (370)
                      .|.+|.|+|.|.||...++.++.+|. +|++.+++..+
T Consensus       185 ~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~  222 (368)
T TIGR02818       185 EGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAK  222 (368)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHH
Confidence            57899999999999999999999999 79999876543

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>PRK06153 hypothetical protein; Provisional

Probab=91.22  E-value=0.18  Score=50.43  Aligned_cols=37  Identities=22%  Similarity=0.311  Sum_probs=33.2

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCC
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  209 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~  209 (370)
                      ..|++++|+|||+|.+|..++..|...|. ++..+|..
T Consensus       172 ~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D  209 (393)
T PRK06153        172 AKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD  209 (393)
T ss_pred             HHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence            36889999999999999999999999888 78888864

>PRK03515 ornithine carbamoyltransferase subunit I; Provisional

Probab=91.21  E-value=0.57  Score=46.29  Aligned_cols=102  Identities=17%  Similarity=0.105  Sum_probs=60.9

Q ss_pred             cccCceEEEEecC--chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHH
Q 017490          174 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFA  247 (370)
Q Consensus       174 ~l~g~tvGIiGlG--~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell  247 (370)
                      .+.|++|++||-+  ++.++++..+..+|++|.+.-|..-..  +.+    +.   +.+.+.....+    ...++++.+
T Consensus       153 ~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~--~~~----~~---~~~~~~~~~~g~~i~~~~d~~ea~  223 (336)
T PRK03515        153 AFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWP--EAA----LV---TECRALAQKNGGNITLTEDIAEGV  223 (336)
T ss_pred             CcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcC--cHH----HH---HHHHHHHHHcCCeEEEEcCHHHHh
Confidence            4789999999975  689999999999999999987643211  000    00   00000111111    246899999


Q ss_pred             hcCCEEEEeccCC-------------hhhhcccCHHHHhcC-CCCcEEEEc
Q 017490          248 SKADVVVCCLSLN-------------KQTAGIVNKSFLSSM-KKGSLLVNI  284 (370)
Q Consensus       248 ~~aDiV~l~lP~t-------------~~t~~li~~~~l~~m-k~gailIN~  284 (370)
                      +++|+|..-.=..             .-...-++++.++.. |++++|.-+
T Consensus       224 ~~aDvvytd~W~sm~~~~~~~~er~~~~~~y~v~~~lm~~a~k~~~ivmHc  274 (336)
T PRK03515        224 KGADFIYTDVWVSMGEPKEVWAERIALLRPYQVNSKMMQLTGNPQVKFLHC  274 (336)
T ss_pred             CCCCEEEecCcccCcchhHHHHHHHHhccCCccCHHHHhcccCCCCEEECC
Confidence            9999998742100             001234456666653 566666555

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.21  E-value=0.28  Score=49.87  Aligned_cols=37  Identities=24%  Similarity=0.312  Sum_probs=33.5

Q ss_pred             cccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCC
Q 017490          174 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      ++.++++.|+|+|..|.+.++.|+..|.+|.++|...
T Consensus         3 ~~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~   39 (438)
T PRK03806          3 DYQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRI   39 (438)
T ss_pred             ccCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            3568899999999999999999999999999999754

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=91.20  E-value=0.5  Score=46.43  Aligned_cols=97  Identities=18%  Similarity=0.123  Sum_probs=57.3

Q ss_pred             eEEEEec-CchhHHHHHHhccCC-------CEEEEEcCCCccccccccccchhhhccccccccccc-------cCCCCCH
Q 017490          179 TVFILGF-GNIGVELAKRLRPFG-------VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE-------KGCHEDI  243 (370)
Q Consensus       179 tvGIiGl-G~IG~~vA~~l~~~G-------~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l  243 (370)
                      +|+|+|. |.+|+.++..|...|       .+|..+|+....... ...          ..++.+.       .....++
T Consensus         4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~-~g~----------~~Dl~d~~~~~~~~~~~~~~~   72 (325)
T cd01336           4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKAL-EGV----------VMELQDCAFPLLKSVVATTDP   72 (325)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccc-cce----------eeehhhccccccCCceecCCH
Confidence            6999999 999999999987633       489999985432100 000          0111110       0013567


Q ss_pred             HHHHhcCCEEEEeccCC--h-hhh-ccc--CHH-------HHhcC-CCCcEEEEcCC
Q 017490          244 FEFASKADVVVCCLSLN--K-QTA-GIV--NKS-------FLSSM-KKGSLLVNIAR  286 (370)
Q Consensus       244 ~ell~~aDiV~l~lP~t--~-~t~-~li--~~~-------~l~~m-k~gailIN~sR  286 (370)
                      .+.++.||+|+.+.-..  + +++ .++  |.+       .+... +|++++|.++.
T Consensus        73 ~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN  129 (325)
T cd01336          73 EEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN  129 (325)
T ss_pred             HHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence            78899999998874432  1 121 111  222       23344 57889998873

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=91.16  E-value=0.29  Score=45.85  Aligned_cols=95  Identities=19%  Similarity=0.235  Sum_probs=58.2

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCCE-EEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHH--HhcCC
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF--ASKAD  251 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~-V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el--l~~aD  251 (370)
                      -.|.++.|.|.|.+|..+++.+++.|.+ |++.+++..+.....        ..    ........  ..+..  -...|
T Consensus        96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~--------~~----g~~~~~~~--~~~~~~~~~~~d  161 (277)
T cd08255          96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAE--------AL----GPADPVAA--DTADEIGGRGAD  161 (277)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHH--------Hc----CCCccccc--cchhhhcCCCCC
Confidence            3578999999999999999999999999 999887543311000        00    00000000  00011  12478


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~  288 (370)
                      +++.++....    . -...+..++++..+++++-.+
T Consensus       162 ~vl~~~~~~~----~-~~~~~~~l~~~g~~~~~g~~~  193 (277)
T cd08255         162 VVIEASGSPS----A-LETALRLLRDRGRVVLVGWYG  193 (277)
T ss_pred             EEEEccCChH----H-HHHHHHHhcCCcEEEEEeccC
Confidence            8887765322    1 235677889999999887543

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=91.16  E-value=0.37  Score=47.93  Aligned_cols=35  Identities=31%  Similarity=0.345  Sum_probs=31.8

Q ss_pred             cCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCC
Q 017490          176 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       176 ~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      .+++|.|.|. |.||+.+++.|...|++|++++|..
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~   55 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK   55 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence            5689999997 9999999999999999999999753

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=91.15  E-value=0.41  Score=46.95  Aligned_cols=106  Identities=15%  Similarity=0.091  Sum_probs=61.1

Q ss_pred             ceEEEEec-CchhHHHHHHhccCCC-------EEEEEcCCCccccccccccchhhhcccccccccccc-------CCCCC
Q 017490          178 KTVFILGF-GNIGVELAKRLRPFGV-------KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-------GCHED  242 (370)
Q Consensus       178 ~tvGIiGl-G~IG~~vA~~l~~~G~-------~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~  242 (370)
                      ++|+|||. |.||..+|..+...|.       ++..+|....... ....          ..++.+..       ....+
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~-a~g~----------a~Dl~~~~~~~~~~~~i~~~   71 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKA-LEGV----------AMELEDCAFPLLAEIVITDD   71 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccc-ccee----------ehhhhhccccccCceEEecC
Confidence            48999999 9999999998876555       7999998533210 0000          01111110       01134


Q ss_pred             HHHHHhcCCEEEEeccC--Ch-hhhc-cc--CHH-------HHhcCC-CCcEEEEcCCCcccCHHHHH
Q 017490          243 IFEFASKADVVVCCLSL--NK-QTAG-IV--NKS-------FLSSMK-KGSLLVNIARGGLLDYEAIA  296 (370)
Q Consensus       243 l~ell~~aDiV~l~lP~--t~-~t~~-li--~~~-------~l~~mk-~gailIN~sRg~~vd~~aL~  296 (370)
                      ..+.+++||+|+++.-.  .+ +||- ++  |.+       .+.... |.+++|+++  ..+|.-.-+
T Consensus        72 ~~~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~  137 (322)
T cd01338          72 PNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNALI  137 (322)
T ss_pred             cHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHHHH
Confidence            56788999999998543  11 1221 11  111       233345 588999996  555554433

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=91.13  E-value=0.36  Score=50.84  Aligned_cols=45  Identities=24%  Similarity=0.290  Sum_probs=36.8

Q ss_pred             ccCCCCcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCC
Q 017490          166 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       166 ~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      .|..+......|++|.|||.|.+|...|..|+..|++|+++|+..
T Consensus       126 ~~~~~~~~~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~  170 (564)
T PRK12771        126 GWKFPAPAPDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGP  170 (564)
T ss_pred             CCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            454333334579999999999999999999999999999999653

>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2

Probab=91.08  E-value=0.32  Score=48.30  Aligned_cols=34  Identities=35%  Similarity=0.586  Sum_probs=31.1

Q ss_pred             eEEEEecCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      +|||||-|..|..+++.++.+|++|+++|+++..
T Consensus         1 kililG~g~~~~~l~~aa~~~G~~v~~~d~~~~~   34 (380)
T TIGR01142         1 RVLLLGSGELGKEVAIEAQRLGVEVIAVDRYANA   34 (380)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCC
Confidence            5899999999999999999999999999987543

This enzyme is an alternative to PurN (TIGR00639)

>cd00704 MDH Malate dehydrogenase

Probab=91.04  E-value=0.53  Score=46.22  Aligned_cols=103  Identities=17%  Similarity=0.137  Sum_probs=61.0

Q ss_pred             eEEEEec-CchhHHHHHHhccCCC-------EEEEEcCCC--ccccccccccchhhhcccccccccccc-------CCCC
Q 017490          179 TVFILGF-GNIGVELAKRLRPFGV-------KIIATKRSW--ASHSQVSCQSSALAVKNGIIDDLVDEK-------GCHE  241 (370)
Q Consensus       179 tvGIiGl-G~IG~~vA~~l~~~G~-------~V~~~dr~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~  241 (370)
                      +|+|+|. |.||..+|..|...|.       ++..+|+..  .....             ...++.+..       .-..
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g-------------~~~Dl~d~~~~~~~~~~i~~   68 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEG-------------VVMELQDCAFPLLKGVVITT   68 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccce-------------eeeehhhhcccccCCcEEec
Confidence            7999999 9999999998875443       589999865  22100             001111110       0114


Q ss_pred             CHHHHHhcCCEEEEeccC--Ch-hhhc-cc--CH-------HHHhcC-CCCcEEEEcCCCcccCHHHHH
Q 017490          242 DIFEFASKADVVVCCLSL--NK-QTAG-IV--NK-------SFLSSM-KKGSLLVNIARGGLLDYEAIA  296 (370)
Q Consensus       242 ~l~ell~~aDiV~l~lP~--t~-~t~~-li--~~-------~~l~~m-k~gailIN~sRg~~vd~~aL~  296 (370)
                      +..+.++.||+|+++.-.  .+ +||- ++  |.       ..++.. +|.+++|.++  .++|.-.-+
T Consensus        69 ~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~  135 (323)
T cd00704          69 DPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG--NPANTNALI  135 (323)
T ss_pred             ChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC--CcHHHHHHH
Confidence            567889999999887432  22 1221 11  11       134445 5888898885  556655433

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=90.99  E-value=0.95  Score=50.85  Aligned_cols=84  Identities=24%  Similarity=0.262  Sum_probs=56.4

Q ss_pred             cccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccc-------------ccc----
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIID-------------DLV----  234 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~-------------~~~----  234 (370)
                      ...-.|++|+|||-|..|.+.|..|...|+.|.+|.|+.+..--     .-|-+++-.++             +.+    
T Consensus      1780 p~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggl-----l~ygipnmkldk~vv~rrv~ll~~egi~f~t 1854 (2142)
T KOG0399|consen 1780 PAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGL-----LMYGIPNMKLDKFVVQRRVDLLEQEGIRFVT 1854 (2142)
T ss_pred             cccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCce-----eeecCCccchhHHHHHHHHHHHHhhCceEEe
Confidence            34567999999999999999999999999999999987543100     00111110000             000    


Q ss_pred             -cccCCCCCHHHHHhcCCEEEEeccCC
Q 017490          235 -DEKGCHEDIFEFASKADVVVCCLSLN  260 (370)
Q Consensus       235 -~~~~~~~~l~ell~~aDiV~l~lP~t  260 (370)
                       .+.+...+++++.++-|.|+++.-.|
T Consensus      1855 n~eigk~vs~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1855 NTEIGKHVSLDELKKENDAIVLATGST 1881 (2142)
T ss_pred             eccccccccHHHHhhccCeEEEEeCCC
Confidence             01223468999999999999986543

>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1

Probab=90.97  E-value=1.1  Score=38.42  Aligned_cols=100  Identities=16%  Similarity=0.190  Sum_probs=62.8

Q ss_pred             HHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-C-CCCHHHHHhcCCEEEEeccCChhhhcccC
Q 017490          191 ELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-C-HEDIFEFASKADVVVCCLSLNKQTAGIVN  268 (370)
Q Consensus       191 ~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~l~ell~~aDiV~l~lP~t~~t~~li~  268 (370)
                      ..+++|...|++|++=.-.....-..              ++.-...| . ..+.++++++||+|+-.=|.+        
T Consensus        18 ~~v~~L~~~G~~V~VE~gaG~~a~fs--------------D~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~--------   75 (136)
T PF05222_consen   18 EDVKKLVKLGHEVLVESGAGEGAGFS--------------DEEYEEAGAEIVSRAEEVYSDADIILKVKPPS--------   75 (136)
T ss_dssp             HHHHHHHHTTSEEEEETTTTGGGTB---------------HHHHHHTTEEEESSHHHHHTTSSEEEESS-----------
T ss_pred             HHHHHHHhCCCEEEEECCCCCcCccc--------------HHHHhhCCcEEecCchhhcccCCEEEEECCCC--------
Confidence            45677888899999843322211000              11111122 1 235568999999998765543        


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCC
Q 017490          269 KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWT  314 (370)
Q Consensus       269 ~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~  314 (370)
                      .+.++.|++|.++|-.....  ....+++.|.+.++...++|-...
T Consensus        76 ~~e~~~l~~g~~li~~~~~~--~~~~~~~~l~~~~it~~a~E~ipr  119 (136)
T PF05222_consen   76 EEELALLKPGQTLIGFLHPA--QNKELLEALAKKGITAFALELIPR  119 (136)
T ss_dssp             GGGGGGS-TTCEEEEE--GG--GHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred             HHHHhhcCCCcEEEEeeccc--cCHHHHHHHHHCCCEEEEhhhCcC
Confidence            46778899999999776554  589999999999999777776543

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....

>TIGR03316 ygeW probable carbamoyltransferase YgeW

Probab=90.91  E-value=0.66  Score=46.20  Aligned_cols=74  Identities=15%  Similarity=0.080  Sum_probs=46.1

Q ss_pred             cccCceEEEEecC--------chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CCC
Q 017490          174 TLLGKTVFILGFG--------NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHE  241 (370)
Q Consensus       174 ~l~g~tvGIiGlG--------~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  241 (370)
                      .+.|++|+|+|.|        ++.++++..+..+|++|....|..-...+.. .  +      .+.+...+.+    ...
T Consensus       167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~-~--~------~a~~~~~~~g~~~~~~~  237 (357)
T TIGR03316       167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEV-I--E------VAKKNAAENGGKFNIVN  237 (357)
T ss_pred             ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHH-H--H------HHHHHHHHcCCeEEEEc
Confidence            4789999999854        3446778888899999999876422100000 0  0      0000011111    247


Q ss_pred             CHHHHHhcCCEEEEe
Q 017490          242 DIFEFASKADVVVCC  256 (370)
Q Consensus       242 ~l~ell~~aDiV~l~  256 (370)
                      ++++.++.+|+|..-
T Consensus       238 d~~ea~~~aDvvyt~  252 (357)
T TIGR03316       238 SMDEAFKDADIVYPK  252 (357)
T ss_pred             CHHHHhCCCCEEEEC
Confidence            899999999999876

Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=90.90  E-value=0.47  Score=46.48  Aligned_cols=80  Identities=19%  Similarity=0.097  Sum_probs=51.4

Q ss_pred             cCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEE
Q 017490          176 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  254 (370)
Q Consensus       176 ~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  254 (370)
                      .+++|.|.|. |-||+.+++.|...|++|.+.=|++..... ......+.-..+.+.........+.++++.+..||.|+
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~-~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVf   83 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKK-TEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVF   83 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhh-HHHHHhcccCcccceEEeccccccchHHHHHhCCCEEE
Confidence            6789999996 999999999999999999999888765211 00000110000000011111124578999999999986


Q ss_pred             Ee
Q 017490          255 CC  256 (370)
Q Consensus       255 l~  256 (370)
                      =+
T Consensus        84 H~   85 (327)
T KOG1502|consen   84 HT   85 (327)
T ss_pred             Ee
Confidence            43

>PRK07890 short chain dehydrogenase; Provisional

Probab=90.90  E-value=0.66  Score=42.81  Aligned_cols=37  Identities=30%  Similarity=0.437  Sum_probs=33.3

Q ss_pred             ccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          175 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       175 l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      +.+|++.|.|. |.||+.+|+.|...|++|++.+|+..
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~   40 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAE   40 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            67899999995 89999999999999999999998653

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=90.86  E-value=0.29  Score=44.86  Aligned_cols=38  Identities=24%  Similarity=0.268  Sum_probs=34.3

Q ss_pred             cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      +++|+++.|+|. |.||+.+|+.+...|++|++.+++..
T Consensus         2 ~~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~   40 (253)
T PRK08217          2 DLKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQE   40 (253)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            367999999997 99999999999999999999998753

>PLN02427 UDP-apiose/xylose synthase

Probab=90.82  E-value=0.47  Score=47.17  Aligned_cols=40  Identities=25%  Similarity=0.305  Sum_probs=35.0

Q ss_pred             CcccccCceEEEEe-cCchhHHHHHHhccC-CCEEEEEcCCC
Q 017490          171 TGETLLGKTVFILG-FGNIGVELAKRLRPF-GVKIIATKRSW  210 (370)
Q Consensus       171 ~~~~l~g~tvGIiG-lG~IG~~vA~~l~~~-G~~V~~~dr~~  210 (370)
                      .|+.++.++|.|.| .|-||+.+++.|... |++|+++|++.
T Consensus         8 ~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~   49 (386)
T PLN02427          8 DGKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYN   49 (386)
T ss_pred             CCCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCc
Confidence            46778889999999 599999999999887 59999999764

>PLN02272 glyceraldehyde-3-phosphate dehydrogenase

Probab=90.80  E-value=0.24  Score=50.21  Aligned_cols=30  Identities=23%  Similarity=0.386  Sum_probs=26.5

Q ss_pred             ceEEEEecCchhHHHHHHhcc-CCCEEEEEc
Q 017490          178 KTVFILGFGNIGVELAKRLRP-FGVKIIATK  207 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~-~G~~V~~~d  207 (370)
                      .+|||.|+|+||+.++|.+.. ++++|++++
T Consensus        86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaIN  116 (421)
T PLN02272         86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVN  116 (421)
T ss_pred             eEEEEECcCHHHHHHHHHHhhcCCcEEEEec
Confidence            489999999999999999874 799988854

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=90.72  E-value=0.23  Score=48.34  Aligned_cols=103  Identities=12%  Similarity=0.234  Sum_probs=56.3

Q ss_pred             eEEEEecCchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEe
Q 017490          179 TVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  256 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  256 (370)
                      +|+|||.|.||..+|..+...|.  ++..+|......... .  .++.......  ..........-.+.++.||+|+++
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~-a--~DL~~~~~~~--~~~~~~i~~~~y~~~~~aDivvit   75 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGE-A--LDFHHATALT--YSTNTKIRAGDYDDCADADIIVIT   75 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHH-H--HHHHhhhccC--CCCCEEEEECCHHHhCCCCEEEEC
Confidence            58999999999999998865554  799999865432110 0  0111000000  000000011234778999999998


Q ss_pred             ccC--Ch-hh---hccc--CHH-------HHhcCCCCcEEEEcCC
Q 017490          257 LSL--NK-QT---AGIV--NKS-------FLSSMKKGSLLVNIAR  286 (370)
Q Consensus       257 lP~--t~-~t---~~li--~~~-------~l~~mk~gailIN~sR  286 (370)
                      .-.  .| +|   ..++  |.+       .+..-.|.+++|.++.
T Consensus        76 aG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsN  120 (307)
T cd05290          76 AGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITN  120 (307)
T ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence            543  22 23   1222  222       2334457888987754

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=90.71  E-value=0.63  Score=45.88  Aligned_cols=37  Identities=32%  Similarity=0.505  Sum_probs=33.0

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCcc
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  212 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~  212 (370)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++..+
T Consensus       187 ~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~  224 (369)
T cd08301         187 KGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSK  224 (369)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHH
Confidence            58899999999999999999999999 79999876543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>PRK08703 short chain dehydrogenase; Provisional

Probab=90.70  E-value=0.33  Score=44.52  Aligned_cols=39  Identities=28%  Similarity=0.411  Sum_probs=34.9

Q ss_pred             ccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          173 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       173 ~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      ..++|+++.|.|. |.||+.+|+.+...|++|++++|+..
T Consensus         2 ~~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~   41 (239)
T PRK08703          2 ATLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQK   41 (239)
T ss_pred             CCCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChH
Confidence            4578999999995 89999999999999999999998764

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.69  E-value=0.35  Score=49.66  Aligned_cols=113  Identities=15%  Similarity=0.135  Sum_probs=65.6

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEE
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  254 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  254 (370)
                      -.|++|+|+|+|.-|.++|+.|+. |++|+++|........ ...   +       .+.. ..+  ....+.+.++|+|+
T Consensus         4 ~~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~-~~~---~-------~~~~-~~~--~~~~~~~~~~d~vV   68 (454)
T PRK01368          4 HTKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDI-FEE---L-------YSKN-AIA--ALSDSRWQNLDKIV   68 (454)
T ss_pred             CCCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHH-HHh---h-------hcCc-eec--cCChhHhhCCCEEE
Confidence            358899999999999999999995 9999999954322100 000   0       0000 011  11234567889887


Q ss_pred             Ee--ccC-Chhh-------hcccCHH-HH-hcCCC-CcEEEEcCCCcccCHHHHHHHHHhC
Q 017490          255 CC--LSL-NKQT-------AGIVNKS-FL-SSMKK-GSLLVNIARGGLLDYEAIAHYLECG  302 (370)
Q Consensus       255 l~--lP~-t~~t-------~~li~~~-~l-~~mk~-gailIN~sRg~~vd~~aL~~aL~~g  302 (370)
                      ..  +|. +|..       ..++.+- .+ ..++. ..+=|--+.|..-...-+.+.|+..
T Consensus        69 ~SPgI~~~~p~~~~a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~  129 (454)
T PRK01368         69 LSPGIPLTHEIVKIAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSN  129 (454)
T ss_pred             ECCCCCCCCHHHHHHHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhc
Confidence            75  332 2211       1133332 22 23332 2455555678888888888888863

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=90.67  E-value=0.4  Score=48.16  Aligned_cols=40  Identities=25%  Similarity=0.357  Sum_probs=35.1

Q ss_pred             cccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          172 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       172 ~~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      +....|++|.|+|. |.||+.+++.|...|++|++++|+..
T Consensus        55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~   95 (390)
T PLN02657         55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKS   95 (390)
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechh
Confidence            45677889999996 99999999999999999999998753

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=90.66  E-value=0.57  Score=46.02  Aligned_cols=110  Identities=15%  Similarity=0.099  Sum_probs=60.2

Q ss_pred             ceEEEEec-CchhHHHHHHhccCCC-------EEEEEcCCCccc-cccccccchhhhccccccccccccCCCCCHHHHHh
Q 017490          178 KTVFILGF-GNIGVELAKRLRPFGV-------KIIATKRSWASH-SQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS  248 (370)
Q Consensus       178 ~tvGIiGl-G~IG~~vA~~l~~~G~-------~V~~~dr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  248 (370)
                      .+|+|||. |.+|..+|..+...|.       ++..+|...... .....  .++.  +... ..........+..+.++
T Consensus         4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a--~Dl~--~~~~-~~~~~~~i~~~~~~~~~   78 (323)
T TIGR01759         4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVA--MELE--DCAF-PLLAGVVATTDPEEAFK   78 (323)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHH--HHHh--hccc-cccCCcEEecChHHHhC
Confidence            37999998 9999999998876664       799999854210 00000  0000  0000 00000001135568889


Q ss_pred             cCCEEEEeccC--Ch-hhhc-cc--CHH-------HHhcCCC-CcEEEEcCCCcccCHHH
Q 017490          249 KADVVVCCLSL--NK-QTAG-IV--NKS-------FLSSMKK-GSLLVNIARGGLLDYEA  294 (370)
Q Consensus       249 ~aDiV~l~lP~--t~-~t~~-li--~~~-------~l~~mk~-gailIN~sRg~~vd~~a  294 (370)
                      +||+|+++.-.  .+ +||- ++  |.+       .++...| .+++|.++  .++|.-.
T Consensus        79 daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t  136 (323)
T TIGR01759        79 DVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG--NPANTNA  136 (323)
T ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence            99999998543  11 2222 22  122       2333444 89999986  5555433

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=90.62  E-value=0.49  Score=45.96  Aligned_cols=98  Identities=17%  Similarity=0.149  Sum_probs=58.2

Q ss_pred             CceEEEEecCchhHHHHHHhc-cCCCEEE-EEcCCCccccccccccchhhhccccccccccccC---CCCCHHHHHh---
Q 017490          177 GKTVFILGFGNIGVELAKRLR-PFGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFAS---  248 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~-~~G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~---  248 (370)
                      ..++||||.|.||+..+..+. .-++++. ++|+++....                .....+.+   .+.+++++++   
T Consensus         4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~g----------------la~A~~~Gi~~~~~~ie~LL~~~~   67 (302)
T PRK08300          4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDG----------------LARARRLGVATSAEGIDGLLAMPE   67 (302)
T ss_pred             CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHH----------------HHHHHHcCCCcccCCHHHHHhCcC
Confidence            457999999999999776665 3466765 4566543210                01122223   2367888884   


Q ss_pred             --cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcC---CCcc----cCHHHH
Q 017490          249 --KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA---RGGL----LDYEAI  295 (370)
Q Consensus       249 --~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~s---Rg~~----vd~~aL  295 (370)
                        +.|+|+.+.|.....+     -.....+.|..+|+-+   +|++    |+.+++
T Consensus        68 ~~dIDiVf~AT~a~~H~e-----~a~~a~eaGk~VID~sPA~~~PlvVP~VN~~~~  118 (302)
T PRK08300         68 FDDIDIVFDATSAGAHVR-----HAAKLREAGIRAIDLTPAAIGPYCVPAVNLDEH  118 (302)
T ss_pred             CCCCCEEEECCCHHHHHH-----HHHHHHHcCCeEEECCccccCCcccCcCCHHHH
Confidence              5888999987432211     1222346688888776   4444    455544

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=90.62  E-value=0.46  Score=45.44  Aligned_cols=71  Identities=11%  Similarity=0.147  Sum_probs=45.4

Q ss_pred             ceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccc-cccCCCCCHHHHHhcCCEEEE
Q 017490          178 KTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV-DEKGCHEDIFEFASKADVVVC  255 (370)
Q Consensus       178 ~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~~aDiV~l  255 (370)
                      +++.|+|. |.||+.+++.|...|++|++++|+..........  .        .... .......+++++++.+|+|+.
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~--~--------~~~~~~D~~~~~~l~~~~~~~d~vi~   70 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGL--D--------VEIVEGDLRDPASLRKAVAGCRALFH   70 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccC--C--------ceEEEeeCCCHHHHHHHHhCCCEEEE
Confidence            36889985 9999999999999999999999875431100000  0        0000 001122356677888998877


Q ss_pred             ecc
Q 017490          256 CLS  258 (370)
Q Consensus       256 ~lP  258 (370)
                      +..
T Consensus        71 ~a~   73 (328)
T TIGR03466        71 VAA   73 (328)
T ss_pred             ece
Confidence            654

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PRK07825 short chain dehydrogenase; Provisional

Probab=90.59  E-value=0.37  Score=45.17  Aligned_cols=38  Identities=32%  Similarity=0.389  Sum_probs=33.5

Q ss_pred             cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      ++.|+++.|.|. |.||+.+|+.|...|++|++.+|+..
T Consensus         2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~   40 (273)
T PRK07825          2 DLRGKVVAITGGARGIGLATARALAALGARVAIGDLDEA   40 (273)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHH
Confidence            467899999996 89999999999999999999988643

>PRK06523 short chain dehydrogenase; Provisional

Probab=90.53  E-value=0.35  Score=44.84  Aligned_cols=39  Identities=31%  Similarity=0.435  Sum_probs=34.9

Q ss_pred             ccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          173 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       173 ~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      .+++|+++.|.|. |.||+.+|+.|...|++|++.+|+..
T Consensus         5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~   44 (260)
T PRK06523          5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRP   44 (260)
T ss_pred             cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChh
Confidence            4688999999995 89999999999999999999998653

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=90.51  E-value=0.8  Score=43.61  Aligned_cols=69  Identities=23%  Similarity=0.323  Sum_probs=42.4

Q ss_pred             ceEEEEe-cCchhHHHHHHhcc-CCCEEEE-EcCCCccccccccccchhhhccccccccc--cccC--CCCCHHHHHhcC
Q 017490          178 KTVFILG-FGNIGVELAKRLRP-FGVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLV--DEKG--CHEDIFEFASKA  250 (370)
Q Consensus       178 ~tvGIiG-lG~IG~~vA~~l~~-~G~~V~~-~dr~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~l~ell~~a  250 (370)
                      .+|+|+| +|.||+.+++.+.. -++++.+ +|+...... ..+.           .+..  ...+  .+.+++++...+
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~-~~~~-----------~~~~~~~~~gv~~~~d~~~l~~~~   69 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQ-GTDA-----------GELAGIGKVGVPVTDDLEAVETDP   69 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccc-CCCH-----------HHhcCcCcCCceeeCCHHHhcCCC
Confidence            3799999 69999999998874 6888655 664322100 0000           0000  0011  236788875578


Q ss_pred             CEEEEecc
Q 017490          251 DVVVCCLS  258 (370)
Q Consensus       251 DiV~l~lP  258 (370)
                      |+|+.+.|
T Consensus        70 DvVIdfT~   77 (266)
T TIGR00036        70 DVLIDFTT   77 (266)
T ss_pred             CEEEECCC
Confidence            99999876

>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate

Probab=90.50  E-value=0.25  Score=43.14  Aligned_cols=30  Identities=27%  Similarity=0.377  Sum_probs=25.9

Q ss_pred             eEEEEecCchhHHHHHHhc-cCCCEEEEEcC
Q 017490          179 TVFILGFGNIGVELAKRLR-PFGVKIIATKR  208 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~-~~G~~V~~~dr  208 (370)
                      +|||-|+|+||+.+++.+. .-.++|.+++.
T Consensus         2 kVgINGfGRIGR~v~r~~~~~~~~evvaInd   32 (151)
T PF00044_consen    2 KVGINGFGRIGRLVLRAALDQPDIEVVAIND   32 (151)
T ss_dssp             EEEEESTSHHHHHHHHHHHTSTTEEEEEEEE
T ss_pred             EEEEECCCcccHHHHHhhcccceEEEEEEec
Confidence            7999999999999999886 56778888764

The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=90.43  E-value=0.16  Score=48.46  Aligned_cols=43  Identities=19%  Similarity=0.307  Sum_probs=35.9

Q ss_pred             cCCCCcccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCC
Q 017490          167 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  209 (370)
Q Consensus       167 ~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~  209 (370)
                      |+......|++++|.|+|+|.+|..+|+.|...|. ++..+|..
T Consensus        20 ~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D   63 (268)
T PRK15116         20 YGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD   63 (268)
T ss_pred             hCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            44444467899999999999999999999998884 78888865

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=90.41  E-value=0.52  Score=45.77  Aligned_cols=96  Identities=26%  Similarity=0.359  Sum_probs=56.1

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEE
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  255 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  255 (370)
                      .|.++.|.|.|.+|+.+++.++++|++|++.+++.........    +    + .+...... .....++.-...|+|+.
T Consensus       169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~----~----g-~~~vi~~~-~~~~~~~~~~~~d~v~~  238 (337)
T cd05283         169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALK----L----G-ADEFIATK-DPEAMKKAAGSLDLIID  238 (337)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----c----C-CcEEecCc-chhhhhhccCCceEEEE
Confidence            5779999999999999999999999999999876433110000    0    0 00000000 00001112245677877


Q ss_pred             eccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          256 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       256 ~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                      +++...     .-.+.++.++++..+++++.
T Consensus       239 ~~g~~~-----~~~~~~~~l~~~G~~v~~g~  264 (337)
T cd05283         239 TVSASH-----DLDPYLSLLKPGGTLVLVGA  264 (337)
T ss_pred             CCCCcc-----hHHHHHHHhcCCCEEEEEec
Confidence            766421     12345667777777777764

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=90.31  E-value=0.55  Score=46.28  Aligned_cols=95  Identities=18%  Similarity=0.175  Sum_probs=58.4

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCC---CCHHHHHhcCC
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCH---EDIFEFASKAD  251 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~ell~~aD  251 (370)
                      ..|.+|.|.|.|.+|...++.++..|.+|++.+++.++.......            -.++.....   ..+.+.....|
T Consensus       179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~------------~Ga~~~i~~~~~~~~~~~~~~~D  246 (357)
T PLN02514        179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEH------------LGADDYLVSSDAAEMQEAADSLD  246 (357)
T ss_pred             CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHh------------cCCcEEecCCChHHHHHhcCCCc
Confidence            357899999999999999999999999998887654321000000            000000001   11222333568


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                      +++-+++....    + ...++.++++..++.++.
T Consensus       247 ~vid~~g~~~~----~-~~~~~~l~~~G~iv~~G~  276 (357)
T PLN02514        247 YIIDTVPVFHP----L-EPYLSLLKLDGKLILMGV  276 (357)
T ss_pred             EEEECCCchHH----H-HHHHHHhccCCEEEEECC
Confidence            88888763221    1 245677889999988874

>PTZ00245 ubiquitin activating enzyme; Provisional

Probab=90.27  E-value=0.29  Score=46.37  Aligned_cols=51  Identities=24%  Similarity=0.286  Sum_probs=40.0

Q ss_pred             HHHHHHhcccCCCCcccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCC
Q 017490          158 MRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  210 (370)
Q Consensus       158 ~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~  210 (370)
                      |.++++-  |+....+.|...+|.|+|+|.+|.++|+.|...|. ++..+|...
T Consensus         9 YsRQIrL--wG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~   60 (287)
T PTZ00245          9 YDRQIRL--WGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGL   60 (287)
T ss_pred             HhHHHHH--hCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCc
Confidence            4444433  66555567999999999999999999999998888 688888653

>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below)

Probab=90.22  E-value=0.67  Score=38.17  Aligned_cols=98  Identities=19%  Similarity=0.194  Sum_probs=67.0

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEec
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  257 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  257 (370)
                      |+|.|+|-|.|+..+++.++.+|.+++..+..++.                              ...-...||-+ .++
T Consensus         3 kkvLIanrGeia~r~~ra~r~~Gi~tv~v~s~~d~------------------------------~s~~~~~ad~~-~~~   51 (110)
T PF00289_consen    3 KKVLIANRGEIAVRIIRALRELGIETVAVNSNPDT------------------------------VSTHVDMADEA-YFE   51 (110)
T ss_dssp             SEEEESS-HHHHHHHHHHHHHTTSEEEEEEEGGGT------------------------------TGHHHHHSSEE-EEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCcceeccCchhc------------------------------ccccccccccc-eec
Confidence            58999999999999999999999998776654322                              11123456766 445


Q ss_pred             cCChhhhcccCHHHHhc--CCCCcEEEEcCCCcccCHHHHHHHHHhCCceE
Q 017490          258 SLNKQTAGIVNKSFLSS--MKKGSLLVNIARGGLLDYEAIAHYLECGHLGG  306 (370)
Q Consensus       258 P~t~~t~~li~~~~l~~--mk~gailIN~sRg~~vd~~aL~~aL~~g~i~g  306 (370)
                      |..+..+..++.+.+-.  -+.|+..+=-+-|.+-...+|.+++.+..+..
T Consensus        52 ~~~~~~~~yl~~e~I~~ia~~~g~~~i~pGyg~lse~~~fa~~~~~~gi~f  102 (110)
T PF00289_consen   52 PPGPSPESYLNIEAIIDIARKEGADAIHPGYGFLSENAEFAEACEDAGIIF  102 (110)
T ss_dssp             ESSSGGGTTTSHHHHHHHHHHTTESEEESTSSTTTTHHHHHHHHHHTT-EE
T ss_pred             CcchhhhhhccHHHHhhHhhhhcCcccccccchhHHHHHHHHHHHHCCCEE
Confidence            53444445555443221  24488888889999999999999998777653

CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=90.20  E-value=0.89  Score=44.02  Aligned_cols=36  Identities=22%  Similarity=0.357  Sum_probs=32.4

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      .|.+|.|.|.|.+|+.+++.+++.|.+|++.+++..
T Consensus       163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~  198 (333)
T cd08296         163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSD  198 (333)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChH
Confidence            578999999999999999999999999999987643

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=90.19  E-value=2.8  Score=42.19  Aligned_cols=93  Identities=17%  Similarity=0.302  Sum_probs=64.8

Q ss_pred             CcccccCceEEEEec---Cch-------hHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-C
Q 017490          171 TGETLLGKTVFILGF---GNI-------GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-C  239 (370)
Q Consensus       171 ~~~~l~g~tvGIiGl---G~I-------G~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  239 (370)
                      .++.++|.+|+++|+   |.+       ...+.+.+...|.+|.+||++....+.                 .....+ +
T Consensus       316 ~~k~~~~skIlvlGlayK~dvdD~ReSPa~~ii~~l~~~g~~v~~~DP~v~~~~~-----------------~~~~~~~~  378 (436)
T COG0677         316 AGKPLSGSKILVLGLAYKGDVDDLRESPALDIIELLEEWGGEVLVYDPYVKELPT-----------------REDGEGVT  378 (436)
T ss_pred             cCCCCcCceEEEEEeeecCCCcccccCchHHHHHHHHHhCCeEEEECCCCCcchh-----------------hhhccccc
Confidence            467899999999998   554       356788999999999999998764210                 001111 2


Q ss_pred             CCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEc
Q 017490          240 HEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNI  284 (370)
Q Consensus       240 ~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~  284 (370)
                      ...+++.++.+|+|++.+--  +-..-++.+.+..+  ..+++++
T Consensus       379 ~~~~e~al~~~D~vVi~tDH--~~fk~id~~~i~~~--~~vivDt  419 (436)
T COG0677         379 LAILEEALKDADAVVIATDH--SEFKEIDYEAIGKE--AKVIVDT  419 (436)
T ss_pred             hhhHHHHhccCCEEEEEecc--HHhhcCCHHHhccC--CcEEEEC
Confidence            46789999999999998531  11124677777655  6677776

>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional

Probab=90.16  E-value=0.93  Score=47.35  Aligned_cols=99  Identities=17%  Similarity=0.138  Sum_probs=64.7

Q ss_pred             cccCceEEEEec---CchhHHHHHHhccCC-CEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHH
Q 017490          174 TLLGKTVFILGF---GNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFE  245 (370)
Q Consensus       174 ~l~g~tvGIiGl---G~IG~~vA~~l~~~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~e  245 (370)
                      .+.|++|+++|=   |++..+++..+..+| ++|....+..-..  +..    +       .+.+.+.+    ...++++
T Consensus       171 ~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~--p~~----~-------~~~a~~~G~~v~i~~d~~e  237 (525)
T PRK13376        171 DNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAM--PEH----Y-------VEKMKKNGFEVRIFSSIEE  237 (525)
T ss_pred             CcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccC--CHH----H-------HHHHHHcCCeEEEEcCHHH
Confidence            478999999997   688999999999998 9998877532210  000    0       00011111    2368999


Q ss_pred             HHhcCCEE--EE-------eccCC-----hh--hhcccCHHHHhcCCCCcEEEEcC
Q 017490          246 FASKADVV--VC-------CLSLN-----KQ--TAGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       246 ll~~aDiV--~l-------~lP~t-----~~--t~~li~~~~l~~mk~gailIN~s  285 (370)
                      .++++|+.  ..       .++..     ..  -...++++.++.+|+++++.-+.
T Consensus       238 av~~AD~tdvw~~~RiQ~Ermg~~~~~~~~~~~~~y~vt~elm~~ak~~ai~MHcL  293 (525)
T PRK13376        238 YLSQKDVAKIWYFTRLQLERMGEDILEKEHILRKAVTFRKEFLDKLPEGVKFYHPL  293 (525)
T ss_pred             HhccCCccceEEEeccccccCCCccchhHHHHhcCcEECHHHHhccCCCCEEECCC
Confidence            99999952  23       12111     11  13456889999999999998875

>PRK06179 short chain dehydrogenase; Provisional

Probab=90.16  E-value=0.43  Score=44.61  Aligned_cols=37  Identities=27%  Similarity=0.376  Sum_probs=31.9

Q ss_pred             cCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          176 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       176 ~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      .++++.|.|. |.||+.+|+.|...|++|++.+|+...
T Consensus         3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~   40 (270)
T PRK06179          3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPAR   40 (270)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhh
Confidence            3678999995 899999999999999999999987543

>PRK12562 ornithine carbamoyltransferase subunit F; Provisional

Probab=90.13  E-value=1  Score=44.38  Aligned_cols=102  Identities=15%  Similarity=0.130  Sum_probs=62.9

Q ss_pred             cccCceEEEEecC--chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHH
Q 017490          174 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFA  247 (370)
Q Consensus       174 ~l~g~tvGIiGlG--~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell  247 (370)
                      .+.|++|++||-+  ++.++++..+..+|++|.+..|..-...  ..    +.   +...+.....+    ...++++.+
T Consensus       153 ~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~--~~----~~---~~~~~~~~~~g~~~~~~~d~~~a~  223 (334)
T PRK12562        153 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPE--AS----LV---AECSALAQKHGGKITLTEDIAAGV  223 (334)
T ss_pred             CcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCc--HH----HH---HHHHHHHHHcCCeEEEEcCHHHHh
Confidence            4789999999975  7899999999999999998876431100  00    00   00000111111    237899999


Q ss_pred             hcCCEEEEec------cCC--hh-----hhcccCHHHHhcC-CCCcEEEEc
Q 017490          248 SKADVVVCCL------SLN--KQ-----TAGIVNKSFLSSM-KKGSLLVNI  284 (370)
Q Consensus       248 ~~aDiV~l~l------P~t--~~-----t~~li~~~~l~~m-k~gailIN~  284 (370)
                      +.+|+|..-.      ...  ++     ...-++++.++.. |+++++.-+
T Consensus       224 ~~aDvvyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHc  274 (334)
T PRK12562        224 KGADFIYTDVWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHC  274 (334)
T ss_pred             CCCCEEEEcCccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECC
Confidence            9999998753      100  01     1234567777764 677777766

>cd08293 PTGR2 Prostaglandin reductase

Probab=90.08  E-value=0.59  Score=45.30  Aligned_cols=93  Identities=17%  Similarity=0.218  Sum_probs=55.8

Q ss_pred             CceEEEEec-CchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHH-----hc
Q 017490          177 GKTVFILGF-GNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA-----SK  249 (370)
Q Consensus       177 g~tvGIiGl-G~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-----~~  249 (370)
                      |.+|.|.|. |.+|...++.++.+|+ +|++.+++.++.......   +    + ++..+..  ...++.+.+     ..
T Consensus       155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~---l----G-a~~vi~~--~~~~~~~~i~~~~~~g  224 (345)
T cd08293         155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE---L----G-FDAAINY--KTDNVAERLRELCPEG  224 (345)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---c----C-CcEEEEC--CCCCHHHHHHHHCCCC
Confidence            489999998 9999999999999999 899987764331100000   0    0 0000000  112333322     24


Q ss_pred             CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcC
Q 017490          250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~s  285 (370)
                      .|+|+-++... .    + ...++.++++..+|.++
T Consensus       225 vd~vid~~g~~-~----~-~~~~~~l~~~G~iv~~G  254 (345)
T cd08293         225 VDVYFDNVGGE-I----S-DTVISQMNENSHIILCG  254 (345)
T ss_pred             ceEEEECCCcH-H----H-HHHHHHhccCCEEEEEe
Confidence            68887766521 1    2 45677888888888876

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=90.02  E-value=0.8  Score=42.77  Aligned_cols=37  Identities=22%  Similarity=0.374  Sum_probs=33.0

Q ss_pred             cccCceEEEEec---CchhHHHHHHhccCCCEEEEEcCCC
Q 017490          174 TLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       174 ~l~g~tvGIiGl---G~IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      .+.||++.|.|.   +.||+++|+.|...|++|+..+|+.
T Consensus         4 ~~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~   43 (256)
T PRK07889          4 LLEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGR   43 (256)
T ss_pred             cccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCcc
Confidence            478999999996   7999999999999999999988753

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=90.02  E-value=0.7  Score=44.55  Aligned_cols=36  Identities=36%  Similarity=0.252  Sum_probs=31.2

Q ss_pred             cCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          176 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       176 ~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      .||++.|.|. |.||+.+++.|...|++|++..|+..
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~   40 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPK   40 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCc
Confidence            3789999995 99999999999999999988776643

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=90.01  E-value=0.92  Score=44.93  Aligned_cols=31  Identities=26%  Similarity=0.299  Sum_probs=25.5

Q ss_pred             ceEEEEe-cCchhHHHHHHhccCC-CEEEEEcC
Q 017490          178 KTVFILG-FGNIGVELAKRLRPFG-VKIIATKR  208 (370)
Q Consensus       178 ~tvGIiG-lG~IG~~vA~~l~~~G-~~V~~~dr  208 (370)
                      .+|+|+| .|.+|+.+++.|..+. +++.++.+
T Consensus         4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~   36 (349)
T PRK08664          4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAA   36 (349)
T ss_pred             cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEc
Confidence            5899998 8999999999998654 48887733

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=89.99  E-value=0.65  Score=45.36  Aligned_cols=103  Identities=18%  Similarity=0.120  Sum_probs=59.9

Q ss_pred             ceEEEEec-CchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEE
Q 017490          178 KTVFILGF-GNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  254 (370)
Q Consensus       178 ~tvGIiGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  254 (370)
                      .+|+|||. |.+|..+|..+...|.  ++..+|.. ...-...+.    .  +..............++.+.++.||+|+
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~-~a~g~alDL----~--~~~~~~~i~~~~~~~~~y~~~~daDivv   73 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV-NTPGVAADL----S--HINTPAKVTGYLGPEELKKALKGADVVV   73 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC-ccceeehHh----H--hCCCcceEEEecCCCchHHhcCCCCEEE
Confidence            37999999 9999999999886664  79999987 321111111    0  0000000000001123567889999999


Q ss_pred             EeccC--Ch-hhhc-cc--CHH-------HHhcCCCCcEEEEcCCC
Q 017490          255 CCLSL--NK-QTAG-IV--NKS-------FLSSMKKGSLLVNIARG  287 (370)
Q Consensus       255 l~lP~--t~-~t~~-li--~~~-------~l~~mk~gailIN~sRg  287 (370)
                      ++.-.  .| ++|- ++  |.+       .+..-.|.+++|+++..
T Consensus        74 itaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNP  119 (310)
T cd01337          74 IPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNP  119 (310)
T ss_pred             EeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence            98543  22 2222 22  222       34445789999999765

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=89.98  E-value=0.48  Score=45.70  Aligned_cols=95  Identities=16%  Similarity=0.113  Sum_probs=57.1

Q ss_pred             cCceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHh-----c
Q 017490          176 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----K  249 (370)
Q Consensus       176 ~g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~  249 (370)
                      .|.+|.|.| .|.+|...++.++..|++|++.+++.++.......        + .+..+.. ....++.+.+.     .
T Consensus       138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~l--------G-a~~vi~~-~~~~~~~~~~~~~~~~g  207 (325)
T TIGR02825       138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKL--------G-FDVAFNY-KTVKSLEETLKKASPDG  207 (325)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc--------C-CCEEEec-cccccHHHHHHHhCCCC
Confidence            578999999 59999999999999999999887764331110000        0 0000000 00112333221     3


Q ss_pred             CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                      .|+|+-++.. +.    + ...++.++++..++..+.
T Consensus       208 vdvv~d~~G~-~~----~-~~~~~~l~~~G~iv~~G~  238 (325)
T TIGR02825       208 YDCYFDNVGG-EF----S-NTVIGQMKKFGRIAICGA  238 (325)
T ss_pred             eEEEEECCCH-HH----H-HHHHHHhCcCcEEEEecc
Confidence            6777776542 11    2 456788899999988875

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=89.96  E-value=0.28  Score=45.87  Aligned_cols=38  Identities=29%  Similarity=0.365  Sum_probs=33.2

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCC
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  210 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~  210 (370)
                      ..|++++|.|+|+|.+|..+|+.|...|. +++.+|...
T Consensus         7 ~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~   45 (231)
T cd00755           7 EKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV   45 (231)
T ss_pred             HHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            45788999999999999999999998888 788888653

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=89.96  E-value=0.56  Score=46.32  Aligned_cols=89  Identities=19%  Similarity=0.269  Sum_probs=50.7

Q ss_pred             cCceEEEEec-CchhHHHHHHhcc--CC-CEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHH-HhcC
Q 017490          176 LGKTVFILGF-GNIGVELAKRLRP--FG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF-ASKA  250 (370)
Q Consensus       176 ~g~tvGIiGl-G~IG~~vA~~l~~--~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~a  250 (370)
                      .+.+|+|||. |.+|+++.+.|..  +- .++..+.........       +.        +........++++. +.++
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~-------~~--------~~~~~~~v~~~~~~~~~~~   67 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGET-------LR--------FGGKSVTVQDAAEFDWSQA   67 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCce-------EE--------ECCcceEEEeCchhhccCC
Confidence            4668999996 9999999999987  43 355544322111000       00        00000011234443 3689


Q ss_pred             CEEEEeccCChhhhcccCHHHHhc-CCCCcEEEEcC
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSS-MKKGSLLVNIA  285 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~-mk~gailIN~s  285 (370)
                      |++++++|... .     ++.... .+.|..+||.|
T Consensus        68 Dvvf~a~p~~~-s-----~~~~~~~~~~g~~VIDlS   97 (336)
T PRK08040         68 QLAFFVAGREA-S-----AAYAEEATNAGCLVIDSS   97 (336)
T ss_pred             CEEEECCCHHH-H-----HHHHHHHHHCCCEEEECC
Confidence            99999998542 2     222222 24688888888

>PRK06057 short chain dehydrogenase; Provisional

Probab=89.94  E-value=0.39  Score=44.51  Aligned_cols=38  Identities=26%  Similarity=0.381  Sum_probs=34.3

Q ss_pred             cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      .+.|+++.|+|. |.||+.+++.+...|++|++++|+..
T Consensus         4 ~~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~   42 (255)
T PRK06057          4 RLAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPE   42 (255)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            478999999997 99999999999999999999988654

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=89.91  E-value=0.55  Score=46.19  Aligned_cols=36  Identities=19%  Similarity=0.358  Sum_probs=32.2

Q ss_pred             cCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          176 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       176 ~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      .|.+|.|.|. |.+|...++.++.+|++|++.+++..
T Consensus       158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~  194 (348)
T PLN03154        158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQ  194 (348)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHH
Confidence            5889999999 99999999999999999999876543

>PRK10537 voltage-gated potassium channel; Provisional

Probab=89.90  E-value=1.6  Score=43.98  Aligned_cols=33  Identities=15%  Similarity=0.171  Sum_probs=29.2

Q ss_pred             CceEEEEecCchhHHHHHHhccCCCEEEEEcCC
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRS  209 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~  209 (370)
                      ...+-|+|+|.+|+.+++.|++.|.+|.+.+.+
T Consensus       240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d  272 (393)
T PRK10537        240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPL  272 (393)
T ss_pred             CCeEEEECCChHHHHHHHHHHHCCCCEEEEECc
Confidence            456889999999999999999999999888864

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=89.82  E-value=0.41  Score=43.97  Aligned_cols=37  Identities=30%  Similarity=0.426  Sum_probs=33.5

Q ss_pred             cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCC
Q 017490          174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      .+.||++.|.|. |.||+.+|+.|...|++|++.+|+.
T Consensus         2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~   39 (248)
T TIGR01832         2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE   39 (248)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch
Confidence            378999999997 8999999999999999999998864

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=89.77  E-value=0.68  Score=45.46  Aligned_cols=103  Identities=17%  Similarity=0.140  Sum_probs=59.4

Q ss_pred             eEEEEec-CchhHHHHHHhccCCC-------EEEEEcCCCccccccccccchhhhcccccccccccc------C-CCCCH
Q 017490          179 TVFILGF-GNIGVELAKRLRPFGV-------KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK------G-CHEDI  243 (370)
Q Consensus       179 tvGIiGl-G~IG~~vA~~l~~~G~-------~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~l  243 (370)
                      +|+|+|. |.+|..+|..|...|.       ++..+|+....... ..          ...++.+..      . ...+.
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a-~g----------~~~Dl~d~~~~~~~~~~~~~~~   69 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVL-EG----------VVMELMDCAFPLLDGVVPTHDP   69 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCccccc-ce----------eEeehhcccchhcCceeccCCh
Confidence            5899999 9999999998876444       58999985432100 00          001111111      0 11255


Q ss_pred             HHHHhcCCEEEEeccC--Ch-hhh-ccc--CH-------HHHhcC-CCCcEEEEcCCCcccCHHH
Q 017490          244 FEFASKADVVVCCLSL--NK-QTA-GIV--NK-------SFLSSM-KKGSLLVNIARGGLLDYEA  294 (370)
Q Consensus       244 ~ell~~aDiV~l~lP~--t~-~t~-~li--~~-------~~l~~m-k~gailIN~sRg~~vd~~a  294 (370)
                      .+.+++||+|+++.-.  .+ +|+ .++  |.       ..++.. +|.+++|.++  .++|.-.
T Consensus        70 ~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs--NPvDv~t  132 (324)
T TIGR01758        70 AVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG--NPANTNA  132 (324)
T ss_pred             HHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence            6889999999987543  21 121 122  11       134445 5888999887  5555544

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>PRK06841 short chain dehydrogenase; Provisional

Probab=89.74  E-value=0.42  Score=44.11  Aligned_cols=38  Identities=26%  Similarity=0.344  Sum_probs=34.3

Q ss_pred             cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      .+.|+++.|.|. |.||+.+|+.|...|++|++.+|+..
T Consensus        12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~   50 (255)
T PRK06841         12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSED   50 (255)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            578999999995 99999999999999999999998653

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=89.70  E-value=0.35  Score=48.98  Aligned_cols=116  Identities=17%  Similarity=0.193  Sum_probs=67.3

Q ss_pred             eEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEe--
Q 017490          179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC--  256 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~--  256 (370)
                      ++.|+|+|.+|.++|+.|+..|++|.++|............  .+..     ...+.-... .+ .+.+..+|+|+..  
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~--~~~~-----~~gi~~~~g-~~-~~~~~~~d~vv~sp~   71 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMG--QLRL-----NEGSVLHTG-LH-LEDLNNADLVVKSPG   71 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHH--HHhh-----ccCcEEEec-Cc-hHHhccCCEEEECCC
Confidence            37899999999999999999999999999764431110000  0000     000000001 22 3456789988765  


Q ss_pred             ccC-Chhhh-------cccCH-HHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 017490          257 LSL-NKQTA-------GIVNK-SFLSS-MKKGSLLVNIARGGLLDYEAIAHYLECGH  303 (370)
Q Consensus       257 lP~-t~~t~-------~li~~-~~l~~-mk~gailIN~sRg~~vd~~aL~~aL~~g~  303 (370)
                      +|. +|+..       .++.+ +.+.. ++.-.+-|.-+.|..-...-+...|+...
T Consensus        72 i~~~~p~~~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g  128 (433)
T TIGR01087        72 IPPDHPLVQAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAG  128 (433)
T ss_pred             CCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence            332 23221       12332 23322 34446666667899888888888888654

>PRK06398 aldose dehydrogenase; Validated

Probab=89.58  E-value=0.47  Score=44.31  Aligned_cols=38  Identities=24%  Similarity=0.279  Sum_probs=34.1

Q ss_pred             cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      +++||++.|.|. |.||+++|+.|...|++|+..+|+..
T Consensus         3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~   41 (258)
T PRK06398          3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEP   41 (258)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcc
Confidence            578999999995 79999999999999999999988654

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=89.54  E-value=0.43  Score=43.49  Aligned_cols=38  Identities=26%  Similarity=0.318  Sum_probs=34.1

Q ss_pred             cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      +++|+++.|.|. |.||+.+++.+...|++|++.+|+..
T Consensus         2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~   40 (238)
T PRK05786          2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNEN   40 (238)
T ss_pred             CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            477999999997 78999999999999999999998754

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=89.52  E-value=0.51  Score=45.36  Aligned_cols=97  Identities=24%  Similarity=0.334  Sum_probs=57.8

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEE
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  254 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  254 (370)
                      -.|.+|.|+|.|.+|+.+++.++.+|++|++.+++.........        .+ ........ ........-...|+++
T Consensus       161 ~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~--------~g-~~~~~~~~-~~~~~~~~~~~~d~vi  230 (330)
T cd08245         161 RPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARK--------LG-ADEVVDSG-AELDEQAAAGGADVIL  230 (330)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--------hC-CcEEeccC-CcchHHhccCCCCEEE
Confidence            34678999999999999999999999999998876543110000        00 00000000 0001111113578888


Q ss_pred             EeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          255 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       255 l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                      -++....     ...+.+..|+++..+|+++.
T Consensus       231 ~~~~~~~-----~~~~~~~~l~~~G~~i~~~~  257 (330)
T cd08245         231 VTVVSGA-----AAEAALGGLRRGGRIVLVGL  257 (330)
T ss_pred             ECCCcHH-----HHHHHHHhcccCCEEEEECC
Confidence            7754321     12456778999989998864

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>PRK07774 short chain dehydrogenase; Provisional

Probab=89.50  E-value=0.46  Score=43.68  Aligned_cols=38  Identities=21%  Similarity=0.309  Sum_probs=34.1

Q ss_pred             cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      .+.|+++.|.|. |.||+.+++.+...|++|++.+|+..
T Consensus         3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~   41 (250)
T PRK07774          3 RFDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAE   41 (250)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            467899999997 99999999999999999999998753

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=89.47  E-value=0.45  Score=43.51  Aligned_cols=39  Identities=26%  Similarity=0.373  Sum_probs=34.4

Q ss_pred             ccccCceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          173 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       173 ~~l~g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      +.+.++++.|.| .|.+|+.+++.|...|++|++.+|+..
T Consensus         2 ~~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~   41 (251)
T PRK12826          2 RDLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGD   41 (251)
T ss_pred             CCCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            346789999999 699999999999999999999998743

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=89.29  E-value=0.14  Score=42.07  Aligned_cols=102  Identities=24%  Similarity=0.384  Sum_probs=57.1

Q ss_pred             ecCchhHHHHHHhccC----CCEEEE-EcCCCccccccccccchhhhccccccccccccCCCCCHHHHHh--cCCEEEEe
Q 017490          184 GFGNIGVELAKRLRPF----GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADVVVCC  256 (370)
Q Consensus       184 GlG~IG~~vA~~l~~~----G~~V~~-~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l~  256 (370)
                      |+|.||+.+++.+...    +++|.+ ++++ .......             ...........++++++.  ..|+|+=|
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~dvvVE~   66 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKDW-------------AASFPDEAFTTDLEELIDDPDIDVVVEC   66 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETTH-------------HHHHTHSCEESSHHHHHTHTT-SEEEE-
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhhh-------------hhhcccccccCCHHHHhcCcCCCEEEEC
Confidence            8999999999999764    677654 5555 1100000             001111113468899988  89999998


Q ss_pred             ccCChhhhcccCHHHHhcCCCCcEEEEcCCCccc---CHHHHHHHHHhCCc
Q 017490          257 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLL---DYEAIAHYLECGHL  304 (370)
Q Consensus       257 lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~v---d~~aL~~aL~~g~i  304 (370)
                      .+..+..     .-..+.|+.|.-+|-.+-+.+.   ..+.|.++.+++..
T Consensus        67 t~~~~~~-----~~~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~  112 (117)
T PF03447_consen   67 TSSEAVA-----EYYEKALERGKHVVTANKGALADEALYEELREAARKNGV  112 (117)
T ss_dssp             SSCHHHH-----HHHHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-
T ss_pred             CCchHHH-----HHHHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCC
Confidence            5543322     2234446788889988888877   33445555555443

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>PRK07576 short chain dehydrogenase; Provisional

Probab=89.28  E-value=0.47  Score=44.45  Aligned_cols=39  Identities=23%  Similarity=0.363  Sum_probs=35.1

Q ss_pred             ccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          173 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       173 ~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      .++.++++.|.|. |.||+.+++.+...|++|++.+|+..
T Consensus         5 ~~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~   44 (264)
T PRK07576          5 FDFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQE   44 (264)
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4688999999997 89999999999999999999998754

>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated

Probab=89.26  E-value=1  Score=45.43  Aligned_cols=74  Identities=15%  Similarity=0.124  Sum_probs=47.5

Q ss_pred             cccCceEEEEec-----C---chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CCC
Q 017490          174 TLLGKTVFILGF-----G---NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHE  241 (370)
Q Consensus       174 ~l~g~tvGIiGl-----G---~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  241 (370)
                      .+.|++|+|+|-     |   ++.++++..+..+|++|.+..+..-...+.. .  ++      +.+...+.+    ...
T Consensus       184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i-~--~~------a~~~~~~~G~~i~~~~  254 (395)
T PRK07200        184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEV-V--EV------AKKNAKASGGSFRQVN  254 (395)
T ss_pred             ccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHH-H--HH------HHHHHHHcCCeEEEEc
Confidence            478999999985     5   4568889988999999999876421100000 0  00      000011111    247


Q ss_pred             CHHHHHhcCCEEEEe
Q 017490          242 DIFEFASKADVVVCC  256 (370)
Q Consensus       242 ~l~ell~~aDiV~l~  256 (370)
                      ++++.++.+|+|..-
T Consensus       255 d~~eav~~aDvVYtd  269 (395)
T PRK07200        255 SMEEAFKDADIVYPK  269 (395)
T ss_pred             CHHHHhCCCCEEEEc
Confidence            899999999999875

>PRK06139 short chain dehydrogenase; Provisional

Probab=89.14  E-value=0.81  Score=44.85  Aligned_cols=39  Identities=26%  Similarity=0.362  Sum_probs=34.8

Q ss_pred             ccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          173 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       173 ~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      ..+.++++.|.|. |.||+++|+.+...|++|+..+|+..
T Consensus         3 ~~l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~   42 (330)
T PRK06139          3 GPLHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEE   42 (330)
T ss_pred             cCCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4578999999997 89999999999999999999988643

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=89.14  E-value=0.24  Score=47.85  Aligned_cols=44  Identities=34%  Similarity=0.455  Sum_probs=36.9

Q ss_pred             cCCCCcccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCC
Q 017490          167 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  210 (370)
Q Consensus       167 ~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~  210 (370)
                      |+....+.|..++|.|+|+|.+|.++|+.|...|. +|..+|...
T Consensus         9 ~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~   53 (286)
T cd01491           9 LGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP   53 (286)
T ss_pred             cCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence            44444567899999999999999999999998888 588998754

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PLN02827 Alcohol dehydrogenase-like

Probab=89.08  E-value=0.98  Score=44.95  Aligned_cols=37  Identities=27%  Similarity=0.460  Sum_probs=31.8

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCCE-EEEEcCCCc
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWA  211 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~-V~~~dr~~~  211 (370)
                      -.|.+|.|+|.|.+|..+++.++.+|++ |++.+++..
T Consensus       192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~  229 (378)
T PLN02827        192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPE  229 (378)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHH
Confidence            3588999999999999999999999994 888876543

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=89.06  E-value=0.36  Score=51.34  Aligned_cols=61  Identities=28%  Similarity=0.377  Sum_probs=44.4

Q ss_pred             CchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCC---CcccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCC
Q 017490          136 NAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP---TGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  209 (370)
Q Consensus       136 na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~---~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~  209 (370)
                      +....||-++-+=|-+.             +|...   ....|++.+|.|+|+|.+|..+|+.|.+.|. +++.+|..
T Consensus       307 dP~~la~~avdlnlkLm-------------kWRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D  371 (664)
T TIGR01381       307 DPKRLAERSVDLNLKLM-------------KWRLHPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNG  371 (664)
T ss_pred             CHHHHHHHHHHHHHHHH-------------hhhcCChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence            34556666665544444             34322   2357899999999999999999999999998 67777753

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=89.05  E-value=1.1  Score=44.43  Aligned_cols=88  Identities=13%  Similarity=0.203  Sum_probs=49.5

Q ss_pred             CceEEEEec-CchhHHHHHHhc-cCCCE---EEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcC
Q 017490          177 GKTVFILGF-GNIGVELAKRLR-PFGVK---IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKA  250 (370)
Q Consensus       177 g~tvGIiGl-G~IG~~vA~~l~-~~G~~---V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~a  250 (370)
                      +.+|||||. |.+|+++.+.|. .-.+.   +..+.........       +.+..       .... ...+.++ +.++
T Consensus         5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~-------~~~~~-------~~l~v~~~~~~~-~~~~   69 (347)
T PRK06728          5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKT-------VQFKG-------REIIIQEAKINS-FEGV   69 (347)
T ss_pred             CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCC-------eeeCC-------cceEEEeCCHHH-hcCC
Confidence            468999996 999999999998 46666   4333322111000       00000       0000 1123333 4789


Q ss_pred             CEEEEeccCChhhhcccCHHHHhc-CCCCcEEEEcC
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSS-MKKGSLLVNIA  285 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~-mk~gailIN~s  285 (370)
                      |+++.++|.. ..+.+     ... .+.|+.+|+.|
T Consensus        70 Divf~a~~~~-~s~~~-----~~~~~~~G~~VID~S   99 (347)
T PRK06728         70 DIAFFSAGGE-VSRQF-----VNQAVSSGAIVIDNT   99 (347)
T ss_pred             CEEEECCChH-HHHHH-----HHHHHHCCCEEEECc
Confidence            9999999854 22222     222 25678888887

>PRK05717 oxidoreductase; Validated

Probab=89.04  E-value=0.54  Score=43.56  Aligned_cols=39  Identities=18%  Similarity=0.271  Sum_probs=34.7

Q ss_pred             ccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          173 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       173 ~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      ..+.||++.|.|. |.||+.+|+.|...|++|+..+++..
T Consensus         6 ~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~   45 (255)
T PRK05717          6 PGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRE   45 (255)
T ss_pred             cccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHH
Confidence            4678999999995 99999999999999999999987643

>PRK06172 short chain dehydrogenase; Provisional

Probab=89.02  E-value=0.44  Score=44.03  Aligned_cols=38  Identities=29%  Similarity=0.381  Sum_probs=34.3

Q ss_pred             cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      .+.||++.|.|. |.||+.+|+.|...|++|++.+|+.+
T Consensus         4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~   42 (253)
T PRK06172          4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAA   42 (253)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            478999999996 89999999999999999999998754

>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]

Probab=89.02  E-value=0.65  Score=45.00  Aligned_cols=70  Identities=20%  Similarity=0.243  Sum_probs=48.4

Q ss_pred             ccCceEEEEe---cCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccc--cC-CCCCHHHHHh
Q 017490          175 LLGKTVFILG---FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE--KG-CHEDIFEFAS  248 (370)
Q Consensus       175 l~g~tvGIiG---lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~l~ell~  248 (370)
                      +.|++|+|+|   +|+..++.++.|+.||.+|..+.|..-..  +          .....++...  .. .....++.++
T Consensus       156 ~~gl~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L~~--p----------~~i~~~l~~~~~~~~~~~~~e~~i~  223 (316)
T COG0540         156 LDGLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETLLP--P----------EYILEELEEKGGVVVEHDSDEEVIE  223 (316)
T ss_pred             cCCcEEEEEccccchHHHHHHHHHHHHcCCEEEEECchHhCC--c----------hhHHHHHhhcCceEEEecchhhhhc
Confidence            8899999999   89999999999999999999987643221  0          0011111111  11 2345666999


Q ss_pred             cCCEEEEe
Q 017490          249 KADVVVCC  256 (370)
Q Consensus       249 ~aDiV~l~  256 (370)
                      ++||+.+.
T Consensus       224 ~~DVl~~l  231 (316)
T COG0540         224 EADVLYML  231 (316)
T ss_pred             cCCEEEee
Confidence            99998653

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=88.96  E-value=0.44  Score=47.09  Aligned_cols=88  Identities=16%  Similarity=0.188  Sum_probs=48.1

Q ss_pred             eEEEEe-cCchhHHHHHHhccCCCEE---EEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEE
Q 017490          179 TVFILG-FGNIGVELAKRLRPFGVKI---IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  254 (370)
Q Consensus       179 tvGIiG-lG~IG~~vA~~l~~~G~~V---~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  254 (370)
                      +|+|+| .|.+|+++++.|...|+.+   .++.+.......       +..      ....-.....+. +.+..+|+|+
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~-------~~~------~~~~~~~~~~~~-~~~~~~D~v~   66 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRK-------VTF------KGKELEVNEAKI-ESFEGIDIAL   66 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCe-------eee------CCeeEEEEeCCh-HHhcCCCEEE
Confidence            589999 6999999999998866653   333332221100       000      000000001122 3357899999


Q ss_pred             EeccCChhhhcccCHHHHhcCCCCcEEEEcC
Q 017490          255 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       255 l~lP~t~~t~~li~~~~l~~mk~gailIN~s  285 (370)
                      .|+|... +..+. ...   .+.|+++|+.|
T Consensus        67 ~a~g~~~-s~~~a-~~~---~~~G~~VID~s   92 (339)
T TIGR01296        67 FSAGGSV-SKEFA-PKA---AKCGAIVIDNT   92 (339)
T ss_pred             ECCCHHH-HHHHH-HHH---HHCCCEEEECC
Confidence            9998542 22221 111   34678888777

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=88.91  E-value=1.3  Score=43.16  Aligned_cols=95  Identities=25%  Similarity=0.376  Sum_probs=58.8

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCH----HHHHh--
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDI----FEFAS--  248 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~ell~--  248 (370)
                      .|.+|.|.|.|.+|+..++.++..|+ +|++.+++..+......    +    + ++..+..  ...++    .+...  
T Consensus       172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~----~----g-a~~~i~~--~~~~~~~~l~~~~~~~  240 (351)
T cd08233         172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEE----L----G-ATIVLDP--TEVDVVAEVRKLTGGG  240 (351)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----h----C-CCEEECC--CccCHHHHHHHHhCCC
Confidence            57899999999999999999999999 89988875443110000    0    0 0001110  01122    22332  


Q ss_pred             cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          249 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       249 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                      ..|+|+-+......    + ...++.++++..++.++.
T Consensus       241 ~~d~vid~~g~~~~----~-~~~~~~l~~~G~~v~~g~  273 (351)
T cd08233         241 GVDVSFDCAGVQAT----L-DTAIDALRPRGTAVNVAI  273 (351)
T ss_pred             CCCEEEECCCCHHH----H-HHHHHhccCCCEEEEEcc
Confidence            38999888653221    1 356777899999998875

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>PRK07831 short chain dehydrogenase; Provisional

Probab=88.91  E-value=0.44  Score=44.39  Aligned_cols=38  Identities=26%  Similarity=0.381  Sum_probs=33.4

Q ss_pred             cccCceEEEEec-C-chhHHHHHHhccCCCEEEEEcCCCc
Q 017490          174 TLLGKTVFILGF-G-NIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       174 ~l~g~tvGIiGl-G-~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      .+.|+++.|.|. | .||+.+|+.+...|++|++.+++..
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~   53 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHER   53 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            467899999997 6 6999999999999999999987654

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=88.82  E-value=1.3  Score=45.42  Aligned_cols=110  Identities=16%  Similarity=0.148  Sum_probs=65.9

Q ss_pred             ceEEEEec-CchhHHHHHHhccC-------CC--EEEEEcCCCccccccccccchhhhcccccccccccc------CC-C
Q 017490          178 KTVFILGF-GNIGVELAKRLRPF-------GV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK------GC-H  240 (370)
Q Consensus       178 ~tvGIiGl-G~IG~~vA~~l~~~-------G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~  240 (370)
                      .+|+|||. |.+|..+|-.+...       |.  +++.+|++.+...-..             .++.+..      .. .
T Consensus       101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~a-------------mDL~daa~~~~~~v~i~  167 (444)
T PLN00112        101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVA-------------MELEDSLYPLLREVSIG  167 (444)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHH-------------HHHHHhhhhhcCceEEe
Confidence            48999999 99999999988754       44  7888998765421110             1111111      00 1


Q ss_pred             CCHHHHHhcCCEEEEeccC--Ch-hhhc-cc--CH-------HHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 017490          241 EDIFEFASKADVVVCCLSL--NK-QTAG-IV--NK-------SFLSS-MKKGSLLVNIARGGLLDYEAIAHYLECG  302 (370)
Q Consensus       241 ~~l~ell~~aDiV~l~lP~--t~-~t~~-li--~~-------~~l~~-mk~gailIN~sRg~~vd~~aL~~aL~~g  302 (370)
                      .+..+.+++||+|++..-.  .+ ++|- ++  |.       ..+.. -.+.+++|.++  ..+|.-..+-.=.+|
T Consensus       168 ~~~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs--NPvDv~t~v~~k~sg  241 (444)
T PLN00112        168 IDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG--NPCNTNALICLKNAP  241 (444)
T ss_pred             cCCHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC--CcHHHHHHHHHHHcC
Confidence            2445788999999998543  22 1111 22  11       13444 47899999997  566666655544443

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=88.75  E-value=0.73  Score=44.71  Aligned_cols=36  Identities=22%  Similarity=0.328  Sum_probs=32.1

Q ss_pred             cCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          176 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       176 ~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      .|.+|.|.|. |.+|+.+++.++.+|++|++..++..
T Consensus       151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~  187 (338)
T cd08295         151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDE  187 (338)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            5889999998 99999999999999999998876643

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]

Probab=88.74  E-value=0.41  Score=46.84  Aligned_cols=31  Identities=29%  Similarity=0.415  Sum_probs=27.5

Q ss_pred             ceEEEEecCchhHHHHHHhccCC--CEEEEEcC
Q 017490          178 KTVFILGFGNIGVELAKRLRPFG--VKIIATKR  208 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G--~~V~~~dr  208 (370)
                      .+|||=|||+||+.+++.+...+  |+|++++.
T Consensus         2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd   34 (335)
T COG0057           2 IKVAINGFGRIGRLVARAALERDGDIEVVAIND   34 (335)
T ss_pred             cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEec
Confidence            37999999999999999998764  99999876

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=88.62  E-value=0.45  Score=45.76  Aligned_cols=98  Identities=21%  Similarity=0.261  Sum_probs=57.9

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCCE-EEEEcCCCccccccccccchhhhccccccccccccCCCCCHH--HH--Hhc
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIF--EF--ASK  249 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~-V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--el--l~~  249 (370)
                      ..|.+|.|+|.|.+|+.+++.+++.|++ |++.+++.+.......    +    + ....+..  ...+..  ..  -..
T Consensus       158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~----g-~~~~~~~--~~~~~~~~~~~~~~~  226 (334)
T cd08234         158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKK----L----G-ATETVDP--SREDPEAQKEDNPYG  226 (334)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----h----C-CeEEecC--CCCCHHHHHHhcCCC
Confidence            3578999999999999999999999998 8888776433110000    0    0 0000000  001111  11  135


Q ss_pred             CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490          250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~  288 (370)
                      .|+++.+++...     .-...++.|+++..+++++...
T Consensus       227 vd~v~~~~~~~~-----~~~~~~~~l~~~G~~v~~g~~~  260 (334)
T cd08234         227 FDVVIEATGVPK-----TLEQAIEYARRGGTVLVFGVYA  260 (334)
T ss_pred             CcEEEECCCChH-----HHHHHHHHHhcCCEEEEEecCC
Confidence            788887765321     1234567788888888887654

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PRK09186 flagellin modification protein A; Provisional

Probab=88.58  E-value=0.49  Score=43.66  Aligned_cols=37  Identities=38%  Similarity=0.455  Sum_probs=33.2

Q ss_pred             ccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          175 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       175 l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      ++||++.|.|. |.||+.+|+.|...|++|++.+|+..
T Consensus         2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~   39 (256)
T PRK09186          2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKE   39 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChH
Confidence            57899999996 89999999999999999999988654

>PRK08862 short chain dehydrogenase; Provisional

Probab=88.54  E-value=0.5  Score=43.55  Aligned_cols=39  Identities=13%  Similarity=0.312  Sum_probs=34.0

Q ss_pred             cccCceEEEEecC-chhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          174 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       174 ~l~g~tvGIiGlG-~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      .++||++.|.|.+ .||+++|+.|...|++|+..+|+.+.
T Consensus         2 ~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~   41 (227)
T PRK08862          2 DIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSA   41 (227)
T ss_pred             CCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence            4689999999975 59999999999999999999887543

>PRK08339 short chain dehydrogenase; Provisional

Probab=88.52  E-value=0.58  Score=43.92  Aligned_cols=38  Identities=29%  Similarity=0.359  Sum_probs=33.9

Q ss_pred             cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      .+.||++.|.|. |.||+++|+.|...|++|++.+|+..
T Consensus         5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~   43 (263)
T PRK08339          5 DLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEE   43 (263)
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            478999999996 68999999999999999999998743

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	370
2d0i_A	333	Crystal Structure Ph0520 Protein From Pyrococcus Ho		9e-26
2gcg_A	330	Ternary Crystal Structure Of Human Glyoxylate Reduc		9e-26
1ygy_A	529	Crystal Structure Of D-3-Phosphoglycerate Dehydroge		1e-24
3ddn_A	528	Crystal Structure Of Hydroxypyruvic Acid Phosphate		1e-24
2h1s_A	328	Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE RE		7e-24
2g76_A	335	Crystal Structure Of Human 3-Phosphoglycerate Dehyd		2e-23
1wwk_A	307	Crystal Structure Of Phosphoglycerate Dehydrogenase		7e-22
2dbr_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		1e-21
2cuk_A	311	Crystal Structure Of Tt0316 Protein From Thermus Th		2e-21
2fss_A	365	Candida Boidinii Formate Dehydrogenase (Fdh) K47e M		4e-21
2j6i_A	364	Candida Boidinii Formate Dehydrogenase (Fdh) C-Term		4e-21
3k5p_A	416	Crystal Structure Of Amino Acid-Binding Act: D-Isom		1e-20
3n7u_A	351	Nad-Dependent Formate Dehydrogenase From Higher-Pla		1e-20
3naq_A	357	Apo-Form Of Nad-Dependent Formate Dehydrogenase Fro		2e-20
3ba1_A	333	Structure Of Hydroxyphenylpyruvate Reductase From C		2e-20
2ome_A	336	Crystal Structure Of Human Ctbp2 Dehydrogenase Comp		2e-20
2p9c_A	410	Crystal Structure Of Serine Bound G336v Mutant Of E		3e-20
2p9g_A	410	Crystal Structure Of Serine Bound G336v,G337v Doubl		3e-20
1gdh_A	320	Crystal Structure Of A Nad-Dependent D-Glycerate De		3e-20
2ekl_A	313	Structure Of St1218 Protein From Sulfolobus Tokodai		7e-20
2dbq_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		9e-20
4dgs_A	340	The Crystals Structure Of Dehydrogenase From Rhizob		2e-19
1sc6_A	404	Crystal Structure Of W139g D-3-Phosphoglycerate Deh		5e-19
1psd_A	409	The Allosteric Ligand Site In The Vmax-Type Coopera		1e-18
1hku_A	358	CtbpBARS: A DUAL-Function Protein Involved In Trans		4e-18
1hl3_A	358	CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK		5e-18
1mx3_A	347	Crystal Structure Of Ctbp Dehydrogenase Core Holo F		6e-18
4g2n_A	345	Crystal Structure Of Putative D-Isomer Specific 2-H		7e-18
1yba_A	410	The Active Form Of Phosphoglycerate Dehydrogenase L		2e-17
3ga0_A	358	Ctbp1BARS GLY172->glu Mutant Structure: Impairing N		3e-17
1dxy_A	333	Structure Of D-2-Hydroxyisocaproate Dehydrogenase L		2e-16
3kb6_A	334	Crystal Structure Of D-lactate Dehydrogenase From A		3e-16
2nac_A	393	High Resolution Structures Of Holo And Apo Formate		3e-16
2gug_A	401	Nad-dependent Formate Dehydrogenase From Pseudomona		3e-16
2go1_A	401	Nad-Dependent Formate Dehydrogenase From Pseudomona		3e-16
2gsd_A	402	Nad-dependent Formate Dehydrogenase From Bacterium		4e-16
3fn4_A	401	Apo-form Of Nad-dependent Formate Dehydrogenase Fro		5e-16
4e5p_A	332	Thermostable Phosphite Dehydrogenase A176r Variant		9e-16
4e5n_A	330	Thermostable Phosphite Dehydrogenase In Complex Wit		1e-15
4e5m_A	329	Thermostable Phosphite Dehydrogenase E175aA176R IN		1e-15
4e5k_A	329	Thermostable Phosphite Dehydrogenase In Complex Wit		1e-15
3gg9_A	352	Crystal Structure Of Putative D-3-Phosphoglycerate		2e-15
4ebf_A	334	Semet Thermostable Phosphite Dehydrogenase Glu175-A		2e-15
1xdw_A	331	Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase		3e-14
3evt_A	324	Crystal Structure Of Phosphoglycerate Dehydrogenase		5e-13
3kbo_A	315	2.14 Angstrom Crystal Structure Of Putative Oxidore		5e-13
3hg7_A	324	Crystal Structure Of D-Isomer Specific 2-Hydroxyaci		7e-13
2yq4_A	343	Crystal Structure Of D-isomer Specific 2-hydroxyaci		3e-12
2w2k_B	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		1e-11
2dld_A	337	D-Lactate Dehydrogenase Complexed With Nadh And Oxa		2e-11
2w2k_A	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		2e-11
2w2l_D	348	Crystal Structure Of The Holo Forms Of Rhodotorula		2e-11
1j49_A	333	Insights Into Domain Closure, Substrate Specificity		4e-11
1j4a_A	333	Insights Into Domain Closure, Substrate Specificity		5e-10
4hy3_A	365	Crystal Structure Of A Phosphoglycerate Oxidoreduct		5e-07
2o4c_A	380	Crystal Structure Of D-erythronate-4-phosphate Dehy		2e-06
1qp8_A	303	Crystal Structure Of A Putative Formate Dehydrogena		8e-06
3oet_A	381	D-Erythronate-4-Phosphate Dehydrogenase Complexed W		1e-05
3gvx_A	290	Crystal Structure Of Glycerate Dehydrogenase Relate		5e-05

>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus Horikoshii Ot3 Length = 333

Iteration: 1
 Score =  114 bits (285), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 133/266 (50%), Gaps = 32/266 (12%)
Query: 82  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 141
           + V  T ++    +  A ++K+I     G + +D+  AT+ GI V ++ G ++    + A
Sbjct: 46  IIVSPTTKITREVLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLS---EAVA 102
Query: 142 ELTIYLMLGLLRK----QNEMRMAIEQKKLGVPTG----ETLLGKTVFILGFGNIGVELA 193
           E T+ L++ L+RK       +R    +    + TG    E+L GK V ILG G IG  +A
Sbjct: 103 EFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIA 162
Query: 194 KRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 253
           +RL PFGVK+      W+ H +V+ +                 K  + DI E   K+D+V
Sbjct: 163 RRLIPFGVKLY----YWSRHRKVNVEKEL--------------KARYMDIDELLEKSDIV 204
Query: 254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW 313
           +  L L + T  I+N+  +  ++ G  LVNI RG L+D +A+   ++ G L G   DV  
Sbjct: 205 ILALPLTRDTYHIINEERVKKLE-GKYLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFE 263
Query: 314 TEPFDPNDPILKFK-NVLITPHVGGV 338
            EP   ++ + K++   ++TPH  G+
Sbjct: 264 KEPVREHE-LFKYEWETVLTPHYAGL 288

>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate ReductaseHYDROXYPYRUVATE REDUCTASE Length = 330

Iteration: 1
 Score =  114 bits (285), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 129/272 (47%), Gaps = 33/272 (12%)
Query: 101 MKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRM 160
           +K+I    VG++ + ++   + GI+V   P  +T    + AEL + L+L   R+  E   
Sbjct: 77  LKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTD---TTAELAVSLLLTTCRRLPE--- 130
Query: 161 AIEQKKLGVPT--------GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA 211
           AIE+ K G  T        G  L   TV I+G G IG  +A+RL+PFGV + + T R   
Sbjct: 131 AIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPR 190
Query: 212 SHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSF 271
                  Q+  ++                    E A+++D +V   SL   T G+ NK F
Sbjct: 191 PEEAAEFQAEFVSTP------------------ELAAQSDFIVVACSLTPATEGLCNKDF 232
Query: 272 LSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLI 331
              MK+ ++ +NI+RG +++ + +   L  G +   G+DV   EP   N P+L  KN +I
Sbjct: 233 FQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVI 292
Query: 332 TPHVGGVTEHSYRSMAKVVGDVALQLHAGTPL 363
            PH+G  T  +  +M+ +  +  L    G P+
Sbjct: 293 LPHIGSATHRTRNTMSLLAANNLLAGLRGEPM 324

>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase From Mycobacterium Tuberculosis Length = 529

Iteration: 1
 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/279 (30%), Positives = 144/279 (51%), Gaps = 25/279 (8%)
Query: 82  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 141
           L V     +D+  ++ A ++K++ + GVGL+ VD++AAT  G+ V   P   T N  S A
Sbjct: 48  LLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAP---TSNIHSAA 104
Query: 142 ELTIYLMLGLLRKQNEMRMAIEQK--KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPF 199
           E  + L+L   R+      ++ +   K    +G  + GKTV ++G G IG  +A+R+  F
Sbjct: 105 EHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAF 164
Query: 200 GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSL 259
           G  ++A    + S      +++ L ++   +DDL+             ++AD +   L  
Sbjct: 165 GAYVVAYD-PYVS----PARAAQLGIELLSLDDLL-------------ARADFISVHLPK 206
Query: 260 NKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDP 319
             +TAG+++K  L+  K G ++VN ARGGL+D  A+A  +  GH+   G+DV  TEP   
Sbjct: 207 TPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCT- 265
Query: 320 NDPILKFKNVLITPHVGGVT-EHSYRSMAKVVGDVALQL 357
           + P+ +   V++TPH+G  T E   R+   V   V L L
Sbjct: 266 DSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLAL 304

>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound D-3- Phosphoglycerate Dehydrogenase In Mycobacterium Tuberculosis Length = 528

Iteration: 1
 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/279 (30%), Positives = 144/279 (51%), Gaps = 25/279 (8%)
Query: 82  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 141
           L V     +D+  ++ A ++K++ + GVGL+ VD++AAT  G+ V   P   T N  S A
Sbjct: 47  LLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAP---TSNIHSAA 103
Query: 142 ELTIYLMLGLLRKQNEMRMAIEQK--KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPF 199
           E  + L+L   R+      ++ +   K    +G  + GKTV ++G G IG  +A+R+  F
Sbjct: 104 EHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAF 163
Query: 200 GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSL 259
           G  ++A    + S      +++ L ++   +DDL+             ++AD +   L  
Sbjct: 164 GAYVVAYD-PYVS----PARAAQLGIELLSLDDLL-------------ARADFISVHLPK 205
Query: 260 NKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDP 319
             +TAG+++K  L+  K G ++VN ARGGL+D  A+A  +  GH+   G+DV  TEP   
Sbjct: 206 TPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCT- 264
Query: 320 NDPILKFKNVLITPHVGGVT-EHSYRSMAKVVGDVALQL 357
           + P+ +   V++TPH+G  T E   R+   V   V L L
Sbjct: 265 DSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLAL 303

>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO Sapiens Length = 328

Iteration: 1
 Score =  108 bits (269), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 126/271 (46%), Gaps = 33/271 (12%)
Query: 101 MKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRM 160
           +K+I    VG++ + ++   + GI+V   P  +T    + AEL + L+L   R+  E   
Sbjct: 75  LKVISTXSVGIDHLALDEIKKRGIRVGYTPDVLTD---TTAELAVSLLLTTCRRLPE--- 128
Query: 161 AIEQKKLGVPT--------GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA 211
           AIE+ K G  T        G  L   TV I+G G IG  +A+RL+PFGV + + T R   
Sbjct: 129 AIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPR 188
Query: 212 SHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSF 271
                  Q+  ++                    E A+++D +V   SL   T G+ NK F
Sbjct: 189 PEEAAEFQAEFVSTP------------------ELAAQSDFIVVACSLTPATEGLCNKDF 230
Query: 272 LSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLI 331
               K+ ++ +NI+RG +++ + +   L  G +   G+DV   EP   N P+L  KN +I
Sbjct: 231 FQKXKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVI 290
Query: 332 TPHVGGVTEHSYRSMAKVVGDVALQLHAGTP 362
            PH+G  T  +  + + +  +  L    G P
Sbjct: 291 LPHIGSATHRTRNTXSLLAANNLLAGLRGEP 321

>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate Dehydrogenase Length = 335

Iteration: 1
 Score =  106 bits (264), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 140/291 (48%), Gaps = 32/291 (10%)
Query: 82  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 141
           L V    ++ ++ I+ A +++++ + G G++ VD+ AATR GI V   P    GN+ S A
Sbjct: 71  LIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTP---NGNSLSAA 127
Query: 142 ELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL 196
           ELT  +++ L R+  +   ++     E+KK     G  L GKT+ ILG G IG E+A R+
Sbjct: 128 ELTCGMIMCLARQIPQATASMKDGKWERKKF---MGTELNGKTLGILGLGRIGREVATRM 184
Query: 197 RPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 256
           + FG+K I      +     S     L +               E+I+      D +   
Sbjct: 185 QSFGMKTIGYDPIISPEVSASFGVQQLPL---------------EEIWPL---CDFITVH 226
Query: 257 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEP 316
             L   T G++N +  +  KKG  +VN ARGG++D  A+   L+ G   G  +DV   EP
Sbjct: 227 TPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP 286
Query: 317 FDPND-PILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL 366
             P D  ++  +NV+  PH+G  T+ +     + +    + +  G  LTG+
Sbjct: 287 --PRDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGKSLTGV 335

>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 307

Iteration: 1
 Score =  101 bits (251), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 79/255 (30%), Positives = 128/255 (50%), Gaps = 27/255 (10%)
Query: 89  RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM 148
           ++    I  A ++K+I + GVGL+ +D+ AA   GI+V   P     ++ S AEL + LM
Sbjct: 55  KVTRRVIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPA---ASSRSVAELAVGLM 111
Query: 149 LGLLRK----QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 204
             + RK      +MR  +  KK  +  G  L GKT+ I+GFG IG ++AK     G+ I+
Sbjct: 112 FSVARKIAFADRKMREGVWAKKEAM--GIELEGKTIGIIGFGRIGYQVAKIANALGMNIL 169
Query: 205 ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTA 264
                   +     +  A  V    +D           +     ++DVV   + L + T 
Sbjct: 170 L-------YDPYPNEERAKEVNGKFVD-----------LETLLKESDVVTIHVPLVESTY 211
Query: 265 GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPIL 324
            ++N+  L  MKK ++L+N +RG ++D  A+   L+ G + G G+DV   EP   + P+ 
Sbjct: 212 HLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLT 271
Query: 325 KFKNVLITPHVGGVT 339
           KF NV++TPH+G  T
Sbjct: 272 KFDNVVLTPHIGAST 286

>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1) Length = 334

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 139/285 (48%), Gaps = 25/285 (8%)
Query: 82  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 141
           L  + + R+D      A +++++  + VG + +DI  AT+ GI V   P  +T   A  A
Sbjct: 49  LVTMLSERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLA 108
Query: 142 ELTIYLMLGLLRKQNEMRMAIEQKKLGVP------TGETLLGKTVFILGFGNIGVELAKR 195
              +      + K +    + E KK GV        G  + GKT+ I+G G IG  +AKR
Sbjct: 109 FALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKR 168
Query: 196 LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 255
            + F ++I+     + S ++       L  +   ++DL+ E             +D VV 
Sbjct: 169 AKGFNMRIL-----YYSRTRKEEVERELNAEFKPLEDLLRE-------------SDFVVL 210
Query: 256 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE 315
            + L ++T  ++N+  L  MKK ++L+NIARG ++D  A+   L+ G + G G+DV   E
Sbjct: 211 AVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEE 270
Query: 316 PFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAG 360
           P+  N+ + K  NV++TPH+G  +  +   MA++V    +    G
Sbjct: 271 PYY-NEELFKLDNVVLTPHIGSASFGAREGMAELVAKNLIAFKRG 314

>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus Thermophilus Hb8 Length = 311

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 123/273 (45%), Gaps = 46/273 (16%)
Query: 89  RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVT------------GN 136
           R+D+  + RA  +K+I  + VG++ VD+ AA   GI+V   PG +T              
Sbjct: 54  RIDAEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAV 113
Query: 137 AASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL 196
           A    E   Y   GL +  +   +     +            T+ ++G G IG  +AKR 
Sbjct: 114 ARRVVEGAAYARDGLWKAWHPELLLGLDLQG----------LTLGLVGMGRIGQAVAKRA 163
Query: 197 RPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 256
             FG++++   R+             L      +++L+ E             ADVV   
Sbjct: 164 LAFGMRVVYHART----------PKPLPYPFLSLEELLKE-------------ADVVSLH 200
Query: 257 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEP 316
             L  +T  ++N+  L +MK+G++L+N ARG L+D EA+   L  GHL G G+DV   EP
Sbjct: 201 TPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEALR-GHLFGAGLDVTDPEP 259
Query: 317 FDPNDPILKFKNVLITPHVGGVTEHSYRSMAKV 349
             P  P+    N +ITPH+G     +   MA+V
Sbjct: 260 LPPGHPLYALPNAVITPHIGSAGRTTRERMAEV 292

>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant Length = 365

Iteration: 1
 Score = 99.0 bits (245), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/270 (29%), Positives = 121/270 (44%), Gaps = 32/270 (11%)
Query: 80  YHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTG-NAA 138
           +H   +   R+D     +A ++KL++  GVG + +D++   + G K++ +  +VTG N  
Sbjct: 70  FHPAYITKERID-----KAKKLKLVVVAGVGSDHIDLDYINQTGKKISVL--EVTGSNVV 122
Query: 139 SCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPT----GETLLGKTVFILGFGNIGVELAK 194
           S AE  +  ML L+R        I      V         + GKT+  +G G IG  + +
Sbjct: 123 SVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLE 182
Query: 195 RLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 254
           RL PF  K +      A       +  A  V+N               I E  ++AD+V 
Sbjct: 183 RLVPFNPKELLYYDYQALPKDAEEKVGARRVEN---------------IEELVAQADIVT 227
Query: 255 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWT 314
               L+  T G++NK  LS  KKG+ LVN ARG +   E +A  LE G L G G DV + 
Sbjct: 228 VNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFP 287
Query: 315 EPFDPNDPILKFKNVL-----ITPHVGGVT 339
           +P   + P    +N       +TPH  G T
Sbjct: 288 QPAPKDHPWRDMRNKYGAGNAMTPHYSGTT 317

>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal Mutant Length = 364

Iteration: 1
 Score = 99.0 bits (245), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/270 (29%), Positives = 121/270 (44%), Gaps = 32/270 (11%)
Query: 80  YHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTG-NAA 138
           +H   +   R+D     +A ++KL++  GVG + +D++   + G K++ +  +VTG N  
Sbjct: 69  FHPAYITKERID-----KAKKLKLVVVAGVGSDHIDLDYINQTGKKISVL--EVTGSNVV 121
Query: 139 SCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPT----GETLLGKTVFILGFGNIGVELAK 194
           S AE  +  ML L+R        I      V         + GKT+  +G G IG  + +
Sbjct: 122 SVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLE 181
Query: 195 RLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 254
           RL PF  K +      A       +  A  V+N               I E  ++AD+V 
Sbjct: 182 RLVPFNPKELLYYDYQALPKDAEEKVGARRVEN---------------IEELVAQADIVT 226
Query: 255 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWT 314
               L+  T G++NK  LS  KKG+ LVN ARG +   E +A  LE G L G G DV + 
Sbjct: 227 VNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFP 286
Query: 315 EPFDPNDPILKFKNVL-----ITPHVGGVT 339
           +P   + P    +N       +TPH  G T
Sbjct: 287 QPAPKDHPWRDMRNKYGAGNAMTPHYSGTT 316

>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain From Brucella Melitensis Length = 416

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 136/273 (49%), Gaps = 32/273 (11%)
Query: 78  ANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGN 136
           ++ H+  +++  +L     + AN++  +  F VG   V++ AA + GI V   P     N
Sbjct: 57  SSAHIIGIRSRTQLTEEIFAAANRLIAVGCFSVGTNQVELKAARKRGIPVFNAP---FSN 113
Query: 137 AASCAELTIYLMLGLLRKQNEMRMAIEQ---KKLGVPTGETLLGKTVFILGFGNIGVELA 193
             S AEL I  ++ L+R+     ++      +K  + + E + GKT+ I+G+GNIG ++ 
Sbjct: 114 TRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTAIGSRE-VRGKTLGIVGYGNIGSQVG 172
Query: 194 KRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 253
                 G+    T R + +  ++   +   A     +D+L+               +DVV
Sbjct: 173 NLAESLGM----TVRYYDTSDKLQYGNVKPAAS---LDELLK-------------TSDVV 212
Query: 254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW 313
              +  +K T+ ++ ++ L  MKKG+ L+N ARG  +D EA+A  L+ GHL G  IDV  
Sbjct: 213 SLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFP 272
Query: 314 TEPFDPND----PILKFKNVLITPHVGGVTEHS 342
            EP    +    P+   +NV++TPH+GG TE +
Sbjct: 273 VEPASNGERFSTPLQGLENVILTPHIGGSTEEA 305

>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabid Thaliana In Complex With Nad And Azide Length = 351

Iteration: 1
 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 113/236 (47%), Gaps = 23/236 (9%)
Query: 108 GVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKL 167
           G+G + +D+ AA   G+ VA + G    N  S AE  +  +L L+R        + + + 
Sbjct: 94  GIGSDHIDLQAAAAAGLTVAEVTG---SNVVSVAEDELMRILILMRNFVPGYNQVVKGEW 150
Query: 168 GVP----TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSAL 223
            V         L GKT+  +G G IG  L +RL+PFG  ++   R   +  ++  ++ A 
Sbjct: 151 NVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMA-PELEKETGAK 209
Query: 224 AVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVN 283
            V               ED+ E   K DV+V  + L ++T G+ NK  +  +KKG L+VN
Sbjct: 210 FV---------------EDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVN 254
Query: 284 IARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVT 339
            ARG +++ +A+   +E GH+GG   DV   +P   + P     N  +TPH  G T
Sbjct: 255 NARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTT 310

>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabidopsis Thaliana Length = 357

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 113/236 (47%), Gaps = 23/236 (9%)
Query: 108 GVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKL 167
           G+G + +D+ AA   G+ VA + G    N  S AE  +  +L L+R        + + + 
Sbjct: 100 GIGSDHIDLQAAAAAGLTVAEVTG---SNVVSVAEDELMRILILMRNFVPGYNQVVKGEW 156
Query: 168 GVP----TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSAL 223
            V         L GKT+  +G G IG  L +RL+PFG  ++   R   +  ++  ++ A 
Sbjct: 157 NVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMA-PELEKETGAK 215
Query: 224 AVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVN 283
            V               ED+ E   K DV+V  + L ++T G+ NK  +  +KKG L+VN
Sbjct: 216 FV---------------EDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVN 260
Query: 284 IARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVT 339
            ARG +++ +A+   +E GH+GG   DV   +P   + P     N  +TPH  G T
Sbjct: 261 NARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTT 316

>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blu Length = 333

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 130/278 (46%), Gaps = 32/278 (11%)
Query: 91  DSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLG 150
           D+  I    +++++  F VGL+ VD+      G++V   P  +T + A   +L I L+L 
Sbjct: 78  DAELIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVA---DLAIGLILA 134
Query: 151 LLRKQNEMRMAIEQK--KLG-VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 207
           +LR+  E    + +   K G         GK V I+G G IG+ +A+R   F   I    
Sbjct: 135 VLRRICECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFS 194
Query: 208 RSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIV 267
           RS   ++  +   S                     + E AS +D++V    L  +T  I+
Sbjct: 195 RSKKPNTNYTYYGS---------------------VVELASNSDILVVACPLTPETTHII 233
Query: 268 NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFK 327
           N+  + ++    +L+NI RG  +D   +   L  G LGG G+DV   EP  P + +   +
Sbjct: 234 NREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVP-EKLFGLE 292
Query: 328 NVLITPHVGGVTEHSYRSMAK-VVGDVALQLH-AGTPL 363
           NV++ PHVG  T  + + MA  VVG+  L+ H +G PL
Sbjct: 293 NVVLLPHVGSGTVETRKVMADLVVGN--LEAHFSGKPL 328

>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed With Nad(H) Length = 336

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 125/270 (46%), Gaps = 30/270 (11%)
Query: 87  TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIY 146
           T+ L    + +   +++I++ G G + VDI AA   GI V  IP   +      A+ TI 
Sbjct: 56  TITLTREDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIP---SAAVEETADSTIC 112
Query: 147 LMLGLLRKQNEMRMA---------IEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLR 197
            +L L R+   +  A         +EQ +        + G+T+ ++GFG  G  +A R +
Sbjct: 113 HILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAK 172
Query: 198 PFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL 257
            FG  +I     +  + Q   + S    +   + DL+ +  C            V + C 
Sbjct: 173 AFGFSVI----FYDPYLQDGIERSLGVQRVYTLQDLLYQSDC------------VSLHC- 215
Query: 258 SLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPF 317
           +LN+    ++N   +  M++G+ LVN ARGGL+D +A+A  L+ G + G  +DV  +EPF
Sbjct: 216 NLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHESEPF 275
Query: 318 D-PNDPILKFKNVLITPHVGGVTEHSYRSM 346
                P+    N++ TPH    +E +   M
Sbjct: 276 SFAQGPLKDAPNLICTPHTAWYSEQASLEM 305

>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 88/291 (30%), Positives = 133/291 (45%), Gaps = 40/291 (13%)
Query: 90  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 149
           L  + I+ A ++  I  F +G   VD++AA + GI V   P     N  S AEL I  +L
Sbjct: 65  LTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAP---FSNTRSVAELVIGELL 121
Query: 150 GLLRKQNEMRMAIEQ---KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKI--- 203
            LLR   E      +    KL   + E   GK + I+G+G+IG +L       G+ +   
Sbjct: 122 LLLRGVPEANAKAHRGVWNKLAAGSFEAR-GKKLGIIGYGHIGTQLGILAESLGMYVYFY 180
Query: 204 -IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQ 262
            I  K    + +QV   S  L                        + +DVV   +  N  
Sbjct: 181 DIENKLPLGNATQVQHLSDLL------------------------NMSDVVSLHVPENPS 216
Query: 263 TAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPND- 321
           T  ++    +S MK GSLL+N +RG ++D  A+A  L   HL G  IDV  TEP   +D 
Sbjct: 217 TKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDP 276
Query: 322 ---PILKFKNVLITPHVGGVTEHSYRSMA-KVVGDVALQLHAGTPLTGLEF 368
              P+ +F NVL+TPH+GG T+ +  ++  +V G +      G+ L+ + F
Sbjct: 277 FTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNF 327

>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 88/291 (30%), Positives = 133/291 (45%), Gaps = 40/291 (13%)
Query: 90  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 149
           L  + I+ A ++  I  F +G   VD++AA + GI V   P     N  S AEL I  +L
Sbjct: 65  LTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAP---FSNTRSVAELVIGELL 121
Query: 150 GLLRKQNEMRMAIEQ---KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKI--- 203
            LLR   E      +    KL   + E   GK + I+G+G+IG +L       G+ +   
Sbjct: 122 LLLRGVPEANAKAHRGVWNKLAAGSFEAR-GKKLGIIGYGHIGTQLGILAESLGMYVYFY 180
Query: 204 -IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQ 262
            I  K    + +QV   S  L                        + +DVV   +  N  
Sbjct: 181 DIENKLPLGNATQVQHLSDLL------------------------NMSDVVSLHVPENPS 216
Query: 263 TAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPND- 321
           T  ++    +S MK GSLL+N +RG ++D  A+A  L   HL G  IDV  TEP   +D 
Sbjct: 217 TKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDP 276
Query: 322 ---PILKFKNVLITPHVGGVTEHSYRSMA-KVVGDVALQLHAGTPLTGLEF 368
              P+ +F NVL+TPH+GG T+ +  ++  +V G +      G+ L+ + F
Sbjct: 277 FTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNF 327

>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate Dehydrogenase At 2.4 Angstroms Resolution Length = 320

Iteration: 1
 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 120/272 (44%), Gaps = 29/272 (10%)
Query: 100 QMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMR 159
            +K I  + +G + +D++A    GIKV   P  VT    + AE+ + L+LG  R+  E  
Sbjct: 67  NIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVT---VATAEIAMLLLLGSARRAGEGE 123
Query: 160 MAIEQKKLG--VP---TGETLLGKTVFILGFGNIGVELAKRLRPFGVKI--IATKRSWAS 212
             I  +      P    GE L  KT+ I GFG+IG  LAKR + F + I    T R+ +S
Sbjct: 124 KMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRA-SS 182
Query: 213 HSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFL 272
             + S Q++                  H+ +    S +           +T    NK+ +
Sbjct: 183 SDEASYQAT-----------------FHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATI 225
Query: 273 SSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLIT 332
            S+ +G+++VN ARG L+D E +   LE G L   G DV   EP + N+      N  + 
Sbjct: 226 KSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEP-NINEGYYDLPNTFLF 284
Query: 333 PHVGGVTEHSYRSMAKVVGDVALQLHAGTPLT 364
           PH+G     +   MA    D+   L  G  ++
Sbjct: 285 PHIGSAATQAREDMAHQANDLIDALFGGADMS 316

>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii Length = 313

Iteration: 1
 Score = 94.7 bits (234), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 133/279 (47%), Gaps = 34/279 (12%)
Query: 79  NYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNA 137
           NY + VV++  ++  + I +  ++K+I + G+GL+ +D   A +  IKV   PG  T   
Sbjct: 46  NYDIIVVRSRTKVTKDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTD-- 103
Query: 138 ASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV---PTGETLLGKTVFILGFGNIGVELAK 194
            S  ELTI LM+   RK   M  ++   K G+     G  L GKT+ I+GFG IG ++  
Sbjct: 104 -SAVELTIGLMIAAARK---MYTSMALAKSGIFKKIEGLELAGKTIGIVGFGRIGTKVGI 159
Query: 195 RLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 254
                G+K++A              + A++++                  E    +DV+ 
Sbjct: 160 IANAMGMKVLAYDILDIREKAEKINAKAVSLE------------------ELLKNSDVIS 201
Query: 255 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWT 314
             ++++K    I++      MK   ++VN +R   ++ +A+  Y++ G +     DV W 
Sbjct: 202 LHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWN 261
Query: 315 EPFDPND----PILKFKNVLITPHVGGVTEHSYRSMAKV 349
           EP  P +     +LK + V++T H+G  T+ + + +A++
Sbjct: 262 EP--PKEEWELELLKHERVIVTTHIGAQTKEAQKRVAEM 298

>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41) Length = 334

Iteration: 1
 Score = 94.4 bits (233), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 135/285 (47%), Gaps = 25/285 (8%)
Query: 82  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 141
           L    + R+D      A +++++  + VG + +DI  AT+ GI V   P  +T   A  A
Sbjct: 49  LVTXLSERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLA 108
Query: 142 ELTIYLMLGLLRKQNEMRMAIEQKKLGVP------TGETLLGKTVFILGFGNIGVELAKR 195
              +      + K +    + E KK GV        G  + GKT+ I+G G IG  +AKR
Sbjct: 109 FALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKR 168
Query: 196 LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 255
            + F  +I+     + S ++       L  +   ++DL+ E             +D VV 
Sbjct: 169 AKGFNXRIL-----YYSRTRKEEVERELNAEFKPLEDLLRE-------------SDFVVL 210
Query: 256 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE 315
            + L ++T  ++N+  L   KK ++L+NIARG ++D  A+   L+ G + G G+DV   E
Sbjct: 211 AVPLTRETYHLINEERLKLXKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEE 270
Query: 316 PFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAG 360
           P+  N+ + K  NV++TPH+G  +  +    A++V    +    G
Sbjct: 271 PYY-NEELFKLDNVVLTPHIGSASFGAREGXAELVAKNLIAFKRG 314

>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium Meliloti Length = 340

Iteration: 1
 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 117/254 (46%), Gaps = 29/254 (11%)
Query: 101 MKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRM 160
           + +I   GVG + VD+  A R  I V   PG +   A   A+L I L L +LR+  +   
Sbjct: 94  LGIIAINGVGTDKVDLARARRRNIDVTTTPGVL---ADDVADLGIALXLAVLRRVGDGDR 150
Query: 161 AIEQKKLG----VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQV 216
            + + +      +P G +  GK + +LG G IG  LA R   FG  +    R W      
Sbjct: 151 LVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGXSV----RYW------ 200
Query: 217 SCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMK 276
               S L+  + I          H+   + A  +DV+  C++ +  T  IV+ S L ++ 
Sbjct: 201 --NRSTLSGVDWI---------AHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALG 249
Query: 277 KGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVG 336
              ++VN+ARG ++D +A+   L+ G + G G+DV   EP   ++      N ++ PH G
Sbjct: 250 PEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSE-FHTTPNTVLXPHQG 308
Query: 337 GVTEHSYRSMAKVV 350
             T  +  +  K+V
Sbjct: 309 SATVETRXAXGKLV 322

>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate Dehydrogenase Complexed With Nad+ Length = 404

Iteration: 1
 Score = 92.0 bits (227), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 87/291 (29%), Positives = 129/291 (44%), Gaps = 40/291 (13%)
Query: 90  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 149
           L  + I+ A ++  I  F +G   VD++AA + GI V   P     N  S AEL I  +L
Sbjct: 59  LTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAP---FSNTRSVAELVIGELL 115
Query: 150 GLLRKQNEMRMAIEQ---KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKI--- 203
            LLR   E      +    KL   + E   GK + I+G+G+IG +L       G  +   
Sbjct: 116 LLLRGVPEANAKAHRGVGNKLAAGSFEAR-GKKLGIIGYGHIGTQLGILAESLGXYVYFY 174
Query: 204 -IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQ 262
            I  K    + +QV   S  L                        + +DVV   +  N  
Sbjct: 175 DIENKLPLGNATQVQHLSDLL------------------------NXSDVVSLHVPENPS 210
Query: 263 TAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPND- 321
           T        +S  K GSLL+N +RG ++D  A+A  L   HL G  IDV  TEP   +D 
Sbjct: 211 TKNXXGAKEISLXKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDP 270
Query: 322 ---PILKFKNVLITPHVGGVTEHSYRSMA-KVVGDVALQLHAGTPLTGLEF 368
              P+ +F NVL+TPH+GG T+ +  ++  +V G +      G+ L+ + F
Sbjct: 271 FTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNF 321

>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative Enzyme Phosphoglycerate Dehydrogenase Length = 409

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/291 (29%), Positives = 132/291 (45%), Gaps = 40/291 (13%)
Query: 90  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 149
           L  + I+ A ++  I  F +G   VD++AA + GI V   P     N  S AEL I  +L
Sbjct: 64  LTEDVINAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAP---FSNTRSVAELVIGELL 120
Query: 150 GLLRKQNEMRMAIEQ---KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKI--- 203
            LLR   E      +    KL   + E   GK + I+G+G+IG +L       G+ +   
Sbjct: 121 LLLRGVPEANAKAHRGVWNKLAAGSFEAR-GKKLGIIGYGHIGTQLGILAESLGMYVYFY 179
Query: 204 -IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQ 262
            I  K    + +QV   S  L                        + +DVV   +  N  
Sbjct: 180 DIENKLPLGNATQVQHLSDLL------------------------NMSDVVSLHVPENPS 215
Query: 263 TAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPND- 321
           T  ++    +S MK GSLL+N +RG ++D  A+   L   HL G  IDV  TEP   +D 
Sbjct: 216 TKNMMGAKEISLMKPGSLLINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDP 275
Query: 322 ---PILKFKNVLITPHVGGVTEHSYRSMA-KVVGDVALQLHAGTPLTGLEF 368
              P+ +F NVL+TPH+GG T+ +  ++  +V G +      G+ L+ + F
Sbjct: 276 FTSPLCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNF 326

>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In Transcription Corepression And Golgi Membrane Fission Length = 358

Iteration: 1
 Score = 89.0 bits (219), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 122/267 (45%), Gaps = 24/267 (8%)
Query: 87  TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPG---DVTGNAASCAEL 143
           T+ L    + +   +++I++ G G + +DI +A   GI V  +P    + T ++  C  L
Sbjct: 75  TITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHIL 134
Query: 144 TIYLMLGLLR---KQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFG 200
            +Y     L    ++     ++EQ +        + G+T+ I+G G +G  +A R + FG
Sbjct: 135 NLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFG 194
Query: 201 VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLN 260
             ++     +  +     + +    +   + DL+    C            V + C  LN
Sbjct: 195 FNVL----FYDPYLSDGIERALGLQRVSTLQDLLFHSDC------------VTLHC-GLN 237
Query: 261 KQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFD-P 319
           +    ++N   +  M++G+ LVN ARGGL+D +A+A  L+ G + G  +DV  +EPF   
Sbjct: 238 EHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFS 297
Query: 320 NDPILKFKNVLITPHVGGVTEHSYRSM 346
             P+    N++ TPH    +E +   M
Sbjct: 298 QGPLKDAPNLICTPHAAWYSEQASIEM 324

>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK PEPTIDE Length = 358

Iteration: 1
 Score = 88.6 bits (218), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 122/267 (45%), Gaps = 24/267 (8%)
Query: 87  TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPG---DVTGNAASCAEL 143
           T+ L    + +   +++I++ G G + +DI +A   GI V  +P    + T ++  C  L
Sbjct: 75  TITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHIL 134
Query: 144 TIYLMLGLLR---KQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFG 200
            +Y     L    ++     ++EQ +        + G+T+ I+G G +G  +A R + FG
Sbjct: 135 NLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFG 194
Query: 201 VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLN 260
             ++     +  +     + +    +   + DL+    C            V + C  LN
Sbjct: 195 FNVL----FYDPYLSDGIERALGLQRVSTLQDLLFHSDC------------VTLHC-GLN 237
Query: 261 KQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFD-P 319
           +    ++N   +  M++G+ LVN ARGGL+D +A+A  L+ G + G  +DV  +EPF   
Sbjct: 238 EHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFS 297
Query: 320 NDPILKFKNVLITPHVGGVTEHSYRSM 346
             P+    N++ TPH    +E +   M
Sbjct: 298 QGPLKDAPNLICTPHAAWYSEQASIEM 324

>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form Length = 347

Iteration: 1
 Score = 88.2 bits (217), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 123/268 (45%), Gaps = 26/268 (9%)
Query: 87  TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPG---DVTGNAASCAEL 143
           T+ L    + +   +++I++ G G + +DI +A   GI V  +P    + T ++  C  L
Sbjct: 72  TITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHIL 131
Query: 144 TIYLMLGLLR---KQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFG 200
            +Y     L    ++     ++EQ +        + G+T+ I+G G +G  +A R + FG
Sbjct: 132 NLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFG 191
Query: 201 VKIIATKRSWASHSQVSCQSSALAVKN-GIIDDLVDEKGCHEDIFEFASKADVVVCCLSL 259
             ++      +   +      AL ++    + DL+    C            V + C  L
Sbjct: 192 FNVLFYDPYLSDGVE-----RALGLQRVSTLQDLLFHSDC------------VTLHC-GL 233
Query: 260 NKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFD- 318
           N+    ++N   +  M++G+ LVN ARGGL+D +A+A  L+ G + G  +DV  +EPF  
Sbjct: 234 NEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSF 293
Query: 319 PNDPILKFKNVLITPHVGGVTEHSYRSM 346
              P+    N++ TPH    +E +   M
Sbjct: 294 SQGPLKDAPNLICTPHAAWYSEQASIEM 321

>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific 2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas Sp. Js6 66 Length = 345

Iteration: 1
 Score = 88.2 bits (217), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 118/268 (44%), Gaps = 30/268 (11%)
Query: 82  LCVVKTMRLDSNCISRANQ-MKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASC 140
           L V  T  + +  I +    +K I    VG + +D  AA   GIKV   P DV  +A  C
Sbjct: 75  LFVTATEAITAEVIRKLQPGLKTIATLSVGYDHIDXAAARSLGIKVLHTP-DVLSDA--C 131
Query: 141 AELTIYLMLGLLRKQNEMRMAIEQKKLGV--PT---GETLLGKTVFILGFGNIGVELAKR 195
           AE+   L+L   R+  E    +         PT   G  L G+ + I G G IG  +A R
Sbjct: 132 AEIAXLLVLNACRRGYEADRXVRSGSWPGWGPTQLLGXGLTGRRLGIFGXGRIGRAIATR 191
Query: 196 LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 255
            R FG+ I    R+  SH          A++ G I         H+ +      +D+ + 
Sbjct: 192 ARGFGLAIHYHNRTRLSH----------ALEEGAI--------YHDTLDSLLGASDIFLI 233
Query: 256 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE 315
                 +  G ++   ++ + +G++++NI+RG L++ +A+   L   HL   G+DV   E
Sbjct: 234 AAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANE 293
Query: 316 P-FDPNDPILKFKNVLITPHVGGVTEHS 342
           P  DP        N+ +TPH+G  T  +
Sbjct: 294 PAIDPR--YRSLDNIFLTPHIGSATHET 319

>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 128/291 (43%), Gaps = 40/291 (13%)
Query: 90  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 149
           L  + I+ A ++  I  F +G   VD++AA + GI V   P     N  S AEL I  +L
Sbjct: 65  LTEDVINAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAP---FSNTRSVAELVIGELL 121
Query: 150 GLLRKQNEMRMAIEQ---KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKI--- 203
            LLR   E      +    KL   + E   GK + I+G+G+IG +L       G  +   
Sbjct: 122 LLLRGVPEANAKAHRGVWNKLAAGSFEAR-GKKLGIIGYGHIGTQLGILAESLGXYVYFY 180
Query: 204 -IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQ 262
            I  K    + +QV   S  L                        + +DVV   +  N  
Sbjct: 181 DIENKLPLGNATQVQHLSDLL------------------------NXSDVVSLHVPENPS 216
Query: 263 TAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPND- 321
           T        +S  K GSLL+N +RG ++D  A+   L   HL G  IDV  TEP   +D 
Sbjct: 217 TKNXXGAKEISLXKPGSLLINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDP 276
Query: 322 ---PILKFKNVLITPHVGGVTEHSYRSMA-KVVGDVALQLHAGTPLTGLEF 368
              P+ +F NVL+TPH+GG T+ +  ++  +V G +      G+ L+ + F
Sbjct: 277 FTSPLCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNF 327

>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H) Binding And Dimerization Length = 358

Iteration: 1
 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 121/267 (45%), Gaps = 24/267 (8%)
Query: 87  TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPG---DVTGNAASCAEL 143
           T+ L    + +   +++I++ G G + +DI +A   GI V  +P    + T ++  C  L
Sbjct: 75  TITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHIL 134
Query: 144 TIYLMLGLLR---KQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFG 200
            +Y     L    ++     ++EQ +        + G+T+ I+G   +G  +A R + FG
Sbjct: 135 NLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLERVGQAVALRAKAFG 194
Query: 201 VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLN 260
             ++     +  +     + +    +   + DL+    C            V + C  LN
Sbjct: 195 FNVL----FYDPYLSDGIERALGLQRVSTLQDLLFHSDC------------VTLHC-GLN 237
Query: 261 KQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFD-P 319
           +    ++N   +  M++G+ LVN ARGGL+D +A+A  L+ G + G  +DV  +EPF   
Sbjct: 238 EHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFS 297
Query: 320 NDPILKFKNVLITPHVGGVTEHSYRSM 346
             P+    N++ TPH    +E +   M
Sbjct: 298 QGPLKDAPNLICTPHAAWYSEQASIEM 324

>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase Length = 333

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 125/272 (45%), Gaps = 51/272 (18%)
Query: 97  RANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQN 156
            A  +K +    VG + +D+ A  + GI+++ +P     + A+ AE  +   L LLR   
Sbjct: 65  HAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPA---YSPAAIAEFALTDTLYLLRNMG 121
Query: 157 EMRMAIEQ---KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH 213
           +++  ++    +K G   G+ L  +TV ++G G+IG    K  + FG K+IA        
Sbjct: 122 KVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAY------- 174
Query: 214 SQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS------KADVVVCCLSLNKQTAGIV 267
                             D    KG H D F++ S      ++DV+   +   +Q   I+
Sbjct: 175 ------------------DPYPMKGDHPD-FDYVSLEDLFKQSDVIDLHVPGIEQNTHII 215
Query: 268 NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDP-------- 319
           N++  + MK G++++N AR  L+D +A+   L+ G L G+GID    E  D         
Sbjct: 216 NEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGS 275
Query: 320 -NDP----ILKFKNVLITPHVGGVTEHSYRSM 346
             DP    +L   NV+++PH+   TE +  +M
Sbjct: 276 FKDPLWDELLGMPNVVLSPHIAYYTETAVHNM 307

>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex Aeolicus Complexed With Nad And Lactic Acid Length = 334

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 123/275 (44%), Gaps = 46/275 (16%)
Query: 89  RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM 148
           +L    +S+  ++KLI    VG + +D++   + GI V  IP     +  S AE T   +
Sbjct: 53  KLTEELLSKXPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPA---YSPESVAEHTFAXI 109
Query: 149 LGLLRKQNEMRMAIEQKKLGVPTGETLLGK-----TVFILGFGNIGVELAKRLRPFGVKI 203
           L L+++    R+    KKL       +L +     T+ ++G G IG  +A     FG K+
Sbjct: 110 LTLVKRLK--RIEDRVKKLNFSQDSEILARELNRLTLGVIGTGRIGSRVAXYGLAFGXKV 167
Query: 204 IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC-HEDIFEFASKADVVVCCLSLNKQ 262
           +             C      VK    +DL  EKGC +  + E   ++DV+   +   K+
Sbjct: 168 L-------------CYD---VVKR---EDL-KEKGCVYTSLDELLKESDVISLHVPYTKE 207
Query: 263 TAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPF----- 317
           T   +N+  +S  K G  L+N ARG ++D +A+    + G   GLG+DV   E       
Sbjct: 208 THHXINEERISLXKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKK 267
Query: 318 -------DPNDPILKF---KNVLITPHVGGVTEHS 342
                  D N  IL+     NV+ITPH+   T+ S
Sbjct: 268 YTEGKATDKNLKILELACKDNVIITPHIAYYTDKS 302

>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate Dehydrogenase Length = 393

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 109/251 (43%), Gaps = 27/251 (10%)
Query: 95  ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK 154
           I++A  +KL +  G+G + VD+ +A    + VA +      N+ S AE  + ++L L+R 
Sbjct: 108 IAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEV---TYCNSISVAEHVVMMILSLVR- 163
Query: 155 QNEMRMAIEQKKLG------VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR 208
            N +      +K G      V     L    V  +  G IG+ + +RL PF V +  T R
Sbjct: 164 -NYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDR 222
Query: 209 SWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVN 268
               H         L +               ED++      DVV     L+ +T  ++N
Sbjct: 223 ----HRLPESVEKELNLT---------WHATREDMYPVC---DVVTLNCPLHPETEHMIN 266
Query: 269 KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKN 328
              L   K+G+ +VN ARG L D +A+A  LE G L G   DV + +P   + P      
Sbjct: 267 DETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPY 326
Query: 329 VLITPHVGGVT 339
             +TPH+ G T
Sbjct: 327 NGMTPHISGTT 337

>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas Sp.101 In Complex With Formate Length = 401

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 110/256 (42%), Gaps = 27/256 (10%)
Query: 90  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 149
           L    I++A  +KL +  G+G + VD+ +A    + VA +      N+ S AE  + ++L
Sbjct: 104 LTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEV---TYCNSISVAEHVVMMIL 160
Query: 150 GLLRKQNEMRMAIEQKKLG------VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKI 203
            L+R  N +      +K G      V     L    V  +  G IG+ + +RL PF V +
Sbjct: 161 SLVR--NYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHL 218
Query: 204 IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQT 263
             T R    H         L +               ED++      DVV     L+ +T
Sbjct: 219 HYTDR----HRLPESVEKELNLT---------WHATREDMYPVC---DVVTLNCPLHPET 262
Query: 264 AGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPI 323
             ++N   L   K+G+ +VN ARG L D +A+A  LE G L G   DV + +P   + P 
Sbjct: 263 EHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPW 322
Query: 324 LKFKNVLITPHVGGVT 339
                  +TPH+ G T
Sbjct: 323 RTMPYNGMTPHISGTT 338

>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas Sp.101 Length = 401

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 109/251 (43%), Gaps = 27/251 (10%)
Query: 95  ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK 154
           I++A  +KL +  G+G + VD+ +A    + VA +      N+ S AE  + ++L L+R 
Sbjct: 109 IAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEV---TYCNSISVAEHVVMMILSLVR- 164
Query: 155 QNEMRMAIEQKKLG------VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR 208
            N +      +K G      V     L    V  +  G IG+ + +RL PF V +  T R
Sbjct: 165 -NYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDR 223
Query: 209 SWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVN 268
               H         L +               ED++      DVV     L+ +T  ++N
Sbjct: 224 ----HRLPESVEKELNLT---------WHATREDMYPVC---DVVTLNCPLHPETEHMIN 267
Query: 269 KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKN 328
              L   K+G+ +VN ARG L D +A+A  LE G L G   DV + +P   + P      
Sbjct: 268 DETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPY 327
Query: 329 VLITPHVGGVT 339
             +TPH+ G T
Sbjct: 328 NGMTPHISGTT 338

>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c2 In Complex With Nad And Azide Length = 402

Iteration: 1
 Score = 82.4 bits (202), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 110/254 (43%), Gaps = 23/254 (9%)
Query: 90  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 149
           L +  I++A ++KL +  G+G + VD+ AA    I VA +      N+ S AE  + ++L
Sbjct: 104 LTAERIAKAPKLKLALTAGIGSDHVDLQAAIDNNITVAEV---TYCNSNSVAEHVVMMVL 160
Query: 150 GLLRK----QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 205
           GL+R      +  R         V     + G  V  +  G IG+ + + L PF + +  
Sbjct: 161 GLVRNYIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHY 220
Query: 206 TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAG 265
           T R    H         L +               ED++      DVV     L+ +T  
Sbjct: 221 TDR----HRLPEAVEKELNLT---------WHATREDMY---GACDVVTLNCPLHPETEH 264
Query: 266 IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILK 325
           ++N   L   K+G+ LVN ARG L D +AI   LE G L G   DV + +P   + P   
Sbjct: 265 MINDETLKLFKRGAYLVNTARGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRT 324
Query: 326 FKNVLITPHVGGVT 339
             +  +TPH+ G +
Sbjct: 325 MPHNGMTPHISGTS 338

>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c-1 In Closed Conformation Length = 401

Iteration: 1
 Score = 82.0 bits (201), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 110/254 (43%), Gaps = 23/254 (9%)
Query: 90  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 149
           L +  I++A ++KL +  G+G + VD+ AA    I VA +      N+ S AE  + ++L
Sbjct: 103 LTAERIAKAPKLKLALTAGIGSDHVDLQAAIDNNITVAEV---TYCNSNSVAEHVVMMVL 159
Query: 150 GLLRK----QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 205
           GL+R      +  R         V     + G  V  +  G IG+ + + L PF + +  
Sbjct: 160 GLVRNYIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHY 219
Query: 206 TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAG 265
           T R    H         L +               ED++      DVV     L+ +T  
Sbjct: 220 TDR----HRLPEAVEKELNLT---------WHATREDMY---GACDVVTLNCPLHPETEH 263
Query: 266 IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILK 325
           ++N   L   K+G+ LVN ARG L D +AI   LE G L G   DV + +P   + P   
Sbjct: 264 MINDETLKLFKRGAYLVNTARGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRT 323
Query: 326 FKNVLITPHVGGVT 339
             +  +TPH+ G +
Sbjct: 324 MPHNGMTPHISGTS 337

>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In Complex With Nad Length = 332

Iteration: 1
 Score = 81.3 bits (199), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 125/283 (44%), Gaps = 31/283 (10%)
Query: 89  RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM 148
           R+D++ +    ++++I     G +  D++A T  G+ +  +P  +T      AEL I L 
Sbjct: 56  RVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLT---VPTAELAIGLA 112
Query: 149 LGLLRKQNEMRMAIE--QKKLGVPT--GETLLGKTVFILGFGNIGVELAKRLRPFGVKII 204
           +GL R        +   Q +   P   G  L   TV  LG G IG+ +A RL+ +G    
Sbjct: 113 VGLGRHLRAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWG---- 168
Query: 205 ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTA 264
           AT +  A  +  +     L ++         +  C E    FAS +D ++  L LN  T 
Sbjct: 169 ATLQYHARKALDTQTEQRLGLR---------QVACSE---LFAS-SDFILLALPLNADTL 215
Query: 265 GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV----AWTEPFDPN 320
            +VN   L+ ++ G+LLVN  RG ++D  A+   LE G LGG   DV     W     P 
Sbjct: 216 HLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQ 275
Query: 321 --DP-ILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAG 360
             DP +L   N L TPH+G         + +      LQ  AG
Sbjct: 276 QIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQALAG 318

>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad Length = 330

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 122/283 (43%), Gaps = 31/283 (10%)
Query: 89  RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM 148
           R+D++ +    ++++I     G +  D++A T  G+ +  +P  +T      AEL I L 
Sbjct: 56  RVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLT---VPTAELAIGLA 112
Query: 149 LGLLRKQNEMRMAIEQKKL--GVPT--GETLLGKTVFILGFGNIGVELAKRLRPFGVKII 204
           +GL R        +   K     P   G  L   TV  LG G IG+ +A RL+ +G  + 
Sbjct: 113 VGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATL- 171
Query: 205 ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTA 264
                   + +     +    + G+      +  C E    FAS +D ++  L LN  T 
Sbjct: 172 -------QYHEAKALDTQTEQRLGL-----RQVACSE---LFAS-SDFILLALPLNADTL 215
Query: 265 GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV----AWTEPFDPN 320
            +VN   L+ ++ G+LLVN  RG ++D  A+   LE G LGG   DV     W     P 
Sbjct: 216 HLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQ 275
Query: 321 --DP-ILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAG 360
             DP +L   N L TPH+G         + +      LQ  AG
Sbjct: 276 QIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQALAG 318

>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX WITH NADP Length = 329

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 125/283 (44%), Gaps = 31/283 (10%)
Query: 89  RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM 148
           R+D++ +    ++++I     G +  D++A T  G+ +  +P  +T      AEL I L 
Sbjct: 56  RVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLT---VPTAELAIGLA 112
Query: 149 LGLLRKQNEMRMAIE--QKKLGVPT--GETLLGKTVFILGFGNIGVELAKRLRPFGVKII 204
           +GL R        +   Q +   P   G  L   TV  LG G IG+ +A RL+ +G    
Sbjct: 113 VGLGRHLRAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWG---- 168
Query: 205 ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTA 264
           AT +  A  +  +     L ++         +  C E    FAS +D ++  L LN  T 
Sbjct: 169 ATLQYHARKALDTQTEQRLGLR---------QVACSE---LFAS-SDFILLALPLNADTL 215
Query: 265 GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV----AWTEPFDPN 320
            +VN   L+ ++ G+LLVN  RG ++D  A+   LE G LGG   DV     W     P 
Sbjct: 216 HLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQ 275
Query: 321 --DP-ILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAG 360
             DP +L   N L TPH+G         + +      LQ  AG
Sbjct: 276 QIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQALAG 318

>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad And Sulfite Length = 329

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 122/283 (43%), Gaps = 31/283 (10%)
Query: 89  RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM 148
           R+D++ +    ++++I     G +  D++A T  G+ +  +P  +T      AEL I L 
Sbjct: 56  RVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLT---VPTAELAIGLA 112
Query: 149 LGLLRKQNEMRMAIEQKKL--GVPT--GETLLGKTVFILGFGNIGVELAKRLRPFGVKII 204
           +GL R        +   K     P   G  L   TV  LG G IG+ +A RL+ +G  + 
Sbjct: 113 VGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATL- 171
Query: 205 ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTA 264
                   + +     +    + G+      +  C E    FAS +D ++  L LN  T 
Sbjct: 172 -------QYHEAKALDTQTEQRLGL-----RQVACSE---LFAS-SDFILLALPLNADTL 215
Query: 265 GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV----AWTEPFDPN 320
            +VN   L+ ++ G+LLVN  RG ++D  A+   LE G LGG   DV     W     P 
Sbjct: 216 HLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQ 275
Query: 321 --DP-ILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAG 360
             DP +L   N L TPH+G         + +      LQ  AG
Sbjct: 276 QIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQALAG 318

>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate Dehydrogenase Oxidoreductase From Ralstonia Solanacearum Length = 352

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 122/273 (44%), Gaps = 41/273 (15%)
Query: 89  RLDSNCISRANQMKLIMQFG-VGLEG---VDINAATRCGIKVARIPGDVTGNAASCAELT 144
           R+    + R  ++K+I Q G V  +    +D+ A T  G+ V     +  G+  + AELT
Sbjct: 60  RVTRQLLDRLPKLKIISQTGRVSRDAGGHIDLEACTDKGVVVL----EGKGSPVAPAELT 115
Query: 145 IYLMLGLLRK--------------QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGV 190
             L++   R+              Q+ ++        G+  G  L G+T+ I G+G IG 
Sbjct: 116 WALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGI--GRVLKGQTLGIFGYGKIGQ 173
Query: 191 ELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 250
            +A   R FG+ ++   R    +S+   ++   AV               + +FE   ++
Sbjct: 174 LVAGYGRAFGMNVLVWGRE---NSKERARADGFAVAE-----------SKDALFE---QS 216
Query: 251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGID 310
           DV+   L LN +T  I+  + L+ MK  +L VN +R  L++   +   L  G  G   ID
Sbjct: 217 DVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAID 276
Query: 311 VAWTEPFDPNDPILKFKNVLITPHVGGVTEHSY 343
           V  TEP      +L+ +N + TPH+G V   SY
Sbjct: 277 VFETEPILQGHTLLRMENCICTPHIGYVERESY 309

>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala Mutant Length = 334

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 125/283 (44%), Gaps = 31/283 (10%)
Query: 89  RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM 148
           R+D++ +    ++++I     G +  D++A T  G+ +  +P  +T      AEL I L 
Sbjct: 57  RVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLT---VPTAELAIGLA 113
Query: 149 LGLLRKQNEMRMAIE--QKKLGVPT--GETLLGKTVFILGFGNIGVELAKRLRPFGVKII 204
           +GL R        +   Q +   P   G  L   TV  LG G IG+  A RL+ +G    
Sbjct: 114 VGLGRHLRAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGXGAIGLAXADRLQGWG---- 169
Query: 205 ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTA 264
           AT +  A+ +  +     L ++         +  C E    FAS +D ++  L LN  T 
Sbjct: 170 ATLQYHAAKALDTQTEQRLGLR---------QVACSE---LFAS-SDFILLALPLNADTL 216
Query: 265 GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV----AWTEPFDPN 320
            +VN   L+ ++ G+LLVN  RG ++D  A+   LE G LGG   DV     W     P 
Sbjct: 217 HLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEXEDWARADRPQ 276
Query: 321 --DP-ILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAG 360
             DP +L   N L TPH+G         + +      LQ  AG
Sbjct: 277 QIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQALAG 319

>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From Acidaminococcus Fermentans Length = 331

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 90  LDSNCISRANQMKLIMQFGV--------GLEGVDINAATRCGIKVARIPGDVTGNAASCA 141
           L  NC +    + +  + GV        G + +D   A   G  +A +P     +  + A
Sbjct: 51  LRGNCFANKQNLDIYKKLGVKYILTRTAGTDHIDKEYAKELGFPMAFVP---RYSPNAIA 107
Query: 142 ELTIYLMLGLLRKQNEMRMAIEQKKLGVPT---GETLLGKTVFILGFGNIGVELAKRLRP 198
           EL +   + LLR          +K   V      + +   TV ++G G IG   A+    
Sbjct: 108 ELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSKEVRNCTVGVVGLGRIGRVAAQIFHG 167
Query: 199 FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLS 258
            G  +I          +  C   +L                     E   K+D++     
Sbjct: 168 MGATVIGEDVFEIKGIEDYCTQVSLD--------------------EVLEKSDIITIHAP 207
Query: 259 LNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEP-- 316
             K+   +V + FL  MK G++LVN ARG L+D EA+   +E G LGG G DV   E   
Sbjct: 208 YIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASV 267
Query: 317 FDPN-------DPILK-----FKNVLITPHVGGVTEHSYRSMAKV 349
           F  +       +P+ +     +  VLITPH+G  T+ + ++M +V
Sbjct: 268 FGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKNMVEV 312

>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Lactobacillus Plantarum Length = 324

Iteration: 1
 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 101/245 (41%), Gaps = 23/245 (9%)
Query: 99  NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEM 158
           NQ+K +     G++ + + A    G+ VA   G    +A + +E  +  ML ++R  +  
Sbjct: 60  NQLKFVQVISAGVDYLPLKALQAAGVVVANTSGI---HADAISESVLAAMLSVVRGYHAA 116
Query: 159 RMAIE-QKKLGVP-TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQV 216
            +     ++  +P T  TL G+ + I G G IG  LA +    G+ +I    +       
Sbjct: 117 WLNQRGARQWALPMTTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTT------- 169
Query: 217 SCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMK 276
                      G   D   E        +  + A+ +V  L L   T  + +       K
Sbjct: 170 -----------GHPADHFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTK 218
Query: 277 KGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVG 336
           +  +L+NI RG  +D  A+   L+   L    +DV   EP   + P+ +  +VLITPH+ 
Sbjct: 219 QQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHIS 278
Query: 337 GVTEH 341
           G   H
Sbjct: 279 GQIAH 283

>pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase (ycdw) From Salmonella Typhimurium In Complex With Nadp Length = 315

Iteration: 1
 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 118/272 (43%), Gaps = 29/272 (10%)
Query: 100 QMKLIMQFGVGLEGV--DINAATR---CGIKVARIPGDVTGNAASCAELTIYLMLGLLRK 154
           ++K +   G G++ +   +NA        I + R+  + TG      E  +  +L   R+
Sbjct: 59  RLKAVFVLGAGVDAILSKLNAHPEXLDASIPLFRL--EDTGXGLQXQEYAVSQVLHWFRR 116
Query: 155 QNEMRMAIEQKKLGVPTGE-TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH 213
            ++ + A++ + L  P  E T    +V I G G +G ++A+ L+ +G  +    R W S 
Sbjct: 117 FDDYQ-ALKNQALWKPLPEYTREEFSVGIXGAGVLGAKVAESLQAWGFPL----RCW-SR 170
Query: 214 SQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLS 273
           S+ S                V+     E++  F ++  V++  L    QT GI+N   L 
Sbjct: 171 SRKSWPG-------------VESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLD 217
Query: 274 SMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITP 333
            +  G+ ++N+ARG  +    +   L+ G L G  +DV   EP     P+ +   V  TP
Sbjct: 218 QLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAXLDVFSQEPLPQESPLWRHPRVAXTP 277
Query: 334 HVGGVTEHSYRSMAKVVGDVALQLHAGTPLTG 365
           H+  VT  +       +     QL  G P+TG
Sbjct: 278 HIAAVTRPA--EAIDYISRTITQLEKGEPVTG 307

>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid Dehydrogenase Family Protein From Aeromonas Salmonicida Subsp. Salmonicida A449 Length = 324

Iteration: 1
 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 108/259 (41%), Gaps = 33/259 (12%)
Query: 81  HLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCG-----IKVARIPGDVTG 135
           H+ + +  R     +++AN++     F     GVD+    RC        V  I G +  
Sbjct: 49  HILMAEPARAKP-LLAKANKLSW---FQSTYAGVDVLLDARCRRDYQLTNVRGIFGPLMS 104
Query: 136 NAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKR 195
                  L++   L L R+Q + R+       G      L G+T+ ILG G+IG  +A  
Sbjct: 105 EYVFGHLLSLMRQLPLYREQQKQRLWQSHPYQG------LKGRTLLILGTGSIGQHIAHT 158
Query: 196 LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 255
            + FG+K++   RS    +    Q   L   N ++                 ++ADV+V 
Sbjct: 159 GKHFGMKVLGVSRSGRERAGFD-QVYQLPALNKML-----------------AQADVIVS 200
Query: 256 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE 315
            L   ++T  +   S     K G++L N+ RG  ++   +   L  G LG   +DV   E
Sbjct: 201 VLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQE 260
Query: 316 PFDPNDPILKFKNVLITPH 334
           P   + P+    N++ITPH
Sbjct: 261 PLPADSPLWGQPNLIITPH 279

>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid Dehydrogenase From Lactobacillus Delbrueckii Ssp. Bulgaricus Length = 343

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 106/258 (41%), Gaps = 40/258 (15%)
Query: 109 VGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQK-KL 167
           VG   ++ +   +  + V  +P     +  + AE+T+   + LLRK  E R  ++     
Sbjct: 79  VGFNTINFDWTKKYNLLVTNVP---VYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDF 135
Query: 168 GVPT---GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALA 224
             P+      +   TV ++G G+IG  +A+     G K+IA   ++    +         
Sbjct: 136 TWPSNLISNEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPEFEPFL------ 189
Query: 225 VKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNI 284
                          + D      +AD+V     L   T  ++ +  L  MKK + L+N 
Sbjct: 190 --------------TYTDFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINC 235
Query: 285 ARGGLLDYEAIAHYLECGHLGGLGID-----------VAWTEPFDPND--PILKFKNVLI 331
           ARG L+D  A+   L+ G + G G+D              T+   P D   + K  NV+I
Sbjct: 236 ARGELVDTGALIKALQDGEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVVI 295
Query: 332 TPHVGGVTEHSYRSMAKV 349
           TPH    TE S R+M ++
Sbjct: 296 TPHSAFYTETSIRNMVQI 313

>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a Length = 348

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 123/267 (46%), Gaps = 40/267 (14%)
Query: 99  NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEM 158
           + +K+    G G + +D++A    G+  A   G   G+ A+ ++L +YL+L + R  +  
Sbjct: 79  SSLKVFAAAGAGFDWLDLDALNERGVAFANSRG--AGDTAT-SDLALYLILSVFRLASYS 135
Query: 159 RMAIEQKKLGVP------------TGETLLGKTVFILGFGNIGVELAKR-LRPFGVKIIA 205
             A    + G P            +     G  +  +G G I  E+A++ +   G+K++ 
Sbjct: 136 ERA---ARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVY 192
Query: 206 TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAG 265
              + A     +    AL  +   +D L           E A ++D V   +   K T  
Sbjct: 193 YDVAPAD----AETEKALGAER--VDSLE----------ELARRSDCVSVSVPYMKLTHH 236
Query: 266 IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPN--DPI 323
           +++++F ++MK GS +VN ARG ++  +A+   L+ G L   G+DV     F+PN    +
Sbjct: 237 LIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDV---HEFEPNVSKEL 293
Query: 324 LKFKNVLITPHVGGVTEHSYRSMAKVV 350
           ++ K+V +T H+GGV   ++    ++ 
Sbjct: 294 IEMKHVTLTTHIGGVAIETFHEFERLT 320

>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate Length = 337

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 110/253 (43%), Gaps = 37/253 (14%)
Query: 109 VGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEM--RMAIEQKK 166
           VG++ +D++ A   G ++  +P     +  + AE        +LR+   M  +MA    +
Sbjct: 79  VGVDNIDMDKAKELGFQITNVP---VYSPNAIAEHAAIQAARVLRQDKRMDEKMAKRDLR 135
Query: 167 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVK 226
                G  +  + V ++G G+IG    + +  FG K+IA             ++  L  K
Sbjct: 136 WAPTIGREVRDQVVGVVGTGHIGQVFMRIMEGFGAKVIAYD---------IFKNPELEKK 186
Query: 227 NGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR 286
              +D L       +D+++   +ADV+   +        ++N   ++ MK G ++VN +R
Sbjct: 187 GYYVDSL-------DDLYK---QADVISLHVPDVPANVHMINDKSIAEMKDGVVIVNCSR 236
Query: 287 GGLLDYEAIAHYLECGHLGGLGIDV----------AWTEPFDPND---PILKFKNVLITP 333
           G L+D +A+   L+ G + G  +D            W     P+     ++   NVL+TP
Sbjct: 237 GRLVDTDAVIRGLDSGKIFGFVMDTYEDEVGVFNKDWEGKEFPDKRLADLIDRPNVLVTP 296
Query: 334 HVGGVTEHSYRSM 346
           H    T H+ R+M
Sbjct: 297 HTAFYTTHAVRNM 309

>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a. Length = 348

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 122/265 (46%), Gaps = 36/265 (13%)
Query: 99  NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEM 158
           + +K+    G G + +D++A    G+  A   G   G+ A+ ++L +YL+L + R  +  
Sbjct: 79  SSLKVFAAAGAGFDWLDLDALNERGVAFANSRG--AGDTAT-SDLALYLILSVFRLASYS 135
Query: 159 RMAIEQKKLGVP------------TGETLLGKTVFILGFGNIGVELAKR-LRPFGVKIIA 205
             A    + G P            +     G  +  +G G I  E+A++ +   G+K++ 
Sbjct: 136 ERA---ARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVY 192
Query: 206 TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAG 265
              + A     +    AL  +   +D L           E A ++D V   +   K T  
Sbjct: 193 YDVAPAD----AETEKALGAER--VDSLE----------ELARRSDCVSVSVPYMKLTHH 236
Query: 266 IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILK 325
           +++++F ++MK GS +VN ARG ++  +A+   L+ G L   G+DV   EP   +  +++
Sbjct: 237 LIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEP-QVSKELIE 295
Query: 326 FKNVLITPHVGGVTEHSYRSMAKVV 350
            K+V +T H+GGV   ++    ++ 
Sbjct: 296 MKHVTLTTHIGGVAIETFHEFERLT 320

>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 2.5a Length = 348

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 122/265 (46%), Gaps = 36/265 (13%)
Query: 99  NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEM 158
           + +K+    G G + +D++A    G+  A   G   G+ A+ ++L +YL+L + R  +  
Sbjct: 79  SSLKVFAAAGAGFDWLDLDALNERGVAFANSRG--AGDTAT-SDLALYLILSVFRLASYS 135
Query: 159 RMAIEQKKLGVP------------TGETLLGKTVFILGFGNIGVELAKR-LRPFGVKIIA 205
             A    + G P            +     G  +  +G G I  E+A++ +   G+K++ 
Sbjct: 136 ERA---ARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVY 192
Query: 206 TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAG 265
              + A     +    AL  +   +D L           E A ++D V   +   K T  
Sbjct: 193 YDVAPAD----AETEKALGAER--VDSLE----------ELARRSDCVSVSVPYMKLTHH 236
Query: 266 IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILK 325
           +++++F ++MK GS +VN ARG ++  +A+   L+ G L   G+DV   EP   +  +++
Sbjct: 237 LIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEP-QVSKELIE 295
Query: 326 FKNVLITPHVGGVTEHSYRSMAKVV 350
            K+V +T H+GGV   ++    ++ 
Sbjct: 296 MKHVTLTTHIGGVAIETFHEFERLT 320

>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 119/274 (43%), Gaps = 41/274 (14%)
Query: 109 VGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG 168
           VG++ +D+  A   G ++  +P     +  + AE        +LR+   M   + +  L 
Sbjct: 79  VGVDNIDMAKAKELGFQITNVP---VYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLR 135
Query: 169 -VPT-GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVK 226
             PT G  +  + V ++G G+IG    + +  FG K+I              ++  L  K
Sbjct: 136 WAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYD---------IFRNPELEKK 186
Query: 227 NGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR 286
              +D L       +D+++   +ADV+   +        ++N   ++ MK+  ++VN++R
Sbjct: 187 GYYVDSL-------DDLYK---QADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSR 236
Query: 287 GGLLDYEAIAHYLECGHLGGLGIDV----------AWTEPFDPN---DPILKFKNVLITP 333
           G L+D +A+   L+ G + G  +DV           W     P+     ++   NVL+TP
Sbjct: 237 GPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTP 296
Query: 334 HVGGVTEHSYRSMAKVVGDVALQL----HAGTPL 363
           H    T H+ R+M     D  L+L     A TP+
Sbjct: 297 HTAFYTTHAVRNMVVKAFDNNLELVEGKEAETPV 330

>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 118/274 (43%), Gaps = 41/274 (14%)
Query: 109 VGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG 168
           VG++ +D+  A   G ++  +P     +  + AE        +LR+   M   + +  L 
Sbjct: 79  VGVDNIDMAKAKELGFQITNVP---VYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLR 135
Query: 169 -VPT-GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVK 226
             PT G  +  + V ++G G+IG    + +  FG K+I              ++  L  K
Sbjct: 136 WAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYD---------IFRNPELEKK 186
Query: 227 NGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR 286
              +D L       +D+++   +ADV+   +        ++N   ++ MK+  ++VN++R
Sbjct: 187 GYYVDSL-------DDLYK---QADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSR 236
Query: 287 GGLLDYEAIAHYLECGHLGGLGIDV----------AWTEPFDPN---DPILKFKNVLITP 333
           G L+D +A+   L+ G + G  +DV           W     P+     ++   NVL+TP
Sbjct: 237 GPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTP 296
Query: 334 HVGGVTEHSYRSMAKVVGDVALQL----HAGTPL 363
                T H+ R+M     D  L+L     A TP+
Sbjct: 297 KTAFYTTHAVRNMVVKAFDNNLELVEGKEAETPV 330

>pdb|4HY3|A Chain A, Crystal Structure Of A Phosphoglycerate Oxidoreductase From Rhizobium Etli Length = 365

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/225 (20%), Positives = 93/225 (41%), Gaps = 28/225 (12%)
Query: 137 AASCAELTIYLMLGLLRKQNEMRMAIEQKKL-----GVPTGETLLGKTVFILGFGNIGVE 191
           A   AE+ +   L L R   +  +A ++        G  +   + G  + I+GFG++G  
Sbjct: 131 AEPVAEIGLGFALALARGIVDADIAFQEGTELWGGEGNASARLIAGSEIGIVGFGDLGKA 190
Query: 192 LAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD 251
           L + L  F  +I      W   S +         +NG+      E    ED+    +K+D
Sbjct: 191 LRRVLSGFRARIRVFD-PWLPRSXLE--------ENGV------EPASLEDVL---TKSD 232
Query: 252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV 311
            +    ++  +    +     SS ++G+  + ++R  ++D++A+   +  GH+     DV
Sbjct: 233 FIFVVAAVTSENKRFLGAEAFSSXRRGAAFILLSRADVVDFDALXAAVSSGHIVAAS-DV 291
Query: 312 AWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQ 356
              EP   + P+   K  + + H  G  + ++    K  GD  L+
Sbjct: 292 YPEEPLPLDHPVRSLKGFIRSAHRAGALDSAF----KKXGDXVLE 332

>pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate Dehydrogenase Complexed With Nad Length = 380

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 59/107 (55%), Gaps = 7/107 (6%)
Query: 248 SKADVVVCCLSLNKQ----TAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGH 303
           ++ADV+     LN+     T  ++++  L++++ G+ LVN +RG ++D +A+   LE G 
Sbjct: 166 AEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGA 225
Query: 304 LGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVT-EHSYRSMAKV 349
              + +DV   EP    DP L  + ++ TPH+ G + E   R  A++
Sbjct: 226 DLEVALDVWEGEP--QADPELAARCLIATPHIAGYSLEGKLRGTAQI 270

>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From Pyrobaculum Aerophilum Length = 303

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 62/162 (38%), Gaps = 23/162 (14%)
Query: 177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE 236
           G+ V +LG G IG  + K L   G ++    R+         +       N + + L   
Sbjct: 124 GEKVAVLGLGEIGTRVGKILAALGAQVRGFSRT--------PKEGPWRFTNSLEEAL--- 172
Query: 237 KGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIA 296
                       +A   VC L LNK T G+V    L+   + ++ VN+ R  +LD + + 
Sbjct: 173 -----------REARAAVCALPLNKHTRGLVKYQHLALXAEDAVFVNVGRAEVLDRDGVL 221
Query: 297 HYLECGHLGGLGIDVAW-TEPFDPNDPILKFKNVLITPHVGG 337
             L+         DV W    F  +       NV+ TP V G
Sbjct: 222 RILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAG 263

>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad Length = 381

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 76/172 (44%), Gaps = 27/172 (15%)
Query: 172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIID 231
           G +L  +T+ I+G GN+G  L  RL   G++ +      A+                   
Sbjct: 114 GFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARG----------------- 156
Query: 232 DLVDEKGCHEDIFEFASKADVVVCCLSLNK----QTAGIVNKSFLSSMKKGSLLVNIARG 287
               ++G    + E   +ADV+     L K    +T  + +++ +  +K G++L+N  RG
Sbjct: 157 ----DEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRG 212
Query: 288 GLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVT 339
            ++D  A+   L  G    + +DV   EP D N  +L+  ++  T H+ G T
Sbjct: 213 PVVDNAALLARLNAGQPLSVVLDVWEGEP-DLNVALLEAVDI-GTSHIAGYT 262

>pdb|3GVX|A Chain A, Crystal Structure Of Glycerate Dehydrogenase Related Protein From Thermoplasma Acidophilum Length = 290

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 112/268 (41%), Gaps = 55/268 (20%)
Query: 100 QMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVT--GNAA----SCAELTIYLMLGLLR 153
           + K I     G++ +D+N           IP +V    NA     S AE    L+L   +
Sbjct: 49  RTKXIQAISAGVDHIDVNG----------IPENVVLCSNAGAYSISVAEHAFALLLAHAK 98
Query: 154 KQNEMRMAIEQKKLGV----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 209
              E     E  K G+    PT   L GK + ILG+G IG  +A   + FG ++IA  RS
Sbjct: 99  NILENN---ELXKAGIFRQSPT-TLLYGKALGILGYGGIGRRVAHLAKAFGXRVIAYTRS 154
Query: 210 WASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNK 269
                         +V   +  D++ E     D+F    ++D V+  + L  +T G VN 
Sbjct: 155 --------------SVDQNV--DVISESPA--DLFR---QSDFVLIAIPLTDKTRGXVNS 193
Query: 270 SFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNV 329
             L++ +K   +VN+AR  ++       +L+         DV W EP          +N 
Sbjct: 194 RLLANARKNLTIVNVARADVVSKPDXIGFLKERSDVWYLSDVWWNEPEITE---TNLRNA 250
Query: 330 LITPHVGGVTEHSYRSMAKVVGDVALQL 357
           +++PHV G         +  + D+A+QL
Sbjct: 251 ILSPHVAG-------GXSGEIXDIAIQL 271

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	370
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	2e-64
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	4e-61
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	3e-60
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	3e-59
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	5e-59
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	2e-55
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	3e-55
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	6e-55
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	6e-55
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	4e-54
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	1e-53
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	3e-53
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	5e-53
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	6e-53
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	1e-52
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	2e-52
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	2e-52
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	6e-52
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	8e-52
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	1e-51
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	3e-51
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	4e-51
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	1e-50
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	3e-50
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	7e-50
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	1e-49
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	7e-49
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	1e-48
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	2e-48
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	2e-48
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	3e-43
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	5e-42
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	3e-19
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	5e-08
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	2e-05
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	3e-05
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	5e-05
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	1e-04
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	4e-04
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	4e-04
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	5e-04
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	5e-04
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	5e-04
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	8e-04
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	9e-04
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	9e-04

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324

 Score =  207 bits (528), Expect = 2e-64
 Identities = 67/330 (20%), Positives = 119/330 (36%), Gaps = 28/330 (8%)

Query: 37  TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCIS 96
           + VL      P      +    ++       V  +D   +             L +    
Sbjct: 2   SLVLMAQATKPEQLQQLQTTYPDWTFKDAAAVTAADYDQIEV----MYGNHPLLKTILAR 57

Query: 97  RANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQN 156
             NQ+K +     G++ + + A    G+ VA   G    +A + +E  +  ML ++R  +
Sbjct: 58  PTNQLKFVQVISAGVDYLPLKALQAAGVVVANTSG---IHADAISESVLAAMLSVVRGYH 114

Query: 157 EMRMAIEQKKLGVP--TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHS 214
              +     +      T  TL G+ + I G G IG  LA +    G+ +I    +     
Sbjct: 115 AAWLNQRGARQWALPMTTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTT----- 169

Query: 215 QVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSS 274
                        G   D   E        +  + A+ +V  L L   T  + +      
Sbjct: 170 -------------GHPADHFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQ 216

Query: 275 MKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPH 334
            K+  +L+NI RG  +D  A+   L+   L    +DV   EP   + P+ +  +VLITPH
Sbjct: 217 TKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPH 276

Query: 335 VGGVTEHSYRSMAKVVGD-VALQLHAGTPL 363
           + G   H   ++  +     A  +  GT +
Sbjct: 277 ISGQIAHFRATVFPIFAANFAQFVKDGTLV 306

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Length = 303

 Score =  197 bits (503), Expect = 4e-61
 Identities = 62/297 (20%), Positives = 112/297 (37%), Gaps = 37/297 (12%)

Query: 66  DVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIK 125
            +V   D+ +V A          R+ +  +++  ++K I     GL+ +   +     + 
Sbjct: 22  KIVRGGDLGNVEA------ALVSRITAEELAKMPRLKFIQVVTAGLDHLPWESIPP-HVT 74

Query: 126 VARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQK--KLGVPTGETLLGKTVFIL 183
           VA   G    NA + AE  + L+L   ++  +    +++      V     + G+ V +L
Sbjct: 75  VAGNAG---SNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVEIPL-IQGEKVAVL 130

Query: 184 GFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDI 243
           G G IG  + K L   G ++    R+          S         +++           
Sbjct: 131 GLGEIGTRVGKILAALGAQVRGFSRTPKEGPWRFTNS---------LEEA---------- 171

Query: 244 FEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGH 303
                +A   VC L LNK T G+V    L+ M + ++ VN+ R  +LD + +   L+   
Sbjct: 172 ---LREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERP 228

Query: 304 LGGLGIDVAW-TEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHA 359
                 DV W    F  +       NV+ TP V G    + R   ++V +    L  
Sbjct: 229 QFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGGY-GNERVWRQMVMEAVRNLIT 284

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Length = 351

 Score =  197 bits (502), Expect = 3e-60
 Identities = 82/302 (27%), Positives = 131/302 (43%), Gaps = 35/302 (11%)

Query: 63  IQVDVVPISDVPD-----VIANYHLCVVKTM---RLDSNCISRANQMKLIMQFGVGLEGV 114
            Q  V    + PD      I + H+ +        + +  I +A  +KL++  G+G + +
Sbjct: 41  HQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSDHI 100

Query: 115 DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQ----KKLGVP 170
           D+ AA   G+ VA + G    N  S AE  +  +L L+R        + +          
Sbjct: 101 DLQAAAAAGLTVAEVTG---SNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAY 157

Query: 171 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGII 230
               L GKT+  +G G IG  L +RL+PFG  ++   R   +                  
Sbjct: 158 RAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMA------------------ 199

Query: 231 DDLVDEKGC--HEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 288
            +L  E G    ED+ E   K DV+V  + L ++T G+ NK  +  +KKG L+VN ARG 
Sbjct: 200 PELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGA 259

Query: 289 LLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAK 348
           +++ +A+   +E GH+GG   DV   +P   + P     N  +TPH  G T  +    A 
Sbjct: 260 IMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLRYAA 319

Query: 349 VV 350
             
Sbjct: 320 GT 321

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Length = 393

 Score =  195 bits (498), Expect = 3e-59
 Identities = 71/302 (23%), Positives = 116/302 (38%), Gaps = 35/302 (11%)

Query: 63  IQVDVVPISDVPD-----VIANYHLCVVKTM---RLDSNCISRANQMKLIMQFGVGLEGV 114
             + V    D PD      + +  + + +      L    I++A  +KL +  G+G + V
Sbjct: 68  HTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHV 127

Query: 115 DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQ----KKLGVP 170
           D+ +A    + VA +      N+ S AE  + ++L L+R          +        V 
Sbjct: 128 DLQSAIDRNVTVAEVTY---CNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVS 184

Query: 171 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGII 230
               L    V  +  G IG+ + +RL PF V +  T R                      
Sbjct: 185 HAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLP------------------ 226

Query: 231 DDLVDEKGC--HEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 288
           + +  E     H    +     DVV     L+ +T  ++N   L   K+G+ +VN ARG 
Sbjct: 227 ESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGK 286

Query: 289 LLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAK 348
           L D +A+A  LE G L G   DV + +P   + P        +TPH+ G T  +    A 
Sbjct: 287 LCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAA 346

Query: 349 VV 350
             
Sbjct: 347 GT 348

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} Length = 352

 Score =  193 bits (493), Expect = 5e-59
 Identities = 79/328 (24%), Positives = 135/328 (41%), Gaps = 44/328 (13%)

Query: 57  LQNYPSIQVDVVPISDVPDV---IANYH-LCVV--KTMRLDSNCISRANQMKLIMQFGV- 109
           L     ++V    +  V  +   +A+   L ++  +T R+    + R  ++K+I Q G  
Sbjct: 23  LLQDHEVKVFNNTVKGVGQLAARVADVEALVLIRERT-RVTRQLLDRLPKLKIISQTGRV 81

Query: 110 ---GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK----QNEMR--- 159
                  +D+ A T  G+ V    G    +  + AELT  L++   R+       ++   
Sbjct: 82  SRDAGGHIDLEACTDKGVVVLEGKG----SPVAPAELTWALVMAAQRRIPQYVASLKHGA 137

Query: 160 -----MAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHS 214
                +           G  L G+T+ I G+G IG  +A   R FG+ ++     W    
Sbjct: 138 WQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLV----WGRE- 192

Query: 215 QVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSS 274
                S   A  +G    + + K   + +FE   ++DV+   L LN +T  I+  + L+ 
Sbjct: 193 ----NSKERARADGF--AVAESK---DALFE---QSDVLSVHLRLNDETRSIITVADLTR 240

Query: 275 MKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPH 334
           MK  +L VN +R  L++   +   L  G  G   IDV  TEP      +L+ +N + TPH
Sbjct: 241 MKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPH 300

Query: 335 VGGVTEHSYRSMAKVVGDVALQLHAGTP 362
           +G V   SY     +     L +  G  
Sbjct: 301 IGYVERESYEMYFGIAFQNILDILQGNV 328

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Length = 364

 Score =  184 bits (470), Expect = 2e-55
 Identities = 77/307 (25%), Positives = 123/307 (40%), Gaps = 37/307 (12%)

Query: 63  IQVDVVPISDVPD-----VIANYHLCVVKTM---RLDSNCISRANQMKLIMQFGVGLEGV 114
            ++      +  +      I +  + +        +    I +A ++KL++  GVG + +
Sbjct: 39  HELITTSDKEGGNSVLDQHIPDADIIITTPFHPAYITKERIDKAKKLKLVVVAGVGSDHI 98

Query: 115 DINAATRCG--IKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQ----KKLG 168
           D++   + G  I V  + G    N  S AE  +  ML L+R        I          
Sbjct: 99  DLDYINQTGKKISVLEVTG---SNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAI 155

Query: 169 VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNG 228
                 + GKT+  +G G IG  + +RL PF  K +        +            K G
Sbjct: 156 AKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELL-------YYDYQALPKDAEEKVG 208

Query: 229 IIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 288
                   +   E+I E  ++AD+V     L+  T G++NK  LS  KKG+ LVN ARG 
Sbjct: 209 A------RR--VENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGA 260

Query: 289 LLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL-----ITPHVGGVTEHSY 343
           +   E +A  LE G L G G DV + +P   + P    +N       +TPH  G T  + 
Sbjct: 261 ICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTTLDAQ 320

Query: 344 RSMAKVV 350
              A+  
Sbjct: 321 TRYAQGT 327

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Length = 347

 Score =  183 bits (468), Expect = 3e-55
 Identities = 70/323 (21%), Positives = 133/323 (41%), Gaps = 36/323 (11%)

Query: 64  QVDVVPISDVPD----VIANYH-LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINA 118
            V         +    V+       +  T+ L    + +   +++I++ G G + +DI +
Sbjct: 44  TVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKS 103

Query: 119 ATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR---------KQNEMRMAIEQKKLGV 169
           A   GI V  +P     +    A+ T+  +L L R         ++     ++EQ +   
Sbjct: 104 AGDLGIAVCNVPA---ASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVA 160

Query: 170 PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGI 229
                + G+T+ I+G G +G  +A R + FG  ++               S  +    G+
Sbjct: 161 SGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPY---------LSDGVERALGL 211

Query: 230 IDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL 289
               V        + +    +D V     LN+    ++N   +  M++G+ LVN ARGGL
Sbjct: 212 --QRV------STLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGL 263

Query: 290 LDYEAIAHYLECGHLGGLGIDVAWTEPFDPND-PILKFKNVLITPHVGGVTEHSYRSMA- 347
           +D +A+A  L+ G + G  +DV  +EPF  +  P+    N++ TPH    +E +   M  
Sbjct: 264 VDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMRE 323

Query: 348 KVVGDVALQLHAGTPLTGLEFVN 370
           +   ++   +    P +    VN
Sbjct: 324 EAAREIRRAITGRIPDSLKNCVN 346

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} Length = 307

 Score =  181 bits (463), Expect = 6e-55
 Identities = 85/322 (26%), Positives = 149/322 (46%), Gaps = 38/322 (11%)

Query: 38  RVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISD---VPDVIANYHLCVVKTM-RLDSN 93
           +VL   P          + L++   ++V      D   + +++ +    +V++  ++   
Sbjct: 5   KVLVAAPLHEK----AIQVLKD-AGLEVIYEEYPDEDRLVELVKDVEAIIVRSKPKVTRR 59

Query: 94  CISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR 153
            I  A ++K+I + GVGL+ +D+ AA   GI+V   P     ++ S AEL + LM  + R
Sbjct: 60  VIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPA---ASSRSVAELAVGLMFSVAR 116

Query: 154 KQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR 208
           K       +      +K+     G  L GKT+ I+GFG IG ++AK     G+ I+    
Sbjct: 117 KIAFADRKMREGVWAKKEA---MGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDP 173

Query: 209 SWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVN 268
                      +   A +       VD     E + +   ++DVV   + L + T  ++N
Sbjct: 174 Y---------PNEERAKEVNG--KFVD----LETLLK---ESDVVTIHVPLVESTYHLIN 215

Query: 269 KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKN 328
           +  L  MKK ++L+N +RG ++D  A+   L+ G + G G+DV   EP   + P+ KF N
Sbjct: 216 EERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDN 275

Query: 329 VLITPHVGGVTEHSYRSMAKVV 350
           V++TPH+G  T  +       V
Sbjct: 276 VVLTPHIGASTVEAQERAGVEV 297

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Length = 290

 Score =  181 bits (461), Expect = 6e-55
 Identities = 60/302 (19%), Positives = 111/302 (36%), Gaps = 36/302 (11%)

Query: 60  YPSIQVDVVPISDVPDVIANYHLCVVKTM-----RLDSNCISRANQMKLIMQFGVGLEGV 114
           Y +   D         V+  + L           ++  +      + K+I     G++ +
Sbjct: 4   YVNFPADGHVREIAKTVLDGFDLHWYPDYYDAEAQVIKDRYVLGKRTKMIQAISAGVDHI 63

Query: 115 DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGET 174
           D+N      +  +         + S AE    L+L   +   E    ++           
Sbjct: 64  DVNGIPENVVLCSNAGA----YSISVAEHAFALLLAHAKNILENNELMKAGIFRQSPTTL 119

Query: 175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV 234
           L GK + ILG+G IG  +A   + FG+++IA  RS             + V +    DL 
Sbjct: 120 LYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQ--------NVDVISESPADLF 171

Query: 235 DEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEA 294
                         ++D V+  + L  +T G+VN   L++ +K   +VN+AR  ++    
Sbjct: 172 -------------RQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPD 218

Query: 295 IAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVA 354
           +  +L+         DV W EP          +N +++PHV G        +A     +A
Sbjct: 219 MIGFLKERSDVWYLSDVWWNEPEITETN---LRNAILSPHVAGGMSGEIMDIA---IQLA 272

Query: 355 LQ 356
            +
Sbjct: 273 FE 274

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334

 Score =  180 bits (459), Expect = 4e-54
 Identities = 72/288 (25%), Positives = 133/288 (46%), Gaps = 32/288 (11%)

Query: 75  DVIANYH-LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDV 133
             +     L  + + R+D      A +++++  + VG + +DI  AT+ GI V   P  +
Sbjct: 41  KKVKEVDALVTMLSERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVL 100

Query: 134 TGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPT---------GETLLGKTVFILG 184
           T    + A+L   L+L   R   +    +   +              G  + GKT+ I+G
Sbjct: 101 T---DATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIG 157

Query: 185 FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIF 244
            G IG  +AKR + F ++I+   R+         +   +  +              + + 
Sbjct: 158 LGRIGQAIAKRAKGFNMRILYYSRT---------RKEEVERELNAE---------FKPLE 199

Query: 245 EFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHL 304
           +   ++D VV  + L ++T  ++N+  L  MKK ++L+NIARG ++D  A+   L+ G +
Sbjct: 200 DLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWI 259

Query: 305 GGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGD 352
            G G+DV   EP   N+ + K  NV++TPH+G  +  +   MA++V  
Sbjct: 260 AGAGLDVFEEEP-YYNEELFKLDNVVLTPHIGSASFGAREGMAELVAK 306

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} Length = 311

 Score =  178 bits (455), Expect = 1e-53
 Identities = 85/284 (29%), Positives = 134/284 (47%), Gaps = 33/284 (11%)

Query: 75  DVIANYH-LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDV 133
             +     L      R+D+  + RA  +K+I  + VG++ VD+ AA   GI+V   PG +
Sbjct: 39  KRVEGAVGLIPTVEDRIDAEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVL 98

Query: 134 TGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG--VPT---GETLLGKTVFILGFGNI 188
           T    + A+LT+ L+L + R+  E              P    G  L G T+ ++G G I
Sbjct: 99  T---EATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRI 155

Query: 189 GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS 248
           G  +AKR   FG++++   R+             L      +++L+ E            
Sbjct: 156 GQAVAKRALAFGMRVVYHART----------PKPLPYPFLSLEELLKE------------ 193

Query: 249 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLG 308
            ADVV     L  +T  ++N+  L +MK+G++L+N ARG L+D EA+   L  GHL G G
Sbjct: 194 -ADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEALR-GHLFGAG 251

Query: 309 IDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGD 352
           +DV   EP  P  P+    N +ITPH+G     +   MA+V  +
Sbjct: 252 LDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAVE 295

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Length = 313

 Score =  176 bits (450), Expect = 5e-53
 Identities = 82/335 (24%), Positives = 147/335 (43%), Gaps = 45/335 (13%)

Query: 34  KNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV---VPISDVPDVIANYHLCVV--KTM 88
               + L   P          + L+    IQVD    +   ++ ++I NY + VV  +T 
Sbjct: 3   IYTVKALITDP----IDEILIKTLRE-KGIQVDYMPEISKEELLNIIGNYDIIVVRSRT- 56

Query: 89  RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM 148
           ++  + I +  ++K+I + G+GL+ +D   A +  IKV   PG    +  S  ELTI LM
Sbjct: 57  KVTKDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPG---ASTDSAVELTIGLM 113

Query: 149 LGLLRK----QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 204
           +   RK        +  I +K  G+   E L GKT+ I+GFG IG ++       G+K++
Sbjct: 114 IAAARKMYTSMALAKSGIFKKIEGL---E-LAGKTIGIVGFGRIGTKVGIIANAMGMKVL 169

Query: 205 ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTA 264
           A                  A K       V      E++      +DV+   ++++K   
Sbjct: 170 AYDIL---------DIREKAEKINA--KAVS----LEELL---KNSDVISLHVTVSKDAK 211

Query: 265 GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEP--FDPNDP 322
            I++      MK   ++VN +R   ++ +A+  Y++ G +     DV W EP   +    
Sbjct: 212 PIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELE 271

Query: 323 ILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQL 357
           +LK + V++T H+G  T+ + + +A+        L
Sbjct: 272 LLKHERVIVTTHIGAQTKEAQKRVAE---MTTQNL 303

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320

 Score =  176 bits (450), Expect = 6e-53
 Identities = 79/285 (27%), Positives = 121/285 (42%), Gaps = 27/285 (9%)

Query: 75  DVIANYH-LCVVKTMRLDSNCISRAN-QMKLIMQFGVGLEGVDINAATRCGIKVARIPGD 132
           +   +   L +    +     I R    +K I  + +G + +D++A    GIKV   P  
Sbjct: 40  ETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHG 99

Query: 133 VTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG--VPT---GETLLGKTVFILGFGN 187
           VT    + AE+ + L+LG  R+  E    I  +      P    GE L  KT+ I GFG+
Sbjct: 100 VT---VATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGS 156

Query: 188 IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA 247
           IG  LAKR + F + I       AS S    ++S  A  +  +D L+             
Sbjct: 157 IGQALAKRAQGFDMDIDYFDTHRASSSD---EASYQATFHDSLDSLL------------- 200

Query: 248 SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGL 307
           S +           +T    NK+ + S+ +G+++VN ARG L+D E +   LE G L   
Sbjct: 201 SVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYA 260

Query: 308 GIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGD 352
           G DV   EP + N+      N  + PH+G     +   MA    D
Sbjct: 261 GFDVFAGEP-NINEGYYDLPNTFLFPHIGSAATQAREDMAHQAND 304

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348

 Score =  177 bits (450), Expect = 1e-52
 Identities = 65/308 (21%), Positives = 129/308 (41%), Gaps = 36/308 (11%)

Query: 70  ISDVPDVIANYHLCVVKTMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVAR 128
             D   +I        ++   +++ IS   + +K+    G G + +D++A    G+  A 
Sbjct: 49  YGDFEAIIKLAVENGTESYPWNADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFAN 108

Query: 129 IPGDVTGNAASCAELTIYLMLGLLRKQNE-MRMAIEQK--------KLGVPTGETLLGKT 179
             G       + ++L +YL+L + R  +   R A                 +     G  
Sbjct: 109 SRGAGD---TATSDLALYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHV 165

Query: 180 VFILGFGNIGVELAKR-LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG 238
           +  +G G I  E+A++ +   G+K++    + A                    +     G
Sbjct: 166 LGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPAD------------------AETEKALG 207

Query: 239 C--HEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIA 296
               + + E A ++D V   +   K T  +++++F ++MK GS +VN ARG ++  +A+ 
Sbjct: 208 AERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALI 267

Query: 297 HYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGD-VAL 355
             L+ G L   G+DV   EP   +  +++ K+V +T H+GGV   ++    ++    +  
Sbjct: 268 AALKSGKLLSAGLDVHEFEP-QVSKELIEMKHVTLTTHIGGVAIETFHEFERLTMTNIDR 326

Query: 356 QLHAGTPL 363
            L  G PL
Sbjct: 327 FLLQGKPL 334

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Length = 330

 Score =  176 bits (448), Expect = 2e-52
 Identities = 78/312 (25%), Positives = 136/312 (43%), Gaps = 35/312 (11%)

Query: 55  EYLQNYPSIQVDVVPISDVP-------DVIANYH-LCVVKTMRLDSNCISRAN-QMKLIM 105
             L      +V+    SD P         +A  H L  + +  +D   +  A   +K+I 
Sbjct: 23  VALARAADCEVEQWD-SDEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVIS 81

Query: 106 QFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQK 165
              VG++ + ++   + GI+V   P  +T    + AEL + L+L   R+  E    ++  
Sbjct: 82  TMSVGIDHLALDEIKKRGIRVGYTPDVLT---DTTAELAVSLLLTTCRRLPEAIEEVKNG 138

Query: 166 KLG--VPT---GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQS 220
                 P    G  L   TV I+G G IG  +A+RL+PFGV+       +        ++
Sbjct: 139 GWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFL----YTGRQPRPEEA 194

Query: 221 SALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSL 280
           +    +                  E A+++D +V   SL   T G+ NK F   MK+ ++
Sbjct: 195 AEFQAE-------------FVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAV 241

Query: 281 LVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTE 340
            +NI+RG +++ + +   L  G +   G+DV   EP   N P+L  KN +I PH+G  T 
Sbjct: 242 FINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATH 301

Query: 341 HSYRSMAKVVGD 352
            +  +M+ +  +
Sbjct: 302 RTRNTMSLLAAN 313

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} Length = 335

 Score =  176 bits (448), Expect = 2e-52
 Identities = 89/342 (26%), Positives = 160/342 (46%), Gaps = 39/342 (11%)

Query: 34  KNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVP---ISDVPDVIANYHLCVVKTM-R 89
            N+ +VL             ++ LQ+   +QV         ++   + +    +V++  +
Sbjct: 24  ANLRKVLISDS----LDPCCRKILQD-GGLQVVEKQNLSKEELIAELQDCEGLIVRSATK 78

Query: 90  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 149
           + ++ I+ A +++++ + G G++ VD+ AATR GI V   P    GN+ S AELT  +++
Sbjct: 79  VTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPN---GNSLSAAELTCGMIM 135

Query: 150 GLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 204
            L R+  +   ++     E+KK     G  L GKT+ ILG G IG E+A R++ FG+K I
Sbjct: 136 CLARQIPQATASMKDGKWERKKF---MGTELNGKTLGILGLGRIGREVATRMQSFGMKTI 192

Query: 205 ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTA 264
                          S  ++   G+    +      E+I+      D +     L   T 
Sbjct: 193 GYDPI---------ISPEVSASFGV--QQLP----LEEIW---PLCDFITVHTPLLPSTT 234

Query: 265 GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPIL 324
           G++N +  +  KKG  +VN ARGG++D  A+   L+ G   G  +DV   EP   +  ++
Sbjct: 235 GLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-PRDRALV 293

Query: 325 KFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL 366
             +NV+  PH+G  T+ +     + +    + +  G  LTG+
Sbjct: 294 DHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGKSLTGV 335

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Length = 340

 Score =  175 bits (445), Expect = 6e-52
 Identities = 74/281 (26%), Positives = 119/281 (42%), Gaps = 29/281 (10%)

Query: 87  TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIY 146
              L +  + +   + +I   GVG + VD+  A R  I V   PG +       A+L I 
Sbjct: 80  GAGLSNEWMEKLPSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLA---DDVADLGIA 136

Query: 147 LMLGLLRKQNE----MRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVK 202
           LML +LR+  +    +R         +P G +  GK + +LG G IG  LA R   FG+ 
Sbjct: 137 LMLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGMS 196

Query: 203 IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQ 262
           +    RS  S                       +   H+   + A  +DV+  C++ +  
Sbjct: 197 VRYWNRSTLSGV---------------------DWIAHQSPVDLARDSDVLAVCVAASAA 235

Query: 263 TAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDP 322
           T  IV+ S L ++    ++VN+ARG ++D +A+   L+ G + G G+DV   EP      
Sbjct: 236 TQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEP-AIRSE 294

Query: 323 ILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPL 363
                N ++ PH G  T  +  +M K+V        AG   
Sbjct: 295 FHTTPNTVLMPHQGSATVETRMAMGKLVLANLAAHFAGEKA 335

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} Length = 333

 Score =  174 bits (444), Expect = 8e-52
 Identities = 78/300 (26%), Positives = 136/300 (45%), Gaps = 32/300 (10%)

Query: 75  DVIANYH-LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDV 133
            VI  +  + V  T ++    +  A ++K+I     G + +D+  AT+ GI V ++ G  
Sbjct: 38  GVIGRFDGIIVSPTTKITREVLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSG-- 95

Query: 134 TGNAASCAELTIYLMLGLLRKQNEMRMAIEQKK--------LGVPTGETLLGKTVFILGF 185
              + + AE T+ L++ L+RK +     I + +         G    E+L GK V ILG 
Sbjct: 96  -LLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGM 154

Query: 186 GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFE 245
           G IG  +A+RL PFGVK+    R          +   +  +       +D     +++ E
Sbjct: 155 GAIGKAIARRLIPFGVKLYYWSRH---------RKVNVEKELKA--RYMD----IDELLE 199

Query: 246 FASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG 305
              K+D+V+  L L + T  I+N+  +  ++ G  LVNI RG L+D +A+   ++ G L 
Sbjct: 200 ---KSDIVILALPLTRDTYHIINEERVKKLE-GKYLVNIGRGALVDEKAVTEAIKQGKLK 255

Query: 306 GLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMA-KVVGDVALQLHAGTPLT 364
           G   DV   EP   ++        ++TPH  G+   +   +  + V ++   L    P  
Sbjct: 256 GYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQEDVGFRAVENLLKVLRGEVPED 315

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} Length = 345

 Score =  174 bits (444), Expect = 1e-51
 Identities = 67/277 (24%), Positives = 120/277 (43%), Gaps = 28/277 (10%)

Query: 82  LCVVKTMRLDSNCISRAN-QMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASC 140
           L V  T  + +  I +    +K I    VG + +D+ AA   GIKV   P  ++    +C
Sbjct: 75  LFVTATEAITAEVIRKLQPGLKTIATLSVGYDHIDMAAARSLGIKVLHTPDVLS---DAC 131

Query: 141 AELTIYLMLGLLRKQNEMRMAIEQK--KLGVPT---GETLLGKTVFILGFGNIGVELAKR 195
           AE+ + L+L   R+  E    +         PT   G  L G+ + I G G IG  +A R
Sbjct: 132 AEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATR 191

Query: 196 LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 255
            R FG+ I    R+     ++S      A+              H+ +      +D+ + 
Sbjct: 192 ARGFGLAIHYHNRT-----RLSHALEEGAIY-------------HDTLDSLLGASDIFLI 233

Query: 256 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE 315
                 +  G ++   ++ + +G++++NI+RG L++ +A+   L   HL   G+DV   E
Sbjct: 234 AAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANE 293

Query: 316 PFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGD 352
           P   +       N+ +TPH+G  T  +  +M  ++  
Sbjct: 294 P-AIDPRYRSLDNIFLTPHIGSATHETRDAMGWLLIQ 329

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* Length = 330

 Score =  173 bits (440), Expect = 3e-51
 Identities = 67/288 (23%), Positives = 110/288 (38%), Gaps = 32/288 (11%)

Query: 77  IANYH-LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTG 135
             +   +      R+D++ +    ++++I     G +  D++A T  G+ +  +P     
Sbjct: 43  CRDAQAMMAFMPDRVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPD---L 99

Query: 136 NAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PT--GETLLGKTVFILGFGNIGVE 191
                AEL I L +GL R        +   K     P   G  L   TV  LG G IG+ 
Sbjct: 100 LTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLA 159

Query: 192 LAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD 251
           +A RL+ +G  +   +               L ++     +L                +D
Sbjct: 160 MADRLQGWGATLQYHEAKALDTQT----EQRLGLRQVACSELFAS-------------SD 202

Query: 252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV 311
            ++  L LN  T  +VN   L+ ++ G+LLVN  RG ++D  A+   LE G LGG   DV
Sbjct: 203 FILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADV 262

Query: 312 -------AWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGD 352
                      P   +  +L   N L TPH+G         + +    
Sbjct: 263 FEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQ 310

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333

 Score =  172 bits (439), Expect = 4e-51
 Identities = 73/280 (26%), Positives = 120/280 (42%), Gaps = 28/280 (10%)

Query: 87  TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIY 146
               D+  I    +++++  F VGL+ VD+      G++V   P  +T      A+L I 
Sbjct: 74  NAGADAELIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLT---DDVADLAIG 130

Query: 147 LMLGLLRKQNEMRMAIEQ---KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKI 203
           L+L +LR+  E    + +   K           GK V I+G G IG+ +A+R   F   I
Sbjct: 131 LILAVLRRICECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPI 190

Query: 204 IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQT 263
               RS                              +  + E AS +D++V    L  +T
Sbjct: 191 SYFSRS--KKPNT-------------------NYTYYGSVVELASNSDILVVACPLTPET 229

Query: 264 AGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPI 323
             I+N+  + ++    +L+NI RG  +D   +   L  G LGG G+DV   EP +  + +
Sbjct: 230 THIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREP-EVPEKL 288

Query: 324 LKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPL 363
              +NV++ PHVG  T  + + MA +V        +G PL
Sbjct: 289 FGLENVVLLPHVGSGTVETRKVMADLVVGNLEAHFSGKPL 328

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Length = 529

 Score =  176 bits (448), Expect = 1e-50
 Identities = 84/306 (27%), Positives = 148/306 (48%), Gaps = 37/306 (12%)

Query: 61  PSIQVDVVP---ISDVPDVIANYHLCVVKTM-RLDSNCISRANQMKLIMQFGVGLEGVDI 116
             ++V  V       +   +      +V++   +D+  ++ A ++K++ + GVGL+ VD+
Sbjct: 23  DQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDV 82

Query: 117 NAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPT 171
           +AAT  G+ V   P     N  S AE  + L+L   R+      ++     ++      +
Sbjct: 83  DAATARGVLVVNAPT---SNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSF---S 136

Query: 172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIID 231
           G  + GKTV ++G G IG  +A+R+  FG  ++A              S A A + GI  
Sbjct: 137 GTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPY---------VSPARAAQLGI-- 185

Query: 232 DLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLD 291
           +L+      +D+    ++AD +   L    +TAG+++K  L+  K G ++VN ARGGL+D
Sbjct: 186 ELLS----LDDLL---ARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVD 238

Query: 292 YEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVG 351
             A+A  +  GH+   G+DV  TEP   + P+ +   V++TPH+G  T  +         
Sbjct: 239 EAALADAITGGHVRAAGLDVFATEP-CTDSPLFELAQVVVTPHLGASTAEAQDRAGT--- 294

Query: 352 DVALQL 357
           DVA  +
Sbjct: 295 DVAESV 300

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Length = 404

 Score =  172 bits (438), Expect = 3e-50
 Identities = 83/305 (27%), Positives = 130/305 (42%), Gaps = 50/305 (16%)

Query: 55  EYLQNYPSIQVDVVPISDVPD----VIANYHLCVV--KTMRLDSNCISRANQMKLIMQFG 108
           E L+      ++    +   +     I + H   +  +T  L  + I+ A ++  I  F 
Sbjct: 19  ESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTH-LTEDVINAAEKLVAIGAFA 77

Query: 109 VGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR----KQNEMRMAI-E 163
           +G   VD++AA + GI V   P     N  S AEL I  +L LLR       +    +  
Sbjct: 78  IGTNQVDLDAAAKRGIPVFNAPF---SNTRSVAELVIGELLLLLRGVPEANAKAHRGVGN 134

Query: 164 QKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA----TKRSWASHSQVSCQ 219
           +   G        GK + I+G+G+IG +L       G+ +       K            
Sbjct: 135 KLAAG---SFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP---------- 181

Query: 220 SSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGS 279
               A +   + DL+             + +DVV   +  N  T  ++    +S MK GS
Sbjct: 182 -LGNATQVQHLSDLL-------------NMSDVVSLHVPENPSTKNMMGAKEISLMKPGS 227

Query: 280 LLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPND----PILKFKNVLITPHV 335
           LL+N +RG ++D  A+A  L   HL G  IDV  TEP   +D    P+ +F NVL+TPH+
Sbjct: 228 LLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHI 287

Query: 336 GGVTE 340
           GG T+
Sbjct: 288 GGSTQ 292

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Length = 333

 Score =  169 bits (430), Expect = 7e-50
 Identities = 62/333 (18%), Positives = 128/333 (38%), Gaps = 43/333 (12%)

Query: 52  YTKEYLQNYPSIQVDVVPISDVPDVIANYH----LCVVKTMRLDSNCISRANQM--KLIM 105
           + KE+   +  ++V+       P+ +A       + V + +   +  +          + 
Sbjct: 16  FLKEWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMS 75

Query: 106 QFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQK 165
              VG++ +D+  A   G ++  +P     +  + AE        +LR+   M   + + 
Sbjct: 76  LRNVGVDNIDMAKAKELGFQITNVPV---YSPNAIAEHAAIQAARILRQDKAMDEKVARH 132

Query: 166 KLGVP--TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSAL 223
            L      G  +  + V ++G G+IG    + +  FG K+I                   
Sbjct: 133 DLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDI--------------- 177

Query: 224 AVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVN 283
             +N  ++         +D+++   +ADV+   +        ++N   ++ MK+  ++VN
Sbjct: 178 -FRNPELEKKGYYVDSLDDLYK---QADVISLHVPDVPANVHMINDESIAKMKQDVVIVN 233

Query: 284 IARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPF-------------DPNDPILKFKNVL 330
           ++RG L+D +A+   L+ G + G  +DV   E                    ++   NVL
Sbjct: 234 VSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVL 293

Query: 331 ITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPL 363
           +TP     T H+ R+M     D  L+L  G   
Sbjct: 294 VTPKTAFYTTHAVRNMVVKAFDNNLELVEGKEA 326

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324

 Score =  168 bits (427), Expect = 1e-49
 Identities = 60/309 (19%), Positives = 122/309 (39%), Gaps = 24/309 (7%)

Query: 58  QNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDIN 117
            + P +++         + +      ++         +++AN++        G++ + ++
Sbjct: 25  AHLPHLRILRADNQSDAEKLIGEAHILMAEPARAKPLLAKANKLSWFQSTYAGVDVL-LD 83

Query: 118 AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLG 177
           A  R   ++  + G         +E     +L L+R+    R   +Q+       + L G
Sbjct: 84  ARCRRDYQLTNVRG---IFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQSHPYQGLKG 140

Query: 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK 237
           +T+ ILG G+IG  +A   + FG+K++   RS    +                       
Sbjct: 141 RTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFDQVYQL--------------- 185

Query: 238 GCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAH 297
                + +  ++ADV+V  L   ++T  +   S     K G++L N+ RG  ++   +  
Sbjct: 186 ---PALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLT 242

Query: 298 YLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQL 357
            L  G LG   +DV   EP   + P+    N++ITPH    +      +A++     ++ 
Sbjct: 243 ALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNSAYS--FPDDVAQIFVRNYIRF 300

Query: 358 HAGTPLTGL 366
             G PL G 
Sbjct: 301 IDGQPLDGK 309

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A Length = 315

 Score =  166 bits (422), Expect = 7e-49
 Identities = 69/332 (20%), Positives = 125/332 (37%), Gaps = 31/332 (9%)

Query: 38  RVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISR 97
            ++F  P F A+  +     +  P  +V    + D           +V    ++   +  
Sbjct: 5   EIIFYHPTFNAAW-WVNALEKALPHARVREWKVGDNNPA----DYALVWQPPVE---MLA 56

Query: 98  ANQMKLIMQFGVGLEGVDINAATRCGIKVARIPG---DVTGNAASCAELTIYLMLGLLRK 154
             ++K +   G G++ +         +  A IP    + TG      E  +  +L   R+
Sbjct: 57  GRRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRR 116

Query: 155 QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHS 214
            ++ +    Q         T    +V I+G G +G ++A+ L+ +G  +    RS  S  
Sbjct: 117 FDDYQALKNQALWKPLPEYTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWP 176

Query: 215 QVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSS 274
            V                        E++  F ++  V++  L    QT GI+N   L  
Sbjct: 177 GVESYVGR------------------EELRAFLNQTRVLINLLPNTAQTVGIINSELLDQ 218

Query: 275 MKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPH 334
           +  G+ ++N+ARG  +    +   L+ G L G  +DV   EP     P+ +   V +TPH
Sbjct: 219 LPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPH 278

Query: 335 VGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL 366
           +  VT          +     QL  G P+TG 
Sbjct: 279 IAAVT--RPAEAIDYISRTITQLEKGEPVTGQ 308

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Length = 331

 Score =  166 bits (422), Expect = 1e-48
 Identities = 73/349 (20%), Positives = 125/349 (35%), Gaps = 62/349 (17%)

Query: 49  SHNYTKEYLQNY-PSIQVDVVPISDVP------DVIANYH-LCVVKTMRLDSNCISRANQ 100
             +      +        D+  + D        ++ A +  + +      +   +    +
Sbjct: 8   VRDVELPIFEACNKEFGYDIKCVPDYLNTKETAEMAAGFDAVILRGNCFANKQNLDIYKK 67

Query: 101 M--KLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEM 158
           +  K I+    G + +D   A   G  +A +P     +  + AEL +   + LLR     
Sbjct: 68  LGVKYILTRTAGTDHIDKEYAKELGFPMAFVPR---YSPNAIAELAVTQAMMLLRHTAYT 124

Query: 159 RMAIEQKKL---GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQ 215
                +K          + +   TV ++G G IG   A+     G  +I           
Sbjct: 125 TSRTAKKNFKVDAFMFSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGE--------- 175

Query: 216 VSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS------KADVVVCCLSLNKQTAGIVNK 269
                           D+ + KG  ED     S      K+D++       K+   +V +
Sbjct: 176 ----------------DVFEIKGI-EDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTR 218

Query: 270 SFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEP---------FDPN 320
            FL  MK G++LVN ARG L+D EA+   +E G LGG G DV   E              
Sbjct: 219 DFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLE 278

Query: 321 DPILK-----FKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLT 364
           +P+ +     +  VLITPH+G  T+ + ++M +V       L       
Sbjct: 279 NPLFEKLVDLYPRVLITPHLGSYTDEAVKNMVEVSYQNLKDLAETGDCP 327

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Length = 416

 Score =  168 bits (427), Expect = 2e-48
 Identities = 81/301 (26%), Positives = 135/301 (44%), Gaps = 42/301 (13%)

Query: 55  EYLQNYPSIQVDVVPISDVPD----VIANYHLCVV--KTMRLDSNCISRANQMKLIMQFG 108
           EY ++     V  +P +         I++ H+  +  +T +L     + AN++  +  F 
Sbjct: 30  EYFKSSGYTNVTHLPKALDKADLIKAISSAHIIGIRSRT-QLTEEIFAAANRLIAVGCFS 88

Query: 109 VGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR----KQNEMRMAI-E 163
           VG   V++ AA + GI V   P     N  S AEL I  ++ L+R    +         E
Sbjct: 89  VGTNQVELKAARKRGIPVFNAPF---SNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWE 145

Query: 164 QKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSAL 223
           +  +G      + GKT+ I+G+GNIG ++       G+ +         +          
Sbjct: 146 KTAIG---SREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRY-------YDTSDKLQYGN 195

Query: 224 AVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVN 283
                 +D+L+               +DVV   +  +K T+ ++ ++ L  MKKG+ L+N
Sbjct: 196 VKPAASLDELL-------------KTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLIN 242

Query: 284 IARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPND----PILKFKNVLITPHVGGVT 339
            ARG  +D EA+A  L+ GHL G  IDV   EP    +    P+   +NV++TPH+GG T
Sbjct: 243 NARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGST 302

Query: 340 E 340
           E
Sbjct: 303 E 303

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Length = 333

 Score =  165 bits (420), Expect = 2e-48
 Identities = 66/341 (19%), Positives = 135/341 (39%), Gaps = 48/341 (14%)

Query: 49  SHNYTKEYLQNY---PSIQVDVVPISDVPD---VIANYH-LCVVKTMRLDSNCISR--AN 99
           +     +Y + +       ++        +       +  +  ++T    +    +  A 
Sbjct: 8   ARVDEIQYFKQWAKDTGNTLEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAY 67

Query: 100 QMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMR 159
            +K +    VG + +D+ A  + GI+++ +P     + A+ AE  +   L LLR   +++
Sbjct: 68  GIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPA---YSPAAIAEFALTDTLYLLRNMGKVQ 124

Query: 160 MAIEQKKL---GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQV 216
             ++       G   G+ L  +TV ++G G+IG    K  + FG K+IA       +   
Sbjct: 125 AQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIA-------YDPY 177

Query: 217 SCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMK 276
             +          ++DL               ++DV+   +   +Q   I+N++  + MK
Sbjct: 178 PMKGDHPDFDYVSLEDLF-------------KQSDVIDLHVPGIEQNTHIINEAAFNLMK 224

Query: 277 KGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEP-------------FDPNDPI 323
            G++++N AR  L+D +A+   L+ G L G+GID    E                  D +
Sbjct: 225 PGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDEL 284

Query: 324 LKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLT 364
           L   NV+++PH+   TE +  +M        +        +
Sbjct: 285 LGMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLTKGETS 325

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Length = 380

 Score =  153 bits (388), Expect = 3e-43
 Identities = 59/315 (18%), Positives = 123/315 (39%), Gaps = 56/315 (17%)

Query: 52  YTKEYLQNYPSIQVDVVP-ISDVPDVIANYHLCVVKTM-RLDSNCISRANQMKLIMQFGV 109
               +        +  +P  +     +A   + +V+++  +    ++  + ++ +    +
Sbjct: 11  VVDAFFA--DQGSIRRLPGRAIDRAALAEVDVLLVRSVTEVSRAALA-GSPVRFVGTCTI 67

Query: 110 GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV 169
           G + +D++     GI  +  PG    NA    +  +  +L +   +              
Sbjct: 68  GTDHLDLDYFAEAGIAWSSAPG---CNARGVVDYVLGCLLAMAEVR-------------- 110

Query: 170 PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGI 229
             G  L  +T  ++G G +G  L + LR  G K++             C     A +   
Sbjct: 111 --GADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLV------------CDPPRQAREPDG 156

Query: 230 IDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQ----TAGIVNKSFLSSMKKGSLLVNIA 285
             + V      E +     +ADV+     LN+     T  ++++  L++++ G+ LVN +
Sbjct: 157 --EFVS----LERLLA---EADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNAS 207

Query: 286 RGGLLDYEAIAHYLECGHLGGLGIDVAW-TEPFDPNDPILKFKNVLITPHVGGVTEHSYR 344
           RG ++D +A+   LE G    + +DV W  EP    DP L  + ++ TPH+ G   +S  
Sbjct: 208 RGAVVDNQALRRLLEGGADLEVALDV-WEGEP--QADPELAARCLIATPHIAG---YSLE 261

Query: 345 SMAKVVGDVALQLHA 359
              +    +     A
Sbjct: 262 GKLRGTAQIYQAYCA 276

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Length = 381

 Score =  150 bits (380), Expect = 5e-42
 Identities = 64/319 (20%), Positives = 124/319 (38%), Gaps = 69/319 (21%)

Query: 52  YTKEYLQNYPSIQVDVVPISDV-PDVIANYHLCVVKTM-RLDSNCISRANQMKLIMQFGV 109
           Y +E        +V  VP   +  + + +    +V+++ +++ + +S    +  +     
Sbjct: 14  YARELFSRLG--EVKAVPGRPIPVEELNHADALMVRSVTKVNESLLS-GTPINFVGTATA 70

Query: 110 GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV 169
           G + VD     + GI  +  PG    NA +  E     +L L  +               
Sbjct: 71  GTDHVDEAWLKQAGIGFSAAPG---CNAIAVVEYVFSALLMLAERD-------------- 113

Query: 170 PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSC----QSSALAV 225
             G +L  +T+ I+G GN+G  L  RL   G++ +             C     +     
Sbjct: 114 --GFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLL------------CDPPRAARGDEG 159

Query: 226 KNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNK----QTAGIVNKSFLSSMKKGSLL 281
               +D+LV              +ADV+     L K    +T  + +++ +  +K G++L
Sbjct: 160 DFRTLDELV-------------QEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAIL 206

Query: 282 VNIARGGLLDYEAIAHYLECGHLGGLGIDVAW-TEPFDPNDPILKFKNVLITPHVGG--- 337
           +N  RG ++D  A+   L  G    + +DV W  EP D N  +L+  ++  T H+ G   
Sbjct: 207 INACRGPVVDNAALLARLNAGQPLSVVLDV-WEGEP-DLNVALLEAVDIG-TSHIAGYTL 263

Query: 338 -----VTEHSYRSMAKVVG 351
                 T   + + +  +G
Sbjct: 264 EGKARGTTQVFEAYSAFIG 282

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 85.8 bits (212), Expect = 3e-19
 Identities = 27/150 (18%), Positives = 52/150 (34%), Gaps = 25/150 (16%)

Query: 160 MAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ 219
           MAI+       T  T+ G  V +LG G +G+ +A++    G K+    R     ++    
Sbjct: 144 MAIQH------TDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLAR---- 193

Query: 220 SSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGS 279
                     I ++  E        +     DV +  +      A +V  + L+ M   +
Sbjct: 194 ----------IAEMGMEPFHISKAAQELRDVDVCINTI-----PALVVTANVLAEMPSHT 238

Query: 280 LLVNIARGGLLDYEAIAHYLECGHLGGLGI 309
            ++++A          A       L   G+
Sbjct: 239 FVIDLASKPGGTDFRYAEKRGIKALLVPGL 268

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} Length = 300

 Score = 52.9 bits (127), Expect = 5e-08
 Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 37/150 (24%)

Query: 159 RMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFG--VKIIATKRSWASHSQV 216
            +AI+       T  T+ G  V +LG G  G+ +A+     G  VK+ A  RS A  ++ 
Sbjct: 145 MLAIQH------TDYTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGA--RSSAHLAR- 195

Query: 217 SCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMK 276
                        I ++       +++ E     D+ +     N   + I+N++ LSSM 
Sbjct: 196 -------------ITEMGLVPFHTDELKEHVKDIDICI-----NTIPSMILNQTVLSSMT 237

Query: 277 KGSLLVNIA--RGGLLDYEA-----IAHYL 299
             +L++++A   GG  D++      I   L
Sbjct: 238 PKTLILDLASRPGG-TDFKYAEKQGIKALL 266

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} Length = 286

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRS 209
            T+   G G     L++ L P G +II T R+
Sbjct: 6   GTLLSFGHGYTARVLSRALAPQGWRIIGTSRN 37

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A Length = 440

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 11/77 (14%)

Query: 172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGI-I 230
           G  + G  V I GFGN+G   A+     G +++A          V   +  +  + GI  
Sbjct: 230 GLQVEGARVAIQGFGNVGNAAARAFHDHGARVVA----------VQDHTGTVYNEAGIDP 279

Query: 231 DDLVDEKGCHEDIFEFA 247
            DL+        +  + 
Sbjct: 280 YDLLRHVQEFGGVRGYP 296

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A Length = 424

 Score = 44.0 bits (105), Expect = 5e-05
 Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 11/80 (13%)

Query: 172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGI-I 230
           G  L    + I GFGN G  LAK +   G K+I           +S  +  L   +G+ I
Sbjct: 216 GIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIG----------ISDANGGLYNPDGLDI 265

Query: 231 DDLVDEKGCHEDIFEFASKA 250
             L+D++     +    +  
Sbjct: 266 PYLLDKRDSFGMVTNLFTDV 285

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} Length = 419

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 12/77 (15%), Positives = 27/77 (35%), Gaps = 11/77 (14%)

Query: 172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGI-I 230
           G  L G  V + G G +G  +A      G++++A          V+     +    G+ +
Sbjct: 213 GLDLRGARVVVQGLGQVGAAVALHAERLGMRVVA----------VATSMGGMYAPEGLDV 262

Query: 231 DDLVDEKGCHEDIFEFA 247
            +++        +    
Sbjct: 263 AEVLSAYEATGSLPRLD 279

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Length = 286

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRS 209
             + I G G++G+ELA+RL   G ++   +RS
Sbjct: 4   SKILIAGCGDLGLELARRLTAQGHEVTGLRRS 35

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 3e-04
 Identities = 51/349 (14%), Positives = 90/349 (25%), Gaps = 96/349 (27%)

Query: 3   DICSEKRLTWFIIQFHQGDISKMEGMARSSDKNITRVLFCGP--HFPASHN-------YT 53
           ++ + K    F +        K+  +  +  K +T  L      H    H+         
Sbjct: 252 NVQNAKAWNAFNLS------CKI--LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 54  KEYLQNYPSIQVDVVP-----------------ISDVPDVIANY-HLC---VVKTMRLDS 92
           K  L  Y   +   +P                 I D      N+ H+    +   +    
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363

Query: 93  NCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA----------E 142
           N +  A   K+  +  V      I       I    I  DV                  E
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423

Query: 143 LTIYLM---LGLLRKQNEM----RMAIEQKKLGV---PTGETLLGKTVFILGFGNIG--- 189
            TI +    L L  K        R  ++   +                +      IG   
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH--IGHHL 481

Query: 190 --VELAKRLRPF----------GVKIIATKRSWASHSQVSCQSSALAV-------KNGII 230
             +E  +R+  F            KI     +W      +   S L         K  I 
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW------NASGSILNTLQQLKFYKPYIC 535

Query: 231 DDLVDEKGCHEDIFEFASKAD-VVVCC-------LSLNKQTAGIVNKSF 271
           D+    +     I +F  K +  ++C        ++L  +   I  ++ 
Sbjct: 536 DNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A* Length = 501

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 11/77 (14%)

Query: 172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGI-I 230
                 KT  + GFGN+G+   + L  FG K I           V     ++   +GI  
Sbjct: 239 TPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCIT----------VGESDGSIWNPDGIDP 288

Query: 231 DDLVDEKGCHEDIFEFA 247
            +L D K  H  I  F 
Sbjct: 289 KELEDFKLQHGTILGFP 305

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A Length = 419

 Score = 40.9 bits (97), Expect = 4e-04
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 15/85 (17%)

Query: 165 KKLGVPTGETLLGKTVFILGFGNIGVELAKRL-RPFGVKIIATKRSWASHSQVSCQSSAL 223
           K LG    +TL GKT+ I G+GN G  LAK +   FG+K++A          VS     +
Sbjct: 203 KVLGW---DTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVA----------VSDSKGGI 249

Query: 224 AVKNGI-IDDLVDEKGCHEDIFEFA 247
              +G+  D+++  K  H  + +F 
Sbjct: 250 YNPDGLNADEVLKWKNEHGSVKDFP 274

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A Length = 415

 Score = 40.9 bits (97), Expect = 5e-04
 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 12/78 (15%)

Query: 172 GETLLGKTVFILGFGNIGVELAKRL-RPFGVKIIATKRSWASHSQVSCQSSALAVKNGI- 229
           G      TV + GFGN+G   A  + +  G K++A          VS     +    G  
Sbjct: 204 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVA----------VSDSRGGIYNPEGFD 253

Query: 230 IDDLVDEKGCHEDIFEFA 247
           +++L+  K  H  +  + 
Sbjct: 254 VEELIRYKKEHGTVVTYP 271

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1 Length = 421

 Score = 40.9 bits (97), Expect = 5e-04
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 11/67 (16%)

Query: 172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGI-I 230
              + GKTV I G GN+G   A  L   G K+IA          VS  +     K G+ +
Sbjct: 205 WGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIA----------VSDINGVAYRKEGLNV 254

Query: 231 DDLVDEK 237
           + +   K
Sbjct: 255 ELIQKNK 261

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus} Length = 421

 Score = 40.6 bits (96), Expect = 5e-04
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 6/77 (7%)

Query: 172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGI-I 230
           G  +    + + GFGN+G    K +   G K+ A      +    +  + AL  +NGI  
Sbjct: 207 GIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCA-----IAEWDRNEGNYALYNENGIDF 261

Query: 231 DDLVDEKGCHEDIFEFA 247
            +L+  K  ++ +  F 
Sbjct: 262 KELLAYKEANKTLIGFP 278

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 Length = 364

 Score = 40.2 bits (95), Expect = 8e-04
 Identities = 34/187 (18%), Positives = 54/187 (28%), Gaps = 61/187 (32%)

Query: 164 QKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSAL 223
           ++  G    ++L G  V + G GN+   L K+L   G K++ T  + A+ S    +  A 
Sbjct: 163 KEAFG---SDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGAD 219

Query: 224 AVKNGIIDDLVDEKGCHEDIFEFASKADVVV-CCL--SLNKQTAGIVNKSFLSSMKKGSL 280
           AV                 I+      D+   C L   LN  T   +         K  +
Sbjct: 220 AVAP-------------NAIYG--VTCDIFAPCALGAVLNDFTIPQL---------KAKV 255

Query: 281 LVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHV----G 336
           +   A   L D                                L    ++  P      G
Sbjct: 256 IAGSADNQLKDPRH--------------------------GKYLHELGIVYAPDYVINAG 289

Query: 337 GVTEHSY 343
           GV  +  
Sbjct: 290 GVI-NVA 295

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 Length = 279

 Score = 39.9 bits (94), Expect = 9e-04
 Identities = 18/102 (17%), Positives = 40/102 (39%), Gaps = 17/102 (16%)

Query: 180 VFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC 239
           + ++G G IG  LA  LR  G  +I       S  Q +C+    AV+  ++D+   +   
Sbjct: 3   IGVVGLGLIGASLAGDLRRRGHYLIGV-----SRQQSTCE---KAVERQLVDEAGQD--- 51

Query: 240 HEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLL 281
                     A ++  C  + +     + +  +  +   +++
Sbjct: 52  ----LSLLQTAKIIFLCTPI-QLILPTL-EKLIPHLSPTAIV 87

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A Length = 290

 Score = 39.5 bits (93), Expect = 9e-04
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 16/81 (19%)

Query: 178 KTVFILGFGNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD 235
           KT++I G G IG  LA  ++      KI+   R        S +S  +A++ GI+D+   
Sbjct: 7   KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNR--------SDRSRDIALERGIVDE--- 55

Query: 236 EKGCHEDIFEFASKADVVVCC 256
                 D   FA+ ADV++  
Sbjct: 56  ---ATADFKVFAALADVIILA 73

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	370
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	100.0
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	100.0
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	100.0
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	100.0
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	100.0
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	100.0
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	100.0
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	100.0
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	100.0
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	100.0
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	100.0
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	100.0
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	100.0
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	100.0
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	100.0
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	100.0
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	100.0
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	100.0
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	100.0
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	100.0
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	100.0
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	100.0
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	100.0
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	100.0
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	100.0
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	100.0
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	100.0
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	100.0
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	100.0
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	100.0
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	100.0
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	100.0
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	100.0
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	100.0
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	100.0
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	99.96
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	99.94
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	99.91
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	99.91
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	99.83
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	99.8
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	99.73
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	99.71
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	99.67
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	99.67
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	99.66
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	99.58
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	99.39
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	99.39
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	99.35
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	99.34
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	99.29
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	99.29
3qha_A	296	Putative oxidoreductase; seattle structural genomi	99.29
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	99.28
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	99.27
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	99.27
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	99.26
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	99.24
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	99.23
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	99.23
4ezb_A	317	Uncharacterized conserved protein; structural geno	99.2
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	99.2
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	99.19
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	99.19
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	99.18
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	99.15
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	99.14
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	99.11
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	99.1
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	99.09
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	99.04
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	99.03
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	99.03
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	99.02
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	99.02
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	99.02
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	99.0
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	98.99
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	98.99
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	98.99
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	98.98
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	98.96
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	98.96
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	98.95
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	98.91
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	98.91
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	98.91
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	98.89
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	98.41
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	98.87
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	98.85
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.81
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	98.81
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.8
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	98.79
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	98.78
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	98.77
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	98.74
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	98.74
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	98.68
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	98.67
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	98.65
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	98.65
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	98.65
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	98.62
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	98.58
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	98.56
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	98.56
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	98.56
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	98.56
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	98.55
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	98.52
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	98.48
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	98.47
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	98.46
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	98.42
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	98.42
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	98.41
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	98.41
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	98.4
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	98.38
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	98.38
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	98.37
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	98.37
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	98.37
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	98.37
3l07_A	285	Bifunctional protein fold; structural genomics, ID	98.35
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	98.34
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	98.34
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	98.33
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	98.33
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	98.32
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	98.31
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	98.31
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	98.3
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	98.29
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	98.28
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	98.28
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	98.28
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	98.23
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	98.22
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	98.22
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	98.21
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	98.2
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	98.19
2duw_A	145	Putative COA-binding protein; ligand binding prote	98.15
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	98.15
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	98.13
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	98.12
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	98.11
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	97.98
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	97.98
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.97
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.92
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	97.89
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	97.87
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.86
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	97.85
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.84
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.83
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	97.81
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	97.81
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	97.81
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	97.77
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.76
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.75
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	97.71
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	97.69
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	97.67
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.66
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	97.65
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	97.65
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.64
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.64
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	97.63
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	97.6
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.6
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.58
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	97.57
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	97.56
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	97.55
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.53
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.42
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	97.41
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	97.4
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	97.4
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.39
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	97.34
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	97.33
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	97.25
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	97.21
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	97.2
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	97.19
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	97.19
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	97.16
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	97.16
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	97.14
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.13
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	97.13
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	97.12
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.1
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.08
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	97.07
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	97.04
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.04
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	97.03
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	97.02
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	97.01
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	97.01
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	97.01
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.99
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	96.96
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	96.94
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	96.89
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	96.85
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	96.82
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	96.79
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	96.78
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.78
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.76
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	96.74
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.73
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.7
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	96.69
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	96.67
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	96.67
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	96.67
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	96.65
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	96.64
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	96.64
1ydw_A	362	AX110P-like protein; structural genomics, protein	96.62
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	96.62
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	96.62
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.57
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	96.53
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	96.52
4f2g_A	309	Otcase 1, ornithine carbamoyltransferase 1; struct	96.52
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	96.48
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	96.48
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	96.47
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.45
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	96.45
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	96.43
3r7f_A	304	Aspartate carbamoyltransferase; aspartate transcar	96.4
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	96.4
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	96.39
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	96.38
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.38
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.37
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.37
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	96.34
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	96.33
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	96.29
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	96.28
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	96.25
4had_A	350	Probable oxidoreductase protein; structural genomi	96.23
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.23
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.23
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	96.21
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	96.19
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	96.19
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	96.17
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	96.16
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.15
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	96.13
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	96.13
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	96.11
1pg5_A	299	Aspartate carbamoyltransferase; 2.60A {Sulfolobus	96.1
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	96.1
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	96.08
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	96.07
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	96.07
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	96.04
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	96.03
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	96.02
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	96.01
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	96.0
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	95.98
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	95.98
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	95.97
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	95.96
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	95.93
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	95.93
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.92
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	95.92
2ef0_A	301	Ornithine carbamoyltransferase; TTHA1199, thermus	95.92
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	95.89
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	95.89
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	95.88
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	95.86
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	95.85
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	95.84
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	95.84
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	95.82
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	95.82
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	95.81
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	95.8
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	95.8
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	95.78
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	95.75
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	95.74
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	95.74
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	95.72
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	95.72
3on5_A	362	BH1974 protein; structural genomics, joint center	95.7
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	95.69
4ep1_A	340	Otcase, ornithine carbamoyltransferase; structural	95.69
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	95.68
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	95.68
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	95.68
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	95.68
1ml4_A	308	Aspartate transcarbamoylase; beta pleated sheet, p	95.68
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	95.67
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	95.67
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	95.66
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	95.64
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	95.64
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	95.62
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	95.62
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	95.61
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	95.6
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	95.57
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	95.57
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	95.56
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	95.54
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	95.54
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	95.53
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	95.49
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	95.48
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	95.47
2i6u_A	307	Otcase, ornithine carbamoyltransferase; X-RAY crys	95.46
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	95.46
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	95.45
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	95.42
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	95.42
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	95.42
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	95.42
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	95.4
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	95.39
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	95.39
3csu_A	310	Protein (aspartate carbamoyltransferase); transfer	95.37
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	95.35
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	95.34
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	95.34
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	95.33
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	95.33
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	95.33
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	95.32
3tpf_A	307	Otcase, ornithine carbamoyltransferase; structural	95.32
3gd5_A	323	Otcase, ornithine carbamoyltransferase; structural	95.28
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	95.27
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	95.25
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	95.21
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	95.2
1pvv_A	315	Otcase, ornithine carbamoyltransferase; dodecamer;	95.17
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	95.15
1vlv_A	325	Otcase, ornithine carbamoyltransferase; TM1097, st	95.15
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	95.12
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	95.11
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	95.1
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	95.08
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	95.02
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	95.02
4eye_A	342	Probable oxidoreductase; structural genomics, niai	95.01
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	94.98
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	94.95
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	94.95
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	94.93
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	94.92
4h3v_A	390	Oxidoreductase domain protein; structural genomics	94.9
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	94.89
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	94.88
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	94.85
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	94.79
4a8t_A	339	Putrescine carbamoyltransferase; trabnsferase PALO	94.77
1oth_A	321	Protein (ornithine transcarbamoylase); transferase	94.76
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	94.74
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	94.74
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	94.74
3gms_A	340	Putative NADPH:quinone reductase; structural genom	94.73
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	94.7
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	94.68
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	94.66
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	94.65
1dxh_A	335	Ornithine carbamoyltransferase; transcarbamylase;	94.63
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	94.57
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	94.55
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	94.53
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	94.53
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	94.53
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	94.5
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	94.49
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	94.45
4g65_A	461	TRK system potassium uptake protein TRKA; structur	94.45
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	94.44
4a8p_A	355	Putrescine carbamoyltransferase; ornithine agmatin	94.42
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	94.42
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	94.4
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	94.4
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	94.4
3grf_A	328	Ornithine carbamoyltransferase; ornithine transcar	94.38
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	94.31
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	94.3
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	94.3
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	94.3
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	94.29
1duv_G	333	Octase-1, ornithine transcarbamoylase; enzyme-inhi	94.29
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	94.29
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	94.28
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	94.27
1xq6_A	253	Unknown protein; structural genomics, protein stru	94.25
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	94.24
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	94.23
3sds_A	353	Ornithine carbamoyltransferase, mitochondrial; str	94.22
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	94.21
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	94.17
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	94.14
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	94.1
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	94.1
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	94.05
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	94.05
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	94.04
3d6n_B	291	Aspartate carbamoyltransferase; reactor, chamber,	94.04
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	93.99
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	93.99
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	93.98
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	93.98
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	93.98
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	93.94
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	93.92
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	93.92
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	93.91
1lnq_A	336	MTHK channels, potassium channel related protein;	93.9
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	93.87
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	93.82
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	93.8
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	93.74
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	93.7
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	93.68
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	93.66
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	93.65
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	93.63
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	93.62
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	93.6
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	93.58
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	93.58
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	93.53
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	93.52
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	93.52
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	93.51
4amu_A	365	Ornithine carbamoyltransferase, catabolic; ornithi	93.48
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	93.44
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	93.43
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	93.41
3h9e_O	346	Glyceraldehyde-3-phosphate dehydrogenase, testis-;	93.38
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	93.38
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	93.35
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	93.34
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	93.31
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	93.28
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	93.24
2w37_A	359	Ornithine carbamoyltransferase, catabolic; transca	93.24
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	93.15
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	93.11
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	93.08
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	93.08
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	93.04
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	93.04
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	92.96
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	92.95
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	92.91
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	92.91
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	92.9
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	92.86
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	92.85
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	92.83
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	92.82
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	92.81
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	92.81
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	92.78
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	92.76
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	92.73
3l5o_A	270	Uncharacterized protein from DUF364 family; RARE m	92.73
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	92.71
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	92.69
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	92.68
4ekn_B	306	Aspartate carbamoyltransferase; atcase, aspartate	92.61
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	92.6
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	92.57
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	92.54
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	92.51
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	92.49
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	92.49
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	92.46
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	92.46
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	92.46
1js1_X	324	Transcarbamylase; alpha/beta topology, two domains	92.46

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=100.00  E-value=4.6e-71  Score=539.20  Aligned_cols=304  Identities=24%  Similarity=0.338  Sum_probs=262.0

Q ss_pred             cEEEEeCCCCCCchhhHHHHHhcCCCceeeeCCCCCh-hhhcCcceEEEEe-CCCCCHHHHhcCCCCeEEEEeCcccCcc
Q 017490           37 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDV-PDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLEGV  114 (370)
Q Consensus        37 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~i  114 (370)
                      |||+++.... ....+.++.++.. .+++...+..++ .+.+.++|+++++ ..++++++|+++|+||||++.|+|+|||
T Consensus         1 Mkil~~~~~~-~~~p~~~e~l~~~-~~~~~~~~~~~~~~~~l~~ad~i~v~~~~~i~~~~l~~~p~Lk~I~~~~~G~d~i   78 (334)
T 3kb6_A            1 MNVLFTSVPQ-EDVPFYQEALKDL-SLKIYTTDVSKVPENELKKAELISVFVYDKLTEELLSKMPRLKLIHTRSVGFDHI   78 (334)
T ss_dssp             -CEEECSCCT-THHHHHHHHTTTS-CEEECSSCGGGSCHHHHHHCSEEEECTTSCBCHHHHHTCTTCCEEEESSSCCTTB
T ss_pred             CEEEEeCCCc-ccCHHHHHHHHhC-CcEEEeCCcccCCHHHhcCCCEEEEeCCCCCCHHHHhcCCCCcEEEECCcccchh
Confidence            6899986432 2334445555432 333332222222 3456789987665 5799999999999999999999999999


Q ss_pred             chhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC---CCcccccCceEEEEecCchhHH
Q 017490          115 DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV---PTGETLLGKTVFILGFGNIGVE  191 (370)
Q Consensus       115 d~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~---~~~~~l~g~tvGIiGlG~IG~~  191 (370)
                      |+++|+++||.|+|+||+   |+.+||||++++||++.|++..+++.++++.|..   ..+++++|+||||||+|.||+.
T Consensus        79 d~~~~~~~gI~v~n~p~~---~~~~vAE~~~~l~L~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiG~G~IG~~  155 (334)
T 3kb6_A           79 DLDYCKKKGILVTHIPAY---SPESVAEHTFAMILTLVKRLKRIEDRVKKLNFSQDSEILARELNRLTLGVIGTGRIGSR  155 (334)
T ss_dssp             CHHHHHHHTCEEECCTTS---CHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCGGGCBCCGGGSEEEEECCSHHHHH
T ss_pred             cHHHHHHCCCEEEECCCc---CcHHHHHHHHHHHHHHhhccccccccccccccccccccccceecCcEEEEECcchHHHH
Confidence            999999999999999998   7899999999999999999999999999998864   3578999999999999999999


Q ss_pred             HHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHH
Q 017490          192 LAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSF  271 (370)
Q Consensus       192 vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~  271 (370)
                      +|+++++|||+|++||+..+..                   .......+.++++++++||+|++|||+|++|++|||++.
T Consensus       156 va~~~~~fg~~v~~~d~~~~~~-------------------~~~~~~~~~~l~ell~~sDivslh~Plt~~T~~li~~~~  216 (334)
T 3kb6_A          156 VAMYGLAFGMKVLCYDVVKRED-------------------LKEKGCVYTSLDELLKESDVISLHVPYTKETHHMINEER  216 (334)
T ss_dssp             HHHHHHHTTCEEEEECSSCCHH-------------------HHHTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHH
T ss_pred             HHHhhcccCceeeecCCccchh-------------------hhhcCceecCHHHHHhhCCEEEEcCCCChhhccCcCHHH
Confidence            9999999999999999875431                   001111356899999999999999999999999999999


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCC---------------cccCCCceEEccCCC
Q 017490          272 LSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPND---------------PILKFKNVLITPHVG  336 (370)
Q Consensus       272 l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~---------------pL~~~~nvilTPHia  336 (370)
                      |++||+|++|||+|||++||++||++||++|+|+||+||||++||++.++               |||++|||++|||+|
T Consensus       217 l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~gA~LDV~~~EPl~~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia  296 (334)
T 3kb6_A          217 ISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELACKDNVIITPHIA  296 (334)
T ss_dssp             HHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEEEEEESCCTTHHHHHTTGGGGTCCCHHHHHHHHHHTSTTEEECCSCT
T ss_pred             HhhcCCCeEEEecCccccccHHHHHHHHHhCCceEEEEeCCCCCCCcccccccccccccccccchhhccCCCEEECCchh
Confidence            99999999999999999999999999999999999999999999987766               688999999999999


Q ss_pred             CccHHHHHHHHHHHHHHHHHHHcCCCCC
Q 017490          337 GVTEHSYRSMAKVVGDVALQLHAGTPLT  364 (370)
Q Consensus       337 ~~t~~~~~~~~~~~~~ni~~~~~g~~~~  364 (370)
                      |+|.++++++.+.+++|+.+|++|+++.
T Consensus       297 ~~T~ea~~~~~~~~~~ni~~~l~Ge~~~  324 (334)
T 3kb6_A          297 YYTDKSLERIREETVKVVKAFVKGDLEQ  324 (334)
T ss_dssp             TCBHHHHHHHHHHHHHHHHHHHHTCGGG
T ss_pred             hChHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence            9999999999999999999999998764

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=100.00  E-value=2.8e-69  Score=527.90  Aligned_cols=305  Identities=25%  Similarity=0.399  Sum_probs=266.9

Q ss_pred             CccEEEEeCCCCCCchhhHHHHHhcCCCceee----eCCCCChhhhcCcceEEEEe-CCCCCHHHHhcC-CCCeEEEEeC
Q 017490           35 NITRVLFCGPHFPASHNYTKEYLQNYPSIQVD----VVPISDVPDVIANYHLCVVK-TMRLDSNCISRA-NQMKLIMQFG  108 (370)
Q Consensus        35 ~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~-~~Lk~I~~~~  108 (370)
                      .+||||++.+..+.   .. +.++...++.+.    ..+.+++.+.++++|+++++ ..++++++|+++ |+||||++.|
T Consensus        27 ~~~kvlv~~~~~~~---~~-~~l~~~~~v~~~~~~~~~~~~~l~~~~~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~~  102 (345)
T 4g2n_A           27 PIQKAFLCRRFTPA---IE-AELRQRFDLEVNLEDTVLTPSGIASRAHGAEVLFVTATEAITAEVIRKLQPGLKTIATLS  102 (345)
T ss_dssp             CCCEEEESSCCCHH---HH-HHHHHHSEEEECTTCCCCCHHHHHHHTTTCSEEEECTTSCBCHHHHHHTTTTCCEEEESS
T ss_pred             CCCEEEEeCCCCHH---HH-HHHHccCCEEEecCCCCCCHHHHHHHhcCCeEEEEeCCCCCCHHHHHhhcCCceEEEEcC
Confidence            35799999875432   22 233322233322    12345677788999998886 479999999997 7999999999


Q ss_pred             cccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC-----CCcccccCceEEEE
Q 017490          109 VGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV-----PTGETLLGKTVFIL  183 (370)
Q Consensus       109 ~G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~-----~~~~~l~g~tvGIi  183 (370)
                      +|+|+||+++|+++||.|+|+||+   |+.+||||++++||++.|++..+++.+++|.|..     ..+++|+|+|||||
T Consensus       103 ~G~D~id~~~a~~~gI~V~n~pg~---~~~~vAE~a~~l~L~~~R~~~~~~~~~r~g~W~~~~~~~~~g~~l~gktvGII  179 (345)
T 4g2n_A          103 VGYDHIDMAAARSLGIKVLHTPDV---LSDACAEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIF  179 (345)
T ss_dssp             SCCTTBCHHHHHHTTCEEECCCSC---CHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEE
T ss_pred             CcccccCHHHHHhCCEEEEECCcc---cchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccccccCCCEEEEE
Confidence            999999999999999999999998   7899999999999999999999999999999963     24789999999999


Q ss_pred             ecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCC-CCCHHHHHhcCCEEEEeccCChh
Q 017490          184 GFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC-HEDIFEFASKADVVVCCLSLNKQ  262 (370)
Q Consensus       184 GlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~~aDiV~l~lP~t~~  262 (370)
                      |+|.||+++|+++++|||+|++|||+..+..                  ... ... ..++++++++||+|++|+|++++
T Consensus       180 GlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~------------------~~~-g~~~~~~l~ell~~sDvV~l~~Plt~~  240 (345)
T 4g2n_A          180 GMGRIGRAIATRARGFGLAIHYHNRTRLSHA------------------LEE-GAIYHDTLDSLLGASDIFLIAAPGRPE  240 (345)
T ss_dssp             SCSHHHHHHHHHHHTTTCEEEEECSSCCCHH------------------HHT-TCEECSSHHHHHHTCSEEEECSCCCGG
T ss_pred             EeChhHHHHHHHHHHCCCEEEEECCCCcchh------------------hhc-CCeEeCCHHHHHhhCCEEEEecCCCHH
Confidence            9999999999999999999999999764310                  000 111 24899999999999999999999


Q ss_pred             hhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceEEccCCCCccHHH
Q 017490          263 TAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHS  342 (370)
Q Consensus       263 t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~  342 (370)
                      |+++|+++.|+.||+|++|||+|||+++|++||+++|++|+|+||+||||++|| ++++|||++|||++|||+||+|.++
T Consensus       241 T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~LDVf~~EP-~~~~pL~~~~nvilTPHia~~t~e~  319 (345)
T 4g2n_A          241 LKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEP-AIDPRYRSLDNIFLTPHIGSATHET  319 (345)
T ss_dssp             GTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTT-SCCTTGGGCTTEEECCSCTTCBHHH
T ss_pred             HHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCceEEEecCCCCCC-CCCchHHhCCCEEEcCccCcCCHHH
Confidence            999999999999999999999999999999999999999999999999999999 8899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCCCc
Q 017490          343 YRSMAKVVGDVALQLHAGTPLTGL  366 (370)
Q Consensus       343 ~~~~~~~~~~ni~~~~~g~~~~~~  366 (370)
                      +.++.+.+++|+.+|++|+++.|.
T Consensus       320 ~~~~~~~~~~ni~~~l~g~~~~~~  343 (345)
T 4g2n_A          320 RDAMGWLLIQGIEALNQSDVPDNL  343 (345)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCTTB
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCCC
Confidence            999999999999999999998764

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=100.00  E-value=4.5e-69  Score=522.29  Aligned_cols=302  Identities=22%  Similarity=0.323  Sum_probs=267.0

Q ss_pred             cEEEEeCCCCCCchhhHHHH-HhcCCCceeeeC-CCCChhhhcCcceEEEEeCCCCCHHHHhcCCCCeEEEEeCcccCcc
Q 017490           37 TRVLFCGPHFPASHNYTKEY-LQNYPSIQVDVV-PISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGV  114 (370)
Q Consensus        37 ~~vl~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~i  114 (370)
                      |||+++.+..   ..+...+ .+.+|++++... +.+++.+.++++|+++.. .++++++|+++|+||||++.|+|+|+|
T Consensus         6 mkili~~~~~---~~~~~~L~~~~~p~~~~~~~~~~~~~~~~~~~ad~li~~-~~~~~~~l~~~~~Lk~I~~~~~G~d~i   81 (324)
T 3hg7_A            6 RTLLLLSQDN---AHYERLLKAAHLPHLRILRADNQSDAEKLIGEAHILMAE-PARAKPLLAKANKLSWFQSTYAGVDVL   81 (324)
T ss_dssp             EEEEEESTTH---HHHHHHHHHSCCTTEEEEECSSHHHHHHHGGGCSEEEEC-HHHHGGGGGGCTTCCEEEESSSCCGGG
T ss_pred             cEEEEecCCC---HHHHHHHhhccCCCeEEEeCCChhHHHHHhCCCEEEEEC-CCCCHHHHhhCCCceEEEECCCCCCcc
Confidence            7999997653   3444444 456788887654 345567788999998874 356678999999999999999999999


Q ss_pred             chhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEecCchhHHHHH
Q 017490          115 DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAK  194 (370)
Q Consensus       115 d~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~  194 (370)
                      |++++++ ||.|+|+||+   |+.+||||++++||++.|++..+++.+++|.|....+.+++|+||||||+|.||+++|+
T Consensus        82 d~~~~~~-gI~v~n~~g~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~l~g~tvGIIGlG~IG~~vA~  157 (324)
T 3hg7_A           82 LDARCRR-DYQLTNVRGI---FGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQSHPYQGLKGRTLLILGTGSIGQHIAH  157 (324)
T ss_dssp             SCTTSCC-SSEEECCCSC---CHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCCCCSTTCEEEEECCSHHHHHHHH
T ss_pred             ChHHHhC-CEEEEECCCc---ChHHHHHHHHHHHHHHHhChHHHHHHHhhCCCcCCCCcccccceEEEEEECHHHHHHHH
Confidence            9988754 9999999998   78999999999999999999999999999999877789999999999999999999999


Q ss_pred             HhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhc
Q 017490          195 RLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSS  274 (370)
Q Consensus       195 ~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~  274 (370)
                      ++++|||+|++|||++....                  .........++++++++||+|++|+|++++|+++|+++.|+.
T Consensus       158 ~l~~~G~~V~~~dr~~~~~~------------------~~~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~  219 (324)
T 3hg7_A          158 TGKHFGMKVLGVSRSGRERA------------------GFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEH  219 (324)
T ss_dssp             HHHHTTCEEEEECSSCCCCT------------------TCSEEECGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTTTC
T ss_pred             HHHhCCCEEEEEcCChHHhh------------------hhhcccccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHHhc
Confidence            99999999999999864310                  111111346899999999999999999999999999999999


Q ss_pred             CCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceEEccCCCCccHHHHHHHHHHHHHHH
Q 017490          275 MKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVA  354 (370)
Q Consensus       275 mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~~ni  354 (370)
                      ||+|++|||+|||+++|+++|+++|++|+|+||+||||++||+|+++|||++|||++|||+||+|.+  .++.+.+++|+
T Consensus       220 mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~--~~~~~~~~~nl  297 (324)
T 3hg7_A          220 CKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNSAYSFP--DDVAQIFVRNY  297 (324)
T ss_dssp             SCTTCEEEECSCGGGBCHHHHHHHHHTTSSSEEEESCCSSSSCCTTCTTTTCTTEEECCSCSSCCCH--HHHHHHHHHHH
T ss_pred             CCCCcEEEECCCchhhCHHHHHHHHHcCCceEEEeccCCCCCCCCCChhhcCCCEEEeCCCccccHH--HHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999976  57999999999


Q ss_pred             HHHHcCCCCCCc
Q 017490          355 LQLHAGTPLTGL  366 (370)
Q Consensus       355 ~~~~~g~~~~~~  366 (370)
                      .+|++|+++.|.
T Consensus       298 ~~~~~G~~~~~~  309 (324)
T 3hg7_A          298 IRFIDGQPLDGK  309 (324)
T ss_dssp             HHHHTTCCCTTB
T ss_pred             HHHHcCCCCcce
Confidence            999999998764

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=100.00  E-value=4.9e-69  Score=522.51  Aligned_cols=304  Identities=21%  Similarity=0.320  Sum_probs=264.9

Q ss_pred             ccEEEEeCCCCCCchhhHHHHHhcCCCceeeeCCCCChhhhcCcceEEEEeCCCCCHHHH-hcCCCCeEEEEeCcccCcc
Q 017490           36 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCI-SRANQMKLIMQFGVGLEGV  114 (370)
Q Consensus        36 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~l-~~~~~Lk~I~~~~~G~d~i  114 (370)
                      |||||++.+..+   .....+.+.++++++...+. ...+.+.++|+++.+..++ +++| +++|+||||++.|+|+|+|
T Consensus         1 m~kil~~~~~~~---~~~~~L~~~~~~~~~~~~~~-~~~~~~~~ad~l~~~~~~~-~~~l~~~~~~Lk~I~~~~~G~d~i   75 (324)
T 3evt_A            1 MSLVLMAQATKP---EQLQQLQTTYPDWTFKDAAA-VTAADYDQIEVMYGNHPLL-KTILARPTNQLKFVQVISAGVDYL   75 (324)
T ss_dssp             -CEEEECSCCCH---HHHHHHHHHCTTCEEEETTS-CCTTTGGGEEEEESCCTHH-HHHHHSTTCCCCEEECSSSCCTTS
T ss_pred             CcEEEEecCCCH---HHHHHHHhhCCCeEEecCCc-cChHHhCCcEEEEECCcCh-HHHHHhhCCCceEEEECCcccccc
Confidence            579999987543   33333445566666654322 3345678899988766667 8999 7899999999999999999


Q ss_pred             chhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHH-HHHHHhcccCCC-CcccccCceEEEEecCchhHHH
Q 017490          115 DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEM-RMAIEQKKLGVP-TGETLLGKTVFILGFGNIGVEL  192 (370)
Q Consensus       115 d~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~-~~~~~~~~~~~~-~~~~l~g~tvGIiGlG~IG~~v  192 (370)
                      |+++++++||.|+|+||+   |+.+||||++++||++.|++..+ ++.++++.|... .+++++|+||||||+|.||+++
T Consensus        76 d~~~~~~~gI~v~n~~g~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~~W~~~~~~~~l~gktvGIiGlG~IG~~v  152 (324)
T 3evt_A           76 PLKALQAAGVVVANTSGI---HADAISESVLAAMLSVVRGYHAAWLNQRGARQWALPMTTSTLTGQQLLIYGTGQIGQSL  152 (324)
T ss_dssp             CHHHHHHTTCEEECCTTH---HHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCSSCSSCCCCSTTCEEEEECCSHHHHHH
T ss_pred             CHHHHHHCCcEEEECCCc---CchHHHHHHHHHHHHHHhChhHHHHHHHhcCCcccCCCCccccCCeEEEECcCHHHHHH
Confidence            999999999999999997   78999999999999999999999 999999999765 4889999999999999999999


Q ss_pred             HHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHH
Q 017490          193 AKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFL  272 (370)
Q Consensus       193 A~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l  272 (370)
                      |+++++|||+|++|||+..+..                  .........++++++++||+|++|+|++++|+++|+++.|
T Consensus       153 A~~l~~~G~~V~~~dr~~~~~~------------------~~~~~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~~~~l  214 (324)
T 3evt_A          153 AAKASALGMHVIGVNTTGHPAD------------------HFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELF  214 (324)
T ss_dssp             HHHHHHTTCEEEEEESSCCCCT------------------TCSEEEEGGGCHHHHHHCSEEEECCCCCGGGTTCBSHHHH
T ss_pred             HHHHHhCCCEEEEECCCcchhH------------------hHhhccccCCHHHHHhhCCEEEEcCCCchHHHHhcCHHHH
Confidence            9999999999999999865421                  1111112357899999999999999999999999999999


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceEEccCCCCccHHHHHHHHHHHHH
Q 017490          273 SSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGD  352 (370)
Q Consensus       273 ~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~~  352 (370)
                      +.||+|++|||+|||+++|+++|+++|++|+++||+||||++||+|+++|||++|||++|||+||+|.++.+++.+.+++
T Consensus       215 ~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~~  294 (324)
T 3evt_A          215 QQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHISGQIAHFRATVFPIFAA  294 (324)
T ss_dssp             HTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCSEEEESSCSSSSCCTTCGGGGCSSEEECCSCTTCCCCHHHHHHHHHHH
T ss_pred             hcCCCCCEEEEcCCChhhhHHHHHHHHHhCCceEEEeCCCCCCCCCCCChhhcCCCEEEcCccccChHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCC-CCCC
Q 017490          353 VALQLHAGT-PLTG  365 (370)
Q Consensus       353 ni~~~~~g~-~~~~  365 (370)
                      |+.+|++|+ ++.|
T Consensus       295 nl~~~l~~~~~~~n  308 (324)
T 3evt_A          295 NFAQFVKDGTLVRN  308 (324)
T ss_dssp             HHHHHHHHSCCCSC
T ss_pred             HHHHHHhCCCCCCc
Confidence            999998654 5554

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=100.00  E-value=2.2e-68  Score=519.72  Aligned_cols=306  Identities=24%  Similarity=0.322  Sum_probs=268.2

Q ss_pred             ccEEEEeCCCCCCchhhHHHHHhcCCCceeee----CCCCChhhhcCcceEEEE-eCCCCCHHHHhcCCCCeEEEEeCcc
Q 017490           36 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV----VPISDVPDVIANYHLCVV-KTMRLDSNCISRANQMKLIMQFGVG  110 (370)
Q Consensus        36 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~d~~i~-~~~~~~~~~l~~~~~Lk~I~~~~~G  110 (370)
                      ++||+++.+..+   . ..+.++...++.+..    .+.+++.+.++++|++++ +..++++++|+++|+||||++.|+|
T Consensus         2 ~~kvlv~~~~~~---~-~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~i~~~~l~~~~~Lk~I~~~~~G   77 (330)
T 4e5n_A            2 LPKLVITHRVHE---E-ILQLLAPHCELITNQTDSTLTREEILRRCRDAQAMMAFMPDRVDADFLQACPELRVIGCALKG   77 (330)
T ss_dssp             CCEEEECSCCCH---H-HHHHHTTTCEEECCCSSSCCCHHHHHHHHTTCSEEEECTTCCBCHHHHHHCTTCCEEEESSSC
T ss_pred             CCEEEEecCCCH---H-HHHHHHhCCeEEEecCCCCCCHHHHHHHhCCCeEEEEeCCCCCCHHHHhhCCCCcEEEECCCc
Confidence            368999876532   2 234454433332211    234557778899999888 4679999999999999999999999


Q ss_pred             cCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccC----CCCcccccCceEEEEecC
Q 017490          111 LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG----VPTGETLLGKTVFILGFG  186 (370)
Q Consensus       111 ~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~----~~~~~~l~g~tvGIiGlG  186 (370)
                      +|+||+++|+++||.|+|+||+   |+.+||||++++||++.|++..+++.+++|.|.    ...+++|+|+||||||+|
T Consensus        78 ~d~id~~~~~~~gI~v~n~~~~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~tvGIIG~G  154 (330)
T 4e5n_A           78 FDNFDVDACTARGVWLTFVPDL---LTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMG  154 (330)
T ss_dssp             CTTBCHHHHHHTTCEEECCSST---THHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCSCCCCCCSTTCEEEEECCS
T ss_pred             ccccCHHHHHhcCcEEEeCCCC---CchHHHHHHHHHHHHHHhChHHHHHHHHhCCccccCccccCCccCCCEEEEEeeC
Confidence            9999999999999999999998   789999999999999999999999999999986    235789999999999999


Q ss_pred             chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEEEeccCChhhhc
Q 017490          187 NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTAG  265 (370)
Q Consensus       187 ~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~lP~t~~t~~  265 (370)
                      .||+++|+++++|||+|++|||+..+..                  .....+ ...++++++++||+|++|+|++++|++
T Consensus       155 ~IG~~vA~~l~~~G~~V~~~d~~~~~~~------------------~~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t~~  216 (330)
T 4e5n_A          155 AIGLAMADRLQGWGATLQYHEAKALDTQ------------------TEQRLGLRQVACSELFASSDFILLALPLNADTLH  216 (330)
T ss_dssp             HHHHHHHHHTTTSCCEEEEECSSCCCHH------------------HHHHHTEEECCHHHHHHHCSEEEECCCCSTTTTT
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCCCcHh------------------HHHhcCceeCCHHHHHhhCCEEEEcCCCCHHHHH
Confidence            9999999999999999999999863310                  011111 235899999999999999999999999


Q ss_pred             ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCC-------CCCCCCcccCCCceEEccCCCCc
Q 017490          266 IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE-------PFDPNDPILKFKNVLITPHVGGV  338 (370)
Q Consensus       266 li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~E-------Pl~~~~pL~~~~nvilTPHia~~  338 (370)
                      +++++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++|       |++.++|||++|||++|||+||+
T Consensus       217 li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~E~~~~~~~Pl~~~~~L~~~~nvilTPHia~~  296 (330)
T 4e5n_A          217 LVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSA  296 (330)
T ss_dssp             CBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCGGGCTTCTTCCSSCCHHHHTCSSEEECSSCTTC
T ss_pred             HhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCccEEEecccccccccccCCCCCCCchHHcCCCEEECCcCCCC
Confidence            99999999999999999999999999999999999999999999999999       99999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 017490          339 TEHSYRSMAKVVGDVALQLHAGTPLTGL  366 (370)
Q Consensus       339 t~~~~~~~~~~~~~ni~~~~~g~~~~~~  366 (370)
                      |.++.+++.+.+++|+.+|++|+++.|.
T Consensus       297 t~e~~~~~~~~~~~ni~~~~~g~~~~~~  324 (330)
T 4e5n_A          297 VRAVRLEIERCAAQNILQALAGERPINA  324 (330)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTSCCTTB
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCCCCCCc
Confidence            9999999999999999999999988754

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=100.00  E-value=1.6e-67  Score=515.19  Aligned_cols=306  Identities=24%  Similarity=0.348  Sum_probs=267.2

Q ss_pred             ccEEEEeCCCCCCchhhHHHHHhcCCCceeeeC---CCCChhhhcCcceEEEEe-CCCCCHH-HHhcCC--CCeEEEEeC
Q 017490           36 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVV---PISDVPDVIANYHLCVVK-TMRLDSN-CISRAN--QMKLIMQFG  108 (370)
Q Consensus        36 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~d~~i~~-~~~~~~~-~l~~~~--~Lk~I~~~~  108 (370)
                      ||||++++.. +....+..++++.+ ++++...   ..+++.+.++++|+++++ ..+++++ +|+++|  +||+|++.|
T Consensus         1 Mmki~~~~~~-~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~~l~~~~~~~Lk~I~~~~   78 (343)
T 2yq5_A            1 MTKIAMYNVS-PIEVPYIEDWAKKN-DVEIKTTDQALTSATVDLAEGCSSVSLKPLGPVDEEVVYQKLSEYGVKCIGLRI   78 (343)
T ss_dssp             -CEEEEESCC-GGGHHHHHHHHHHH-TCEEEEESSCCSTTGGGGGTTCSEEEECCSSCBCCHHHHHHHHHTTCCEEEESS
T ss_pred             CceEEEEecC-cccHHHHHHHHHhC-CeEEEECCCCCCHHHHHHhcCCcEEEEcCCCCcCHHHHHHhccccCceEEEECc
Confidence            5899999843 45566666666543 5555432   235677888999998886 5899999 999985  699999999


Q ss_pred             cccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHH-hcccCC---CCcccccCceEEEEe
Q 017490          109 VGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIE-QKKLGV---PTGETLLGKTVFILG  184 (370)
Q Consensus       109 ~G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~-~~~~~~---~~~~~l~g~tvGIiG  184 (370)
                      +|+|+||+++|+++||.|+|+||+   |+.+||||++++||++.|++..+++.++ +|.|..   ..+++|+|+||||||
T Consensus        79 ~G~d~id~~~~~~~gI~v~n~p~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~g~~~w~~~~~~~~l~gktvgIiG  155 (343)
T 2yq5_A           79 VGFNTINFDWTKKYNLLVTNVPVY---SPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWPSNLISNEIYNLTVGLIG  155 (343)
T ss_dssp             SCCTTBCSSTTCC--CEEECCSCS---CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCCCCGGGCBCCGGGSEEEEEC
T ss_pred             eeecccchhHHHhCCEEEEECCCC---CcHHHHHHHHHHHHHHHhchHHHHHHHHHcCCcccccCCCccccCCCeEEEEe
Confidence            999999999999999999999998   7899999999999999999999999999 887643   357899999999999


Q ss_pred             cCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhh
Q 017490          185 FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTA  264 (370)
Q Consensus       185 lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~  264 (370)
                      +|.||+++|+++++|||+|++|||+..+..                ...    ..+.++++++++||+|++|+|++++|+
T Consensus       156 lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~----------------~~~----~~~~~l~ell~~aDvV~l~~Plt~~t~  215 (343)
T 2yq5_A          156 VGHIGSAVAEIFSAMGAKVIAYDVAYNPEF----------------EPF----LTYTDFDTVLKEADIVSLHTPLFPSTE  215 (343)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSSCCGGG----------------TTT----CEECCHHHHHHHCSEEEECCCCCTTTT
T ss_pred             cCHHHHHHHHHHhhCCCEEEEECCChhhhh----------------hcc----ccccCHHHHHhcCCEEEEcCCCCHHHH
Confidence            999999999999999999999999864310                011    123589999999999999999999999


Q ss_pred             cccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCC--CCCC-----------CcccCCCceEE
Q 017490          265 GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEP--FDPN-----------DPILKFKNVLI  331 (370)
Q Consensus       265 ~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP--l~~~-----------~pL~~~~nvil  331 (370)
                      ++|+++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++||  ++.+           +|||++|||++
T Consensus       216 ~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~l~~~~~pL~~~~nvil  295 (343)
T 2yq5_A          216 NMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVVI  295 (343)
T ss_dssp             TCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSCEEESCCTTGGGTTTCCSCCTTTSCHHHHHHTTCTTEEE
T ss_pred             HHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCCcEEEecccccCCCccccccccccccccchhHHhcCCCEEE
Confidence            9999999999999999999999999999999999999999999999999999  5555           48999999999


Q ss_pred             ccCCCCccHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 017490          332 TPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL  366 (370)
Q Consensus       332 TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~  366 (370)
                      |||+||+|.++++++.+.+++|+.+|++|+++.|.
T Consensus       296 TPHia~~t~ea~~~~~~~~~~ni~~~l~g~~~~~~  330 (343)
T 2yq5_A          296 TPHSAFYTETSIRNMVQICLTDQLTIAKGGRPRSI  330 (343)
T ss_dssp             CSSCTTCBHHHHHHHHHHHHHHHHHHHTTCCCTTB
T ss_pred             CCccccchHHHHHHHHHHHHHHHHHHHcCCCCCce
Confidence            99999999999999999999999999999998764

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=100.00  E-value=3.3e-67  Score=508.07  Aligned_cols=300  Identities=22%  Similarity=0.352  Sum_probs=264.7

Q ss_pred             cEEEEeCCCCCCchhhHHHHHhcCCCceeeeCCCCChhhhcCcceEEEEeCCCCCHHHHhcCCCCeEEEEeCcccCcc-c
Q 017490           37 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGV-D  115 (370)
Q Consensus        37 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~i-d  115 (370)
                      |||+++.+.. ....+...+.+.+|++++..++..    ...++|+++++  .++++++++ |+||||++.|+|+|+| |
T Consensus         4 mkil~~~~~~-~~~~~~~~l~~~~p~~~~~~~~~~----~~~~ad~~i~~--~~~~~~l~~-~~Lk~I~~~~aG~d~i~d   75 (315)
T 3pp8_A            4 MEIIFYHPTF-NAAWWVNALEKALPHARVREWKVG----DNNPADYALVW--QPPVEMLAG-RRLKAVFVLGAGVDAILS   75 (315)
T ss_dssp             EEEEEECSSS-CHHHHHHHHHHHSTTEEEEECCTT----CCSCCSEEEES--SCCHHHHTT-CCCSEEEESSSCCHHHHH
T ss_pred             eEEEEEcCCC-chHHHHHHHHHHCCCCEEEecCCC----CccCcEEEEEC--CCCHHHhCC-CCceEEEECCEecccccc
Confidence            7999998753 335677777788899988766442    34589998875  458999999 9999999999999999 7


Q ss_pred             -hhh---HhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEecCchhHH
Q 017490          116 -INA---ATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVE  191 (370)
Q Consensus       116 -~~~---~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~  191 (370)
                       +++   +.++||.|+|+|++  +++.+||||++++||++.|++..+++.+++|.|....+++++|+||||||+|.||++
T Consensus        76 ~~~a~~~~~~~gi~v~~~~~~--~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~l~g~tvGIiG~G~IG~~  153 (315)
T 3pp8_A           76 KLNAHPEMLDASIPLFRLEDT--GMGLQMQEYAVSQVLHWFRRFDDYQALKNQALWKPLPEYTREEFSVGIMGAGVLGAK  153 (315)
T ss_dssp             HHHHCTTSSCTTSCEEEC--C--CCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCCCCSTTCCEEEECCSHHHHH
T ss_pred             hhhhhhhhhcCCCEEEEcCCC--CccHHHHHHHHHHHHHHHhCChHHHHHHHhcccCCCCCCCcCCCEEEEEeeCHHHHH
Confidence             886   78899999999986  357899999999999999999999999999999877789999999999999999999


Q ss_pred             HHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHH
Q 017490          192 LAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSF  271 (370)
Q Consensus       192 vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~  271 (370)
                      +|+++++|||+|++|||++...                  +.+.......++++++++||+|++|+|++++|+++|+++.
T Consensus       154 vA~~l~~~G~~V~~~dr~~~~~------------------~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~  215 (315)
T 3pp8_A          154 VAESLQAWGFPLRCWSRSRKSW------------------PGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSEL  215 (315)
T ss_dssp             HHHHHHTTTCCEEEEESSCCCC------------------TTCEEEESHHHHHHHHHTCSEEEECCCCCGGGTTCBSHHH
T ss_pred             HHHHHHHCCCEEEEEcCCchhh------------------hhhhhhcccCCHHHHHhhCCEEEEecCCchhhhhhccHHH
Confidence            9999999999999999876541                  1111111235799999999999999999999999999999


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceEEccCCCCccHHHHHHHHHHHH
Q 017490          272 LSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVG  351 (370)
Q Consensus       272 l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~  351 (370)
                      |+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++||+|+++|||++|||++|||+||+|.+  .++.+.++
T Consensus       216 l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~--~~~~~~~~  293 (315)
T 3pp8_A          216 LDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHIAAVTRP--AEAIDYIS  293 (315)
T ss_dssp             HTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGGCTTEEECSSCSSCCCH--HHHHHHHH
T ss_pred             HhhCCCCCEEEECCCChhhhHHHHHHHHHhCCccEEEcCCCCCCCCCCCChhhcCCCEEECCCCCcccHH--HHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999985  57999999


Q ss_pred             HHHHHHHcCCCCCCc
Q 017490          352 DVALQLHAGTPLTGL  366 (370)
Q Consensus       352 ~ni~~~~~g~~~~~~  366 (370)
                      +|+.+|++|+++.|+
T Consensus       294 ~ni~~~~~G~~~~~~  308 (315)
T 3pp8_A          294 RTITQLEKGEPVTGQ  308 (315)
T ss_dssp             HHHHHHHHTCCCCCB
T ss_pred             HHHHHHHcCCCCCce
Confidence            999999999998754

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=100.00  E-value=6e-67  Score=510.49  Aligned_cols=306  Identities=27%  Similarity=0.395  Sum_probs=237.0

Q ss_pred             CccEEEEeCCCCCCchhhHHHHHhcCCCceee-eCCCCChhhhcCcceEEEEe-CCCCCHHHHhcCCCCeEEEEeCcccC
Q 017490           35 NITRVLFCGPHFPASHNYTKEYLQNYPSIQVD-VVPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLE  112 (370)
Q Consensus        35 ~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d  112 (370)
                      .+++||++.+..+.   ....+.+.+...... ..+.+++.+.++++|+++++ ..++++++++++|+||||++.|+|+|
T Consensus        29 ~~~~vl~~~~~~~~---~~~~L~~~~~v~~~~~~~~~~~~~~~~~~~d~li~~~~~~i~~~~l~~~p~Lk~I~~~g~G~d  105 (340)
T 4dgs_A           29 VKPDLLLVEPMMPF---VMDELQRNYSVHRLYQAADRPALEAALPSIRAVATGGGAGLSNEWMEKLPSLGIIAINGVGTD  105 (340)
T ss_dssp             ----CEECSCCCHH---HHHTHHHHSCCEETTCGGGHHHHHHHGGGCCEEEEETTTCBCHHHHHHCSSCCEEEEESSCCT
T ss_pred             CCCEEEEECCCCHH---HHHHHhcCCcEEEeCCCCCHHHHHHHhCCcEEEEEcCCCCCCHHHHhhCCCCEEEEECCCCcc
Confidence            35689999875432   222222223221111 12234555666899998876 46899999999999999999999999


Q ss_pred             ccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC----CCcccccCceEEEEecCch
Q 017490          113 GVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV----PTGETLLGKTVFILGFGNI  188 (370)
Q Consensus       113 ~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~----~~~~~l~g~tvGIiGlG~I  188 (370)
                      +||+++|+++||.|+|+||+   |+.+||||++++||+++|++..+++.+++|.|..    +.+++|+|+||||||+|.|
T Consensus       106 ~id~~~a~~~gI~V~n~pg~---~~~~vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktiGIIGlG~I  182 (340)
T 4dgs_A          106 KVDLARARRRNIDVTTTPGV---LADDVADLGIALMLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQI  182 (340)
T ss_dssp             TBCHHHHHHTTCEEECCCSS---SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCC------CCCCCCTTCEEEEECCSHH
T ss_pred             ccCHHHHHhCCEEEEECCCC---CcchHHHHHHHHHHHHHhChHHHHHHHhcCCcccccCcCccccccCCEEEEECCCHH
Confidence            99999999999999999998   8899999999999999999999999999999964    2468999999999999999


Q ss_pred             hHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccC
Q 017490          189 GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVN  268 (370)
Q Consensus       189 G~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~  268 (370)
                      |+++|+++++|||+|++|||++.+.                  ....   ...++++++++||+|++|+|++++|+++++
T Consensus       183 G~~vA~~l~~~G~~V~~~dr~~~~~------------------~~~~---~~~sl~ell~~aDvVil~vP~t~~t~~li~  241 (340)
T 4dgs_A          183 GRALASRAEAFGMSVRYWNRSTLSG------------------VDWI---AHQSPVDLARDSDVLAVCVAASAATQNIVD  241 (340)
T ss_dssp             HHHHHHHHHTTTCEEEEECSSCCTT------------------SCCE---ECSSHHHHHHTCSEEEECC----------C
T ss_pred             HHHHHHHHHHCCCEEEEEcCCcccc------------------cCce---ecCCHHHHHhcCCEEEEeCCCCHHHHHHhh
Confidence            9999999999999999999976431                  0010   235899999999999999999999999999


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceEEccCCCCccHHHHHHHHH
Q 017490          269 KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAK  348 (370)
Q Consensus       269 ~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~  348 (370)
                      ++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++||+++ +|||++|||++|||+||+|.+++.++.+
T Consensus       242 ~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDVf~~EP~~~-~~L~~~~nvilTPHia~~t~e~~~~~~~  320 (340)
T 4dgs_A          242 ASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIR-SEFHTTPNTVLMPHQGSATVETRMAMGK  320 (340)
T ss_dssp             HHHHHHTTTTCEEEECSCC--------------CCSSEEEESCCSSSSSCC-SHHHHSSSEEECSSCSSCCHHHHHHHHH
T ss_pred             HHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCceEEEeCCcCCCCCCc-cchhhCCCEEEcCcCCcCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999865 5999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCCccccC
Q 017490          349 VVGDVALQLHAGTPLTGLEFVN  370 (370)
Q Consensus       349 ~~~~ni~~~~~g~~~~~~~~~~  370 (370)
                      .+++|+.+|++|+++.+.  ||
T Consensus       321 ~~~~nl~~~~~g~~~~~~--Vn  340 (340)
T 4dgs_A          321 LVLANLAAHFAGEKAPNT--VN  340 (340)
T ss_dssp             HHHHHHHHHHTTSCCTTB--C-
T ss_pred             HHHHHHHHHHcCCCCCCC--cC
Confidence            999999999999998864  65

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=100.00  E-value=2.7e-66  Score=508.17  Aligned_cols=295  Identities=29%  Similarity=0.452  Sum_probs=260.8

Q ss_pred             HHHHHhcCCCceeeeC-----CCCChhhhcCcceEEEEeC---CCCCHHHHhcCCCCeEEEEeCcccCccchhhHhcCCe
Q 017490           53 TKEYLQNYPSIQVDVV-----PISDVPDVIANYHLCVVKT---MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGI  124 (370)
Q Consensus        53 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~d~~i~~~---~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI  124 (370)
                      ..++++.. ++++...     +.+++.+.++++|++++..   .++++++|+++|+||+|++.|+|+|+||+++|+++||
T Consensus        32 ~~~~L~~~-g~ev~~~~~~~~~~~~~~~~~~~ad~li~~~~~~~~~~~~~l~~~p~Lk~i~~~g~G~d~id~~~a~~~gI  110 (351)
T 3jtm_A           32 IRDWLESQ-GHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGL  110 (351)
T ss_dssp             CHHHHHHT-TCEEEEESCCSSTTSHHHHHTTTCSEEEECTTSCCCBCHHHHHHCSSCCEEEESSSCCTTBCHHHHHHTTC
T ss_pred             HHHHHHHC-CCEEEEeCCCCCCHHHHHHHhCCCEEEEEccCCCCCCCHHHHhhCCCCeEEEEeCeeecccCHHHHHhcCe
Confidence            34555543 4554422     2346778899999988753   4689999999999999999999999999999999999


Q ss_pred             EEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC----CCcccccCceEEEEecCchhHHHHHHhccCC
Q 017490          125 KVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV----PTGETLLGKTVFILGFGNIGVELAKRLRPFG  200 (370)
Q Consensus       125 ~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~----~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G  200 (370)
                      .|+|+||+   |+.+||||++++||++.|++..+++.+++|.|..    ..+.+|+|+||||||+|.||+++|+++++||
T Consensus       111 ~V~n~~g~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIG~G~IG~~vA~~l~~~G  187 (351)
T 3jtm_A          111 TVAEVTGS---NVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFG  187 (351)
T ss_dssp             EEEECTTT---THHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHGGGC
T ss_pred             eEEECCCc---CchHHHHHHHHHHHHHhhCcHHHHHHHHcCCCccccccCCcccccCCEEeEEEeCHHHHHHHHHHHHCC
Confidence            99999998   8899999999999999999999999999999973    2468999999999999999999999999999


Q ss_pred             CEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCC
Q 017490          201 VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKG  278 (370)
Q Consensus       201 ~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~g  278 (370)
                      |+|++|||++.+..                  ...+.+  ...++++++++||+|++|+|++++|+++|+++.|+.||+|
T Consensus       188 ~~V~~~dr~~~~~~------------------~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~g  249 (351)
T 3jtm_A          188 CNLLYHDRLQMAPE------------------LEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKG  249 (351)
T ss_dssp             CEEEEECSSCCCHH------------------HHHHHCCEECSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTT
T ss_pred             CEEEEeCCCccCHH------------------HHHhCCCeEcCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCC
Confidence            99999998754311                  111111  2358999999999999999999999999999999999999


Q ss_pred             cEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceEEccCCCCccHHHHHHHHHHHHHHHHHHH
Q 017490          279 SLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLH  358 (370)
Q Consensus       279 ailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~~  358 (370)
                      ++|||+|||+++|+++|+++|++|+|+||+||||++||+|+++|||++|||++|||+||+|.+++.++++.+++|+.+|+
T Consensus       250 ailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~  329 (351)
T 3jtm_A          250 VLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLRYAAGTKDMLERYF  329 (351)
T ss_dssp             EEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEECcCchhhCHHHHHHHHHhCCccEEEeCCCCCCCCCCCChhhcCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCcccc
Q 017490          359 AGTPLTGLEFV  369 (370)
Q Consensus       359 ~g~~~~~~~~~  369 (370)
                      +|++....++|
T Consensus       330 ~g~~~~~~~~i  340 (351)
T 3jtm_A          330 KGEDFPTENYI  340 (351)
T ss_dssp             HTCCCCGGGEE
T ss_pred             cCCCCCCceEE
Confidence            99974444443

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=100.00  E-value=2.2e-66  Score=516.80  Aligned_cols=308  Identities=27%  Similarity=0.382  Sum_probs=261.9

Q ss_pred             CCCccEEEEeCCCCCCchhhHHHHHhcC--CCceee--eCCCCChhhhcCcceEEEEe-CCCCCHHHHhcCCCCeEEEEe
Q 017490           33 DKNITRVLFCGPHFPASHNYTKEYLQNY--PSIQVD--VVPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQF  107 (370)
Q Consensus        33 ~~~~~~vl~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~  107 (370)
                      ++.+|||+++.+..+..    .+.++..  ..++..  ..+++++.+.++++|+++++ ..++++++|+++|+||+|++.
T Consensus        12 ~~~~~kIl~~~~i~~~~----~~~l~~~g~~~v~~~~~~~~~~~l~~~~~~~d~l~v~~~~~i~~~~l~~~p~Lk~I~~~   87 (416)
T 3k5p_A           12 SRDRINVLLLEGISQTA----VEYFKSSGYTNVTHLPKALDKADLIKAISSAHIIGIRSRTQLTEEIFAAANRLIAVGCF   87 (416)
T ss_dssp             CGGGSCEEECSCCCHHH----HHHHHHTTCCCEEECSSCCCHHHHHHHHTTCSEEEECSSCCBCHHHHHHCTTCCEEEEC
T ss_pred             CCCCcEEEEECCCCHHH----HHHHHHCCCcEEEECCCCCCHHHHHHHccCCEEEEEcCCCCCCHHHHHhCCCcEEEEEC
Confidence            34478999998764332    2344332  233322  13445677888999988665 478999999999999999999


Q ss_pred             CcccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCC--CcccccCceEEEEec
Q 017490          108 GVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--TGETLLGKTVFILGF  185 (370)
Q Consensus       108 ~~G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~--~~~~l~g~tvGIiGl  185 (370)
                      |+|+|+||+++|+++||.|+|+||+   |+.+||||++++||+++|++..+++.+++|.|...  .+.+++||||||||+
T Consensus        88 ~~G~d~IDl~~a~~~GI~V~n~p~~---n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~~~~~~~el~gktvGIIGl  164 (416)
T 3k5p_A           88 SVGTNQVELKAARKRGIPVFNAPFS---NTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTAIGSREVRGKTLGIVGY  164 (416)
T ss_dssp             SSCCTTBCHHHHHHTTCCEECCSST---THHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTCCCSTTCEEEEECC
T ss_pred             ccccCccCHHHHHhcCcEEEeCCCc---ccHHHHHHHHHHHHHHhcccHHHHHhhhcccccccCCCCccCCCCEEEEEee
Confidence            9999999999999999999999998   88999999999999999999999999999999753  478999999999999


Q ss_pred             CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhhc
Q 017490          186 GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAG  265 (370)
Q Consensus       186 G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~  265 (370)
                      |.||+.+|+++++|||+|++||++.....                 ...   ....++++++++||+|++|+|++++|++
T Consensus       165 G~IG~~vA~~l~~~G~~V~~yd~~~~~~~-----------------~~~---~~~~sl~ell~~aDvV~lhvPlt~~T~~  224 (416)
T 3k5p_A          165 GNIGSQVGNLAESLGMTVRYYDTSDKLQY-----------------GNV---KPAASLDELLKTSDVVSLHVPSSKSTSK  224 (416)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEECTTCCCCB-----------------TTB---EECSSHHHHHHHCSEEEECCCC-----C
T ss_pred             CHHHHHHHHHHHHCCCEEEEECCcchhcc-----------------cCc---EecCCHHHHHhhCCEEEEeCCCCHHHhh
Confidence            99999999999999999999998743310                 001   1236899999999999999999999999


Q ss_pred             ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCC----CcccCCCceEEccCCCCccHH
Q 017490          266 IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPN----DPILKFKNVLITPHVGGVTEH  341 (370)
Q Consensus       266 li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~----~pL~~~~nvilTPHia~~t~~  341 (370)
                      +|+++.|+.||+|++|||+|||+++|++||+++|++|+++||+||||++||++++    +|||++|||++|||+||+|.+
T Consensus       225 li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~g~i~gAalDVf~~EP~~~~~~~~~pL~~~~nvilTPHig~~T~e  304 (416)
T 3k5p_A          225 LITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEE  304 (416)
T ss_dssp             CBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEECCCSSCCSSTTSCCCCTTTTCTTEEECCSCTTCCHH
T ss_pred             hcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCccEEEeCCCCCCCCCcccccchhHhcCCCEEECCCCCCCCHH
Confidence            9999999999999999999999999999999999999999999999999998775    799999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHc-CCCCCCcc
Q 017490          342 SYRSMAKVVGDVALQLHA-GTPLTGLE  367 (370)
Q Consensus       342 ~~~~~~~~~~~ni~~~~~-g~~~~~~~  367 (370)
                      ++++++..+++|+.+|++ |.+...+|
T Consensus       305 a~~~~~~~~~~nl~~~l~~g~~~~~Vn  331 (416)
T 3k5p_A          305 AQERIGTEVTRKLVEYSDVGSTVGAVN  331 (416)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCTTBSS
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCCceee
Confidence            999999999999999985 55554444

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=100.00  E-value=9.4e-66  Score=504.71  Aligned_cols=303  Identities=24%  Similarity=0.329  Sum_probs=262.9

Q ss_pred             cEEEEeCCCCCCchhhHHHHHhcCCCceeeeCC-----CCChhhhcCcceEEEEe--CCCCCHHHHhcCCCCeEEEEeCc
Q 017490           37 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVP-----ISDVPDVIANYHLCVVK--TMRLDSNCISRANQMKLIMQFGV  109 (370)
Q Consensus        37 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~d~~i~~--~~~~~~~~l~~~~~Lk~I~~~~~  109 (370)
                      |||++++........ ...+ +...++++..++     ++++.+.++++|+++++  ..++++++++++|+||+|++.|+
T Consensus         3 mki~~~d~~~~~~~~-~~~~-~~l~~~~v~~~~~~~~~~~~l~~~~~~ad~li~~~~~~~~~~~~l~~~~~Lk~I~~~g~   80 (352)
T 3gg9_A            3 LKIAVLDDYQDAVRK-LDCF-SLLQDHEVKVFNNTVKGVGQLAARVADVEALVLIRERTRVTRQLLDRLPKLKIISQTGR   80 (352)
T ss_dssp             CEEEECCCTTCCGGG-SGGG-GGGTTSEEEECCSCCCSHHHHHHHTTTCSEEEECTTSSCBCHHHHTTCTTCCEEEESSC
T ss_pred             eEEEEEcCccccchh-hhhh-hhhcCceEEEecCCCCCHHHHHHHhcCCeEEEEeCCCCCCCHHHHhhCCCCeEEEEeCc
Confidence            799998865432211 1111 112234444332     24567888999998873  47999999999999999999999


Q ss_pred             cc----CccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCC------------Ccc
Q 017490          110 GL----EGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP------------TGE  173 (370)
Q Consensus       110 G~----d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~------------~~~  173 (370)
                      |+    |+||+++|+++||.|+|+||+ +   .+||||++++||++.|++..+++.+++|.|...            .++
T Consensus        81 G~~~~~d~id~~~a~~~gI~V~n~pg~-~---~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~~~~  156 (352)
T 3gg9_A           81 VSRDAGGHIDLEACTDKGVVVLEGKGS-P---VAPAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGR  156 (352)
T ss_dssp             CCCSSSCSBCHHHHHHHTCEEECCCCC-S---HHHHHHHHHHHHHHHTTHHHHHHHHHTTCTTCCCCCCTTSCTTTTSBC
T ss_pred             ccCCccCcccHHHHHhCCeEEEECCCC-c---HHHHHHHHHHHHHHHhhHHHHHHHHHcCCCCcccccccccccccccCc
Confidence            99    999999999999999999997 4   799999999999999999999999999999752            478


Q ss_pred             cccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCC
Q 017490          174 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKAD  251 (370)
Q Consensus       174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aD  251 (370)
                      +|+|+||||||+|.||+++|+++++|||+|++||++....                   .....+  ...++++++++||
T Consensus       157 ~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-------------------~~~~~g~~~~~~l~ell~~aD  217 (352)
T 3gg9_A          157 VLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSKE-------------------RARADGFAVAESKDALFEQSD  217 (352)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHHH-------------------HHHHTTCEECSSHHHHHHHCS
T ss_pred             cCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCHH-------------------HHHhcCceEeCCHHHHHhhCC
Confidence            9999999999999999999999999999999999874221                   001111  1248999999999


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceEE
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLI  331 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvil  331 (370)
                      +|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++||+|+++|||++|||++
T Consensus       218 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvil  297 (352)
T 3gg9_A          218 VLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCIC  297 (352)
T ss_dssp             EEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEECCCSSSCCCSCCGGGGCTTEEE
T ss_pred             EEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEecccCCCCCCCCChhhcCCCEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCccHHHHHHHHHHHHHHHHHHHcCCCCC
Q 017490          332 TPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLT  364 (370)
Q Consensus       332 TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~  364 (370)
                      |||+||+|.++++++.+.+++|+.+|++|+|+.
T Consensus       298 TPHia~~t~e~~~~~~~~~~~ni~~~~~G~p~~  330 (352)
T 3gg9_A          298 TPHIGYVERESYEMYFGIAFQNILDILQGNVDS  330 (352)
T ss_dssp             CCSCTTCBHHHHHHHHHHHHHHHHHHHTTCCTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence            999999999999999999999999999998753

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=100.00  E-value=3.2e-65  Score=498.30  Aligned_cols=306  Identities=20%  Similarity=0.307  Sum_probs=266.0

Q ss_pred             cEEEEeCCCCCCchhhHHHHHhcCCCceeeeCC---CCChhhhcCcceEEEEe-CCCCCHHHHhcCCC--CeEEEEeCcc
Q 017490           37 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVP---ISDVPDVIANYHLCVVK-TMRLDSNCISRANQ--MKLIMQFGVG  110 (370)
Q Consensus        37 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~--Lk~I~~~~~G  110 (370)
                      |||+++... +....+...+.+.+|++++...+   .+++.+.++++|+++++ ..++++++++++|+  ||||++.|+|
T Consensus         2 mkil~~~~~-~~~~~~~~~l~~~~p~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G   80 (333)
T 1j4a_A            2 TKIFAYAIR-EDEKPFLKEWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVG   80 (333)
T ss_dssp             CEEEECSCC-GGGHHHHHHHHHTCTTSEEEECSSCCCTTTGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSC
T ss_pred             cEEEEEecC-ccCHHHHHHHHhhCCCcEEEECCCCCcHHHHHHhcCCcEEEEcCCCCCCHHHHHhccccCCeEEEECCcc
Confidence            688887543 22233444444556666664332   35667788899998876 46899999999988  9999999999


Q ss_pred             cCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccC--CCCcccccCceEEEEecCch
Q 017490          111 LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG--VPTGETLLGKTVFILGFGNI  188 (370)
Q Consensus       111 ~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~--~~~~~~l~g~tvGIiGlG~I  188 (370)
                      +|+||+++|+++||.|+|+||+   |+.+||||++++||++.|++..+++.+++|.|.  ...+.+++|++|||||+|.|
T Consensus        81 ~d~id~~~~~~~gi~v~n~p~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~l~g~~vgIiG~G~I  157 (333)
T 1j4a_A           81 VDNIDMAKAKELGFQITNVPVY---SPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHI  157 (333)
T ss_dssp             CTTBCHHHHHHTTCEEECCCCS---CHHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTTCCBCCGGGSEEEEECCSHH
T ss_pred             cccccHHHHHhCCCEEEeCCCC---CchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCCcccccCCCCEEEEEccCHH
Confidence            9999999999999999999998   789999999999999999999999999999985  33578999999999999999


Q ss_pred             hHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCC-CCHHHHHhcCCEEEEeccCChhhhccc
Q 017490          189 GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCH-EDIFEFASKADVVVCCLSLNKQTAGIV  267 (370)
Q Consensus       189 G~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~ell~~aDiV~l~lP~t~~t~~li  267 (370)
                      |+.+|+++++|||+|++||++..+. .               .+.    ... .++++++++||+|++|+|++++|++++
T Consensus       158 G~~~A~~l~~~G~~V~~~d~~~~~~-~---------------~~~----~~~~~~l~ell~~aDvV~l~~p~~~~t~~li  217 (333)
T 1j4a_A          158 GQVFMQIMEGFGAKVITYDIFRNPE-L---------------EKK----GYYVDSLDDLYKQADVISLHVPDVPANVHMI  217 (333)
T ss_dssp             HHHHHHHHHHTTCEEEEECSSCCHH-H---------------HHT----TCBCSCHHHHHHHCSEEEECSCCCGGGTTCB
T ss_pred             HHHHHHHHHHCCCEEEEECCCcchh-H---------------Hhh----CeecCCHHHHHhhCCEEEEcCCCcHHHHHHH
Confidence            9999999999999999999976431 0               011    122 379999999999999999999999999


Q ss_pred             CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCC--CCCCC-----------cccCCCceEEccC
Q 017490          268 NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEP--FDPND-----------PILKFKNVLITPH  334 (370)
Q Consensus       268 ~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP--l~~~~-----------pL~~~~nvilTPH  334 (370)
                      +++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++||  +|+++           |||++|||++|||
T Consensus       218 ~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~l~~~~~~~~~~~p~~~~L~~~~nvilTPH  297 (333)
T 1j4a_A          218 NDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPK  297 (333)
T ss_dssp             SHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTCTTTTTSBCTTSCCSCHHHHHHHHCTTEEECSS
T ss_pred             hHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCccccccccccCCccchhhHHhCCCEEECCc
Confidence            9999999999999999999999999999999999999999999999999  45554           6999999999999


Q ss_pred             CCCccHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 017490          335 VGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL  366 (370)
Q Consensus       335 ia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~  366 (370)
                      +||+|.++..++.+.+++|+.+|++|+++.|.
T Consensus       298 ia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~  329 (333)
T 1j4a_A          298 TAFYTTHAVRNMVVKAFDNNLELVEGKEAETP  329 (333)
T ss_dssp             CTTCBHHHHHHHHHHHHHHHHHHHTTCCCSSB
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence            99999999999999999999999999988654

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=100.00  E-value=2.3e-65  Score=503.12  Aligned_cols=267  Identities=19%  Similarity=0.337  Sum_probs=240.8

Q ss_pred             hcCcceEEEEeCCCCCHHHHhcCCCCeEEEEe-CcccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHh
Q 017490           76 VIANYHLCVVKTMRLDSNCISRANQMKLIMQF-GVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK  154 (370)
Q Consensus        76 ~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~-~~G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~  154 (370)
                      .+.++++++ ...++++++|+++|+||+|++. |+|+|+||+++|+++||.|+|+||+   |+.+||||++++||++.|+
T Consensus        73 ~~~~~~~i~-~~~~i~~~~l~~~p~Lk~I~~~~~~G~d~iD~~~a~~~GI~V~n~~~~---~~~~vAE~~l~l~L~~~R~  148 (365)
T 4hy3_A           73 ILGRARYII-GQPPLSAETLARMPALRSILNVESNLLNNMPYEVLFQRGIHVVTTGQV---FAEPVAEIGLGFALALARG  148 (365)
T ss_dssp             HHHHEEEEE-ECCCCCHHHHTTCTTCCEEECCSSSCCSCSCTTHHHHSCCEEEECGGG---GHHHHHHHHHHHHHHHHHT
T ss_pred             hhCCeEEEE-eCCCCCHHHHhhCCCCeEEEEecccccCcccHHHHhcCCeEEEeCCCc---cchHHHHHHHHHHHHHHhc
Confidence            345677766 4579999999999999999975 8999999999999999999999998   7899999999999999999


Q ss_pred             HHHHHHHHHhcc--cCC---CCcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccc
Q 017490          155 QNEMRMAIEQKK--LGV---PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGI  229 (370)
Q Consensus       155 ~~~~~~~~~~~~--~~~---~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~  229 (370)
                      +..+++.+++|.  |..   ..+.+++|+||||||+|.||+++|+++++|||+|++||++....                
T Consensus       149 ~~~~~~~~r~g~~~w~~~~~~~~~~l~gktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~~~----------------  212 (365)
T 4hy3_A          149 IVDADIAFQEGTELWGGEGNASARLIAGSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPRS----------------  212 (365)
T ss_dssp             TTHHHHHHHHTCCCCSSSSTTSCCCSSSSEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSCHH----------------
T ss_pred             hhHHHHHHHcCCccccccccccccccCCCEEEEecCCcccHHHHHhhhhCCCEEEEECCCCCHH----------------
Confidence            999999999998  432   35789999999999999999999999999999999999875321                


Q ss_pred             ccccccccC-CCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEE
Q 017490          230 IDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLG  308 (370)
Q Consensus       230 ~~~~~~~~~-~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~  308 (370)
                         .....+ ...++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|++||+++|++|+|+ |+
T Consensus       213 ---~~~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~-aa  288 (365)
T 4hy3_A          213 ---MLEENGVEPASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSGHIV-AA  288 (365)
T ss_dssp             ---HHHHTTCEECCHHHHHHSCSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSE-EE
T ss_pred             ---HHhhcCeeeCCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCCce-EE
Confidence               011111 2468999999999999999999999999999999999999999999999999999999999999999 89


Q ss_pred             EecCCCCCCCCCCcccCCCceEEccCCCCccHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 017490          309 IDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL  366 (370)
Q Consensus       309 lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~  366 (370)
                      ||||++||+|+++|||++|||++|||+||+|.+++.++.+.+++|+.+|++|+++.+.
T Consensus       289 LDV~~~EPl~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~G~~~~~~  346 (365)
T 4hy3_A          289 SDVYPEEPLPLDHPVRSLKGFIRSAHRAGALDSAFKKMGDMVLEDMDLMDRGLPPMRC  346 (365)
T ss_dssp             ESCCSSSSCCTTCGGGTCTTEEECCSCSSCCHHHHHHHHHHHHHHHHHHHTTCCCCSS
T ss_pred             eeCCCCCCCCCCChhhcCCCEEECCccccCHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence            9999999999999999999999999999999999999999999999999999998754

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=100.00  E-value=6e-65  Score=507.39  Aligned_cols=304  Identities=26%  Similarity=0.345  Sum_probs=255.2

Q ss_pred             CccEEEEeCCCCCCchhhHHHHHhcCC--Cceee--eCCCCChhhhcCcceEEEEe-CCCCCHHHHhcCCCCeEEEEeCc
Q 017490           35 NITRVLFCGPHFPASHNYTKEYLQNYP--SIQVD--VVPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGV  109 (370)
Q Consensus        35 ~~~~vl~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~  109 (370)
                      .||||+++.+..+.    ..+.++...  .+.+.  ..+++++.+.++++|+++++ ..++++++|+++|+||+|++.|+
T Consensus         3 ~~~kil~~~~~~~~----~~~~l~~~~~~~v~~~~~~~~~~~l~~~~~~~d~l~~~~~~~~~~~~l~~~~~Lk~I~~~~~   78 (404)
T 1sc6_A            3 DKIKFLLVEGVHQK----ALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFAI   78 (404)
T ss_dssp             SSCCEEECSCCCHH----HHHHHHHTTCCCEEECSSCCCHHHHHHHTTSCSEEEECSSCCBCHHHHHHCSSCCEEEECSS
T ss_pred             CceEEEEeCCCCHH----HHHHHHhCCCcEEEEcCCCCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhCCCCcEEEECCc
Confidence            35789998764322    223443321  23322  23445677788999988765 46899999999999999999999


Q ss_pred             ccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC--CCcccccCceEEEEecCc
Q 017490          110 GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PTGETLLGKTVFILGFGN  187 (370)
Q Consensus       110 G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~--~~~~~l~g~tvGIiGlG~  187 (370)
                      |+|+||+++|+++||.|+|+||+   |+.+||||++++||+++|+++.++..+++|.|..  ..+.+++|||+||||+|.
T Consensus        79 G~d~iD~~~a~~~GI~V~n~p~~---n~~~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~~~~~~~el~gktlGiIGlG~  155 (404)
T 1sc6_A           79 GTNQVDLDAAAKRGIPVFNAPFS---NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGH  155 (404)
T ss_dssp             CCTTBCHHHHHHTTCCEECCTTT---THHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CCCSTTCEEEEECCSH
T ss_pred             ccCccCHHHHHhCCCEEEecCcc---cHHHHHHHHHHHHHHHHhChHHHHHHHHcCCccccCCCccccCCCEEEEEeECH
Confidence            99999999999999999999998   8899999999999999999999999999999964  347899999999999999


Q ss_pred             hhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhhccc
Q 017490          188 IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIV  267 (370)
Q Consensus       188 IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li  267 (370)
                      ||+.+|+++++|||+|++|||+....                 .....   ...++++++++||+|++|+|++++|+++|
T Consensus       156 IG~~vA~~l~~~G~~V~~~d~~~~~~-----------------~~~~~---~~~~l~ell~~aDvV~l~~P~t~~t~~li  215 (404)
T 1sc6_A          156 IGTQLGILAESLGMYVYFYDIENKLP-----------------LGNAT---QVQHLSDLLNMSDVVSLHVPENPSTKNMM  215 (404)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSCCCC-----------------CTTCE---ECSCHHHHHHHCSEEEECCCSSTTTTTCB
T ss_pred             HHHHHHHHHHHCCCEEEEEcCCchhc-----------------cCCce---ecCCHHHHHhcCCEEEEccCCChHHHHHh
Confidence            99999999999999999999865331                 00011   13489999999999999999999999999


Q ss_pred             CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCC----CCcccCCCceEEccCCCCccHHHH
Q 017490          268 NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDP----NDPILKFKNVLITPHVGGVTEHSY  343 (370)
Q Consensus       268 ~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~----~~pL~~~~nvilTPHia~~t~~~~  343 (370)
                      +++.|+.||+|++|||+|||+++|+++|+++|++|+++||+||||++||++.    ++|||++|||++|||+||+|.+++
T Consensus       216 ~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gA~lDVf~~EP~~~~~~~~~pL~~~~nvilTPHi~~~T~ea~  295 (404)
T 1sc6_A          216 GAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQ  295 (404)
T ss_dssp             CHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC---------CTTTGGGTTCTTEEEECCCSCCSHHHH
T ss_pred             hHHHHhhcCCCeEEEECCCChHHhHHHHHHHHHcCCccEEEEeecCCCCCCccccccchhhcCCCEEECCCCCCCcHHHH
Confidence            9999999999999999999999999999999999999999999999999864    479999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCCCC
Q 017490          344 RSMAKVVGDVALQLHAGTPLTG  365 (370)
Q Consensus       344 ~~~~~~~~~ni~~~~~g~~~~~  365 (370)
                      ++++..+++|+.+|++|+++.+
T Consensus       296 ~~~~~~~~~nl~~~l~g~~~~~  317 (404)
T 1sc6_A          296 ENIGLEVAGKLIKYSDNGSTLS  317 (404)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCTT
T ss_pred             HHHHHHHHHHHHHHHcCCCCcc
Confidence            9999999999999998876543

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=1.2e-64  Score=494.18  Aligned_cols=305  Identities=21%  Similarity=0.288  Sum_probs=262.2

Q ss_pred             cEEEEeCCCCCCchhhHHHHHhcCCCceeeeC---CCCChhhhcCcceEEEEe-CCCCCHHHHhcCCC--CeEEEEeCcc
Q 017490           37 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVV---PISDVPDVIANYHLCVVK-TMRLDSNCISRANQ--MKLIMQFGVG  110 (370)
Q Consensus        37 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~--Lk~I~~~~~G  110 (370)
                      |||+++... +....+...+.+.+ ++++...   ..+++.+.++++|+++++ ..++++++++++|+  ||||++.|+|
T Consensus         1 Mkil~~~~~-~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G   78 (333)
T 1dxy_A            1 MKIIAYGAR-VDEIQYFKQWAKDT-GNTLEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVG   78 (333)
T ss_dssp             CEEEECSCC-TTTHHHHHHHHHHH-CCEEEECSSCCCTTGGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSC
T ss_pred             CEEEEEecc-ccCHHHHHHHHHhC-CeEEEEcCCCChHHHHHHhcCCeEEEEcCCCCCCHHHHHhCcccCceEEEEcCcc
Confidence            578887543 22233444443332 4444322   245667778999998876 46899999999988  9999999999


Q ss_pred             cCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccC---CCCcccccCceEEEEecCc
Q 017490          111 LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG---VPTGETLLGKTVFILGFGN  187 (370)
Q Consensus       111 ~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~---~~~~~~l~g~tvGIiGlG~  187 (370)
                      +|+||+++|+++||.|+|+||+   |+.+||||++++||++.|++..+++.+++|.|.   ...+.+++|+||||||+|.
T Consensus        79 ~d~id~~~~~~~gI~v~n~p~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIiG~G~  155 (333)
T 1dxy_A           79 TDNIDMTAMKQYGIRLSNVPAY---SPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGH  155 (333)
T ss_dssp             CTTBCHHHHHHTTCEEECCTTS---CHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCCCCCCGGGSEEEEECCSH
T ss_pred             cCccCHHHHHhCCCEEEeCCCC---CchHHHHHHHHHHHHHhhhHHHHHHHHHcCCcccccCCCccCCCCCEEEEECcCH
Confidence            9999999999999999999998   789999999999999999999999999999873   3467899999999999999


Q ss_pred             hhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhhccc
Q 017490          188 IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIV  267 (370)
Q Consensus       188 IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li  267 (370)
                      ||+.+|+++++|||+|++||++..+. .               .+.    ..+.++++++++||+|++|+|++++|++++
T Consensus       156 IG~~~A~~l~~~G~~V~~~d~~~~~~-~---------------~~~----~~~~~l~ell~~aDvV~~~~P~~~~t~~li  215 (333)
T 1dxy_A          156 IGQVAIKLFKGFGAKVIAYDPYPMKG-D---------------HPD----FDYVSLEDLFKQSDVIDLHVPGIEQNTHII  215 (333)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSCCSS-C---------------CTT----CEECCHHHHHHHCSEEEECCCCCGGGTTSB
T ss_pred             HHHHHHHHHHHCCCEEEEECCCcchh-h---------------Hhc----cccCCHHHHHhcCCEEEEcCCCchhHHHHh
Confidence            99999999999999999999976541 0               011    123489999999999999999999999999


Q ss_pred             CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCC--C--------CC---CcccCCCceEEccC
Q 017490          268 NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPF--D--------PN---DPILKFKNVLITPH  334 (370)
Q Consensus       268 ~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl--~--------~~---~pL~~~~nvilTPH  334 (370)
                      +++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++||+  +        ++   +|||++|||++|||
T Consensus       216 ~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~pL~~~~nvi~TPH  295 (333)
T 1dxy_A          216 NEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPH  295 (333)
T ss_dssp             CHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEECSS
T ss_pred             CHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCccEEEEecCCCCCCcccccccccccCccchhHHhcCCCEEECCc
Confidence            99999999999999999999999999999999999999999999999993  2        12   58999999999999


Q ss_pred             CCCccHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 017490          335 VGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL  366 (370)
Q Consensus       335 ia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~  366 (370)
                      +||+|.++..++.+.+++|+.+|++|+++.|.
T Consensus       296 ia~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~  327 (333)
T 1dxy_A          296 IAYYTETAVHNMVYFSLQHLVDFLTKGETSTE  327 (333)
T ss_dssp             CTTCSHHHHHHHHHHHHHHHHHHHHHSCCTTE
T ss_pred             cccChHHHHHHHHHHHHHHHHHHHcCCCCCce
Confidence            99999999999999999999999999987653

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.1e-64  Score=494.16  Aligned_cols=305  Identities=28%  Similarity=0.431  Sum_probs=257.9

Q ss_pred             CCccEEEEeCCCCCCchhhHHHHHhcCCCceeee---CCCCChhhhcCcceEEEEe-CCCCCHHHHhcCCCCeEEEEeCc
Q 017490           34 KNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV---VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGV  109 (370)
Q Consensus        34 ~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~  109 (370)
                      +.|+||+++.+..+    ...+.++.. ++++..   .+.+++.+.++++|+++++ ..++++++++++|+||||++.|+
T Consensus        24 ~~~~~vli~~~~~~----~~~~~l~~~-~~~v~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~   98 (335)
T 2g76_A           24 ANLRKVLISDSLDP----CCRKILQDG-GLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGT   98 (335)
T ss_dssp             --CCEEEECSCCCH----HHHHHHHHH-TCEEEECCSCCHHHHHHHGGGCSEEEECSSSCBCHHHHHHCSSCCEEEESSS
T ss_pred             ccceEEEEcCCCCH----HHHHHHHhC-CCEEEECCCCCHHHHHHHhcCceEEEEcCCCCCCHHHHhhCCCCcEEEECCC
Confidence            34568888765422    123344332 333332   2345667788899998875 45799999999999999999999


Q ss_pred             ccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCC--CcccccCceEEEEecCc
Q 017490          110 GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--TGETLLGKTVFILGFGN  187 (370)
Q Consensus       110 G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~--~~~~l~g~tvGIiGlG~  187 (370)
                      |+|+||+++|+++||.|+|+||+   |+.+||||++++||++.|++..+++.+++|.|...  .+.+++|++|||||+|.
T Consensus        99 G~d~id~~~~~~~gI~v~n~p~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~l~g~tvgIIGlG~  175 (335)
T 2g76_A           99 GVDNVDLEAATRKGILVMNTPNG---NSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGR  175 (335)
T ss_dssp             SCTTBCHHHHHHHTCEEECCSST---THHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCTGGGCBCCCTTCEEEEECCSH
T ss_pred             CcchhChHHHHhCCeEEEECCCc---cchHHHHHHHHHHHHHHhchHHHHHHHHcCCCCccCCCCcCCCcCEEEEEeECH
Confidence            99999999999999999999998   78999999999999999999999999999999642  46899999999999999


Q ss_pred             hhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEEEeccCChhhhcc
Q 017490          188 IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTAGI  266 (370)
Q Consensus       188 IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~lP~t~~t~~l  266 (370)
                      ||+.+|+++++|||+|++||++..+. .                  ....+ ...++++++++||+|++|+|++++|+++
T Consensus       176 IG~~vA~~l~~~G~~V~~~d~~~~~~-~------------------~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t~~l  236 (335)
T 2g76_A          176 IGREVATRMQSFGMKTIGYDPIISPE-V------------------SASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGL  236 (335)
T ss_dssp             HHHHHHHHHHTTTCEEEEECSSSCHH-H------------------HHHTTCEECCHHHHGGGCSEEEECCCCCTTTTTS
T ss_pred             HHHHHHHHHHHCCCEEEEECCCcchh-h------------------hhhcCceeCCHHHHHhcCCEEEEecCCCHHHHHh
Confidence            99999999999999999999875431 0                  01111 2358999999999999999999999999


Q ss_pred             cCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceEEccCCCCccHHHHHHH
Q 017490          267 VNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSM  346 (370)
Q Consensus       267 i~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~  346 (370)
                      ++++.|+.||+|++|||+|||+++|+++|+++|++|+++||+||||++|| ++++|||++|||++|||+||+|.++.+++
T Consensus       237 i~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~g~i~gA~lDV~~~EP-~~~~~L~~~~nvilTPH~~~~t~e~~~~~  315 (335)
T 2g76_A          237 LNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-PRDRALVDHENVISCPHLGASTKEAQSRC  315 (335)
T ss_dssp             BCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSS-CSCCHHHHSTTEEECSSCTTCBHHHHHHH
T ss_pred             hCHHHHhhCCCCcEEEECCCccccCHHHHHHHHHhCCccEEEEeecCCCC-CCCchHHhCCCEEECCcCCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999 67899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCCc
Q 017490          347 AKVVGDVALQLHAGTPLTGL  366 (370)
Q Consensus       347 ~~~~~~ni~~~~~g~~~~~~  366 (370)
                      .+.+++|+.+|++|+++.|+
T Consensus       316 ~~~~~~nl~~~~~g~~~~n~  335 (335)
T 2g76_A          316 GEEIAVQFVDMVKGKSLTGV  335 (335)
T ss_dssp             HHHHHHHHHHHC--------
T ss_pred             HHHHHHHHHHHHcCCCCCCC
Confidence            99999999999999998763

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=100.00  E-value=3e-64  Score=491.07  Aligned_cols=307  Identities=23%  Similarity=0.344  Sum_probs=264.0

Q ss_pred             cEEEEeCCCCCCchhhHHHHHhcCCCceeeeC----CCCChhhhcCcceEEEEe-CCCCCHHHHhcCCC--CeEEEEeCc
Q 017490           37 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVV----PISDVPDVIANYHLCVVK-TMRLDSNCISRANQ--MKLIMQFGV  109 (370)
Q Consensus        37 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~--Lk~I~~~~~  109 (370)
                      |||+++... +....+...+.+.+ ++++...    +.+++.+.++++|+++++ ..++++++++++|+  ||||++.|+
T Consensus         1 mki~~~~~~-~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~~   78 (331)
T 1xdw_A            1 MKVLCYGVR-DVELPIFEACNKEF-GYDIKCVPDYLNTKETAEMAAGFDAVILRGNCFANKQNLDIYKKLGVKYILTRTA   78 (331)
T ss_dssp             CEEEECSCC-TTTHHHHHHHGGGT-CCEEEECSCCSCSHHHHHTTTTCSEEEECTTCCBCHHHHHHHHHHTCCEEEESSS
T ss_pred             CEEEEEecC-ccCHHHHHHHHHhc-CeEEEECCCCCCHHHHHHHhcCCeEEEEeCCCCCCHHHHhhCcccCceEEEEccc
Confidence            588887543 22233334443333 4444332    224566778999998876 46899999999998  999999999


Q ss_pred             ccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC---CCcccccCceEEEEecC
Q 017490          110 GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV---PTGETLLGKTVFILGFG  186 (370)
Q Consensus       110 G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~---~~~~~l~g~tvGIiGlG  186 (370)
                      |+|+||+++++++||.|+|+||+   |+.+||||++++||++.|++..+++.+++|.|..   ..++++.|++|||||+|
T Consensus        79 G~d~id~~~~~~~gI~v~n~p~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIiG~G  155 (331)
T 1xdw_A           79 GTDHIDKEYAKELGFPMAFVPRY---SPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSKEVRNCTVGVVGLG  155 (331)
T ss_dssp             CCTTBCHHHHHHTTCCEECCCCC---CHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCSTTCCCCGGGSEEEEECCS
T ss_pred             cccccCHHHHHhCCcEEEeCCCC---CcHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCccccCcCccCCCCCEEEEECcC
Confidence            99999999999999999999998   7799999999999999999999999999999853   35789999999999999


Q ss_pred             chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhhcc
Q 017490          187 NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGI  266 (370)
Q Consensus       187 ~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~l  266 (370)
                      .||+.+|+++++|||+|++||++..+. .               .+.    ..+.++++++++||+|++|+|++++|+++
T Consensus       156 ~IG~~~A~~l~~~G~~V~~~d~~~~~~-~---------------~~~----~~~~~l~ell~~aDvV~~~~p~t~~t~~l  215 (331)
T 1xdw_A          156 RIGRVAAQIFHGMGATVIGEDVFEIKG-I---------------EDY----CTQVSLDEVLEKSDIITIHAPYIKENGAV  215 (331)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSCCCS-C---------------TTT----CEECCHHHHHHHCSEEEECCCCCTTTCCS
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCccHH-H---------------Hhc----cccCCHHHHHhhCCEEEEecCCchHHHHH
Confidence            999999999999999999999976541 0               011    12358999999999999999999999999


Q ss_pred             cCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCC--CCC-------C----cccCC-CceEEc
Q 017490          267 VNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPF--DPN-------D----PILKF-KNVLIT  332 (370)
Q Consensus       267 i~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl--~~~-------~----pL~~~-~nvilT  332 (370)
                      |+++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++||+  |++       +    |||++ |||++|
T Consensus       216 i~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~~nvilT  295 (331)
T 1xdw_A          216 VTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLIT  295 (331)
T ss_dssp             BCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTGGGTTTCCCTTSCCSSHHHHHHHHTTTTEEEC
T ss_pred             hCHHHHhhCCCCcEEEECCCcccccHHHHHHHHHhCCceEEEEecCCCCCCcccccccccccCccchHHHHhCCCCEEEc
Confidence            999999999999999999999999999999999999999999999999994  333       3    79999 999999


Q ss_pred             cCCCCccHHHHHHHHHHHHHHHHHHHcCCCCCCccccC
Q 017490          333 PHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGLEFVN  370 (370)
Q Consensus       333 PHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~~~~~  370 (370)
                      ||+||+|.++..++.+.+++|+.+|++|+++.|  .||
T Consensus       296 PHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~--~v~  331 (331)
T 1xdw_A          296 PHLGSYTDEAVKNMVEVSYQNLKDLAETGDCPN--KIK  331 (331)
T ss_dssp             CSCTTCSHHHHHHHHHHHHHHHHHHHHHSCCTT--BCC
T ss_pred             CccccChHHHHHHHHHHHHHHHHHHHcCCCCCC--CCC
Confidence            999999999999999999999999999998865  355

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=100.00  E-value=6.3e-64  Score=497.33  Aligned_cols=275  Identities=25%  Similarity=0.352  Sum_probs=251.8

Q ss_pred             CChhhhcCcceEEEEe---CCCCCHHHHhcCCCCeEEEEeCcccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHH
Q 017490           71 SDVPDVIANYHLCVVK---TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL  147 (370)
Q Consensus        71 ~~~~~~~~~~d~~i~~---~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~  147 (370)
                      +++.+.+.++|+++..   ..++++++|+++|+||||++.|+|+|+||+++|+++||.|+|+||+   |+.+||||++++
T Consensus        81 ~~l~~~l~~ad~li~~~~~~~~i~~~~l~~~p~Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~~g~---~~~~VAE~al~l  157 (393)
T 2nac_A           81 SVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYC---NSISVAEHVVMM  157 (393)
T ss_dssp             SHHHHHHTTCSEEEEBTTBCCCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHTTCEEEECTTT---THHHHHHHHHHH
T ss_pred             HHHHHhccCCCEEEEcCccCCCCCHHHHhhCCCCcEEEEcCccccccCHHHHhcCCEEEEeCCCc---ccHHHHHHHHHH
Confidence            3567788999998875   3479999999999999999999999999999999999999999998   789999999999


Q ss_pred             HHHHHHhHHHHHHHHHhcccCC----CCcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchh
Q 017490          148 MLGLLRKQNEMRMAIEQKKLGV----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSAL  223 (370)
Q Consensus       148 ~L~~~R~~~~~~~~~~~~~~~~----~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~  223 (370)
                      ||++.|++..+++.+++|.|..    ..+.+|+|+||||||+|.||+.+|+++++|||+|++||++..+..         
T Consensus       158 iL~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~---------  228 (393)
T 2nac_A          158 ILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPES---------  228 (393)
T ss_dssp             HHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHH---------
T ss_pred             HHHHHhccHHHHHHHHcCCCCccccccCCccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchh---------
Confidence            9999999999999999999963    246789999999999999999999999999999999998754311         


Q ss_pred             hhccccccccccccC--CCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 017490          224 AVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC  301 (370)
Q Consensus       224 ~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~  301 (370)
                               .....+  ...++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|+++|+++|++
T Consensus       229 ---------~~~~~G~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~  299 (393)
T 2nac_A          229 ---------VEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALES  299 (393)
T ss_dssp             ---------HHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHT
T ss_pred             ---------hHhhcCceecCCHHHHHhcCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHc
Confidence                     011111  125799999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceEEEEecCCCCCCCCCCcccCCCceEEccCCCCccHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 017490          302 GHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL  366 (370)
Q Consensus       302 g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~  366 (370)
                      |+|+||+||||++||+++++|||++|||++|||+||+|.+++.++.+.+++|+++|++|+++.|.
T Consensus       300 g~i~gA~lDV~~~EP~~~~~pL~~~~nvilTPHia~~T~e~~~~~~~~~~~nl~~~~~G~~~~~~  364 (393)
T 2nac_A          300 GRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAAGTREILECFFEGRPIRDE  364 (393)
T ss_dssp             TSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCTTCSHHHHHHHHHHHHHHHHHHHHTCCCCGG
T ss_pred             CCeeEEEEEecCCCCCCCCChhHcCCCEEECCCCCcCcHHHHHHHHHHHHHHHHHHHcCCCCcce
Confidence            99999999999999999999999999999999999999999999999999999999999998775

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=100.00  E-value=3.5e-64  Score=496.13  Aligned_cols=279  Identities=28%  Similarity=0.405  Sum_probs=251.4

Q ss_pred             CCChhhhcCcceEEEEeC---CCCCHHHHhcCCCCeEEEEeCcccCccchhhHhcC--CeEEeccCCCCCCCchhHHHHH
Q 017490           70 ISDVPDVIANYHLCVVKT---MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRC--GIKVARIPGDVTGNAASCAELT  144 (370)
Q Consensus        70 ~~~~~~~~~~~d~~i~~~---~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~--gI~V~n~pg~~~~na~~vAE~~  144 (370)
                      .+++.+.++++|+++...   .++++++|+++|+||||++.|+|+|+||+++|+++  ||.|+|+||+   |+.+||||+
T Consensus        51 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~~~gI~V~n~pg~---~~~~vAE~~  127 (364)
T 2j6i_A           51 NSVLDQHIPDADIIITTPFHPAYITKERIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGS---NVVSVAEHV  127 (364)
T ss_dssp             TSHHHHHGGGCSEEEECTTSCCCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHHTCCCEEEECTTS---SHHHHHHHH
T ss_pred             HHHHHHHhhCCeEEEecCcCCCCCCHHHHhhCCCCeEEEECCcccccccHHHHHhcCCCEEEEECCCc---CcHHHHHHH
Confidence            356778889999988743   35899999999999999999999999999999999  9999999998   889999999


Q ss_pred             HHHHHHHHHhHHHHHHHHHhcccCC----CCcccccCceEEEEecCchhHHHHHHhccCCCE-EEEEcCCCccccccccc
Q 017490          145 IYLMLGLLRKQNEMRMAIEQKKLGV----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWASHSQVSCQ  219 (370)
Q Consensus       145 l~~~L~~~R~~~~~~~~~~~~~~~~----~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~-V~~~dr~~~~~~~~~~~  219 (370)
                      +++||++.|++..+++.+++|.|..    ..+.+|+|+||||||+|.||+.+|+++++|||+ |++||++..+..     
T Consensus       128 ~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~-----  202 (364)
T 2j6i_A          128 VMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKD-----  202 (364)
T ss_dssp             HHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHH-----
T ss_pred             HHHHHHHHhChHHHHHHHHhCCCCcCcccCCcccCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchh-----
Confidence            9999999999999999999999963    246899999999999999999999999999997 999998764311     


Q ss_pred             cchhhhccccccccccccC--CCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 017490          220 SSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAH  297 (370)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~  297 (370)
                                   ...+.+  ...++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|+++|++
T Consensus       203 -------------~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~  269 (364)
T 2j6i_A          203 -------------AEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAA  269 (364)
T ss_dssp             -------------HHHHTTEEECSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHH
T ss_pred             -------------HHHhcCcEecCCHHHHHhcCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHH
Confidence                         011111  12479999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCceEEEEecCCCCCCCCCCcccCC--C---ceEEccCCCCccHHHHHHHHHHHHHHHHHHHcCC-CCCCcccc
Q 017490          298 YLECGHLGGLGIDVAWTEPFDPNDPILKF--K---NVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGT-PLTGLEFV  369 (370)
Q Consensus       298 aL~~g~i~ga~lDV~~~EPl~~~~pL~~~--~---nvilTPHia~~t~~~~~~~~~~~~~ni~~~~~g~-~~~~~~~~  369 (370)
                      +|++|+|+||+||||++||+|+++|||.+  |   ||++|||+||+|.++..++.+.+++|+.+|++|+ ++...|+|
T Consensus       270 aL~~g~i~gA~LDVf~~EP~~~~~pL~~~~~~~~~nvilTPHia~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~~n~v  347 (364)
T 2j6i_A          270 ALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTTLDAQTRYAQGTVNILESFFTGKFDYRPQDII  347 (364)
T ss_dssp             HHHHTSEEEEEESCCSSSSCCTTCHHHHCCCTTSCCEEECCSCGGGSHHHHHHHHHHHHHHHHHHHTTCCCCCGGGEE
T ss_pred             HHHcCCCcEEEEecCCCCCCCCCChHHhccCCccCcEEECCccCcCCHHHHHHHHHHHHHHHHHHHcCCCCCCCCcee
Confidence            99999999999999999999999999999  9   9999999999999999999999999999999998 33334444

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=100.00  E-value=2.2e-63  Score=480.19  Aligned_cols=298  Identities=28%  Similarity=0.434  Sum_probs=261.0

Q ss_pred             ccEEEEeCCCCCCchhhHHHHHhcCCCceeee---CCCCChhhhcCcceEEEEeCC-CCCHHHHhcCCCCeEEEEeCccc
Q 017490           36 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV---VPISDVPDVIANYHLCVVKTM-RLDSNCISRANQMKLIMQFGVGL  111 (370)
Q Consensus        36 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~d~~i~~~~-~~~~~~l~~~~~Lk~I~~~~~G~  111 (370)
                      +|||+++.+. +  ... .+.++.. ++++..   .+.+++.+.++++|+++++.. ++++++++++|+||||++.|+|+
T Consensus         3 ~~~il~~~~~-~--~~~-~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~   77 (307)
T 1wwk_A            3 RMKVLVAAPL-H--EKA-IQVLKDA-GLEVIYEEYPDEDRLVELVKDVEAIIVRSKPKVTRRVIESAPKLKVIARAGVGL   77 (307)
T ss_dssp             -CEEEECSCC-C--HHH-HHHHHHT-TCEEEECSSCCHHHHHHHSTTCSEEEESSCSCBCHHHHTTCTTCCEEEESSSCC
T ss_pred             ceEEEEeCCC-C--HHH-HHHHHhC-CeEEEeCCCCCHHHHHHHhcCCEEEEEcCCCCCCHHHHhhCCCCeEEEECCccc
Confidence            3689987753 2  222 2334332 444432   233456777899999887644 69999999999999999999999


Q ss_pred             CccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC--CCcccccCceEEEEecCchh
Q 017490          112 EGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PTGETLLGKTVFILGFGNIG  189 (370)
Q Consensus       112 d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~--~~~~~l~g~tvGIiGlG~IG  189 (370)
                      |+||+++++++||.|+|+||+   |+.+||||++++||++.|++..+++.+++|.|..  ..+.++.|++|||||+|.||
T Consensus        78 d~id~~~~~~~gi~v~n~~g~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~l~g~~vgIiG~G~IG  154 (307)
T 1wwk_A           78 DNIDVEAAKEKGIEVVNAPAA---SSRSVAELAVGLMFSVARKIAFADRKMREGVWAKKEAMGIELEGKTIGIIGFGRIG  154 (307)
T ss_dssp             TTBCHHHHHHHTCEEECCGGG---GHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCTTTCCBCCCTTCEEEEECCSHHH
T ss_pred             cccCHHHHHhCCcEEEECCCC---ChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccCcCCcccCCceEEEEccCHHH
Confidence            999999999999999999998   8899999999999999999999999999999974  45789999999999999999


Q ss_pred             HHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEEEeccCChhhhcccC
Q 017490          190 VELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTAGIVN  268 (370)
Q Consensus       190 ~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~lP~t~~t~~li~  268 (370)
                      +++|++++++||+|++||++..+. .                  ..+.+ ...++++++++||+|++|+|++++|+++++
T Consensus       155 ~~~A~~l~~~G~~V~~~d~~~~~~-~------------------~~~~g~~~~~l~ell~~aDvV~l~~p~~~~t~~li~  215 (307)
T 1wwk_A          155 YQVAKIANALGMNILLYDPYPNEE-R------------------AKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLIN  215 (307)
T ss_dssp             HHHHHHHHHTTCEEEEECSSCCHH-H------------------HHHTTCEECCHHHHHHHCSEEEECCCCSTTTTTCBC
T ss_pred             HHHHHHHHHCCCEEEEECCCCChh-h------------------HhhcCccccCHHHHHhhCCEEEEecCCChHHhhhcC
Confidence            999999999999999999976431 0                  01111 234799999999999999999999999999


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceEEccCCCCccHHHHHHHHH
Q 017490          269 KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAK  348 (370)
Q Consensus       269 ~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~  348 (370)
                      ++.|+.||+|++|||+|||+++|+++|.++|++|+++||+||||++||+++++|||++|||++|||++++|.++..++.+
T Consensus       216 ~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~~~~  295 (307)
T 1wwk_A          216 EERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAGV  295 (307)
T ss_dssp             HHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECSSCTTCBHHHHHHHHH
T ss_pred             HHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEecCCCCCCCCCChHHhCCCEEECCccccCcHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcC
Q 017490          349 VVGDVALQLHAG  360 (370)
Q Consensus       349 ~~~~ni~~~~~g  360 (370)
                      .+++|+.+|++|
T Consensus       296 ~~~~nl~~~~~g  307 (307)
T 1wwk_A          296 EVAEKVVKILKG  307 (307)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHcC
Confidence            999999999976

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=100.00  E-value=1.2e-62  Score=475.90  Aligned_cols=269  Identities=30%  Similarity=0.453  Sum_probs=250.8

Q ss_pred             CChhhhcCcceEEEEeC-CCCCHHHHhcCCCCeEEEEeCcccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHH
Q 017490           71 SDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML  149 (370)
Q Consensus        71 ~~~~~~~~~~d~~i~~~-~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L  149 (370)
                      +++.+.++++|+++++. .++++++++++|+||||++.|+|+|+||+++|+++||.|+|+||+   |+.+||||++++||
T Consensus        35 ~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~~~---~~~~vAE~~~~~~L  111 (311)
T 2cuk_A           35 AELLKRVEGAVGLIPTVEDRIDAEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGV---LTEATADLTLALLL  111 (311)
T ss_dssp             HHHHHHHTTCSEEECCTTSCBCHHHHHHSTTCCEEECSSSCCTTBCHHHHHTTTCEEECCCST---THHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCeEEEEcCCCCCCHHHHhhCCCCeEEEECCcCccccCHHHHHhCCcEEEECCCC---ChHHHHHHHHHHHH
Confidence            45667788999988754 589999999999999999999999999999999999999999998   78999999999999


Q ss_pred             HHHHhHHHHHHHHHhcccCC-----CCcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhh
Q 017490          150 GLLRKQNEMRMAIEQKKLGV-----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALA  224 (370)
Q Consensus       150 ~~~R~~~~~~~~~~~~~~~~-----~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~  224 (370)
                      ++.|++..+++.+++|.|..     ..+.++.|++|||||+|.||+.+|++++++||+|++|||+..+.           
T Consensus       112 ~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-----------  180 (311)
T 2cuk_A          112 AVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPL-----------  180 (311)
T ss_dssp             HHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS-----------
T ss_pred             HHHcChHHHHHHHHcCCCCccccccccCcCCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCccc-----------
Confidence            99999999999999999952     23679999999999999999999999999999999999976541           


Q ss_pred             hccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 017490          225 VKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHL  304 (370)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i  304 (370)
                             .     ....++++++++||+|++|+|++++|+++++++.|+.||+|+++||+|||+++|+++|.++|+ |++
T Consensus       181 -------~-----~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~-g~i  247 (311)
T 2cuk_A          181 -------P-----YPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEALR-GHL  247 (311)
T ss_dssp             -------S-----SCBCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHT-TTS
T ss_pred             -------c-----cccCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHh-CcC
Confidence                   1     124689999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             eEEEEecCCCCCCCCCCcccCCCceEEccCCCCccHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 017490          305 GGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL  366 (370)
Q Consensus       305 ~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~  366 (370)
                      +||++|||++||++.++|||++|||++|||++++|.++..++.+.+++|+.+|++|+++.|.
T Consensus       248 ~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~  309 (311)
T 2cuk_A          248 FGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAVENLLAVLEGREPPNP  309 (311)
T ss_dssp             SEEEESSCSSSSCCTTSGGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHTTCCCSSB
T ss_pred             CEEEEeeCCCCCCCCCChhhhCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999988765

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=3.6e-62  Score=474.31  Aligned_cols=305  Identities=24%  Similarity=0.348  Sum_probs=263.0

Q ss_pred             cEEEEeCCCCCCchhhHHHHHhcCCCceeeeC----CCCChhhhcCcceEEEEeC-CCCCHHHHhcCCC-CeEEEEeCcc
Q 017490           37 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVV----PISDVPDVIANYHLCVVKT-MRLDSNCISRANQ-MKLIMQFGVG  110 (370)
Q Consensus        37 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~d~~i~~~-~~~~~~~l~~~~~-Lk~I~~~~~G  110 (370)
                      +||+++.+. +  ... .+.++...++++...    +.+++.+.++++|+++++. .++++++++++|+ ||||++.|+|
T Consensus         2 ~~vl~~~~~-~--~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~Lk~I~~~~~G   77 (320)
T 1gdh_A            2 KKILITWPL-P--EAA-MARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIG   77 (320)
T ss_dssp             CEEEESSCC-C--HHH-HHHHHTTSEEEECCSTTCCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHSCTTCCEEEEESSC
T ss_pred             cEEEEcCCC-C--HHH-HHHHHhcCCEEEecCCCCCCHHHHHHHhcCCEEEEECCCCCCCHHHHHhCCccceEEEECCcc
Confidence            578887643 2  222 334444323433222    2345677789999988765 5899999999999 9999999999


Q ss_pred             cCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC-----CCcccccCceEEEEec
Q 017490          111 LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV-----PTGETLLGKTVFILGF  185 (370)
Q Consensus       111 ~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~-----~~~~~l~g~tvGIiGl  185 (370)
                      +|+||+++|+++||.|+|+||+   |+.+||||++++||++.|++..+++.+++|.|..     ..+.++.|++|||||+
T Consensus        78 ~d~id~~~~~~~gi~v~n~p~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~  154 (320)
T 1gdh_A           78 FDHIDLDACKARGIKVGNAPHG---VTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGF  154 (320)
T ss_dssp             CTTBCHHHHHHTTCEEECCCCS---CHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECC
T ss_pred             cccccHHHHHhCCcEEEEcCCC---CHHHHHHHHHHHHHHHHccHHHHHHHHHcCCCCccccccccCcCCCCCEEEEECc
Confidence            9999999999999999999998   7899999999999999999999999999999962     2467999999999999


Q ss_pred             CchhHHHHHHhccCCCEEEEEcC-CCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhh
Q 017490          186 GNIGVELAKRLRPFGVKIIATKR-SWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTA  264 (370)
Q Consensus       186 G~IG~~vA~~l~~~G~~V~~~dr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~  264 (370)
                      |.||+++|++++++||+|++||+ +..+. ...             .... .  ...++++++++||+|++|+|++++|+
T Consensus       155 G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~-------------~~g~-~--~~~~l~ell~~aDvVil~~p~~~~t~  217 (320)
T 1gdh_A          155 GSIGQALAKRAQGFDMDIDYFDTHRASSS-DEA-------------SYQA-T--FHDSLDSLLSVSQFFSLNAPSTPETR  217 (320)
T ss_dssp             SHHHHHHHHHHHTTTCEEEEECSSCCCHH-HHH-------------HHTC-E--ECSSHHHHHHHCSEEEECCCCCTTTT
T ss_pred             CHHHHHHHHHHHHCCCEEEEECCCCcChh-hhh-------------hcCc-E--EcCCHHHHHhhCCEEEEeccCchHHH
Confidence            99999999999999999999999 75431 000             0001 0  12379999999999999999999999


Q ss_pred             cccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceEEccCCCCccHHHHH
Q 017490          265 GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYR  344 (370)
Q Consensus       265 ~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~  344 (370)
                      ++++++.|+.||+|++|||+|||+++|+++|.++|++|+++||++|||++|| ++++|||++|||++|||++++|.++..
T Consensus       218 ~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~i~gA~lDv~~~eP-~~~~~L~~~~nviltPH~~~~t~~~~~  296 (320)
T 1gdh_A          218 YFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEP-NINEGYYDLPNTFLFPHIGSAATQARE  296 (320)
T ss_dssp             TCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTT-SCCTTGGGCTTEEECSSCTTCBHHHHH
T ss_pred             hhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCC-CCCChhhhCCCEEECCcCCcCcHHHHH
Confidence            9999999999999999999999999999999999999999999999999999 889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcc
Q 017490          345 SMAKVVGDVALQLHAGTPLTGLE  367 (370)
Q Consensus       345 ~~~~~~~~ni~~~~~g~~~~~~~  367 (370)
                      ++.+.+ +|+.+|++|+++..+.
T Consensus       297 ~~~~~~-~nl~~~~~g~~~~~~~  318 (320)
T 1gdh_A          297 DMAHQA-NDLIDALFGGADMSYA  318 (320)
T ss_dssp             HHHHHH-HHHHHHHHTTSCCTTB
T ss_pred             HHHHHH-HHHHHHHcCCCCcccc
Confidence            999999 9999999999987664

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=100.00  E-value=1.6e-62  Score=475.39  Aligned_cols=299  Identities=25%  Similarity=0.414  Sum_probs=262.5

Q ss_pred             cEEEEeCCCCCCchhhHHHHHhcCCCceeee---CCCCChhhhcCcceEEEEe-CCCCCHHHHhcCCCCeEEEEeCcccC
Q 017490           37 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDV---VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLE  112 (370)
Q Consensus        37 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d  112 (370)
                      |||+++.+. +  ... .+.++.. ++++..   .+.+++.+.++++|+++++ ..++++++++++|+||||++.|+|+|
T Consensus         6 mkil~~~~~-~--~~~-~~~l~~~-~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d   80 (313)
T 2ekl_A            6 VKALITDPI-D--EIL-IKTLREK-GIQVDYMPEISKEELLNIIGNYDIIVVRSRTKVTKDVIEKGKKLKIIARAGIGLD   80 (313)
T ss_dssp             CEEEECSCC-C--HHH-HHHHHHT-TCEEEECTTCCHHHHHHHGGGCSEEEECSSSCBCHHHHHHCTTCCEEEECSSCCT
T ss_pred             eEEEEECCC-C--HHH-HHHHHhC-CcEEEeCCCCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhCCCCeEEEEcCCCCC
Confidence            588987753 2  222 2334332 344422   2335566778899998875 46899999999999999999999999


Q ss_pred             ccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEecCchhHHH
Q 017490          113 GVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVEL  192 (370)
Q Consensus       113 ~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~v  192 (370)
                      +||+++++++||.|+|+||+   |+.+||||++++||++.|++..+++.+++|.|....+.++.|++|||||+|.||+++
T Consensus        81 ~id~~~~~~~gi~v~n~~g~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~l~g~~vgIIG~G~IG~~~  157 (313)
T 2ekl_A           81 NIDTEEAEKRNIKVVYAPGA---STDSAVELTIGLMIAAARKMYTSMALAKSGIFKKIEGLELAGKTIGIVGFGRIGTKV  157 (313)
T ss_dssp             TBCHHHHHHTTCEEECCTTT---THHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCCCTTCEEEEESCSHHHHHH
T ss_pred             ccCHHHHHhCCeEEEeCCCC---CchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCCCCCCCCEEEEEeeCHHHHHH
Confidence            99999999999999999998   789999999999999999999999999999997556789999999999999999999


Q ss_pred             HHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEEEeccCChhhhcccCHHH
Q 017490          193 AKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTAGIVNKSF  271 (370)
Q Consensus       193 A~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~  271 (370)
                      |++++++||+|++||++..+..                   ....+ ...++++++++||+|++|+|++++|+++++++.
T Consensus       158 A~~l~~~G~~V~~~d~~~~~~~-------------------~~~~g~~~~~l~ell~~aDvVvl~~P~~~~t~~li~~~~  218 (313)
T 2ekl_A          158 GIIANAMGMKVLAYDILDIREK-------------------AEKINAKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQ  218 (313)
T ss_dssp             HHHHHHTTCEEEEECSSCCHHH-------------------HHHTTCEECCHHHHHHHCSEEEECCCCCTTSCCSBCHHH
T ss_pred             HHHHHHCCCEEEEECCCcchhH-------------------HHhcCceecCHHHHHhhCCEEEEeccCChHHHHhhCHHH
Confidence            9999999999999999765310                   01111 124899999999999999999999999999999


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCC---cccCCCceEEccCCCCccHHHHHHHHH
Q 017490          272 LSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPND---PILKFKNVLITPHVGGVTEHSYRSMAK  348 (370)
Q Consensus       272 l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~---pL~~~~nvilTPHia~~t~~~~~~~~~  348 (370)
                      |+.||+|++|||+|||+++|+++|.++|++|+++||+||||++||++ ++   |||++|||++|||++++|.++.+++.+
T Consensus       219 l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~-~~~~~~L~~~~nviltPH~~~~t~~~~~~~~~  297 (313)
T 2ekl_A          219 FELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPK-EEWELELLKHERVIVTTHIGAQTKEAQKRVAE  297 (313)
T ss_dssp             HHHSCTTEEEEESSCGGGBCHHHHHHHHHTTCEEEEEESCCSSSSCC-SHHHHHHHHSTTEEECCSCTTCSHHHHHHHHH
T ss_pred             HhcCCCCCEEEECCCCcccCHHHHHHHHHcCCCcEEEEecCCCCCCC-CcccchHhhCCCEEECCccCcCcHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999987 66   999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCC
Q 017490          349 VVGDVALQLHAGTPL  363 (370)
Q Consensus       349 ~~~~ni~~~~~g~~~  363 (370)
                      .+++|+.+|++|+++
T Consensus       298 ~~~~n~~~~~~g~~l  312 (313)
T 2ekl_A          298 MTTQNLLNAMKELGM  312 (313)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHcCCCC
Confidence            999999999999986

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=100.00  E-value=5.1e-61  Score=470.44  Aligned_cols=310  Identities=22%  Similarity=0.352  Sum_probs=261.8

Q ss_pred             ccEEEEeCCCCCCchhhHHHHHhcCCCceee-eCCCCChhhhc-CcceEEEEe-CCCCCHHHHhcCCCCeEEEEeCcccC
Q 017490           36 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVD-VVPISDVPDVI-ANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLE  112 (370)
Q Consensus        36 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d  112 (370)
                      +++|++.+..... .  ..+.++....+... ..+.+++.+.+ .++|+++++ ..++++++++++|+||||++.|+|+|
T Consensus        21 kp~i~~l~~~~~~-~--~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d   97 (347)
T 1mx3_A           21 MPLVALLDGRDCT-V--EMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFD   97 (347)
T ss_dssp             CCEEEESSCSCCT-T--THHHHTTTCEEEECCCSSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTCSSCCEEEESSSCCT
T ss_pred             CCEEEEEcCCcch-h--hHHHhhccceEEecCCCCHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhCCCCCEEEEcccccC
Confidence            4788888753211 1  23444432222221 22344555553 677776654 56899999999999999999999999


Q ss_pred             ccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCC---------CcccccCceEEEE
Q 017490          113 GVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP---------TGETLLGKTVFIL  183 (370)
Q Consensus       113 ~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~---------~~~~l~g~tvGIi  183 (370)
                      +||+++|+++||.|+|+||+   |+.+||||++++||++.|++..+++.+++|.|...         .+.+++|+|||||
T Consensus        98 ~id~~~~~~~gI~V~n~~~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~l~g~tvGII  174 (347)
T 1mx3_A           98 NIDIKSAGDLGIAVCNVPAA---SVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGII  174 (347)
T ss_dssp             TBCHHHHHHTTCEEECCCST---THHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEE
T ss_pred             cccHHHHHhCCceEEECCCC---CHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccccccccccCccCCCCCEEEEE
Confidence            99999999999999999998   78999999999999999999999999999999532         1268999999999


Q ss_pred             ecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCCEEEEeccCCh
Q 017490          184 GFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCCLSLNK  261 (370)
Q Consensus       184 GlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~l~lP~t~  261 (370)
                      |+|.||+.+|+++++|||+|++||++..+..                   ....+  ...++++++++||+|++|+|+++
T Consensus       175 G~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-------------------~~~~g~~~~~~l~ell~~aDvV~l~~P~t~  235 (347)
T 1mx3_A          175 GLGRVGQAVALRAKAFGFNVLFYDPYLSDGV-------------------ERALGLQRVSTLQDLLFHSDCVTLHCGLNE  235 (347)
T ss_dssp             CCSHHHHHHHHHHHTTTCEEEEECTTSCTTH-------------------HHHHTCEECSSHHHHHHHCSEEEECCCCCT
T ss_pred             eECHHHHHHHHHHHHCCCEEEEECCCcchhh-------------------HhhcCCeecCCHHHHHhcCCEEEEcCCCCH
Confidence            9999999999999999999999998754310                   01111  12479999999999999999999


Q ss_pred             hhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCC-CCCcccCCCceEEccCCCCccH
Q 017490          262 QTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFD-PNDPILKFKNVLITPHVGGVTE  340 (370)
Q Consensus       262 ~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~-~~~pL~~~~nvilTPHia~~t~  340 (370)
                      +|+++|+++.|+.||+|++|||+|||+++|+++|+++|++|+|+||++|||+.||++ .++|||.+|||++|||+|++|.
T Consensus       236 ~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~~L~~~~nvi~tPHia~~t~  315 (347)
T 1mx3_A          236 HNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSE  315 (347)
T ss_dssp             TCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTSSTTTTCSSEEECSSCTTCCH
T ss_pred             HHHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHHHhCCCcEEEEeecccCCCCCCCchHHhCCCEEEEchHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999987 4789999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCC-ccccC
Q 017490          341 HSYRSMAKVVGDVALQLHAGTPLTG-LEFVN  370 (370)
Q Consensus       341 ~~~~~~~~~~~~ni~~~~~g~~~~~-~~~~~  370 (370)
                      ++..++.+.+++|+.+|++|+++.+ .+.||
T Consensus       316 ~~~~~~~~~~~~ni~~~~~g~~~~~l~~~v~  346 (347)
T 1mx3_A          316 QASIEMREEAAREIRRAITGRIPDSLKNCVN  346 (347)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCTTTTCSSBCC
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCcccCCCCC
Confidence            9999999999999999999987753 45565

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=100.00  E-value=1e-60  Score=466.08  Aligned_cols=271  Identities=27%  Similarity=0.403  Sum_probs=248.6

Q ss_pred             hhhhcCcceEEEEe-CCCCCHHHHhcCCCCeEEEEeCcccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHH
Q 017490           73 VPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGL  151 (370)
Q Consensus        73 ~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~  151 (370)
                      +.+.++++|+++++ ..++++++++++|+||||++.|+|+|+||+++|+++||.|+|+||+   |+.+||||++++||++
T Consensus        59 ~~~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~pg~---~~~~vAE~~~~l~L~~  135 (333)
T 3ba1_A           59 LALQAESIRAVVGNSNAGADAELIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDV---LTDDVADLAIGLILAV  135 (333)
T ss_dssp             HHHHTTTEEEEEECSSSCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHHTCEEECCCST---THHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCEEEEEcCCCCCCHHHHhhCCCCcEEEEcCccccccCHHHHHhCCcEEEECCCc---chHHHHHHHHHHHHHH
Confidence            44557899988875 4689999999999999999999999999999999999999999998   7899999999999999


Q ss_pred             HHhHHHHHHHHHhcccCC---CCcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccc
Q 017490          152 LRKQNEMRMAIEQKKLGV---PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNG  228 (370)
Q Consensus       152 ~R~~~~~~~~~~~~~~~~---~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~  228 (370)
                      +|++..+++.+++|.|..   ..+.+++|++|||||+|.||+.+|++++++||+|++||++....               
T Consensus       136 ~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~---------------  200 (333)
T 3ba1_A          136 LRRICECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPN---------------  200 (333)
T ss_dssp             HTTHHHHHHHHHTTGGGGCCCCCCCCCTTCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTT---------------
T ss_pred             HhCHHHHHHHHHcCCCCccccccccccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhc---------------
Confidence            999999999999999953   34689999999999999999999999999999999999876431               


Q ss_pred             cccccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEE
Q 017490          229 IIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLG  308 (370)
Q Consensus       229 ~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~  308 (370)
                         ....   ...++++++++||+|++|+|++++|+++++++.++.||+|++|||+|||.++|+++|.++|++|+++||+
T Consensus       201 ---~g~~---~~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~ga~  274 (333)
T 3ba1_A          201 ---TNYT---YYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAG  274 (333)
T ss_dssp             ---CCSE---EESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSCEEE
T ss_pred             ---cCce---ecCCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCeEEE
Confidence               1010   1357999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCCCCCCcccCCCceEEccCCCCccHHHHHHHHHHHHHHHHHHHcCCCCCCccccC
Q 017490          309 IDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGLEFVN  370 (370)
Q Consensus       309 lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~~~~~  370 (370)
                      +|||++||++. +|||++|||++|||+|++|.++..++.+.+++|+.+|++|+++.|.  ||
T Consensus       275 lDv~~~EP~~~-~~L~~~~nviltPH~~~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~--Vn  333 (333)
T 3ba1_A          275 LDVFEREPEVP-EKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLEAHFSGKPLLTP--VV  333 (333)
T ss_dssp             ESCCTTTTCCC-GGGGGCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHHHHTCCCSSB--CC
T ss_pred             EecCCCCCCCc-chhhcCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCC--CC
Confidence            99999999765 9999999999999999999999999999999999999999988653  65

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=1.2e-60  Score=460.08  Aligned_cols=264  Identities=23%  Similarity=0.334  Sum_probs=241.6

Q ss_pred             hhcCcceEEEEeCCCCCHHHHhcCCCCeEEEEeCcccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHh
Q 017490           75 DVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK  154 (370)
Q Consensus        75 ~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~  154 (370)
                      +.+.++|+++++  ..+.++++++|+||||++.|+|+|+||++++ ++||.|+|+||+   |+.+||||++++||++.|+
T Consensus        27 ~~~~~~d~~i~~--~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~-~~gi~v~~~~~~---~~~~vAE~~~~~~L~~~R~  100 (303)
T 1qp8_A           27 GDLGNVEAALVS--RITAEELAKMPRLKFIQVVTAGLDHLPWESI-PPHVTVAGNAGS---NADAVAEFALALLLAPYKR  100 (303)
T ss_dssp             SCCTTBCCCCBS--CCCHHHHHHCTTCCCEEBSSSCCTTSCCTTS-CTTSCEECCCSS---SHHHHHHHHHHHHHHHHTT
T ss_pred             hhhCCCEEEEEC--CCCHHHHhhCCCCcEEEECCcCcccccHHHH-hcCCEEEECCCC---CchHHHHHHHHHHHHHHhC
Confidence            456788987754  3567999999999999999999999999885 799999999997   7899999999999999999


Q ss_pred             HHHHHHHHHhcccCCC-CcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccc
Q 017490          155 QNEMRMAIEQKKLGVP-TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDL  233 (370)
Q Consensus       155 ~~~~~~~~~~~~~~~~-~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~  233 (370)
                      +..+++.+++|.|... ...++.|+||||||+|.||+++|+++++|||+|++|||+...                  .  
T Consensus       101 ~~~~~~~~~~g~w~~~~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~~------------------~--  160 (303)
T 1qp8_A          101 IIQYGEKMKRGDYGRDVEIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKE------------------G--  160 (303)
T ss_dssp             HHHHHHHHHTTCCCCCSCCCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCC------------------S--
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCccc------------------c--
Confidence            9999999999999644 456899999999999999999999999999999999987541                  0  


Q ss_pred             ccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecC-
Q 017490          234 VDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVA-  312 (370)
Q Consensus       234 ~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~-  312 (370)
                        ......++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|.++|++|+++||++||| 
T Consensus       161 --~~~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~gA~lDv~~  238 (303)
T 1qp8_A          161 --PWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWW  238 (303)
T ss_dssp             --SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCT
T ss_pred             --CcccCCCHHHHHhhCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCceEEEeccCC
Confidence              00123578999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             CCCCCCCCCcccCCCceEEccCCCCc--cHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 017490          313 WTEPFDPNDPILKFKNVLITPHVGGV--TEHSYRSMAKVVGDVALQLHAGTPLTGL  366 (370)
Q Consensus       313 ~~EPl~~~~pL~~~~nvilTPHia~~--t~~~~~~~~~~~~~ni~~~~~g~~~~~~  366 (370)
                      ++||+++++|||++|||++|||++|+  |.++++++.+.+++|+.+|++|+++.|.
T Consensus       239 ~~ep~~~~~~L~~~~nviltPH~~~~~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~  294 (303)
T 1qp8_A          239 GRNDFAKDAEFFSLPNVVATPWVAGGYGNERVWRQMVMEAVRNLITYATGGRPRNI  294 (303)
T ss_dssp             TTTCCGGGHHHHTSTTEEECCSCSSSSSCHHHHHHHHHHHHHHHHHHHTTSCCSCB
T ss_pred             CCCCCCCCChhhcCCCEEECCCcCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCce
Confidence            88999889999999999999999998  9999999999999999999999987653

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=100.00  E-value=3e-60  Score=465.79  Aligned_cols=307  Identities=21%  Similarity=0.325  Sum_probs=259.4

Q ss_pred             ccEEEEeCCCCCCchhhHHHHHhcCCCceee-eCCCCChhhhcC-----cceEEEEe-------CCCCCHHHHhcCC-CC
Q 017490           36 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVD-VVPISDVPDVIA-----NYHLCVVK-------TMRLDSNCISRAN-QM  101 (370)
Q Consensus        36 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~d~~i~~-------~~~~~~~~l~~~~-~L  101 (370)
                      ++||+++.+........ .+.++...++... ..+++++.+.++     ++|+++..       ..++++++|+++| +|
T Consensus         3 ~~~vl~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~L   81 (348)
T 2w2k_A            3 RPRVLLLGDPARHLDDL-WSDFQQKFEVIPANLTTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISHLPSSL   81 (348)
T ss_dssp             CCEEEECSSCCSSCHHH-HHHHHHHSEEEECCCCCHHHHHHHHHTTTTCCCSEEEECSTTTTGGGCCBCHHHHTTSCTTC
T ss_pred             CcEEEEECCccccChHH-HHHHHhcceEEecCCCCHHHHHHHhhhcccCCeEEEEEcccccccccCCCCHHHHHhcccCc
Confidence            46899988633221222 2233321122221 223456666665     78887763       3589999999998 69


Q ss_pred             eEEEEeCcccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcc---cCC------CCc
Q 017490          102 KLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKK---LGV------PTG  172 (370)
Q Consensus       102 k~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~---~~~------~~~  172 (370)
                      |||++.|+|+|+||+++|+++||.|+|+||+   |+.+||||++++||+++|++..+++.+++|.   |..      ..+
T Consensus        82 k~I~~~~~G~d~id~~~~~~~gI~v~n~p~~---~~~~vAe~~~~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~~~~~~  158 (348)
T 2w2k_A           82 KVFAAAGAGFDWLDLDALNERGVAFANSRGA---GDTATSDLALYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSA  158 (348)
T ss_dssp             CEEEESSSCCTTBCHHHHHHTTCEEECCTTT---THHHHHHHHHHHHHHHHHTHHHHHHHHTTCCHHHHHHHHHHHHTTC
T ss_pred             eEEEECCccccccCHHHHHhCCcEEEECCCC---CcHHHHHHHHHHHHHHHhChHHHHHHHHcCCCcccccccccccccC
Confidence            9999999999999999999999999999998   7899999999999999999999999999999   931      357


Q ss_pred             ccccCceEEEEecCchhHHHHHHhc-cCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhc
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLR-PFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASK  249 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~-~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~  249 (370)
                      .+++|++|||||+|.||+.+|++++ ++||+|++||++..+...                  ..+.+  ...++++++++
T Consensus       159 ~~l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~------------------~~~~g~~~~~~l~ell~~  220 (348)
T 2w2k_A          159 HNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAET------------------EKALGAERVDSLEELARR  220 (348)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHH------------------HHHHTCEECSSHHHHHHH
T ss_pred             cCCCCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhh------------------HhhcCcEEeCCHHHHhcc
Confidence            8999999999999999999999999 999999999997643110                  00111  12479999999


Q ss_pred             CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCce
Q 017490          250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNV  329 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nv  329 (370)
                      ||+|++|+|++++|+++++++.++.||+|++|||+|||+++|+++|.++|++|++.||++|||++|| ++++|||++|||
T Consensus       221 aDvVil~vp~~~~t~~li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP-~~~~~L~~~~nv  299 (348)
T 2w2k_A          221 SDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEP-QVSKELIEMKHV  299 (348)
T ss_dssp             CSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTTTT-SCCHHHHTSSSE
T ss_pred             CCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCCCC-CCCchhhcCCCE
Confidence            9999999999999999999999999999999999999999999999999999999999999999999 678899999999


Q ss_pred             EEccCCCCccHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 017490          330 LITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTG  365 (370)
Q Consensus       330 ilTPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~  365 (370)
                      ++|||+|++|.++..++.+.+++|+.+|++|+++.+
T Consensus       300 iltPH~~~~t~e~~~~~~~~~~~ni~~~~~g~~~~~  335 (348)
T 2w2k_A          300 TLTTHIGGVAIETFHEFERLTMTNIDRFLLQGKPLL  335 (348)
T ss_dssp             EECCSCTTCSHHHHHHHHHHHHHHHHHHHHTCCCCS
T ss_pred             EEcCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence            999999999999999999999999999999987654

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=100.00  E-value=1.8e-59  Score=457.17  Aligned_cols=306  Identities=25%  Similarity=0.408  Sum_probs=263.9

Q ss_pred             ccEEEEeCCCCCCchhhHHHHHhcCCCceeeeCC------CCChhhhcCcceEEEEe-CCCCCHHHHhcC-CCCeEEEEe
Q 017490           36 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVP------ISDVPDVIANYHLCVVK-TMRLDSNCISRA-NQMKLIMQF  107 (370)
Q Consensus        36 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~-~~Lk~I~~~  107 (370)
                      +|||+++.+. +  ... .+.++...++++..++      .+++.+.++++|+++++ ..++++++++++ |+||||++.
T Consensus         8 ~~~il~~~~~-~--~~~-~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~Lk~I~~~   83 (330)
T 2gcg_A            8 LMKVFVTRRI-P--AEG-RVALARAADCEVEQWDSDEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVISTM   83 (330)
T ss_dssp             CEEEEESSCC-C--HHH-HHHHHHCTTEEEEECCSSSCCCHHHHHHHHTTCSEEEECTTSCBCHHHHHHHCTTCCEEEES
T ss_pred             CCEEEEECCC-C--HHH-HHHHHhcCCceEEEecCCCCCCHHHHHHHhcCCeEEEECCCCCCCHHHHHhcCCCceEEEEC
Confidence            4688887643 2  222 2334332234443222      24566778899988874 468999999998 999999999


Q ss_pred             CcccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC-----CCcccccCceEEE
Q 017490          108 GVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV-----PTGETLLGKTVFI  182 (370)
Q Consensus       108 ~~G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~-----~~~~~l~g~tvGI  182 (370)
                      |+|+|+||+++++++||.|+|+||+   |+.+||||++++||++.|++..+++.++++.|..     ..+.++.|++|||
T Consensus        84 ~~G~d~id~~~~~~~gi~v~n~~~~---~~~~vAe~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~~vgI  160 (330)
T 2gcg_A           84 SVGIDHLALDEIKKRGIRVGYTPDV---LTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGI  160 (330)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCCST---THHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCTTSSCBCCCTTCEEEE
T ss_pred             CcccccccHHHHHhCCceEEeCCCC---ChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccCcCCCCCEEEE
Confidence            9999999999999999999999998   7899999999999999999999999999999963     2368999999999


Q ss_pred             EecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEEEeccCCh
Q 017490          183 LGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNK  261 (370)
Q Consensus       183 iGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~lP~t~  261 (370)
                      ||+|.||+.+|++++++|++|++||++.....                  ...+.+ ...++++++++||+|++|+|.++
T Consensus       161 IG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~------------------~~~~~g~~~~~l~e~l~~aDvVi~~vp~~~  222 (330)
T 2gcg_A          161 IGLGRIGQAIARRLKPFGVQRFLYTGRQPRPE------------------EAAEFQAEFVSTPELAAQSDFIVVACSLTP  222 (330)
T ss_dssp             ECCSHHHHHHHHHHGGGTCCEEEEESSSCCHH------------------HHHTTTCEECCHHHHHHHCSEEEECCCCCT
T ss_pred             ECcCHHHHHHHHHHHHCCCEEEEECCCCcchh------------------HHHhcCceeCCHHHHHhhCCEEEEeCCCCh
Confidence            99999999999999999999999998754310                  011111 12389999999999999999999


Q ss_pred             hhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceEEccCCCCccHH
Q 017490          262 QTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEH  341 (370)
Q Consensus       262 ~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~  341 (370)
                      +|+++++++.++.||+|++|||+|||+++|+++|.++|++|++.||++|||++||+++++|||++|||++|||+|+.|.+
T Consensus       223 ~t~~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~epl~~~~~l~~~~nvi~tPh~~~~t~~  302 (330)
T 2gcg_A          223 ATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHR  302 (330)
T ss_dssp             TTTTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECCSCTTCBHH
T ss_pred             HHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHcCCccEEEeCCCCCCCCCCCChhhcCCCEEECCCCCCCcHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCc
Q 017490          342 SYRSMAKVVGDVALQLHAGTPLTGL  366 (370)
Q Consensus       342 ~~~~~~~~~~~ni~~~~~g~~~~~~  366 (370)
                      +..++.+.+++|+.+|++|+++.|.
T Consensus       303 ~~~~~~~~~~~n~~~~~~g~~~~~~  327 (330)
T 2gcg_A          303 TRNTMSLLAANNLLAGLRGEPMPSE  327 (330)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCTTE
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCC
Confidence            9999999999999999999987653

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=100.00  E-value=1.5e-59  Score=458.26  Aligned_cols=302  Identities=28%  Similarity=0.422  Sum_probs=260.8

Q ss_pred             cEEEEeCCCCCCchhhHHHHHhcCCCceeee-CCCCChhhhcCcceEEEEe-CCCCCHHHHhcCCCCeEEEEeCcccCcc
Q 017490           37 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDV-VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLEGV  114 (370)
Q Consensus        37 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~i  114 (370)
                      +||+++.+. +  ... .+.++...++++.. .+.+++.+.++++|+++++ ..++++++++++|+||||++.|+|+|+|
T Consensus         3 ~~il~~~~~-~--~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~i   78 (333)
T 2d0i_A            3 PKVGVLLKM-K--REA-LEELKKYADVEIILYPSGEELKGVIGRFDGIIVSPTTKITREVLENAERLKVISCHSAGYDNI   78 (333)
T ss_dssp             SEEEECSCC-C--HHH-HHHHHTTSEEEECCSCCHHHHHHHGGGCSEEEECTTSCBCHHHHTTCTTCCEEEESSSCCTTB
T ss_pred             cEEEEECCC-C--HHH-HHHHHhcCCEEEeCCCCHHHHHHHhcCCEEEEECCCCCCCHHHHhhCCCceEEEECCcccccc
Confidence            578887643 2  222 23444332333322 2334566778899998864 4689999999999999999999999999


Q ss_pred             chhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC----CCc----ccccCceEEEEecC
Q 017490          115 DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV----PTG----ETLLGKTVFILGFG  186 (370)
Q Consensus       115 d~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~----~~~----~~l~g~tvGIiGlG  186 (370)
                      |+++++++||.|+|+||+   |+.+||||++++||++.|++..+++.+++|.|..    ..+    .+++|++|||||+|
T Consensus        79 d~~~~~~~gi~v~n~~~~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~l~g~~vgIIG~G  155 (333)
T 2d0i_A           79 DLEEATKRGIYVTKVSGL---LSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMG  155 (333)
T ss_dssp             CHHHHHHTTCEEECCCHH---HHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCHHHHHTTSCCCCCSTTCEEEEECCS
T ss_pred             cHHHHHhCCcEEEeCCCc---ChHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCcCcccccCCcccCCCCcCEEEEEccC
Confidence            999999999999999998   7899999999999999999999999999999963    235    78999999999999


Q ss_pred             chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEEEeccCChhhhc
Q 017490          187 NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTAG  265 (370)
Q Consensus       187 ~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~lP~t~~t~~  265 (370)
                      .||+.+|++++++||+|++||++.... .                  ....+ ...++++++++||+|++|+|.+++|++
T Consensus       156 ~iG~~vA~~l~~~G~~V~~~d~~~~~~-~------------------~~~~g~~~~~l~e~l~~aDiVil~vp~~~~t~~  216 (333)
T 2d0i_A          156 AIGKAIARRLIPFGVKLYYWSRHRKVN-V------------------EKELKARYMDIDELLEKSDIVILALPLTRDTYH  216 (333)
T ss_dssp             HHHHHHHHHHGGGTCEEEEECSSCCHH-H------------------HHHHTEEECCHHHHHHHCSEEEECCCCCTTTTT
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCcchh-h------------------hhhcCceecCHHHHHhhCCEEEEcCCCChHHHH
Confidence            999999999999999999999976431 0                  00111 124799999999999999999999999


Q ss_pred             ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCC-ceEEccCCCCccHHHHH
Q 017490          266 IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFK-NVLITPHVGGVTEHSYR  344 (370)
Q Consensus       266 li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~-nvilTPHia~~t~~~~~  344 (370)
                      +++++.++.||+| +|||+|||.++|+++|.++|++|+++||++|||++||++ ++|||++| ||++|||++++|.++..
T Consensus       217 ~i~~~~~~~mk~g-ilin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~-~~~L~~~~~nviltPh~~~~t~~~~~  294 (333)
T 2d0i_A          217 IINEERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVR-EHELFKYEWETVLTPHYAGLALEAQE  294 (333)
T ss_dssp             SBCHHHHHHTBTC-EEEECSCGGGBCHHHHHHHHHTTCBCEEEESCCSSSSCS-CCGGGGCTTTEEECCSCTTCCHHHHH
T ss_pred             HhCHHHHhhCCCC-EEEECCCCcccCHHHHHHHHHcCCceEEEecCCCCCCCC-CchHHcCCCCEEEcCccCCCcHHHHH
Confidence            9999999999999 999999999999999999999999999999999999987 99999999 99999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCCCCCc
Q 017490          345 SMAKVVGDVALQLHAGTPLTGL  366 (370)
Q Consensus       345 ~~~~~~~~ni~~~~~g~~~~~~  366 (370)
                      ++.+.+++|+.+|++|+++.|.
T Consensus       295 ~~~~~~~~n~~~~~~g~~~~~~  316 (333)
T 2d0i_A          295 DVGFRAVENLLKVLRGEVPEDL  316 (333)
T ss_dssp             HHHHHHHHHHHHHHTTCCCTTB
T ss_pred             HHHHHHHHHHHHHHcCCCCcCc
Confidence            9999999999999999987643

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=100.00  E-value=2.2e-59  Score=457.27  Aligned_cols=273  Identities=27%  Similarity=0.428  Sum_probs=249.0

Q ss_pred             CChhhhcCcceEEEEeC-CCCCHHHHhcCCCCeEEEEeCcccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHH
Q 017490           71 SDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML  149 (370)
Q Consensus        71 ~~~~~~~~~~d~~i~~~-~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L  149 (370)
                      +++.+.+.++|+++++. .++++++|+++|+||||++.|+|+|+||+++++++||.|+|+||+   |+.+||||++++||
T Consensus        37 ~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~---~~~~vAE~~~~~~L  113 (334)
T 2dbq_A           37 EILLKKVKEVDALVTMLSERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDV---LTDATADLAFALLL  113 (334)
T ss_dssp             HHHHHHTTSCSEEEECTTSCBCHHHHHTCTTCCEEEESSSCCTTBCHHHHHHTTCEEECCCST---THHHHHHHHHHHHH
T ss_pred             HHHHHHhcCcEEEEEcCCCCCCHHHHhhCCCceEEEECCcccccccHHHHHhCCCEEEeCCCc---CHHHHHHHHHHHHH
Confidence            45667788999988764 589999999999999999999999999999999999999999998   78999999999999


Q ss_pred             HHHHhHHHHHHHHHhcccC----C-----CCcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcccccccccc
Q 017490          150 GLLRKQNEMRMAIEQKKLG----V-----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQS  220 (370)
Q Consensus       150 ~~~R~~~~~~~~~~~~~~~----~-----~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~  220 (370)
                      ++.|++..+++.+++|.|.    .     ..+.++.|++|||||+|.||+.+|++++++|++|++||++.... .     
T Consensus       114 ~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~-~-----  187 (334)
T 2dbq_A          114 ATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKEE-V-----  187 (334)
T ss_dssp             HHHHTHHHHHHHHHTSHHHHTTCCCCTTTTCCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH-H-----
T ss_pred             HHHhCHHHHHHHHHcCCCcccccccccccccccCCCCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcchh-h-----
Confidence            9999999999999999995    1     13679999999999999999999999999999999999976431 0     


Q ss_pred             chhhhccccccccccccC-CCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 017490          221 SALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYL  299 (370)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL  299 (370)
                                   ....+ ...++++++++||+|++|+|.+++|+++++++.++.||+|++|||+|||.++|+++|.++|
T Consensus       188 -------------~~~~g~~~~~l~~~l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL  254 (334)
T 2dbq_A          188 -------------ERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKAL  254 (334)
T ss_dssp             -------------HHHHCCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHH
T ss_pred             -------------HhhcCcccCCHHHHHhhCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHH
Confidence                         00111 2357999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCceEEEEecCCCCCCCCCCcccCCCceEEccCCCCccHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 017490          300 ECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL  366 (370)
Q Consensus       300 ~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~  366 (370)
                      ++|+++||++|||++|| ++++|||++|||++|||+|+.|.++..++.+.+++|+.+|++|+++.++
T Consensus       255 ~~~~i~ga~lDv~~~EP-~~~~~L~~~~~vi~tPh~~~~t~~~~~~~~~~~~~n~~~~~~g~~~~~~  320 (334)
T 2dbq_A          255 KEGWIAGAGLDVFEEEP-YYNEELFKLDNVVLTPHIGSASFGAREGMAELVAKNLIAFKRGEIPPTL  320 (334)
T ss_dssp             HHTSSSEEEESCCSSSS-CCCHHHHHCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHHHTTCCCTTB
T ss_pred             HhCCeeEEEecCCCCCC-CCCchhhcCCCEEECCccCCCcHHHHHHHHHHHHHHHHHHHcCCCCccc
Confidence            99999999999999999 8889999999999999999999999999999999999999999988653

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=100.00  E-value=1.2e-59  Score=449.84  Aligned_cols=254  Identities=22%  Similarity=0.324  Sum_probs=229.8

Q ss_pred             hhcCcceEEEEeCCCCCHHHHhcCCCCeEEEEeCcccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHh
Q 017490           75 DVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK  154 (370)
Q Consensus        75 ~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~  154 (370)
                      +.++++|++++...++      ++|+||||++.|+|+|+||+++++++||.++|. |.   |+.+||||++++||++.|+
T Consensus        30 ~~~~~ad~li~~~~~~------~~~~Lk~I~~~~~G~d~id~~~~~~~~~~~~~~-~~---~~~~vAE~~~~~~L~~~R~   99 (290)
T 3gvx_A           30 PDYYDAEAQVIKDRYV------LGKRTKMIQAISAGVDHIDVNGIPENVVLCSNA-GA---YSISVAEHAFALLLAHAKN   99 (290)
T ss_dssp             TSCCCCSEEEESSCCC------CCSSCCEEEECSSCCTTSCGGGSCTTSEEECCH-HH---HHHHHHHHHHHHHHHHHTT
T ss_pred             cchhhhhhhhhhhhhh------hhhhhHHHHHHhcCCceeecCCCccceEEeecC-Cc---ceeeHHHHHHHHHHHHHHh
Confidence            6678999988744332      789999999999999999999999988877765 54   7899999999999999999


Q ss_pred             HHHHHHHHHhcccCCCCcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccc
Q 017490          155 QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV  234 (370)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (370)
                      +..+++.+++|.|.....++++|+||||||+|.||+++|+++++|||+|++|||+..+.                  +..
T Consensus       100 ~~~~~~~~~~g~w~~~~~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~------------------~~~  161 (290)
T 3gvx_A          100 ILENNELMKAGIFRQSPTTLLYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQ------------------NVD  161 (290)
T ss_dssp             HHHHHHHHHTTCCCCCCCCCCTTCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCT------------------TCS
T ss_pred             hhhhhhHhhhcccccCCceeeecchheeeccCchhHHHHHHHHhhCcEEEEEecccccc------------------ccc
Confidence            99999999999998766688999999999999999999999999999999999986541                  111


Q ss_pred             cccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCC
Q 017490          235 DEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWT  314 (370)
Q Consensus       235 ~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~  314 (370)
                      .   ...++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|++.||+||||++
T Consensus       162 ~---~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~  238 (290)
T 3gvx_A          162 V---ISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWN  238 (290)
T ss_dssp             E---ECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTT
T ss_pred             c---ccCChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccceEEeeccccC
Confidence            1   2358999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcccCCCceEEccCCC-CccHHHHHHHHHHHHHHHHHHHcCCC
Q 017490          315 EPFDPNDPILKFKNVLITPHVG-GVTEHSYRSMAKVVGDVALQLHAGTP  362 (370)
Q Consensus       315 EPl~~~~pL~~~~nvilTPHia-~~t~~~~~~~~~~~~~ni~~~~~g~~  362 (370)
                      ||+   +|||++|||++|||+| ++|.++.+++.+.+++|+.+|++|+-
T Consensus       239 EP~---~pL~~~~nvilTPHiag~~t~e~~~~~~~~~~~ni~~~~~~~~  284 (290)
T 3gvx_A          239 EPE---ITETNLRNAILSPHVAGGMSGEIMDIAIQLAFENVRNFFEGEG  284 (290)
T ss_dssp             TTS---CCSCCCSSEEECCSCSSCBTTBCCHHHHHHHHHHHHHHTC---
T ss_pred             Ccc---cchhhhhhhhcCccccCCccchHHHHHHHHHHHHHHhhhcCCC
Confidence            996   8999999999999999 89999999999999999999999874

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=100.00  E-value=1.4e-58  Score=455.97  Aligned_cols=280  Identities=21%  Similarity=0.308  Sum_probs=240.5

Q ss_pred             ccEEEEeCCCCCCchhhHHHHHhcCCCceeeeCCCCChhhhcCcceEEEEeC-CCCCHHHHhcCCCCeEEEEeCcccCcc
Q 017490           36 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGV  114 (370)
Q Consensus        36 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~-~~~~~~~l~~~~~Lk~I~~~~~G~d~i  114 (370)
                      ||||++.... +    +..++++...++.+.. ..+...+.+.++|+++++. .++++++++ .++||||++.|+|+|+|
T Consensus         3 mmkIl~~~~~-p----~~~~~~~~~~~v~~~~-~~~~~~~~l~~ad~li~~~~~~v~~~ll~-~~~Lk~I~~~~~G~D~i   75 (381)
T 3oet_A            3 AMKILVDENM-P----YARELFSRLGEVKAVP-GRPIPVEELNHADALMVRSVTKVNESLLS-GTPINFVGTATAGTDHV   75 (381)
T ss_dssp             CCEEEEETTS-T----THHHHHTTSSEEEEEC-C---CHHHHTTCSEEEECTTSCBSHHHHT-TSCCCEEEESSSCCTTB
T ss_pred             ceEEEECCCC-c----HHHHHHhhCCcEEEeC-CCCCCHHHHCCCEEEEECCCCCCCHHHHc-CCCCEEEEEcccccccc
Confidence            4899997643 3    2356666554333321 1222345688999988864 679999999 67799999999999999


Q ss_pred             chhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEecCchhHHHHH
Q 017490          115 DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAK  194 (370)
Q Consensus       115 d~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~  194 (370)
                      |+++++++||.|+|+||+   |+.+||||++++||++.|+.                +.+++|+||||||+|.||+++|+
T Consensus        76 D~~~~~~~gI~v~n~pg~---~~~~VAE~~l~~lL~l~r~~----------------g~~l~gktvGIIGlG~IG~~vA~  136 (381)
T 3oet_A           76 DEAWLKQAGIGFSAAPGC---NAIAVVEYVFSALLMLAERD----------------GFSLRDRTIGIVGVGNVGSRLQT  136 (381)
T ss_dssp             CHHHHHHTTCEEECCTTT---THHHHHHHHHHHHHHHHHHT----------------TCCGGGCEEEEECCSHHHHHHHH
T ss_pred             CHHHHHhCCEEEEECCCc---CcchhHHHHHHHHHHHHHhc----------------CCccCCCEEEEEeECHHHHHHHH
Confidence            999999999999999998   88999999999999999862                47899999999999999999999


Q ss_pred             HhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChh----hhcccCHH
Q 017490          195 RLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQ----TAGIVNKS  270 (370)
Q Consensus       195 ~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~----t~~li~~~  270 (370)
                      ++++|||+|++||++....                  +   ......++++++++||+|++|+|++++    |+++++++
T Consensus       137 ~l~a~G~~V~~~d~~~~~~------------------~---~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~~~  195 (381)
T 3oet_A          137 RLEALGIRTLLCDPPRAAR------------------G---DEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADET  195 (381)
T ss_dssp             HHHHTTCEEEEECHHHHHT------------------T---CCSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBCHH
T ss_pred             HHHHCCCEEEEECCChHHh------------------c---cCcccCCHHHHHhhCCEEEEcCcCCccccccchhhcCHH
Confidence            9999999999999743210                  0   111356899999999999999999999    99999999


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceEEccCCCCccHHHHHHHHHHH
Q 017490          271 FLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVV  350 (370)
Q Consensus       271 ~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~  350 (370)
                      .|+.||+|++|||+|||+++|+++|+++|++|++.||+||||++||++ +++||.++ +++|||+||+|.++..++...+
T Consensus       196 ~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDV~e~EP~~-~~~L~~~~-~i~TPHiag~t~e~~~~~~~~~  273 (381)
T 3oet_A          196 LIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEPDL-NVALLEAV-DIGTSHIAGYTLEGKARGTTQV  273 (381)
T ss_dssp             HHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTSC-CHHHHHHS-SEECSSCTTCCHHHHHHHHHHH
T ss_pred             HHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCCeEEEeeccccCCCC-cchhhhCC-EEECCccCcCcHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999975 56799875 8999999999999999999999


Q ss_pred             HHHHHHHHcCCCCC
Q 017490          351 GDVALQLHAGTPLT  364 (370)
Q Consensus       351 ~~ni~~~~~g~~~~  364 (370)
                      ++|+.+|++|.+-.
T Consensus       274 ~~~l~~~l~~~~~~  287 (381)
T 3oet_A          274 FEAYSAFIGREQRV  287 (381)
T ss_dssp             HHHHHHHTTCCCCC
T ss_pred             HHHHHHHHcCCccc
Confidence            99999999886543

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=100.00  E-value=1.3e-56  Score=462.13  Aligned_cols=301  Identities=27%  Similarity=0.441  Sum_probs=262.7

Q ss_pred             ccEEEEeCCCCCCchhhHHHHHhcCCCceeeeC---CCCChhhhcCcceEEEEe-CCCCCHHHHhcCCCCeEEEEeCccc
Q 017490           36 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVV---PISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGL  111 (370)
Q Consensus        36 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G~  111 (370)
                      +|||+++++..+..    .+.++..  +++...   +.+++.+.+.++|+++++ ..++++++|+++|+||||++.|+|+
T Consensus         4 ~~~vl~~~~~~~~~----~~~l~~~--~~v~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~i~~~~~G~   77 (529)
T 1ygy_A            4 LPVVLIADKLAPST----VAALGDQ--VEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGL   77 (529)
T ss_dssp             CCEEEECSSCCGGG----GTTSCSS--SEEEECCTTSHHHHHHHGGGCSEEEECSSSCBCHHHHHTCTTCCEEEESSSCC
T ss_pred             CcEEEEeCCCCHHH----HHHHhcC--ceEEEcCCCCHHHHHHHhcCCEEEEEcCCCCCCHHHHhhCCCCcEEEECCcCc
Confidence            46899987643221    1233332  333322   345677788999998875 4689999999999999999999999


Q ss_pred             CccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC--CCcccccCceEEEEecCchh
Q 017490          112 EGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PTGETLLGKTVFILGFGNIG  189 (370)
Q Consensus       112 d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~--~~~~~l~g~tvGIiGlG~IG  189 (370)
                      |+||+++|+++||.|+|+||+   |+.+||||++++||++.|+++.+++.+++|.|..  ..+.+++|++|||||+|.||
T Consensus        78 d~id~~~~~~~gi~v~n~p~~---~~~~vAE~~~~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~l~g~~vgIIG~G~IG  154 (529)
T 1ygy_A           78 DNVDVDAATARGVLVVNAPTS---NIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIG  154 (529)
T ss_dssp             TTBCHHHHHHTTCEEECCTTS---SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGGCCBCCCTTCEEEEECCSHHH
T ss_pred             CccCHhHHHhCCeEEEECCCc---chHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCcccCcCccccCCCEEEEEeeCHHH
Confidence            999999999999999999997   8899999999999999999999999999999964  35789999999999999999


Q ss_pred             HHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEEEeccCChhhhcccC
Q 017490          190 VELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTAGIVN  268 (370)
Q Consensus       190 ~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~lP~t~~t~~li~  268 (370)
                      +++|++|+++||+|++||++.....                   ..+.+ ...++++++++||+|++|+|.+++|+++++
T Consensus       155 ~~vA~~l~~~G~~V~~~d~~~~~~~-------------------a~~~g~~~~~l~e~~~~aDvV~l~~P~~~~t~~~i~  215 (529)
T 1ygy_A          155 QLVAQRIAAFGAYVVAYDPYVSPAR-------------------AAQLGIELLSLDDLLARADFISVHLPKTPETAGLID  215 (529)
T ss_dssp             HHHHHHHHTTTCEEEEECTTSCHHH-------------------HHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBC
T ss_pred             HHHHHHHHhCCCEEEEECCCCChhH-------------------HHhcCcEEcCHHHHHhcCCEEEECCCCchHHHHHhC
Confidence            9999999999999999998753210                   01111 124799999999999999999999999999


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceEEccCCCCccHHHHHHHHH
Q 017490          269 KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAK  348 (370)
Q Consensus       269 ~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~  348 (370)
                      ++.++.||+|+++||+|||+++|+++|.++|++|+++||++|||+.||+ +++|||++||+++|||++|.|.++.++++.
T Consensus       216 ~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~-~~~~L~~~~~vilTPh~~~~t~ea~~~~~~  294 (529)
T 1ygy_A          216 KEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPC-TDSPLFELAQVVVTPHLGASTAEAQDRAGT  294 (529)
T ss_dssp             HHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSC-SCCGGGGCTTEEECSSCSSCBHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCC-CCchHHhCCCEEEccccCCCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999995 689999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCC
Q 017490          349 VVGDVALQLHAGTPLTG  365 (370)
Q Consensus       349 ~~~~ni~~~~~g~~~~~  365 (370)
                      .+++|+.+++.|+++.+
T Consensus       295 ~~~~~l~~~l~~~~~~~  311 (529)
T 1ygy_A          295 DVAESVRLALAGEFVPD  311 (529)
T ss_dssp             HHHHHHHHHHTTCCCTT
T ss_pred             HHHHHHHHHHcCCCCCc
Confidence            99999999999988654

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=100.00  E-value=2.9e-56  Score=440.28  Aligned_cols=281  Identities=20%  Similarity=0.308  Sum_probs=239.8

Q ss_pred             cEEEEeCCCCCCchhhHHHHHhcCCCceeeeCCCCChhhhcCcceEEEEe-CCCCCHHHHhcCCCCeEEEEeCcccCccc
Q 017490           37 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLEGVD  115 (370)
Q Consensus        37 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id  115 (370)
                      |||++.... +.    ..++++....+.+.. ..+...+.+.++|+++++ ..++++++++ +|+||||++.|+|+|+||
T Consensus         1 mkil~~~~~-~~----~~~~~~~~~~v~~~~-~~~~~~~~l~~ad~li~~~~~~~~~~~l~-~~~Lk~I~~~~~G~D~iD   73 (380)
T 2o4c_A            1 MRILADENI-PV----VDAFFADQGSIRRLP-GRAIDRAALAEVDVLLVRSVTEVSRAALA-GSPVRFVGTCTIGTDHLD   73 (380)
T ss_dssp             CEEEEETTC-TT----HHHHHGGGSEEEEEC-GGGCSTTTTTTCSEEEECTTSCBCHHHHT-TSCCCEEEECSSCSTTBC
T ss_pred             CEEEEecCc-hH----HHHHHHhCCcEEEec-CCcCChHHHCCcEEEEEcCCCCCCHHHhc-CCCceEEEEcCcccchhh
Confidence            588887543 32    244555443333221 112234456899998876 4689999999 999999999999999999


Q ss_pred             hhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEecCchhHHHHHH
Q 017490          116 INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKR  195 (370)
Q Consensus       116 ~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~  195 (370)
                      +++++++||.|+|+||+   |+.+||||++++||++.|+.                +.+++|+||||||+|+||+++|++
T Consensus        74 ~~~~~~~gI~v~n~pg~---~~~~vAE~~l~~lL~l~r~~----------------~~~l~g~tvGIIGlG~IG~~vA~~  134 (380)
T 2o4c_A           74 LDYFAEAGIAWSSAPGC---NARGVVDYVLGCLLAMAEVR----------------GADLAERTYGVVGAGQVGGRLVEV  134 (380)
T ss_dssp             HHHHHHHTCEEECCTTT---THHHHHHHHHHHHHHHHHHH----------------TCCGGGCEEEEECCSHHHHHHHHH
T ss_pred             HHHHHhCCCEEEeCCCc---ChHHHHHHHHHHHHHHHhhh----------------hcccCCCEEEEEeCCHHHHHHHHH
Confidence            99999999999999998   88999999999999999973                368999999999999999999999


Q ss_pred             hccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChh----hhcccCHHH
Q 017490          196 LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQ----TAGIVNKSF  271 (370)
Q Consensus       196 l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~----t~~li~~~~  271 (370)
                      |++|||+|++||++....                  +   ......++++++++||+|++|+|++++    |+++++++.
T Consensus       135 l~~~G~~V~~~d~~~~~~------------------~---~g~~~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~~~~  193 (380)
T 2o4c_A          135 LRGLGWKVLVCDPPRQAR------------------E---PDGEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPR  193 (380)
T ss_dssp             HHHTTCEEEEECHHHHHH------------------S---TTSCCCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBCHHH
T ss_pred             HHHCCCEEEEEcCChhhh------------------c---cCcccCCHHHHHHhCCEEEEeccCccccccchhhhcCHHH
Confidence            999999999999753220                  0   001346899999999999999999999    999999999


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceEEccCCCCccHHHHHHHHHHHH
Q 017490          272 LSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVG  351 (370)
Q Consensus       272 l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~  351 (370)
                      |+.||+|++|||+|||+++|+++|+++|++|++.||+||||++||+ ++++||. +||++|||+||+|.++..++.+.++
T Consensus       194 l~~mk~gailIN~sRG~vvd~~aL~~aL~~g~i~~A~LDV~~~EP~-~~~~l~~-~nvi~TPHiag~t~e~~~~~~~~~~  271 (380)
T 2o4c_A          194 LAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQ-ADPELAA-RCLIATPHIAGYSLEGKLRGTAQIY  271 (380)
T ss_dssp             HHTSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTS-CCHHHHT-TCSEECSSCTTCCHHHHHHHHHHHH
T ss_pred             HhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCceEEeeeeccCCC-Cchhhcc-CCEEEccccCcCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999995 5677887 5999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCc
Q 017490          352 DVALQLHAGTPLTGL  366 (370)
Q Consensus       352 ~ni~~~~~g~~~~~~  366 (370)
                      +|+.+|++|++..++
T Consensus       272 ~nl~~~l~g~~~~~~  286 (380)
T 2o4c_A          272 QAYCAWRGIAERVSL  286 (380)
T ss_dssp             HHHHHHHTCCCCCCG
T ss_pred             HHHHHHHcCCCccch
Confidence            999999999875443

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=100.00  E-value=1.9e-37  Score=314.44  Aligned_cols=227  Identities=14%  Similarity=0.135  Sum_probs=190.1

Q ss_pred             CCCeEEE-EeCcccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccC
Q 017490           99 NQMKLIM-QFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLG  177 (370)
Q Consensus        99 ~~Lk~I~-~~~~G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g  177 (370)
                      |+++.|+ .+++|+|++  ++++++||.|+|+|++   |. +|||+       ++|++......++.+ |....+.++.|
T Consensus       212 ~~l~gi~eet~~Gvd~l--~a~~~~Gilv~n~~~v---n~-sVae~-------l~r~~~~~~~~l~~g-w~~~~g~~L~G  277 (494)
T 3d64_A          212 AHIKGVTEETTTGVHRL--YQMEKDGRLPFPAFNV---ND-SVTKS-------KFDNLYGCRESLVDG-IKRATDVMIAG  277 (494)
T ss_dssp             TTCCCEEECSHHHHHHH--HHHHHTTCCCSCEEEC---TT-SHHHH-------HHHHHHHHHTTHHHH-HHHHHCCCCTT
T ss_pred             hCcEEEEEEcccCHhhH--HHHHHCCCEEEECCCc---cH-HHHHH-------HHhhhHhhhhhhhhh-hhhccccccCC
Confidence            8999999 789999998  6899999999999998   66 99994       447776665556555 65445678999


Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEec
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  257 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  257 (370)
                      ++|||||+|.||+.+|+++++|||+|++||+++.+..                 +.........++++++++||+|++|+
T Consensus       278 ktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~-----------------~a~~~G~~~~~l~ell~~aDiVi~~~  340 (494)
T 3d64_A          278 KIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICAL-----------------QAAMEGYRVVTMEYAADKADIFVTAT  340 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHH-----------------HHHTTTCEECCHHHHTTTCSEEEECS
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHH-----------------HHHHcCCEeCCHHHHHhcCCEEEECC
Confidence            9999999999999999999999999999999764310                 00000112358999999999999997


Q ss_pred             cCChhhhcccCHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCC--CceEEccC
Q 017490          258 SLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL-LDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKF--KNVLITPH  334 (370)
Q Consensus       258 P~t~~t~~li~~~~l~~mk~gailIN~sRg~~-vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~--~nvilTPH  334 (370)
                          .|+++|+++.|+.||+|++|||+|||++ ||+++| ++|++|+|+    |+++.||+|.++|||.+  |||++| |
T Consensus       341 ----~t~~lI~~~~l~~MK~gAilINvgrg~veID~~aL-~AL~~g~I~----~~~Dv~plp~~~pL~~l~~~nvv~t-H  410 (494)
T 3d64_A          341 ----GNYHVINHDHMKAMRHNAIVCNIGHFDSEIDVAST-RQYQWENIK----PQVDHIIFPDGKRVILLAEGRLVNL-G  410 (494)
T ss_dssp             ----SSSCSBCHHHHHHCCTTEEEEECSSSSCSBCCGGG-TTSEEEEEE----TTEEEEECTTSCEEEEEGGGSBHHH-H
T ss_pred             ----CcccccCHHHHhhCCCCcEEEEcCCCcchhchHHH-HhhhcCccc----eeEEEEECCCCCchhhcCCCCEEEE-e
Confidence                6889999999999999999999999999 699999 999999997    45555588889999999  999999 9


Q ss_pred             CC-CccHH-HHHHHHHHHHHHHHHHHcCCCCCCc
Q 017490          335 VG-GVTEH-SYRSMAKVVGDVALQLHAGTPLTGL  366 (370)
Q Consensus       335 ia-~~t~~-~~~~~~~~~~~ni~~~~~g~~~~~~  366 (370)
                      +| |.+.+ ...+++.++++|+.+|++|+++.|.
T Consensus       411 ~atg~~~~~~~~~~a~~~~~ni~~~~~g~~~~n~  444 (494)
T 3d64_A          411 CATGHPSFVMSNSFTNQTLAQIELFTRGGEYANK  444 (494)
T ss_dssp             TSCCSCHHHHHHHHHHHHHHHHHHHHHGGGSCSS
T ss_pred             CcCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCCc
Confidence            99 66754 6778899999999999999887653

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=100.00  E-value=5.5e-37  Score=310.00  Aligned_cols=228  Identities=14%  Similarity=0.134  Sum_probs=195.6

Q ss_pred             CCCCeEEE-EeCcccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccc
Q 017490           98 ANQMKLIM-QFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLL  176 (370)
Q Consensus        98 ~~~Lk~I~-~~~~G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~  176 (370)
                      +|+++.|+ .+++|+|++  +++.++||.|+|+|++   |. +|||       +++|++......++.| |....+.++.
T Consensus       191 ~~~l~gi~eet~~Gvd~l--~a~~~~Gilv~p~~~v---n~-sVae-------~l~r~~~~~~~~l~~g-w~r~~~~~l~  256 (479)
T 1v8b_A          191 AKKIIGVSEETTTGVLRL--KKMDKQNELLFTAINV---ND-AVTK-------QKYDNVYGCRHSLPDG-LMRATDFLIS  256 (479)
T ss_dssp             HTTCCEEEECSHHHHHHH--HHHHHTTCCCSEEEEC---TT-SHHH-------HTTHHHHHHHHHHHHH-HHHHHCCCCT
T ss_pred             hcCeEEEEEeeCccHhHH--HHHHHcCCEEeccCCc---cH-HHHH-------HHHhchHhHHHHHhhh-hhhccccccC
Confidence            37999999 889999998  6899999999999997   66 9999       4568888777777777 7554567899


Q ss_pred             CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEe
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  256 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  256 (370)
                      |++|||||+|.||+.+|+++++|||+|++||+++.+...                 .........++++++++||+|++|
T Consensus       257 GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~-----------------a~~~g~~~~~l~ell~~aDiVi~~  319 (479)
T 1v8b_A          257 GKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQ-----------------AVMEGFNVVTLDEIVDKGDFFITC  319 (479)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHH-----------------HHTTTCEECCHHHHTTTCSEEEEC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHH-----------------HHHcCCEecCHHHHHhcCCEEEEC
Confidence            999999999999999999999999999999987643100                 000111235899999999999999


Q ss_pred             ccCChhhhcccCHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH--HHHhCCceEEEEecCCCCCCCCCCcccCC--CceEE
Q 017490          257 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL-LDYEAIAH--YLECGHLGGLGIDVAWTEPFDPNDPILKF--KNVLI  331 (370)
Q Consensus       257 lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~-vd~~aL~~--aL~~g~i~ga~lDV~~~EPl~~~~pL~~~--~nvil  331 (370)
                      +    .|+++|+++.|+.||+|++|||+|||++ ||+++|.+  +|++|+|+ +++|||   |+|+++|||.+  |||++
T Consensus       320 ~----~t~~lI~~~~l~~MK~gailiNvgrg~~EId~~aL~~~~AL~~g~I~-a~lDv~---plp~~~~l~~l~~~nvv~  391 (479)
T 1v8b_A          320 T----GNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVK-PQVDRI---TLPNGNKIIVLARGRLLN  391 (479)
T ss_dssp             C----SSSSSBCHHHHTTCCTTCEEEECSSTTTSBCHHHHHTSTTCEEEEEE-TTEEEE---ECTTSCEEEEEGGGSBHH
T ss_pred             C----ChhhhcCHHHHhhcCCCcEEEEeCCCCccccchhhhccccceeeeEe-eeEEEE---ECCCCCeeeEecCCCEEE
Confidence            4    6899999999999999999999999999 99999999  99999998 899998   55668999999  99999


Q ss_pred             ccCCC-CccHH-HHHHHHHHHHHHHHHHHcCC--CCCC
Q 017490          332 TPHVG-GVTEH-SYRSMAKVVGDVALQLHAGT--PLTG  365 (370)
Q Consensus       332 TPHia-~~t~~-~~~~~~~~~~~ni~~~~~g~--~~~~  365 (370)
                      | |+| |.+.+ ...+++.++++|+.+|++|+  ++.|
T Consensus       392 t-H~atghp~e~~~~s~a~~~~~ni~~~~~g~~~~l~n  428 (479)
T 1v8b_A          392 L-GCATGHPAFVMSFSFCNQTFAQLDLWQNKDTNKYEN  428 (479)
T ss_dssp             H-HSSCCSCHHHHHHHHHHHHHHHHHHHHTTTSSSCCS
T ss_pred             E-eccCCCCchhHHHHHHHHHHHHHHHHHcCCCCcCCc
Confidence            9 999 66766 67788899999999999998  7765

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=99.96  E-value=9.2e-29  Score=236.56  Aligned_cols=209  Identities=14%  Similarity=0.168  Sum_probs=157.6

Q ss_pred             ccEEEEeCCCCCCchhhHHHHHhcCCCceeeeCCC-----------CChhhhcCcceEEEEe-----------------C
Q 017490           36 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPI-----------SDVPDVIANYHLCVVK-----------------T   87 (370)
Q Consensus        36 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~d~~i~~-----------------~   87 (370)
                      .|||++++... ....+.+.+.+....+.+..++.           +++.+.++++|+++.+                 .
T Consensus         5 ~m~i~v~~~~~-~~~~~~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~~~~~~~~   83 (293)
T 3d4o_A            5 GKHVVIIGGDA-RQLEIIRKLSTFDAKISLVGFDQLDDGFIGVTKMRIDEVDWNTVDAILLPISGTNEAGKVDTIFSNES   83 (293)
T ss_dssp             TCEEEEECBCH-HHHHHHHHHHHTTCEEEEESCTTCC--CTTCEEECGGGCCGGGCSEEECCTTCCCTTCBCCBSSCSCC
T ss_pred             CcEEEEECCCH-HHHHHHHHHHhCCCEEEEeccccccccccccccccchHHHHhcCCEEEeccccccCCceeecccccCC
Confidence            36899987642 22233333333222333322221           4456677889988874                 2


Q ss_pred             CCCCHHHHhcCCCCeEEEEeCcccCccch-hhHhcCCeEEeccC------CCCCCCchhHHHHHHHHHHHHHHhHHHHHH
Q 017490           88 MRLDSNCISRANQMKLIMQFGVGLEGVDI-NAATRCGIKVARIP------GDVTGNAASCAELTIYLMLGLLRKQNEMRM  160 (370)
Q Consensus        88 ~~~~~~~l~~~~~Lk~I~~~~~G~d~id~-~~~~~~gI~V~n~p------g~~~~na~~vAE~~l~~~L~~~R~~~~~~~  160 (370)
                      .++++++++.+|+||+|+   +|+|++|+ ++++++||.|+|+|      ++   |+.+|||++++++|..         
T Consensus        84 ~~~~~~~l~~~~~l~~i~---~G~d~id~~~~~~~~gi~v~~~~~~~~~~~~---~~~svae~a~~~~l~~---------  148 (293)
T 3d4o_A           84 IVLTEEMIEKTPNHCVVY---SGISNTYLNQCMKKTNRTLVKLMERDDIAIY---NSIPTAEGTIMMAIQH---------  148 (293)
T ss_dssp             CBCCHHHHHTSCTTCEEE---ESSCCHHHHHHHHHHTCEEEEGGGCHHHHHH---HHHHHHHHHHHHHHHH---------
T ss_pred             ccchHHHHHhCCCCCEEE---ecCCCHHHHHHHHHcCCeEEEecCCceeeee---ccHhHHHHHHHHHHHh---------
Confidence            357999999999999997   79999998 89999999999998      65   7899999999988863         


Q ss_pred             HHHhcccCCCCcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCC
Q 017490          161 AIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCH  240 (370)
Q Consensus       161 ~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (370)
                                .+.++.|++|||||+|.||+.+|++++++|++|++|||+..+....              .+........
T Consensus       149 ----------~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~--------------~~~g~~~~~~  204 (293)
T 3d4o_A          149 ----------TDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARI--------------AEMGMEPFHI  204 (293)
T ss_dssp             ----------CSSCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH--------------HHTTSEEEEG
T ss_pred             ----------cCCCCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHH--------------HHCCCeecCh
Confidence                      1467999999999999999999999999999999999975431000              0000000012


Q ss_pred             CCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcc
Q 017490          241 EDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL  289 (370)
Q Consensus       241 ~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~  289 (370)
                      .++++++++||+|++|+|.     ++++++.++.||+|+++||++||+.
T Consensus       205 ~~l~~~l~~aDvVi~~~p~-----~~i~~~~l~~mk~~~~lin~ar~~~  248 (293)
T 3d4o_A          205 SKAAQELRDVDVCINTIPA-----LVVTANVLAEMPSHTFVIDLASKPG  248 (293)
T ss_dssp             GGHHHHTTTCSEEEECCSS-----CCBCHHHHHHSCTTCEEEECSSTTC
T ss_pred             hhHHHHhcCCCEEEECCCh-----HHhCHHHHHhcCCCCEEEEecCCCC
Confidence            4688999999999999996     6889999999999999999999764

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=99.94  E-value=2.7e-26  Score=219.99  Aligned_cols=212  Identities=15%  Similarity=0.193  Sum_probs=152.5

Q ss_pred             ccEEEEeCCCCCCchhhHHHHHhcCCCceeeeCCCC-----------ChhhhcCcceEEEE----e-----------CCC
Q 017490           36 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPIS-----------DVPDVIANYHLCVV----K-----------TMR   89 (370)
Q Consensus        36 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~d~~i~----~-----------~~~   89 (370)
                      .|||++++... ......+.+.+....+.+..++.+           ++.+.++++|+++.    .           ..+
T Consensus         7 ~mki~v~~~~~-~~~~~~~~L~~~g~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~a~~~   85 (300)
T 2rir_A            7 GLKIAVIGGDA-RQLEIIRKLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVFSNEE   85 (300)
T ss_dssp             SCEEEEESBCH-HHHHHHHHHHHTTCEEEEESCTTSSCCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSSCSSC
T ss_pred             CCEEEEECCCH-HHHHHHHHHHhCCCEEEEEeccccccccccceeccchHHHHhcCCEEEeccccccCCcccccccccCC
Confidence            46899997642 222333333332223333333322           24566778998876    2           356


Q ss_pred             --CCHHHHhcCCCCeEEEEeCcccCccc-hhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcc
Q 017490           90 --LDSNCISRANQMKLIMQFGVGLEGVD-INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKK  166 (370)
Q Consensus        90 --~~~~~l~~~~~Lk~I~~~~~G~d~id-~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~  166 (370)
                        +++++++.+|++|+|+   +|+|++| +++++++||.|+|+|++   +  ++         ++.|+++...     |.
T Consensus        86 ~~~~~~~l~~~~~l~~i~---~g~~~~d~~~~~~~~gi~v~~~~~~---~--~v---------~~~r~~~~~~-----g~  143 (300)
T 2rir_A           86 VVLKQDHLDRTPAHCVIF---SGISNAYLENIAAQAKRKLVKLFER---D--DI---------AIYNSIPTVE-----GT  143 (300)
T ss_dssp             EECCHHHHHTSCTTCEEE---ESSCCHHHHHHHHHTTCCEEEGGGS---H--HH---------HHHHHHHHHH-----HH
T ss_pred             ccchHHHHhhcCCCCEEE---EecCCHHHHHHHHHCCCEEEeecCC---C--ce---------EEEcCccHHH-----HH
Confidence              8899999999999998   8999999 99999999999999986   2  33         3356665442     33


Q ss_pred             cC---CCCcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCH
Q 017490          167 LG---VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDI  243 (370)
Q Consensus       167 ~~---~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  243 (370)
                      |.   ...+.+++|++|||||+|.||+.+|++++++|++|++|||+..+....              .+.........++
T Consensus       144 ~~~~~~~~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~--------------~~~g~~~~~~~~l  209 (300)
T 2rir_A          144 IMLAIQHTDYTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARI--------------TEMGLVPFHTDEL  209 (300)
T ss_dssp             HHHHHHTCSSCSTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH--------------HHTTCEEEEGGGH
T ss_pred             HHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHH--------------HHCCCeEEchhhH
Confidence            32   124678999999999999999999999999999999999975431000              0000000012578


Q ss_pred             HHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcc
Q 017490          244 FEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL  289 (370)
Q Consensus       244 ~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~  289 (370)
                      ++++++||+|++|+|.     ++++++.++.||+|+++||++||+.
T Consensus       210 ~~~l~~aDvVi~~~p~-----~~i~~~~~~~mk~g~~lin~a~g~~  250 (300)
T 2rir_A          210 KEHVKDIDICINTIPS-----MILNQTVLSSMTPKTLILDLASRPG  250 (300)
T ss_dssp             HHHSTTCSEEEECCSS-----CCBCHHHHTTSCTTCEEEECSSTTC
T ss_pred             HHHhhCCCEEEECCCh-----hhhCHHHHHhCCCCCEEEEEeCCCC
Confidence            8999999999999996     6889999999999999999999864

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=99.91  E-value=3.8e-26  Score=232.14  Aligned_cols=225  Identities=17%  Similarity=0.138  Sum_probs=172.6

Q ss_pred             CCCeEEE-EeCcccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccC
Q 017490           99 NQMKLIM-QFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLG  177 (370)
Q Consensus        99 ~~Lk~I~-~~~~G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g  177 (370)
                      ++++-+. ..|+|+|++  .++.++||.++|++++   |. +|||+.       +|++.........+ |....+..+.|
T Consensus       209 ~~i~GvveetgtGVd~l--~a~~~~Gilv~~~~~v---n~-sVae~~-------~r~l~~~~~s~~~g-~~r~~~~~l~G  274 (494)
T 3ce6_A          209 ESVKGVTEETTTGVLRL--YQFAAAGDLAFPAINV---ND-SVTKSK-------FDNKYGTRHSLIDG-INRGTDALIGG  274 (494)
T ss_dssp             HHCCCEEECSHHHHHHH--HHHHHTTCCCSCEEEC---TT-SHHHHT-------THHHHHHHHHHHHH-HHHHHCCCCTT
T ss_pred             cCeEEEEEEeCCChhHH--HHHHHcCCEEEecCCc---cH-HHHHHH-------HhhhhhhhhhhhHH-HHhccCCCCCc
Confidence            3444444 779999998  6789999999999997   65 899953       34443333222222 32112346899


Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEEEe
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCC  256 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~  256 (370)
                      ++|+|+|+|.||+.+|++++++|++|+++|+++.+..                  ...+.+ ...+++++++.+|+|+.|
T Consensus       275 ktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~------------------~A~~~Ga~~~~l~e~l~~aDvVi~a  336 (494)
T 3ce6_A          275 KKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINAL------------------QAMMEGFDVVTVEEAIGDADIVVTA  336 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHH------------------HHHHTTCEECCHHHHGGGCSEEEEC
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHH------------------HHHHcCCEEecHHHHHhCCCEEEEC
Confidence            9999999999999999999999999999998764411                  011111 235788899999999999


Q ss_pred             ccCChhhhcccCHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH-HHHhCCceEEEEecCCCCCCCCCCc--ccCCCceE--
Q 017490          257 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL-LDYEAIAH-YLECGHLGGLGIDVAWTEPFDPNDP--ILKFKNVL--  330 (370)
Q Consensus       257 lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~-vd~~aL~~-aL~~g~i~ga~lDV~~~EPl~~~~p--L~~~~nvi--  330 (370)
                      ++    +.++++.+.++.||+|++++|+||+.. +|+++|.. +|+++.+. +++|+|+.++.  +++  |+..+|++  
T Consensus       337 tg----t~~~i~~~~l~~mk~ggilvnvG~~~~eId~~aL~~~aL~~~~I~-~~ldv~~~~~~--~~~l~LL~~grlvnL  409 (494)
T 3ce6_A          337 TG----NKDIIMLEHIKAMKDHAILGNIGHFDNEIDMAGLERSGATRVNVK-PQVDLWTFGDT--GRSIIVLSEGRLLNL  409 (494)
T ss_dssp             SS----SSCSBCHHHHHHSCTTCEEEECSSSGGGBCHHHHHHTTCEEEEEE-TTEEEEECTTT--CCEEEEEGGGSCHHH
T ss_pred             CC----CHHHHHHHHHHhcCCCcEEEEeCCCCCccCHHHHHHhhhccceEE-EEEEEeecCCc--chHHHHHhCCCEEec
Confidence            75    556889899999999999999999999 99999998 88888888 66899876432  454  66678888  


Q ss_pred             --EccCCCCccHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 017490          331 --ITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTG  365 (370)
Q Consensus       331 --lTPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~  365 (370)
                        +|||+++.+.++   +...+.+++..+.+|+++.+
T Consensus       410 ~~~TPH~a~~~~~s---~~~qa~~ai~~~~~g~~~~~  443 (494)
T 3ce6_A          410 GNATGHPSFVMSNS---FANQTIAQIELWTKNDEYDN  443 (494)
T ss_dssp             HHSCCSCHHHHHHH---HHHHHHHHHHHHHTGGGCCS
T ss_pred             cCCCCCccccchHH---HHHHHHHHHHHHHcCCCCCC
Confidence              999999988765   47788999999998876543

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=99.91  E-value=3.8e-24  Score=211.56  Aligned_cols=226  Identities=15%  Similarity=0.159  Sum_probs=168.8

Q ss_pred             hhcCcceEEEEeCCCCCHHHHhcCCCCeEEEEeCcccCccchhhHhcCCeEEe----------ccCCCCCCCchhHHHHH
Q 017490           75 DVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVA----------RIPGDVTGNAASCAELT  144 (370)
Q Consensus        75 ~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~----------n~pg~~~~na~~vAE~~  144 (370)
                      +.+.++|+++....++++++....|+..++.....++|...++++.++||.+.          |.|.+     .++||++
T Consensus        63 ~~~~~adii~~vk~p~~~e~~~l~~~~~l~~~~~~~~~~~~l~~l~~~gi~~ia~e~v~~~~~~~p~~-----s~~ae~a  137 (377)
T 2vhw_A           63 QVWADADLLLKVKEPIAAEYGRLRHGQILFTFLHLAASRACTDALLDSGTTSIAYETVQTADGALPLL-----APMSEVA  137 (377)
T ss_dssp             HHHHHCSEEECSSCCCGGGGGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTT-----HHHHHHH
T ss_pred             HHhccCCEEEEeCCCChHHHhhcCCCCEEEEEecccCCHHHHHHHHHcCCeEEEeeeccccCCCcccc-----CchHHHH
Confidence            44557898766667778888777889888888888899999999999999997          55655     4678999


Q ss_pred             HHHHHHHH-HhHHHHHHHHHhcccCC-CCcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccch
Q 017490          145 IYLMLGLL-RKQNEMRMAIEQKKLGV-PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSA  222 (370)
Q Consensus       145 l~~~L~~~-R~~~~~~~~~~~~~~~~-~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~  222 (370)
                      .++++.+. |++.    ..+.++|.. ....++.|++|+|+|+|.||+.+|+.++++|++|+++|++..+.......   
T Consensus       138 g~~a~~~a~r~l~----~~~~g~~~~~~~~~~l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~---  210 (377)
T 2vhw_A          138 GRLAAQVGAYHLM----RTQGGRGVLMGGVPGVEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAE---  210 (377)
T ss_dssp             HHHHHHHHHHHTS----GGGTSCCCCTTCBTTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHH----HhcCCCcccccCCCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHh---
Confidence            86665555 6652    223343321 12247899999999999999999999999999999999976431100000   


Q ss_pred             hhhccccccccccccCCCCCHHHHHhcCCEEEEec--cCChhhhcccCHHHHhcCCCCcEEEEcC--CCcccCHHHHHHH
Q 017490          223 LAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL--SLNKQTAGIVNKSFLSSMKKGSLLVNIA--RGGLLDYEAIAHY  298 (370)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l--P~t~~t~~li~~~~l~~mk~gailIN~s--Rg~~vd~~aL~~a  298 (370)
                      +    +  ...........+++++++++|+|+.++  |.+ ++.++++++.++.||+|+++||+|  +|+          
T Consensus       211 ~----g--~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~~-~t~~li~~~~l~~mk~g~~iV~va~~~Gg----------  273 (377)
T 2vhw_A          211 F----C--GRIHTRYSSAYELEGAVKRADLVIGAVLVPGA-KAPKLVSNSLVAHMKPGAVLVDIAIDQGG----------  273 (377)
T ss_dssp             T----T--TSSEEEECCHHHHHHHHHHCSEEEECCCCTTS-CCCCCBCHHHHTTSCTTCEEEEGGGGTTC----------
T ss_pred             c----C--CeeEeccCCHHHHHHHHcCCCEEEECCCcCCC-CCcceecHHHHhcCCCCcEEEEEecCCCC----------
Confidence            0    0  000000001235778889999999976  544 788999999999999999999999  332          


Q ss_pred             HHhCCceEEEEecCCC-CCCCCCCcccCCCceE--EccCCCCccHH
Q 017490          299 LECGHLGGLGIDVAWT-EPFDPNDPILKFKNVL--ITPHVGGVTEH  341 (370)
Q Consensus       299 L~~g~i~ga~lDV~~~-EPl~~~~pL~~~~nvi--lTPHia~~t~~  341 (370)
                                  ||+. ||.+.++|+|..+||+  +|||+++.+..
T Consensus       274 ------------v~e~~ep~~~~~~~~~~~~v~i~~~phl~~~~~~  307 (377)
T 2vhw_A          274 ------------CFEGSRPTTYDHPTFAVHDTLFYCVANMPASVPK  307 (377)
T ss_dssp             ------------SBTTCCCBCSSSCEEEETTEEEECBTTGGGGSHH
T ss_pred             ------------ccccccCCCCCCCEEEECCEEEEecCCcchhhHH
Confidence                        7888 9988899999999998  99999999866

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=99.83  E-value=8.5e-22  Score=196.71  Aligned_cols=155  Identities=22%  Similarity=0.277  Sum_probs=123.2

Q ss_pred             ccc-ccCceEEEEecCchhHHHHHHhcc-CCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhc
Q 017490          172 GET-LLGKTVFILGFGNIGVELAKRLRP-FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK  249 (370)
Q Consensus       172 ~~~-l~g~tvGIiGlG~IG~~vA~~l~~-~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  249 (370)
                      +.+ |+|+||||+|+|+||+.+|+++++ |||+|+++++.....                    ....  ..+++++++.
T Consensus       206 G~~~l~gktvgI~G~G~VG~~vA~~l~~~~G~kVv~~sD~~g~~--------------------~~~~--gvdl~~L~~~  263 (419)
T 1gtm_A          206 GWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGI--------------------YNPD--GLNADEVLKW  263 (419)
T ss_dssp             TCSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEE--------------------EEEE--EECHHHHHHH
T ss_pred             CCcccCCCEEEEEcCCHHHHHHHHHHHHhcCCEEEEEeCCCccc--------------------cCcc--CCCHHHHHHH
Confidence            566 999999999999999999999999 999999995432210                    0000  1256666654


Q ss_pred             CCE-EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCC-CcccCCC
Q 017490          250 ADV-VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPN-DPILKFK  327 (370)
Q Consensus       250 aDi-V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~-~pL~~~~  327 (370)
                      +|. .++ +|+ ++|++ |+.+.|..||+ .+|||++||++||+++ +++|+++.|.+++     +||++++ ++||.++
T Consensus       264 ~d~~~~l-~~l-~~t~~-i~~~~l~~mk~-dilIn~ArG~~Vde~a-~~aL~~~~I~~aA-----neP~t~~a~~ll~~~  333 (419)
T 1gtm_A          264 KNEHGSV-KDF-PGATN-ITNEELLELEV-DVLAPAAIEEVITKKN-ADNIKAKIVAEVA-----NGPVTPEADEILFEK  333 (419)
T ss_dssp             HHHHSSS-TTC-TTSEE-ECHHHHHHSCC-SEEEECSCSCCBCTTG-GGGCCCSEEECCS-----SSCBCHHHHHHHHHT
T ss_pred             HHhcCEe-ecC-ccCee-eCHHHHHhCCC-CEEEECCCcccCCHHH-HHHhcCCEEEEee-----CCCCCcchHHHHhcC
Confidence            443 222 566 67888 89999999998 5999999999999999 6999999999887     8998765 7999999


Q ss_pred             ceEEccCC----C-----------------CccHHHHHHHHHHHHHHHHHHH
Q 017490          328 NVLITPHV----G-----------------GVTEHSYRSMAKVVGDVALQLH  358 (370)
Q Consensus       328 nvilTPHi----a-----------------~~t~~~~~~~~~~~~~ni~~~~  358 (370)
                      ||++|||+    |                 +.+++...++.+.+.+++.+++
T Consensus       334 ~V~itPhiaaNaGGvt~s~~E~~qn~~~~~w~~~ev~~~l~~~m~~~~~~~~  385 (419)
T 1gtm_A          334 GILQIPDFLCNAGGVTVSYFEWVQNITGYYWTIEEVRERLDKKMTKAFYDVY  385 (419)
T ss_dssp             TCEEECHHHHTTHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEECchhhhCCcceeeeehhhhcccccccCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999    6                 5567788888888888887765

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=99.80  E-value=3.8e-20  Score=182.33  Aligned_cols=252  Identities=16%  Similarity=0.173  Sum_probs=158.8

Q ss_pred             hcCcceEEEEeCCCCCHHHHhcC-CCCeEEEEeCcccCccchhhHhcCCeEEe---ccCCCCCCCc---hhHHHHHH--H
Q 017490           76 VIANYHLCVVKTMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVA---RIPGDVTGNA---ASCAELTI--Y  146 (370)
Q Consensus        76 ~~~~~d~~i~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~V~---n~pg~~~~na---~~vAE~~l--~  146 (370)
                      .+ ++|+++....++.++ ++.+ |++++|.....+.|..+++.+.++||.+.   +.+.. .++-   .++++.+-  +
T Consensus        63 ~~-~ad~il~vk~p~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gi~~ia~e~~~~~-~~~~~~l~~~s~~ag~~a  139 (369)
T 2eez_A           63 AW-GAEMVVKVKEPLPEE-YGFLREGLILFTYLHLAADRGLTEAMLRSGVTGIAYETVQLP-DGTLPLLVPMSEVAGRMA  139 (369)
T ss_dssp             HT-TSSEEECSSCCCGGG-GGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCT-TCCCTTTHHHHHHHHHHH
T ss_pred             ee-cCCEEEEECCCCHHH-HhhcCCCcEEEEEecccCCHHHHHHHHHCCCeEEEeeccccc-cCCeeecccchHHHHHHH
Confidence            44 789887655566444 6665 78999999999999999999999999998   55543 1111   34555554  2


Q ss_pred             HHHHHHHhHHHHHHHHH-hcccCCCCcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhh
Q 017490          147 LMLGLLRKQNEMRMAIE-QKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAV  225 (370)
Q Consensus       147 ~~L~~~R~~~~~~~~~~-~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~  225 (370)
                      .+ ..++.+...   .. ++.|... ..++++++|+|+|.|.||+.+|+.++++|++|+++|++..+.......   +  
T Consensus       140 v~-~a~~~l~~~---~~g~~~~~~~-~~~l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~---~--  209 (369)
T 2eez_A          140 PQ-VGAQFLEKP---KGGRGVLLGG-VPGVAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDV---F--  209 (369)
T ss_dssp             HH-HHHHHTSGG---GTSCCCCTTC-BTBBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---T--
T ss_pred             HH-HHHHHHHHh---cCCCceecCC-CCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh---c--
Confidence            22 222222211   11 0112111 246899999999999999999999999999999999875431100000   0  


Q ss_pred             ccccccccccccCCCCCHHHHHhcCCEEEEeccCCh-hhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 017490          226 KNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNK-QTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHL  304 (370)
Q Consensus       226 ~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~-~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i  304 (370)
                        +  ...........+++++++.+|+|+.|++... .+..++.++.++.||+|+++||+|-.             .|  
T Consensus       210 --g--~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~~~-------------~g--  270 (369)
T 2eez_A          210 --G--GRVITLTATEANIKKSVQHADLLIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVAVD-------------QG--  270 (369)
T ss_dssp             --T--TSEEEEECCHHHHHHHHHHCSEEEECCC-------CCSCHHHHTTSCTTCEEEECC-------------------
T ss_pred             --C--ceEEEecCCHHHHHHHHhCCCEEEECCCCCccccchhHHHHHHHhhcCCCEEEEEecC-------------CC--
Confidence              0  0000000012457788899999999998765 57788899999999999999999832             12  


Q ss_pred             eEEEEecCCCCCCCCCCcccCCCceE---------EccCCCCc--cHHHHHHHHHHHHHHHHHHHcCCCC
Q 017490          305 GGLGIDVAWTEPFDPNDPILKFKNVL---------ITPHVGGV--TEHSYRSMAKVVGDVALQLHAGTPL  363 (370)
Q Consensus       305 ~ga~lDV~~~EPl~~~~pL~~~~nvi---------lTPHia~~--t~~~~~~~~~~~~~ni~~~~~g~~~  363 (370)
                       |+ +||+  ||.+.++|++..+|+.         .|||+|+.  +.+....+.+.+.+++..+..++.+
T Consensus       271 -g~-~d~~--ep~~~~~~~~~~~~v~~~~v~~lp~~~p~~as~~~~~~~~~~l~~l~~~g~~~~~~~~~l  336 (369)
T 2eez_A          271 -GC-VETI--RPTTHAEPTYVVDGVVHYGVANMPGAVPRTSTFALTNQTLPYVLKLAEKGLDALLEDAAL  336 (369)
T ss_dssp             -------------------CEETTEEEECCSCSGGGSHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCHHH
T ss_pred             -CC-CCcc--cCCCCCCCEEEECCEEEEeeCCcchhcHHHHHHHHHHHHHHHHHHHHhcChhhhhcChHH
Confidence             44 9998  7777788999999999         88998874  5677788888888888667766544

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=99.73  E-value=4.7e-18  Score=169.19  Aligned_cols=201  Identities=16%  Similarity=0.185  Sum_probs=133.3

Q ss_pred             ceEEEEeCCCCCHHHHhcC-CCCeEEEEeCcccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHH
Q 017490           80 YHLCVVKTMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEM  158 (370)
Q Consensus        80 ~d~~i~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~  158 (370)
                      +|+++.... .+++.++.+ |++++|+..+.|+|++|++++.++||.|.+.        +.|+|++.++.|.+++.....
T Consensus        73 adiil~vk~-p~~~~i~~l~~~~~li~~~~~~~d~~~~~al~~~gI~v~~~--------e~v~~~~~a~~l~~l~~~a~~  143 (401)
T 1x13_A           73 SEIILKVNA-PLDDEIALLNPGTTLVSFIWPAQNPELMQKLAERNVTVMAM--------DSVPRISRAQSLDALSSMANI  143 (401)
T ss_dssp             SSEEECSSC-CCHHHHTTCCTTCEEEECCCGGGCHHHHHHHHHTTCEEEEG--------GGCCCSGGGGGGCHHHHHHHH
T ss_pred             CCeEEEeCC-CCHHHHHHhcCCCcEEEEecCCCCHHHHHHHHHCCCEEEEe--------ehhhhhhhhcccchHHHHHHH
Confidence            888775433 457778886 7999999999999999999999999999743        456666665544344333322


Q ss_pred             --HHHHHhccc--CCC-Ccc-----cccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccc
Q 017490          159 --RMAIEQKKL--GVP-TGE-----TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNG  228 (370)
Q Consensus       159 --~~~~~~~~~--~~~-~~~-----~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~  228 (370)
                        ...++.+.|  ... .+.     ++.|++|+|+|+|.||..+++.++++|++|+++|+++............+...+.
T Consensus       144 ag~~av~~~~~~~~~~~~~~~~~~g~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~  223 (401)
T 1x13_A          144 AGYRAIVEAAHEFGRFFTGQITAAGKVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDF  223 (401)
T ss_dssp             HHHHHHHHHHHHCSSCSSCEEETTEEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC--
T ss_pred             HHHHHHHHHHHhcccccCCceeeccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecc
Confidence              223332222  111 111     5789999999999999999999999999999999986542110000000000000


Q ss_pred             cccccccccC------C-------CCCHHHHHhcCCEEEEe--ccCChhhhcccCHHHHhcCCCCcEEEEcC--CCcccC
Q 017490          229 IIDDLVDEKG------C-------HEDIFEFASKADVVVCC--LSLNKQTAGIVNKSFLSSMKKGSLLVNIA--RGGLLD  291 (370)
Q Consensus       229 ~~~~~~~~~~------~-------~~~l~ell~~aDiV~l~--lP~t~~t~~li~~~~l~~mk~gailIN~s--Rg~~vd  291 (370)
                        .+.....+      .       ..++++++..+|+|+.|  +|.. .+..+++++.++.||+|+++||+|  ||+.++
T Consensus       224 --~~~~~~~~g~~~~~~~~~~~~~~~~l~e~~~~aDvVI~~~~~pg~-~ap~li~~~~l~~mk~g~vIVdva~~~Gg~v~  300 (401)
T 1x13_A          224 --KEEAGSGDGYAKVMSDAFIKAEMELFAAQAKEVDIIVTTALIPGK-PAPKLITREMVDSMKAGSVIVDLAAQNGGNCE  300 (401)
T ss_dssp             --------CCHHHHHHSHHHHHHHHHHHHHHHHHCSEEEECCCCTTS-CCCCCBCHHHHHTSCTTCEEEETTGGGTCSBT
T ss_pred             --cccccccccchhhccHHHHHHHHHHHHHHhCCCCEEEECCccCCC-CCCeeeCHHHHhcCCCCcEEEEEcCCCCCCcC
Confidence              00000000      0       01367888899999999  5532 366889999999999999999999  888665


Q ss_pred             H
Q 017490          292 Y  292 (370)
Q Consensus       292 ~  292 (370)
                      +
T Consensus       301 ~  301 (401)
T 1x13_A          301 Y  301 (401)
T ss_dssp             T
T ss_pred             c
Confidence            4

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=99.71  E-value=2.1e-17  Score=164.52  Aligned_cols=155  Identities=15%  Similarity=0.203  Sum_probs=111.5

Q ss_pred             eCcccCccc-hhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEec
Q 017490          107 FGVGLEGVD-INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF  185 (370)
Q Consensus       107 ~~~G~d~id-~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGl  185 (370)
                      +++|+..+. +....+.+|+|.|++..       +.++.+-........+....  .+.      .+.++.|++|||+|+
T Consensus       155 TttGv~rL~~~~~~g~L~iPVinvnds-------vtk~~~Dn~~Gt~~slldgi--~ra------tg~~L~GktVgIiG~  219 (436)
T 3h9u_A          155 TTTGVKNLYKRLQRGKLTIPAMNVNDS-------VTKSKFDNLYGCRESLVDGI--KRA------TDVMIAGKTACVCGY  219 (436)
T ss_dssp             SHHHHHHHHHHHHHTCCCSCEEECTTS-------HHHHTTHHHHHHHHHHHHHH--HHH------HCCCCTTCEEEEECC
T ss_pred             cCcChHHHHHHHHcCCCCCceEeechh-------hhhhhhhccccchHHHHHHH--HHh------cCCcccCCEEEEEee
Confidence            355655442 33456789999998754       44443333332222221111  111      156799999999999


Q ss_pred             CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEEEeccCChhhh
Q 017490          186 GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTA  264 (370)
Q Consensus       186 G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~lP~t~~t~  264 (370)
                      |.||+.+|++|+++|++|+++|+++.+..                  .....+ ...++++++++||+|++    ++.|+
T Consensus       220 G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~------------------~A~~~G~~~~sL~eal~~ADVVil----t~gt~  277 (436)
T 3h9u_A          220 GDVGKGCAAALRGFGARVVVTEVDPINAL------------------QAAMEGYQVLLVEDVVEEAHIFVT----TTGND  277 (436)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEECSCHHHHH------------------HHHHTTCEECCHHHHTTTCSEEEE----CSSCS
T ss_pred             CHHHHHHHHHHHHCCCEEEEECCChhhhH------------------HHHHhCCeecCHHHHHhhCCEEEE----CCCCc
Confidence            99999999999999999999998754310                  001111 34589999999999996    45688


Q ss_pred             cccCHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHH
Q 017490          265 GIVNKSFLSSMKKGSLLVNIARGGL-LDYEAIAHY  298 (370)
Q Consensus       265 ~li~~~~l~~mk~gailIN~sRg~~-vd~~aL~~a  298 (370)
                      ++|+++.|+.||+|++|||+|||.+ ||.++|.+.
T Consensus       278 ~iI~~e~l~~MK~gAIVINvgRg~vEID~~~L~~~  312 (436)
T 3h9u_A          278 DIITSEHFPRMRDDAIVCNIGHFDTEIQVAWLKAN  312 (436)
T ss_dssp             CSBCTTTGGGCCTTEEEEECSSSGGGBCHHHHHHH
T ss_pred             CccCHHHHhhcCCCcEEEEeCCCCCccCHHHHHhh
Confidence            9999999999999999999999997 999998764

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=99.67  E-value=1.4e-16  Score=158.67  Aligned_cols=154  Identities=16%  Similarity=0.170  Sum_probs=110.4

Q ss_pred             eCcccCccc-hhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEec
Q 017490          107 FGVGLEGVD-INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF  185 (370)
Q Consensus       107 ~~~G~d~id-~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGl  185 (370)
                      +++|+-.+- ....-...+++.|+.+       ++..+-+--.....+.+.....  |.      .+..+.||||||+|+
T Consensus       191 TtTGv~rL~~m~~~g~L~~PvinVnd-------s~tK~~fDn~yG~~eslvdgI~--Ra------tg~~L~GKTVgVIG~  255 (464)
T 3n58_A          191 TTTGVNRLYQLQKKGLLPFPAINVND-------SVTKSKFDNKYGCKESLVDGIR--RG------TDVMMAGKVAVVCGY  255 (464)
T ss_dssp             SHHHHHHHHHHHHHTCCCSCEEECTT-------SHHHHTTHHHHHHHHHHHHHHH--HH------HCCCCTTCEEEEECC
T ss_pred             cccchHHHHHHHHcCCCCCCEEeecc-------HhhhhhhhhhhcchHHHHHHHH--Hh------cCCcccCCEEEEECc
Confidence            355554432 1222345688888643       4566555555554444333221  11      156899999999999


Q ss_pred             CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEEEeccCChhhh
Q 017490          186 GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTA  264 (370)
Q Consensus       186 G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~lP~t~~t~  264 (370)
                      |.||+.+|+++++|||+|+++|+++....                 . ....+ ...++++++++||+|+++.    .|+
T Consensus       256 G~IGr~vA~~lrafGa~Viv~d~dp~~a~-----------------~-A~~~G~~vv~LeElL~~ADIVv~at----gt~  313 (464)
T 3n58_A          256 GDVGKGSAQSLAGAGARVKVTEVDPICAL-----------------Q-AAMDGFEVVTLDDAASTADIVVTTT----GNK  313 (464)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEECSSHHHHH-----------------H-HHHTTCEECCHHHHGGGCSEEEECC----SSS
T ss_pred             CHHHHHHHHHHHHCCCEEEEEeCCcchhh-----------------H-HHhcCceeccHHHHHhhCCEEEECC----CCc
Confidence            99999999999999999999998653210                 0 00111 2357999999999999863    478


Q ss_pred             cccCHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 017490          265 GIVNKSFLSSMKKGSLLVNIARGGL-LDYEAIAH  297 (370)
Q Consensus       265 ~li~~~~l~~mk~gailIN~sRg~~-vd~~aL~~  297 (370)
                      ++|+++.|+.||+|++|||+|||.+ +|.++|.+
T Consensus       314 ~lI~~e~l~~MK~GAILINvGRgdvEID~~aL~~  347 (464)
T 3n58_A          314 DVITIDHMRKMKDMCIVGNIGHFDNEIQVAALRN  347 (464)
T ss_dssp             SSBCHHHHHHSCTTEEEEECSSSTTTBTCGGGTT
T ss_pred             cccCHHHHhcCCCCeEEEEcCCCCcccCHHHHHh
Confidence            9999999999999999999999998 99988874

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=99.67  E-value=4.1e-16  Score=154.30  Aligned_cols=209  Identities=14%  Similarity=0.180  Sum_probs=131.1

Q ss_pred             hhcCcceEEEEeCCCC----CHHHHhcCC-CCeEEEEeCcccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHH
Q 017490           75 DVIANYHLCVVKTMRL----DSNCISRAN-QMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML  149 (370)
Q Consensus        75 ~~~~~~d~~i~~~~~~----~~~~l~~~~-~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L  149 (370)
                      +.+.++|+++....++    +++.++.++ ++++|.....+.|+.+++++.++||.+++. .+..   ..+++..+. +|
T Consensus        63 ~~~~~adiil~v~~p~~~~~~~~~i~~l~~~~~~i~~~~~~~~~~~~~~~~~~gi~~~~~-e~~~---~~~~~~~l~-~l  137 (384)
T 1l7d_A           63 QALSQADVVWKVQRPMTAEEGTDEVALIKEGAVLMCHLGALTNRPVVEALTKRKITAYAM-ELMP---RISRAQSMD-IL  137 (384)
T ss_dssp             HHHSSCSEEEEEECCCCGGGSCCGGGGSCTTCEEEEECCGGGCHHHHHHHHHTTCEEEEG-GGCC---CSGGGGGGC-HH
T ss_pred             hhhcCCCEEEEecCcccccCCHHHHHhhccCCEEEEEecccCCHHHHHHHHHCCCEEEEe-cccc---ccccccccc-hh
Confidence            4567899888766676    788899886 699999999999999999999999999974 1111   111222222 22


Q ss_pred             HHHHhHHHHHHHHHhccc-----CCC--Cc-ccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccc
Q 017490          150 GLLRKQNEMRMAIEQKKL-----GVP--TG-ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSS  221 (370)
Q Consensus       150 ~~~R~~~~~~~~~~~~~~-----~~~--~~-~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~  221 (370)
                      +..+.+. ....+..+.|     ...  .+ .++.|++|+|+|+|.||+.+++.++++|++|+++|++..+.........
T Consensus       138 ~~~a~~a-g~~av~~~~~~~~~~~~~~~~~~~~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga  216 (384)
T 1l7d_A          138 SSQSNLA-GYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGG  216 (384)
T ss_dssp             HHHHHHH-HHHHHHHHHHHCSSCSSCEEETTEEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTC
T ss_pred             hHHHHHH-HHHHHHHHHHHhhhcccchhccCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC
Confidence            2222221 1112222222     110  01 3689999999999999999999999999999999998654211000000


Q ss_pred             hhh-hccccccccccc--cCC----------CCCHHHHHhcCCEEEEec--cCChhhhcccCHHHHhcCCCCcEEEEcC-
Q 017490          222 ALA-VKNGIIDDLVDE--KGC----------HEDIFEFASKADVVVCCL--SLNKQTAGIVNKSFLSSMKKGSLLVNIA-  285 (370)
Q Consensus       222 ~~~-~~~~~~~~~~~~--~~~----------~~~l~ell~~aDiV~l~l--P~t~~t~~li~~~~l~~mk~gailIN~s-  285 (370)
                      .+. +......+....  +..          ...++++++.+|+|+.|+  |.. .+.++++++.++.||+|+++||++ 
T Consensus       217 ~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~aDvVi~~~~~pg~-~~~~li~~~~l~~mk~g~vivdva~  295 (384)
T 1l7d_A          217 KFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVLKELVKTDIAITTALIPGK-PAPVLITEEMVTKMKPGSVIIDLAV  295 (384)
T ss_dssp             EECCC-----------------------CCHHHHHHHHHTTCSEEEECCCCTTS-CCCCCSCHHHHTTSCTTCEEEETTG
T ss_pred             eEEeecccccccccccccchhhcCHHHHhhhHHHHHHHhCCCCEEEECCccCCC-CCCeeeCHHHHhcCCCCCEEEEEec
Confidence            000 000000000000  000          011778889999999887  433 245788999999999999999999 


Q ss_pred             -CCccc
Q 017490          286 -RGGLL  290 (370)
Q Consensus       286 -Rg~~v  290 (370)
                       ||+.+
T Consensus       296 ~~gg~~  301 (384)
T 1l7d_A          296 EAGGNC  301 (384)
T ss_dssp             GGTCSS
T ss_pred             CCCCCe
Confidence             77643

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=99.66  E-value=1.5e-18  Score=172.90  Aligned_cols=213  Identities=16%  Similarity=0.268  Sum_probs=154.9

Q ss_pred             CCCeEEEEeCcccCccchhhHh-----cCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC----
Q 017490           99 NQMKLIMQFGVGLEGVDINAAT-----RCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV----  169 (370)
Q Consensus        99 ~~Lk~I~~~~~G~d~id~~~~~-----~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~----  169 (370)
                      +.+++|...++|+|++++.+..     ++++.+++.+|..    .+++++.+..++.+.|++...... ..+.|..    
T Consensus        80 ~a~~~i~~v~~Glds~~vGe~~Il~qvk~~~~~~~~~G~~----~~~~~~~~~~a~~~~k~v~~~~~~-~~~~~s~a~~a  154 (404)
T 1gpj_A           80 EAVRHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGTL----DEALKIVFRRAINLGKRAREETRI-SEGAVSIGSAA  154 (404)
T ss_dssp             HHHHHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTCC----CHHHHHHHHHHHHHHHHHHHHSST-TCSCCSHHHHH
T ss_pred             hHhhhheeeccCCCCCcCCcchhHHHHHHHHHHHHHcCCc----hHHHHHHHHHHhhhhccCcchhhh-cCCCccHHHHH
Confidence            4688999999999999999887     8899999998862    478999999999999988654322 1223321    


Q ss_pred             -CC-c---ccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCH
Q 017490          170 -PT-G---ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDI  243 (370)
Q Consensus       170 -~~-~---~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  243 (370)
                       .. .   .++.|++|+|+|+|.||+.+++.++.+|+ +|+++||+..+.....             ..+........++
T Consensus       155 v~~a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la-------------~~~g~~~~~~~~l  221 (404)
T 1gpj_A          155 VELAERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELA-------------RDLGGEAVRFDEL  221 (404)
T ss_dssp             HHHHHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHH-------------HHHTCEECCGGGH
T ss_pred             HHHHHHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH-------------HHcCCceecHHhH
Confidence             00 1   14789999999999999999999999999 9999999764310000             0000011123467


Q ss_pred             HHHHhcCCEEEEeccCChhhhcccCHHHHhc--CC----CCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCC
Q 017490          244 FEFASKADVVVCCLSLNKQTAGIVNKSFLSS--MK----KGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPF  317 (370)
Q Consensus       244 ~ell~~aDiV~l~lP~t~~t~~li~~~~l~~--mk----~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl  317 (370)
                      .+++..+|+|+.|+|.   +..+++++.++.  ||    ++.++||++                             +|.
T Consensus       222 ~~~l~~aDvVi~at~~---~~~~~~~~~l~~~~lk~r~~~~~v~vdia-----------------------------~P~  269 (404)
T 1gpj_A          222 VDHLARSDVVVSATAA---PHPVIHVDDVREALRKRDRRSPILIIDIA-----------------------------NPR  269 (404)
T ss_dssp             HHHHHTCSEEEECCSS---SSCCBCHHHHHHHHHHCSSCCCEEEEECC-----------------------------SSC
T ss_pred             HHHhcCCCEEEEccCC---CCceecHHHHHHHHHhccCCCCEEEEEcc-----------------------------CCC
Confidence            8888999999999764   456777777776  42    456666664                             366


Q ss_pred             CCCCcccCCCceEE--ccCCCCccHHHHH----------HHHHHHHHHHHHHHcCC
Q 017490          318 DPNDPILKFKNVLI--TPHVGGVTEHSYR----------SMAKVVGDVALQLHAGT  361 (370)
Q Consensus       318 ~~~~pL~~~~nvil--TPHia~~t~~~~~----------~~~~~~~~ni~~~~~g~  361 (370)
                      +.+.+++++|||++  +||+++.+.++.+          .+....++++..|..++
T Consensus       270 ~i~~~l~~l~~v~l~d~d~l~~~~~~~~~~r~~~~~~~~~li~q~~~~f~~w~~~~  325 (404)
T 1gpj_A          270 DVEEGVENIEDVEVRTIDDLRVIARENLERRRKEIPKVEKLIEEELSTVEEELEKL  325 (404)
T ss_dssp             SBCTTGGGSTTEEEEEHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCccccccCCeEEEeHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            56788999999999  9999998887654          55566666766666553

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=99.58  E-value=3.7e-15  Score=148.16  Aligned_cols=103  Identities=20%  Similarity=0.371  Sum_probs=85.4

Q ss_pred             cccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcC
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKA  250 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~a  250 (370)
                      +..+.|++|+|+|+|.||+.+|++|++||++|+++|+++.....                  ....+ ...++++++++|
T Consensus       215 ~~~L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~------------------A~~~G~~v~~Leeal~~A  276 (435)
T 3gvp_A          215 DMMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQ------------------ACMDGFRLVKLNEVIRQV  276 (435)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHH------------------HHHTTCEECCHHHHTTTC
T ss_pred             CceecCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHH------------------HHHcCCEeccHHHHHhcC
Confidence            46799999999999999999999999999999999987532100                  00111 245899999999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcc-cCHHHHH
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL-LDYEAIA  296 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~-vd~~aL~  296 (370)
                      |+|++|    +.|+++|+++.|+.||+|++|||+|||.. +|.++|.
T Consensus       277 DIVi~a----tgt~~lI~~e~l~~MK~gailINvgrg~~EId~~~L~  319 (435)
T 3gvp_A          277 DIVITC----TGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVASLR  319 (435)
T ss_dssp             SEEEEC----SSCSCSBCHHHHHHSCTTEEEEECSSTTTTBTGGGGC
T ss_pred             CEEEEC----CCCcccCCHHHHHhcCCCcEEEEecCCCccCCHHHHH
Confidence            999995    56788999999999999999999999998 7776663

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=99.39  E-value=5.1e-13  Score=127.65  Aligned_cols=115  Identities=15%  Similarity=0.209  Sum_probs=93.0

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEEEe
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCC  256 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~  256 (370)
                      ++||+||+|.||..+|++|...|++|++|||++.+..                 .+..... ...++.++++.||+|++|
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~-----------------~l~~~G~~~~~s~~e~~~~~dvvi~~   68 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAE-----------------PLTKLGATVVENAIDAITPGGIVFSV   68 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------C-----------------TTTTTTCEECSSGGGGCCTTCEEEEC
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHH-----------------HHHHcCCeEeCCHHHHHhcCCceeee
Confidence            4799999999999999999999999999999876521                 1111111 346889999999999999


Q ss_pred             ccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEec
Q 017490          257 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV  311 (370)
Q Consensus       257 lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV  311 (370)
                      +|..+.++.++....+..+++|.++||++...+-+.+.+.+.+.+..+.  .+|.
T Consensus        69 l~~~~~~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~--~lda  121 (297)
T 4gbj_A           69 LADDAAVEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYGAH--YVGA  121 (297)
T ss_dssp             CSSHHHHHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEC
T ss_pred             ccchhhHHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcCCc--eecC
Confidence            9988888888888899999999999999999999999999999998887  5665

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=99.39  E-value=2.8e-13  Score=129.71  Aligned_cols=115  Identities=19%  Similarity=0.258  Sum_probs=95.9

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEEEe
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCC  256 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~  256 (370)
                      ++||+||+|.||..+|++|...|++|.+|||++.+.                 ..+..... ...++.|+.+.||+|++|
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~-----------------~~l~~~Ga~~a~s~~e~~~~~dvv~~~   66 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAV-----------------DGLVAAGASAARSARDAVQGADVVISM   66 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHH-----------------HHHHHTTCEECSSHHHHHTTCSEEEEC
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHH-----------------HHHHHcCCEEcCCHHHHHhcCCceeec
Confidence            589999999999999999999999999999986542                 11221111 346899999999999999


Q ss_pred             ccCChhhhcccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEec
Q 017490          257 LSLNKQTAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV  311 (370)
Q Consensus       257 lP~t~~t~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV  311 (370)
                      +|..+.++.++.  ...++.+++|.++||+|...+-+...+.+.+++..+.  .+|.
T Consensus        67 l~~~~~v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~--~lDa  121 (300)
T 3obb_A           67 LPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLA--MLDA  121 (300)
T ss_dssp             CSCHHHHHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCE--EEEC
T ss_pred             CCchHHHHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCE--EEec
Confidence            999998888763  3478889999999999999999999999999998886  6775

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=99.35  E-value=1.1e-12  Score=125.50  Aligned_cols=120  Identities=15%  Similarity=0.109  Sum_probs=95.8

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCC
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKAD  251 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aD  251 (370)
                      .++..++|||||+|.||+.+|+.|...|++|++|||++.+..                 .+..... ...++++++++||
T Consensus         5 ~~~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~-----------------~~~~~g~~~~~~~~e~~~~aD   67 (306)
T 3l6d_A            5 DESFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAA-----------------ALVAAGAHLCESVKAALSASP   67 (306)
T ss_dssp             CCCCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHH-----------------HHHHHTCEECSSHHHHHHHSS
T ss_pred             cccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-----------------HHHHCCCeecCCHHHHHhcCC
Confidence            345678999999999999999999999999999999865421                 1111111 2468999999999


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEec
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV  311 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV  311 (370)
                      +|++|+|....++.++..+.+..+++|.++||++++.+.+.+.+.+.+++..+.  .+|.
T Consensus        68 vVi~~vp~~~~~~~v~~~~~l~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~--~vda  125 (306)
T 3l6d_A           68 ATIFVLLDNHATHEVLGMPGVARALAHRTIVDYTTNAQDEGLALQGLVNQAGGH--YVKG  125 (306)
T ss_dssp             EEEECCSSHHHHHHHHTSTTHHHHTTTCEEEECCCCCTTHHHHHHHHHHHTTCE--EEEE
T ss_pred             EEEEEeCCHHHHHHHhcccchhhccCCCEEEECCCCCHHHHHHHHHHHHHcCCe--EEec
Confidence            999999987778887753345667899999999999999999999999987765  4554

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=99.34  E-value=1.1e-12  Score=125.63  Aligned_cols=122  Identities=17%  Similarity=0.129  Sum_probs=93.3

Q ss_pred             ccCCCCcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCH
Q 017490          166 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDI  243 (370)
Q Consensus       166 ~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l  243 (370)
                      +|.....+...-++|||||+|.||..+|+.|...|++|.+|||++.+..                 .+ .+.+  ...++
T Consensus        10 ~~~~~~~~~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~-----------------~l-~~~g~~~~~~~   71 (310)
T 3doj_A           10 HSSGLVPRGSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCD-----------------EL-VEHGASVCESP   71 (310)
T ss_dssp             --------CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGH-----------------HH-HHTTCEECSSH
T ss_pred             cccccCcccccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHH-----------------HH-HHCCCeEcCCH
Confidence            3444444556678999999999999999999999999999999865421                 11 1112  24689


Q ss_pred             HHHHhcCCEEEEeccCChhhhccc--CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          244 FEFASKADVVVCCLSLNKQTAGIV--NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       244 ~ell~~aDiV~l~lP~t~~t~~li--~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      ++++++||+|++|+|....++.++  ..+.++.+++|.++||+++..+...+.+.+.+.+..+.
T Consensus        72 ~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~  135 (310)
T 3doj_A           72 AEVIKKCKYTIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGR  135 (310)
T ss_dssp             HHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             HHHHHhCCEEEEEcCCHHHHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            999999999999999877777766  24567789999999999999999999999999887665

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=99.29  E-value=1.1e-11  Score=116.64  Aligned_cols=145  Identities=21%  Similarity=0.186  Sum_probs=101.6

Q ss_pred             ceEEEEecCchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHHh-cC
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFAS-KA  250 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~-~a  250 (370)
                      ++|||||+|.||..+|+.|+..|+  +|++||++.....                  ...+.+    ...++++.++ +|
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~------------------~~~~~g~~~~~~~~~~~~~~~~a   63 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESIS------------------KAVDLGIIDEGTTSIAKVEDFSP   63 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHH------------------HHHHTTSCSEEESCGGGGGGTCC
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHH------------------HHHHCCCcccccCCHHHHhcCCC
Confidence            479999999999999999999998  9999998754311                  011111    1246778888 99


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCC---CCCCCCcccCCC
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE---PFDPNDPILKFK  327 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~E---Pl~~~~pL~~~~  327 (370)
                      |+|++|+|.. .+..++. +..+.+++++++++++++.....+.+.+.+.++-+.  +--++..|   |....++++...
T Consensus        64 DvVilavp~~-~~~~v~~-~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~~~v~--~~p~~~~~~~gp~~a~~~l~~g~  139 (281)
T 2g5c_A           64 DFVMLSSPVR-TFREIAK-KLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVG--GHPIAGTEKSGVEYSLDNLYEGK  139 (281)
T ss_dssp             SEEEECSCHH-HHHHHHH-HHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEEC--EEEECCCSCCSGGGCCSSTTTTC
T ss_pred             CEEEEcCCHH-HHHHHHH-HHHhhCCCCcEEEECCCCcHHHHHHHHHhcccccee--eccccCCccCChhhhhhHHhCCC
Confidence            9999999954 5555553 455678999999999998876677788888764111  12234333   333345677888


Q ss_pred             ceEEccCCCCccHHHHHH
Q 017490          328 NVLITPHVGGVTEHSYRS  345 (370)
Q Consensus       328 nvilTPHia~~t~~~~~~  345 (370)
                      +++++||.++. .+..+.
T Consensus       140 ~~~~~~~~~~~-~~~~~~  156 (281)
T 2g5c_A          140 KVILTPTKKTD-KKRLKL  156 (281)
T ss_dssp             EEEECCCSSSC-HHHHHH
T ss_pred             CEEEecCCCCC-HHHHHH
Confidence            89999997653 444433

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=99.29  E-value=1.1e-11  Score=119.26  Aligned_cols=151  Identities=21%  Similarity=0.183  Sum_probs=102.3

Q ss_pred             cccCceEEEEecCchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHH-H
Q 017490          174 TLLGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFE-F  246 (370)
Q Consensus       174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~e-l  246 (370)
                      ++.-++|||||+|.||..+|+.++..|+  +|++||++......                  ..+.+    ...++++ +
T Consensus        30 ~~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~------------------a~~~G~~~~~~~~~~~~~   91 (314)
T 3ggo_A           30 SLSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISK------------------AVDLGIIDEGTTSIAKVE   91 (314)
T ss_dssp             CCSCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHH------------------HHHTTSCSEEESCTTGGG
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHH------------------HHHCCCcchhcCCHHHHh
Confidence            3445899999999999999999999999  99999997643110                  11111    1246778 8


Q ss_pred             HhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCC---CCCCCCcc
Q 017490          247 ASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE---PFDPNDPI  323 (370)
Q Consensus       247 l~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~E---Pl~~~~pL  323 (370)
                      +++||+|++|+|.. .+..++ ++....+++++++++++.......+++.+.+.. ++.+ +-=++..|   |......|
T Consensus        92 ~~~aDvVilavp~~-~~~~vl-~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~-~~v~-~hPm~G~e~sG~~~A~~~L  167 (314)
T 3ggo_A           92 DFSPDFVMLSSPVR-TFREIA-KKLSYILSEDATVTDQGSVKGKLVYDLENILGK-RFVG-GHPIAGTEKSGVEYSLDNL  167 (314)
T ss_dssp             GGCCSEEEECSCGG-GHHHHH-HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG-GEEC-EEECCCCCCCSGGGCCTTT
T ss_pred             hccCCEEEEeCCHH-HHHHHH-HHHhhccCCCcEEEECCCCcHHHHHHHHHhcCC-CEEe-cCcccCCcccchhhhhhhh
Confidence            99999999999965 344454 456677999999999988765556666666654 2221 11233332   22234467


Q ss_pred             cCCCceEEccCCCCccHHHHHHHH
Q 017490          324 LKFKNVLITPHVGGVTEHSYRSMA  347 (370)
Q Consensus       324 ~~~~nvilTPHia~~t~~~~~~~~  347 (370)
                      +.-..+++||+- +.+++..+++.
T Consensus       168 f~g~~~il~~~~-~~~~~~~~~v~  190 (314)
T 3ggo_A          168 YEGKKVILTPTK-KTDKKRLKLVK  190 (314)
T ss_dssp             TTTCEEEECCCT-TSCHHHHHHHH
T ss_pred             hcCCEEEEEeCC-CCCHHHHHHHH
Confidence            788889999983 34555554443

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=99.29  E-value=4.1e-12  Score=120.94  Aligned_cols=109  Identities=15%  Similarity=0.204  Sum_probs=90.3

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEEEe
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCC  256 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~  256 (370)
                      ++|||||+|.||+.+|+.|...|++|.+|||++.+..                 .+..... ...+++++++ ||+|++|
T Consensus        16 ~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~-----------------~~~~~g~~~~~~~~~~~~-aDvvi~~   77 (296)
T 3qha_A           16 LKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMT-----------------PLAEAGATLADSVADVAA-ADLIHIT   77 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSH-----------------HHHHTTCEECSSHHHHTT-SSEEEEC
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHH-----------------HHHHCCCEEcCCHHHHHh-CCEEEEE
Confidence            5899999999999999999999999999999876521                 1111111 2468999999 9999999


Q ss_pred             ccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          257 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       257 lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      +|....++.++ .+.++.+++|.++||+++..+.+.+.+.+.+.+..+.
T Consensus        78 vp~~~~~~~v~-~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~  125 (296)
T 3qha_A           78 VLDDAQVREVV-GELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIH  125 (296)
T ss_dssp             CSSHHHHHHHH-HHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCE
T ss_pred             CCChHHHHHHH-HHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCE
Confidence            99877777777 6778889999999999999999999999999887665

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=99.28  E-value=1.3e-11  Score=120.37  Aligned_cols=107  Identities=20%  Similarity=0.280  Sum_probs=87.0

Q ss_pred             cccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHh-cCC
Q 017490          174 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFAS-KAD  251 (370)
Q Consensus       174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~-~aD  251 (370)
                      ++.||||+|+|+|+||+.+|++|+++|++|+++|++....                  +.....+ ...+.++++. +||
T Consensus       172 ~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~~------------------~~a~~~ga~~v~~~ell~~~~D  233 (355)
T 1c1d_A          172 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERV------------------AHAVALGHTAVALEDVLSTPCD  233 (355)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHH------------------HHHHHTTCEECCGGGGGGCCCS
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccHH------------------HHHHhcCCEEeChHHhhcCccc
Confidence            7999999999999999999999999999999999764320                  0111111 2346678887 999


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      +++.|     ++.++|+.+.++.|| ..+++|.+|+++.++++ .++|+++.+.
T Consensus       234 IliP~-----A~~~~I~~~~~~~lk-~~iVie~AN~p~t~~eA-~~~L~~~gIl  280 (355)
T 1c1d_A          234 VFAPC-----AMGGVITTEVARTLD-CSVVAGAANNVIADEAA-SDILHARGIL  280 (355)
T ss_dssp             EEEEC-----SCSCCBCHHHHHHCC-CSEECCSCTTCBCSHHH-HHHHHHTTCE
T ss_pred             eecHh-----HHHhhcCHHHHhhCC-CCEEEECCCCCCCCHHH-HHHHHhCCEE
Confidence            99743     588899999999998 78999999999999788 6999999886

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=99.27  E-value=3e-12  Score=123.33  Aligned_cols=116  Identities=23%  Similarity=0.265  Sum_probs=93.4

Q ss_pred             cccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCE
Q 017490          174 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADV  252 (370)
Q Consensus       174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDi  252 (370)
                      ....++|||||+|.||+.+|+.|...|++|.+|||++.+..                 .+..... ...++++++++||+
T Consensus        28 ~~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~-----------------~l~~~g~~~~~~~~e~~~~aDv   90 (320)
T 4dll_A           28 DPYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAA-----------------SLAALGATIHEQARAAARDADI   90 (320)
T ss_dssp             -CCCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHH-----------------HHHTTTCEEESSHHHHHTTCSE
T ss_pred             ccCCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHH-----------------HHHHCCCEeeCCHHHHHhcCCE
Confidence            34567999999999999999999999999999999865411                 1111111 23689999999999


Q ss_pred             EEEeccCChhhhcccCH-HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceE
Q 017490          253 VVCCLSLNKQTAGIVNK-SFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGG  306 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~-~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~g  306 (370)
                      |++|+|....++.++.. +.++.+++|.++||++++.+.+.+.+.+.+.+..+..
T Consensus        91 Vi~~vp~~~~~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~  145 (320)
T 4dll_A           91 VVSMLENGAVVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAH  145 (320)
T ss_dssp             EEECCSSHHHHHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEE
T ss_pred             EEEECCCHHHHHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEE
Confidence            99999987777776643 5677899999999999999999999999999877663

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=99.27  E-value=8e-12  Score=122.41  Aligned_cols=121  Identities=14%  Similarity=0.183  Sum_probs=96.6

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcC---
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKA---  250 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~a---  250 (370)
                      +.+++|||||+|.||..+|+.|...|++|.+|||++.+..                 .+..... ...+++++++.+   
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~-----------------~l~~~g~~~~~s~~e~~~~a~~~   82 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQ-----------------ALEREGIAGARSIEEFCAKLVKP   82 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHH-----------------HHHTTTCBCCSSHHHHHHHSCSS
T ss_pred             hcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHH-----------------HHHHCCCEEeCCHHHHHhcCCCC
Confidence            4578999999999999999999999999999999865411                 1111111 346899999999   


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCC
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWT  314 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~  314 (370)
                      |+|++|+|.. .++.++ .+.+..+++|.++||++++...+...+.+.+.+..+......|+..
T Consensus        83 DvVi~~vp~~-~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg  144 (358)
T 4e21_A           83 RVVWLMVPAA-VVDSML-QRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGG  144 (358)
T ss_dssp             CEEEECSCGG-GHHHHH-HHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECG
T ss_pred             CEEEEeCCHH-HHHHHH-HHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCC
Confidence            9999999977 777777 4677889999999999999999999999999998887555555443

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=99.26  E-value=6.3e-12  Score=118.86  Aligned_cols=111  Identities=15%  Similarity=0.144  Sum_probs=90.6

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEEEe
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCC  256 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~  256 (370)
                      ++|||||+|.||+.+|+.|...|++|.+|||++.+..                 .+..... ...++++++++||+|++|
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~-----------------~~~~~g~~~~~~~~~~~~~aDvvi~~   64 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAE-----------------ELAALGAERAATPCEVVESCPVTFAM   64 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGH-----------------HHHHTTCEECSSHHHHHHHCSEEEEC
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHH-----------------HHHHCCCeecCCHHHHHhcCCEEEEE
Confidence            6899999999999999999999999999999865421                 1111111 346899999999999999


Q ss_pred             ccCChhhhccc--CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          257 LSLNKQTAGIV--NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       257 lP~t~~t~~li--~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      +|....++.++  +.+.++.+++|.++||+++..+.+.+.+.+.+.+..+.
T Consensus        65 vp~~~~~~~v~~~~~~l~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~  115 (287)
T 3pef_A           65 LADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGR  115 (287)
T ss_dssp             CSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             cCCHHHHHHHHcCcchHhhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCE
Confidence            99777777766  24567789999999999999999999999999887665

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=99.24  E-value=5.8e-12  Score=119.11  Aligned_cols=111  Identities=17%  Similarity=0.150  Sum_probs=89.8

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEEEe
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCC  256 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~  256 (370)
                      ++|||||+|.||..+|+.|...|++|.+|||++.+..                 .+..... ...++++++++||+|++|
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~-----------------~~~~~g~~~~~~~~~~~~~advvi~~   64 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCA-----------------PLVALGARQASSPAEVCAACDITIAM   64 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGH-----------------HHHHHTCEECSCHHHHHHHCSEEEEC
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHH-----------------HHHHCCCeecCCHHHHHHcCCEEEEE
Confidence            4799999999999999999999999999999865421                 1111111 236899999999999999


Q ss_pred             ccCChhhhccc--CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          257 LSLNKQTAGIV--NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       257 lP~t~~t~~li--~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      +|....++.++  ..+.++.+++|.++||++++...+.+.+.+.+.+..+.
T Consensus        65 v~~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~  115 (287)
T 3pdu_A           65 LADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGR  115 (287)
T ss_dssp             CSSHHHHHHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             cCCHHHHHHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            99776777766  24567789999999999999999999999999887665

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=99.23  E-value=1.8e-11  Score=117.53  Aligned_cols=121  Identities=17%  Similarity=0.181  Sum_probs=90.5

Q ss_pred             cccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCC--ccccccccccchhhhccccccccccccC--CCCCHHHHHh
Q 017490          174 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW--ASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS  248 (370)
Q Consensus       174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~  248 (370)
                      ....++|||||+|.||..+|+.|...|+ +|++|||++  ...                  +...+.+  ...+++++++
T Consensus        21 ~~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~------------------~~~~~~g~~~~~~~~e~~~   82 (312)
T 3qsg_A           21 QSNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWR------------------PRAEELGVSCKASVAEVAG   82 (312)
T ss_dssp             ----CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHH------------------HHHHHTTCEECSCHHHHHH
T ss_pred             cCCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHH------------------HHHHHCCCEEeCCHHHHHh
Confidence            3446799999999999999999999999 999999963  221                  1111112  2368899999


Q ss_pred             cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC--CceEEEEe--cCCCCC
Q 017490          249 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG--HLGGLGID--VAWTEP  316 (370)
Q Consensus       249 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g--~i~ga~lD--V~~~EP  316 (370)
                      +||+|++|+|.....+- + .+..+.+++|.++||+++.......++.+.+.+.  .+.  .+|  |+..+|
T Consensus        83 ~aDvVi~~vp~~~~~~~-~-~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~--~vd~pv~g~~~  150 (312)
T 3qsg_A           83 ECDVIFSLVTAQAALEV-A-QQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQ--YAAVAVMSAVK  150 (312)
T ss_dssp             HCSEEEECSCTTTHHHH-H-HHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCE--EEEEEECSCST
T ss_pred             cCCEEEEecCchhHHHH-H-HhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCe--EEeccccCCch
Confidence            99999999997765543 3 5677889999999999999999999999999876  444  455  455433

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=99.20  E-value=2.3e-11  Score=117.07  Aligned_cols=125  Identities=16%  Similarity=0.107  Sum_probs=91.2

Q ss_pred             ceEEEEecCchhHHHHHHhccCC-CEEEEEcCCCccccccccccchhhhccccccccccccCCCC-CHHHHHhcCCEEEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHE-DIFEFASKADVVVC  255 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~ell~~aDiV~l  255 (370)
                      ++|||||+|.||..+|+.|...| ++|++||+++.........           .+...+.+... ++++++++||+|++
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~-----------~~~~~~~g~~~~s~~e~~~~aDvVi~   93 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGAL-----------RARAAELGVEPLDDVAGIACADVVLS   93 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHH-----------HHHHHHTTCEEESSGGGGGGCSEEEE
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHH-----------HHHHHHCCCCCCCHHHHHhcCCEEEE
Confidence            57999999999999999999999 9999999975310000000           00000111134 67889999999999


Q ss_pred             eccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCC
Q 017490          256 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE  315 (370)
Q Consensus       256 ~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~E  315 (370)
                      |+|.....+.+  .+..+.+++|.++||+++..+...+.+.+.+.+..+....--|+.++
T Consensus        94 avp~~~~~~~~--~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~~  151 (317)
T 4ezb_A           94 LVVGAATKAVA--ASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMARV  151 (317)
T ss_dssp             CCCGGGHHHHH--HHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSCS
T ss_pred             ecCCHHHHHHH--HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCCc
Confidence            99977665544  56778899999999999999999999999998876653222345533

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=99.20  E-value=6.8e-11  Score=111.77  Aligned_cols=157  Identities=13%  Similarity=0.119  Sum_probs=101.0

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccc-cchhh--hcc--c----cccccccccCCCCCHHHHHh
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSALA--VKN--G----IIDDLVDEKGCHEDIFEFAS  248 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~-~~~~~--~~~--~----~~~~~~~~~~~~~~l~ell~  248 (370)
                      ++|||||+|.||..+|+.++..|++|++||++.......... ...+.  ...  +    .............++++.++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~   84 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAVK   84 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHhc
Confidence            689999999999999999999999999999986542110000 00000  000  0    00000000112367888999


Q ss_pred             cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCc
Q 017490          249 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKN  328 (370)
Q Consensus       249 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~n  328 (370)
                      +||+|+.++|.+.+....+-++..+.+++++++++.+.+  +...++.+++... -..+++..|.        |.+..+.
T Consensus        85 ~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~--~~~~~la~~~~~~-~~~ig~h~~~--------p~~~~~l  153 (283)
T 4e12_A           85 DADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSST--LLPSDLVGYTGRG-DKFLALHFAN--------HVWVNNT  153 (283)
T ss_dssp             TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHHHHSCG-GGEEEEEECS--------STTTSCE
T ss_pred             cCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCCC-cceEEEccCC--------CcccCce
Confidence            999999999988766665556777789999999955444  3567787777543 3445666553        4566788


Q ss_pred             eEEccCCCCccHHHHHHH
Q 017490          329 VLITPHVGGVTEHSYRSM  346 (370)
Q Consensus       329 vilTPHia~~t~~~~~~~  346 (370)
                      +.++||- ..+++..+++
T Consensus       154 vevv~~~-~t~~~~~~~~  170 (283)
T 4e12_A          154 AEVMGTT-KTDPEVYQQV  170 (283)
T ss_dssp             EEEEECT-TSCHHHHHHH
T ss_pred             EEEEeCC-CCCHHHHHHH
Confidence            8999983 3344444433

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=99.19  E-value=2.4e-10  Score=113.18  Aligned_cols=206  Identities=21%  Similarity=0.224  Sum_probs=113.2

Q ss_pred             cCcceEEEEeCCCCCHHHHhcC-CCCeEEEEeCcccCccchhhHhcCCeEEe---ccCCCCCCCchhHHHHHHHHHHHHH
Q 017490           77 IANYHLCVVKTMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVA---RIPGDVTGNAASCAELTIYLMLGLL  152 (370)
Q Consensus        77 ~~~~d~~i~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~V~---n~pg~~~~na~~vAE~~l~~~L~~~  152 (370)
                      +.++|+++....+.. +-++.+ ++--++...-..-|.=-++.+.++||...   ..|...  .+.++-  ++..|-.+.
T Consensus        88 ~~~adiIlkVk~p~~-~e~~~l~~g~~l~~~lh~~~~~~l~~~l~~~~it~ia~E~i~r~~--ra~~l~--~ls~~s~iA  162 (405)
T 4dio_A           88 AKTADVILKVRRPSA-QEISGYRSGAVVIAIMDPYGNEEAISAMAGAGLTTFAMELMPRIT--RAQSMD--VLSSQANLA  162 (405)
T ss_dssp             GGGCSEEEEEECCCT-TTGGGSCTTCEEEEECCCTTCHHHHHHHHHTTCEEEEGGGSCCSG--GGGGGC--HHHHHHHHH
T ss_pred             hccCCEEEEeCCCCh-hHHhhcCCCcEEEEEeccccCHHHHHHHHHCCCeEEEeecccccc--ccCccc--eecchhHHH
Confidence            446788776444433 445555 45556655544334444567888998874   222210  011110  111111111


Q ss_pred             HhHHHHHHHHHhcc-cCCC--CcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccc
Q 017490          153 RKQNEMRMAIEQKK-LGVP--TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGI  229 (370)
Q Consensus       153 R~~~~~~~~~~~~~-~~~~--~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~  229 (370)
                      -+..-......-++ ++..  .-..+.+.+|+|+|+|.||..+|+.++++|++|+++|+++.........  ...+..-.
T Consensus       163 Gy~Av~~aa~~l~~~~~~l~t~~g~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~--G~~~~~~~  240 (405)
T 4dio_A          163 GYQAVIDAAYEYDRALPMMMTAAGTVPAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASL--GAKFIAVE  240 (405)
T ss_dssp             HHHHHHHHHHHCSSCSSCEEETTEEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHT--TCEECCCC
T ss_pred             HHHHHHHHHHHhHhhhchhhccCCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHc--CCceeecc
Confidence            11100000100011 1111  0124788999999999999999999999999999999987542110000  00000000


Q ss_pred             ccc--cccccCC-------------CCCHHHHHhcCCEEEEec--cCChhhhcccCHHHHhcCCCCcEEEEcC--CCccc
Q 017490          230 IDD--LVDEKGC-------------HEDIFEFASKADVVVCCL--SLNKQTAGIVNKSFLSSMKKGSLLVNIA--RGGLL  290 (370)
Q Consensus       230 ~~~--~~~~~~~-------------~~~l~ell~~aDiV~l~l--P~t~~t~~li~~~~l~~mk~gailIN~s--Rg~~v  290 (370)
                      ..+  -....+.             ..++++.++++|+|+.++  |.. ....+++++.++.||||+++||+|  +|+.+
T Consensus       241 ~~~~~d~~~~~~ya~e~s~~~~~~~~~~l~e~l~~aDVVI~tvlipg~-~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~  319 (405)
T 4dio_A          241 DEEFKAAETAGGYAKEMSGEYQVKQAALVAEHIAKQDIVITTALIPGR-PAPRLVTREMLDSMKPGSVVVDLAVERGGNI  319 (405)
T ss_dssp             C-----------------CHHHHHHHHHHHHHHHTCSEEEECCCCSSS-CCCCCBCHHHHTTSCTTCEEEETTGGGTCSB
T ss_pred             cccccccccccchhhhcchhhhhhhHhHHHHHhcCCCEEEECCcCCCC-CCCEEecHHHHhcCCCCCEEEEEeCCCCCCc
Confidence            000  0000000             126788999999999885  432 456789999999999999999998  66654

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=99.19  E-value=6.7e-12  Score=119.76  Aligned_cols=111  Identities=22%  Similarity=0.201  Sum_probs=89.2

Q ss_pred             CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--C-CCCHHHHHhcCCEE
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--C-HEDIFEFASKADVV  253 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~l~ell~~aDiV  253 (370)
                      .++|||||+|.||..+|+.|...|++|.+|||++.+..                 .+ .+.+  . ..++++++++||+|
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~-----------------~~-~~~g~~~~~~~~~e~~~~aDvv   68 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACA-----------------NL-LAEGACGAAASAREFAGVVDAL   68 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHH-----------------HH-HHTTCSEEESSSTTTTTTCSEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHH-----------------HH-HHcCCccccCCHHHHHhcCCEE
Confidence            46899999999999999999999999999999865411                 01 1111  1 35778889999999


Q ss_pred             EEeccCChhhhcccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          254 VCCLSLNKQTAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       254 ~l~lP~t~~t~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      ++|+|....++.++.  ++.++.+++|.++||+++......+.+.+.+.+..+.
T Consensus        69 i~~vp~~~~~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~  122 (303)
T 3g0o_A           69 VILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLN  122 (303)
T ss_dssp             EECCSSHHHHHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCE
T ss_pred             EEECCCHHHHHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCe
Confidence            999998777777652  4566789999999999999998899999999886665

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=99.18  E-value=2.9e-11  Score=115.27  Aligned_cols=136  Identities=16%  Similarity=0.125  Sum_probs=89.8

Q ss_pred             HHHHHHhcccCCCCcccccCceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccc
Q 017490          158 MRMAIEQKKLGVPTGETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE  236 (370)
Q Consensus       158 ~~~~~~~~~~~~~~~~~l~g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (370)
                      +..+++++.|.....   ..++||||| +|.||..+|+.|+..|++|.++|++...                        
T Consensus         5 ~~~~~~~~~~~~~~~---~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~------------------------   57 (298)
T 2pv7_A            5 SYANENQFGFKTINS---DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA------------------------   57 (298)
T ss_dssp             --------CCCCSCT---TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG------------------------
T ss_pred             HHhhhhccCccccCC---CCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCccc------------------------
Confidence            344555667854321   356899999 9999999999999999999999976321                        


Q ss_pred             cCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCC
Q 017490          237 KGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEP  316 (370)
Q Consensus       237 ~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP  316 (370)
                           +..+.+++||+|++|+|.. .+..++. +....++++++++++++......+++.+.+   ..     ++....|
T Consensus        58 -----~~~~~~~~aDvVilavp~~-~~~~vl~-~l~~~l~~~~iv~~~~svk~~~~~~~~~~~---~~-----~~v~~hP  122 (298)
T 2pv7_A           58 -----VAESILANADVVIVSVPIN-LTLETIE-RLKPYLTENMLLADLTSVKREPLAKMLEVH---TG-----AVLGLHP  122 (298)
T ss_dssp             -----GHHHHHTTCSEEEECSCGG-GHHHHHH-HHGGGCCTTSEEEECCSCCHHHHHHHHHHC---SS-----EEEEEEE
T ss_pred             -----CHHHHhcCCCEEEEeCCHH-HHHHHHH-HHHhhcCCCcEEEECCCCCcHHHHHHHHhc---CC-----CEEeeCC
Confidence                 4567788999999999965 4666663 455679999999999877654444444432   12     2222233


Q ss_pred             C-CCCCcccCCCceEEccCC
Q 017490          317 F-DPNDPILKFKNVLITPHV  335 (370)
Q Consensus       317 l-~~~~pL~~~~nvilTPHi  335 (370)
                      . .+..+++.-.++++|||-
T Consensus       123 ~~g~~~~~~~g~~~~l~~~~  142 (298)
T 2pv7_A          123 MFGADIASMAKQVVVRCDGR  142 (298)
T ss_dssp             CSCTTCSCCTTCEEEEEEEE
T ss_pred             CCCCCchhhcCCeEEEecCC
Confidence            2 123346666689999974

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=99.15  E-value=4.2e-11  Score=113.09  Aligned_cols=140  Identities=21%  Similarity=0.273  Sum_probs=96.3

Q ss_pred             CceEEEEecCchhHHHHHHhccC--CCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHHhcC
Q 017490          177 GKTVFILGFGNIGVELAKRLRPF--GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKA  250 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~--G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~a  250 (370)
                      -++|||||+|.||+.+|+.+...  |++|++||+++.....                  ..+.+    ...+++++++++
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~------------------~~~~g~~~~~~~~~~~~~~~a   67 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDI------------------ALERGIVDEATADFKVFAALA   67 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHH------------------HHHTTSCSEEESCTTTTGGGC
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHH------------------HHHcCCcccccCCHHHhhcCC
Confidence            36899999999999999999865  7899999987543110                  00111    124667778999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEe---cCCC---CCCCCCCcc
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSS-MKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGID---VAWT---EPFDPNDPI  323 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~-mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lD---V~~~---EPl~~~~pL  323 (370)
                      |+|++++|.. ..+.++. +.... +++++++++++++.....+.+.+.+.+..+.  .++   ++..   .|......+
T Consensus        68 DvVilavp~~-~~~~v~~-~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~--~v~~~P~~g~~~~g~~~a~~~l  143 (290)
T 3b1f_A           68 DVIILAVPIK-KTIDFIK-ILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQ--FVGSHPMAGSHKSGAVAANVNL  143 (290)
T ss_dssp             SEEEECSCHH-HHHHHHH-HHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCE--EEEEEEC-----CCTTSCCTTT
T ss_pred             CEEEEcCCHH-HHHHHHH-HHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCE--EEEeCCcCCCCcchHHHhhHHH
Confidence            9999999954 3355553 45566 8999999999988776667888877752333  233   2221   343344567


Q ss_pred             cCCCceEEccCCCCc
Q 017490          324 LKFKNVLITPHVGGV  338 (370)
Q Consensus       324 ~~~~nvilTPHia~~  338 (370)
                      +.-++++++||.++.
T Consensus       144 ~~g~~~~~~~~~~~~  158 (290)
T 3b1f_A          144 FENAYYIFSPSCLTK  158 (290)
T ss_dssp             TTTSEEEEEECTTCC
T ss_pred             hCCCeEEEecCCCCC
Confidence            777889999987653

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=99.14  E-value=3e-11  Score=113.02  Aligned_cols=180  Identities=17%  Similarity=0.142  Sum_probs=122.5

Q ss_pred             CCCCChhhhcCcc----eEEEEeCCCCCHHHHhcCCCCeEEEEeCcccCccchhhHhcCCeEEeccCCCCCCCchhHHHH
Q 017490           68 VPISDVPDVIANY----HLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAEL  143 (370)
Q Consensus        68 ~~~~~~~~~~~~~----d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~  143 (370)
                      .+++++.+.+.+.    ..+ ..+.|+.++++..++.|.-++....|++.++.    +.|-    .+|+   |...    
T Consensus        38 ~~~~~l~~~i~~l~~~~~G~-~vt~P~k~~i~~~~~~l~~~a~~~gavn~i~~----~~g~----~~g~---ntd~----  101 (263)
T 2d5c_A           38 TPLEALPGRLKEVRRAFRGV-NLTLPLKEAALAHLDWVSPEAQRIGAVNTVLQ----VEGR----LFGF---NTDA----  101 (263)
T ss_dssp             CCGGGHHHHHHHHHHHCSEE-EECTTCTTGGGGGCSEECHHHHHHTCCCEEEE----ETTE----EEEE---CCHH----
T ss_pred             CCHHHHHHHHHhccccCceE-EEcccCHHHHHHHHHHHhHHHHHhCCCCcEEc----cCCe----EEEe---CCCH----
Confidence            4556666655442    222 23578999999999999999999999999975    3442    2233   3322    


Q ss_pred             HHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchh
Q 017490          144 TIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSAL  223 (370)
Q Consensus       144 ~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~  223 (370)
                       .+++.++.|                 .+.+++| +++|||+|.||+++|+.|...|++|.++||+..+..         
T Consensus       102 -~g~~~~l~~-----------------~~~~l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~---------  153 (263)
T 2d5c_A          102 -PGFLEALKA-----------------GGIPLKG-PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRAL---------  153 (263)
T ss_dssp             -HHHHHHHHH-----------------TTCCCCS-CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHH---------
T ss_pred             -HHHHHHHHH-----------------hCCCCCC-eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHH---------
Confidence             244444332                 1346889 999999999999999999999999999999754311         


Q ss_pred             hhccccccccccccC-CCCCHHHHHhcCCEEEEeccCC--hhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 017490          224 AVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLN--KQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE  300 (370)
Q Consensus       224 ~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~lP~t--~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~  300 (370)
                              .+....+ ...+++++ +++|+|++|+|..  +.+...+.   .+.+++|.++++++.+.. +. .|.++++
T Consensus       154 --------~l~~~~~~~~~~~~~~-~~~Divi~~tp~~~~~~~~~~l~---~~~l~~g~~viD~~~~p~-~t-~l~~~a~  219 (263)
T 2d5c_A          154 --------ALAEEFGLRAVPLEKA-REARLLVNATRVGLEDPSASPLP---AELFPEEGAAVDLVYRPL-WT-RFLREAK  219 (263)
T ss_dssp             --------HHHHHHTCEECCGGGG-GGCSEEEECSSTTTTCTTCCSSC---GGGSCSSSEEEESCCSSS-SC-HHHHHHH
T ss_pred             --------HHHHHhccchhhHhhc-cCCCEEEEccCCCCCCCCCCCCC---HHHcCCCCEEEEeecCCc-cc-HHHHHHH
Confidence                    1111111 13467778 9999999999976  23334454   456899999999998744 43 4777777


Q ss_pred             hCCce
Q 017490          301 CGHLG  305 (370)
Q Consensus       301 ~g~i~  305 (370)
                      +..+.
T Consensus       220 ~~g~~  224 (263)
T 2d5c_A          220 AKGLK  224 (263)
T ss_dssp             HTTCE
T ss_pred             HCcCE
Confidence            65443

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=99.11  E-value=8.5e-11  Score=119.31  Aligned_cols=124  Identities=11%  Similarity=0.180  Sum_probs=95.8

Q ss_pred             CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccc--ccCCCCCHHHHHh---cCC
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD--EKGCHEDIFEFAS---KAD  251 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~---~aD  251 (370)
                      .++|||||+|.||..+|+.|...|++|.+|||++.+.....             .....  ......+++++++   .+|
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~-------------~~g~~g~~i~~~~s~~e~v~~l~~aD   70 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL-------------ANEAKGTKVVGAQSLKEMVSKLKKPR   70 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHH-------------HTTTTTSSCEECSSHHHHHHTBCSSC
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-------------hcccCCCceeccCCHHHHHhhccCCC
Confidence            36899999999999999999999999999999865421000             00000  0001367888887   499


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCC
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWT  314 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~  314 (370)
                      +|++++|..+.++.++ .+.+..|++|.++||++++...+...+.+.|.+..+.....-|...
T Consensus        71 vVil~Vp~~~~v~~vl-~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsGg  132 (484)
T 4gwg_A           71 RIILLVKAGQAVDDFI-EKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGG  132 (484)
T ss_dssp             EEEECSCSSHHHHHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESH
T ss_pred             EEEEecCChHHHHHHH-HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccCC
Confidence            9999999887888877 5678889999999999999999999999999998887554445443

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=99.10  E-value=1.5e-11  Score=119.41  Aligned_cols=137  Identities=22%  Similarity=0.231  Sum_probs=92.3

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCC
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKAD  251 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aD  251 (370)
                      ..+.+++|||||+|.||+.+|+.|+..|++|++++++.....                 +...+.+ ...++++++++||
T Consensus        12 ~~l~~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~-----------------~~a~~~G~~~~~~~e~~~~aD   74 (338)
T 1np3_A           12 SIIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATV-----------------AKAEAHGLKVADVKTAVAAAD   74 (338)
T ss_dssp             HHHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHH-----------------HHHHHTTCEEECHHHHHHTCS
T ss_pred             chhcCCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHH-----------------HHHHHCCCEEccHHHHHhcCC
Confidence            457889999999999999999999999999999998754310                 0111111 1127888999999


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCc---ccC---
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDP---ILK---  325 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~p---L~~---  325 (370)
                      +|++++|... ...++.++....|++|+++++++  + +..  ..+.+.    ...++||+...|..+.+.   ++.   
T Consensus        75 vVilavp~~~-~~~v~~~~i~~~l~~~~ivi~~~--g-v~~--~~~~~~----~~~~~~vv~~~P~gp~~a~~~l~~~G~  144 (338)
T 1np3_A           75 VVMILTPDEF-QGRLYKEEIEPNLKKGATLAFAH--G-FSI--HYNQVV----PRADLDVIMIAPKAPGHTVRSEFVKGG  144 (338)
T ss_dssp             EEEECSCHHH-HHHHHHHHTGGGCCTTCEEEESC--C-HHH--HTTSSC----CCTTCEEEEEEESSCSHHHHHHHHTTC
T ss_pred             EEEEeCCcHH-HHHHHHHHHHhhCCCCCEEEEcC--C-chh--HHHhhc----CCCCcEEEeccCCCCchhHHHHHhccC
Confidence            9999999543 45565545566799999999874  2 222  111111    123456666667545443   333   


Q ss_pred             CCceEEccCCC
Q 017490          326 FKNVLITPHVG  336 (370)
Q Consensus       326 ~~nvilTPHia  336 (370)
                      -.++++|||..
T Consensus       145 g~~~ii~~~~~  155 (338)
T 1np3_A          145 GIPDLIAIYQD  155 (338)
T ss_dssp             CCCEEEEEEEC
T ss_pred             CCeEEEEecCC
Confidence            55688999853

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=99.09  E-value=1.3e-10  Score=114.13  Aligned_cols=205  Identities=16%  Similarity=0.141  Sum_probs=111.5

Q ss_pred             ceEEEEeCCCCCHHHHhcCC-CCeEEEEeCcccCccchhhHhcCCeEEec---cCCCCCCCchhHHHHHHHHHHHHHHhH
Q 017490           80 YHLCVVKTMRLDSNCISRAN-QMKLIMQFGVGLEGVDINAATRCGIKVAR---IPGDVTGNAASCAELTIYLMLGLLRKQ  155 (370)
Q Consensus        80 ~d~~i~~~~~~~~~~l~~~~-~Lk~I~~~~~G~d~id~~~~~~~gI~V~n---~pg~~~~na~~vAE~~l~~~L~~~R~~  155 (370)
                      +|+++.. ..++++-++.++ +-.++...-.-.|.=-++.+.++||...-   .|.. + .+.++  -++..|-.+.-+.
T Consensus        85 adiIlkV-k~p~~~e~~~l~~g~~l~~~lh~~~~~~l~~~l~~~~it~ia~E~i~~~-~-~~~~l--~~l~~~s~iAGy~  159 (381)
T 3p2y_A           85 ADVVVKV-NPPTSDEISQLKPGSVLIGFLAPRTQPELASRLRIADVTAFAMESIPRI-S-RAQTM--DALSSQANVAGYK  159 (381)
T ss_dssp             SSEEECS-SCCCHHHHTTSCTTCEEEECCCTTTCHHHHHHHHHTTCEEEEGGGCCSS-G-GGGGG--CHHHHHHHHHHHH
T ss_pred             CCEEEEe-CCCChhHHhhccCCCEEEEEeccccCHHHHHHHHHCCCeEEEeeccccc-c-ccccc--eeecchhHHHHHH
Confidence            7877643 345566667664 55555544443444345678889988742   2211 0 01110  1111111111111


Q ss_pred             HHHHHHHHhcc-cCCC--CcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhc------
Q 017490          156 NEMRMAIEQKK-LGVP--TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVK------  226 (370)
Q Consensus       156 ~~~~~~~~~~~-~~~~--~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~------  226 (370)
                      .-......-++ ++..  ....+.+++|+|+|+|.||..+|+.++++|++|+++|+++.+..........+...      
T Consensus       160 Av~~aa~~l~~~~~~l~~~~~~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~  239 (381)
T 3p2y_A          160 AVLLGASLSTRFVPMLTTAAGTVKPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAG  239 (381)
T ss_dssp             HHHHHHHHCSSCSSCEECSSCEECCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-----
T ss_pred             HHHHHHHHhhhhhhhhhcccCCcCCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccc
Confidence            00000000111 1100  11257899999999999999999999999999999999865421100000000000      


Q ss_pred             -cccccccccc--cCCCCCHHHHHhcCCEEEEec--cCChhhhcccCHHHHhcCCCCcEEEEcC--CCccc
Q 017490          227 -NGIIDDLVDE--KGCHEDIFEFASKADVVVCCL--SLNKQTAGIVNKSFLSSMKKGSLLVNIA--RGGLL  290 (370)
Q Consensus       227 -~~~~~~~~~~--~~~~~~l~ell~~aDiV~l~l--P~t~~t~~li~~~~l~~mk~gailIN~s--Rg~~v  290 (370)
                       .+...+..++  .....++++.++++|+|+.++  |. ..+..+++++.++.||||+++||+|  +|+.+
T Consensus       240 ~~gya~~~~~~~~~~~~~~l~e~l~~aDIVI~tv~iPg-~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~~  309 (381)
T 3p2y_A          240 EGGYARELSEAERAQQQQALEDAITKFDIVITTALVPG-RPAPRLVTAAAATGMQPGSVVVDLAGETGGNC  309 (381)
T ss_dssp             --------CHHHHHHHHHHHHHHHTTCSEEEECCCCTT-SCCCCCBCHHHHHTSCTTCEEEETTGGGTCSB
T ss_pred             cccchhhhhHHHHhhhHHHHHHHHhcCCEEEECCCCCC-cccceeecHHHHhcCCCCcEEEEEeCCCCCcc
Confidence             0000000000  000135778999999999885  43 2356789999999999999999998  56543

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=99.04  E-value=9.2e-11  Score=114.13  Aligned_cols=134  Identities=16%  Similarity=0.181  Sum_probs=88.0

Q ss_pred             CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhc----C
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASK----A  250 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~----a  250 (370)
                      -++|||||+|.||.++|+.|+..|++|++||+++....                  ...+.+  ...++++++++    |
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~------------------~a~~~G~~~~~~~~e~~~~a~~~a   69 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAK------------------SAVDEGFDVSADLEATLQRAAAED   69 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHH------------------HHHHTTCCEESCHHHHHHHHHHTT
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHH------------------HHHHcCCeeeCCHHHHHHhcccCC
Confidence            35799999999999999999999999999999764311                  111112  13577777764    7


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEe---cCCCC---CCCCCCccc
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGID---VAWTE---PFDPNDPIL  324 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lD---V~~~E---Pl~~~~pL~  324 (370)
                      |+|++|+|. ..+..++.  .+..+++|++++|++.....-.+++.+.+.  ...  .++   ++..|   |......|+
T Consensus        70 DlVilavP~-~~~~~vl~--~l~~~~~~~iv~Dv~Svk~~i~~~~~~~~~--~~~--~v~~HPmaG~e~sG~~aa~~~Lf  142 (341)
T 3ktd_A           70 ALIVLAVPM-TAIDSLLD--AVHTHAPNNGFTDVVSVKTAVYDAVKARNM--QHR--YVGSHPMAGTANSGWSASMDGLF  142 (341)
T ss_dssp             CEEEECSCH-HHHHHHHH--HHHHHCTTCCEEECCSCSHHHHHHHHHTTC--GGG--EECEEECCSCC-CCGGGCCSSTT
T ss_pred             CEEEEeCCH-HHHHHHHH--HHHccCCCCEEEEcCCCChHHHHHHHHhCC--CCc--EecCCccccccccchhhhhhHHh
Confidence            999999994 46666662  344458999999998765433333433332  122  222   22222   222334677


Q ss_pred             CCCceEEccCC
Q 017490          325 KFKNVLITPHV  335 (370)
Q Consensus       325 ~~~nvilTPHi  335 (370)
                      .-.++++||+-
T Consensus       143 ~g~~~iltp~~  153 (341)
T 3ktd_A          143 KRAVWVVTFDQ  153 (341)
T ss_dssp             TTCEEEECCGG
T ss_pred             cCCeEEEEeCC
Confidence            77789999974

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=99.03  E-value=3.1e-10  Score=115.26  Aligned_cols=113  Identities=14%  Similarity=0.201  Sum_probs=89.9

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccccc---C--CCCCHHHHHhc
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK---G--CHEDIFEFASK  249 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~l~ell~~  249 (370)
                      ++.++|||||+|.||+.+|+.|...|++|.+|||++.+..                 .+....   +  ...+++++++.
T Consensus        13 ~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~-----------------~l~~~~~~~gi~~~~s~~e~v~~   75 (480)
T 2zyd_A           13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTE-----------------EVIAENPGKKLVPYYTVKEFVES   75 (480)
T ss_dssp             --CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHH-----------------HHHHHSTTSCEEECSSHHHHHHT
T ss_pred             cCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHH-----------------HHHhhCCCCCeEEeCCHHHHHhC
Confidence            4567899999999999999999999999999999865411                 111110   1  23578888887


Q ss_pred             ---CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          250 ---ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       250 ---aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                         +|+|++++|....++.++ .+..+.+++|.++||++.|...+...+.+.+.+..+.
T Consensus        76 l~~aDvVil~Vp~~~~v~~vl-~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~  133 (480)
T 2zyd_A           76 LETPRRILLMVKAGAGTDAAI-DSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFN  133 (480)
T ss_dssp             BCSSCEEEECSCSSSHHHHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             CCCCCEEEEECCCHHHHHHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCC
Confidence               999999999877888887 3667789999999999999988888899999886555

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=99.03  E-value=2.7e-10  Score=107.75  Aligned_cols=111  Identities=17%  Similarity=0.296  Sum_probs=86.4

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEEEe
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCC  256 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~  256 (370)
                      ++|+|||+|.||+.+|+.|...|++|.+||+++....                 ....... ...+++++++++|+|++|
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~-----------------~~~~~g~~~~~~~~~~~~~~D~vi~~   68 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIA-----------------DVIAAGAETASTAKAIAEQCDVIITM   68 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHH-----------------HHHHTTCEECSSHHHHHHHCSEEEEC
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHH-----------------HHHHCCCeecCCHHHHHhCCCEEEEE
Confidence            4799999999999999999999999999998754311                 0101001 235788899999999999


Q ss_pred             ccCChhhhcccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          257 LSLNKQTAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       257 lP~t~~t~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      +|....++.++.  .+..+.+++|.++|++++|...+.+.|.+.+.+..+.
T Consensus        69 v~~~~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~  119 (299)
T 1vpd_A           69 LPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVE  119 (299)
T ss_dssp             CSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCE
T ss_pred             CCCHHHHHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            997766776662  3456779999999999999887788899999875443

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=99.02  E-value=5.9e-10  Score=112.55  Aligned_cols=96  Identities=22%  Similarity=0.287  Sum_probs=76.5

Q ss_pred             cccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCC
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  251 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  251 (370)
                      +..+.||+++|+|+|.||+.+|++|+++|++|+++|+++.....                 .........++++++..+|
T Consensus       260 g~~L~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~-----------------Aa~~g~dv~~lee~~~~aD  322 (488)
T 3ond_A          260 DVMIAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQ-----------------ATMEGLQVLTLEDVVSEAD  322 (488)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHH-----------------HHHTTCEECCGGGTTTTCS
T ss_pred             CCcccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHH-----------------HHHhCCccCCHHHHHHhcC
Confidence            35689999999999999999999999999999999987543110                 0111112357788899999


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~  288 (370)
                      +|+.+.    .+.++++.+.++.||+|++++|+|++.
T Consensus       323 vVi~at----G~~~vl~~e~l~~mk~gaiVvNaG~~~  355 (488)
T 3ond_A          323 IFVTTT----GNKDIIMLDHMKKMKNNAIVCNIGHFD  355 (488)
T ss_dssp             EEEECS----SCSCSBCHHHHTTSCTTEEEEESSSTT
T ss_pred             EEEeCC----CChhhhhHHHHHhcCCCeEEEEcCCCC
Confidence            999763    456789999999999999999999983

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=99.02  E-value=3.1e-10  Score=107.45  Aligned_cols=111  Identities=19%  Similarity=0.229  Sum_probs=86.6

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEEEe
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCC  256 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~  256 (370)
                      ++|||||+|.||+.+|+.|...|++|.+||+++....                 ....... ...+++++++++|+|+++
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~-----------------~~~~~g~~~~~~~~~~~~~~D~vi~~   67 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVA-----------------AVVAQGAQACENNQKVAAASDIIFTS   67 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHH-----------------HHHTTTCEECSSHHHHHHHCSEEEEC
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHH-----------------HHHHCCCeecCCHHHHHhCCCEEEEE
Confidence            5899999999999999999999999999998754310                 0111101 235788999999999999


Q ss_pred             ccCChhhhcccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          257 LSLNKQTAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       257 lP~t~~t~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      +|....++.++.  .+..+.+++|.++|++++|...+.+.|.+.+.+..+.
T Consensus        68 vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~  118 (301)
T 3cky_A           68 LPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGID  118 (301)
T ss_dssp             CSSHHHHHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCE
T ss_pred             CCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            997777777764  2556778999999999999877788899988875443

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=99.02  E-value=3.4e-10  Score=106.76  Aligned_cols=109  Identities=14%  Similarity=0.138  Sum_probs=84.6

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccccc-CCCCCHHHHHhcCCEEEEe
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-GCHEDIFEFASKADVVVCC  256 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ell~~aDiV~l~  256 (370)
                      ++|||||+|.||+.+|+.|...|++|.+|| ++....                 .+.... ....+++++++++|+|++|
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~-----------------~~~~~g~~~~~~~~~~~~~~D~vi~~   65 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVAD-----------------ELLSLGAVNVETARQVTEFADIIFIM   65 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCH-----------------HHHTTTCBCCSSHHHHHHTCSEEEEC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHH-----------------HHHHcCCcccCCHHHHHhcCCEEEEE
Confidence            489999999999999999999999999999 654421                 111110 1346788999999999999


Q ss_pred             ccCChhhhcccCH--HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 017490          257 LSLNKQTAGIVNK--SFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHL  304 (370)
Q Consensus       257 lP~t~~t~~li~~--~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i  304 (370)
                      +|....++.++..  +..+.+++|.++|++++|...+.+.|.+.+.+..+
T Consensus        66 vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~  115 (295)
T 1yb4_A           66 VPDTPQVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEMGA  115 (295)
T ss_dssp             CSSHHHHHHHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHHHHHTTTE
T ss_pred             CCCHHHHHHHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            9977666666532  44567899999999999988888899999987433

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=99.00  E-value=1.3e-10  Score=107.68  Aligned_cols=110  Identities=18%  Similarity=0.235  Sum_probs=66.6

Q ss_pred             CCCcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcc--ccccccccchhhhccccccccccccC--CCCCHH
Q 017490          169 VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS--HSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIF  244 (370)
Q Consensus       169 ~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~  244 (370)
                      .....++.+++|||||+|.||+.+|+.|...|++|++|||++..  .......   .  .+.....+....+  ...+++
T Consensus        11 ~~~~~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~   85 (245)
T 3dtt_A           11 HHENLYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDA---M--GAPPFSQWLPEHPHVHLAAFA   85 (245)
T ss_dssp             --------CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC------------CCHHHHGGGSTTCEEEEHH
T ss_pred             cccccccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhh---h--cchhhhHHHhhcCceeccCHH
Confidence            34567899999999999999999999999999999999997543  0000000   0  0000001111111  235788


Q ss_pred             HHHhcCCEEEEeccCChhhhcccCHHH-HhcCCCCcEEEEcCC
Q 017490          245 EFASKADVVVCCLSLNKQTAGIVNKSF-LSSMKKGSLLVNIAR  286 (370)
Q Consensus       245 ell~~aDiV~l~lP~t~~t~~li~~~~-l~~mk~gailIN~sR  286 (370)
                      +++++||+|++++|......-+ . +. ...+ +|.++|+++-
T Consensus        86 e~~~~aDvVilavp~~~~~~~~-~-~i~~~~l-~g~ivi~~s~  125 (245)
T 3dtt_A           86 DVAAGAELVVNATEGASSIAAL-T-AAGAENL-AGKILVDIAN  125 (245)
T ss_dssp             HHHHHCSEEEECSCGGGHHHHH-H-HHCHHHH-TTSEEEECCC
T ss_pred             HHHhcCCEEEEccCcHHHHHHH-H-Hhhhhhc-CCCEEEECCC
Confidence            9999999999999966443322 1 22 2233 8999999994

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=98.99  E-value=3.3e-10  Score=106.99  Aligned_cols=107  Identities=23%  Similarity=0.274  Sum_probs=82.4

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCCEEEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVC  255 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~l  255 (370)
                      ++|||||+|.||+.+|+.|...|++|.+|||++....                 .+ .+.+  ...+++++++++|+|++
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~-----------------~~-~~~g~~~~~~~~~~~~~~Dvvi~   62 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACK-----------------EF-QDAGEQVVSSPADVAEKADRIIT   62 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHH-----------------HH-HTTTCEECSSHHHHHHHCSEEEE
T ss_pred             CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHH-----------------HH-HHcCCeecCCHHHHHhcCCEEEE
Confidence            3799999999999999999999999999999764311                 01 1111  23578899999999999


Q ss_pred             eccCChhhhcccCH--HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 017490          256 CLSLNKQTAGIVNK--SFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG  302 (370)
Q Consensus       256 ~lP~t~~t~~li~~--~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g  302 (370)
                      |+|....++.++..  ..++.+++|.++|+++...+-+.+.+.+.+.+.
T Consensus        63 ~vp~~~~~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~  111 (296)
T 2gf2_A           63 MLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKM  111 (296)
T ss_dssp             CCSSHHHHHHHHHSTTSGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHT
T ss_pred             eCCCHHHHHHHHhCchhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence            99977777776542  255678999999998887776677777777653

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=98.99  E-value=8.2e-10  Score=112.59  Aligned_cols=110  Identities=15%  Similarity=0.227  Sum_probs=89.2

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccc-c---cC--CCCCHHHHHhc--
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-E---KG--CHEDIFEFASK--  249 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~--~~~~l~ell~~--  249 (370)
                      .+|||||+|.||+.+|+.|...|++|.+|||++.+..                 .+.. .   .+  ...+++++++.  
T Consensus        11 ~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~-----------------~l~~~~~~~~gi~~~~s~~e~v~~l~   73 (497)
T 2p4q_A           11 ADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVD-----------------HFLANEAKGKSIIGATSIEDFISKLK   73 (497)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHH-----------------HHHHTTTTTSSEECCSSHHHHHHTSC
T ss_pred             CCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHH-----------------HHHcccccCCCeEEeCCHHHHHhcCC
Confidence            4799999999999999999999999999999865421                 1111 0   11  34678888877  


Q ss_pred             -CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          250 -ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       250 -aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                       +|+|++++|....++.++ .+....+++|.++|+++.+...+...+.+.+.+..+.
T Consensus        74 ~aDvVil~Vp~~~~v~~vl-~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~  129 (497)
T 2p4q_A           74 RPRKVMLLVKAGAPVDALI-NQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGIL  129 (497)
T ss_dssp             SSCEEEECCCSSHHHHHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEEcCChHHHHHHH-HHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCc
Confidence             999999999877888877 4677789999999999999988888899999876554

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=98.99  E-value=1.7e-09  Score=101.28  Aligned_cols=142  Identities=15%  Similarity=0.203  Sum_probs=93.0

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHHhcCCEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKADVV  253 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~aDiV  253 (370)
                      ++|+|||+|.||+.+|+.|...|++|+++|+++.....                  ..+.+    ...+++++ +++|+|
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~------------------~~~~g~~~~~~~~~~~~-~~~D~v   61 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEK------------------AVERQLVDEAGQDLSLL-QTAKII   61 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHH------------------HHHTTSCSEEESCGGGG-TTCSEE
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH------------------HHhCCCCccccCCHHHh-CCCCEE
Confidence            37999999999999999999999999999987543110                  00111    12467778 899999


Q ss_pred             EEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCC---CCCCCCCcccCCCceE
Q 017490          254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWT---EPFDPNDPILKFKNVL  330 (370)
Q Consensus       254 ~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~---EPl~~~~pL~~~~nvi  330 (370)
                      ++++|. ..+..++. +....+++++++|+++.......+.+.+.+.  ++-+. .-++..   .|-...+.++.-+.++
T Consensus        62 i~av~~-~~~~~~~~-~l~~~~~~~~~vv~~~~~~~~~~~~~~~~~~--~~~~~-~p~~g~~~~gp~~a~~~~~~g~~~~  136 (279)
T 2f1k_A           62 FLCTPI-QLILPTLE-KLIPHLSPTAIVTDVASVKTAIAEPASQLWS--GFIGG-HPMAGTAAQGIDGAEENLFVNAPYV  136 (279)
T ss_dssp             EECSCH-HHHHHHHH-HHGGGSCTTCEEEECCSCCHHHHHHHHHHST--TCEEE-EECCCCSCSSGGGCCTTTTTTCEEE
T ss_pred             EEECCH-HHHHHHHH-HHHhhCCCCCEEEECCCCcHHHHHHHHHHhC--CEeec-CcccCCccCCHHHHhHHHhCCCcEE
Confidence            999994 45555553 4556789999999998766655555555443  22221 123321   2322333566666788


Q ss_pred             EccCCCCccHHHHH
Q 017490          331 ITPHVGGVTEHSYR  344 (370)
Q Consensus       331 lTPHia~~t~~~~~  344 (370)
                      ++|+-+. +.+..+
T Consensus       137 ~~~~~~~-~~~~~~  149 (279)
T 2f1k_A          137 LTPTEYT-DPEQLA  149 (279)
T ss_dssp             EEECTTC-CHHHHH
T ss_pred             EecCCCC-CHHHHH
Confidence            9997543 444443

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=98.98  E-value=6.5e-10  Score=106.23  Aligned_cols=110  Identities=18%  Similarity=0.239  Sum_probs=85.2

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCCEEEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVC  255 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~l  255 (370)
                      ++|||||+|.||+.+|+.|...|++|.+||++.....                 .+ .+.+  ...+++++++++|+|++
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~-----------------~~-~~~g~~~~~~~~~~~~~~DvVi~   92 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCD-----------------LF-IQEGARLGRTPAEVVSTCDITFA   92 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGH-----------------HH-HHTTCEECSCHHHHHHHCSEEEE
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHH-----------------HH-HHcCCEEcCCHHHHHhcCCEEEE
Confidence            6899999999999999999999999999999755421                 01 1111  23578888999999999


Q ss_pred             eccCChhhhcccCH--HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          256 CLSLNKQTAGIVNK--SFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       256 ~lP~t~~t~~li~~--~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      ++|....++.++..  ..++.+++|.++|+++++.....+.+.+.+....+.
T Consensus        93 av~~~~~~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~  144 (316)
T 2uyy_A           93 CVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGR  144 (316)
T ss_dssp             CCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             eCCCHHHHHHHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            99976666665532  245678999999999998877788888888765444

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=98.96  E-value=4.2e-10  Score=106.04  Aligned_cols=180  Identities=16%  Similarity=0.114  Sum_probs=118.7

Q ss_pred             eCCCCChhhhcC-----cceEEEEeCCCCCHHHHhcCCCCeEEEEeCcccCccchhhHhcCCeEEeccCCCCCCCchhHH
Q 017490           67 VVPISDVPDVIA-----NYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA  141 (370)
Q Consensus        67 ~~~~~~~~~~~~-----~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~na~~vA  141 (370)
                      .++++++.+.+.     +.+.+.+ +.|+..+++..++.+.-.+....+++.++.    +.|-.    .|+   |+... 
T Consensus        48 ~~~~~~l~~~i~~l~~~~~~G~nv-tiP~k~~i~~~ld~l~~~A~~~gavnti~~----~~g~~----~g~---nTd~~-  114 (275)
T 2hk9_A           48 EINPEELKKAFEGFKALKVKGINV-TVPFKEEIIPLLDYVEDTAKEIGAVNTVKF----ENGKA----YGY---NTDWI-  114 (275)
T ss_dssp             ECCGGGHHHHHHHHHHHTCCEEEE-CTTSTTTTGGGCSEECHHHHHHTCCCEEEE----ETTEE----EEE---CCHHH-
T ss_pred             ECCHHHHHHHHHHHHhCCCCEEEE-CccCHHHHHHHHHHhhHHHHHhCCcceEEe----eCCEE----Eee---cCCHH-
Confidence            345566655443     3455544 578888898888888888888888888764    34522    233   33221 


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccc
Q 017490          142 ELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSS  221 (370)
Q Consensus       142 E~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~  221 (370)
                          +++.++.|                 .+.++.|++++|||+|.+|+++|+.|...|++|.++||+..+..       
T Consensus       115 ----G~~~~l~~-----------------~~~~~~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~-------  166 (275)
T 2hk9_A          115 ----GFLKSLKS-----------------LIPEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAI-------  166 (275)
T ss_dssp             ----HHHHHHHH-----------------HCTTGGGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHH-------
T ss_pred             ----HHHHHHHH-----------------hCCCcCCCEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHH-------
Confidence                44444432                 13467899999999999999999999999999999999854311       


Q ss_pred             hhhhccccccccccccC--CCCCHHHHHhcCCEEEEeccCCh--hhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 017490          222 ALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCCLSLNK--QTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAH  297 (370)
Q Consensus       222 ~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~l~lP~t~--~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~  297 (370)
                                .+....+  ...++++.++++|+|++++|...  ++...++   ++.+++|.++++++.   .. ..+.+
T Consensus       167 ----------~l~~~~g~~~~~~~~~~~~~aDiVi~atp~~~~~~~~~~i~---~~~l~~g~~viDv~~---~~-t~ll~  229 (275)
T 2hk9_A          167 ----------KLAQKFPLEVVNSPEEVIDKVQVIVNTTSVGLKDEDPEIFN---YDLIKKDHVVVDIIY---KE-TKLLK  229 (275)
T ss_dssp             ----------HHTTTSCEEECSCGGGTGGGCSEEEECSSTTSSTTCCCSSC---GGGCCTTSEEEESSS---SC-CHHHH
T ss_pred             ----------HHHHHcCCeeehhHHhhhcCCCEEEEeCCCCCCCCCCCCCC---HHHcCCCCEEEEcCC---Ch-HHHHH
Confidence                      1111111  12367788899999999999754  2223444   456899999999988   23 33555


Q ss_pred             HHHhCCc
Q 017490          298 YLECGHL  304 (370)
Q Consensus       298 aL~~g~i  304 (370)
                      ..++..+
T Consensus       230 ~a~~~g~  236 (275)
T 2hk9_A          230 KAKEKGA  236 (275)
T ss_dssp             HHHHTTC
T ss_pred             HHHHCcC
Confidence            5554333

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=98.96  E-value=8.4e-10  Score=111.62  Aligned_cols=150  Identities=13%  Similarity=0.192  Sum_probs=96.6

Q ss_pred             ceEEEEecCchhHHHHHHhccC--CCEEEEEcCCCccccccccccchhhhccccccccccc---cC--CCCCHHHHHhcC
Q 017490          178 KTVFILGFGNIGVELAKRLRPF--GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE---KG--CHEDIFEFASKA  250 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~--G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~l~ell~~a  250 (370)
                      ++|+|||+|.||..+|..|...  |++|++||++..+.......  ..+..+....+....   .+  ...++++.+++|
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g--~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~a   83 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSP--TLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEA   83 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSS--SCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHC
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCC--CCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcC
Confidence            5899999999999999999877  89999999976432110000  000000000001110   11  235778889999


Q ss_pred             CEEEEeccCChhhhccc-----------C--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEe---cCCC
Q 017490          251 DVVVCCLSLNKQTAGIV-----------N--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGID---VAWT  314 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li-----------~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lD---V~~~  314 (370)
                      |+|++|+|......+.+           .  +...+.|++|+++|++|+.++-..+.+.+.+.+....  ++|   ++.+
T Consensus        84 DvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~--~~d~~V~~~P  161 (467)
T 2q3e_A           84 DLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKP--NLNLQVLSNP  161 (467)
T ss_dssp             SEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCT--TCEEEEEECC
T ss_pred             CEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCC--CCCeEEEeCH
Confidence            99999999654433321           1  2355678999999999999988888899999876422  234   4667


Q ss_pred             CCCCCCCc---ccCCCceEE
Q 017490          315 EPFDPNDP---ILKFKNVLI  331 (370)
Q Consensus       315 EPl~~~~p---L~~~~nvil  331 (370)
                      |++.+...   +...+++++
T Consensus       162 e~~~~G~~~~d~~~~~rivv  181 (467)
T 2q3e_A          162 EFLAEGTAIKDLKNPDRVLI  181 (467)
T ss_dssp             CCCCTTSHHHHHHSCSCEEE
T ss_pred             HHhhcccchhhccCCCEEEE
Confidence            77655553   355566654

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=98.95  E-value=6.3e-10  Score=104.47  Aligned_cols=107  Identities=18%  Similarity=0.306  Sum_probs=82.2

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEEEe
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCC  256 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~  256 (370)
                      ++|||||+|.||+.+|+.|.. |++|.+|||++.....                 ...... ... ++++++++|+|++|
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~-----------------~~~~g~~~~~-~~~~~~~~D~vi~~   62 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALR-----------------HQEEFGSEAV-PLERVAEARVIFTC   62 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHH-----------------HHHHHCCEEC-CGGGGGGCSEEEEC
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHH-----------------HHHCCCcccC-HHHHHhCCCEEEEe
Confidence            479999999999999999999 9999999997654110                 000000 112 66778899999999


Q ss_pred             ccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 017490          257 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHL  304 (370)
Q Consensus       257 lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i  304 (370)
                      +|....++.++ .+..+.+++|.++|+++.+...+.+.+.+.+.+..+
T Consensus        63 v~~~~~~~~v~-~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~  109 (289)
T 2cvz_A           63 LPTTREVYEVA-EALYPYLREGTYWVDATSGEPEASRRLAERLREKGV  109 (289)
T ss_dssp             CSSHHHHHHHH-HHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTE
T ss_pred             CCChHHHHHHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            99766676665 455677899999999999988888899999987543

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=98.91  E-value=5.2e-10  Score=112.47  Aligned_cols=103  Identities=26%  Similarity=0.343  Sum_probs=75.2

Q ss_pred             cccCCCC-cccccC-ceEEEEecCchhHHHHHHhccC------CCEEEEEcCCCccccccccccchhhhccccccccccc
Q 017490          165 KKLGVPT-GETLLG-KTVFILGFGNIGVELAKRLRPF------GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE  236 (370)
Q Consensus       165 ~~~~~~~-~~~l~g-~tvGIiGlG~IG~~vA~~l~~~------G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (370)
                      ++|..+. ...|+| ++|||||+|.||.++|+.|+..      |++|++.++...+..                 +...+
T Consensus        40 ~~w~~~~~~~~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~-----------------e~A~e  102 (525)
T 3fr7_A           40 GRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSF-----------------DEARA  102 (525)
T ss_dssp             CGGGGGGHHHHTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCH-----------------HHHHH
T ss_pred             cccccccChHHhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhH-----------------HHHHH
Confidence            3455432 467899 9999999999999999999987      999886665432210                 01111


Q ss_pred             cC-C-----CCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCC
Q 017490          237 KG-C-----HEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       237 ~~-~-----~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg  287 (370)
                      .+ .     ..++.+++++||+|++++|..... .++. +.++.||+|++| -.+-|
T Consensus       103 ~G~~v~d~ta~s~aEAa~~ADVVILaVP~~~~~-eVl~-eI~p~LK~GaIL-s~AaG  156 (525)
T 3fr7_A          103 AGFTEESGTLGDIWETVSGSDLVLLLISDAAQA-DNYE-KIFSHMKPNSIL-GLSHG  156 (525)
T ss_dssp             TTCCTTTTCEEEHHHHHHHCSEEEECSCHHHHH-HHHH-HHHHHSCTTCEE-EESSS
T ss_pred             CCCEEecCCCCCHHHHHhcCCEEEECCChHHHH-HHHH-HHHHhcCCCCeE-EEeCC
Confidence            12 1     247899999999999999976554 4665 688999999985 55666

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=98.91  E-value=1.1e-09  Score=111.14  Aligned_cols=116  Identities=16%  Similarity=0.238  Sum_probs=89.5

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccccc---C--CCCCHHHHHhc---
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK---G--CHEDIFEFASK---  249 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~l~ell~~---  249 (370)
                      ++|||||+|.||+.+|+.|...|++|.+|||+.....                 .+....   +  ...+++++++.   
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~-----------------~l~~~~~~~gi~~~~s~~e~v~~l~~   68 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTE-----------------EVFKEHQDKNLVFTKTLEEFVGSLEK   68 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHH-----------------HHHHHTTTSCEEECSSHHHHHHTBCS
T ss_pred             CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHH-----------------HHHHhCcCCCeEEeCCHHHHHhhccC
Confidence            5799999999999999999999999999999754311                 011110   1  23578888876   


Q ss_pred             CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEec
Q 017490          250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV  311 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV  311 (370)
                      +|+|++++|....++.++ .+....+++|.++|+++.|...+...+.+.+.+..+.....-|
T Consensus        69 aDvVilavp~~~~v~~vl-~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~pv  129 (474)
T 2iz1_A           69 PRRIMLMVQAGAATDATI-KSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGV  129 (474)
T ss_dssp             SCEEEECCCTTHHHHHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEEE
T ss_pred             CCEEEEEccCchHHHHHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECCCC
Confidence            999999999877777777 3566789999999999999888888898888876555333333

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=98.91  E-value=1.6e-09  Score=110.07  Aligned_cols=117  Identities=14%  Similarity=0.226  Sum_probs=89.9

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccc-c---cC--CCCCHHHHHh---
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-E---KG--CHEDIFEFAS---  248 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~--~~~~l~ell~---  248 (370)
                      ++|||||+|.||+.+|+.|...|++|.+|||+..+..                 .+.. .   .+  ...+++++++   
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~-----------------~l~~~~~~g~gi~~~~~~~e~v~~l~   65 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVD-----------------DFLANEAKGTKVLGAHSLEEMVSKLK   65 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHH-----------------HHHHTTTTTSSCEECSSHHHHHHHBC
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHH-----------------HHHhccccCCCeEEeCCHHHHHhhcc
Confidence            4799999999999999999999999999999765421                 0110 0   11  2357888875   


Q ss_pred             cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecC
Q 017490          249 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVA  312 (370)
Q Consensus       249 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~  312 (370)
                      .+|+|++++|....++.++. +....+++|.++|+++.|...+...+.+.+.+..+.....-|+
T Consensus        66 ~aDvVilaVp~~~~v~~vl~-~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~pv~  128 (482)
T 2pgd_A           66 KPRRIILLVKAGQAVDNFIE-KLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVS  128 (482)
T ss_dssp             SSCEEEECSCTTHHHHHHHH-HHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             CCCEEEEeCCChHHHHHHHH-HHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCCCC
Confidence            89999999998777787774 5667799999999999998888888888888765554433443

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=98.89  E-value=2.8e-09  Score=104.49  Aligned_cols=108  Identities=24%  Similarity=0.311  Sum_probs=82.0

Q ss_pred             cccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHh-cCC
Q 017490          174 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFAS-KAD  251 (370)
Q Consensus       174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~-~aD  251 (370)
                      +|.||+|+|+|+|+||+.+|++|..+|++|+++|++.....                 +..++.+ ...+.++++. +||
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~-----------------~~a~~~ga~~v~~~~ll~~~~D  232 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVS-----------------AAVAEEGADAVAPNAIYGVTCD  232 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHH-----------------HHHHHHCCEECCGGGTTTCCCS
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHH-----------------HHHHHcCCEEEChHHHhccCCc
Confidence            69999999999999999999999999999999998654310                 1111111 2235556665 899


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      +++.|.     +.++|+.+.++.|+ ..++++.+++++.+++ +.+.|+++.+.
T Consensus       233 Ivip~a-----~~~~I~~~~~~~lg-~~iV~e~An~p~t~~e-a~~~L~~~Gi~  279 (364)
T 1leh_A          233 IFAPCA-----LGAVLNDFTIPQLK-AKVIAGSADNQLKDPR-HGKYLHELGIV  279 (364)
T ss_dssp             EEEECS-----CSCCBSTTHHHHCC-CSEECCSCSCCBSSHH-HHHHHHHHTCE
T ss_pred             Eeeccc-----hHHHhCHHHHHhCC-CcEEEeCCCCCcccHH-HHHHHHhCCCE
Confidence            998773     66789888888884 5789999999988755 56777777664

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=98.41  E-value=1.7e-10  Score=103.92  Aligned_cols=94  Identities=20%  Similarity=0.243  Sum_probs=72.2

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEE
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  254 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  254 (370)
                      +.+++|||||+|.||+.+|+.|...|++|.++||+....                  .+........+++++++++|+|+
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~------------------~~~~~g~~~~~~~~~~~~aDvVi   78 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQVS------------------SLLPRGAEVLCYSEAASRSDVIV   78 (201)
Confidence            667899999999999999999999999999999875420                  11111111236778889999999


Q ss_pred             EeccCChhhhcccCHHHHhcCCCCcEEEEcCCCccc
Q 017490          255 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLL  290 (370)
Q Consensus       255 l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~v  290 (370)
                      +++|.. .++.++   .+..+++|+++||+++|-..
T Consensus        79 lav~~~-~~~~v~---~l~~~~~~~ivI~~~~G~~~  110 (201)
T 2yjz_A           79 LAVHRE-HYDFLA---ELADSLKGRVLIDVSNNQKM  110 (201)
Confidence            999964 577766   24557789999999999754

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=98.87  E-value=2e-09  Score=109.22  Aligned_cols=126  Identities=20%  Similarity=0.284  Sum_probs=89.8

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhc---CCEEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK---ADVVV  254 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiV~  254 (370)
                      ++|||||+|.||+.+|+.|...|++|.+|||+.........       ..+.... ........+++++++.   +|+|+
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~-------~~g~~~~-~~~i~~~~~~~e~v~~l~~aDvVi   73 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMK-------ANASAPF-AGNLKAFETMEAFAASLKKPRKAL   73 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHH-------HTTTSTT-GGGEEECSCHHHHHHHBCSSCEEE
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-------hcCCCCC-CCCeEEECCHHHHHhcccCCCEEE
Confidence            47999999999999999999999999999997543110000       0000000 0001123578888874   99999


Q ss_pred             EeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecC
Q 017490          255 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVA  312 (370)
Q Consensus       255 l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~  312 (370)
                      +++|....++.++ .+....+++|.++|+++.|...+.+.+.+.+.+..+.....-|.
T Consensus        74 laVp~~~~v~~vl-~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv~  130 (478)
T 1pgj_A           74 ILVQAGAATDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGIS  130 (478)
T ss_dssp             ECCCCSHHHHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEE
T ss_pred             EecCChHHHHHHH-HHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeecc
Confidence            9999877777777 45667799999999999998888888999998765554333343

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=98.85  E-value=4.3e-09  Score=100.28  Aligned_cols=145  Identities=15%  Similarity=0.112  Sum_probs=90.0

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEE
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  254 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  254 (370)
                      -+.|+|||||+|.||..+|+.++ .|++|++||+++........    . +    .++.........++++ +++||+|+
T Consensus        10 ~~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~----~-l----~~~~~~~i~~~~~~~~-~~~aDlVi   78 (293)
T 1zej_A           10 HHHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAARE----Q-I----PEELLSKIEFTTTLEK-VKDCDIVM   78 (293)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHH----H-S----CGGGGGGEEEESSCTT-GGGCSEEE
T ss_pred             cCCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHH----H-H----HHHHhCCeEEeCCHHH-HcCCCEEE
Confidence            35789999999999999999999 99999999998654211000    0 0    0000000101245655 79999999


Q ss_pred             EeccCChhhhcccCHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceEEcc
Q 017490          255 CCLSLNKQTAGIVNKSFLSSMKKGSLLV-NIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITP  333 (370)
Q Consensus       255 l~lP~t~~t~~li~~~~l~~mk~gailI-N~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTP  333 (370)
                      .++|...+.+..+-.+ +..+ +|++++ |+|.-.+   ..+.+.+. ...+..++-.|.  |.      ...+-+.++|
T Consensus        79 eavpe~~~vk~~l~~~-l~~~-~~~IlasntSti~~---~~~a~~~~-~~~r~~G~Hf~~--Pv------~~~~lveiv~  144 (293)
T 1zej_A           79 EAVFEDLNTKVEVLRE-VERL-TNAPLCSNTSVISV---DDIAERLD-SPSRFLGVHWMN--PP------HVMPLVEIVI  144 (293)
T ss_dssp             ECCCSCHHHHHHHHHH-HHTT-CCSCEEECCSSSCH---HHHHTTSS-CGGGEEEEEECS--ST------TTCCEEEEEE
T ss_pred             EcCcCCHHHHHHHHHH-HhcC-CCCEEEEECCCcCH---HHHHHHhh-cccceEeEEecC--cc------ccCCEEEEEC
Confidence            9999988766654333 5667 999884 8877544   44444442 233456677666  32      3356677777


Q ss_pred             CCCCccHHHHHH
Q 017490          334 HVGGVTEHSYRS  345 (370)
Q Consensus       334 Hia~~t~~~~~~  345 (370)
                      +-. .++++.++
T Consensus       145 g~~-t~~~~~~~  155 (293)
T 1zej_A          145 SRF-TDSKTVAF  155 (293)
T ss_dssp             CTT-CCHHHHHH
T ss_pred             CCC-CCHHHHHH
Confidence            532 23444443

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.81  E-value=1.6e-08  Score=98.85  Aligned_cols=189  Identities=14%  Similarity=0.113  Sum_probs=116.8

Q ss_pred             cceEEEEeCCCCCHHHHhcCCCCeEEEEeCcccCccchhhHhcCCeEEecc---CCCCCCC---chhHHHHHH--HHHHH
Q 017490           79 NYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARI---PGDVTGN---AASCAELTI--YLMLG  150 (370)
Q Consensus        79 ~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~---pg~~~~n---a~~vAE~~l--~~~L~  150 (370)
                      ++|+++....|...+.....+++.++......++.-.++.+.+.|+...|.   |.- .+.   -.++++.+-  +.++.
T Consensus        66 ~ad~i~~vksP~~~~~~~~~~g~~~~~y~~~~~~~~l~~~l~~~gi~~~~~etvp~k-~~~~~~l~~~s~~Ag~~a~~~g  144 (361)
T 1pjc_A           66 SREMVVKVKEPLPAEYDLMQKDQLLFTYLHLAAARELTEQLMRVGLTAIAYETVELP-NRSLPLLTPMSIIAGRLSVQFG  144 (361)
T ss_dssp             TSSEEECSSCCCGGGGGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCT-TSCCTTTHHHHHHHHHHHHHHH
T ss_pred             cCCeEEEECCCCHHHHHhhcCCCEEEEEeccccCHHHHHHHHHcCCeEEEEeeeEcc-cCCccccCcchHHHHHHHHHHH
Confidence            789877655565555444457777777666666665566778888887653   532 111   123444333  33333


Q ss_pred             HHHhHHHHHHHHHhcc-cCCCCcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccc
Q 017490          151 LLRKQNEMRMAIEQKK-LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGI  229 (370)
Q Consensus       151 ~~R~~~~~~~~~~~~~-~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~  229 (370)
                      .. ++..    ...|+ +....-..+.+++|+|+|.|.+|+.+++.++.+|++|+++|++..+......           
T Consensus       145 A~-nt~~----~~~g~G~~l~~l~~l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~-----------  208 (361)
T 1pjc_A          145 AR-FLER----QQGGRGVLLGGVPGVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLET-----------  208 (361)
T ss_dssp             HH-HTSG----GGTSCCCCTTCBTTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-----------
T ss_pred             HH-HHhh----ccCCCceeccCCCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH-----------
Confidence            22 1111    01111 1100112477899999999999999999999999999999998654211000           


Q ss_pred             cccccccc----CCCCCHHHHHhcCCEEEEeccCCh-hhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          230 IDDLVDEK----GCHEDIFEFASKADVVVCCLSLNK-QTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       230 ~~~~~~~~----~~~~~l~ell~~aDiV~l~lP~t~-~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                        ......    ....++.+.+..+|+|+.+++... .+..++.++.++.||+|++++|++-
T Consensus       209 --~~~~~~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~~  268 (361)
T 1pjc_A          209 --LFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAV  268 (361)
T ss_dssp             --HHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred             --hhCceeEeeeCCHHHHHHHHcCCCEEEECCCcCCCCCCeecCHHHHhhCCCCCEEEEEec
Confidence              000000    011346677789999999987533 2345668889999999999999984

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=98.81  E-value=2.1e-09  Score=99.84  Aligned_cols=105  Identities=19%  Similarity=0.243  Sum_probs=76.6

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEec
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  257 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  257 (370)
                      ++|||||+|.||..+|+.|...|++|+++|+...+..  .             ..+. +.+...++++++++||+|++|+
T Consensus         1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~--~-------------~~~~-~~g~~~~~~~~~~~aDvvi~~v   64 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPST--I-------------ERAR-TVGVTETSEEDVYSCPVVISAV   64 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHH--H-------------HHHH-HHTCEECCHHHHHTSSEEEECS
T ss_pred             CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHH--H-------------HHHH-HCCCcCCHHHHHhcCCEEEEEC
Confidence            3799999999999999999999999999987311100  0             0010 1110046778889999999999


Q ss_pred             cCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 017490          258 SLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG  302 (370)
Q Consensus       258 P~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g  302 (370)
                      |.....+.+  .+..+.+++  ++|+++.+...+.+.+.+.+.+.
T Consensus        65 ~~~~~~~~~--~~~~~~~~~--~vi~~s~~~~~~~~~l~~~~~~~  105 (264)
T 1i36_A           65 TPGVALGAA--RRAGRHVRG--IYVDINNISPETVRMASSLIEKG  105 (264)
T ss_dssp             CGGGHHHHH--HHHHTTCCS--EEEECSCCCHHHHHHHHHHCSSS
T ss_pred             CCHHHHHHH--HHHHHhcCc--EEEEccCCCHHHHHHHHHHHhhC
Confidence            976655554  456667777  99999988877778888888653

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.80  E-value=5.4e-09  Score=88.45  Aligned_cols=93  Identities=19%  Similarity=0.280  Sum_probs=68.3

Q ss_pred             CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEe
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  256 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  256 (370)
                      |++|+|||.|.||+.+++.|+..|++|.++||+..+...-.             ...........++++.++++|+|+++
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a-------------~~~~~~~~~~~~~~~~~~~~Divi~a   87 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFA-------------EKYEYEYVLINDIDSLIKNNDVIITA   87 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHH-------------HHHTCEEEECSCHHHHHHTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHH-------------HHhCCceEeecCHHHHhcCCCEEEEe
Confidence            88999999999999999999999999999999765421000             00000001246788999999999999


Q ss_pred             ccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490          257 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       257 lP~t~~t~~li~~~~l~~mk~gailIN~sRg~  288 (370)
                      +|..   ..++..   +.+++|.+++|++...
T Consensus        88 t~~~---~~~~~~---~~l~~g~~vid~~~p~  113 (144)
T 3oj0_A           88 TSSK---TPIVEE---RSLMPGKLFIDLGNPP  113 (144)
T ss_dssp             SCCS---SCSBCG---GGCCTTCEEEECCSSC
T ss_pred             CCCC---CcEeeH---HHcCCCCEEEEccCCc
Confidence            8865   345554   4478899999998753

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=98.78  E-value=9.8e-09  Score=103.40  Aligned_cols=189  Identities=14%  Similarity=0.070  Sum_probs=109.4

Q ss_pred             CchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccc-------ccCceEEEEecCchhHHHHHHhccCCCEEEEEcC
Q 017490          136 NAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGET-------LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR  208 (370)
Q Consensus       136 na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~-------l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr  208 (370)
                      |-..|.|.+.+.++.         .....++|..+.+..       ..=++|||||+|.||..+|..++..|++|++||+
T Consensus        15 ~~~~~~~~~~~~~~~---------a~~~~~~w~~p~~~~~~~~~~~~~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~   85 (460)
T 3k6j_A           15 NLYFQGSEVRSYLME---------AHSLAGQWSLPNDRGDHTNSEAYDVNSVAIIGGGTMGKAMAICFGLAGIETFLVVR   85 (460)
T ss_dssp             GGGGCBCHHHHHHHH---------TTCCTTSCBCSTTSCBTTSCCCCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             chhhhhHHHHHHHHh---------HHHhhccccCCCCccccccCCcccCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEC
Confidence            555677777777776         122235676553211       1226899999999999999999999999999999


Q ss_pred             CCccccccccccchhhhcccccc-----ccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEE-
Q 017490          209 SWASHSQVSCQSSALAVKNGIID-----DLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLV-  282 (370)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailI-  282 (370)
                      ++.+.........+.....+.+.     ..........+++ .+++||+|+.++|...+.+.-+-++..+.++++++|+ 
T Consensus        86 ~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlas  164 (460)
T 3k6j_A           86 NEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGT  164 (460)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCTTCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEE
T ss_pred             cHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEe
Confidence            86521000000000000000000     0000001124564 6889999999999877665544456777899999996 


Q ss_pred             EcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceEEccCCCCccHHHHHHHH
Q 017490          283 NIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMA  347 (370)
Q Consensus       283 N~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~  347 (370)
                      |+|.   +....+.+.+.. .-..+++..|.  |.+      .++-|.++|+-. .++++.+++.
T Consensus       165 nTSs---l~i~~ia~~~~~-p~r~iG~Hffn--Pv~------~m~LvEIv~g~~-Ts~e~~~~~~  216 (460)
T 3k6j_A          165 NTSS---LDLNEISSVLRD-PSNLVGIHFFN--PAN------VIRLVEIIYGSH-TSSQAIATAF  216 (460)
T ss_dssp             CCSS---SCHHHHHTTSSS-GGGEEEEECCS--STT------TCCEEEEECCSS-CCHHHHHHHH
T ss_pred             cCCC---hhHHHHHHhccC-CcceEEEEecc--hhh------hCCEEEEEeCCC-CCHHHHHHHH
Confidence            5554   344556555543 33456777777  421      244466777522 2444444433

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=98.77  E-value=1.9e-08  Score=100.64  Aligned_cols=151  Identities=13%  Similarity=0.096  Sum_probs=93.6

Q ss_pred             CcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccc----cCCCCCHHHH
Q 017490          171 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE----KGCHEDIFEF  246 (370)
Q Consensus       171 ~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~el  246 (370)
                      .+++..-++|+|||+|.||..+|..|+. |++|++||+++.+.........  +..+..+.++..+    .....++++.
T Consensus        30 ~~r~~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~--~i~e~~l~~ll~~~~~~l~~ttd~~ea  106 (432)
T 3pid_A           30 MGRGSEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKIS--PIVDKEIQEYLAEKPLNFRATTDKHDA  106 (432)
T ss_dssp             -----CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCC--SSCCHHHHHHHHHSCCCEEEESCHHHH
T ss_pred             cccccCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCC--ccccccHHHHHhhccCCeEEEcCHHHH
Confidence            4566777899999999999999999988 9999999998654211000000  0000000001110    0123578899


Q ss_pred             HhcCCEEEEeccCChh-------hhcccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCC
Q 017490          247 ASKADVVVCCLSLNKQ-------TAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPF  317 (370)
Q Consensus       247 l~~aDiV~l~lP~t~~-------t~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl  317 (370)
                      +++||+|++|+|...+       +..+..  +...+ +++|+++|+.|+-++-..+.+.+.+.+..+.      |.+|-+
T Consensus       107 ~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~~v~------~sPe~~  179 (432)
T 3pid_A          107 YRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKERLGIDNVI------FSPEFL  179 (432)
T ss_dssp             HTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCCCEE------ECCCCC
T ss_pred             HhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhccEe------ecCccC
Confidence            9999999999996532       112221  34556 9999999999999998899999988765332      466655


Q ss_pred             CCCCc---ccCCCceEE
Q 017490          318 DPNDP---ILKFKNVLI  331 (370)
Q Consensus       318 ~~~~p---L~~~~nvil  331 (370)
                      .+...   ++..++|++
T Consensus       180 ~~G~A~~~~l~p~rIvv  196 (432)
T 3pid_A          180 REGRALYDNLHPSRIVI  196 (432)
T ss_dssp             CTTSHHHHHHSCSCEEE
T ss_pred             CcchhhhcccCCceEEe
Confidence            44433   233445543

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=98.74  E-value=1.7e-08  Score=101.18  Aligned_cols=152  Identities=13%  Similarity=0.114  Sum_probs=91.3

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccc----c--cCCCCCHHHHHhcCC
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD----E--KGCHEDIFEFASKAD  251 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~l~ell~~aD  251 (370)
                      ++|+|||+|.||..+|..|...|++|+++|+++.+.......  ..+..+....+...    .  .....++++.++.||
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~--~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aD   78 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQG--KSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSD   78 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTT--CCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCC--CCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCC
Confidence            379999999999999999999999999999975432110000  00000000000000    0  112357888899999


Q ss_pred             EEEEeccCChh---------hhcccCHHHHhcCCC---CcEEEEcCCCcccC-HHHHHHHHHh--CCceEEEEe-cCCCC
Q 017490          252 VVVCCLSLNKQ---------TAGIVNKSFLSSMKK---GSLLVNIARGGLLD-YEAIAHYLEC--GHLGGLGID-VAWTE  315 (370)
Q Consensus       252 iV~l~lP~t~~---------t~~li~~~~l~~mk~---gailIN~sRg~~vd-~~aL~~aL~~--g~i~ga~lD-V~~~E  315 (370)
                      +|++|+|....         .+..+ ++..+.+++   |+++|+.|...+-. .+.+.+.+.+  |...+.... ++.+|
T Consensus        79 vviiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~~~g~~~~~~~~v~~~Pe  157 (436)
T 1mv8_A           79 VSFICVGTPSKKNGDLDLGYIETVC-REIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPE  157 (436)
T ss_dssp             EEEECCCCCBCTTSSBCCHHHHHHH-HHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECCC
T ss_pred             EEEEEcCCCcccCCCcchHHHHHHH-HHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHHhcCcccCCcEEEEECcc
Confidence            99999996544         33322 334456788   99999999877766 6777777876  322111112 24556


Q ss_pred             CCCCCCc---ccCCCceEEc
Q 017490          316 PFDPNDP---ILKFKNVLIT  332 (370)
Q Consensus       316 Pl~~~~p---L~~~~nvilT  332 (370)
                      .+.+...   +...+.+++.
T Consensus       158 ~~~~G~~~~~~~~~~~iv~G  177 (436)
T 1mv8_A          158 FLRESTAIKDYDFPPMTVIG  177 (436)
T ss_dssp             CCCTTSHHHHHHSCSCEEEE
T ss_pred             cccccccchhccCCCEEEEE
Confidence            6555443   2334455543

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=98.74  E-value=2.7e-09  Score=99.34  Aligned_cols=101  Identities=19%  Similarity=0.301  Sum_probs=74.6

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCCE-EEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhc
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASK  249 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~-V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~  249 (370)
                      +.+.+++|||||+|.||+.+|+.+...|++ |.++||+.....                 ......+  ...++++++++
T Consensus         6 ~~~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~-----------------~~~~~~g~~~~~~~~~~~~~   68 (266)
T 3d1l_A            6 RSIEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESAR-----------------ELAQKVEAEYTTDLAEVNPY   68 (266)
T ss_dssp             -CGGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHH-----------------HHHHHTTCEEESCGGGSCSC
T ss_pred             cCCCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHH-----------------HHHHHcCCceeCCHHHHhcC
Confidence            446678999999999999999999988998 899998754311                 1111111  23567788889


Q ss_pred             CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCH
Q 017490          250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDY  292 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~  292 (370)
                      +|+|++++|.. ..+.++ .+..+.+++|+++|+++.|-..+.
T Consensus        69 ~Dvvi~av~~~-~~~~v~-~~l~~~~~~~~ivv~~s~~~~~~~  109 (266)
T 3d1l_A           69 AKLYIVSLKDS-AFAELL-QGIVEGKREEALMVHTAGSIPMNV  109 (266)
T ss_dssp             CSEEEECCCHH-HHHHHH-HHHHTTCCTTCEEEECCTTSCGGG
T ss_pred             CCEEEEecCHH-HHHHHH-HHHHhhcCCCcEEEECCCCCchHH
Confidence            99999999965 445555 345567889999999999876543

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=98.68  E-value=1.6e-07  Score=86.95  Aligned_cols=100  Identities=13%  Similarity=0.245  Sum_probs=73.1

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCCEEEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVC  255 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~l  255 (370)
                      ++|||||+|.||+.+++.+...|.+|.+|||++....                 .+....+  ...+++++++++|+|++
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~-----------------~~~~~~g~~~~~~~~~~~~~~D~Vi~   66 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSK-----------------EIAEQLALPYAMSHQDLIDQVDLVIL   66 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHH-----------------HHHHHHTCCBCSSHHHHHHTCSEEEE
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHH-----------------HHHHHcCCEeeCCHHHHHhcCCEEEE
Confidence            4799999999999999999999999999998754311                 1111111  23578899999999999


Q ss_pred             eccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 017490          256 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG  302 (370)
Q Consensus       256 ~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g  302 (370)
                      ++| ....+     +.+..+++|.++|++..|--  .+.+.+.+..+
T Consensus        67 ~v~-~~~~~-----~v~~~l~~~~~vv~~~~~~~--~~~l~~~~~~~  105 (259)
T 2ahr_A           67 GIK-PQLFE-----TVLKPLHFKQPIISMAAGIS--LQRLATFVGQD  105 (259)
T ss_dssp             CSC-GGGHH-----HHHTTSCCCSCEEECCTTCC--HHHHHHHHCTT
T ss_pred             EeC-cHhHH-----HHHHHhccCCEEEEeCCCCC--HHHHHHhcCCC
Confidence            999 44433     44555678999999977643  45566666544

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=98.67  E-value=9.3e-09  Score=96.90  Aligned_cols=91  Identities=22%  Similarity=0.332  Sum_probs=69.2

Q ss_pred             ceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEEE
Q 017490          178 KTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVC  255 (370)
Q Consensus       178 ~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l  255 (370)
                      ++|||||+ |.||+.+|+.|...|++|++|||+.....                 .+ .+.+ ...+..+.+++||+|++
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~-----------------~~-~~~g~~~~~~~~~~~~aDvVi~   73 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRD-----------------RL-QGMGIPLTDGDGWIDEADVVVL   73 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHH-----------------HH-HHTTCCCCCSSGGGGTCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHH-----------------HH-HhcCCCcCCHHHHhcCCCEEEE
Confidence            58999999 99999999999999999999998754310                 00 0111 12356678899999999


Q ss_pred             eccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490          256 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       256 ~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~  288 (370)
                      ++|... ++.++ .+....+++++++|+++.|.
T Consensus        74 av~~~~-~~~v~-~~l~~~l~~~~ivv~~s~~~  104 (286)
T 3c24_A           74 ALPDNI-IEKVA-EDIVPRVRPGTIVLILDAAA  104 (286)
T ss_dssp             CSCHHH-HHHHH-HHHGGGSCTTCEEEESCSHH
T ss_pred             cCCchH-HHHHH-HHHHHhCCCCCEEEECCCCc
Confidence            999543 55555 34556789999999998886

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=98.65  E-value=2.6e-08  Score=89.91  Aligned_cols=80  Identities=16%  Similarity=0.286  Sum_probs=61.8

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCE
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  252 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  252 (370)
                      .++.+++|+|||+|.||+.+|+.|...|++|.++||+..                                  .+++||+
T Consensus        15 ~~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~----------------------------------~~~~aD~   60 (209)
T 2raf_A           15 LYFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ----------------------------------ATTLGEI   60 (209)
T ss_dssp             -----CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC----------------------------------CSSCCSE
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH----------------------------------HhccCCE
Confidence            467889999999999999999999999999999987521                                  2457999


Q ss_pred             EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcc
Q 017490          253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL  289 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~  289 (370)
                      |++++| ...++.++. +..+.++ ++++|++++|-.
T Consensus        61 vi~av~-~~~~~~v~~-~l~~~~~-~~~vi~~~~g~~   94 (209)
T 2raf_A           61 VIMAVP-YPALAALAK-QYATQLK-GKIVVDITNPLN   94 (209)
T ss_dssp             EEECSC-HHHHHHHHH-HTHHHHT-TSEEEECCCCBC
T ss_pred             EEEcCC-cHHHHHHHH-HHHHhcC-CCEEEEECCCCC
Confidence            999999 666666654 3344567 999999999764

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=98.65  E-value=1e-08  Score=92.95  Aligned_cols=95  Identities=22%  Similarity=0.240  Sum_probs=68.3

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEE
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  255 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  255 (370)
                      .+++|+|||+|.||+.+|+.+...|++|.++||+.....                 ..........+++++++++|+|++
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~-----------------~~~~~g~~~~~~~~~~~~~DvVi~   89 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTA-----------------RLFPSAAQVTFQEEAVSSPEVIFV   89 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHH-----------------HHSBTTSEEEEHHHHTTSCSEEEE
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-----------------HHHHcCCceecHHHHHhCCCEEEE
Confidence            457899999999999999999999999999998754310                 011110111267788999999999


Q ss_pred             eccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccC
Q 017490          256 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLD  291 (370)
Q Consensus       256 ~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd  291 (370)
                      ++|. ...+.++.   ++.+.+++++|++++|...+
T Consensus        90 av~~-~~~~~v~~---l~~~~~~~~vv~~s~g~~~~  121 (215)
T 2vns_A           90 AVFR-EHYSSLCS---LSDQLAGKILVDVSNPTEQE  121 (215)
T ss_dssp             CSCG-GGSGGGGG---GHHHHTTCEEEECCCCCHHH
T ss_pred             CCCh-HHHHHHHH---HHHhcCCCEEEEeCCCcccc
Confidence            9994 44555553   33334799999999997543

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=98.65  E-value=2.4e-08  Score=92.09  Aligned_cols=103  Identities=21%  Similarity=0.336  Sum_probs=73.7

Q ss_pred             ceEEEEecCchhHHHHHHhccCCC----EEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCC
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGV----KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKAD  251 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~----~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aD  251 (370)
                      ++|||||+|.||+.+++.+...|+    +|.+|||++.+..                 .+....+  ...+.++++++||
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~-----------------~~~~~~g~~~~~~~~e~~~~aD   65 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLK-----------------NASEKYGLTTTTDNNEVAKNAD   65 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHH-----------------HHHHHHCCEECSCHHHHHHHCS
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHH-----------------HHHHHhCCEEeCChHHHHHhCC
Confidence            589999999999999999999998    9999999765411                 1111112  2357889999999


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC  301 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~  301 (370)
                      +|++++|. ...+.++ ++....+++|.++|.+.-|  +..+.+.+.+..
T Consensus        66 vVilav~~-~~~~~v~-~~l~~~l~~~~~vvs~~~g--i~~~~l~~~~~~  111 (247)
T 3gt0_A           66 ILILSIKP-DLYASII-NEIKEIIKNDAIIVTIAAG--KSIESTENAFNK  111 (247)
T ss_dssp             EEEECSCT-TTHHHHC----CCSSCTTCEEEECSCC--SCHHHHHHHHCS
T ss_pred             EEEEEeCH-HHHHHHH-HHHHhhcCCCCEEEEecCC--CCHHHHHHHhCC
Confidence            99999974 3455555 3455568899999977655  345666666644

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=98.62  E-value=7.8e-08  Score=96.65  Aligned_cols=122  Identities=14%  Similarity=0.211  Sum_probs=82.8

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccc----cc--CCCCCHHHHHhcCC
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD----EK--GCHEDIFEFASKAD  251 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~l~ell~~aD  251 (370)
                      -+++|||+|.+|..+|..|...|++|++||+++.+...-......+ +..+ +.++..    ..  ....++.+.+++||
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~-~epg-l~~~~~~~~~~g~l~~ttd~~ea~~~aD   86 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPI-YEPG-LDALVASNVKAGRLSFTTDLAEGVKDAD   86 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSS-CCTT-HHHHHHHHHHTTCEEEESCHHHHHTTCS
T ss_pred             eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCc-cCCC-HHHHHHhhcccCCEEEECCHHHHHhcCC
Confidence            4799999999999999999999999999999876521100000000 0000 000000    00  12367889999999


Q ss_pred             EEEEeccCChh----------hhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 017490          252 VVVCCLSLNKQ----------TAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG  302 (370)
Q Consensus       252 iV~l~lP~t~~----------t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g  302 (370)
                      +|++|+|...+          .+..+ +...+.+++|.++|+.|.-++-..+.+.+.+.+.
T Consensus        87 vvii~Vptp~~~~~~~~Dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e~  146 (446)
T 4a7p_A           87 AVFIAVGTPSRRGDGHADLSYVFAAA-REIAENLTKPSVIVTKSTVPVGTGDEVERIIAEV  146 (446)
T ss_dssp             EEEECCCCCBCTTTCCBCTHHHHHHH-HHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCccccCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHh
Confidence            99999985432          23332 3566789999999999987777788888888764

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=98.58  E-value=7.4e-08  Score=96.97  Aligned_cols=121  Identities=12%  Similarity=0.194  Sum_probs=80.6

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccc----cc--CCCCCHHHHHhcCC
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD----EK--GCHEDIFEFASKAD  251 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~l~ell~~aD  251 (370)
                      ++|+|||+|.||..+|..|...|++|++||++..+...-......+ + +....+...    ..  ....++++.+++||
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i-~-e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aD   80 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPI-Y-EPGLEKMIARNVKAGRLRFGTEIEQAVPEAD   80 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCC-C-STTHHHHHHHHHHTTSEEEESCHHHHGGGCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcc-c-CCCHHHHHHhhcccCcEEEECCHHHHHhcCC
Confidence            5899999999999999999999999999999865311100000000 0 000000000    00  12357888999999


Q ss_pred             EEEEeccCCh---------hhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 017490          252 VVVCCLSLNK---------QTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC  301 (370)
Q Consensus       252 iV~l~lP~t~---------~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~  301 (370)
                      +|++|+|...         ..+..+ +...+.+++|.++|+.|.-++-..+.+.+.+.+
T Consensus        81 vViiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~  138 (450)
T 3gg2_A           81 IIFIAVGTPAGEDGSADMSYVLDAA-RSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQE  138 (450)
T ss_dssp             EEEECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             EEEEEcCCCcccCCCcChHHHHHHH-HHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHH
Confidence            9999999653         333333 345667999999999998777677777777765

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=98.56  E-value=9.2e-08  Score=91.89  Aligned_cols=105  Identities=21%  Similarity=0.265  Sum_probs=75.9

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCC----CEEEEEcCCCc--cccccccccchhhhccccccccccccC--CCCCHHHH
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFG----VKIIATKRSWA--SHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEF  246 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G----~~V~~~dr~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~el  246 (370)
                      +..++|||||+|.||..+|+.|...|    .+|.+|||+..  ...                 .+ .+.+  ...+..+.
T Consensus        20 ~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~-----------------~l-~~~G~~~~~~~~e~   81 (322)
T 2izz_A           20 FQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVS-----------------AL-RKMGVKLTPHNKET   81 (322)
T ss_dssp             --CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHH-----------------HH-HHHTCEEESCHHHH
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHH-----------------HH-HHcCCEEeCChHHH
Confidence            34468999999999999999999888    79999999764  210                 01 1111  12467888


Q ss_pred             HhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 017490          247 ASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC  301 (370)
Q Consensus       247 l~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~  301 (370)
                      +++||+|++++| ...++.++. +....++++.++|+++.|-  ..+.+.+.+.+
T Consensus        82 ~~~aDvVilav~-~~~~~~vl~-~l~~~l~~~~ivvs~s~gi--~~~~l~~~l~~  132 (322)
T 2izz_A           82 VQHSDVLFLAVK-PHIIPFILD-EIGADIEDRHIVVSCAAGV--TISSIEKKLSA  132 (322)
T ss_dssp             HHHCSEEEECSC-GGGHHHHHH-HHGGGCCTTCEEEECCTTC--CHHHHHHHHHT
T ss_pred             hccCCEEEEEeC-HHHHHHHHH-HHHhhcCCCCEEEEeCCCC--CHHHHHHHHhh
Confidence            999999999999 456666553 4455688999999998764  34566667764

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=98.56  E-value=3.8e-08  Score=98.50  Aligned_cols=112  Identities=13%  Similarity=0.183  Sum_probs=76.1

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHH--------
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF--------  246 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el--------  246 (370)
                      -+|.++.|||+|.+|..+|..|...|++|++||+++.+...-...              ... .....++++        
T Consensus         9 ~~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g--------------~~p-i~epgl~~ll~~~~~~g   73 (431)
T 3ojo_A            9 HHGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNG--------------QIS-IEEPGLQEVYEEVLSSG   73 (431)
T ss_dssp             ---CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTT--------------CCS-SCCTTHHHHHHHHHHTT
T ss_pred             ccCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCC--------------CCC-cCCCCHHHHHHhhcccC
Confidence            468899999999999999999999999999999986542110000              000 000112221        


Q ss_pred             -------HhcCCEEEEeccCChhh--------hcccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 017490          247 -------ASKADVVVCCLSLNKQT--------AGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC  301 (370)
Q Consensus       247 -------l~~aDiV~l~lP~t~~t--------~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~  301 (370)
                             +++||+|++|+|.....        ..+..  +...+.|++|+++|+.|.-++-..+.+.+.+.+
T Consensus        74 ~l~~ttd~~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~e  145 (431)
T 3ojo_A           74 KLKVSTTPEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVIE  145 (431)
T ss_dssp             CEEEESSCCCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHHHH
T ss_pred             ceEEeCchhhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHHHH
Confidence                   35799999999965422        22332  346677999999999999988888888876544

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=98.56  E-value=1.9e-07  Score=88.64  Aligned_cols=133  Identities=14%  Similarity=0.130  Sum_probs=77.5

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccc-cchhh--hccccccc----------cccccCCCCCHH
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSALA--VKNGIIDD----------LVDEKGCHEDIF  244 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~-~~~~~--~~~~~~~~----------~~~~~~~~~~l~  244 (370)
                      ++|+|||+|.||..+|..+...|++|++||++.......... ...+.  ...+....          .........+++
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~   95 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA   95 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCHH
Confidence            589999999999999999998999999999975432110000 00000  00000000          000001135777


Q ss_pred             HHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCC
Q 017490          245 EFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW  313 (370)
Q Consensus       245 ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~  313 (370)
                      +.+++||+|++++|...+...-+-++..+.++++++++..+.|  +....+.+.+... -..+++..+.
T Consensus        96 ~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~--i~~~~l~~~~~~~-~~~~g~h~~~  161 (302)
T 1f0y_A           96 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSS--LQITSIANATTRQ-DRFAGLHFFN  161 (302)
T ss_dssp             HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSS--SCHHHHHTTSSCG-GGEEEEEECS
T ss_pred             HhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCC--CCHHHHHHhcCCc-ccEEEEecCC
Confidence            7899999999999976554332323445568899988854444  3344555544321 1234555554

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=98.56  E-value=2.6e-07  Score=87.11  Aligned_cols=104  Identities=22%  Similarity=0.252  Sum_probs=75.8

Q ss_pred             CceEEEEecCchhHHHHHHhccCCC---EEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCC
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGV---KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKAD  251 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~---~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aD  251 (370)
                      .++|||||+|+||..+++.+...|+   +|.+|||+..+..                 .+...++  ...+..+.+++||
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~-----------------~l~~~~gi~~~~~~~~~~~~aD   65 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLD-----------------FFKEKCGVHTTQDNRQGALNAD   65 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHH-----------------HHHHTTCCEEESCHHHHHSSCS
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHH-----------------HHHHHcCCEEeCChHHHHhcCC
Confidence            4689999999999999999998898   8999999865421                 1111112  2357889999999


Q ss_pred             EEEEeccCChhhhcccCHHHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHh
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSS-MKKGSLLVNIARGGLLDYEAIAHYLEC  301 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~-mk~gailIN~sRg~~vd~~aL~~aL~~  301 (370)
                      +|++++|. ...+.++. +.-.. +++++++|.++-|  +..+.|.+.+..
T Consensus        66 vVilav~p-~~~~~vl~-~l~~~~l~~~~iiiS~~ag--i~~~~l~~~l~~  112 (280)
T 3tri_A           66 VVVLAVKP-HQIKMVCE-ELKDILSETKILVISLAVG--VTTPLIEKWLGK  112 (280)
T ss_dssp             EEEECSCG-GGHHHHHH-HHHHHHHTTTCEEEECCTT--CCHHHHHHHHTC
T ss_pred             eEEEEeCH-HHHHHHHH-HHHhhccCCCeEEEEecCC--CCHHHHHHHcCC
Confidence            99999984 44455542 33334 6888899988766  446777777765

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=98.55  E-value=1.6e-07  Score=95.36  Aligned_cols=150  Identities=13%  Similarity=0.134  Sum_probs=89.9

Q ss_pred             ceEEEEecCchhHHHHHHhccC--CCEEEEEcCCCccccccccccchhhhcccccccccc-----ccCCCCCHHHHHhcC
Q 017490          178 KTVFILGFGNIGVELAKRLRPF--GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-----EKGCHEDIFEFASKA  250 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~--G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~ell~~a  250 (370)
                      ++|+|||+|.||..+|..|...  |++|++||++..+.......  ..+..+..+.+...     ......++.+.+++|
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g--~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~a   87 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSD--KLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEA   87 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSS--SCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCC--CCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcC
Confidence            5899999999999999999876  79999999876542110000  00000000000000     001124677888999


Q ss_pred             CEEEEeccCChh--------------hhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh-CCceEEEEe---cC
Q 017490          251 DVVVCCLSLNKQ--------------TAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC-GHLGGLGID---VA  312 (370)
Q Consensus       251 DiV~l~lP~t~~--------------t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~-g~i~ga~lD---V~  312 (370)
                      |+|++|+|....              ++..+ +...+.+++|+++|+.|.-++-..+.+.+.+.+ ..+. .+.|   ++
T Consensus        88 Dvvii~Vptp~~~~g~~~~~~~dl~~v~~~~-~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~~~~~~-~~~d~~v~~  165 (481)
T 2o3j_A           88 DLIFISVNTPTKMYGRGKGMAPDLKYVESVS-RTIAQYAGGPKIVVEKSTVPVKAAESIGCILREAQKNN-ENLKFQVLS  165 (481)
T ss_dssp             SEEEECCCCCBCCSSTTTTTSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHTC-----CCEEEEE
T ss_pred             CEEEEecCCccccccccccCCCcHHHHHHHH-HHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHHhhCcC-cCCceEEEe
Confidence            999999985432              22222 345667999999999998777777788888887 4321 1222   34


Q ss_pred             CCCCCCCCCc---ccCCCceEE
Q 017490          313 WTEPFDPNDP---ILKFKNVLI  331 (370)
Q Consensus       313 ~~EPl~~~~p---L~~~~nvil  331 (370)
                      .+|.+.+...   +...+++++
T Consensus       166 ~Pe~~~~G~a~~~~~~~~~ivi  187 (481)
T 2o3j_A          166 NPEFLAEGTAMKDLANPDRVLI  187 (481)
T ss_dssp             CCCCCCTTCHHHHHHSCSCEEE
T ss_pred             CcccccccchhhcccCCCEEEE
Confidence            5555444442   344456654

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=98.52  E-value=6.6e-08  Score=92.65  Aligned_cols=110  Identities=16%  Similarity=0.133  Sum_probs=76.8

Q ss_pred             ccCceEEEEecCchhHHHHHHhcc-CCC-EEEEEcCCCccccccccccchhhhccccccccccc----cCCCCCHHHHHh
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE----KGCHEDIFEFAS  248 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~-~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~ell~  248 (370)
                      ..+++|||||+|.||+.+++.+.. +|+ +|.+|||+..+..                 .+...    .....+++++++
T Consensus       133 ~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~-----------------~l~~~~~~~~~~~~~~~e~v~  195 (312)
T 2i99_A          133 PSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAE-----------------KFADTVQGEVRVCSSVQEAVA  195 (312)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHH-----------------HHHHHSSSCCEECSSHHHHHT
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHH-----------------HHHHHhhCCeEEeCCHHHHHh
Confidence            356799999999999999999865 487 8999999865421                 11111    112468899999


Q ss_pred             cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEe
Q 017490          249 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGID  310 (370)
Q Consensus       249 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lD  310 (370)
                      ++|+|++|+|.   ++.++..   +.+++|.++++++....-. ..+.+.+.+...  ..+|
T Consensus       196 ~aDiVi~atp~---~~~v~~~---~~l~~g~~vi~~g~~~p~~-~el~~~~~~~g~--~~vD  248 (312)
T 2i99_A          196 GADVIITVTLA---TEPILFG---EWVKPGAHINAVGASRPDW-RELDDELMKEAV--LYVD  248 (312)
T ss_dssp             TCSEEEECCCC---SSCCBCG---GGSCTTCEEEECCCCSTTC-CSBCHHHHHHSE--EEES
T ss_pred             cCCEEEEEeCC---CCcccCH---HHcCCCcEEEeCCCCCCCc-eeccHHHHhcCE--EEEC
Confidence            99999999984   3566664   4689999999998766532 444444433322  3567

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=98.48  E-value=3.3e-07  Score=90.85  Aligned_cols=144  Identities=11%  Similarity=0.101  Sum_probs=87.6

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccc----ccCCCCCHHHHHhcCCEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD----EKGCHEDIFEFASKADVV  253 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~ell~~aDiV  253 (370)
                      ++|+|||+|.||..+|..|.. |++|+++|++..+.......  ..+..+....+...    ......++.+.++.||+|
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~--~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvv   77 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNG--LSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELV   77 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTT--CCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcC--CCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEE
Confidence            379999999999999999999 99999999975431110000  00000000000000    001124677888999999


Q ss_pred             EEeccCCh----------hhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCc-
Q 017490          254 VCCLSLNK----------QTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDP-  322 (370)
Q Consensus       254 ~l~lP~t~----------~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~p-  322 (370)
                      ++|+|...          .++..+ +...+ +++|+++|+.|.-++-..+.+.+.+.+..+.      +.+|-+.+... 
T Consensus        78 iiavpt~~~~~~~~~dl~~v~~v~-~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~~v~------~~Pe~~~~G~a~  149 (402)
T 1dlj_A           78 IIATPTNYNSRINYFDTQHVETVI-KEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTDRII------FSPEFLRESKAL  149 (402)
T ss_dssp             EECCCCCEETTTTEECCHHHHHHH-HHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCSCEE------ECCCCCCTTSTT
T ss_pred             EEecCCCcccCCCCccHHHHHHHH-HHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCCeEE------ECCccccCcchh
Confidence            99999653          233333 23455 8999999998887777788888877654222      33444333332 


Q ss_pred             --ccCCCceEEc
Q 017490          323 --ILKFKNVLIT  332 (370)
Q Consensus       323 --L~~~~nvilT  332 (370)
                        +...+++++-
T Consensus       150 ~~~~~~~riviG  161 (402)
T 1dlj_A          150 YDNLYPSRIIVS  161 (402)
T ss_dssp             HHHHSCSCEEEE
T ss_pred             hcccCCCEEEEe
Confidence              3445566654

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=98.47  E-value=4.6e-08  Score=87.66  Aligned_cols=123  Identities=19%  Similarity=0.192  Sum_probs=80.0

Q ss_pred             ceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCCCCHHHHHhcCCEEEE
Q 017490          178 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVVC  255 (370)
Q Consensus       178 ~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~l  255 (370)
                      ++|+|+| .|.||+.+++.|...|++|.++||+.........   .+    +   .... ......++++.++++|+|++
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~---~~----~---~~~~~~~~~~~~~~~~~~~~D~Vi~   70 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAA---EY----R---RIAGDASITGMKNEDAAEACDIAVL   70 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHH---HH----H---HHHSSCCEEEEEHHHHHHHCSEEEE
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---Hh----c---cccccCCCChhhHHHHHhcCCEEEE
Confidence            3799999 9999999999999999999999987543110000   00    0   0000 00012467888999999999


Q ss_pred             eccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccC------------HHHHHHHHHhCCceEEEEecCCCCCC
Q 017490          256 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLD------------YEAIAHYLECGHLGGLGIDVAWTEPF  317 (370)
Q Consensus       256 ~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd------------~~aL~~aL~~g~i~ga~lDV~~~EPl  317 (370)
                      ++|. ..++.++. +..+.++ +.++|+++.|--.+            .+.+.+.+..    ...++++.+.|.
T Consensus        71 ~~~~-~~~~~~~~-~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~----~~~v~~~~~~~~  137 (212)
T 1jay_A           71 TIPW-EHAIDTAR-DLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLES----EKVVSALHTIPA  137 (212)
T ss_dssp             CSCH-HHHHHHHH-HTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTC----SCEEECCTTCCH
T ss_pred             eCCh-hhHHHHHH-HHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCC----CeEEEEccchHH
Confidence            9993 44444443 2333454 89999999875432            5667776652    235788877664

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=98.46  E-value=1.6e-07  Score=86.84  Aligned_cols=100  Identities=22%  Similarity=0.353  Sum_probs=68.4

Q ss_pred             ceEEEEecCchhHHHHHHhccCC-CEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCCEEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVV  254 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~  254 (370)
                      ++|||||+|.||+.+|+.|...| ++|.+|||++....                 .+...++  ...++++++ ++|+|+
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~-----------------~~~~~~g~~~~~~~~~~~-~~D~vi   62 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRE-----------------RLEKELGVETSATLPELH-SDDVLI   62 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHH-----------------HHHHHTCCEEESSCCCCC-TTSEEE
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHH-----------------HHHHhcCCEEeCCHHHHh-cCCEEE
Confidence            37999999999999999999889 99999999754311                 0111111  123455667 899999


Q ss_pred             EeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 017490          255 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG  302 (370)
Q Consensus       255 l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g  302 (370)
                      +++| ....+.++.  .+.. + +.++|+++.|--  .+.|.+.+..+
T Consensus        63 ~~v~-~~~~~~v~~--~l~~-~-~~ivv~~~~g~~--~~~l~~~~~~~  103 (263)
T 1yqg_A           63 LAVK-PQDMEAACK--NIRT-N-GALVLSVAAGLS--VGTLSRYLGGT  103 (263)
T ss_dssp             ECSC-HHHHHHHHT--TCCC-T-TCEEEECCTTCC--HHHHHHHTTSC
T ss_pred             EEeC-chhHHHHHH--Hhcc-C-CCEEEEecCCCC--HHHHHHHcCCC
Confidence            9999 555554443  1222 4 899999966533  36677777653

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=98.42  E-value=3.4e-07  Score=86.39  Aligned_cols=111  Identities=14%  Similarity=0.135  Sum_probs=76.1

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhc
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASK  249 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~  249 (370)
                      ..+.|+++.|+|.|.+|++++..|...|+ +|.+++|+..+..                 ++.....  ..+++.+.+.+
T Consensus       113 ~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~-----------------~la~~~~~~~~~~~~~~~~~  175 (277)
T 3don_A          113 EGIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFN-----------------NWSLNINKINLSHAESHLDE  175 (277)
T ss_dssp             TTGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGT-----------------TCCSCCEEECHHHHHHTGGG
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHH-----------------HHHHhcccccHhhHHHHhcC
Confidence            45789999999999999999999999999 8999999865421                 1111111  23456677889


Q ss_pred             CCEEEEeccCC--hhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          250 ADVVVCCLSLN--KQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       250 aDiV~l~lP~t--~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      +|+|++++|..  +.....++   .+.++++.+++|+...+.. + .|++..++..+.
T Consensus       176 aDiVInaTp~Gm~~~~~~~l~---~~~l~~~~~V~D~vY~P~~-T-~ll~~A~~~G~~  228 (277)
T 3don_A          176 FDIIINTTPAGMNGNTDSVIS---LNRLASHTLVSDIVYNPYK-T-PILIEAEQRGNP  228 (277)
T ss_dssp             CSEEEECCC-------CCSSC---CTTCCSSCEEEESCCSSSS-C-HHHHHHHHTTCC
T ss_pred             CCEEEECccCCCCCCCcCCCC---HHHcCCCCEEEEecCCCCC-C-HHHHHHHHCcCE
Confidence            99999999864  23222233   3557899999999877543 3 355555554443

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=98.42  E-value=3.1e-07  Score=93.10  Aligned_cols=140  Identities=11%  Similarity=0.094  Sum_probs=85.2

Q ss_pred             CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccc------ccCCCCCHHHHHhcC
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD------EKGCHEDIFEFASKA  250 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~ell~~a  250 (370)
                      ..+|+|||+|.||..+|..|...|++|++||++..+...-...  ..+.......+...      ......++++.++.|
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~--~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~a   85 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNG--GVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHG   85 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTT--CCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHC
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCC--CCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcC
Confidence            3689999999999999999999999999999975431110000  00000000000000      001235777889999


Q ss_pred             CEEEEeccCC---------hhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh----CC--ceEEEEecCCCC
Q 017490          251 DVVVCCLSLN---------KQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC----GH--LGGLGIDVAWTE  315 (370)
Q Consensus       251 DiV~l~lP~t---------~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~----g~--i~ga~lDV~~~E  315 (370)
                      |+|++|+|..         ..++..+ +...+.+++|+++|+.|.-++-..+.+.+.+.+    |.  +.+ .+ ++.+|
T Consensus        86 DvviiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~~~~~~g~~~~~~-~v-~~~Pe  162 (478)
T 2y0c_A           86 DVQFIAVGTPPDEDGSADLQYVLAAA-RNIGRYMTGFKVIVDKSTVPVGTAERVRAAVAEELAKRGGDQMF-SV-VSNPE  162 (478)
T ss_dssp             SEEEECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHTTCCCCE-EE-EECCC
T ss_pred             CEEEEEeCCCcccCCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCcCCCchHHHHHHHHHHhcCCCCCccE-EE-EEChh
Confidence            9999999953         2333333 345567999999999996555555666666554    32  221 11 45666


Q ss_pred             CCCCCC
Q 017490          316 PFDPND  321 (370)
Q Consensus       316 Pl~~~~  321 (370)
                      .+.+..
T Consensus       163 ~~~eG~  168 (478)
T 2y0c_A          163 FLKEGA  168 (478)
T ss_dssp             CCCTTC
T ss_pred             hhcccc
Confidence            655444

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=98.41  E-value=3.4e-07  Score=88.31  Aligned_cols=119  Identities=20%  Similarity=0.164  Sum_probs=74.7

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccccc-CCCCCHHHHHhcCCEEEEe
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-GCHEDIFEFASKADVVVCC  256 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ell~~aDiV~l~  256 (370)
                      ++|+|||+|.||..+|..|...|++|.++||++......... ..+....... ...... ....+++++++.+|+|+++
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~vi~~   82 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDR-GAIIAEGPGL-AGTAHPDLLTSDIGLAVKDADVILIV   82 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH-TSEEEESSSC-CEEECCSEEESCHHHHHTTCSEEEEC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhc-CCeEEecccc-ccccccceecCCHHHHHhcCCEEEEe
Confidence            589999999999999999999999999999875431100000 0000000000 000000 0135788888999999999


Q ss_pred             ccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 017490          257 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC  301 (370)
Q Consensus       257 lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~  301 (370)
                      +|... ++.++ ++..+.+++++++|++ .|.......+.+.+.+
T Consensus        83 v~~~~-~~~~~-~~l~~~l~~~~~vv~~-~~~~~~~~~~~~~l~~  124 (359)
T 1bg6_A           83 VPAIH-HASIA-ANIASYISEGQLIILN-PGATGGALEFRKILRE  124 (359)
T ss_dssp             SCGGG-HHHHH-HHHGGGCCTTCEEEES-SCCSSHHHHHHHHHHH
T ss_pred             CCchH-HHHHH-HHHHHhCCCCCEEEEc-CCCchHHHHHHHHHHh
Confidence            99654 44444 4456678999999999 4422344446666655

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=98.41  E-value=3.3e-07  Score=92.99  Aligned_cols=135  Identities=19%  Similarity=0.161  Sum_probs=82.0

Q ss_pred             CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccc-cchhh--hccccccc-----cccccCCCCCHHHHHh
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSALA--VKNGIIDD-----LVDEKGCHEDIFEFAS  248 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~-~~~~~--~~~~~~~~-----~~~~~~~~~~l~ell~  248 (370)
                      -++|||||+|.||..+|..+...|++|++||++.......... ...+.  ...+....     .........+++ .++
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~   83 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-ALA   83 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-GGG
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-Hhc
Confidence            3589999999999999999999999999999986542110000 00000  00000000     000000124554 588


Q ss_pred             cCCEEEEeccCChhhhcccCHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCC
Q 017490          249 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLL-VNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEP  316 (370)
Q Consensus       249 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~gail-IN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP  316 (370)
                      +||+|+.++|...+.+.-+-++..+.++++++| .|+|.-+   ...+.+.+.. .-..+++..|.+-|
T Consensus        84 ~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~---i~~ia~~~~~-p~~~ig~hf~~Pa~  148 (483)
T 3mog_A           84 AADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSIS---ITAIAAEIKN-PERVAGLHFFNPAP  148 (483)
T ss_dssp             GCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSC---HHHHTTTSSS-GGGEEEEEECSSTT
T ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCC---HHHHHHHccC-ccceEEeeecChhh
Confidence            999999999987665543334566778999999 5777544   3455555532 33456777776444

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=98.40  E-value=2.4e-07  Score=93.79  Aligned_cols=120  Identities=21%  Similarity=0.313  Sum_probs=77.7

Q ss_pred             ceEEEEecCchhHHHHHHhccC-CC-EEEEEcCCCc----cccccccccchhh-hccccccccccc---cC---CCCCHH
Q 017490          178 KTVFILGFGNIGVELAKRLRPF-GV-KIIATKRSWA----SHSQVSCQSSALA-VKNGIIDDLVDE---KG---CHEDIF  244 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~-G~-~V~~~dr~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~---~~---~~~~l~  244 (370)
                      ++|+|||+|.+|..+|..|... |+ +|++||++..    +...-......+. +..+ ..++..+   .+   ...+ .
T Consensus        19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~g-l~~l~~~~~~~g~l~~ttd-~   96 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPG-LEELIGKVVKAGKFECTPD-F   96 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGG-HHHHHHHHHHTTCEEEESC-G
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCC-HHHHHHhhcccCCeEEeCc-H
Confidence            5899999999999999999999 99 9999999876    2100000000000 0000 0000000   11   1234 5


Q ss_pred             HHHhcCCEEEEeccCCh--------hhhcccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 017490          245 EFASKADVVVCCLSLNK--------QTAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYL  299 (370)
Q Consensus       245 ell~~aDiV~l~lP~t~--------~t~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL  299 (370)
                      +.+++||+|++|+|...        ++..+..  +...+.+++|+++|+.|.-++-..+.+.+.+
T Consensus        97 ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~~i  161 (478)
T 3g79_A           97 SRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQI  161 (478)
T ss_dssp             GGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHHHH
T ss_pred             HHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHHHH
Confidence            78899999999999652        3333332  3566789999999999998888777777643

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=98.38  E-value=1.5e-06  Score=80.20  Aligned_cols=99  Identities=17%  Similarity=0.321  Sum_probs=67.8

Q ss_pred             CceEEEEecCchhHHHHHHhccCC----CEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCE
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFG----VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  252 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G----~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  252 (370)
                      .++|||||+|.||+.+|+.|...|    .+|.+|||+....                  . ..   ...+.++.++++|+
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~~------------------g-~~---~~~~~~~~~~~~D~   61 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKNT------------------T-LN---YMSSNEELARHCDI   61 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCSS------------------S-SE---ECSCHHHHHHHCSE
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCcccC------------------c-eE---EeCCHHHHHhcCCE
Confidence            468999999999999999998888    6899999875320                  0 00   12467888999999


Q ss_pred             EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 017490          253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG  302 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g  302 (370)
                      |++++|. ..++.++. +....++ +.++|....|  ++.+.+.+.+..+
T Consensus        62 vi~~v~~-~~~~~v~~-~l~~~l~-~~~vv~~~~g--i~~~~l~~~~~~~  106 (262)
T 2rcy_A           62 IVCAVKP-DIAGSVLN-NIKPYLS-SKLLISICGG--LNIGKLEEMVGSE  106 (262)
T ss_dssp             EEECSCT-TTHHHHHH-HSGGGCT-TCEEEECCSS--CCHHHHHHHHCTT
T ss_pred             EEEEeCH-HHHHHHHH-HHHHhcC-CCEEEEECCC--CCHHHHHHHhCCC
Confidence            9999994 45555543 3344564 4555554444  3445666666543

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=98.38  E-value=7.1e-07  Score=81.99  Aligned_cols=70  Identities=14%  Similarity=0.280  Sum_probs=56.7

Q ss_pred             CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEe
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  256 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  256 (370)
                      -++|||||+|.||.++|+.|+..|++|.+|++.  .                                + +.+||  +++
T Consensus         6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~--~--------------------------------~-~~~aD--ila   48 (232)
T 3dfu_A            6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP--E--------------------------------D-IRDFE--LVV   48 (232)
T ss_dssp             CCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG--G--------------------------------G-GGGCS--EEE
T ss_pred             CcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH--H--------------------------------H-hccCC--EEE
Confidence            368999999999999999999999999999862  0                                1 35789  888


Q ss_pred             ccCChhhhcccCHHHHhcCCCCcEEEEcC
Q 017490          257 LSLNKQTAGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       257 lP~t~~t~~li~~~~l~~mk~gailIN~s  285 (370)
                      +|.. ....++ .+....+++|+++++++
T Consensus        49 vP~~-ai~~vl-~~l~~~l~~g~ivvd~s   75 (232)
T 3dfu_A           49 IDAH-GVEGYV-EKLSAFARRGQMFLHTS   75 (232)
T ss_dssp             ECSS-CHHHHH-HHHHTTCCTTCEEEECC
T ss_pred             EcHH-HHHHHH-HHHHHhcCCCCEEEEEC
Confidence            9975 566655 45566789999999985

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=98.37  E-value=8.3e-07  Score=83.72  Aligned_cols=129  Identities=19%  Similarity=0.355  Sum_probs=91.3

Q ss_pred             cccccCceEEEEecCc-hhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490          172 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  250 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~-IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  250 (370)
                      +.+++|+++.|||.|. +|+.+|+.|...|++|..++++.                              .++.+.+++|
T Consensus       154 ~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t------------------------------~~L~~~~~~A  203 (288)
T 1b0a_A          154 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT------------------------------KNLRHHVENA  203 (288)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC------------------------------SCHHHHHHHC
T ss_pred             CCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc------------------------------hhHHHHhccC
Confidence            4679999999999997 59999999999999999987531                              3688999999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceE
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL  330 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi  330 (370)
                      |+|+.+++..    +++.+++   +|||+++||+|.-.+-|          |++   .-||-..+       .... --.
T Consensus       204 DIVI~Avg~p----~lI~~~~---vk~GavVIDVgi~r~~~----------g~l---~GDVdf~~-------v~~~-a~~  255 (288)
T 1b0a_A          204 DLLIVAVGKP----GFIPGDW---IKEGAIVIDVGINRLEN----------GKV---VGDVVFED-------AAKR-ASY  255 (288)
T ss_dssp             SEEEECSCCT----TCBCTTT---SCTTCEEEECCCEECTT----------SCE---ECSBCHHH-------HHHH-CSE
T ss_pred             CEEEECCCCc----CcCCHHH---cCCCcEEEEccCCccCC----------CCc---cCCcCHHH-------Hhhh-ccE
Confidence            9999999833    3677766   49999999999866432          443   44663211       0111 235


Q ss_pred             EccCCCCccHHHHHHHHHHHHHHHHHHH
Q 017490          331 ITPHVGGVTEHSYRSMAKVVGDVALQLH  358 (370)
Q Consensus       331 lTPHia~~t~~~~~~~~~~~~~ni~~~~  358 (370)
                      +||==||.-+-+..-+.+.+++..++.+
T Consensus       256 iTPVPGGVGpmT~a~Ll~Ntv~aa~~~~  283 (288)
T 1b0a_A          256 ITPVPGGVGPMTVATLIENTLQACVEYH  283 (288)
T ss_dssp             ECCSSSSSHHHHHHHHHHHHHHHHHHTT
T ss_pred             ecCCCCCccHHHHHHHHHHHHHHHHHhh
Confidence            8887677655555555555555544433

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=98.37  E-value=9.4e-07  Score=82.89  Aligned_cols=122  Identities=19%  Similarity=0.246  Sum_probs=86.3

Q ss_pred             ccCceEEEEecCc-hhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEE
Q 017490          175 LLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  253 (370)
Q Consensus       175 l~g~tvGIiGlG~-IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  253 (370)
                      ++|+++.|||.|. +|+.+|+.|...|++|++++++.                              .++++.+++||+|
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t------------------------------~~L~~~~~~ADIV  197 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKT------------------------------KDIGSMTRSSKIV  197 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------------------------SCHHHHHHHSSEE
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCc------------------------------ccHHHhhccCCEE
Confidence            8999999999986 79999999999999999987531                              3688999999999


Q ss_pred             EEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceEEcc
Q 017490          254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITP  333 (370)
Q Consensus       254 ~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTP  333 (370)
                      +.+++.    .+++.++.   +|+|+++||++.-. .|          |+   ..-||...+       ... .--.+||
T Consensus       198 I~Avg~----p~~I~~~~---vk~GavVIDvgi~~-~~----------gk---l~GDVdf~~-------v~~-~a~~iTP  248 (276)
T 3ngx_A          198 VVAVGR----PGFLNREM---VTPGSVVIDVGINY-VN----------DK---VVGDANFED-------LSE-YVEAITP  248 (276)
T ss_dssp             EECSSC----TTCBCGGG---CCTTCEEEECCCEE-ET----------TE---EECSBCHHH-------HHT-TSSEECC
T ss_pred             EECCCC----CccccHhh---ccCCcEEEEeccCc-cC----------Cc---eeccccHHH-------Hhh-hceEeCC
Confidence            999984    34677765   59999999999765 22          33   344764221       000 1246888


Q ss_pred             CCCCccHHHHHHHHHHHHHHHH
Q 017490          334 HVGGVTEHSYRSMAKVVGDVAL  355 (370)
Q Consensus       334 Hia~~t~~~~~~~~~~~~~ni~  355 (370)
                      -=||.-+-+..-+.+.+++..+
T Consensus       249 VPGGVGpmT~a~Ll~n~v~a~~  270 (276)
T 3ngx_A          249 VPGGVGPITATNILENVVKAAE  270 (276)
T ss_dssp             TTTSSHHHHHHHHHHHHHHHHH
T ss_pred             CCCcChHHHHHHHHHHHHHHHH
Confidence            6667655544444444444333

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=98.37  E-value=6.1e-07  Score=83.53  Aligned_cols=103  Identities=18%  Similarity=0.162  Sum_probs=75.9

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCC
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKAD  251 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aD  251 (370)
                      ++| +++|+|.|.+|++++..|...|+ +|.++||+..+..                 ++..+.+  ...++.+.++++|
T Consensus       107 ~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~-----------------~la~~~~~~~~~~~~~~~~~aD  168 (253)
T 3u62_A          107 VKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAK-----------------ALDFPVKIFSLDQLDEVVKKAK  168 (253)
T ss_dssp             CCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHH-----------------TCCSSCEEEEGGGHHHHHHTCS
T ss_pred             CCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH-----------------HHHHHcccCCHHHHHhhhcCCC
Confidence            578 99999999999999999999999 8999999865421                 1122111  2356778899999


Q ss_pred             EEEEeccCC--hhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 017490          252 VVVCCLSLN--KQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG  302 (370)
Q Consensus       252 iV~l~lP~t--~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g  302 (370)
                      +|++++|..  ++ ...++.+.   ++++.+++++..+   .++-|.++.+.|
T Consensus       169 iVInatp~gm~p~-~~~i~~~~---l~~~~~V~Divy~---~T~ll~~A~~~G  214 (253)
T 3u62_A          169 SLFNTTSVGMKGE-ELPVSDDS---LKNLSLVYDVIYF---DTPLVVKARKLG  214 (253)
T ss_dssp             EEEECSSTTTTSC-CCSCCHHH---HTTCSEEEECSSS---CCHHHHHHHHHT
T ss_pred             EEEECCCCCCCCC-CCCCCHHH---hCcCCEEEEeeCC---CcHHHHHHHHCC
Confidence            999999863  22 22345444   5789999999988   566666666665

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=98.37  E-value=9.3e-07  Score=83.34  Aligned_cols=122  Identities=23%  Similarity=0.344  Sum_probs=87.3

Q ss_pred             cccccCceEEEEecCc-hhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490          172 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  250 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~-IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  250 (370)
                      +.+++||++.|||.|. +|+.+|..|...|++|.+.+++.                              .++++.+++|
T Consensus       155 ~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t------------------------------~~L~~~~~~A  204 (285)
T 3p2o_A          155 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT------------------------------KDLSLYTRQA  204 (285)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------------------------SCHHHHHTTC
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc------------------------------hhHHHHhhcC
Confidence            4679999999999988 69999999999999999987541                              3688899999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceE
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL  330 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi  330 (370)
                      |+|+.+++.    .++|.+++   +|||+++||++.-.+-|          |++   .-||...+=        .-.--.
T Consensus       205 DIVI~Avg~----p~~I~~~~---vk~GavVIDVgi~~~~~----------gkl---~GDVdf~~v--------~~~a~~  256 (285)
T 3p2o_A          205 DLIIVAAGC----VNLLRSDM---VKEGVIVVDVGINRLES----------GKI---VGDVDFEEV--------SKKSSY  256 (285)
T ss_dssp             SEEEECSSC----TTCBCGGG---SCTTEEEEECCCEECTT----------SCE---ECSBCHHHH--------TTTEEE
T ss_pred             CEEEECCCC----CCcCCHHH---cCCCeEEEEeccCcccC----------CCE---eccccHHHH--------HhhheE
Confidence            999999983    34677765   59999999999766432          544   456642210        011246


Q ss_pred             EccCCCCccHHHHHHHHHHHH
Q 017490          331 ITPHVGGVTEHSYRSMAKVVG  351 (370)
Q Consensus       331 lTPHia~~t~~~~~~~~~~~~  351 (370)
                      +||==||.-+-+..-+.+.++
T Consensus       257 iTPVPGGVGpmT~a~Ll~ntv  277 (285)
T 3p2o_A          257 ITPVPGGVGPMTIAMLLENTV  277 (285)
T ss_dssp             ECCSSSSHHHHHHHHHHHHHH
T ss_pred             eCCCCCcCcHHHHHHHHHHHH
Confidence            899767765544433333333

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=98.35  E-value=1.1e-06  Score=82.82  Aligned_cols=122  Identities=20%  Similarity=0.321  Sum_probs=86.7

Q ss_pred             cccccCceEEEEecCc-hhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490          172 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  250 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~-IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  250 (370)
                      +.+++|+++.|||.|. +|+.+|..|...|++|.+.+++.                              .++++.+++|
T Consensus       156 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t------------------------------~~L~~~~~~A  205 (285)
T 3l07_A          156 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT------------------------------TDLKSHTTKA  205 (285)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------------------------SSHHHHHTTC
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc------------------------------hhHHHhcccC
Confidence            4579999999999988 69999999999999999987531                              3688899999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceE
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL  330 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi  330 (370)
                      |+|+.+++.    .++|.++.   +|||+++||++.-.+ +          |+   ..-||...+=       .. .--.
T Consensus       206 DIVI~Avg~----p~~I~~~~---vk~GavVIDvgi~~~-~----------g~---l~GDVdf~~v-------~~-~a~~  256 (285)
T 3l07_A          206 DILIVAVGK----PNFITADM---VKEGAVVIDVGINHV-D----------GK---IVGDVDFAAV-------KD-KVAA  256 (285)
T ss_dssp             SEEEECCCC----TTCBCGGG---SCTTCEEEECCCEEE-T----------TE---EECSBCHHHH-------TT-TCSE
T ss_pred             CEEEECCCC----CCCCCHHH---cCCCcEEEEecccCc-C----------Cc---eecCccHHHH-------Hh-hheE
Confidence            999999983    34677765   599999999987653 1          43   3457742210       00 1136


Q ss_pred             EccCCCCccHHHHHHHHHHHHH
Q 017490          331 ITPHVGGVTEHSYRSMAKVVGD  352 (370)
Q Consensus       331 lTPHia~~t~~~~~~~~~~~~~  352 (370)
                      +||==||.-+-+..-+.+.+++
T Consensus       257 iTPVPGGVGpmT~a~Ll~ntv~  278 (285)
T 3l07_A          257 ITPVPGGVGPMTITELLYNTFQ  278 (285)
T ss_dssp             ECCSSSSSHHHHHHHHHHHHHH
T ss_pred             eCCCCCcChHHHHHHHHHHHHH
Confidence            8997677655444444444333

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=98.34  E-value=1.2e-06  Score=83.25  Aligned_cols=134  Identities=21%  Similarity=0.296  Sum_probs=90.2

Q ss_pred             cccccCceEEEEecCc-hhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHH--HHHh
Q 017490          172 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIF--EFAS  248 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~-IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--ell~  248 (370)
                      +.+++|+++.|||.|. +|+.+|..|...|++|.+++++.                              .+++  +.++
T Consensus       160 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T------------------------------~~l~l~~~~~  209 (300)
T 4a26_A          160 GIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGT------------------------------STEDMIDYLR  209 (300)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTS------------------------------CHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCC------------------------------CCchhhhhhc
Confidence            4679999999999988 79999999999999999998642                              1355  8899


Q ss_pred             cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCc
Q 017490          249 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKN  328 (370)
Q Consensus       249 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~n  328 (370)
                      +||+|+.++|.    .+++.++.   +|+|+++||++.-.+-|..     =.+|.  ...-||...+       ... --
T Consensus       210 ~ADIVI~Avg~----p~~I~~~~---vk~GavVIDvgi~~~~~~~-----~~~g~--kl~GDVdf~~-------v~~-~a  267 (300)
T 4a26_A          210 TADIVIAAMGQ----PGYVKGEW---IKEGAAVVDVGTTPVPDPS-----RKDGY--RLVGDVCFEE-------AAA-RA  267 (300)
T ss_dssp             TCSEEEECSCC----TTCBCGGG---SCTTCEEEECCCEEESCSC-----STTSC--EEECSBCHHH-------HTT-TC
T ss_pred             cCCEEEECCCC----CCCCcHHh---cCCCcEEEEEeccCCcCCc-----ccCCc--eeecCccHHH-------HHh-hc
Confidence            99999999984    34677765   5999999999875532210     00110  1344664221       011 12


Q ss_pred             eEEccCCCCccHHHHHHHHHHHHHHHHHH
Q 017490          329 VLITPHVGGVTEHSYRSMAKVVGDVALQL  357 (370)
Q Consensus       329 vilTPHia~~t~~~~~~~~~~~~~ni~~~  357 (370)
                      -.+||==||.-+-+..-+.+.+++..++.
T Consensus       268 ~~iTPVPGGVGpmT~a~Ll~Ntv~aa~~~  296 (300)
T 4a26_A          268 AWISPVPGGVGPMTIAMLLENTLEAFKAA  296 (300)
T ss_dssp             SEEECTTTSSSHHHHHHHHHHHHHHHHHH
T ss_pred             eEeCCCCCcChHHHHHHHHHHHHHHHHHH
Confidence            46789666766655555555555544443

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=98.34  E-value=1.5e-06  Score=81.64  Aligned_cols=113  Identities=19%  Similarity=0.329  Sum_probs=84.2

Q ss_pred             cccccCceEEEEecCch-hHHHHHHhccC--CCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHh
Q 017490          172 GETLLGKTVFILGFGNI-GVELAKRLRPF--GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS  248 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~I-G~~vA~~l~~~--G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  248 (370)
                      +.+++|+++.|||.|.| |+.+|+.|...  |++|...+++.                              .++.+.++
T Consensus       153 ~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t------------------------------~~L~~~~~  202 (281)
T 2c2x_A          153 DISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT------------------------------RDLPALTR  202 (281)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC------------------------------SCHHHHHT
T ss_pred             CCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch------------------------------hHHHHHHh
Confidence            45799999999999985 99999999999  89999987542                              36889999


Q ss_pred             cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCc
Q 017490          249 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKN  328 (370)
Q Consensus       249 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~n  328 (370)
                      +||+|+.+++..    ++|.+++   +|+|+++||+|.-.+-|          |    ..-||- .+       ... .-
T Consensus       203 ~ADIVI~Avg~p----~~I~~~~---vk~GavVIDVgi~r~~~----------g----lvGDVd-~~-------v~~-~a  252 (281)
T 2c2x_A          203 QADIVVAAVGVA----HLLTADM---VRPGAAVIDVGVSRTDD----------G----LVGDVH-PD-------VWE-LA  252 (281)
T ss_dssp             TCSEEEECSCCT----TCBCGGG---SCTTCEEEECCEEEETT----------E----EEESBC-GG-------GGG-TC
T ss_pred             hCCEEEECCCCC----cccCHHH---cCCCcEEEEccCCCCCC----------C----ccCccc-cc-------hhh-he
Confidence            999999998833    3688776   48999999999876432          2    456885 22       111 22


Q ss_pred             eEEccCCCCccHHHHH
Q 017490          329 VLITPHVGGVTEHSYR  344 (370)
Q Consensus       329 vilTPHia~~t~~~~~  344 (370)
                      -.+||==||.-+-+..
T Consensus       253 ~~iTPVPGGVGpmT~a  268 (281)
T 2c2x_A          253 GHVSPNPGGVGPLTRA  268 (281)
T ss_dssp             SEEECSSSSSHHHHHH
T ss_pred             eeecCCCCCccHHHHH
Confidence            3578866676554443

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=98.33  E-value=6e-07  Score=86.18  Aligned_cols=97  Identities=20%  Similarity=0.239  Sum_probs=70.3

Q ss_pred             cccccCceEEEEecCch-hHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCC------C--CC
Q 017490          172 GETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC------H--ED  242 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~I-G~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~~  242 (370)
                      +.+++|+++.|||.|.| |+.+|+.|.+.|++|.++||+....... .            ..+......      .  .+
T Consensus       172 g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~r-a------------~~la~~~~~~t~~~~t~~~~  238 (320)
T 1edz_A          172 GNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTR-G------------ESLKLNKHHVEDLGEYSEDL  238 (320)
T ss_dssp             TCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEES-C------------CCSSCCCCEEEEEEECCHHH
T ss_pred             CCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhH-H------------HHHhhhcccccccccccHhH
Confidence            56899999999999975 9999999999999999999873321000 0            011111111      1  46


Q ss_pred             HHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCC
Q 017490          243 IFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       243 l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg  287 (370)
                      +++.+++||+|+.+++..   ..+|.++.   +|+|+++||+|..
T Consensus       239 L~e~l~~ADIVIsAtg~p---~~vI~~e~---vk~GavVIDVgi~  277 (320)
T 1edz_A          239 LKKCSLDSDVVITGVPSE---NYKFPTEY---IKEGAVCINFACT  277 (320)
T ss_dssp             HHHHHHHCSEEEECCCCT---TCCBCTTT---SCTTEEEEECSSS
T ss_pred             HHHHhccCCEEEECCCCC---cceeCHHH---cCCCeEEEEcCCC
Confidence            889999999999998742   23477766   4899999999865

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=98.33  E-value=1.7e-06  Score=81.59  Aligned_cols=81  Identities=26%  Similarity=0.461  Sum_probs=68.3

Q ss_pred             cccccCceEEEEecCc-hhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490          172 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  250 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~-IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  250 (370)
                      +.+++||++.|||.|. +|+.+|..|...|++|.+..++.                              .++++.+++|
T Consensus       156 ~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T------------------------------~~L~~~~~~A  205 (286)
T 4a5o_A          156 GADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT------------------------------RDLADHVSRA  205 (286)
T ss_dssp             TCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC------------------------------SCHHHHHHTC
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC------------------------------cCHHHHhccC
Confidence            4679999999999987 79999999999999999986531                              3688899999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcc
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL  289 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~  289 (370)
                      |+|+.+++.    .+++.++.   +|||+++||++.-.+
T Consensus       206 DIVI~Avg~----p~~I~~~~---vk~GavVIDvgi~~~  237 (286)
T 4a5o_A          206 DLVVVAAGK----PGLVKGEW---IKEGAIVIDVGINRQ  237 (286)
T ss_dssp             SEEEECCCC----TTCBCGGG---SCTTCEEEECCSCSS
T ss_pred             CEEEECCCC----CCCCCHHH---cCCCeEEEEeccccc
Confidence            999999983    34677765   499999999997664

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=98.32  E-value=1.8e-06  Score=81.87  Aligned_cols=135  Identities=19%  Similarity=0.276  Sum_probs=92.0

Q ss_pred             cccccCceEEEEecCc-hhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490          172 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  250 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~-IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  250 (370)
                      +.+++|+++.|||.|. +|+.+|+.|...|++|.+++++.                              .++.+.+++|
T Consensus       160 ~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t------------------------------~~L~~~~~~A  209 (301)
T 1a4i_A          160 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT------------------------------AHLDEEVNKG  209 (301)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------------------------SSHHHHHTTC
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCc------------------------------ccHHHHhccC
Confidence            4679999999999996 69999999999999999987531                              3688999999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC-CceEEEEecCCCCCCCCCCcccCCCce
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG-HLGGLGIDVAWTEPFDPNDPILKFKNV  329 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g-~i~ga~lDV~~~EPl~~~~pL~~~~nv  329 (370)
                      |+|+.+++..    ++|.+++   +|||+++||+|.-.+-|..     =++| ++.   -||-..+       ... ---
T Consensus       210 DIVI~Avg~p----~~I~~~~---vk~GavVIDVgi~~~~d~~-----~~~g~klv---GDVdf~~-------v~~-~a~  266 (301)
T 1a4i_A          210 DILVVATGQP----EMVKGEW---IKPGAIVIDCGINYVPDDK-----KPNGRKVV---GDVAYDE-------AKE-RAS  266 (301)
T ss_dssp             SEEEECCCCT----TCBCGGG---SCTTCEEEECCCBC---------------CCB---CSBCHHH-------HTT-TCS
T ss_pred             CEEEECCCCc----ccCCHHH---cCCCcEEEEccCCCccccc-----ccCCCeee---ccccHHH-------hhh-hce
Confidence            9999998852    3688776   5899999999987643221     0123 333   3663221       111 123


Q ss_pred             EEccCCCCccHHHHHHHHHHHHHHHHHHHc
Q 017490          330 LITPHVGGVTEHSYRSMAKVVGDVALQLHA  359 (370)
Q Consensus       330 ilTPHia~~t~~~~~~~~~~~~~ni~~~~~  359 (370)
                      .+||-=||.-+-+..-+.+.+++..++.+.
T Consensus       267 ~iTPVPGGVGpmTiamLl~Ntv~aa~~~~~  296 (301)
T 1a4i_A          267 FITPVPGGVGPMTVAMLMQSTVESAKRFLE  296 (301)
T ss_dssp             EECCSSSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EeCCCCCCccHHHHHHHHHHHHHHHHHHhh
Confidence            588977776665555555555655555443

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=98.31  E-value=9.5e-07  Score=82.40  Aligned_cols=99  Identities=19%  Similarity=0.220  Sum_probs=65.7

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEec
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  257 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  257 (370)
                      ++|+|||+|.||..+|..|...|++|.++||+...... ...   .. .++.  ..... ....+ .+.++.+|+|++++
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~-l~~---~~-~~~~--~~~~~-~~~~~-~~~~~~~d~vi~~v   71 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCS-VNL---VE-TDGS--IFNES-LTAND-PDFLATSDLLLVTL   71 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEE-EEE---EC-TTSC--EEEEE-EEESC-HHHHHTCSEEEECS
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceee-EEE---Ec-CCCc--eeeee-eeecC-ccccCCCCEEEEEe
Confidence            37999999999999999999999999999997654211 000   00 0000  00000 01123 46778999999999


Q ss_pred             cCChhhhcccCHHHHhcCCCCcEEEEcCCC
Q 017490          258 SLNKQTAGIVNKSFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       258 P~t~~t~~li~~~~l~~mk~gailIN~sRg  287 (370)
                      |.. .++.++ ++....+++++++|++..|
T Consensus        72 ~~~-~~~~v~-~~l~~~l~~~~~vv~~~~g   99 (291)
T 1ks9_A           72 KAW-QVSDAV-KSLASTLPVTTPILLIHNG   99 (291)
T ss_dssp             CGG-GHHHHH-HHHHTTSCTTSCEEEECSS
T ss_pred             cHH-hHHHHH-HHHHhhCCCCCEEEEecCC
Confidence            965 455555 3455678899999998765

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=98.31  E-value=7.9e-07  Score=75.17  Aligned_cols=103  Identities=16%  Similarity=0.233  Sum_probs=76.1

Q ss_pred             ccCceEEEEec----CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490          175 LLGKTVFILGF----GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  250 (370)
Q Consensus       175 l~g~tvGIiGl----G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  250 (370)
                      .+-++|+|||+    |.+|+.+++.|...|++|+.+|+....                  .....   .+.+++++....
T Consensus        12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~------------------i~G~~---~~~s~~el~~~v   70 (138)
T 1y81_A           12 KEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDE------------------IEGLK---CYRSVRELPKDV   70 (138)
T ss_dssp             --CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE------------------ETTEE---CBSSGGGSCTTC
T ss_pred             cCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCe------------------ECCee---ecCCHHHhCCCC
Confidence            45678999999    999999999999999998888876422                  01111   356788888899


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      |++++++| .+....++. +..+ ...++++++++.    ..+++.+..++..+.
T Consensus        71 Dlvii~vp-~~~v~~v~~-~~~~-~g~~~i~~~~~~----~~~~l~~~a~~~Gi~  118 (138)
T 1y81_A           71 DVIVFVVP-PKVGLQVAK-EAVE-AGFKKLWFQPGA----ESEEIRRFLEKAGVE  118 (138)
T ss_dssp             CEEEECSC-HHHHHHHHH-HHHH-TTCCEEEECTTS----CCHHHHHHHHHHTCE
T ss_pred             CEEEEEeC-HHHHHHHHH-HHHH-cCCCEEEEcCcc----HHHHHHHHHHHCCCE
Confidence            99999999 567777664 3333 566778887754    267888888887776

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=98.30  E-value=3.4e-07  Score=83.08  Aligned_cols=91  Identities=30%  Similarity=0.331  Sum_probs=62.2

Q ss_pred             CceEEEEecCchhHHHHHHhccCCCEEEE-EcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCCEE
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVV  253 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~-~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV  253 (370)
                      -++|||||+|.||+.+|+.|...|++|.+ +||+.....                 .+....+  ...+..+.++++|+|
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~-----------------~l~~~~g~~~~~~~~~~~~~aDvV   85 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLS-----------------SVTDRFGASVKAVELKDALQADVV   85 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGH-----------------HHHHHHTTTEEECCHHHHTTSSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHH-----------------HHHHHhCCCcccChHHHHhcCCEE
Confidence            36899999999999999999999999999 998765421                 1111111  112445568899999


Q ss_pred             EEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490          254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       254 ~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~  288 (370)
                      ++++|. ...+.++.  .++. .++.++|+++-|-
T Consensus        86 ilavp~-~~~~~v~~--~l~~-~~~~ivi~~~~g~  116 (220)
T 4huj_A           86 ILAVPY-DSIADIVT--QVSD-WGGQIVVDASNAI  116 (220)
T ss_dssp             EEESCG-GGHHHHHT--TCSC-CTTCEEEECCCCB
T ss_pred             EEeCCh-HHHHHHHH--Hhhc-cCCCEEEEcCCCC
Confidence            999983 33333332  1222 3588999998664

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=98.29  E-value=7.3e-07  Score=87.01  Aligned_cols=110  Identities=11%  Similarity=0.035  Sum_probs=72.5

Q ss_pred             CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcccccccc-ccchhhhccccccccccccCCCCCHHHHHhcCCEEEE
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSC-QSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  255 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  255 (370)
                      -++|+|||.|.+|..+|..|...|++|.+|+|++.....-.. ..+. .|..+.  .+........++++.++.||+|++
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~-~~l~g~--~l~~~i~~t~d~~ea~~~aDvVil  105 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNN-RYLPNY--PFPETLKAYCDLKASLEGVTDILI  105 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBT-TTBTTC--CCCTTEEEESCHHHHHTTCCEEEE
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCc-ccCCCC--ccCCCeEEECCHHHHHhcCCEEEE
Confidence            468999999999999999999999999999997543110000 0000 000000  000000012578889999999999


Q ss_pred             eccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccC
Q 017490          256 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLD  291 (370)
Q Consensus       256 ~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd  291 (370)
                      ++|. ...+.++ ++....+++++++|+++.|=..+
T Consensus       106 aVp~-~~~~~vl-~~i~~~l~~~~ivvs~~kGi~~~  139 (356)
T 3k96_A          106 VVPS-FAFHEVI-TRMKPLIDAKTRIAWGTKGLAKG  139 (356)
T ss_dssp             CCCH-HHHHHHH-HHHGGGCCTTCEEEECCCSCBTT
T ss_pred             CCCH-HHHHHHH-HHHHHhcCCCCEEEEEeCCCCcC
Confidence            9994 3555554 34556789999999998875554

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=98.28  E-value=6e-07  Score=85.77  Aligned_cols=116  Identities=18%  Similarity=0.139  Sum_probs=72.4

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcC--CCccccccccccchhhhccccccccccccCCCC--CHHHHHhcCCEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKR--SWASHSQVSCQSSALAVKNGIIDDLVDEKGCHE--DIFEFASKADVV  253 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~ell~~aDiV  253 (370)
                      ++|+|||+|.||..+|..|...|++|.++||  +..........  ......+.  .. .......  ++.+.++.+|+|
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~--~~~~~~g~--~~-~~~~~~~~~~~~~~~~~~D~v   75 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAG--REHPRLGV--KL-NGVEIFWPEQLEKCLENAEVV   75 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTT--CCBTTTTB--CC-CSEEEECGGGHHHHHTTCSEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHh--CcCcccCc--cc-cceEEecHHhHHHHHhcCCEE
Confidence            3799999999999999999988999999998  54321100000  00000000  00 0000112  677788999999


Q ss_pred             EEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc---c-cCHHHHHHHHHh
Q 017490          254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG---L-LDYEAIAHYLEC  301 (370)
Q Consensus       254 ~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~---~-vd~~aL~~aL~~  301 (370)
                      ++++|.. .+..++. +... +++++++|+++.|-   - -..+.+.+.+.+
T Consensus        76 i~~v~~~-~~~~v~~-~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~  124 (335)
T 1txg_A           76 LLGVSTD-GVLPVMS-RILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRL  124 (335)
T ss_dssp             EECSCGG-GHHHHHH-HHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTT
T ss_pred             EEcCChH-HHHHHHH-HHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHH
Confidence            9999954 5555542 4445 88999999998774   1 123445566654

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=98.28  E-value=7.2e-07  Score=89.35  Aligned_cols=154  Identities=12%  Similarity=0.131  Sum_probs=91.2

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccc---cC---CCCCHHHHHhc
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE---KG---CHEDIFEFASK  249 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~l~ell~~  249 (370)
                      +-++|+|||+|.+|..+|..+...|++|+++|.+..+-.. ..... .+..+.-++++..+   .+   ...+.++.++.
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~-ln~G~-~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~   97 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVER-LRAGR-PHIYEPGLEEALGRALSSGRLSFAESAEEAVAA   97 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHH-HHTTC-CSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHT
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHH-HHCCC-CCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhc
Confidence            3468999999999999999999899999999987643110 00000 00000000111111   11   23578889999


Q ss_pred             CCEEEEeccCChhhh------cccC--HHHHhcCC---CCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEe-cCCCCCC
Q 017490          250 ADVVVCCLSLNKQTA------GIVN--KSFLSSMK---KGSLLVNIARGGLLDYEAIAHYLECGHLGGLGID-VAWTEPF  317 (370)
Q Consensus       250 aDiV~l~lP~t~~t~------~li~--~~~l~~mk---~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lD-V~~~EPl  317 (370)
                      ||++++|+|......      .+..  +..-+.|+   +|.++|.-|.-.+-..+.+...+.+..-.+.-++ +|.+|-+
T Consensus        98 ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~~~~~~f~v~~~PErl  177 (444)
T 3vtf_A           98 TDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEAGGVKFSVASNPEFL  177 (444)
T ss_dssp             SSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTTTTTCCCEEEECCCCC
T ss_pred             CCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHhCCCCCceeecCcccc
Confidence            999999998432211      1221  12223344   6889999999888777776654433332222222 2578887


Q ss_pred             CCCCc---ccCCCceEE
Q 017490          318 DPNDP---ILKFKNVLI  331 (370)
Q Consensus       318 ~~~~p---L~~~~nvil  331 (370)
                      .+.+.   +...++|++
T Consensus       178 ~eG~a~~d~~~~~riVi  194 (444)
T 3vtf_A          178 REGSALEDFFKPDRIVI  194 (444)
T ss_dssp             CTTSHHHHHHSCSCEEE
T ss_pred             cCCccccccccCCcEEE
Confidence            77653   445566653

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=98.28  E-value=1.7e-06  Score=82.22  Aligned_cols=111  Identities=16%  Similarity=0.180  Sum_probs=76.7

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC-------CCCCHH
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-------CHEDIF  244 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~  244 (370)
                      ..+.|++++|+|.|.+|++++..|...|+ +|.++||+..+..                 ++....+       ...++.
T Consensus       137 ~~l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~-----------------~la~~~~~~~~~~~~~~~~~  199 (297)
T 2egg_A          137 ITLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAE-----------------RLVREGDERRSAYFSLAEAE  199 (297)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHH-----------------HHHHHSCSSSCCEECHHHHH
T ss_pred             CCCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHH-----------------HHHHHhhhccCceeeHHHHH
Confidence            35789999999999999999999999998 9999999864421                 1111110       112456


Q ss_pred             HHHhcCCEEEEeccCChhh--hc-ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          245 EFASKADVVVCCLSLNKQT--AG-IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       245 ell~~aDiV~l~lP~t~~t--~~-li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      +.+.++|+|++++|.....  .. .++   .+.+++|.+++|++..+. .+. |.+..++..+.
T Consensus       200 ~~~~~aDivIn~t~~~~~~~~~~~~i~---~~~l~~~~~v~D~~y~P~-~T~-ll~~A~~~G~~  258 (297)
T 2egg_A          200 TRLAEYDIIINTTSVGMHPRVEVQPLS---LERLRPGVIVSDIIYNPL-ETK-WLKEAKARGAR  258 (297)
T ss_dssp             HTGGGCSEEEECSCTTCSSCCSCCSSC---CTTCCTTCEEEECCCSSS-SCH-HHHHHHHTTCE
T ss_pred             hhhccCCEEEECCCCCCCCCCCCCCCC---HHHcCCCCEEEEcCCCCC-CCH-HHHHHHHCcCE
Confidence            6778999999999965321  11 233   245789999999998543 333 66666665554

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=98.23  E-value=3e-06  Score=85.44  Aligned_cols=133  Identities=16%  Similarity=0.133  Sum_probs=77.0

Q ss_pred             CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccc-cchhh--hccccccc-ccccc-C-CCCCHHHHHhcC
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSALA--VKNGIIDD-LVDEK-G-CHEDIFEFASKA  250 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~-~~~~~--~~~~~~~~-~~~~~-~-~~~~l~ell~~a  250 (370)
                      =++|||||+|.||..+|..+...|++|+++|++.......... ...+.  ...+.... ..... . ...++ +.+++|
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~a  115 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTV  115 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGTTC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHCCC
Confidence            4689999999999999999999999999999876431110000 00000  00000000 00000 0 12355 467899


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCC
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW  313 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~  313 (370)
                      |+|+.++|...+.+.-+-++..+.++++++|+....+  +....|.+.+.. .-..+++..|.
T Consensus       116 DlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~--~~~~~la~~~~~-~~~~ig~hf~~  175 (463)
T 1zcj_A          116 DLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSA--LNVDDIASSTDR-PQLVIGTHFFS  175 (463)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHTTSSC-GGGEEEEEECS
T ss_pred             CEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCC--cCHHHHHHHhcC-CcceEEeecCC
Confidence            9999999976543332334455678999999863333  334466665542 22335667673

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=98.22  E-value=5.3e-07  Score=85.02  Aligned_cols=121  Identities=13%  Similarity=0.121  Sum_probs=72.7

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHH---hcCCEEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA---SKADVVV  254 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---~~aDiV~  254 (370)
                      ++|+|||+|.||..+|..|...|++|.++||+..........  .+.....  ...........+.+++.   +.+|+|+
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~--g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~vi   79 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKN--GLIADFN--GEEVVANLPIFSPEEIDHQNEQVDLII   79 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH--CEEEEET--TEEEEECCCEECGGGCCTTSCCCSEEE
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhC--CEEEEeC--CCeeEecceeecchhhcccCCCCCEEE
Confidence            479999999999999999999999999999875431100000  0000000  00000000111223333   3899999


Q ss_pred             EeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          255 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       255 l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      +++|. ..++.++ .+....+++++++|+++.|- -..+.+.+.+.+.++.
T Consensus        80 ~~v~~-~~~~~v~-~~l~~~l~~~~~iv~~~~g~-~~~~~l~~~~~~~~vi  127 (316)
T 2ew2_A           80 ALTKA-QQLDAMF-KAIQPMITEKTYVLCLLNGL-GHEDVLEKYVPKENIL  127 (316)
T ss_dssp             ECSCH-HHHHHHH-HHHGGGCCTTCEEEECCSSS-CTHHHHTTTSCGGGEE
T ss_pred             EEecc-ccHHHHH-HHHHHhcCCCCEEEEecCCC-CcHHHHHHHcCCccEE
Confidence            99994 4555554 34556688999999998753 2345666666554443

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=98.22  E-value=7.7e-07  Score=85.92  Aligned_cols=111  Identities=15%  Similarity=0.141  Sum_probs=69.4

Q ss_pred             CceEEEEecCchhHHHHHHhccCC-------CEEEEEcCCCccccc-cccccchhhhccccccc--cccccCCCCCHHHH
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFG-------VKIIATKRSWASHSQ-VSCQSSALAVKNGIIDD--LVDEKGCHEDIFEF  246 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G-------~~V~~~dr~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~el  246 (370)
                      .++|+|||+|.||..+|..|...|       ++|.+|||+...... ................+  .........++++.
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQA   87 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHH
Confidence            368999999999999999998888       899999997651000 00000000000000000  00000012567888


Q ss_pred             HhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcc
Q 017490          247 ASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL  289 (370)
Q Consensus       247 l~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~  289 (370)
                      ++.||+|++++|. ..++.++ .+....+++++++|+++.|-.
T Consensus        88 ~~~aD~Vilav~~-~~~~~v~-~~i~~~l~~~~ivv~~~~Gi~  128 (354)
T 1x0v_A           88 AEDADILIFVVPH-QFIGKIC-DQLKGHLKANATGISLIKGVD  128 (354)
T ss_dssp             HTTCSEEEECCCG-GGHHHHH-HHHTTCSCTTCEEEECCCCBC
T ss_pred             HcCCCEEEEeCCH-HHHHHHH-HHHHhhCCCCCEEEEECCccC
Confidence            8999999999995 4555554 244456789999999988754

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=98.21  E-value=1.7e-06  Score=91.85  Aligned_cols=156  Identities=15%  Similarity=0.128  Sum_probs=88.6

Q ss_pred             CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccc-cchhh--hccccccc-----cccccCCCCCHHHHHh
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSALA--VKNGIIDD-----LVDEKGCHEDIFEFAS  248 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~-~~~~~--~~~~~~~~-----~~~~~~~~~~l~ell~  248 (370)
                      =++|||||+|.||..+|..+...|++|++||+++......... ...+.  ...+.+..     .........++ +.++
T Consensus       314 i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~  392 (715)
T 1wdk_A          314 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFG  392 (715)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGG
T ss_pred             CCEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHHC
Confidence            3579999999999999999999999999999986432110000 00000  00000000     00000012345 5688


Q ss_pred             cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCC
Q 017490          249 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLV-NIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFK  327 (370)
Q Consensus       249 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailI-N~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~  327 (370)
                      +||+|+.++|...+.+.-+-++..+.++++++|+ |+|.   +....+.+.+.. .-..+++..|.  |.      ..++
T Consensus       393 ~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntSt---l~i~~la~~~~~-~~~~ig~hf~~--P~------~~~~  460 (715)
T 1wdk_A          393 NVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTST---ISISLLAKALKR-PENFVGMHFFN--PV------HMMP  460 (715)
T ss_dssp             GCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSS---SCHHHHGGGCSC-GGGEEEEECCS--ST------TTCC
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCC---CCHHHHHHHhcC-ccceEEEEccC--Cc------ccCc
Confidence            9999999999877655433345667789999997 4543   333455555432 22345677665  32      2345


Q ss_pred             ceEEccCCCCccHHHHHHH
Q 017490          328 NVLITPHVGGVTEHSYRSM  346 (370)
Q Consensus       328 nvilTPHia~~t~~~~~~~  346 (370)
                      .+.+.|+- ..+++..+.+
T Consensus       461 lvevv~g~-~t~~e~~~~~  478 (715)
T 1wdk_A          461 LVEVIRGE-KSSDLAVATT  478 (715)
T ss_dssp             EEEEEECS-SCCHHHHHHH
T ss_pred             eEEEEECC-CCCHHHHHHH
Confidence            56565542 1244444433

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=98.20  E-value=1.7e-06  Score=79.19  Aligned_cols=97  Identities=23%  Similarity=0.219  Sum_probs=72.2

Q ss_pred             eEEEEecCchhHHHHHHhccCCCEE-EEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHH-hcCCEEEEe
Q 017490          179 TVFILGFGNIGVELAKRLRPFGVKI-IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA-SKADVVVCC  256 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G~~V-~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV~l~  256 (370)
                      +|||||+|.||+.+++.+...|++| .++|++.+.                  ..      .+.++++++ .++|+|++|
T Consensus         2 ~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~~~------------------~~------~~~~~~~l~~~~~DvVv~~   57 (236)
T 2dc1_A            2 LVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGEH------------------EK------MVRGIDEFLQREMDVAVEA   57 (236)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCCC------------------TT------EESSHHHHTTSCCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHhcCCCEEEEEEecCcch------------------hh------hcCCHHHHhcCCCCEEEEC
Confidence            7999999999999999988889997 688886321                  01      235788888 699999999


Q ss_pred             ccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHhCCc
Q 017490          257 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDY---EAIAHYLECGHL  304 (370)
Q Consensus       257 lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~---~aL~~aL~~g~i  304 (370)
                      +|.... ..+    ....++.|..+|+.+.+..-+.   +.|.++.++...
T Consensus        58 ~~~~~~-~~~----~~~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~  103 (236)
T 2dc1_A           58 ASQQAV-KDY----AEKILKAGIDLIVLSTGAFADRDFLSRVREVCRKTGR  103 (236)
T ss_dssp             SCHHHH-HHH----HHHHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHCC
T ss_pred             CCHHHH-HHH----HHHHHHCCCcEEEECcccCChHHHHHHHHHHHHhcCC
Confidence            984322 212    2345778999999998877666   677777776444

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=98.19  E-value=2.9e-07  Score=89.55  Aligned_cols=109  Identities=15%  Similarity=0.177  Sum_probs=68.7

Q ss_pred             eEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEecc
Q 017490          179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLS  258 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP  258 (370)
                      +|+|||+|.||..+|..|...|++|.+|||+...............+..+.  ..........++++.++.+|+|++++|
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~aDvVilav~   94 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGV--QLASNITFTSDVEKAYNGAEIILFVIP   94 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTC--BCCTTEEEESCHHHHHTTCSSEEECCC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCccccccccc--ccccceeeeCCHHHHHcCCCEEEECCC
Confidence            899999999999999999999999999998754311000000000000000  000000012467888899999999999


Q ss_pred             CChhhhcccCHH---HHhcCCC-CcEEEEcCCCccc
Q 017490          259 LNKQTAGIVNKS---FLSSMKK-GSLLVNIARGGLL  290 (370)
Q Consensus       259 ~t~~t~~li~~~---~l~~mk~-gailIN~sRg~~v  290 (370)
                      . ..++.++...   ....+++ ++++|+++.|-..
T Consensus        95 ~-~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~  129 (366)
T 1evy_A           95 T-QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIER  129 (366)
T ss_dssp             H-HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCT
T ss_pred             h-HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCC
Confidence            4 5555555321   4455778 9999999877433

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=98.15  E-value=1e-06  Score=75.01  Aligned_cols=104  Identities=14%  Similarity=0.115  Sum_probs=74.5

Q ss_pred             CceEEEEec----CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCE
Q 017490          177 GKTVFILGF----GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  252 (370)
Q Consensus       177 g~tvGIiGl----G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  252 (370)
                      -++|+|||+    |.+|..+++.|...|++|+.+|+......                .....   .+.+++++....|+
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~----------------i~G~~---~~~sl~el~~~~Dl   73 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKT----------------LLGQQ---GYATLADVPEKVDM   73 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSE----------------ETTEE---CCSSTTTCSSCCSE
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCcccccc----------------cCCee---ccCCHHHcCCCCCE
Confidence            468999999    89999999999999999988887641000                01111   34567777778999


Q ss_pred             EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceE
Q 017490          253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGG  306 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~g  306 (370)
                      +++++| .+....++. +..+ ...++++++.+.-    ++++.+++++..+.-
T Consensus        74 vii~vp-~~~v~~v~~-~~~~-~g~~~i~i~~~~~----~~~l~~~a~~~Gi~~  120 (145)
T 2duw_A           74 VDVFRN-SEAAWGVAQ-EAIA-IGAKTLWLQLGVI----NEQAAVLAREAGLSV  120 (145)
T ss_dssp             EECCSC-STHHHHHHH-HHHH-HTCCEEECCTTCC----CHHHHHHHHTTTCEE
T ss_pred             EEEEeC-HHHHHHHHH-HHHH-cCCCEEEEcCChH----HHHHHHHHHHcCCEE
Confidence            999999 466666664 2333 4567777776422    788899999887763

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=98.15  E-value=1.1e-06  Score=82.46  Aligned_cols=103  Identities=21%  Similarity=0.182  Sum_probs=70.8

Q ss_pred             CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHHhcCCE
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKADV  252 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~aDi  252 (370)
                      |+++.|+|.|.+|++++..|...|.+|.+++|+.++..                 ++. +.+    ..+++    .++|+
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~-----------------~la-~~~~~~~~~~~l----~~~Di  175 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLD-----------------FFQ-RLGCDCFMEPPK----SAFDL  175 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHH-----------------HHH-HHTCEEESSCCS----SCCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-----------------HHH-HCCCeEecHHHh----ccCCE
Confidence            88999999999999999999999999999999876521                 111 111    12232    28999


Q ss_pred             EEEeccCChhhhcccCHHHHh-cCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 017490          253 VVCCLSLNKQTAGIVNKSFLS-SMKKGSLLVNIARGGLLDYEAIAHYLECGHL  304 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~~l~-~mk~gailIN~sRg~~vd~~aL~~aL~~g~i  304 (370)
                      |++++|........++.+.+. .++++.+++|+...+  .+. |+++.++..+
T Consensus       176 VInaTp~Gm~~~~~l~~~~l~~~l~~~~~v~D~vY~P--~T~-ll~~A~~~G~  225 (269)
T 3phh_A          176 IINATSASLHNELPLNKEVLKGYFKEGKLAYDLAYGF--LTP-FLSLAKELKT  225 (269)
T ss_dssp             EEECCTTCCCCSCSSCHHHHHHHHHHCSEEEESCCSS--CCH-HHHHHHHTTC
T ss_pred             EEEcccCCCCCCCCCChHHHHhhCCCCCEEEEeCCCC--chH-HHHHHHHCcC
Confidence            999999753322345655332 567888999998876  444 5444444433

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=98.13  E-value=8.5e-07  Score=86.73  Aligned_cols=106  Identities=14%  Similarity=0.186  Sum_probs=67.8

Q ss_pred             ceEEEEecCchhHHHHHHhccCC-------CEEEEEcCCCc-----ccccccc-ccchhhhccccccccccccCCCCCHH
Q 017490          178 KTVFILGFGNIGVELAKRLRPFG-------VKIIATKRSWA-----SHSQVSC-QSSALAVKNGIIDDLVDEKGCHEDIF  244 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G-------~~V~~~dr~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~  244 (370)
                      ++|+|||+|.||..+|..|...|       .+|.+|||+..     ....-.. .... .+..+.  ..........+++
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~-~~~~~~--~~~~~i~~~~~~~   98 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENT-KYLKGV--PLPHNIVAHSDLA   98 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCT-TTSTTC--BCCTTEEEESSTH
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCccc-ccCCcc--cCcCCeEEECCHH
Confidence            47999999999999999998878       89999999765     2100000 0000 000000  0000001124677


Q ss_pred             HHHhcCCEEEEeccCChhhhcccCHHHHh----cCCCCcEEEEcCCCc
Q 017490          245 EFASKADVVVCCLSLNKQTAGIVNKSFLS----SMKKGSLLVNIARGG  288 (370)
Q Consensus       245 ell~~aDiV~l~lP~t~~t~~li~~~~l~----~mk~gailIN~sRg~  288 (370)
                      +.++.+|+|++++|. ..++.++. +...    .+++++++|+++.|-
T Consensus        99 ea~~~aDvVilav~~-~~~~~vl~-~i~~~~~~~l~~~~ivvs~~~Gi  144 (375)
T 1yj8_A           99 SVINDADLLIFIVPC-QYLESVLA-SIKESESIKIASHAKAISLTKGF  144 (375)
T ss_dssp             HHHTTCSEEEECCCH-HHHHHHHH-HHTC---CCCCTTCEEEECCCSC
T ss_pred             HHHcCCCEEEEcCCH-HHHHHHHH-HHhhhhhccCCCCCEEEEeCCcc
Confidence            888999999999994 55555543 3334    688899999998773

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=98.12  E-value=1.1e-06  Score=84.54  Aligned_cols=98  Identities=19%  Similarity=0.301  Sum_probs=63.2

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEec
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  257 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  257 (370)
                      .+|+|||+|.||..+|..|...|++|.+|+|+......-...  ....   .............++++ ++.+|+|++++
T Consensus        15 ~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~--g~~~---~~~~~~~~~~~~~~~~~-~~~aDvVil~v   88 (335)
T 1z82_A           15 MRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVS--HTSP---YVEESKITVRATNDLEE-IKKEDILVIAI   88 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHH--SCBT---TBTTCCCCSEEESCGGG-CCTTEEEEECS
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHh--CCcc---cCCCCeeeEEEeCCHHH-hcCCCEEEEEC
Confidence            479999999999999999999999999999975431100000  0000   00000000011246677 88999999999


Q ss_pred             cCChhhhcccCHHHHhcCC-CCcEEEEcCCC
Q 017490          258 SLNKQTAGIVNKSFLSSMK-KGSLLVNIARG  287 (370)
Q Consensus       258 P~t~~t~~li~~~~l~~mk-~gailIN~sRg  287 (370)
                      |. ..++.++     ..++ ++.++|+++.|
T Consensus        89 k~-~~~~~v~-----~~l~~~~~~vv~~~nG  113 (335)
T 1z82_A           89 PV-QYIREHL-----LRLPVKPSMVLNLSKG  113 (335)
T ss_dssp             CG-GGHHHHH-----TTCSSCCSEEEECCCC
T ss_pred             CH-HHHHHHH-----HHhCcCCCEEEEEeCC
Confidence            94 5555544     2333 78999999976

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=98.11  E-value=3.1e-06  Score=89.95  Aligned_cols=144  Identities=17%  Similarity=0.108  Sum_probs=83.2

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccc-cchhh--hccccccc-----cccccCCCCCHHHHHhc
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSALA--VKNGIIDD-----LVDEKGCHEDIFEFASK  249 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~-~~~~~--~~~~~~~~-----~~~~~~~~~~l~ell~~  249 (370)
                      ++|||||+|.||..+|..+...|++|++||+++......... ...+.  ...+.+..     .........++ +.+++
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~  391 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESFRD  391 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGGTT
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HHHCC
Confidence            689999999999999999999999999999986432110000 00000  00000000     00000012345 56889


Q ss_pred             CCEEEEeccCChhhhcccCHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCc
Q 017490          250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLV-NIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKN  328 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailI-N~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~n  328 (370)
                      ||+|+.++|...+.+.-+-++..+.++++++++ |+|.   +....+.+.+.. .-..+++..|.  |.      ..+|.
T Consensus       392 aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntSt---l~i~~la~~~~~-p~~~iG~hf~~--P~------~~~~l  459 (725)
T 2wtb_A          392 VDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTST---IDLNKIGERTKS-QDRIVGAHFFS--PA------HIMPL  459 (725)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS---SCHHHHTTTCSC-TTTEEEEEECS--ST------TTCCE
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCC---CCHHHHHHHhcC-CCCEEEecCCC--Cc------ccCce
Confidence            999999999876654433345667789999985 4543   233445554432 22345677666  31      23455


Q ss_pred             eEEccC
Q 017490          329 VLITPH  334 (370)
Q Consensus       329 vilTPH  334 (370)
                      +.+.|+
T Consensus       460 vevv~g  465 (725)
T 2wtb_A          460 LEIVRT  465 (725)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            666554

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=97.98  E-value=1.3e-06  Score=81.77  Aligned_cols=87  Identities=14%  Similarity=0.092  Sum_probs=53.9

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEE-EEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKI-IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVC  255 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V-~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l  255 (370)
                      .+|||||+|.||+.+|+.+... ++| .+||++.....                 ......+ ...+++++++++|+|++
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~-----------------~~~~~~g~~~~~~~~~~~~~DvVil   64 (276)
T 2i76_A            3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRAR-----------------NLAEVYGGKAATLEKHPELNGVVFV   64 (276)
T ss_dssp             -CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHH-----------------HHHHHTCCCCCSSCCCCC---CEEE
T ss_pred             ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHH-----------------HHHHHcCCccCCHHHHHhcCCEEEE
Confidence            3799999999999999999877 888 58998754311                 0111111 23456667788999999


Q ss_pred             eccCChhhhcccCHHHHhcC-CCCcEEEEcCCCc
Q 017490          256 CLSLNKQTAGIVNKSFLSSM-KKGSLLVNIARGG  288 (370)
Q Consensus       256 ~lP~t~~t~~li~~~~l~~m-k~gailIN~sRg~  288 (370)
                      ++|... ..     +.+..+ +++.++|+++-+-
T Consensus        65 av~~~~-~~-----~v~~~l~~~~~ivi~~s~~~   92 (276)
T 2i76_A           65 IVPDRY-IK-----TVANHLNLGDAVLVHCSGFL   92 (276)
T ss_dssp             CSCTTT-HH-----HHHTTTCCSSCCEEECCSSS
T ss_pred             eCChHH-HH-----HHHHHhccCCCEEEECCCCC
Confidence            999653 22     333333 6899999998553

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=97.98  E-value=3.7e-05  Score=75.39  Aligned_cols=113  Identities=16%  Similarity=0.210  Sum_probs=80.3

Q ss_pred             cccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCC----Cccccccccccchhhhcccccccccccc---CCCCCH
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS----WASHSQVSCQSSALAVKNGIIDDLVDEK---GCHEDI  243 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l  243 (370)
                      ++.+++.+|.|+|.|.+|..+|+.+.+.|. +|+.+|++    ..+.......   +.      ..+....   ....+|
T Consensus       187 g~~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~---~k------~~~A~~~~~~~~~~~L  257 (388)
T 1vl6_A          187 EKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNE---YH------LEIARITNPERLSGDL  257 (388)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSH---HH------HHHHHTSCTTCCCSCH
T ss_pred             CCCCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCH---HH------HHHHHhhhccCchhhH
Confidence            457899999999999999999999999999 89999997    3221000000   00      0111111   134679


Q ss_pred             HHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHH
Q 017490          244 FEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL-LDYEAIAHY  298 (370)
Q Consensus       244 ~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~-vd~~aL~~a  298 (370)
                      ++.++.+|+++-+.     +.++++++.++.|+++++++.+|+.-. +..++..++
T Consensus       258 ~eav~~ADVlIG~S-----ap~l~t~emVk~Ma~~pIIfalSNPt~E~~p~~a~~~  308 (388)
T 1vl6_A          258 ETALEGADFFIGVS-----RGNILKPEWIKKMSRKPVIFALANPVPEIDPELAREA  308 (388)
T ss_dssp             HHHHTTCSEEEECS-----CSSCSCHHHHTTSCSSCEEEECCSSSCSSCHHHHHHT
T ss_pred             HHHHccCCEEEEeC-----CCCccCHHHHHhcCCCCEEEEcCCCCCCCCHHHHHHh
Confidence            99999999988772     138999999999999999999998553 334444443

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.97  E-value=2.9e-05  Score=66.03  Aligned_cols=104  Identities=14%  Similarity=0.114  Sum_probs=62.7

Q ss_pred             cccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCC---HHHH-H
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHED---IFEF-A  247 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~el-l  247 (370)
                      .....+++|.|+|+|.+|+.+|+.|+..|++|+++|+++.........           .....-.+...+   +.+. +
T Consensus        14 ~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~-----------~g~~~~~~d~~~~~~l~~~~~   82 (155)
T 2g1u_A           14 SKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSE-----------FSGFTVVGDAAEFETLKECGM   82 (155)
T ss_dssp             ---CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTT-----------CCSEEEESCTTSHHHHHTTTG
T ss_pred             hcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhc-----------CCCcEEEecCCCHHHHHHcCc
Confidence            345678899999999999999999999999999999876542110000           000000011222   2232 5


Q ss_pred             hcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490          248 SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       248 ~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~  288 (370)
                      ..+|+|++++|.......+  ....+.+.+...+|-..++.
T Consensus        83 ~~ad~Vi~~~~~~~~~~~~--~~~~~~~~~~~~iv~~~~~~  121 (155)
T 2g1u_A           83 EKADMVFAFTNDDSTNFFI--SMNARYMFNVENVIARVYDP  121 (155)
T ss_dssp             GGCSEEEECSSCHHHHHHH--HHHHHHTSCCSEEEEECSSG
T ss_pred             ccCCEEEEEeCCcHHHHHH--HHHHHHHCCCCeEEEEECCH
Confidence            6899999999864433222  23444455566666665554

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.92  E-value=5.5e-06  Score=72.33  Aligned_cols=99  Identities=17%  Similarity=0.158  Sum_probs=64.3

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccC-CCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCCCC---HHHH-
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHED---IFEF-  246 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~-G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---l~el-  246 (370)
                      .++.+++|+|+|+|.+|+.+|+.|+.. |++|+++|+++.......             ..... ..+...+   +.++ 
T Consensus        35 ~~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~-------------~~g~~~~~gd~~~~~~l~~~~  101 (183)
T 3c85_A           35 INPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHR-------------SEGRNVISGDATDPDFWERIL  101 (183)
T ss_dssp             BCCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHH-------------HTTCCEEECCTTCHHHHHTBC
T ss_pred             cCCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHH-------------HCCCCEEEcCCCCHHHHHhcc
Confidence            457788999999999999999999998 999999998764311000             00000 0111223   3333 


Q ss_pred             -HhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          247 -ASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       247 -l~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                       +.++|+|++++|..+.+..++  ..++.+.+...+|..+.
T Consensus       102 ~~~~ad~vi~~~~~~~~~~~~~--~~~~~~~~~~~ii~~~~  140 (183)
T 3c85_A          102 DTGHVKLVLLAMPHHQGNQTAL--EQLQRRNYKGQIAAIAE  140 (183)
T ss_dssp             SCCCCCEEEECCSSHHHHHHHH--HHHHHTTCCSEEEEEES
T ss_pred             CCCCCCEEEEeCCChHHHHHHH--HHHHHHCCCCEEEEEEC
Confidence             568999999999655544433  34556666666665433

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=97.89  E-value=8.4e-06  Score=80.22  Aligned_cols=83  Identities=24%  Similarity=0.353  Sum_probs=68.5

Q ss_pred             cCceEEEEec-CchhHHHHHHhccCCC---EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCC
Q 017490          176 LGKTVFILGF-GNIGVELAKRLRPFGV---KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  251 (370)
Q Consensus       176 ~g~tvGIiGl-G~IG~~vA~~l~~~G~---~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  251 (370)
                      ...+|.|||. |.+|+..++.++++|+   .|.++|++...                   .     +.  .+ +.+.++|
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~-------------------~-----g~--~~-~~i~~aD  265 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETS-------------------R-----GG--PF-DEIPQAD  265 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHT-------------------T-----CS--CC-THHHHSS
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccccc-------------------c-----CC--ch-hhHhhCC
Confidence            3567889999 9999999999999998   89999976421                   0     10  12 3466999


Q ss_pred             EEEEeccCChhhhcccCHHHHhcC-CCCcEEEEcC
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSM-KKGSLLVNIA  285 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~m-k~gailIN~s  285 (370)
                      +|+.++........+++++.++.| |||+++||+|
T Consensus       266 ivIn~vlig~~aP~Lvt~e~v~~m~k~gsVIVDVA  300 (394)
T 2qrj_A          266 IFINCIYLSKPIAPFTNMEKLNNPNRRLRTVVDVS  300 (394)
T ss_dssp             EEEECCCCCSSCCCSCCHHHHCCTTCCCCEEEETT
T ss_pred             EEEECcCcCCCCCcccCHHHHhcCcCCCeEEEEEe
Confidence            999999986666789999999999 9999999997

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=97.87  E-value=1.7e-05  Score=77.24  Aligned_cols=99  Identities=13%  Similarity=0.146  Sum_probs=66.2

Q ss_pred             cCceEEEEecCchhHHHHHHhc-cCC-CEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEE
Q 017490          176 LGKTVFILGFGNIGVELAKRLR-PFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  253 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~-~~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  253 (370)
                      ..+++||||+|.+|+.+++.+. ..+ .+|.+|||+..+...-...   +.  . .  ... ......++++++++||+|
T Consensus       128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~---~~--~-~--~g~-~~~~~~~~~eav~~aDiV  198 (350)
T 1x7d_A          128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIAN---LK--E-Y--SGL-TIRRASSVAEAVKGVDII  198 (350)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHH---HT--T-C--TTC-EEEECSSHHHHHTTCSEE
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHH---HH--h-c--cCc-eEEEeCCHHHHHhcCCEE
Confidence            4679999999999999998764 334 5899999986542110000   00  0 0  000 001246889999999999


Q ss_pred             EEeccCChhhhcccCHHHHhcCCCCcEEEEcCCC
Q 017490          254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       254 ~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg  287 (370)
                      ++|+|.. ....++..   +.+++|..+++++..
T Consensus       199 i~aTps~-~~~pvl~~---~~l~~G~~V~~vgs~  228 (350)
T 1x7d_A          199 TTVTADK-AYATIITP---DMLEPGMHLNAVGGD  228 (350)
T ss_dssp             EECCCCS-SEEEEECG---GGCCTTCEEEECSCC
T ss_pred             EEeccCC-CCCceecH---HHcCCCCEEEECCCC
Confidence            9999975 23455654   457899999999863

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=97.85  E-value=3.3e-05  Score=74.01  Aligned_cols=91  Identities=20%  Similarity=0.285  Sum_probs=64.7

Q ss_pred             cCceEEEEecCchhHHHHHHhcc-CC-CEEEEEcCCCccccccccccchhhhccccccccccccC---CCCCHHHHHhcC
Q 017490          176 LGKTVFILGFGNIGVELAKRLRP-FG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFASKA  250 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~-~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~~a  250 (370)
                      ..++++|||.|.+|+.+++.+.. ++ -+|.+|||+ +.....              .++....+   ...++++.+++|
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~-~a~~la--------------~~l~~~~g~~~~~~~~~eav~~a  184 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY-ASPEIL--------------ERIGRRCGVPARMAAPADIAAQA  184 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT-CCHHHH--------------HHHHHHHTSCEEECCHHHHHHHC
T ss_pred             CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc-HHHHHH--------------HHHHHhcCCeEEEeCHHHHHhhC
Confidence            36799999999999999998875 44 489999998 431110              01000011   112899999999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCC
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg  287 (370)
                      |+|++|+|..   ..++..+   .+|||+++++++..
T Consensus       185 DIVi~aT~s~---~pvl~~~---~l~~G~~V~~vGs~  215 (313)
T 3hdj_A          185 DIVVTATRST---TPLFAGQ---ALRAGAFVGAIGSS  215 (313)
T ss_dssp             SEEEECCCCS---SCSSCGG---GCCTTCEEEECCCS
T ss_pred             CEEEEccCCC---CcccCHH---HcCCCcEEEECCCC
Confidence            9999998864   4566643   58999999999764

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.84  E-value=2.9e-05  Score=63.82  Aligned_cols=95  Identities=19%  Similarity=0.207  Sum_probs=57.4

Q ss_pred             CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHH----HhcCCE
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF----ASKADV  252 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~aDi  252 (370)
                      +++|+|+|+|.+|+.+|+.|...|++|.++|+++......       ....    ......+...+.+.+    +.++|+
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~-------~~~~----~~~~~~~d~~~~~~l~~~~~~~~d~   72 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKA-------SAEI----DALVINGDCTKIKTLEDAGIEDADM   72 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-------HHHC----SSEEEESCTTSHHHHHHTTTTTCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHH-------HHhc----CcEEEEcCCCCHHHHHHcCcccCCE
Confidence            5789999999999999999999999999999875431100       0000    000001112233222    568999


Q ss_pred             EEEeccCChhhhcccCHHHHhcCCCCcEEEEc
Q 017490          253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNI  284 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~  284 (370)
                      |++++|.......+  ....+.++++.+++-+
T Consensus        73 vi~~~~~~~~~~~~--~~~~~~~~~~~ii~~~  102 (140)
T 1lss_A           73 YIAVTGKEEVNLMS--SLLAKSYGINKTIARI  102 (140)
T ss_dssp             EEECCSCHHHHHHH--HHHHHHTTCCCEEEEC
T ss_pred             EEEeeCCchHHHHH--HHHHHHcCCCEEEEEe
Confidence            99999864332211  2345557777666544

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.83  E-value=2.9e-05  Score=72.55  Aligned_cols=99  Identities=12%  Similarity=0.123  Sum_probs=64.3

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccc-cCCCCCHHHHH-hcC
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE-KGCHEDIFEFA-SKA  250 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ell-~~a  250 (370)
                      ..+.|+++.|+|.|.+|+++|+.|...|.+|++++|+..+......             ..... .....+++++. .++
T Consensus       115 ~~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~-------------~~~~~~~~~~~~~~~~~~~~~  181 (271)
T 1nyt_A          115 FIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAK-------------LFAHTGSIQALSMDELEGHEF  181 (271)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHH-------------HTGGGSSEEECCSGGGTTCCC
T ss_pred             cCcCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHH-------------HhhccCCeeEecHHHhccCCC
Confidence            3578999999999999999999999999999999998543110000             00000 00011223333 589


Q ss_pred             CEEEEeccCChhhhcc--cCHHHHhcCCCCcEEEEcCCCc
Q 017490          251 DVVVCCLSLNKQTAGI--VNKSFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       251 DiV~l~lP~t~~t~~l--i~~~~l~~mk~gailIN~sRg~  288 (370)
                      |+|+.++|.... ..+  +..+   .++++.+++|+...+
T Consensus       182 DivVn~t~~~~~-~~~~~i~~~---~l~~~~~v~D~~y~p  217 (271)
T 1nyt_A          182 DLIINATSSGIS-GDIPAIPSS---LIHPGIYCYDMFYQK  217 (271)
T ss_dssp             SEEEECCSCGGG-TCCCCCCGG---GCCTTCEEEESCCCS
T ss_pred             CEEEECCCCCCC-CCCCCCCHH---HcCCCCEEEEeccCC
Confidence            999999986533 111  3322   257888999988765

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=97.81  E-value=3.9e-06  Score=79.36  Aligned_cols=120  Identities=16%  Similarity=0.187  Sum_probs=68.9

Q ss_pred             ceEEEEecCchhHHHHHHhccC-----C-CEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCC
Q 017490          178 KTVFILGFGNIGVELAKRLRPF-----G-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  251 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~-----G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  251 (370)
                      ++|+|||+|.||..+|..|...     | ++|.+++| ......-.. ...+...... ...........+..+.+..+|
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~-~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~D   85 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRA-AGGLRVVTPS-RDFLARPTCVTDNPAEVGTVD   85 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHH-HTSEEEECSS-CEEEECCSEEESCHHHHCCEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHh-cCCeEEEeCC-CCeEEecceEecCccccCCCC
Confidence            4799999999999999999887     9 99999998 332100000 0000000000 000000000012234578899


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGH  303 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~  303 (370)
                      +|++++|... ++.++ .+....+++++++|.+..| +-.++.+.+.+...+
T Consensus        86 ~vil~vk~~~-~~~v~-~~i~~~l~~~~~iv~~~nG-~~~~~~l~~~l~~~~  134 (317)
T 2qyt_A           86 YILFCTKDYD-MERGV-AEIRPMIGQNTKILPLLNG-ADIAERMRTYLPDTV  134 (317)
T ss_dssp             EEEECCSSSC-HHHHH-HHHGGGEEEEEEEEECSCS-SSHHHHHTTTSCTTT
T ss_pred             EEEEecCccc-HHHHH-HHHHhhcCCCCEEEEccCC-CCcHHHHHHHCCCCc
Confidence            9999999653 44444 2344457788999999776 222355656554433

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=97.81  E-value=1.2e-05  Score=77.41  Aligned_cols=122  Identities=18%  Similarity=0.169  Sum_probs=75.0

Q ss_pred             CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEe
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  256 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  256 (370)
                      .++|+|||.|.||..+|..|...|.+|.+++|. .... ... ...+...... ...........++++ +..+|+|+++
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~~~-~~~-~~g~~~~~~~-~~~~~~~~~~~~~~~-~~~~D~Vila   77 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG-ATLQ-ALQ-TAGLRLTEDG-ATHTLPVRATHDAAA-LGEQDVVIVA   77 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HHHH-HHH-HTCEEEEETT-EEEEECCEEESCHHH-HCCCSEEEEC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HHHH-HHH-HCCCEEecCC-CeEEEeeeEECCHHH-cCCCCEEEEe
Confidence            368999999999999999999999999999984 2110 000 0000000000 000000001245665 5899999999


Q ss_pred             ccCChhhhcccCHHHHhcCCCCcEEEEcCCCc------------------ccCHHHHHHHHHhCCce
Q 017490          257 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG------------------LLDYEAIAHYLECGHLG  305 (370)
Q Consensus       257 lP~t~~t~~li~~~~l~~mk~gailIN~sRg~------------------~vd~~aL~~aL~~g~i~  305 (370)
                      +|. .+++.++. +....+++++++|.+..|=                  +-.++.+.+.+-..++.
T Consensus        78 vk~-~~~~~~~~-~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~v~  142 (335)
T 3ghy_A           78 VKA-PALESVAA-GIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPTRHVL  142 (335)
T ss_dssp             CCH-HHHHHHHG-GGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCGGGEE
T ss_pred             CCc-hhHHHHHH-HHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCcccEE
Confidence            995 45555542 3444578899999998882                  22345677777555544

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=97.81  E-value=7.2e-06  Score=76.81  Aligned_cols=106  Identities=15%  Similarity=0.130  Sum_probs=61.5

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHH-hcCC
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA-SKAD  251 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aD  251 (370)
                      ..+.|++++|+|.|.+|++++..|...|.+|.+++|+..+...-..   .+.       .. .. ....+++++. .++|
T Consensus       115 ~~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~---~~~-------~~-~~-~~~~~~~~~~~~~~D  182 (272)
T 1p77_A          115 WLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAE---RFQ-------PY-GN-IQAVSMDSIPLQTYD  182 (272)
T ss_dssp             CCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHH---HHG-------GG-SC-EEEEEGGGCCCSCCS
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH---Hcc-------cc-CC-eEEeeHHHhccCCCC
Confidence            3578999999999999999999999999999999998643211000   000       00 00 0011233332 3899


Q ss_pred             EEEEeccCChhhhc-ccCHHHHhcCCCCcEEEEcCCCcccCHH
Q 017490          252 VVVCCLSLNKQTAG-IVNKSFLSSMKKGSLLVNIARGGLLDYE  293 (370)
Q Consensus       252 iV~l~lP~t~~t~~-li~~~~l~~mk~gailIN~sRg~~vd~~  293 (370)
                      +|++++|......- -++.+.   ++++.+++|+...+..+..
T Consensus       183 ivIn~t~~~~~~~~~~i~~~~---l~~~~~v~D~~y~p~~~t~  222 (272)
T 1p77_A          183 LVINATSAGLSGGTASVDAEI---LKLGSAFYDMQYAKGTDTP  222 (272)
T ss_dssp             EEEECCCC-------CCCHHH---HHHCSCEEESCCCTTSCCH
T ss_pred             EEEECCCCCCCCCCCCCCHHH---cCCCCEEEEeeCCCCcCCH
Confidence            99999986532110 123232   2456666666665443233

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=97.77  E-value=2.2e-05  Score=77.83  Aligned_cols=101  Identities=25%  Similarity=0.310  Sum_probs=71.6

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCC
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKAD  251 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aD  251 (370)
                      .-|+||+|+|||||.=|.+-|..|+..|.+|++--|.......    ..++        ..+.+.+ ...+..|+.+.||
T Consensus        33 ~~lkgK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~----~~S~--------~~A~~~Gf~v~~~~eA~~~AD  100 (491)
T 3ulk_A           33 SYLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEK----RASW--------RKATENGFKVGTYEELIPQAD  100 (491)
T ss_dssp             GGGTTSEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTT----CHHH--------HHHHHTTCEEEEHHHHGGGCS
T ss_pred             HHHcCCEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccc----cchH--------HHHHHCCCEecCHHHHHHhCC
Confidence            4589999999999999999999999999999876552210000    0000        0111112 3457899999999


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~  288 (370)
                      +|.+.+|...+.. +. ++....||+|+.|. .|.|-
T Consensus       101 vV~~L~PD~~q~~-vy-~~I~p~lk~G~~L~-faHGF  134 (491)
T 3ulk_A          101 LVINLTPDKQHSD-VV-RTVQPLMKDGAALG-YSHGF  134 (491)
T ss_dssp             EEEECSCGGGHHH-HH-HHHGGGSCTTCEEE-ESSCH
T ss_pred             EEEEeCChhhHHH-HH-HHHHhhCCCCCEEE-ecCcc
Confidence            9999999754433 44 46889999999887 56664

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.76  E-value=8.8e-06  Score=76.84  Aligned_cols=111  Identities=15%  Similarity=0.137  Sum_probs=69.7

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhcccccccccccc-CCCCCHHHHHhcC
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-GCHEDIFEFASKA  250 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ell~~a  250 (370)
                      .++.|+++.|+|.|.+|++++..|...|+ +|.+++|+..+......             +..... ....+++++..++
T Consensus       122 ~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~-------------~~~~~~~~~~~~~~~l~~~a  188 (281)
T 3o8q_A          122 VLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAE-------------LVAAYGEVKAQAFEQLKQSY  188 (281)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHH-------------HHGGGSCEEEEEGGGCCSCE
T ss_pred             CCccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHH-------------HhhccCCeeEeeHHHhcCCC
Confidence            46889999999999999999999999997 99999998654211000             000000 0112344444789


Q ss_pred             CEEEEeccCChhhh-cccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 017490          251 DVVVCCLSLNKQTA-GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC  301 (370)
Q Consensus       251 DiV~l~lP~t~~t~-~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~  301 (370)
                      |+|+.++|...... ..++.   +.++++.+++++.-.+ ..+. |++..++
T Consensus       189 DiIInaTp~gm~~~~~~l~~---~~l~~~~~V~DlvY~P-~~T~-ll~~A~~  235 (281)
T 3o8q_A          189 DVIINSTSASLDGELPAIDP---VIFSSRSVCYDMMYGK-GYTV-FNQWARQ  235 (281)
T ss_dssp             EEEEECSCCCC----CSCCG---GGEEEEEEEEESCCCS-SCCH-HHHHHHH
T ss_pred             CEEEEcCcCCCCCCCCCCCH---HHhCcCCEEEEecCCC-ccCH-HHHHHHH
Confidence            99999999753221 12343   3467788888887664 3344 3343343

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.75  E-value=1.7e-05  Score=66.47  Aligned_cols=93  Identities=11%  Similarity=0.153  Sum_probs=58.7

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCH---HHH-HhcCCEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDI---FEF-ASKADVV  253 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~el-l~~aDiV  253 (370)
                      .++.|+|+|.+|+.+|+.|+..|++|+++|+++........            .....-.+...+.   +++ +.++|+|
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~------------~g~~~i~gd~~~~~~l~~a~i~~ad~v   75 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRE------------RGVRAVLGNAANEEIMQLAHLECAKWL   75 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH------------TTCEEEESCTTSHHHHHHTTGGGCSEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH------------cCCCEEECCCCCHHHHHhcCcccCCEE
Confidence            46889999999999999999999999999997654211000            0000011122222   221 4689999


Q ss_pred             EEeccCChhhhcccCHHHHhcCCCCcEEEEc
Q 017490          254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNI  284 (370)
Q Consensus       254 ~l~lP~t~~t~~li~~~~l~~mk~gailIN~  284 (370)
                      ++++|....+..++  ..++.+.++..+|-.
T Consensus        76 i~~~~~~~~n~~~~--~~a~~~~~~~~iiar  104 (140)
T 3fwz_A           76 ILTIPNGYEAGEIV--ASARAKNPDIEIIAR  104 (140)
T ss_dssp             EECCSCHHHHHHHH--HHHHHHCSSSEEEEE
T ss_pred             EEECCChHHHHHHH--HHHHHHCCCCeEEEE
Confidence            99999766554332  344555566666643

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=97.71  E-value=0.00011  Score=72.04  Aligned_cols=131  Identities=14%  Similarity=0.180  Sum_probs=91.8

Q ss_pred             CeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEecCchhHHHHHHhccCCC-
Q 017490          123 GIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-  201 (370)
Q Consensus       123 gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-  201 (370)
                      .|+|.|+ +     -..+|=-+++.++..+|                ..|+.++..+|.|+|.|..|..+|+.+.++|. 
T Consensus       156 ~ipvf~D-D-----iqGTa~V~lAall~al~----------------l~g~~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~  213 (398)
T 2a9f_A          156 HIPVFHD-D-----QHGTAIVVLAAIFNSLK----------------LLKKSLDEVSIVVNGGGSAGLSITRKLLAAGAT  213 (398)
T ss_dssp             SSCEEEH-H-----HHHHHHHHHHHHHHHHH----------------TTTCCTTSCEEEEECCSHHHHHHHHHHHHHTCC
T ss_pred             Ccceecc-h-----hhhHHHHHHHHHHHHHH----------------HhCCCCCccEEEEECCCHHHHHHHHHHHHcCCC
Confidence            5888873 1     13455556666666665                13568899999999999999999999999999 


Q ss_pred             EEEEEcCCCcc--cc-ccccccchhhhccccccccccc---cCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcC
Q 017490          202 KIIATKRSWAS--HS-QVSCQSSALAVKNGIIDDLVDE---KGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSM  275 (370)
Q Consensus       202 ~V~~~dr~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~m  275 (370)
                      +|+.+|++.--  .. .....      ..   ..+...   .....+|++.++.+|+++-.     ++.+++.++.++.|
T Consensus       214 ~I~v~D~~Gli~~~R~~~L~~------~k---~~fa~~~~~~~~~~~L~eav~~ADV~IG~-----Sapgl~T~EmVk~M  279 (398)
T 2a9f_A          214 KVTVVDKFGIINEQEAAQLAP------HH---LDIAKVTNREFKSGTLEDALEGADIFIGV-----SAPGVLKAEWISKM  279 (398)
T ss_dssp             EEEEEETTEECCTTCCCSCCC------------CHHHHHSCTTCCCSCSHHHHTTCSEEEC-----CSTTCCCHHHHHTS
T ss_pred             eEEEEECCCcccCCccccchH------HH---HHHhhccCcccchhhHHHHhccCCEEEec-----CCCCCCCHHHHHhh
Confidence            99999987310  00 00000      00   011111   11245799999999998766     23589999999999


Q ss_pred             CCCcEEEEcCCCcc
Q 017490          276 KKGSLLVNIARGGL  289 (370)
Q Consensus       276 k~gailIN~sRg~~  289 (370)
                      +++++++.+|+...
T Consensus       280 a~~pIIfalsNPt~  293 (398)
T 2a9f_A          280 AARPVIFAMANPIP  293 (398)
T ss_dssp             CSSCEEEECCSSSC
T ss_pred             CCCCEEEECCCCCc
Confidence            99999999999654

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=97.69  E-value=2.6e-05  Score=74.52  Aligned_cols=116  Identities=19%  Similarity=0.292  Sum_probs=69.2

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEE
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  255 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  255 (370)
                      ..++|+|||.|.||..+|..|...|.+|..+ ++.+.......  ..+...... ...........++++ +..+|+|++
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~--~g~~~~~~~-~~~~~~~~~~~~~~~-~~~~D~vil   92 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEA--TGLRLETQS-FDEQVKVSASSDPSA-VQGADLVLF   92 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHH--HCEEEECSS-CEEEECCEEESCGGG-GTTCSEEEE
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHh--CCeEEEcCC-CcEEEeeeeeCCHHH-cCCCCEEEE
Confidence            4568999999999999999999999999999 65432100000  000000000 000000001234544 578999999


Q ss_pred             eccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCH-HHHHHHHH
Q 017490          256 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDY-EAIAHYLE  300 (370)
Q Consensus       256 ~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~-~aL~~aL~  300 (370)
                      ++|.. +++.++ ++....+++++++|.+..|  ++. +.+.+.+.
T Consensus        93 avk~~-~~~~~l-~~l~~~l~~~~~iv~~~nG--i~~~~~l~~~~~  134 (318)
T 3hwr_A           93 CVKST-DTQSAA-LAMKPALAKSALVLSLQNG--VENADTLRSLLE  134 (318)
T ss_dssp             CCCGG-GHHHHH-HHHTTTSCTTCEEEEECSS--SSHHHHHHHHCC
T ss_pred             Ecccc-cHHHHH-HHHHHhcCCCCEEEEeCCC--CCcHHHHHHHcC
Confidence            99965 555554 2344567889999999777  343 45555553

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=97.67  E-value=5e-05  Score=72.92  Aligned_cols=93  Identities=15%  Similarity=0.110  Sum_probs=63.6

Q ss_pred             cCceEEEEecCchhHHHHHHhcc-C-CCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEE
Q 017490          176 LGKTVFILGFGNIGVELAKRLRP-F-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  253 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~-~-G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  253 (370)
                      ..++++|||+|.+|+.+++.+.. . ..+|.+|||+..+...-..   .+.      .... ... ..++++++ ++|+|
T Consensus       124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~---~~~------~~~~-~~~-~~~~~e~v-~aDvV  191 (322)
T 1omo_A          124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVS---YCE------DRGI-SAS-VQPAEEAS-RCDVL  191 (322)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHH---HHH------HTTC-CEE-ECCHHHHT-SSSEE
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHH---HHH------hcCc-eEE-ECCHHHHh-CCCEE
Confidence            46799999999999999998875 3 3579999998654211000   000      0000 011 46788999 99999


Q ss_pred             EEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       254 ~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                      ++|+|..   ..++..   +.+++|..+++++.
T Consensus       192 i~aTp~~---~pv~~~---~~l~~G~~V~~ig~  218 (322)
T 1omo_A          192 VTTTPSR---KPVVKA---EWVEEGTHINAIGA  218 (322)
T ss_dssp             EECCCCS---SCCBCG---GGCCTTCEEEECSC
T ss_pred             EEeeCCC---CceecH---HHcCCCeEEEECCC
Confidence            9999854   355553   45799999999963

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.66  E-value=6.2e-05  Score=70.66  Aligned_cols=114  Identities=18%  Similarity=0.141  Sum_probs=68.9

Q ss_pred             cccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHH-hc
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA-SK  249 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~  249 (370)
                      +.++.|+++.|+|.|.+|++++..|...|+ +|.+++|+.++...-..             +.........+++++- .+
T Consensus       115 ~~~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~-------------~~~~~~~~~~~~~~l~~~~  181 (272)
T 3pwz_A          115 GEPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRN-------------ELDHSRLRISRYEALEGQS  181 (272)
T ss_dssp             CCCCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHH-------------HHCCTTEEEECSGGGTTCC
T ss_pred             CCCccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH-------------HhccCCeeEeeHHHhcccC
Confidence            356889999999999999999999999996 99999998654211000             0000000011222322 68


Q ss_pred             CCEEEEeccCChhhh-cccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 017490          250 ADVVVCCLSLNKQTA-GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG  302 (370)
Q Consensus       250 aDiV~l~lP~t~~t~-~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g  302 (370)
                      +|+|+.++|...... ..+..+   .++++.+++++.-.+. .+.=|.+|-+.|
T Consensus       182 ~DivInaTp~gm~~~~~~i~~~---~l~~~~~V~DlvY~P~-~T~ll~~A~~~G  231 (272)
T 3pwz_A          182 FDIVVNATSASLTADLPPLPAD---VLGEAALAYELAYGKG-LTPFLRLAREQG  231 (272)
T ss_dssp             CSEEEECSSGGGGTCCCCCCGG---GGTTCSEEEESSCSCC-SCHHHHHHHHHS
T ss_pred             CCEEEECCCCCCCCCCCCCCHH---HhCcCCEEEEeecCCC-CCHHHHHHHHCC
Confidence            999999998643211 123333   3567787777766532 333333344443

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=97.65  E-value=4.6e-05  Score=74.98  Aligned_cols=104  Identities=18%  Similarity=0.180  Sum_probs=62.2

Q ss_pred             ceEEEEecCchhHHHHHHhcc-CCCEEEEEc---CCCccccccccccchhh----hccccccccccccC-CCCCHHHHHh
Q 017490          178 KTVFILGFGNIGVELAKRLRP-FGVKIIATK---RSWASHSQVSCQSSALA----VKNGIIDDLVDEKG-CHEDIFEFAS  248 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~-~G~~V~~~d---r~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~l~ell~  248 (370)
                      ++|+|||.|.||..+|..|.. .|++|.+++   ++.......... ..+.    +..+.......... ...++++.++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   81 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGA-DELTVIVNEKDGTQTEVKSRPKVITKDPEIAIS   81 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTT-SCEEEEEECSSSCEEEEEECCSEEESCHHHHHT
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhh-ccceeeeecCCCccceeeccceEEeCCHHHHhC
Confidence            479999999999999999977 599999999   532211000000 0000    00000000000011 1246888889


Q ss_pred             cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEc
Q 017490          249 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNI  284 (370)
Q Consensus       249 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~  284 (370)
                      .+|+|++++|.. ..+.++ ++....++++++++..
T Consensus        82 ~aD~Vilav~~~-~~~~v~-~~l~~~l~~~~ivv~~  115 (404)
T 3c7a_A           82 GADVVILTVPAF-AHEGYF-QAMAPYVQDSALIVGL  115 (404)
T ss_dssp             TCSEEEECSCGG-GHHHHH-HHHTTTCCTTCEEEET
T ss_pred             CCCEEEEeCchH-HHHHHH-HHHHhhCCCCcEEEEc
Confidence            999999999954 344443 2344567889999985

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=97.65  E-value=4.5e-05  Score=72.81  Aligned_cols=121  Identities=16%  Similarity=0.200  Sum_probs=74.4

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccc-ccccCCCCCHHHHHhcCCEEEEe
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDL-VDEKGCHEDIFEFASKADVVVCC  256 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ell~~aDiV~l~  256 (370)
                      ++|+|||.|.||..+|..|...|.+|.+++|+....   .. ...+.+......+. ........+.+++.+.+|+|+++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~~~---i~-~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVila   78 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSDYET---VK-AKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLC   78 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTTHHH---HH-HHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCChHHH---HH-hCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEe
Confidence            579999999999999999999999999999874210   00 00000000000000 00000124566666689999999


Q ss_pred             ccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          257 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       257 lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      +|.. +++..+ +..-..+++++++|.+..| +-.++.+.+.+...++.
T Consensus        79 vK~~-~~~~~l-~~l~~~l~~~t~Iv~~~nG-i~~~~~l~~~~~~~~vl  124 (320)
T 3i83_A           79 IKVV-EGADRV-GLLRDAVAPDTGIVLISNG-IDIEPEVAAAFPDNEVI  124 (320)
T ss_dssp             CCCC-TTCCHH-HHHTTSCCTTCEEEEECSS-SSCSHHHHHHSTTSCEE
T ss_pred             cCCC-ChHHHH-HHHHhhcCCCCEEEEeCCC-CChHHHHHHHCCCCcEE
Confidence            9965 344433 2344567889999988876 22346677777655553

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.64  E-value=5.7e-05  Score=62.22  Aligned_cols=100  Identities=13%  Similarity=0.184  Sum_probs=58.3

Q ss_pred             cccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCCCCH---HHH-Hh
Q 017490          174 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDI---FEF-AS  248 (370)
Q Consensus       174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l---~el-l~  248 (370)
                      .+.+++++|+|+|.+|+.+++.|...|++|+++|++.........             .... ..+...+.   +++ +.
T Consensus         3 ~~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~-------------~~~~~~~~d~~~~~~l~~~~~~   69 (144)
T 2hmt_A            3 RIKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS-------------YATHAVIANATEENELLSLGIR   69 (144)
T ss_dssp             ---CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTT-------------TCSEEEECCTTCHHHHHTTTGG
T ss_pred             CCcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-------------hCCEEEEeCCCCHHHHHhcCCC
Confidence            356788999999999999999999999999999986543110000             0000 01112232   232 56


Q ss_pred             cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490          249 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       249 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~  288 (370)
                      ++|+|+.++|...++. +.-....+.+.+. .+|-.+++.
T Consensus        70 ~~d~vi~~~~~~~~~~-~~~~~~~~~~~~~-~ii~~~~~~  107 (144)
T 2hmt_A           70 NFEYVIVAIGANIQAS-TLTTLLLKELDIP-NIWVKAQNY  107 (144)
T ss_dssp             GCSEEEECCCSCHHHH-HHHHHHHHHTTCS-EEEEECCSH
T ss_pred             CCCEEEECCCCchHHH-HHHHHHHHHcCCC-eEEEEeCCH
Confidence            8999999998642221 1112334455665 455444443

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.64  E-value=0.00012  Score=69.05  Aligned_cols=120  Identities=15%  Similarity=0.103  Sum_probs=72.3

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCC
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  251 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  251 (370)
                      ..++|+++.|+|.|.+|+.++..|...|+ +|.+++|+..+......   .+....   ..........+++++.++++|
T Consensus       123 ~~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~---~~~~~~---~~~~i~~~~~~~l~~~l~~~D  196 (283)
T 3jyo_A          123 PNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALAD---VINNAV---GREAVVGVDARGIEDVIAAAD  196 (283)
T ss_dssp             TTCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHH---HHHHHH---TSCCEEEECSTTHHHHHHHSS
T ss_pred             cCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH---HHHhhc---CCceEEEcCHHHHHHHHhcCC
Confidence            35889999999999999999999999999 79999998654211000   000000   000000012357888899999


Q ss_pred             EEEEeccCChhhh--cccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 017490          252 VVVCCLSLNKQTA--GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG  302 (370)
Q Consensus       252 iV~l~lP~t~~t~--~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g  302 (370)
                      +|+.++|..-...  -.++.   ..++++.+++++.-.+. .+.=|.+|-+.|
T Consensus       197 iVInaTp~Gm~~~~~~pi~~---~~l~~~~~v~DlvY~P~-~T~ll~~A~~~G  245 (283)
T 3jyo_A          197 GVVNATPMGMPAHPGTAFDV---SCLTKDHWVGDVVYMPI-ETELLKAARALG  245 (283)
T ss_dssp             EEEECSSTTSTTSCSCSSCG---GGCCTTCEEEECCCSSS-SCHHHHHHHHHT
T ss_pred             EEEECCCCCCCCCCCCCCCH---HHhCCCCEEEEecCCCC-CCHHHHHHHHCc
Confidence            9999998632111  12332   34667777777765442 333333343333

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=97.63  E-value=0.00018  Score=68.08  Aligned_cols=125  Identities=19%  Similarity=0.279  Sum_probs=85.3

Q ss_pred             cccccCceEEEEecCc-hhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490          172 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  250 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~-IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  250 (370)
                      +.+++||++.|||-+. +|+++|..|...|+.|......                              ..++.+..++|
T Consensus       174 ~i~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~------------------------------T~dl~~~~~~A  223 (303)
T 4b4u_A          174 NIEIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSR------------------------------TQNLPELVKQA  223 (303)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT------------------------------CSSHHHHHHTC
T ss_pred             CCCCCCCEEEEEeccccccchHHHHHHhcCCEEEEecCC------------------------------CCCHHHHhhcC
Confidence            4689999999999865 5999999999999999987542                              13688999999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceE
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL  330 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi  330 (370)
                      |+|+.++..    .+++..++   .|+|+++||++--.           .++++.   -||-..+       ... ---.
T Consensus       224 DIvV~A~G~----p~~i~~d~---vk~GavVIDVGin~-----------~~~~~v---GDVdf~~-------v~~-~a~~  274 (303)
T 4b4u_A          224 DIIVGAVGK----AELIQKDW---IKQGAVVVDAGFHP-----------RDGGGV---GDIQLQG-------IEE-IASA  274 (303)
T ss_dssp             SEEEECSCS----TTCBCGGG---SCTTCEEEECCCBC-----------CTTSCB---CSBCCTT-------GGG-TCSE
T ss_pred             CeEEeccCC----CCcccccc---ccCCCEEEEeceec-----------CCCCeE---CCcCHHH-------Hhh-hCcE
Confidence            999998763    35787765   68999999998532           123442   3663222       111 1235


Q ss_pred             EccCCCCccHHHHHHHHHHHHHHHH
Q 017490          331 ITPHVGGVTEHSYRSMAKVVGDVAL  355 (370)
Q Consensus       331 lTPHia~~t~~~~~~~~~~~~~ni~  355 (370)
                      +||==||.-+-+..-+.+.+++..+
T Consensus       275 iTPVPGGVGPmTiamLl~Ntv~aa~  299 (303)
T 4b4u_A          275 YTPVPGGVGPMTITTLIRQTVEAAE  299 (303)
T ss_dssp             ECCSSSSHHHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCchHHHHHHHHHHHHHHHH
Confidence            7997677655444444444444333

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=97.60  E-value=0.00013  Score=61.50  Aligned_cols=103  Identities=12%  Similarity=0.181  Sum_probs=70.2

Q ss_pred             CceEEEEec----CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCE
Q 017490          177 GKTVFILGF----GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  252 (370)
Q Consensus       177 g~tvGIiGl----G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  252 (370)
                      -++|+|||.    |.+|..+++.++..|++|+..++.....                  +. .....+.+++++-...|+
T Consensus        13 p~~vaVvGas~~~g~~G~~~~~~l~~~G~~v~~vnp~~~~~------------------~i-~G~~~~~sl~el~~~vDl   73 (140)
T 1iuk_A           13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGE------------------EL-FGEEAVASLLDLKEPVDI   73 (140)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTS------------------EE-TTEECBSSGGGCCSCCSE
T ss_pred             CCEEEEECCCCCCCChHHHHHHHHHHCCCEEEEeCCCcccC------------------cC-CCEEecCCHHHCCCCCCE
Confidence            468999999    8999999999999999977766541010                  00 000134678787778999


Q ss_pred             EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      +++++|. +....+++ +..+. ..++++++.+-.    ++++.+..++..+.
T Consensus        74 avi~vp~-~~~~~v~~-~~~~~-gi~~i~~~~g~~----~~~~~~~a~~~Gir  119 (140)
T 1iuk_A           74 LDVFRPP-SALMDHLP-EVLAL-RPGLVWLQSGIR----HPEFEKALKEAGIP  119 (140)
T ss_dssp             EEECSCH-HHHTTTHH-HHHHH-CCSCEEECTTCC----CHHHHHHHHHTTCC
T ss_pred             EEEEeCH-HHHHHHHH-HHHHc-CCCEEEEcCCcC----HHHHHHHHHHcCCE
Confidence            9999996 66666664 33332 334566654332    57888888887665

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.60  E-value=3.8e-05  Score=61.16  Aligned_cols=95  Identities=14%  Similarity=0.171  Sum_probs=58.9

Q ss_pred             cCceEEEEecCchhHHHHHHhccCC-CEEEEEcCCCccccccccccchhhhccccccccc-cccCCCCCHHHHHhcCCEE
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV-DEKGCHEDIFEFASKADVV  253 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~~aDiV  253 (370)
                      .+++|+|+|.|.||+.+++.|...| ++|++++|++.+......        .+  .... .......+++++++.+|+|
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~--------~~--~~~~~~d~~~~~~~~~~~~~~d~v   73 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNR--------MG--VATKQVDAKDEAGLAKALGGFDAV   73 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHT--------TT--CEEEECCTTCHHHHHHHTTTCSEE
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHh--------CC--CcEEEecCCCHHHHHHHHcCCCEE
Confidence            4679999999999999999999999 899999997543110000        00  0000 0000123466778899999


Q ss_pred             EEeccCChhhhcccCHHHHhcCCCCcEEEEcC
Q 017490          254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       254 ~l~lP~t~~t~~li~~~~l~~mk~gailIN~s  285 (370)
                      +.++|... +..++.    ...+.|...++.+
T Consensus        74 i~~~~~~~-~~~~~~----~~~~~g~~~~~~~  100 (118)
T 3ic5_A           74 ISAAPFFL-TPIIAK----AAKAAGAHYFDLT  100 (118)
T ss_dssp             EECSCGGG-HHHHHH----HHHHTTCEEECCC
T ss_pred             EECCCchh-hHHHHH----HHHHhCCCEEEec
Confidence            99987432 222221    1134577777765

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.58  E-value=3.7e-05  Score=63.96  Aligned_cols=37  Identities=24%  Similarity=0.332  Sum_probs=32.9

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      .++++.|+|+|.+|+.+|+.|...|++|+++|+++..
T Consensus         5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~   41 (141)
T 3llv_A            5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEK   41 (141)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHH
Confidence            4578999999999999999999999999999987543

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=97.57  E-value=0.0001  Score=70.71  Aligned_cols=135  Identities=11%  Similarity=0.029  Sum_probs=82.7

Q ss_pred             CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccc-cchhh--hccccccc------cccccCCCCCHHHHH
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSALA--VKNGIIDD------LVDEKGCHEDIFEFA  247 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~-~~~~~--~~~~~~~~------~~~~~~~~~~l~ell  247 (370)
                      -.+|+|||.|.||+.+|..+...|++|+.||+++......... ...+.  ...+....      .........++++.+
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a~   85 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEAV   85 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHHT
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhHh
Confidence            4689999999999999999999999999999876431110000 00000  00000000      000011235788999


Q ss_pred             hcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCC
Q 017490          248 SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWT  314 (370)
Q Consensus       248 ~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~  314 (370)
                      +.||+|+=++|-+-+.+.=+-++.=+.++++++|-...++  +....|.+.+.. .=+..++=.|.+
T Consensus        86 ~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSs--l~is~ia~~~~~-p~r~ig~HffNP  149 (319)
T 3ado_A           86 EGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSC--LLPSKLFTGLAH-VKQCIVAHPVNP  149 (319)
T ss_dssp             TTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSS--CCHHHHHTTCTT-GGGEEEEEECSS
T ss_pred             ccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhh--ccchhhhhhccC-CCcEEEecCCCC
Confidence            9999999999988776664445555668999887544333  455667666543 333345544443

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=97.56  E-value=0.00012  Score=69.67  Aligned_cols=119  Identities=18%  Similarity=0.173  Sum_probs=73.1

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccc-ccccCCCCCHHHHHhcCCEEEEe
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDL-VDEKGCHEDIFEFASKADVVVCC  256 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ell~~aDiV~l~  256 (370)
                      ++|+|||.|.||..+|..|...|.+|..++|+...  . ... ..+...... ... ........+.++ +..+|+|+++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~~--~-i~~-~g~~~~~~~-g~~~~~~~~~~~~~~~-~~~~D~vila   76 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRDYE--A-IAG-NGLKVFSIN-GDFTLPHVKGYRAPEE-IGPMDLVLVG   76 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTTHH--H-HHH-TCEEEEETT-CCEEESCCCEESCHHH-HCCCSEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCcHH--H-HHh-CCCEEEcCC-CeEEEeeceeecCHHH-cCCCCEEEEe
Confidence            57999999999999999999999999999986421  0 000 000000000 000 000001134544 6789999999


Q ss_pred             ccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccC-HHHHHHHHHhCCceE
Q 017490          257 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLD-YEAIAHYLECGHLGG  306 (370)
Q Consensus       257 lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd-~~aL~~aL~~g~i~g  306 (370)
                      +|.. +++..+ +..-..+++++++|.+.-|  ++ ++.|.+.+...++.+
T Consensus        77 vk~~-~~~~~l-~~l~~~l~~~~~iv~l~nG--i~~~~~l~~~~~~~~v~~  123 (312)
T 3hn2_A           77 LKTF-ANSRYE-ELIRPLVEEGTQILTLQNG--LGNEEALATLFGAERIIG  123 (312)
T ss_dssp             CCGG-GGGGHH-HHHGGGCCTTCEEEECCSS--SSHHHHHHHHTCGGGEEE
T ss_pred             cCCC-CcHHHH-HHHHhhcCCCCEEEEecCC--CCcHHHHHHHCCCCcEEE
Confidence            9954 344443 2344567889999999877  44 566777776555544

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=97.55  E-value=0.00018  Score=60.92  Aligned_cols=103  Identities=13%  Similarity=0.074  Sum_probs=70.6

Q ss_pred             CceEEEEec----CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCE
Q 017490          177 GKTVFILGF----GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  252 (370)
Q Consensus       177 g~tvGIiGl----G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  252 (370)
                      -++|+|||.    |.+|..+++.|+..|++|+..++....                  .....   .+.+++++....|+
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vnp~~~~------------------i~G~~---~y~sl~~l~~~vDl   80 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEE------------------VLGRK---CYPSVLDIPDKIEV   80 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE------------------ETTEE---CBSSGGGCSSCCSE
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEECCCCCe------------------ECCee---ccCCHHHcCCCCCE
Confidence            468999999    799999999999999997777664211                  00111   34678888778999


Q ss_pred             EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEE
Q 017490          253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGL  307 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga  307 (370)
                      +++++|. +....++. +..+. ..+++++..+  .  .++++.+.+++..+.-.
T Consensus        81 vvi~vp~-~~~~~vv~-~~~~~-gi~~i~~~~g--~--~~~~l~~~a~~~Gi~vv  128 (144)
T 2d59_A           81 VDLFVKP-KLTMEYVE-QAIKK-GAKVVWFQYN--T--YNREASKKADEAGLIIV  128 (144)
T ss_dssp             EEECSCH-HHHHHHHH-HHHHH-TCSEEEECTT--C--CCHHHHHHHHHTTCEEE
T ss_pred             EEEEeCH-HHHHHHHH-HHHHc-CCCEEEECCC--c--hHHHHHHHHHHcCCEEE
Confidence            9999995 55555653 33332 2345655533  2  37888888888777633

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.53  E-value=0.0001  Score=69.49  Aligned_cols=107  Identities=18%  Similarity=0.207  Sum_probs=69.7

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhc
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASK  249 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~  249 (370)
                      .++.|+++.|+|.|.+|++++..|...|+ +|.+++|+..+..                 ++.....  .+.++++ + +
T Consensus       118 ~~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~-----------------~La~~~~~~~~~~l~~-l-~  178 (282)
T 3fbt_A          118 VEIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTS-----------------EIYGEFKVISYDELSN-L-K  178 (282)
T ss_dssp             CCCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHH-----------------HHCTTSEEEEHHHHTT-C-C
T ss_pred             CCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHH-----------------HHHHhcCcccHHHHHh-c-c
Confidence            45789999999999999999999999999 8999999865421                 1111110  1223334 4 8


Q ss_pred             CCEEEEeccCC--hhhh-cccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 017490          250 ADVVVCCLSLN--KQTA-GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG  302 (370)
Q Consensus       250 aDiV~l~lP~t--~~t~-~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g  302 (370)
                      +|+|+.++|.-  +... -.++.+.   ++++.+++++.-.+. .+.=|.+|-+.|
T Consensus       179 ~DivInaTp~Gm~~~~~~~pi~~~~---l~~~~~v~DlvY~P~-~T~ll~~A~~~G  230 (282)
T 3fbt_A          179 GDVIINCTPKGMYPKEGESPVDKEV---VAKFSSAVDLIYNPV-ETLFLKYARESG  230 (282)
T ss_dssp             CSEEEECSSTTSTTSTTCCSSCHHH---HTTCSEEEESCCSSS-SCHHHHHHHHTT
T ss_pred             CCEEEECCccCccCCCccCCCCHHH---cCCCCEEEEEeeCCC-CCHHHHHHHHCc
Confidence            99999999863  2211 1245444   467888888876543 333333343333

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.42  E-value=2.6e-05  Score=72.11  Aligned_cols=124  Identities=22%  Similarity=0.247  Sum_probs=70.3

Q ss_pred             HHHHHHhcccCCCCcccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCcccc----------------cccccc
Q 017490          158 MRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHS----------------QVSCQS  220 (370)
Q Consensus       158 ~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~----------------~~~~~~  220 (370)
                      |.++++-..|+......|.+++|.|||+|.+|..+|+.|...|. +|..+|+..-...                +.....
T Consensus        12 y~Rq~~l~~~g~~~q~~l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~   91 (249)
T 1jw9_B           12 YNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESAR   91 (249)
T ss_dssp             THHHHTSTTTHHHHHHHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHH
T ss_pred             hhheecccccCHHHHHHHhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHH
Confidence            33333333354333356899999999999999999999999998 8999998752100                000000


Q ss_pred             chhhhcccccc-ccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcC
Q 017490          221 SALAVKNGIID-DLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       221 ~~~~~~~~~~~-~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~s  285 (370)
                      ..+...+.... ..........+++++++++|+|+.+++ +.+++.+++....+.   |..+|+.+
T Consensus        92 ~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d-~~~~~~~l~~~~~~~---~~p~i~~~  153 (249)
T 1jw9_B           92 DALTRINPHIAITPVNALLDDAELAALIAEHDLVLDCTD-NVAVRNQLNAGCFAA---KVPLVSGA  153 (249)
T ss_dssp             HHHHHHCTTSEEEEECSCCCHHHHHHHHHTSSEEEECCS-SHHHHHHHHHHHHHH---TCCEEEEE
T ss_pred             HHHHHHCCCcEEEEEeccCCHhHHHHHHhCCCEEEEeCC-CHHHHHHHHHHHHHc---CCCEEEee
Confidence            00000000000 000000011245678889999999986 567777777654443   34466543

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=97.41  E-value=0.00011  Score=69.25  Aligned_cols=118  Identities=12%  Similarity=0.127  Sum_probs=69.8

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCE
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  252 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  252 (370)
                      .++.|+++.|+|.|.||+++|+.|...| +|++++|+..+......   .+.....  ...... ....++.+.+.++|+
T Consensus       124 ~~l~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~---~~~~~~~--~~~~~~-~d~~~~~~~~~~~Di  196 (287)
T 1nvt_A          124 GRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAK---EIAEKLN--KKFGEE-VKFSGLDVDLDGVDI  196 (287)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHH---HHHHHHT--CCHHHH-EEEECTTCCCTTCCE
T ss_pred             CCcCCCEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHH---HHhhhcc--ccccee-EEEeeHHHhhCCCCE
Confidence            3578999999999999999999999999 99999997543111000   0000000  000000 001122445678999


Q ss_pred             EEEeccCChhh--hc-cc-CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 017490          253 VVCCLSLNKQT--AG-IV-NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG  302 (370)
Q Consensus       253 V~l~lP~t~~t--~~-li-~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g  302 (370)
                      |+++.|.....  .. .+ +   .+.++++.+++|++..+. .+ .|.+..++.
T Consensus       197 lVn~ag~~~~~~~~~~~~~~---~~~l~~~~~v~Dv~y~p~-~t-~ll~~a~~~  245 (287)
T 1nvt_A          197 IINATPIGMYPNIDVEPIVK---AEKLREDMVVMDLIYNPL-ET-VLLKEAKKV  245 (287)
T ss_dssp             EEECSCTTCTTCCSSCCSSC---STTCCSSSEEEECCCSSS-SC-HHHHHHHTT
T ss_pred             EEECCCCCCCCCCCCCCCCC---HHHcCCCCEEEEeeeCCc-cC-HHHHHHHHC
Confidence            99999864321  10 12 2   345788999999987543 23 344444443

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=97.40  E-value=0.00014  Score=68.67  Aligned_cols=107  Identities=14%  Similarity=0.140  Sum_probs=67.3

Q ss_pred             CceEEEEecCchhHH-HHHHhcc-CCCEEE-EEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCC
Q 017490          177 GKTVFILGFGNIGVE-LAKRLRP-FGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKAD  251 (370)
Q Consensus       177 g~tvGIiGlG~IG~~-vA~~l~~-~G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aD  251 (370)
                      -.++||||+|.||+. +++.++. -|+++. ++|++..+..                 .....++  .+.++++++.+.|
T Consensus         6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~-----------------~~a~~~~~~~~~~~~~ll~~~D   68 (308)
T 3uuw_A            6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKRE-----------------KICSDYRIMPFDSIESLAKKCD   68 (308)
T ss_dssp             CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHH-----------------HHHHHHTCCBCSCHHHHHTTCS
T ss_pred             cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHH-----------------HHHHHcCCCCcCCHHHHHhcCC
Confidence            368999999999996 8888876 578877 6888754321                 1111212  2578999999999


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCc-EEEE-cCCCcccCHHHHHHHHHhCCce
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGS-LLVN-IARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~ga-ilIN-~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      +|++++|...... +    ....++.|. +++. -.--.+-+.++|.++.++..+.
T Consensus        69 ~V~i~tp~~~h~~-~----~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~~  119 (308)
T 3uuw_A           69 CIFLHSSTETHYE-I----IKILLNLGVHVYVDKPLASTVSQGEELIELSTKKNLN  119 (308)
T ss_dssp             EEEECCCGGGHHH-H----HHHHHHTTCEEEECSSSSSSHHHHHHHHHHHHHHTCC
T ss_pred             EEEEeCCcHhHHH-H----HHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHcCCE
Confidence            9999999543222 1    122234443 3332 2233444566677777775543

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=97.40  E-value=9.7e-05  Score=70.52  Aligned_cols=118  Identities=12%  Similarity=0.061  Sum_probs=68.2

Q ss_pred             CceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEE
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  255 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  255 (370)
                      .++|+|||.|.||..+|..+...|+ +|..+|++........   .++...... ...........++ +.++.||+|++
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~---~~l~~~~~~-~~~~~~i~~t~d~-~a~~~aDiVi~   78 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKA---LDITHSMVM-FGSTSKVIGTDDY-ADISGSDVVII   78 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHH---HHHHHHHHH-HTCCCCEEEESCG-GGGTTCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHH---HHHHhhhhh-cCCCcEEEECCCH-HHhCCCCEEEE
Confidence            3689999999999999999988888 9999999764321100   000000000 0000000011456 67899999999


Q ss_pred             eccCCh-----------hhhcccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 017490          256 CLSLNK-----------QTAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYL  299 (370)
Q Consensus       256 ~lP~t~-----------~t~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL  299 (370)
                      +++...           ++..++.  .+.+....|++++|+++.+.-+....+.+..
T Consensus        79 avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp~~~~~~~~~~~~  135 (317)
T 2ewd_A           79 TASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLDVMVSHFQKVS  135 (317)
T ss_dssp             CCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHH
T ss_pred             eCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHhh
Confidence            984211           1111110  0122333579999999887655555666654

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.39  E-value=0.00029  Score=67.46  Aligned_cols=111  Identities=11%  Similarity=0.091  Sum_probs=65.6

Q ss_pred             cccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCC---CHHHHH
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHE---DIFEFA  247 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~ell  247 (370)
                      +..++|+++.|+|.|.+|++++..|...|+ +|.+++|+.+...........+....+    ........+   ++.+.+
T Consensus       149 ~~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~----~~~~~~~~~~~~~l~~~l  224 (315)
T 3tnl_A          149 GHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTD----CKAQLFDIEDHEQLRKEI  224 (315)
T ss_dssp             TCCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSS----CEEEEEETTCHHHHHHHH
T ss_pred             CCCccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcC----CceEEeccchHHHHHhhh
Confidence            356899999999999999999999999999 899999983211100000000000000    000001122   355678


Q ss_pred             hcCCEEEEeccCC--hhhh-cccCHHHHhcCCCCcEEEEcCCCc
Q 017490          248 SKADVVVCCLSLN--KQTA-GIVNKSFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       248 ~~aDiV~l~lP~t--~~t~-~li~~~~l~~mk~gailIN~sRg~  288 (370)
                      .++|+|+.++|..  +... ..+.  ....++++.+++++.-.+
T Consensus       225 ~~aDiIINaTp~Gm~~~~~~~p~~--~~~~l~~~~~V~DlvY~P  266 (315)
T 3tnl_A          225 AESVIFTNATGVGMKPFEGETLLP--SADMLRPELIVSDVVYKP  266 (315)
T ss_dssp             HTCSEEEECSSTTSTTSTTCCSCC--CGGGCCTTCEEEESCCSS
T ss_pred             cCCCEEEECccCCCCCCCCCCCCC--cHHHcCCCCEEEEeccCC
Confidence            8999999999853  1111 1121  123467777777776554

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=97.34  E-value=4.8e-05  Score=71.74  Aligned_cols=98  Identities=14%  Similarity=0.117  Sum_probs=63.1

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHH-hcCCEEEEe
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA-SKADVVVCC  256 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV~l~  256 (370)
                      ++|+|||.|.||..+|..|...|.+|.+++|+.......  .      .++    .... ....+..+.+ ..+|+|+++
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~--~------~~g----~~~~-~~~~~~~~~~~~~~D~vila   69 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYY--T------VPH----APAQ-DIVVKGYEDVTNTFDVIIIA   69 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEE--S------STT----SCCE-EEEEEEGGGCCSCEEEEEEC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEE--e------cCC----eecc-ceecCchHhcCCCCCEEEEe
Confidence            579999999999999999998899999999974331100  0      000    0000 0001223333 789999999


Q ss_pred             ccCChhhhcccCHHHHhcCCCCcEEEEcCCCccc
Q 017490          257 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLL  290 (370)
Q Consensus       257 lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~v  290 (370)
                      +|.. +++..+. +.-..+++++++|.+.-|=-.
T Consensus        70 vk~~-~~~~~l~-~l~~~l~~~~~iv~~~nGi~~  101 (294)
T 3g17_A           70 VKTH-QLDAVIP-HLTYLAHEDTLIILAQNGYGQ  101 (294)
T ss_dssp             SCGG-GHHHHGG-GHHHHEEEEEEEEECCSSCCC
T ss_pred             CCcc-CHHHHHH-HHHHhhCCCCEEEEeccCccc
Confidence            9954 4555443 333446788899999887433

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=97.33  E-value=0.00047  Score=68.82  Aligned_cols=118  Identities=15%  Similarity=0.219  Sum_probs=80.7

Q ss_pred             cccccCceEEEEecCchhHHHHHHhccCCC---EEEEEc----CC--Ccccccc--ccccchhhhccccccccccccC--
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLRPFGV---KIIATK----RS--WASHSQV--SCQSSALAVKNGIIDDLVDEKG--  238 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~---~V~~~d----r~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--  238 (370)
                      +..++++++.|+|.|..|+.+++.|...|.   +|+++|    |+  ..+....  ..   .+.      ........  
T Consensus       181 g~~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~---~~~------~~~a~~~~~~  251 (439)
T 2dvm_A          181 GKKISEITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLF---PYR------GWLLKKTNGE  251 (439)
T ss_dssp             TCCTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHS---TTC------HHHHTTSCTT
T ss_pred             CCCccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHH---HHH------HHHhhccccc
Confidence            456889999999999999999999999998   799999    76  2221000  00   000      00011000  


Q ss_pred             -CCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 017490          239 -CHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGH  303 (370)
Q Consensus       239 -~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~  303 (370)
                       ...++.+.++++|+|+.+.|..+   +++..+.++.|+++.++++++...  .|.-+.+|.+.|.
T Consensus       252 ~~~~~L~e~l~~aDVlInaT~~~~---G~~~~e~v~~m~~~~iVfDLynP~--~t~~~~~A~~~G~  312 (439)
T 2dvm_A          252 NIEGGPQEALKDADVLISFTRPGP---GVIKPQWIEKMNEDAIVFPLANPV--PEILPEEAKKAGA  312 (439)
T ss_dssp             CCCSSHHHHHTTCSEEEECSCCCS---SSSCHHHHTTSCTTCEEEECCSSS--CSSCHHHHHHHTC
T ss_pred             cccccHHHHhccCCEEEEcCCCcc---CCCChHHHHhcCCCCEEEECCCCC--CcchHHHHHHcCC
Confidence             23578899999999999977532   466667888999999999995543  4555555656564

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=97.25  E-value=0.00038  Score=66.06  Aligned_cols=106  Identities=15%  Similarity=0.135  Sum_probs=66.6

Q ss_pred             ceEEEEecCchhHH-HHHHhcc-CCCEEE-EEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCCE
Q 017490          178 KTVFILGFGNIGVE-LAKRLRP-FGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADV  252 (370)
Q Consensus       178 ~tvGIiGlG~IG~~-vA~~l~~-~G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDi  252 (370)
                      .+|||||+|.||+. +++.++. -|+++. ++|++.....                 ......+  .+.+++++..++|+
T Consensus         6 ~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~-----------------~~~~~~g~~~~~~~~~l~~~~D~   68 (319)
T 1tlt_A            6 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKAL-----------------PICESWRIPYADSLSSLAASCDA   68 (319)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHH-----------------HHHHHHTCCBCSSHHHHHTTCSE
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHH-----------------HHHHHcCCCccCcHHHhhcCCCE
Confidence            58999999999997 8887765 478876 8888765421                 1111111  24567777678999


Q ss_pred             EEEeccCChhhhcccCHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHhCCce
Q 017490          253 VVCCLSLNKQTAGIVNKSFLSSMKKGS-LLVNI-ARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~~l~~mk~ga-ilIN~-sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      |++++|......     -....++.|. +++.- .-..+-+.++|.++.++..+.
T Consensus        69 V~i~tp~~~h~~-----~~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~  118 (319)
T 1tlt_A           69 VFVHSSTASHFD-----VVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLT  118 (319)
T ss_dssp             EEECSCTTHHHH-----HHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCC
T ss_pred             EEEeCCchhHHH-----HHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence            999999543221     1222345565 45542 223344566788888877665

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=97.21  E-value=0.00021  Score=67.94  Aligned_cols=107  Identities=20%  Similarity=0.121  Sum_probs=60.6

Q ss_pred             ceEEEEecCchhHHHHHHhccCC--CEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  255 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G--~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  255 (370)
                      ++|+|||.|.||..+|..|...|  .+|..+|++........ .  ++........... . ....++ +.++.||+|++
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~-~--~l~~~~~~~~~~~-~-~~~~d~-~~~~~aDvVii   75 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQ-I--DFQDAMANLEAHG-N-IVINDW-AALADADVVIS   75 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHH-H--HHHHHGGGSSSCC-E-EEESCG-GGGTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHH-H--HHHhhhhhcCCCe-E-EEeCCH-HHhCCCCEEEE
Confidence            47999999999999999998778  69999999754311100 0  0000000000000 0 002355 67889999999


Q ss_pred             eccCChh---hhccc-------C----HH---HHhcCCCCcEEEEcCCCccc
Q 017490          256 CLSLNKQ---TAGIV-------N----KS---FLSSMKKGSLLVNIARGGLL  290 (370)
Q Consensus       256 ~lP~t~~---t~~li-------~----~~---~l~~mk~gailIN~sRg~~v  290 (370)
                      ++|....   |.++-       |    .+   .+....|++++|+++.+--+
T Consensus        76 av~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~~  127 (309)
T 1hyh_A           76 TLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVDV  127 (309)
T ss_dssp             CCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHH
T ss_pred             ecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCcHHH
Confidence            9986431   01110       0    12   23333568889888765433

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=97.20  E-value=0.00012  Score=69.57  Aligned_cols=115  Identities=14%  Similarity=0.169  Sum_probs=63.5

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEec
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  257 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  257 (370)
                      ++|+|||.|.||..+|..|. .|.+|.+++|+......-..  ..+...... .....   ....-.+....+|+|++++
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~--~G~~~~~~~-~~~~~---~~~~~~~~~~~~D~vilav   75 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQS--EGIRLYKGG-EEFRA---DCSADTSINSDFDLLVVTV   75 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHH--HCEEEEETT-EEEEE---CCEEESSCCSCCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHh--CCceEecCC-Ceecc---cccccccccCCCCEEEEEe
Confidence            58999999999999999999 89999999987532100000  000000000 00000   0000023456899999999


Q ss_pred             cCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 017490          258 SLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHL  304 (370)
Q Consensus       258 P~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i  304 (370)
                      |.. +++..+  +.++.+.+++ +|.+.-|=- .++.|.+.+-..++
T Consensus        76 K~~-~~~~~l--~~l~~~~~~~-ivs~~nGi~-~~e~l~~~~~~~~v  117 (307)
T 3ego_A           76 KQH-QLQSVF--SSLERIGKTN-ILFLQNGMG-HIHDLKDWHVGHSI  117 (307)
T ss_dssp             CGG-GHHHHH--HHTTSSCCCE-EEECCSSSH-HHHHHHTCCCSCEE
T ss_pred             CHH-HHHHHH--HHhhcCCCCe-EEEecCCcc-HHHHHHHhCCCCcE
Confidence            853 344433  3344455666 888777632 22344444333334

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=97.19  E-value=0.0004  Score=67.83  Aligned_cols=39  Identities=31%  Similarity=0.365  Sum_probs=35.6

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      .-+.|++|+|+|.|.+|+.+++.++.+|++|+++|+++.
T Consensus        10 ~~~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~   48 (389)
T 3q2o_A           10 IILPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKN   48 (389)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCC
Confidence            447899999999999999999999999999999998654

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=97.19  E-value=0.00024  Score=68.53  Aligned_cols=66  Identities=11%  Similarity=0.162  Sum_probs=49.3

Q ss_pred             ceEEEEecCchhHHHHHHhccC-CCEEE-EEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHH--hcCC
Q 017490          178 KTVFILGFGNIGVELAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFA--SKAD  251 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~-G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell--~~aD  251 (370)
                      .+|||||+|.||+..++.++.. |++|. ++|++.....                 ......+  .+.++++++  .+.|
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~-----------------~~~~~~g~~~~~~~~~~l~~~~~D   68 (354)
T 3db2_A            6 VGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKRE-----------------KFGKRYNCAGDATMEALLAREDVE   68 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHH-----------------HHHHHHTCCCCSSHHHHHHCSSCC
T ss_pred             ceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHH-----------------HHHHHcCCCCcCCHHHHhcCCCCC
Confidence            5899999999999999999887 88865 6788654311                 1111212  357899999  5699


Q ss_pred             EEEEeccCC
Q 017490          252 VVVCCLSLN  260 (370)
Q Consensus       252 iV~l~lP~t  260 (370)
                      +|++++|..
T Consensus        69 ~V~i~tp~~   77 (354)
T 3db2_A           69 MVIITVPND   77 (354)
T ss_dssp             EEEECSCTT
T ss_pred             EEEEeCChH
Confidence            999999964

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=97.16  E-value=0.00019  Score=68.13  Aligned_cols=106  Identities=15%  Similarity=0.160  Sum_probs=64.4

Q ss_pred             ceEEEEecCchhHHHHHHhccC-CCEE-EEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHh--cCCEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPF-GVKI-IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADVV  253 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~-G~~V-~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV  253 (370)
                      .+|||||+|.||+.+++.++.. ++++ .++|+++....                 ........+.+++++++  ++|+|
T Consensus        11 ~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~-----------------~~~~~~~~~~~~~~~l~~~~~D~V   73 (315)
T 3c1a_A           11 VRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLA-----------------LVPPGCVIESDWRSVVSAPEVEAV   73 (315)
T ss_dssp             EEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHT-----------------TCCTTCEEESSTHHHHTCTTCCEE
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHH-----------------HHHhhCcccCCHHHHhhCCCCCEE
Confidence            4799999999999999998775 6775 47887654311                 11111112467889885  79999


Q ss_pred             EEeccCChhhhcccCHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHhCCce
Q 017490          254 VCCLSLNKQTAGIVNKSFLSSMKKGS-LLVNI-ARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       254 ~l~lP~t~~t~~li~~~~l~~mk~ga-ilIN~-sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      ++++|...... +    ..+.++.|. +++.- .--.+-+.++|.++.++..+.
T Consensus        74 ~i~tp~~~h~~-~----~~~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~~  122 (315)
T 3c1a_A           74 IIATPPATHAE-I----TLAAIASGKAVLVEKPLTLDLAEAEAVAAAAKATGVM  122 (315)
T ss_dssp             EEESCGGGHHH-H----HHHHHHTTCEEEEESSSCSCHHHHHHHHHHHHHHCCC
T ss_pred             EEeCChHHHHH-H----HHHHHHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCCE
Confidence            99998542211 1    122345564 44442 122333445677777665443

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=97.16  E-value=0.00019  Score=68.93  Aligned_cols=66  Identities=15%  Similarity=0.180  Sum_probs=49.0

Q ss_pred             ceEEEEecCchhHHHHHHhccC-CCEEE-EEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHh--cCC
Q 017490          178 KTVFILGFGNIGVELAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS--KAD  251 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~-G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~--~aD  251 (370)
                      .+|||||+|.||+..++.++.. +++|. ++|++.....                 ......+  .+.++++++.  +.|
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~-----------------~~a~~~g~~~~~~~~~~l~~~~~D   67 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQ-----------------RLAEANGAEAVASPDEVFARDDID   67 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHH-----------------HHHHTTTCEEESSHHHHTTCSCCC
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHH-----------------HHHHHcCCceeCCHHHHhcCCCCC
Confidence            4799999999999999998865 77876 6887654311                 1111222  3578999998  899


Q ss_pred             EEEEeccCC
Q 017490          252 VVVCCLSLN  260 (370)
Q Consensus       252 iV~l~lP~t  260 (370)
                      +|++++|..
T Consensus        68 ~V~i~tp~~   76 (344)
T 3euw_A           68 GIVIGSPTS   76 (344)
T ss_dssp             EEEECSCGG
T ss_pred             EEEEeCCch
Confidence            999999854

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=97.14  E-value=0.00021  Score=68.25  Aligned_cols=66  Identities=21%  Similarity=0.246  Sum_probs=48.8

Q ss_pred             ceEEEEecCchhHHHHHHhccC-CCEEE-EEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHh--cCCE
Q 017490          178 KTVFILGFGNIGVELAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFAS--KADV  252 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~-G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~--~aDi  252 (370)
                      .+|||||+|.||+..++.+... +++|. ++|+++....                 ......+ .+.+++++++  +.|+
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~-----------------~~~~~~~~~~~~~~~~l~~~~~D~   66 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAE-----------------AIAGAYGCEVRTIDAIEAAADIDA   66 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHH-----------------HHHHHTTCEECCHHHHHHCTTCCE
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHH-----------------HHHHHhCCCcCCHHHHhcCCCCCE
Confidence            4799999999999999998865 78876 5888654311                 1111111 1578999998  8999


Q ss_pred             EEEeccCC
Q 017490          253 VVCCLSLN  260 (370)
Q Consensus       253 V~l~lP~t  260 (370)
                      |++++|..
T Consensus        67 V~i~tp~~   74 (331)
T 4hkt_A           67 VVICTPTD   74 (331)
T ss_dssp             EEECSCGG
T ss_pred             EEEeCCch
Confidence            99999854

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.13  E-value=0.00074  Score=64.52  Aligned_cols=109  Identities=15%  Similarity=0.130  Sum_probs=63.7

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCH---HHHHh
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDI---FEFAS  248 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~ell~  248 (370)
                      ..++|+++.|+|.|.+|++++..|...|+ +|.+++|+.+...........+....+    .........++   .+.+.
T Consensus       144 ~~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~----~~v~~~~~~~l~~~~~~l~  219 (312)
T 3t4e_A          144 FDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTD----CVVTVTDLADQHAFTEALA  219 (312)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSS----CEEEEEETTCHHHHHHHHH
T ss_pred             CCcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccC----cceEEechHhhhhhHhhcc
Confidence            46889999999999999999999999999 899999983321000000000000000    00000122344   56788


Q ss_pred             cCCEEEEeccCCh--hhh-ccc-CHHHHhcCCCCcEEEEcCCCc
Q 017490          249 KADVVVCCLSLNK--QTA-GIV-NKSFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       249 ~aDiV~l~lP~t~--~t~-~li-~~~~l~~mk~gailIN~sRg~  288 (370)
                      ++|+|+.++|..-  ... .++ +.   ..++++.+++++.-.+
T Consensus       220 ~~DiIINaTp~Gm~~~~~~~~~~~~---~~l~~~~~v~D~vY~P  260 (312)
T 3t4e_A          220 SADILTNGTKVGMKPLENESLIGDV---SLLRPELLVTECVYNP  260 (312)
T ss_dssp             HCSEEEECSSTTSTTSTTCCSCCCG---GGSCTTCEEEECCCSS
T ss_pred             CceEEEECCcCCCCCCCCCcccCCH---HHcCCCCEEEEeccCC
Confidence            9999999998642  111 111 22   2356666666665443

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=97.13  E-value=0.0005  Score=64.35  Aligned_cols=105  Identities=15%  Similarity=0.228  Sum_probs=64.8

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC-CC-CCHHHHHhcCCE
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CH-EDIFEFASKADV  252 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~l~ell~~aDi  252 (370)
                      .++++.|+|.|.+|++++..|...|+ +|.+++|+..+..                 .+....+ .. .++.  +.++|+
T Consensus       118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~-----------------~la~~~~~~~~~~~~--~~~~Di  178 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQ-----------------YLAALYGYAYINSLE--NQQADI  178 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHH-----------------HHHHHHTCEEESCCT--TCCCSE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHH-----------------HHHHHcCCccchhhh--cccCCE
Confidence            46899999999999999999999998 7999999864421                 1111111 01 1121  468999


Q ss_pred             EEEeccCChhh----hc-ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 017490          253 VVCCLSLNKQT----AG-IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHL  304 (370)
Q Consensus       253 V~l~lP~t~~t----~~-li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i  304 (370)
                      |+.++|.....    .. .+..+.   ++++.+++|+...+. .+ .|++..++..+
T Consensus       179 vInaTp~gm~~~~~~~~~~~~~~~---l~~~~~v~DlvY~P~-~T-~ll~~A~~~G~  230 (271)
T 1npy_A          179 LVNVTSIGMKGGKEEMDLAFPKAF---IDNASVAFDVVAMPV-ET-PFIRYAQARGK  230 (271)
T ss_dssp             EEECSSTTCTTSTTTTSCSSCHHH---HHHCSEEEECCCSSS-SC-HHHHHHHHTTC
T ss_pred             EEECCCCCccCccccCCCCCCHHH---cCCCCEEEEeecCCC-CC-HHHHHHHHCCC
Confidence            99999965321    11 133333   345777888776443 23 44444444333

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=97.12  E-value=0.00021  Score=69.00  Aligned_cols=67  Identities=18%  Similarity=0.242  Sum_probs=49.4

Q ss_pred             CceEEEEecCchhHHHHHHhccC--CCEEE-EEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHh--c
Q 017490          177 GKTVFILGFGNIGVELAKRLRPF--GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS--K  249 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~--G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~--~  249 (370)
                      -.+|||||+|.||+..++.++..  +++++ ++|++..+..                 ......+  .+.+++++++  +
T Consensus        13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~-----------------~~~~~~~~~~~~~~~~ll~~~~   75 (354)
T 3q2i_A           13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALK-----------------AAVERTGARGHASLTDMLAQTD   75 (354)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHH-----------------HHHHHHCCEEESCHHHHHHHCC
T ss_pred             cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHH-----------------HHHHHcCCceeCCHHHHhcCCC
Confidence            35899999999999999998876  78865 7888754311                 1111111  3578999997  7


Q ss_pred             CCEEEEeccCC
Q 017490          250 ADVVVCCLSLN  260 (370)
Q Consensus       250 aDiV~l~lP~t  260 (370)
                      .|+|++++|..
T Consensus        76 ~D~V~i~tp~~   86 (354)
T 3q2i_A           76 ADIVILTTPSG   86 (354)
T ss_dssp             CSEEEECSCGG
T ss_pred             CCEEEECCCcH
Confidence            99999999954

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.10  E-value=0.00093  Score=56.31  Aligned_cols=101  Identities=8%  Similarity=0.006  Sum_probs=58.2

Q ss_pred             CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCC---CHHHH-HhcCCE
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHE---DIFEF-ASKADV  252 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~el-l~~aDi  252 (370)
                      .+++.|+|+|.+|+.+++.|...|++|+++|+++.........  .  .+.    ....-.+...   .+++. +..+|+
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~--~--~~~----~~~~i~gd~~~~~~l~~a~i~~ad~   74 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQ--R--LGD----NADVIPGDSNDSSVLKKAGIDRCRA   74 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHH--H--HCT----TCEEEESCTTSHHHHHHHTTTTCSE
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHH--h--hcC----CCeEEEcCCCCHHHHHHcChhhCCE
Confidence            5678999999999999999999999999999864210000000  0  000    0000012222   24444 778999


Q ss_pred             EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCC
Q 017490          253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg  287 (370)
                      |+++++..+.+.  .-....+.+.+...+|...+.
T Consensus        75 vi~~~~~d~~n~--~~~~~a~~~~~~~~ii~~~~~  107 (153)
T 1id1_A           75 ILALSDNDADNA--FVVLSAKDMSSDVKTVLAVSD  107 (153)
T ss_dssp             EEECSSCHHHHH--HHHHHHHHHTSSSCEEEECSS
T ss_pred             EEEecCChHHHH--HHHHHHHHHCCCCEEEEEECC
Confidence            999998654332  223344455444445544333

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=97.08  E-value=0.00033  Score=66.70  Aligned_cols=103  Identities=16%  Similarity=0.241  Sum_probs=59.4

Q ss_pred             ceEEEEecCchhHHHHHHhcc--CCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCCCCHHHHHhcCCEEE
Q 017490          178 KTVFILGFGNIGVELAKRLRP--FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVV  254 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~--~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~  254 (370)
                      ++|+|||.|.+|..+|..+..  +|.+|..+|++...... ...  ++.  ......... ......+.++ ++.||+|+
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~-~~~--~l~--~~~~~~~~~~~i~~t~d~~~-l~~aDvVi   74 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQG-KAL--DMY--ESGPVGLFDTKVTGSNDYAD-TANSDIVI   74 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHH-HHH--HHH--TTHHHHTCCCEEEEESCGGG-GTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHH-HHH--hHH--hhhhcccCCcEEEECCCHHH-HCCCCEEE
Confidence            379999999999999999876  58899999997643210 000  000  000000000 0001245666 89999999


Q ss_pred             EeccCChhhhcc-------cCH-------HHHhcCCCCcEEEEcCCC
Q 017490          255 CCLSLNKQTAGI-------VNK-------SFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       255 l~lP~t~~t~~l-------i~~-------~~l~~mk~gailIN~sRg  287 (370)
                      +++|.. ...+.       .|.       +.+....|++++|+++.+
T Consensus        75 iav~~p-~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tNP  120 (310)
T 1guz_A           75 ITAGLP-RKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNP  120 (310)
T ss_dssp             ECCSCC-CCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSS
T ss_pred             EeCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence            999843 22221       111       122223578899998543

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=97.07  E-value=0.00036  Score=66.40  Aligned_cols=65  Identities=17%  Similarity=0.203  Sum_probs=46.3

Q ss_pred             eEEEEecCchhHHH-HHHhccCCCEEE-EEcCCCccccccccccchhhhccccccccccccC---CCCCHHHHHh--cCC
Q 017490          179 TVFILGFGNIGVEL-AKRLRPFGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFAS--KAD  251 (370)
Q Consensus       179 tvGIiGlG~IG~~v-A~~l~~~G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~--~aD  251 (370)
                      +|||||+|.||+.+ ++.++..|++++ ++|++.....                 ......+   .+.+++++++  ++|
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~-----------------~~~~~~g~~~~~~~~~~~l~~~~~D   64 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGA-----------------AYATENGIGKSVTSVEELVGDPDVD   64 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHH-----------------HHHHHTTCSCCBSCHHHHHTCTTCC
T ss_pred             eEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHH-----------------HHHHHcCCCcccCCHHHHhcCCCCC
Confidence            79999999999998 777665788865 6788754311                 1111111   3468999987  599


Q ss_pred             EEEEeccCC
Q 017490          252 VVVCCLSLN  260 (370)
Q Consensus       252 iV~l~lP~t  260 (370)
                      +|++++|..
T Consensus        65 ~V~i~tp~~   73 (332)
T 2glx_A           65 AVYVSTTNE   73 (332)
T ss_dssp             EEEECSCGG
T ss_pred             EEEEeCChh
Confidence            999999843

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=97.04  E-value=0.00033  Score=66.96  Aligned_cols=66  Identities=12%  Similarity=0.067  Sum_probs=48.9

Q ss_pred             ceEEEEecCchhHHHHHHhccC-CCEEE-EEcCCCccccccccccchhhhccccccccccccC---CCCCHHHHHh--cC
Q 017490          178 KTVFILGFGNIGVELAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFAS--KA  250 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~-G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~--~a  250 (370)
                      .+|||||+|.||+.+++.++.. +++|. ++|++..+..                 ......+   .+.++++++.  ++
T Consensus         6 ~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~-----------------~~~~~~~~~~~~~~~~~ll~~~~~   68 (330)
T 3e9m_A            6 IRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQ-----------------KMAKELAIPVAYGSYEELCKDETI   68 (330)
T ss_dssp             EEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHH-----------------HHHHHTTCCCCBSSHHHHHHCTTC
T ss_pred             EEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHH-----------------HHHHHcCCCceeCCHHHHhcCCCC
Confidence            5899999999999999999874 67876 6787654311                 1111211   3578999998  89


Q ss_pred             CEEEEeccCC
Q 017490          251 DVVVCCLSLN  260 (370)
Q Consensus       251 DiV~l~lP~t  260 (370)
                      |+|++++|..
T Consensus        69 D~V~i~tp~~   78 (330)
T 3e9m_A           69 DIIYIPTYNQ   78 (330)
T ss_dssp             SEEEECCCGG
T ss_pred             CEEEEcCCCH
Confidence            9999999954

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=97.04  E-value=0.00062  Score=64.97  Aligned_cols=66  Identities=8%  Similarity=0.132  Sum_probs=47.5

Q ss_pred             ceEEEEecCchhHHHHHHhccC-CCEEE-EEcCCCccccccccccchhhhccccccccccccC---CCCCHHHHHh--cC
Q 017490          178 KTVFILGFGNIGVELAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFAS--KA  250 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~-G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~--~a  250 (370)
                      .++||||+|.||+.+++.++.. +++|. ++|++..+..                 ......+   .+.++++++.  +.
T Consensus         6 ~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~-----------------~~a~~~~~~~~~~~~~~ll~~~~~   68 (329)
T 3evn_A            6 VRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQ-----------------AFANKYHLPKAYDKLEDMLADESI   68 (329)
T ss_dssp             EEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTC-----------------C---CCCCSCEESCHHHHHTCTTC
T ss_pred             eEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHH-----------------HHHHHcCCCcccCCHHHHhcCCCC
Confidence            5899999999999999988754 56655 6788765421                 1222222   2478999998  79


Q ss_pred             CEEEEeccCC
Q 017490          251 DVVVCCLSLN  260 (370)
Q Consensus       251 DiV~l~lP~t  260 (370)
                      |+|++++|..
T Consensus        69 D~V~i~tp~~   78 (329)
T 3evn_A           69 DVIYVATINQ   78 (329)
T ss_dssp             CEEEECSCGG
T ss_pred             CEEEECCCcH
Confidence            9999999954

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=97.03  E-value=0.00032  Score=67.37  Aligned_cols=66  Identities=21%  Similarity=0.346  Sum_probs=48.5

Q ss_pred             ceEEEEecCchhHHHHHHhccC-CCEEE-EEcCCCccccccccccchhhhccccccccccccC---CCCCHHHHHh--cC
Q 017490          178 KTVFILGFGNIGVELAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFAS--KA  250 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~-G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~--~a  250 (370)
                      .+|||||+|.||+..++.++.. ++++. ++|+++....                 ......+   .+.+++++++  ++
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~-----------------~~~~~~~~~~~~~~~~~ll~~~~~   65 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLR-----------------EMKEKLGVEKAYKDPHELIEDPNV   65 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHH-----------------HHHHHHTCSEEESSHHHHHHCTTC
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHH-----------------HHHHHhCCCceeCCHHHHhcCCCC
Confidence            4799999999999999998764 77876 5788754311                 1111111   2578999998  89


Q ss_pred             CEEEEeccCC
Q 017490          251 DVVVCCLSLN  260 (370)
Q Consensus       251 DiV~l~lP~t  260 (370)
                      |+|++++|..
T Consensus        66 D~V~i~tp~~   75 (344)
T 3ezy_A           66 DAVLVCSSTN   75 (344)
T ss_dssp             CEEEECSCGG
T ss_pred             CEEEEcCCCc
Confidence            9999999954

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=97.02  E-value=0.00062  Score=65.14  Aligned_cols=106  Identities=15%  Similarity=0.139  Sum_probs=63.7

Q ss_pred             ceEEEEecCchhHHHHHHhc-c-CCCEE-EEEcCCCccccccccccchhhhccccccccccccC---CCCCHHHHHh--c
Q 017490          178 KTVFILGFGNIGVELAKRLR-P-FGVKI-IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFAS--K  249 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~-~-~G~~V-~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~--~  249 (370)
                      .+|||||+|.||+..++.++ . -|++| .++|++..+..                 ......+   .+.+++++++  +
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~-----------------~~a~~~g~~~~~~~~~~~l~~~~   71 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLE-----------------WAKNELGVETTYTNYKDMIDTEN   71 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHH-----------------HHHHTTCCSEEESCHHHHHTTSC
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHH-----------------HHHHHhCCCcccCCHHHHhcCCC
Confidence            58999999999999999887 4 47885 56788754310                 1111111   2468899986  6


Q ss_pred             CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcC--CCcccCHHHHHHHHHhC-Cce
Q 017490          250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA--RGGLLDYEAIAHYLECG-HLG  305 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~s--Rg~~vd~~aL~~aL~~g-~i~  305 (370)
                      +|+|++++|......     -..+.++.|..++.-.  -...-+.++|.++.++. .+.
T Consensus        72 ~D~V~i~tp~~~h~~-----~~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~  125 (346)
T 3cea_A           72 IDAIFIVAPTPFHPE-----MTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQI  125 (346)
T ss_dssp             CSEEEECSCGGGHHH-----HHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSC
T ss_pred             CCEEEEeCChHhHHH-----HHHHHHHCCCEEEEcCCCCCCHHHHHHHHHHHHhCCCCe
Confidence            999999998542211     1223345565333211  11222334577777766 554

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=97.01  E-value=0.00042  Score=66.21  Aligned_cols=122  Identities=15%  Similarity=0.139  Sum_probs=67.0

Q ss_pred             ceEEEEecCchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhccccccccc-cccCCCCCHHHHHhcCCEEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLV-DEKGCHEDIFEFASKADVVV  254 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~~aDiV~  254 (370)
                      ++|+|||.|.||..+|..|...|+  +|..+|++........ .  ++.  ..  .... .......+ .+.++.||+|+
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~-~--~l~--~~--~~~~~~~~i~~~d-~~~~~~aDvVi   72 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDA-L--DLI--HG--TPFTRRANIYAGD-YADLKGSDVVI   72 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHH-H--HHH--HH--GGGSCCCEEEECC-GGGGTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHH-H--HHH--hh--hhhcCCcEEEeCC-HHHhCCCCEEE
Confidence            479999999999999999988888  9999998754311100 0  000  00  0000 00001124 35678999999


Q ss_pred             EeccCChh---hh-ccc------CHHH---HhcCCCCcEEEEcCCCcccCHHHHHHHH--HhCCceEE
Q 017490          255 CCLSLNKQ---TA-GIV------NKSF---LSSMKKGSLLVNIARGGLLDYEAIAHYL--ECGHLGGL  307 (370)
Q Consensus       255 l~lP~t~~---t~-~li------~~~~---l~~mk~gailIN~sRg~~vd~~aL~~aL--~~g~i~ga  307 (370)
                      +++|....   ++ .++      -.+.   +....|++++|+++.+.-+....+.+..  ...++.|.
T Consensus        73 iav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~~~~~~~~~~~~~~~~rviG~  140 (319)
T 1a5z_A           73 VAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDVLTYFFLKESGMDPRKVFGS  140 (319)
T ss_dssp             ECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred             EccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcHHHHHHHHHHHhCCChhhEEee
Confidence            99995331   01 000      0122   2223578899998665433333333332  33455544

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=97.01  E-value=0.00056  Score=65.82  Aligned_cols=107  Identities=12%  Similarity=0.061  Sum_probs=64.2

Q ss_pred             CceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccc-cccccchhhhccccccccccccCCCCCHHHHHhcCCEEE
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQ-VSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  254 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  254 (370)
                      .++|+|||.|.+|..+|..|...|+ +|..||++.+.... ..+......+    . ..........++++.++.||+|+
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~----~-~~~~~i~~t~d~~ea~~~aDiVi   83 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSV----V-DTNVSVRAEYSYEAALTGADCVI   83 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHH----T-TCCCCEEEECSHHHHHTTCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhc----c-CCCCEEEEeCCHHHHhCCCCEEE
Confidence            3589999999999999999988887 99999997643211 0000000000    0 00000001267888899999999


Q ss_pred             Eec--cCChhh------hc-cc--C----H---HHHhcCCCCcEEEEcCCCc
Q 017490          255 CCL--SLNKQT------AG-IV--N----K---SFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       255 l~l--P~t~~t------~~-li--~----~---~~l~~mk~gailIN~sRg~  288 (370)
                      +++  |..+..      +- ++  |    +   +.+....|.+++|+.+...
T Consensus        84 ~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNP~  135 (331)
T 1pzg_A           84 VTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPL  135 (331)
T ss_dssp             ECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSH
T ss_pred             EccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCch
Confidence            998  654321      11 11  0    1   1233345899999986643

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=97.01  E-value=0.00047  Score=66.78  Aligned_cols=66  Identities=15%  Similarity=0.174  Sum_probs=48.7

Q ss_pred             CceEEEEecCchhHHHHHHhccC-CCEEE-EEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHh--cC
Q 017490          177 GKTVFILGFGNIGVELAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS--KA  250 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~-G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~--~a  250 (370)
                      -.+|||||+|.||+..++.++.. +++|. ++|++..+..                  .....+  .+.++++++.  +.
T Consensus         5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~------------------~a~~~g~~~~~~~~~ll~~~~~   66 (359)
T 3e18_A            5 KYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKRE------------------AAAQKGLKIYESYEAVLADEKV   66 (359)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHH------------------HHHTTTCCBCSCHHHHHHCTTC
T ss_pred             cCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHH------------------HHHhcCCceeCCHHHHhcCCCC
Confidence            35899999999999999988876 78876 5687654311                  111112  3578999998  78


Q ss_pred             CEEEEeccCC
Q 017490          251 DVVVCCLSLN  260 (370)
Q Consensus       251 DiV~l~lP~t  260 (370)
                      |+|++|+|..
T Consensus        67 D~V~i~tp~~   76 (359)
T 3e18_A           67 DAVLIATPND   76 (359)
T ss_dssp             CEEEECSCGG
T ss_pred             CEEEEcCCcH
Confidence            9999999954

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.99  E-value=0.00025  Score=65.60  Aligned_cols=123  Identities=22%  Similarity=0.286  Sum_probs=69.7

Q ss_pred             HHHHHhcccCCCCcccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccc----------cch-----
Q 017490          159 RMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQ----------SSA-----  222 (370)
Q Consensus       159 ~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~----------~~~-----  222 (370)
                      .++++-..|+......|++++|.|+|+|.+|.++|+.|...|. ++..+|...-...-...+          ...     
T Consensus        10 ~Rq~~l~~~g~~~q~~l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~   89 (251)
T 1zud_1           10 SRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQ   89 (251)
T ss_dssp             HHHHTSTTTHHHHHHHHHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHH
T ss_pred             hhhcchhhcCHHHHHHHhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHH
Confidence            3333333354333356899999999999999999999999998 788888753210000000          000     


Q ss_pred             -hhhccccc-cccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcC
Q 017490          223 -LAVKNGII-DDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       223 -~~~~~~~~-~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~s  285 (370)
                       +...+... ..........++++++++++|+|+.++. +.+++.++++...+.   +.-+|..+
T Consensus        90 ~l~~~np~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~~---~~p~i~~~  150 (251)
T 1zud_1           90 RLTQLNPDIQLTALQQRLTGEALKDAVARADVVLDCTD-NMATRQEINAACVAL---NTPLITAS  150 (251)
T ss_dssp             HHHHHCTTSEEEEECSCCCHHHHHHHHHHCSEEEECCS-SHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred             HHHHHCCCCEEEEEeccCCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHHh---CCCEEEEe
Confidence             00000000 0000000011245678889999999987 667788888765543   33456553

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=96.96  E-value=0.00035  Score=66.36  Aligned_cols=122  Identities=16%  Similarity=0.126  Sum_probs=67.9

Q ss_pred             ceEEEEecCchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhcccccccccccc-CCCCCHHHHHhcCCEEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-GCHEDIFEFASKADVVV  254 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ell~~aDiV~  254 (370)
                      ++|+|||.|.+|..+|..+...|+  +|..+|++...... ..  .++.  ..  ....... ....+ .+.++.||+|+
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~-~~--~~l~--~~--~~~~~~~~i~~~~-~~a~~~aDvVI   72 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQA-EA--EDIA--HA--APVSHGTRVWHGG-HSELADAQVVI   72 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHH-HH--HHHT--TS--CCTTSCCEEEEEC-GGGGTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHH-HH--Hhhh--hh--hhhcCCeEEEECC-HHHhCCCCEEE
Confidence            479999999999999999998898  99999987542110 00  0000  00  0000000 01123 35688999999


Q ss_pred             EeccCChh-----------hhcccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEE
Q 017490          255 CCLSLNKQ-----------TAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGL  307 (370)
Q Consensus       255 l~lP~t~~-----------t~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga  307 (370)
                      ++++....           +-.++.  .+.+....|++++|+++.+.-+....+.+.....++.|.
T Consensus        73 i~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~~~~~~~~~~~~~~~rviG~  138 (304)
T 2v6b_A           73 LTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTDLATQLAPGQPVIGS  138 (304)
T ss_dssp             ECC------------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSHHHHHHHHHHHSCSSCEEEC
T ss_pred             EcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHhCChhcEEeC
Confidence            99953221           111110  022333468999999877654444445555544455544

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=96.89  E-value=0.0036  Score=62.43  Aligned_cols=129  Identities=16%  Similarity=0.147  Sum_probs=73.9

Q ss_pred             cccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcccccc--ccc--cchhhh----ccccccccccccC-CCCC
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQV--SCQ--SSALAV----KNGIIDDLVDEKG-CHED  242 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--~~~--~~~~~~----~~~~~~~~~~~~~-~~~~  242 (370)
                      +..+.|+||.|=|+|++|..+|+.|...|++|++.+.+......+  .+.  ...+..    ..+.+.+...+.+ .+.+
T Consensus       230 ~~~l~Gk~vaVQG~GnVG~~aa~~L~e~GakvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~~g~v~~~~~~~g~~~~~  309 (450)
T 4fcc_A          230 GMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVADYAKEFGLVYLE  309 (450)
T ss_dssp             TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHTSTTCCHHHHHHHHTCEEEE
T ss_pred             CCCcCCCEEEEeCCChHHHHHHHHHHhcCCeEEEEecCCceEEeCCCCCHHHHHHHHHHhcccCCccccccccCCcEEec
Confidence            357899999999999999999999999999998765322110000  000  000000    0000000000011 0011


Q ss_pred             HHHHH-hcCCEEEEeccCChhhhcccCHHHHhcCCCC--cEEEEcCCCcccCHHHHHHHHHhCCceEE
Q 017490          243 IFEFA-SKADVVVCCLSLNKQTAGIVNKSFLSSMKKG--SLLVNIARGGLLDYEAIAHYLECGHLGGL  307 (370)
Q Consensus       243 l~ell-~~aDiV~l~lP~t~~t~~li~~~~l~~mk~g--ailIN~sRg~~vd~~aL~~aL~~g~i~ga  307 (370)
                      -++++ ..|||++-|     .+.+.|+.+....++..  .++++-+.+.+- .++ .+.|.+..|..+
T Consensus       310 ~~~i~~~~~DI~iPc-----Al~~~I~~~~a~~L~a~g~k~IaEgAN~p~t-~eA-~~iL~~rGIl~~  370 (450)
T 4fcc_A          310 GQQPWSVPVDIALPC-----ATQNELDVDAAHQLIANGVKAVAEGANMPTT-IEA-TELFQQAGVLFA  370 (450)
T ss_dssp             TCCGGGSCCSEEEEC-----SCTTCBCHHHHHHHHHTTCCEEECCSSSCBC-HHH-HHHHHHTTCEEE
T ss_pred             CcccccCCccEEeec-----cccccccHHHHHHHHhcCceEEecCCCCCCC-HHH-HHHHHHCCCEEE
Confidence            12222 379988766     35677888887777653  578888888764 333 467887777643

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.85  E-value=0.00064  Score=68.53  Aligned_cols=101  Identities=16%  Similarity=0.265  Sum_probs=58.8

Q ss_pred             cccccCceEEEEecCchhHHHHHHhccC-CCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCCCCHHHHHhc
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASK  249 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~-G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~  249 (370)
                      +..+.+++|+|+|.|.+|+.+++.|... |++|.+++|+..+.......       .+  ..... .....+++.++++.
T Consensus        18 ~~~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~-------~~--~~~~~~D~~d~~~l~~~l~~   88 (467)
T 2axq_A           18 EGRHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKP-------SG--SKAISLDVTDDSALDKVLAD   88 (467)
T ss_dssp             -----CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGG-------GT--CEEEECCTTCHHHHHHHHHT
T ss_pred             ccCCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHh-------cC--CcEEEEecCCHHHHHHHHcC
Confidence            4568899999999999999999999877 78999999975432100000       00  00000 00012246677889


Q ss_pred             CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                      +|+|++++|..... .+ ..   +.+++|..+++++-
T Consensus        89 ~DvVIn~tp~~~~~-~v-~~---a~l~~g~~vvd~~~  120 (467)
T 2axq_A           89 NDVVISLIPYTFHP-NV-VK---SAIRTKTDVVTSSY  120 (467)
T ss_dssp             SSEEEECSCGGGHH-HH-HH---HHHHHTCEEEECSC
T ss_pred             CCEEEECCchhhhH-HH-HH---HHHhcCCEEEEeec
Confidence            99999999854221 11 11   22345666776643

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=96.82  E-value=0.0012  Score=64.29  Aligned_cols=39  Identities=26%  Similarity=0.388  Sum_probs=35.3

Q ss_pred             cccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          174 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      .+.+++|||+|.|.+|+.+++.++.+|++|+++|+.+..
T Consensus         9 ~~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~~   47 (377)
T 3orq_A            9 LKFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSEDC   47 (377)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence            467999999999999999999999999999999986543

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=96.79  E-value=0.0011  Score=64.27  Aligned_cols=66  Identities=17%  Similarity=0.152  Sum_probs=47.5

Q ss_pred             CceEEEEecCchhHH-HHHHhccC-CCEEE-EEcCCCccccccccccchhhhccccccccccccC---CCCCHHHHHhcC
Q 017490          177 GKTVFILGFGNIGVE-LAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFASKA  250 (370)
Q Consensus       177 g~tvGIiGlG~IG~~-vA~~l~~~-G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~~a  250 (370)
                      -.+|||||+|.||+. +++.++.. +++|. ++|+++.+..                 .....++   .+.++++++++.
T Consensus         5 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~-----------------~~a~~~~~~~~~~~~~~ll~~~   67 (359)
T 3m2t_A            5 LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERAR-----------------RVHRFISDIPVLDNVPAMLNQV   67 (359)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHG-----------------GGGGTSCSCCEESSHHHHHHHS
T ss_pred             cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHH-----------------HHHHhcCCCcccCCHHHHhcCC
Confidence            358999999999995 88888765 77876 7788754421                 1222221   357899999855


Q ss_pred             --CEEEEeccC
Q 017490          251 --DVVVCCLSL  259 (370)
Q Consensus       251 --DiV~l~lP~  259 (370)
                        |+|++|+|.
T Consensus        68 ~vD~V~i~tp~   78 (359)
T 3m2t_A           68 PLDAVVMAGPP   78 (359)
T ss_dssp             CCSEEEECSCH
T ss_pred             CCCEEEEcCCc
Confidence              999999984

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=96.78  E-value=0.0013  Score=64.71  Aligned_cols=108  Identities=13%  Similarity=0.113  Sum_probs=66.1

Q ss_pred             eEEEEecCchhHHHHHHhccCC--------CEEEEEcCCCcccccc-ccccchhhhccccccc--cccccCCCCCHHHHH
Q 017490          179 TVFILGFGNIGVELAKRLRPFG--------VKIIATKRSWASHSQV-SCQSSALAVKNGIIDD--LVDEKGCHEDIFEFA  247 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G--------~~V~~~dr~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~l~ell  247 (370)
                      +|+|||.|.-|.++|..|...|        .+|..|.|........ .+.-+..+.....+.+  +-+......++++.+
T Consensus        36 KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~al  115 (391)
T 4fgw_A           36 KVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLIDSV  115 (391)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHHHH
T ss_pred             eEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHHHH
Confidence            7999999999999999997654        3588887764321000 0000000000000000  101111236899999


Q ss_pred             hcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490          248 SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       248 ~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~  288 (370)
                      +.||+|++++| +...+.++. +.-..++++..+|+++-|=
T Consensus       116 ~~ad~ii~avP-s~~~r~~l~-~l~~~~~~~~~iv~~~KGi  154 (391)
T 4fgw_A          116 KDVDIIVFNIP-HQFLPRICS-QLKGHVDSHVRAISCLKGF  154 (391)
T ss_dssp             TTCSEEEECSC-GGGHHHHHH-HHTTTSCTTCEEEECCCSC
T ss_pred             hcCCEEEEECC-hhhhHHHHH-HhccccCCCceeEEecccc
Confidence            99999999999 445555443 3445678999999999873

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.78  E-value=0.0012  Score=59.00  Aligned_cols=94  Identities=14%  Similarity=0.071  Sum_probs=55.6

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCC---HHHH-HhcCCEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHED---IFEF-ASKADVV  253 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~el-l~~aDiV  253 (370)
                      ++|.|+|+|.+|+.+|+.|...|.+|+++|+++.........           .....-.+...+   +++. +.++|+|
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~-----------~~~~~i~gd~~~~~~l~~a~i~~ad~v   69 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKK-----------LKATIIHGDGSHKEILRDAEVSKNDVV   69 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH-----------SSSEEEESCTTSHHHHHHHTCCTTCEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH-----------cCCeEEEcCCCCHHHHHhcCcccCCEE
Confidence            368999999999999999999999999999876432100000           000001112222   3333 5789999


Q ss_pred             EEeccCChhhhcccCHHHHhcCCCCcEEEEc
Q 017490          254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNI  284 (370)
Q Consensus       254 ~l~lP~t~~t~~li~~~~l~~mk~gailIN~  284 (370)
                      ++++|....+.  +-....+.+.+...+|-.
T Consensus        70 i~~~~~d~~n~--~~~~~a~~~~~~~~iia~   98 (218)
T 3l4b_C           70 VILTPRDEVNL--FIAQLVMKDFGVKRVVSL   98 (218)
T ss_dssp             EECCSCHHHHH--HHHHHHHHTSCCCEEEEC
T ss_pred             EEecCCcHHHH--HHHHHHHHHcCCCeEEEE
Confidence            99998654432  222333333344444433

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=96.76  E-value=0.00071  Score=64.18  Aligned_cols=103  Identities=21%  Similarity=0.204  Sum_probs=57.9

Q ss_pred             ceEEEEecCchhHHHHHHhcc-CCCEEE-EEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEE
Q 017490          178 KTVFILGFGNIGVELAKRLRP-FGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  255 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~-~G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  255 (370)
                      .+|||||+|.||+.+++.++. -++++. ++|+++.+...                .... ...++++.+. .++|+|++
T Consensus        10 irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~----------------~g~~-~~~~~~l~~~-~~~DvVii   71 (304)
T 3bio_A           10 IRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF----------------ELQP-FRVVSDIEQL-ESVDVALV   71 (304)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC-----------------------CCTT-SCEESSGGGS-SSCCEEEE
T ss_pred             CEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH----------------cCCC-cCCHHHHHhC-CCCCEEEE
Confidence            589999999999999999875 478877 58887544110                0000 1123445444 68999999


Q ss_pred             eccCChhhhcccCHHHHhcCCCCcEEEEcCC--C-cccCHHHHHHHHHhCC
Q 017490          256 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR--G-GLLDYEAIAHYLECGH  303 (370)
Q Consensus       256 ~lP~t~~t~~li~~~~l~~mk~gailIN~sR--g-~~vd~~aL~~aL~~g~  303 (370)
                      |+|......     -..+.++.|.-+++..-  + ...+.+.|.++.++..
T Consensus        72 atp~~~h~~-----~~~~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g  117 (304)
T 3bio_A           72 CSPSREVER-----TALEILKKGICTADSFDIHDGILALRRSLGDAAGKSG  117 (304)
T ss_dssp             CSCHHHHHH-----HHHHHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHT
T ss_pred             CCCchhhHH-----HHHHHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCC
Confidence            998432211     12233455666665421  1 1223345666655544

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=96.74  E-value=0.0014  Score=62.85  Aligned_cols=125  Identities=14%  Similarity=0.087  Sum_probs=67.9

Q ss_pred             ceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEe
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  256 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  256 (370)
                      ++|+|||.|.+|..+|..+...|+ +|..+|++.+...... .  ++...... ...........++ +.++.||+|+++
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~-~--~l~~~~~~-~~~~~~i~~t~d~-~al~~aD~VI~a   89 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKA-L--DLNHCMAL-IGSPAKIFGENNY-EYLQNSDVVIIT   89 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHH-H--HHHHHHHH-HTCCCCEEEESCG-GGGTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHH-H--HHHhHhhc-cCCCCEEEECCCH-HHHCCCCEEEEc
Confidence            589999999999999999998888 9999999764321100 0  00000000 0000001112456 778999999999


Q ss_pred             c--cCChh-hhc-cc--C----H---HHHhcCCCCcEEEEcCCCcccCHHHHHHHH--HhCCceEE
Q 017490          257 L--SLNKQ-TAG-IV--N----K---SFLSSMKKGSLLVNIARGGLLDYEAIAHYL--ECGHLGGL  307 (370)
Q Consensus       257 l--P~t~~-t~~-li--~----~---~~l~~mk~gailIN~sRg~~vd~~aL~~aL--~~g~i~ga  307 (370)
                      +  |..+. |+. ++  |    .   +.+....|++++|+++...-+....+.+.-  ...++.|.
T Consensus        90 vg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~rviG~  155 (328)
T 2hjr_A           90 AGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITNPLDAMVYYFKEKSGIPANKVCGM  155 (328)
T ss_dssp             CSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHHHHHHCCCGGGEEES
T ss_pred             CCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHHHHhcCCChhhEEEe
Confidence            8  43221 111 10  1    1   122333488999998653222222222221  24456655

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.73  E-value=0.0016  Score=59.23  Aligned_cols=99  Identities=20%  Similarity=0.161  Sum_probs=60.2

Q ss_pred             CCcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhc
Q 017490          170 PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK  249 (370)
Q Consensus       170 ~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  249 (370)
                      |...++.|++|.|||.|.+|..-++.|...|++|+++++...+....      +.. .+. .....  ..+  .++.+..
T Consensus        24 Pifl~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~------l~~-~~~-i~~i~--~~~--~~~dL~~   91 (223)
T 3dfz_A           24 TVMLDLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINE------WEA-KGQ-LRVKR--KKV--GEEDLLN   91 (223)
T ss_dssp             EEEECCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHH------HHH-TTS-CEEEC--SCC--CGGGSSS
T ss_pred             ccEEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHH------HHH-cCC-cEEEE--CCC--CHhHhCC
Confidence            34568999999999999999999999999999999999864431100      000 000 00110  111  1245678


Q ss_pred             CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                      +|+|+.+.. .++    +|.......+ -.++||+..
T Consensus        92 adLVIaAT~-d~~----~N~~I~~~ak-~gi~VNvvD  122 (223)
T 3dfz_A           92 VFFIVVATN-DQA----VNKFVKQHIK-NDQLVNMAS  122 (223)
T ss_dssp             CSEEEECCC-CTH----HHHHHHHHSC-TTCEEEC--
T ss_pred             CCEEEECCC-CHH----HHHHHHHHHh-CCCEEEEeC
Confidence            998887644 333    2344444445 557788743

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=96.70  E-value=0.00089  Score=63.62  Aligned_cols=106  Identities=13%  Similarity=0.161  Sum_probs=62.8

Q ss_pred             ceEEEEecCchhHH-HHHHhccC-CCEEEEEcCCCccccccccccchhhhccccccccccccC--C-CCCHHHHH-hcCC
Q 017490          178 KTVFILGFGNIGVE-LAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--C-HEDIFEFA-SKAD  251 (370)
Q Consensus       178 ~tvGIiGlG~IG~~-vA~~l~~~-G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~l~ell-~~aD  251 (370)
                      .+|||||+|.||+. +++.++.. +++|.++|++..+..                 .....++  . +.+..+++ .++|
T Consensus         3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~-----------------~~a~~~g~~~~~~~~~~~l~~~~D   65 (323)
T 1xea_A            3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLG-----------------TLATRYRVSATCTDYRDVLQYGVD   65 (323)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHH-----------------HHHHHTTCCCCCSSTTGGGGGCCS
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHH-----------------HHHHHcCCCccccCHHHHhhcCCC
Confidence            47999999999984 88888764 778889998754321                 1111111  1 23444555 6899


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHhCCce
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGS-LLVNI-ARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~ga-ilIN~-sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      +|++++|.... ..+    ..+.++.|. +++.- .--.+-+.++|.++.++..+.
T Consensus        66 ~V~i~tp~~~h-~~~----~~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~  116 (323)
T 1xea_A           66 AVMIHAATDVH-STL----AAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQP  116 (323)
T ss_dssp             EEEECSCGGGH-HHH----HHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             EEEEECCchhH-HHH----HHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCe
Confidence            99999994322 111    112344454 55542 112233455677777776665

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=96.69  E-value=0.0021  Score=64.37  Aligned_cols=77  Identities=18%  Similarity=0.249  Sum_probs=49.6

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCCCCHHHHHhcCCEEE
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVV  254 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~  254 (370)
                      .+++|+|+|.|.||+.+++.|...|++|.+++|+..+.......   +   .+  ..... ......+++++++.+|+|+
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~---~---~~--~~~~~~Dv~d~~~l~~~l~~~DvVI   73 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAG---V---QH--STPISLDVNDDAALDAEVAKHDLVI   73 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTT---C---TT--EEEEECCTTCHHHHHHHHTTSSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHh---c---CC--ceEEEeecCCHHHHHHHHcCCcEEE
Confidence            47899999999999999999999999999999875431100000   0   00  00000 0001234567788999999


Q ss_pred             EeccCC
Q 017490          255 CCLSLN  260 (370)
Q Consensus       255 l~lP~t  260 (370)
                      .+.|..
T Consensus        74 n~a~~~   79 (450)
T 1ff9_A           74 SLIPYT   79 (450)
T ss_dssp             ECCC--
T ss_pred             ECCccc
Confidence            999864

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=96.67  E-value=0.0005  Score=66.37  Aligned_cols=69  Identities=16%  Similarity=0.145  Sum_probs=48.4

Q ss_pred             ccCceEEEEecCchhH-HHHHHhccC-CCEEE-EEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHh-
Q 017490          175 LLGKTVFILGFGNIGV-ELAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS-  248 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~-~vA~~l~~~-G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~-  248 (370)
                      ..-.+|||||+|.||+ .+++.++.. |++|. ++|++..+..                 ......+  .+.+++++++ 
T Consensus        25 m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~-----------------~~a~~~g~~~~~~~~~ll~~   87 (350)
T 3rc1_A           25 ANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAK-----------------RFTERFGGEPVEGYPALLER   87 (350)
T ss_dssp             -CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHH-----------------HHHHHHCSEEEESHHHHHTC
T ss_pred             CCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHH-----------------HHHHHcCCCCcCCHHHHhcC
Confidence            3446899999999998 788888766 78876 6787654311                 1112222  2368999997 


Q ss_pred             -cCCEEEEeccCC
Q 017490          249 -KADVVVCCLSLN  260 (370)
Q Consensus       249 -~aDiV~l~lP~t  260 (370)
                       +.|+|++++|..
T Consensus        88 ~~~D~V~i~tp~~  100 (350)
T 3rc1_A           88 DDVDAVYVPLPAV  100 (350)
T ss_dssp             TTCSEEEECCCGG
T ss_pred             CCCCEEEECCCcH
Confidence             589999999954

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=96.67  E-value=0.0027  Score=60.53  Aligned_cols=102  Identities=15%  Similarity=0.155  Sum_probs=63.6

Q ss_pred             ceEEEEecCchhHHHHHHhccC-CCEE-EEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPF-GVKI-IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  255 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~-G~~V-~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  255 (370)
                      .+|||||+|+||+.+++.+... ++++ .++|++.... .               .-.+.   .+.++++++.++|+|++
T Consensus         4 irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~~-~---------------~~gv~---~~~d~~~ll~~~DvVii   64 (320)
T 1f06_A            4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLD-T---------------KTPVF---DVADVDKHADDVDVLFL   64 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCS-S---------------SSCEE---EGGGGGGTTTTCSEEEE
T ss_pred             CEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHHh-h---------------cCCCc---eeCCHHHHhcCCCEEEE
Confidence            4799999999999999998765 6775 5777764321 0               00000   12466677788999999


Q ss_pred             eccCChhhhcccCHHHHhcCCCCcEEEEcCCCcc-c-CH-HHHHHHHHhCC
Q 017490          256 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL-L-DY-EAIAHYLECGH  303 (370)
Q Consensus       256 ~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~-v-d~-~aL~~aL~~g~  303 (370)
                      ++|.....     ......++.|.-+|...-..+ + +. +.|.++.+++.
T Consensus        65 atp~~~h~-----~~~~~al~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~~~  110 (320)
T 1f06_A           65 CMGSATDI-----PEQAPKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAG  110 (320)
T ss_dssp             CSCTTTHH-----HHHHHHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHT
T ss_pred             cCCcHHHH-----HHHHHHHHCCCEEEECCCCcCCHHHHHHHHHHHHHhCC
Confidence            99854321     223344666776666544332 2 22 45666666654

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=96.67  E-value=0.00091  Score=64.13  Aligned_cols=66  Identities=18%  Similarity=0.210  Sum_probs=47.7

Q ss_pred             ceEEEEecCchhHHHHHHhc-c-CCCEEE-EEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHHhc-
Q 017490          178 KTVFILGFGNIGVELAKRLR-P-FGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASK-  249 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~-~-~G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~-  249 (370)
                      .+|||||+|.||+..++.++ . -++++. ++|++.....                 .....++    .+.++++++++ 
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~-----------------~~~~~~g~~~~~~~~~~~ll~~~   65 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQ-----------------KVVEQYQLNATVYPNDDSLLADE   65 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHH-----------------HHHHHTTCCCEEESSHHHHHHCT
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHH-----------------HHHHHhCCCCeeeCCHHHHhcCC
Confidence            47999999999999999887 4 477866 6787654311                 1111111    34789999976 


Q ss_pred             -CCEEEEeccCC
Q 017490          250 -ADVVVCCLSLN  260 (370)
Q Consensus       250 -aDiV~l~lP~t  260 (370)
                       .|+|++++|..
T Consensus        66 ~~D~V~i~tp~~   77 (344)
T 3mz0_A           66 NVDAVLVTSWGP   77 (344)
T ss_dssp             TCCEEEECSCGG
T ss_pred             CCCEEEECCCch
Confidence             99999999854

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=96.65  E-value=0.0015  Score=62.75  Aligned_cols=66  Identities=17%  Similarity=0.163  Sum_probs=44.8

Q ss_pred             ceEEEEecCchhHH-HHH-Hhc-cCCCEEE-EEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhc--
Q 017490          178 KTVFILGFGNIGVE-LAK-RLR-PFGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASK--  249 (370)
Q Consensus       178 ~tvGIiGlG~IG~~-vA~-~l~-~~G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~--  249 (370)
                      .+|||||+|.||+. .+. .+. .-+++|. ++|+++.+...                 .....+  .+.++++++..  
T Consensus         3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~-----------------~~~~~~~~~~~~~~~ll~~~~   65 (345)
T 3f4l_A            3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQ-----------------APIYSHIHFTSDLDEVLNDPD   65 (345)
T ss_dssp             EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGG-----------------SGGGTTCEEESCTHHHHTCTT
T ss_pred             eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHH-----------------HHhcCCCceECCHHHHhcCCC
Confidence            47999999999996 455 334 3478876 78887654210                 000111  35789999986  


Q ss_pred             CCEEEEeccCC
Q 017490          250 ADVVVCCLSLN  260 (370)
Q Consensus       250 aDiV~l~lP~t  260 (370)
                      .|+|++++|..
T Consensus        66 ~D~V~i~tp~~   76 (345)
T 3f4l_A           66 VKLVVVCTHAD   76 (345)
T ss_dssp             EEEEEECSCGG
T ss_pred             CCEEEEcCChH
Confidence            89999999854

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=96.64  E-value=0.0014  Score=62.87  Aligned_cols=103  Identities=9%  Similarity=0.058  Sum_probs=60.8

Q ss_pred             ceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccc-c-ccCCCCCHHHHHhcCCEEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLV-D-EKGCHEDIFEFASKADVVV  254 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~l~ell~~aDiV~  254 (370)
                      ++|+|||.|.+|..+|..+...|+ +|..+|++....... ..  ++.   ....... . ......+. +.++.||+|+
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~-~~--~l~---~~~~~~~~~~~i~~t~d~-~al~~aD~Vi   77 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGK-AL--DTS---HTNVMAYSNCKVSGSNTY-DDLAGADVVI   77 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHH-HH--HHH---THHHHHTCCCCEEEECCG-GGGTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHH-HH--HHH---hhhhhcCCCcEEEECCCH-HHhCCCCEEE
Confidence            589999999999999999988888 999999876432100 00  000   0000000 0 00012466 7789999999


Q ss_pred             Eec--cCChhh------h-ccc------CHH---HHhcCCCCcEEEEcCCC
Q 017490          255 CCL--SLNKQT------A-GIV------NKS---FLSSMKKGSLLVNIARG  287 (370)
Q Consensus       255 l~l--P~t~~t------~-~li------~~~---~l~~mk~gailIN~sRg  287 (370)
                      ++.  |..+..      + .++      -++   .+....|++++|+++..
T Consensus        78 ~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNP  128 (322)
T 1t2d_A           78 VTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNP  128 (322)
T ss_dssp             ECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSS
T ss_pred             EeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence            998  543321      1 111      111   22233589999998653

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=96.62  E-value=0.002  Score=62.13  Aligned_cols=106  Identities=11%  Similarity=0.163  Sum_probs=65.8

Q ss_pred             ceEEEEecCchhHHHHHHhccC-CCEE-EEEcCCCccccccccccchhhhccccccccccccC------CCCCHHHHHh-
Q 017490          178 KTVFILGFGNIGVELAKRLRPF-GVKI-IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG------CHEDIFEFAS-  248 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~-G~~V-~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~ell~-  248 (370)
                      .+|||||+|.||+.+++.+... ++++ .++|++.....                 .....++      .+.+++++++ 
T Consensus         7 ~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~-----------------~~a~~~~~~~~~~~~~~~~~ll~~   69 (362)
T 1ydw_A            7 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAK-----------------AFATANNYPESTKIHGSYESLLED   69 (362)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHH-----------------HHHHHTTCCTTCEEESSHHHHHHC
T ss_pred             eEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHH-----------------HHHHHhCCCCCCeeeCCHHHHhcC
Confidence            4799999999999999988764 6676 46787654311                 1111111      2468999987 


Q ss_pred             -cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcC--CCcccCHHHHHHHHHhCCce
Q 017490          249 -KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA--RGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       249 -~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~s--Rg~~vd~~aL~~aL~~g~i~  305 (370)
                       +.|+|++++|......     -....++.|.-++.--  --.+-+.++|.++.++..+.
T Consensus        70 ~~~D~V~i~tp~~~h~~-----~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~  124 (362)
T 1ydw_A           70 PEIDALYVPLPTSLHVE-----WAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQ  124 (362)
T ss_dssp             TTCCEEEECCCGGGHHH-----HHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCC
T ss_pred             CCCCEEEEcCChHHHHH-----HHHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCE
Confidence             5999999998442211     1223356665444322  12233456788888877665

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=96.62  E-value=0.0013  Score=63.63  Aligned_cols=67  Identities=21%  Similarity=0.282  Sum_probs=48.7

Q ss_pred             CceEEEEecCchhHHHHHHhc-c-CCCEEE-EEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHHh-
Q 017490          177 GKTVFILGFGNIGVELAKRLR-P-FGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFAS-  248 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~-~-~G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~-  248 (370)
                      -.+|||||+|.||+..++.++ . -|++|. ++|++..+..                 .....++    .+.++++++. 
T Consensus        23 ~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~-----------------~~a~~~g~~~~~~~~~~~ll~~   85 (357)
T 3ec7_A           23 TLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQ-----------------AALDKYAIEAKDYNDYHDLIND   85 (357)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHH-----------------HHHHHHTCCCEEESSHHHHHHC
T ss_pred             eeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHH-----------------HHHHHhCCCCeeeCCHHHHhcC
Confidence            468999999999999999887 4 478866 6888765421                 1111111    3578999997 


Q ss_pred             -cCCEEEEeccCC
Q 017490          249 -KADVVVCCLSLN  260 (370)
Q Consensus       249 -~aDiV~l~lP~t  260 (370)
                       +.|+|++|+|..
T Consensus        86 ~~~D~V~i~tp~~   98 (357)
T 3ec7_A           86 KDVEVVIITASNE   98 (357)
T ss_dssp             TTCCEEEECSCGG
T ss_pred             CCCCEEEEcCCcH
Confidence             589999999854

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=96.62  E-value=0.0015  Score=63.26  Aligned_cols=66  Identities=15%  Similarity=0.201  Sum_probs=45.7

Q ss_pred             ceEEEEecCchhHH-HHHHhccC-CCEEE-EEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHh--cCCE
Q 017490          178 KTVFILGFGNIGVE-LAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADV  252 (370)
Q Consensus       178 ~tvGIiGlG~IG~~-vA~~l~~~-G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDi  252 (370)
                      .+|||||+|.||+. .++.++.. +++|. ++|++..+..                 ........+.+++++++  +.|+
T Consensus         8 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~-----------------~~~~~~~~~~~~~~ll~~~~~D~   70 (364)
T 3e82_A            8 INIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVK-----------------RDLPDVTVIASPEAAVQHPDVDL   70 (364)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH-----------------HHCTTSEEESCHHHHHTCTTCSE
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH-----------------hhCCCCcEECCHHHHhcCCCCCE
Confidence            47999999999997 67777655 78875 6777653310                 00000013578999998  7899


Q ss_pred             EEEeccCC
Q 017490          253 VVCCLSLN  260 (370)
Q Consensus       253 V~l~lP~t  260 (370)
                      |++|+|..
T Consensus        71 V~i~tp~~   78 (364)
T 3e82_A           71 VVIASPNA   78 (364)
T ss_dssp             EEECSCGG
T ss_pred             EEEeCChH
Confidence            99999854

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.57  E-value=0.0018  Score=64.26  Aligned_cols=94  Identities=17%  Similarity=0.175  Sum_probs=58.7

Q ss_pred             CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCH---HHH-HhcCCE
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDI---FEF-ASKADV  252 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~el-l~~aDi  252 (370)
                      +.+|.|+|+|.+|+.+|+.|...|.+|+++|+++........            .....-++...+.   +++ +.++|+
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~------------~g~~vi~GDat~~~~L~~agi~~A~~   71 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRK------------FGMKVFYGDATRMDLLESAGAAKAEV   71 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH------------TTCCCEESCTTCHHHHHHTTTTTCSE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh------------CCCeEEEcCCCCHHHHHhcCCCccCE
Confidence            356999999999999999999999999999988654110000            0000011222333   333 578999


Q ss_pred             EEEeccCChhhhcccCHHHHhcCCCCcEEEEc
Q 017490          253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNI  284 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~  284 (370)
                      |+++++....+..+  ....+.+.|...+|--
T Consensus        72 viv~~~~~~~n~~i--~~~ar~~~p~~~Iiar  101 (413)
T 3l9w_A           72 LINAIDDPQTNLQL--TEMVKEHFPHLQIIAR  101 (413)
T ss_dssp             EEECCSSHHHHHHH--HHHHHHHCTTCEEEEE
T ss_pred             EEECCCChHHHHHH--HHHHHHhCCCCeEEEE
Confidence            99999865444332  2344555666555443

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=96.53  E-value=0.0012  Score=63.06  Aligned_cols=66  Identities=12%  Similarity=0.144  Sum_probs=46.8

Q ss_pred             ceEEEEecCchhHHHHHHhccCC---CEE-EEEcCCCccccccccccchhhhccccccccccccC---CCCCHHHHHh--
Q 017490          178 KTVFILGFGNIGVELAKRLRPFG---VKI-IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFAS--  248 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G---~~V-~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~--  248 (370)
                      .++||||+|.||+..++.++..+   ++| .++|++..+..                 ......+   .+.++++++.  
T Consensus         3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~-----------------~~a~~~~~~~~~~~~~~ll~~~   65 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAK-----------------EFAQKHDIPKAYGSYEELAKDP   65 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHH-----------------HHHHHHTCSCEESSHHHHHHCT
T ss_pred             cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHH-----------------HHHHHcCCCcccCCHHHHhcCC
Confidence            47999999999999999988654   454 45787654311                 1112222   2578999997  


Q ss_pred             cCCEEEEeccCC
Q 017490          249 KADVVVCCLSLN  260 (370)
Q Consensus       249 ~aDiV~l~lP~t  260 (370)
                      +.|+|++++|..
T Consensus        66 ~vD~V~i~tp~~   77 (334)
T 3ohs_X           66 NVEVAYVGTQHP   77 (334)
T ss_dssp             TCCEEEECCCGG
T ss_pred             CCCEEEECCCcH
Confidence            699999999854

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=96.52  E-value=0.0012  Score=63.84  Aligned_cols=95  Identities=19%  Similarity=0.180  Sum_probs=62.6

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCC---HHHHHhcCCE
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHED---IFEFASKADV  252 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~ell~~aDi  252 (370)
                      .|.+|.|+|.|.||...++.++.+|++|++++++..+.......            -..+....+.+   +.++....|+
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~------------lGa~~v~~~~~~~~~~~~~~~~D~  254 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKN------------FGADSFLVSRDQEQMQAAAGTLDG  254 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHT------------SCCSEEEETTCHHHHHHTTTCEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh------------cCCceEEeccCHHHHHHhhCCCCE
Confidence            68899999999999999999999999999999875442110000            00000001112   2333346799


Q ss_pred             EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCC
Q 017490          253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg  287 (370)
                      |+.++.....     -...++.|+++..+|+++..
T Consensus       255 vid~~g~~~~-----~~~~~~~l~~~G~iv~~g~~  284 (366)
T 1yqd_A          255 IIDTVSAVHP-----LLPLFGLLKSHGKLILVGAP  284 (366)
T ss_dssp             EEECCSSCCC-----SHHHHHHEEEEEEEEECCCC
T ss_pred             EEECCCcHHH-----HHHHHHHHhcCCEEEEEccC
Confidence            9988874322     24567778899999998753

>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.52  E-value=0.014  Score=55.53  Aligned_cols=100  Identities=18%  Similarity=0.181  Sum_probs=66.4

Q ss_pred             cccCceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccc-ccccccCCCCCHHHHHhcCC
Q 017490          174 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIID-DLVDEKGCHEDIFEFASKAD  251 (370)
Q Consensus       174 ~l~g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~~aD  251 (370)
                      .+.|++|++|| .+++.++++..+..+|++|....|..-..  +.          .... ..........++++.++++|
T Consensus       151 ~l~glkva~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~--~~----------~~~~~~~g~~v~~~~d~~eav~~aD  218 (309)
T 4f2g_A          151 PIRGKTVAWVGDANNMLYTWIQAARILDFKLQLSTPPGYAL--DA----------KLVDAESAPFYQVFDDPNEACKGAD  218 (309)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCGGGCC--CG----------GGSCGGGGGGEEECSSHHHHTTTCS
T ss_pred             CCCCCEEEEECCCcchHHHHHHHHHHcCCEEEEECCcccCC--CH----------HHHHHHcCCeEEEEcCHHHHhcCCC
Confidence            47899999999 57788888999999999999987632110  00          0000 00001112468999999999


Q ss_pred             EEEEec----cC---Ch-----hhhcccCHHHHhcCCCCcEEEEcC
Q 017490          252 VVVCCL----SL---NK-----QTAGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       252 iV~l~l----P~---t~-----~t~~li~~~~l~~mk~gailIN~s  285 (370)
                      +|..-.    ..   .+     -..+-++.+.++.+|++++|.-+.
T Consensus       219 vvyt~~w~smg~e~~~~~r~~~~~~y~v~~~~l~~a~~~ai~mH~l  264 (309)
T 4f2g_A          219 LVTTDVWTSMGFEAENEARKRAFADWCVDEEMMSHANSDALFMHCL  264 (309)
T ss_dssp             EEEECCC------------CCSGGGGCBCHHHHTTSCTTCEEEECS
T ss_pred             EEEecccccCcchhhHHHHHHHhcCceeCHHHHHhcCCCeEEECCC
Confidence            998743    10   00     023457889999999999998774

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=96.48  E-value=0.0019  Score=58.37  Aligned_cols=67  Identities=16%  Similarity=0.173  Sum_probs=41.6

Q ss_pred             ceEEEEecCchhHHHHHH--hccCCCEEE-EEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEE
Q 017490          178 KTVFILGFGNIGVELAKR--LRPFGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  254 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~--l~~~G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  254 (370)
                      .+|+|||+|.+|+.+++.  ....|+++. ++|.++......              .....-. ...++++++++.|+|+
T Consensus        86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~--------------i~gv~V~-~~~dl~eli~~~D~Vi  150 (215)
T 2vt3_A           86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTE--------------VGGVPVY-NLDDLEQHVKDESVAI  150 (215)
T ss_dssp             -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCE--------------ETTEEEE-EGGGHHHHCSSCCEEE
T ss_pred             CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhH--------------hcCCeee-chhhHHHHHHhCCEEE
Confidence            479999999999999994  345688765 677765542100              0001101 2457888887679999


Q ss_pred             EeccC
Q 017490          255 CCLSL  259 (370)
Q Consensus       255 l~lP~  259 (370)
                      +++|.
T Consensus       151 IAvPs  155 (215)
T 2vt3_A          151 LTVPA  155 (215)
T ss_dssp             ECSCH
T ss_pred             EecCc
Confidence            99984

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=96.48  E-value=0.0036  Score=66.47  Aligned_cols=150  Identities=16%  Similarity=0.123  Sum_probs=87.3

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccc-cchhhh--cccccccc--ccccCCCCCHHHHHhcCCE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSALAV--KNGIIDDL--VDEKGCHEDIFEFASKADV  252 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~-~~~~~~--~~~~~~~~--~~~~~~~~~l~ell~~aDi  252 (370)
                      ++|||||.|.||..+|..+...|++|+.+|+++......... ...+..  ........  ........+..+.+++||+
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aDl  396 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKELSTVDL  396 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGGGGGSCSE
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHHHHhhCCE
Confidence            699999999999999999999999999999876431110000 000000  00000000  0000011222345789999


Q ss_pred             EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceEEc
Q 017490          253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLIT  332 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilT  332 (370)
                      |+=++|-+.+.+.-+-++.=+.++++++|-.-..  .+....|.+.++ .+-+.+++=.|.+-|   -.||..   |+-+
T Consensus       397 VIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTS--sl~i~~ia~~~~-~p~r~ig~HFfnP~~---~m~LVE---vi~g  467 (742)
T 3zwc_A          397 VVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTS--ALNVDDIASSTD-RPQLVIGTHFFSPAH---VMRLLE---VIPS  467 (742)
T ss_dssp             EEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCS--SSCHHHHHTTSS-CGGGEEEEECCSSTT---TCCEEE---EEEC
T ss_pred             EEEeccccHHHHHHHHHHHhhcCCCCceEEecCC--cCChHHHHhhcC-CccccccccccCCCC---CCceEE---EecC
Confidence            9999998888776555555566899998764433  355666766653 333445666665322   234432   5555


Q ss_pred             cCCC
Q 017490          333 PHVG  336 (370)
Q Consensus       333 PHia  336 (370)
                      |+.+
T Consensus       468 ~~Ts  471 (742)
T 3zwc_A          468 RYSS  471 (742)
T ss_dssp             SSCC
T ss_pred             CCCC
Confidence            5544

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=96.47  E-value=0.035  Score=55.27  Aligned_cols=124  Identities=15%  Similarity=0.135  Sum_probs=72.0

Q ss_pred             cccccCceEEEEecCchhHHHHHHhccCCCEEE-EEcCCCccccc---cccccchhhhccccccccccccCCCCCHHHHH
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKII-ATKRSWASHSQ---VSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA  247 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~-~~dr~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell  247 (370)
                      +.+++|++|.|.|+|++|+.+|+.|...|++|+ +.|.+..-..+   ..+....+....+.+.+...  ....+.++++
T Consensus       230 g~~l~g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~--a~~i~~~ei~  307 (440)
T 3aog_A          230 GLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPK--AEPLPAADFW  307 (440)
T ss_dssp             TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTT--SEECCHHHHT
T ss_pred             CCCccCCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCC--ceEcCchhhh
Confidence            457899999999999999999999999999998 44442110000   00000000000000000000  0112345665


Q ss_pred             h-cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          248 S-KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       248 ~-~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      . .||+++-|..     .+.|+.+....++ ..+++-.+.+++- . +-.+.|.+..+.
T Consensus       308 ~~~~DIlvPcA~-----~n~i~~~na~~l~-ak~VvEgAN~p~t-~-eA~~iL~~~GI~  358 (440)
T 3aog_A          308 GLPVEFLVPAAL-----EKQITEQNAWRIR-ARIVAEGANGPTT-P-AADDILLEKGVL  358 (440)
T ss_dssp             TCCCSEEEECSS-----SSCBCTTTGGGCC-CSEEECCSSSCBC-H-HHHHHHHHHTCE
T ss_pred             cCCCcEEEecCC-----cCccchhhHHHcC-CcEEEecCccccC-H-HHHHHHHHCCCE
Confidence            4 8999988744     3456666666663 5677777888863 3 344666666665

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.45  E-value=0.0051  Score=53.26  Aligned_cols=74  Identities=16%  Similarity=0.165  Sum_probs=49.2

Q ss_pred             CceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccc-cccCCCCCHHHHHhcCCEEE
Q 017490          177 GKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV-DEKGCHEDIFEFASKADVVV  254 (370)
Q Consensus       177 g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~~aDiV~  254 (370)
                      +++|.|+|. |.||+.+++.|...|++|++++|+..+.......        +  .... ......+++.++++.+|+|+
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~--------~--~~~~~~D~~~~~~~~~~~~~~d~vi   72 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPR--------P--AHVVVGDVLQAADVDKTVAGQDAVI   72 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCC--------C--SEEEESCTTSHHHHHHHHTTCSEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCC--------c--eEEEEecCCCHHHHHHHHcCCCEEE
Confidence            478999997 9999999999999999999999875432100000        0  0000 00012235667788999999


Q ss_pred             EeccCC
Q 017490          255 CCLSLN  260 (370)
Q Consensus       255 l~lP~t  260 (370)
                      .+....
T Consensus        73 ~~a~~~   78 (206)
T 1hdo_A           73 VLLGTR   78 (206)
T ss_dssp             ECCCCT
T ss_pred             ECccCC
Confidence            887643

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=96.45  E-value=0.033  Score=55.12  Aligned_cols=124  Identities=19%  Similarity=0.159  Sum_probs=74.6

Q ss_pred             cccccCceEEEEecCchhHHHHHHhccCCCEEE-EEcCCCcccc-ccccc--cchhhhccccccccccccCCCCCHHHHH
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKII-ATKRSWASHS-QVSCQ--SSALAVKNGIIDDLVDEKGCHEDIFEFA  247 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~-~~dr~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~ell  247 (370)
                      +.+++|+||.|-|+|++|+..|+.|...|++|+ +.|.+..-.. .-.+.  ...+....+.+.+..   ....+-++++
T Consensus       216 g~~l~g~~vaVqG~GnVG~~aa~~l~e~GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g~i~~~~---a~~~~~~~i~  292 (424)
T 3k92_A          216 GIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLF---TDVITNEELL  292 (424)
T ss_dssp             TCCGGGCEEEEECCSHHHHHHHHHHHHHTCEEEEEECSSCEEECTTCCCHHHHHHHCCSSSCCGGGC---SCCBCHHHHH
T ss_pred             CCCcccCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHhCCCCCCC---cEEecCccce
Confidence            457999999999999999999999999999986 4554311000 00000  000000000000000   1122445655


Q ss_pred             -hcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceE
Q 017490          248 -SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGG  306 (370)
Q Consensus       248 -~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~g  306 (370)
                       ..|||++-|.     +.+.|+.+....++ -.+++-.+.+++ . .+..+.|.+..|..
T Consensus       293 ~~~~DIliPcA-----~~n~I~~~~a~~l~-ak~V~EgAN~p~-t-~eA~~iL~~rGI~~  344 (424)
T 3k92_A          293 EKDCDILVPAA-----ISNQITAKNAHNIQ-ASIVVERANGPT-T-IDATKILNERGVLL  344 (424)
T ss_dssp             HSCCSEEEECS-----CSSCBCTTTGGGCC-CSEEECCSSSCB-C-HHHHHHHHHTTCEE
T ss_pred             eccccEEeecC-----cccccChhhHhhcC-ceEEEcCCCCCC-C-HHHHHHHHHCCCEE
Confidence             4899998764     34678877777773 567777788885 3 44567788877763

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=96.43  E-value=0.0053  Score=54.35  Aligned_cols=100  Identities=15%  Similarity=0.156  Sum_probs=60.2

Q ss_pred             ceEEEEe-cCchhHHHHHHhc-cCCCEEEEEcCCCc-cccccccccchhhhccccccccc-cccCCCCCHHHHHhcCCEE
Q 017490          178 KTVFILG-FGNIGVELAKRLR-PFGVKIIATKRSWA-SHSQVSCQSSALAVKNGIIDDLV-DEKGCHEDIFEFASKADVV  253 (370)
Q Consensus       178 ~tvGIiG-lG~IG~~vA~~l~-~~G~~V~~~dr~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~~aDiV  253 (370)
                      |++.|.| .|.||+.+++.|. ..|++|++++|+.. ........       ... .... ......++++++++.+|+|
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~-------~~~-~~~~~~D~~d~~~~~~~~~~~d~v   77 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIID-------HER-VTVIEGSFQNPGXLEQAVTNAEVV   77 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHT-------STT-EEEEECCTTCHHHHHHHHTTCSEE
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccC-------CCc-eEEEECCCCCHHHHHHHHcCCCEE
Confidence            5799999 5999999999999 89999999998754 31100000       000 0000 0011224566788999999


Q ss_pred             EEeccCChhhhcccCHHHHhcCCC-C-cEEEEcCCCcc
Q 017490          254 VCCLSLNKQTAGIVNKSFLSSMKK-G-SLLVNIARGGL  289 (370)
Q Consensus       254 ~l~lP~t~~t~~li~~~~l~~mk~-g-ailIN~sRg~~  289 (370)
                      +.+..... ..   ....+..|+. | ..+|++|....
T Consensus        78 v~~ag~~n-~~---~~~~~~~~~~~~~~~iv~iSs~~~  111 (221)
T 3r6d_A           78 FVGAMESG-SD---MASIVKALSRXNIRRVIGVSMAGL  111 (221)
T ss_dssp             EESCCCCH-HH---HHHHHHHHHHTTCCEEEEEEETTT
T ss_pred             EEcCCCCC-hh---HHHHHHHHHhcCCCeEEEEeecee
Confidence            98876431 11   3344444432 2 36888876443

>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A

Probab=96.40  E-value=0.011  Score=56.24  Aligned_cols=93  Identities=20%  Similarity=0.131  Sum_probs=66.6

Q ss_pred             cccCceEEEEecC---chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490          174 TLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  250 (370)
Q Consensus       174 ~l~g~tvGIiGlG---~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  250 (370)
                      .+.|++|++||=|   ++.++++..+..+|++|.+..|..-.   +               +. ...+...++++.++.+
T Consensus       144 ~l~glkva~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~---~---------------~~-~~~g~~~d~~eav~~a  204 (304)
T 3r7f_A          144 TFKGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQ---D---------------EE-NTFGTYVSMDEAVESS  204 (304)
T ss_dssp             CCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGS---C---------------TT-CSSCEECCHHHHHHHC
T ss_pred             CCCCCEEEEEcCCCCcchHHHHHHHHHHcCCEEEEECCCccC---c---------------ch-hhcCccCCHHHHhCCC
Confidence            4789999999975   69999999999999999998653211   0               00 1122346899999999


Q ss_pred             CEEEEeccCCh---------h--hhcccCHHHHhcCCCCcEEEEcC
Q 017490          251 DVVVCCLSLNK---------Q--TAGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       251 DiV~l~lP~t~---------~--t~~li~~~~l~~mk~gailIN~s  285 (370)
                      |+|..-.--.+         +  ..+-++.+.++.+|++++|.-+.
T Consensus       205 Dvvyt~~~q~er~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mHcl  250 (304)
T 3r7f_A          205 DVVMLLRIQNERHQSAVSQEGYLNKYGLTVERAERMKRHAIIMHPA  250 (304)
T ss_dssp             SEEEECCCCTTTCCSSCCSTTHHHHHSBCHHHHTTSCTTCEEECCS
T ss_pred             CEEEeccchhhccccchhHHHHhCCCccCHHHHhhcCCCCEEECCC
Confidence            99987421111         1  12457888999999999998764

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=96.40  E-value=0.0024  Score=61.89  Aligned_cols=73  Identities=21%  Similarity=0.243  Sum_probs=48.1

Q ss_pred             CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEe
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  256 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  256 (370)
                      .++|+|+|.|.+|+.+|+.|+. ..+|.+.|++.+.......          ............+++.++++++|+|+++
T Consensus        16 ~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~----------~~~~~~~d~~d~~~l~~~~~~~DvVi~~   84 (365)
T 3abi_A           16 HMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKE----------FATPLKVDASNFDKLVEVMKEFELVIGA   84 (365)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTT----------TSEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred             ccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhc----------cCCcEEEecCCHHHHHHHHhCCCEEEEe
Confidence            3479999999999999999976 5789999887543211000          0000000011234577889999999999


Q ss_pred             ccCC
Q 017490          257 LSLN  260 (370)
Q Consensus       257 lP~t  260 (370)
                      +|..
T Consensus        85 ~p~~   88 (365)
T 3abi_A           85 LPGF   88 (365)
T ss_dssp             CCGG
T ss_pred             cCCc
Confidence            9854

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=96.39  E-value=0.0026  Score=57.33  Aligned_cols=90  Identities=14%  Similarity=0.138  Sum_probs=54.9

Q ss_pred             CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCC---HHHH-HhcCCE
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHED---IFEF-ASKADV  252 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~el-l~~aDi  252 (370)
                      .+++.|+|+|.+|+.+|+.|...|+ |+++|+++......       .  .    ....-.+...+   +++. +.++|.
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~-------~--~----~~~~i~gd~~~~~~l~~a~i~~ad~   74 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVL-------R--S----GANFVHGDPTRVSDLEKANVRGARA   74 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHH-------H--T----TCEEEESCTTCHHHHHHTTCTTCSE
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHH-------h--c----CCeEEEcCCCCHHHHHhcCcchhcE
Confidence            4578999999999999999999999 99999875431100       0  0    00000112233   3333 678999


Q ss_pred             EEEeccCChhhhcccCHHHHhcCCCCcEEE
Q 017490          253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLV  282 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~~l~~mk~gailI  282 (370)
                      |++++|....+  +.-....+.+.++..+|
T Consensus        75 vi~~~~~d~~n--~~~~~~a~~~~~~~~ii  102 (234)
T 2aef_A           75 VIVDLESDSET--IHCILGIRKIDESVRII  102 (234)
T ss_dssp             EEECCSCHHHH--HHHHHHHHHHCSSSEEE
T ss_pred             EEEcCCCcHHH--HHHHHHHHHHCCCCeEE
Confidence            99998865333  22234455566663333

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=96.38  E-value=0.0046  Score=58.92  Aligned_cols=66  Identities=8%  Similarity=0.162  Sum_probs=47.6

Q ss_pred             ceEEEEecCchhH-HHHHHhccCCCEE-EEEcCCCccccccccccchhhhcccccccccccc-C--CCCCHHHHHh--cC
Q 017490          178 KTVFILGFGNIGV-ELAKRLRPFGVKI-IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-G--CHEDIFEFAS--KA  250 (370)
Q Consensus       178 ~tvGIiGlG~IG~-~vA~~l~~~G~~V-~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~l~ell~--~a  250 (370)
                      .+|||||+|.+|. .+++.++..|++| .++|+++.+..                 .....+ +  .+.+++++++  +.
T Consensus         5 ~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~-----------------~~a~~~~~~~~~~~~~~ll~~~~~   67 (336)
T 2p2s_A            5 IRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRA-----------------KFTSLFPSVPFAASAEQLITDASI   67 (336)
T ss_dssp             CEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCH-----------------HHHHHSTTCCBCSCHHHHHTCTTC
T ss_pred             cEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHH-----------------HHHHhcCCCcccCCHHHHhhCCCC
Confidence            4799999999996 6777776678986 57888765421                 111122 1  3578999997  68


Q ss_pred             CEEEEeccCC
Q 017490          251 DVVVCCLSLN  260 (370)
Q Consensus       251 DiV~l~lP~t  260 (370)
                      |+|++++|..
T Consensus        68 D~V~i~tp~~   77 (336)
T 2p2s_A           68 DLIACAVIPC   77 (336)
T ss_dssp             CEEEECSCGG
T ss_pred             CEEEEeCChh
Confidence            9999999854

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.38  E-value=0.01  Score=59.35  Aligned_cols=103  Identities=20%  Similarity=0.307  Sum_probs=69.4

Q ss_pred             cccccCceEEEEecC----------chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCC
Q 017490          172 GETLLGKTVFILGFG----------NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHE  241 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG----------~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (370)
                      +..+.|++|+|+|+.          .-...+++.|...|++|.+||+......                ...........
T Consensus       317 ~~~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~~~----------------~~~~~~~~~~~  380 (446)
T 4a7p_A          317 GGDVRGKTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEGVEQA----------------SKMLTDVEFVE  380 (446)
T ss_dssp             TSCCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSCEEEEECSSCHHHH----------------GGGCSSCCBCS
T ss_pred             cccCCCCEEEEEEEEeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCCHhH----------------HHhcCCceEec
Confidence            456899999999997          6788999999999999999998753210                00000011125


Q ss_pred             CHHHHHhcCCEEEEeccCChhhhcccCHHHHh-cCCCCcEEEEcCCCcccCHHHH
Q 017490          242 DIFEFASKADVVVCCLSLNKQTAGIVNKSFLS-SMKKGSLLVNIARGGLLDYEAI  295 (370)
Q Consensus       242 ~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~-~mk~gailIN~sRg~~vd~~aL  295 (370)
                      ++++.++.+|+|++++... +.+. ++-+.+. .|+ +.+++|+ |+ +.|.+.+
T Consensus       381 ~~~~~~~~ad~vvi~t~~~-~f~~-~d~~~~~~~~~-~~~i~D~-r~-~~~~~~~  430 (446)
T 4a7p_A          381 NPYAAADGADALVIVTEWD-AFRA-LDLTRIKNSLK-SPVLVDL-RN-IYPPAEL  430 (446)
T ss_dssp             CHHHHHTTBSEEEECSCCT-TTTS-CCHHHHHTTBS-SCBEECS-SC-CSCHHHH
T ss_pred             ChhHHhcCCCEEEEeeCCH-Hhhc-CCHHHHHHhcC-CCEEEEC-CC-CCCHHHH
Confidence            7889999999999998743 3333 4555444 465 4678885 54 3455444

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.37  E-value=0.0032  Score=56.40  Aligned_cols=80  Identities=20%  Similarity=0.206  Sum_probs=50.7

Q ss_pred             CcccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhc
Q 017490          171 TGETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK  249 (370)
Q Consensus       171 ~~~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  249 (370)
                      ....+.|++|.|.|. |.||+.+++.|...|++|++++|+..+.......  ..       ......-.. +++.+.+..
T Consensus        15 ~~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~--~~-------~~~~~~Dl~-~~~~~~~~~   84 (236)
T 3e8x_A           15 ENLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRER--GA-------SDIVVANLE-EDFSHAFAS   84 (236)
T ss_dssp             ------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHT--TC-------SEEEECCTT-SCCGGGGTT
T ss_pred             cccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhC--CC-------ceEEEcccH-HHHHHHHcC
Confidence            346789999999997 9999999999999999999999976542110000  00       000000001 567788889


Q ss_pred             CCEEEEeccCC
Q 017490          250 ADVVVCCLSLN  260 (370)
Q Consensus       250 aDiV~l~lP~t  260 (370)
                      +|+|+.+....
T Consensus        85 ~D~vi~~ag~~   95 (236)
T 3e8x_A           85 IDAVVFAAGSG   95 (236)
T ss_dssp             CSEEEECCCCC
T ss_pred             CCEEEECCCCC
Confidence            99999887644

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.37  E-value=0.0049  Score=55.38  Aligned_cols=103  Identities=19%  Similarity=0.148  Sum_probs=62.5

Q ss_pred             ccCceEEEEe-cCchhHHHHHHhccCC-CEEEEEcCCCccccccccccchhhhccccccccc-cccCCCCCHHHHHhcCC
Q 017490          175 LLGKTVFILG-FGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV-DEKGCHEDIFEFASKAD  251 (370)
Q Consensus       175 l~g~tvGIiG-lG~IG~~vA~~l~~~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~~aD  251 (370)
                      ...++|.|.| .|.||+.+++.|...| ++|++++|+..+.......         . .... ......++++++++.+|
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~---------~-~~~~~~Dl~d~~~~~~~~~~~D   90 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPT---------N-SQIIMGDVLNHAALKQAMQGQD   90 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCT---------T-EEEEECCTTCHHHHHHHHTTCS
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccC---------C-cEEEEecCCCHHHHHHHhcCCC
Confidence            4468999999 6999999999999999 8999999876542110000         0 0000 00112245677889999


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCC--CcEEEEcCCCcc
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKK--GSLLVNIARGGL  289 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~--gailIN~sRg~~  289 (370)
                      +|+.+........  .....+..|+.  ...||++|....
T Consensus        91 ~vv~~a~~~~~~~--~~~~~~~~~~~~~~~~iV~iSS~~~  128 (236)
T 3qvo_A           91 IVYANLTGEDLDI--QANSVIAAMKACDVKRLIFVLSLGI  128 (236)
T ss_dssp             EEEEECCSTTHHH--HHHHHHHHHHHTTCCEEEEECCCCC
T ss_pred             EEEEcCCCCchhH--HHHHHHHHHHHcCCCEEEEEeccee
Confidence            9998876432211  11234444432  246888887443

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=96.34  E-value=0.0029  Score=63.36  Aligned_cols=114  Identities=13%  Similarity=0.080  Sum_probs=67.2

Q ss_pred             cCceEEEEecCchh--HHHHHHhcc----CCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhc
Q 017490          176 LGKTVFILGFGNIG--VELAKRLRP----FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK  249 (370)
Q Consensus       176 ~g~tvGIiGlG~IG--~~vA~~l~~----~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  249 (370)
                      ...+|+|||.|.+|  ..+++.+..    .| +|..||+...........      .. .............++++.++.
T Consensus         4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~------~~-~l~~~~~~I~~TtD~~eAl~d   75 (450)
T 3fef_A            4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVI------GN-HSGNGRWRYEAVSTLKKALSA   75 (450)
T ss_dssp             CCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHH------HT-TSTTSCEEEEEESSHHHHHTT
T ss_pred             CCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHH------HH-HHhccCCeEEEECCHHHHhcC
Confidence            45799999999984  677776543    46 999999875431100000      00 000000011123689999999


Q ss_pred             CCEEEEeccCC-----------hhhhcccCH------------------------HHHhcCCCCcEEEEcCCCcccCHHH
Q 017490          250 ADVVVCCLSLN-----------KQTAGIVNK------------------------SFLSSMKKGSLLVNIARGGLLDYEA  294 (370)
Q Consensus       250 aDiV~l~lP~t-----------~~t~~li~~------------------------~~l~~mk~gailIN~sRg~~vd~~a  294 (370)
                      ||+|+++++.-           |...|+...                        +.+....|++++||.+..--+-..+
T Consensus        76 ADfVI~airvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~p~a~~i~~tNPvdi~t~~  155 (450)
T 3fef_A           76 ADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRV  155 (450)
T ss_dssp             CSEEEECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHH
T ss_pred             CCEEEeccccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHH
Confidence            99999999632           333344211                        1233446899999998765444444


Q ss_pred             HHH
Q 017490          295 IAH  297 (370)
Q Consensus       295 L~~  297 (370)
                      +.+
T Consensus       156 ~~k  158 (450)
T 3fef_A          156 LYK  158 (450)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=96.33  E-value=0.0023  Score=60.48  Aligned_cols=104  Identities=18%  Similarity=0.199  Sum_probs=59.6

Q ss_pred             CceEEEEecCchhHHHHHHhccCCC--EEEEEcCCCccccc-cccccchhhhccccccccccccCCCCCHHHHHhcCCEE
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQ-VSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  253 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  253 (370)
                      .++|+|||.|.||..+|..|...|.  +|..+|++...... ..+......+.     ... ......+. +.++.||+|
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~-----~~~-~v~~~~~~-~~~~~aD~V   79 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFY-----PTV-SIDGSDDP-EICRDADMV   79 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGS-----TTC-EEEEESCG-GGGTTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhc-----CCe-EEEeCCCH-HHhCCCCEE
Confidence            4689999999999999999988898  99999987532110 00000000000     000 00001133 467899999


Q ss_pred             EEeccCChhhhc------------ccC--HHHHhcCCCCcEEEEcCCCc
Q 017490          254 VCCLSLNKQTAG------------IVN--KSFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       254 ~l~lP~t~~t~~------------li~--~~~l~~mk~gailIN~sRg~  288 (370)
                      +++++... ..+            ++.  .+.++...+++++|+++.|-
T Consensus        80 ii~v~~~~-~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~Np~  127 (319)
T 1lld_A           80 VITAGPRQ-KPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPV  127 (319)
T ss_dssp             EECCCCCC-CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSH
T ss_pred             EECCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecCch
Confidence            99996321 111            000  11222236889999987764

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=96.29  E-value=0.0024  Score=60.95  Aligned_cols=102  Identities=18%  Similarity=0.236  Sum_probs=58.1

Q ss_pred             CceEEEEecCchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhcccccccccc-ccCCCCCHHHHHhcCCEE
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVV  253 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV  253 (370)
                      -++|+|||.|.||..+|..++..|.  +|..+|++..... ...  .++...    ..... ......+..+.++.||+|
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~-~~~--~dl~~~----~~~~~~~~~i~~~~~~al~~aDvV   78 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAI-GDA--MDFNHG----KVFAPKPVDIWHGDYDDCRDADLV   78 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHH-HHH--HHHHHH----TTSSSSCCEEEECCGGGTTTCSEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHH-HHH--hhHHHH----hhhcCCCeEEEcCcHHHhCCCCEE
Confidence            4689999999999999999876564  8999998753211 000  000000    00000 000001234678999999


Q ss_pred             EEeccCChhhhcc-----c--C----H---HHHhcCCCCcEEEEcCC
Q 017490          254 VCCLSLNKQTAGI-----V--N----K---SFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       254 ~l~lP~t~~t~~l-----i--~----~---~~l~~mk~gailIN~sR  286 (370)
                      +++.|... ..++     +  |    .   +.+....|++++++.+.
T Consensus        79 iia~~~~~-~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tN  124 (316)
T 1ldn_A           79 VICAGANQ-KPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN  124 (316)
T ss_dssp             EECCSCCC-CTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred             EEcCCCCC-CCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCC
Confidence            99977432 1111     1  0    1   12333358899999855

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=96.28  E-value=0.0064  Score=56.20  Aligned_cols=99  Identities=26%  Similarity=0.288  Sum_probs=65.7

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCEE-EEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEE
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVKI-IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  254 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V-~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  254 (370)
                      +..+|+++|+|+||+.+++.  . ++++ .+|+  .+.                  .++  ......++++++.++|+|+
T Consensus        11 ~~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~--~k~------------------gel--gv~a~~d~d~lla~pD~VV   65 (253)
T 1j5p_A           11 HHMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD--RIS------------------KDI--PGVVRLDEFQVPSDVSTVV   65 (253)
T ss_dssp             CCCEEEEECCSHHHHHHHHH--S-CCSEEEEEC--SSC------------------CCC--SSSEECSSCCCCTTCCEEE
T ss_pred             ccceEEEECcCHHHHHHHhc--C-CcEEEEEEe--ccc------------------ccc--CceeeCCHHHHhhCCCEEE
Confidence            46789999999999999998  4 7875 4555  111                  111  0012356788888999887


Q ss_pred             EeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHhCCc
Q 017490          255 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDY---EAIAHYLECGHL  304 (370)
Q Consensus       255 l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~---~aL~~aL~~g~i  304 (370)
                      =|.+ .+.    +.....+.++.|.-+|-+|-|.+.|.   +.|.++.++|.-
T Consensus        66 e~A~-~~a----v~e~~~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg~  113 (253)
T 1j5p_A           66 ECAS-PEA----VKEYSLQILKNPVNYIIISTSAFADEVFRERFFSELKNSPA  113 (253)
T ss_dssp             ECSC-HHH----HHHHHHHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCSC
T ss_pred             ECCC-HHH----HHHHHHHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCCC
Confidence            7653 222    22224555888999999998888886   455566665543

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=96.25  E-value=0.0032  Score=60.70  Aligned_cols=67  Identities=15%  Similarity=0.133  Sum_probs=45.1

Q ss_pred             CceEEEEecCchhHHHHHHhccC--------CCEEE-EEcCCCccccccccccchhhhccccccccccccC---CCCCHH
Q 017490          177 GKTVFILGFGNIGVELAKRLRPF--------GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIF  244 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~--------G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~  244 (370)
                      --+|||||+|.||+.-++.++.+        +++|. ++|++.....                 ....+++   .+.+++
T Consensus        25 kirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~-----------------~~a~~~g~~~~y~d~~   87 (393)
T 4fb5_A           25 PLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAE-----------------ARAGEFGFEKATADWR   87 (393)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHH-----------------HHHHHHTCSEEESCHH
T ss_pred             CccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHH-----------------HHHHHhCCCeecCCHH
Confidence            34899999999999887766543        56755 5677765421                 1222222   357899


Q ss_pred             HHHh--cCCEEEEeccCC
Q 017490          245 EFAS--KADVVVCCLSLN  260 (370)
Q Consensus       245 ell~--~aDiV~l~lP~t  260 (370)
                      ++++  +.|+|++++|..
T Consensus        88 ell~~~~iDaV~IatP~~  105 (393)
T 4fb5_A           88 ALIADPEVDVVSVTTPNQ  105 (393)
T ss_dssp             HHHHCTTCCEEEECSCGG
T ss_pred             HHhcCCCCcEEEECCChH
Confidence            9996  579999999943

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=96.23  E-value=0.0019  Score=61.81  Aligned_cols=66  Identities=14%  Similarity=0.153  Sum_probs=45.5

Q ss_pred             ceEEEEecCchhHH-HHHHhccC-CCEEE-EEcCCCccccccccccchhhhccccccccccccC---CCCCHHHHHh--c
Q 017490          178 KTVFILGFGNIGVE-LAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFAS--K  249 (370)
Q Consensus       178 ~tvGIiGlG~IG~~-vA~~l~~~-G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~--~  249 (370)
                      .++||||+|.||+. .+..++.. +++|. ++|+++.+.                 .+..++++   .+.+++++++  +
T Consensus        24 irigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a-----------------~~~a~~~g~~~~y~d~~ell~~~~   86 (350)
T 4had_A           24 LRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRA-----------------REMADRFSVPHAFGSYEEMLASDV   86 (350)
T ss_dssp             EEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHH-----------------HHHHHHHTCSEEESSHHHHHHCSS
T ss_pred             cEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHH-----------------HHHHHHcCCCeeeCCHHHHhcCCC
Confidence            48999999999986 46666554 67876 578765432                 11222222   3579999996  4


Q ss_pred             CCEEEEeccCC
Q 017490          250 ADVVVCCLSLN  260 (370)
Q Consensus       250 aDiV~l~lP~t  260 (370)
                      .|+|++++|..
T Consensus        87 iDaV~I~tP~~   97 (350)
T 4had_A           87 IDAVYIPLPTS   97 (350)
T ss_dssp             CSEEEECSCGG
T ss_pred             CCEEEEeCCCc
Confidence            79999999943

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.23  E-value=0.0077  Score=53.29  Aligned_cols=72  Identities=17%  Similarity=0.230  Sum_probs=48.5

Q ss_pred             ceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCCCCHHHHHhcCCEEEE
Q 017490          178 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVVC  255 (370)
Q Consensus       178 ~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~l  255 (370)
                      ++|.|.| .|.||+.+++.|...|++|++.+|+..+......   .        ..... .....++++++++.+|+|+.
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~---~--------~~~~~~Dl~d~~~~~~~~~~~d~vi~   73 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENE---H--------LKVKKADVSSLDEVCEVCKGADAVIS   73 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCT---T--------EEEECCCTTCHHHHHHHHTTCSEEEE
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccC---c--------eEEEEecCCCHHHHHHHhcCCCEEEE
Confidence            6899999 5999999999999999999999998654211000   0        00000 01122456778899999988


Q ss_pred             eccCC
Q 017490          256 CLSLN  260 (370)
Q Consensus       256 ~lP~t  260 (370)
                      +....
T Consensus        74 ~a~~~   78 (227)
T 3dhn_A           74 AFNPG   78 (227)
T ss_dssp             CCCC-
T ss_pred             eCcCC
Confidence            87543

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.23  E-value=0.0027  Score=60.87  Aligned_cols=90  Identities=17%  Similarity=0.190  Sum_probs=60.6

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCC---CCCHHHHHhcCCE
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC---HEDIFEFASKADV  252 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~ell~~aDi  252 (370)
                      .|.+|.|+|.|.||...++.++.+|++|++.+++..+..                  .+.+.+.   ..+.+++.+..|+
T Consensus       176 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~------------------~~~~lGa~~v~~~~~~~~~~~D~  237 (348)
T 3two_A          176 KGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQ------------------DALSMGVKHFYTDPKQCKEELDF  237 (348)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHH------------------HHHHTTCSEEESSGGGCCSCEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHH------------------HHHhcCCCeecCCHHHHhcCCCE
Confidence            588999999999999999999999999999998765521                  1111110   0122222236788


Q ss_pred             EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490          253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~  288 (370)
                      |+-++.....     -...++.++++..++.++...
T Consensus       238 vid~~g~~~~-----~~~~~~~l~~~G~iv~~G~~~  268 (348)
T 3two_A          238 IISTIPTHYD-----LKDYLKLLTYNGDLALVGLPP  268 (348)
T ss_dssp             EEECCCSCCC-----HHHHHTTEEEEEEEEECCCCC
T ss_pred             EEECCCcHHH-----HHHHHHHHhcCCEEEEECCCC
Confidence            8887764321     135667788888888886543

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=96.21  E-value=0.0077  Score=59.12  Aligned_cols=96  Identities=10%  Similarity=0.107  Sum_probs=64.6

Q ss_pred             CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEe
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  256 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  256 (370)
                      -.++-|+|.|.+|+++++.++.+|++|+++|++..-.                            + .+.+..+|-++..
T Consensus       204 ~~rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~~~~----------------------------~-~~~fp~a~~~~~~  254 (386)
T 2we8_A          204 RPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVFA----------------------------T-TARFPTADEVVVD  254 (386)
T ss_dssp             CCEEEEECCSTHHHHHHHHHHHTTCEEEEEESCTTTS----------------------------C-TTTCSSSSEEEES
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhc----------------------------c-cccCCCceEEEeC
Confidence            3489999999999999999999999999999764310                            0 0113455544444


Q ss_pred             ccCChhhhcccCHHHHh---cCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEE
Q 017490          257 LSLNKQTAGIVNKSFLS---SMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLG  308 (370)
Q Consensus       257 lP~t~~t~~li~~~~l~---~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~  308 (370)
                      .|.  +   .+.  .+.   .+.+++.+|=+.++.-.|...|..+|+.+...+.|
T Consensus       255 ~p~--~---~~~--~~~~~~~~~~~t~vvvlTh~~~~D~~~L~~aL~~~~~~YIG  302 (386)
T 2we8_A          255 WPH--R---YLA--AQAEAGAIDARTVVCVLTHDPKFDVPLLEVALRLPDIAYIG  302 (386)
T ss_dssp             CHH--H---HHH--HHHHHTCCCTTCEEEECCCCHHHHHHHHHHHTTSSCCSEEE
T ss_pred             ChH--H---HHH--hhccccCCCCCcEEEEEECChHhHHHHHHHHhcCCCCCEEE
Confidence            331  1   011  011   15677888888888888888888888887344443

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=96.19  E-value=0.0056  Score=58.44  Aligned_cols=126  Identities=16%  Similarity=0.180  Sum_probs=67.6

Q ss_pred             CceEEEEecCchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhcccccccccccc-CCCCCHHHHHhcCCEE
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-GCHEDIFEFASKADVV  253 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ell~~aDiV  253 (370)
                      ..+|+|||.|.+|.++|..+...|.  +|..+|....+.....   .++.  +.  ....... ....+ .+.++.||+|
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~---~dl~--~~--~~~~~~~~i~~~~-~~a~~~aDvV   78 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEA---MDIN--HG--LPFMGQMSLYAGD-YSDVKDCDVI   78 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHH---HHHT--TS--CCCTTCEEEC--C-GGGGTTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHH---HHHH--Hh--HHhcCCeEEEECC-HHHhCCCCEE
Confidence            3589999999999999999987787  9999998754321000   0000  00  0000000 01123 5668999999


Q ss_pred             EEeccCChhhhcc-------cC-------HHHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHhCCceEEE--Eec
Q 017490          254 VCCLSLNKQTAGI-------VN-------KSFLSSMKKGSLLVNIARGGLLDYEAIAHY--LECGHLGGLG--IDV  311 (370)
Q Consensus       254 ~l~lP~t~~t~~l-------i~-------~~~l~~mk~gailIN~sRg~~vd~~aL~~a--L~~g~i~ga~--lDV  311 (370)
                      +++.+.. ...+.       .|       .+.+....|++++|+++..-=+....+.+.  +...++.|.+  ||+
T Consensus        79 ii~~g~p-~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~~~~~~k~s~~p~~rviG~gt~Ld~  153 (318)
T 1y6j_A           79 VVTAGAN-RKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDIITYMIQKWSGLPVGKVIGSGTVLDS  153 (318)
T ss_dssp             EECCCC-------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHHHHHHHHHHHHTCCTTTEEECTTHHHH
T ss_pred             EEcCCCC-CCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHHHHHHcCCCHHHEeccCCchHH
Confidence            9998743 22221       01       112333368999999754322333334333  2334666652  563

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=96.19  E-value=0.0078  Score=56.62  Aligned_cols=106  Identities=15%  Similarity=0.185  Sum_probs=66.1

Q ss_pred             CceEEEEec-CchhHHHHHHhccCCCEEE-EEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHh--cCCE
Q 017490          177 GKTVFILGF-GNIGVELAKRLRPFGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADV  252 (370)
Q Consensus       177 g~tvGIiGl-G~IG~~vA~~l~~~G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDi  252 (370)
                      ..+|+|+|+ |.+|+.+++.++..|++++ .+|+......                .....   .+.+++++..  ..|+
T Consensus         7 ~~rVaViG~sG~~G~~~~~~l~~~g~~~V~~V~p~~~g~~----------------~~G~~---vy~sl~el~~~~~~D~   67 (288)
T 2nu8_A            7 NTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTT----------------HLGLP---VFNTVREAVAATGATA   67 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCE----------------ETTEE---EESSHHHHHHHHCCCE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCcccce----------------eCCee---ccCCHHHHhhcCCCCE
Confidence            468999999 9999999999988899844 5665421000                00011   3568999988  8999


Q ss_pred             EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc-ccCHHHHHHHHHhCCce
Q 017490          253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG-LLDYEAIAHYLECGHLG  305 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~-~vd~~aL~~aL~~g~i~  305 (370)
                      +++++|.. ....++. +.++. ... .+|..+-|- .-+.+.|.++.++..+.
T Consensus        68 viI~tP~~-~~~~~~~-ea~~~-Gi~-~iVi~t~G~~~~~~~~l~~~A~~~gv~  117 (288)
T 2nu8_A           68 SVIYVPAP-FCKDSIL-EAIDA-GIK-LIITITEGIPTLDMLTVKVKLDEAGVR  117 (288)
T ss_dssp             EEECCCGG-GHHHHHH-HHHHT-TCS-EEEECCCCCCHHHHHHHHHHHHHHTCE
T ss_pred             EEEecCHH-HHHHHHH-HHHHC-CCC-EEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            99999953 3333332 22221 222 234454443 23445888888877664

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=96.17  E-value=0.0072  Score=55.55  Aligned_cols=81  Identities=16%  Similarity=0.192  Sum_probs=51.9

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEE-EcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEe
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  256 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~-~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  256 (370)
                      .+|+|+|+|+||+.+++.+...+.++.+ +|+.....                  ..+   ..+.++++++ ++|+|+-.
T Consensus         4 mkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~~------------------~gv---~v~~dl~~l~-~~DVvIDf   61 (243)
T 3qy9_A            4 MKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKAT------------------TPY---QQYQHIADVK-GADVAIDF   61 (243)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC--------------------CCS---CBCSCTTTCT-TCSEEEEC
T ss_pred             eEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCcccc------------------CCC---ceeCCHHHHh-CCCEEEEe
Confidence            4799999999999999999876557654 78764320                  000   0235677777 99998744


Q ss_pred             ccCChhhhcccCHHHHhcCCCCcEEEEcCCC
Q 017490          257 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       257 lP~t~~t~~li~~~~l~~mk~gailIN~sRg  287 (370)
                      .+. ..+.     +.+. ++.|.-+|....|
T Consensus        62 t~p-~a~~-----~~~~-l~~g~~vVigTTG   85 (243)
T 3qy9_A           62 SNP-NLLF-----PLLD-EDFHLPLVVATTG   85 (243)
T ss_dssp             SCH-HHHH-----HHHT-SCCCCCEEECCCS
T ss_pred             CCh-HHHH-----HHHH-HhcCCceEeCCCC
Confidence            321 2222     2333 7777777765556

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=96.16  E-value=0.0023  Score=60.85  Aligned_cols=99  Identities=13%  Similarity=0.232  Sum_probs=57.1

Q ss_pred             ceEEEEecCchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  255 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  255 (370)
                      ++|+|||.|.+|..+|..+...|.  +|..+|..........+    +....      ........++ +.++.||+|++
T Consensus        15 ~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~d----l~~~~------~~~i~~t~d~-~~l~~aD~Vi~   83 (303)
T 2i6t_A           15 NKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMD----LEIFN------LPNVEISKDL-SASAHSKVVIF   83 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHH----HHHHT------CTTEEEESCG-GGGTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHH----Hhhhc------CCCeEEeCCH-HHHCCCCEEEE
Confidence            689999999999999999887777  99999987532101111    10000      0011112456 66899999999


Q ss_pred             eccCCh----------hhhcccC--HHHHhcCCCCcEEEEcCCC
Q 017490          256 CLSLNK----------QTAGIVN--KSFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       256 ~lP~t~----------~t~~li~--~~~l~~mk~gailIN~sRg  287 (370)
                      +.....          .+..++-  .+.+....|.+++|+++..
T Consensus        84 aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sNP  127 (303)
T 2i6t_A           84 TVNSLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQP  127 (303)
T ss_dssp             CCCC----CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSSS
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCCh
Confidence            973210          1111110  0123333589999998874

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=96.15  E-value=0.0039  Score=61.74  Aligned_cols=40  Identities=20%  Similarity=0.237  Sum_probs=35.8

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      .-+.|++|+|+|-|.+|+.+++.++.+|++|+++|+++..
T Consensus        31 ~~~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~~   70 (419)
T 4e4t_A           31 PILPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPAS   70 (419)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTTC
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCcC
Confidence            3568999999999999999999999999999999976543

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=96.13  E-value=0.0044  Score=59.54  Aligned_cols=66  Identities=14%  Similarity=0.070  Sum_probs=46.0

Q ss_pred             ceEEEEecCchhHH-HHHHhccC-CCEEE-EEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhc--CCE
Q 017490          178 KTVFILGFGNIGVE-LAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK--ADV  252 (370)
Q Consensus       178 ~tvGIiGlG~IG~~-vA~~l~~~-G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDi  252 (370)
                      .+|||||+|.||+. .++.++.. +++|. ++|++..+..                 ........+.++++++..  .|+
T Consensus         8 ~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~-----------------~~~~~~~~~~~~~~ll~~~~vD~   70 (352)
T 3kux_A            8 IKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVH-----------------ADWPAIPVVSDPQMLFNDPSIDL   70 (352)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH-----------------TTCSSCCEESCHHHHHHCSSCCE
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHH-----------------hhCCCCceECCHHHHhcCCCCCE
Confidence            58999999999997 77777665 77865 6777643310                 000001134789999975  899


Q ss_pred             EEEeccCC
Q 017490          253 VVCCLSLN  260 (370)
Q Consensus       253 V~l~lP~t  260 (370)
                      |++++|..
T Consensus        71 V~i~tp~~   78 (352)
T 3kux_A           71 IVIPTPND   78 (352)
T ss_dssp             EEECSCTT
T ss_pred             EEEeCChH
Confidence            99999854

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=96.13  E-value=0.012  Score=56.74  Aligned_cols=98  Identities=22%  Similarity=0.301  Sum_probs=62.2

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHh-----c
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----K  249 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~  249 (370)
                      .|.+|.|+|.|.||...++.++.+|+ +|++.+++..+.......        + ++..++......++.+.+.     .
T Consensus       192 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l--------G-a~~vi~~~~~~~~~~~~~~~~~~~g  262 (374)
T 1cdo_A          192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF--------G-ATDFVNPNDHSEPISQVLSKMTNGG  262 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT--------T-CCEEECGGGCSSCHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh--------C-CceEEeccccchhHHHHHHHHhCCC
Confidence            58899999999999999999999999 899999875542110000        0 0000000000123444333     4


Q ss_pred             CCEEEEeccCChhhhcccCHHHHhcCCCC-cEEEEcCCC
Q 017490          250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKG-SLLVNIARG  287 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~li~~~~l~~mk~g-ailIN~sRg  287 (370)
                      .|+|+-++...+.     -...++.++++ ..++.++-.
T Consensus       263 ~D~vid~~g~~~~-----~~~~~~~l~~~~G~iv~~G~~  296 (374)
T 1cdo_A          263 VDFSLECVGNVGV-----MRNALESCLKGWGVSVLVGWT  296 (374)
T ss_dssp             BSEEEECSCCHHH-----HHHHHHTBCTTTCEEEECSCC
T ss_pred             CCEEEECCCCHHH-----HHHHHHHhhcCCcEEEEEcCC
Confidence            7999988764222     13567788998 888888753

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=96.11  E-value=0.0072  Score=49.62  Aligned_cols=100  Identities=19%  Similarity=0.167  Sum_probs=67.9

Q ss_pred             ceEEEEec----CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEE
Q 017490          178 KTVFILGF----GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  253 (370)
Q Consensus       178 ~tvGIiGl----G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  253 (370)
                      ++|+|||.    |..|..+.+.|+..|++|+.+++....                  .....   .+.++.++-. -|++
T Consensus         5 ~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~------------------i~G~~---~y~sl~dlp~-vDla   62 (122)
T 3ff4_A            5 KKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGE------------------VLGKT---IINERPVIEG-VDTV   62 (122)
T ss_dssp             CCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSE------------------ETTEE---CBCSCCCCTT-CCEE
T ss_pred             CEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCc------------------CCCee---ccCChHHCCC-CCEE
Confidence            68999997    568999999999999999999876432                  01111   3455666656 8999


Q ss_pred             EEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceE
Q 017490          254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGG  306 (370)
Q Consensus       254 ~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~g  306 (370)
                      ++++|. +.+..++.+-  ..+...+++++.  |-  .++++.+..++..++-
T Consensus        63 vi~~p~-~~v~~~v~e~--~~~g~k~v~~~~--G~--~~~e~~~~a~~~Girv  108 (122)
T 3ff4_A           63 TLYINP-QNQLSEYNYI--LSLKPKRVIFNP--GT--ENEELEEILSENGIEP  108 (122)
T ss_dssp             EECSCH-HHHGGGHHHH--HHHCCSEEEECT--TC--CCHHHHHHHHHTTCEE
T ss_pred             EEEeCH-HHHHHHHHHH--HhcCCCEEEECC--CC--ChHHHHHHHHHcCCeE
Confidence            999994 4555555432  223334666654  32  3578888888877763

>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*

Probab=96.10  E-value=0.016  Score=54.83  Aligned_cols=96  Identities=21%  Similarity=0.224  Sum_probs=68.2

Q ss_pred             cccCceEEEEec---CchhHHHHHHhccC-CCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHH
Q 017490          174 TLLGKTVFILGF---GNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFE  245 (370)
Q Consensus       174 ~l~g~tvGIiGl---G~IG~~vA~~l~~~-G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~e  245 (370)
                      .+.|++|++||=   |++.++++..+..+ |++|....|..-..  +.              ....+.+    ...++++
T Consensus       146 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~--~~--------------~~~~~~g~~~~~~~d~~e  209 (299)
T 1pg5_A          146 TIDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRA--RK--------------EILDELNYPVKEVENPFE  209 (299)
T ss_dssp             CSTTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCC--CH--------------HHHTTCCSCEEEESCGGG
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCchhcC--CH--------------HHHHHcCCeEEEeCCHHH
Confidence            478999999997   59999999999999 99999987642210  00              0011111    2368999


Q ss_pred             HHhcCCEEEEeccCCh------h-h----hcccCHHHHhcCCCCcEEEEcC
Q 017490          246 FASKADVVVCCLSLNK------Q-T----AGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       246 ll~~aDiV~l~lP~t~------~-t----~~li~~~~l~~mk~gailIN~s  285 (370)
                      .++++|+|..-.=-.+      + .    .+-++.+.++.+||+++|.-+.
T Consensus       210 av~~aDvvyt~~~q~er~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~l  260 (299)
T 1pg5_A          210 VINEVDVLYVTRIQKERFVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPL  260 (299)
T ss_dssp             TGGGCSEEEEECCCSTTSSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCS
T ss_pred             HhcCCCEEEeCCcccccccCHHHHHHhhcCcccCHHHHHhcCCCCEEECCC
Confidence            9999999987643221      1 1    3567888999999999988774

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=96.10  E-value=0.0094  Score=56.47  Aligned_cols=68  Identities=13%  Similarity=0.128  Sum_probs=46.6

Q ss_pred             ceEEEEec-CchhHHHHHHhccCCCEE-EEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHH--------
Q 017490          178 KTVFILGF-GNIGVELAKRLRPFGVKI-IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA--------  247 (370)
Q Consensus       178 ~tvGIiGl-G~IG~~vA~~l~~~G~~V-~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell--------  247 (370)
                      .++||||+ |.||+..++.++..+.++ .++|++......               .+.......+.++++++        
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~---------------~~~~~~~~~~~~~~~ll~~~~~l~~   68 (312)
T 3o9z_A            4 TRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVGLV---------------DSFFPEAEFFTEPEAFEAYLEDLRD   68 (312)
T ss_dssp             CEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGG---------------GGTCTTCEEESCHHHHHHHHHHHHH
T ss_pred             eEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHHHH---------------HhhCCCCceeCCHHHHHHHhhhhcc
Confidence            58999999 789999999998888875 467776543100               00000001346788887        


Q ss_pred             --hcCCEEEEeccCC
Q 017490          248 --SKADVVVCCLSLN  260 (370)
Q Consensus       248 --~~aDiV~l~lP~t  260 (370)
                        .+.|+|++++|..
T Consensus        69 ~~~~vD~V~I~tP~~   83 (312)
T 3o9z_A           69 RGEGVDYLSIASPNH   83 (312)
T ss_dssp             TTCCCSEEEECSCGG
T ss_pred             cCCCCcEEEECCCch
Confidence              5789999999953

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=96.08  E-value=0.037  Score=54.83  Aligned_cols=124  Identities=15%  Similarity=0.122  Sum_probs=66.4

Q ss_pred             cccccCceEEEEecCchhHHHHHHhccCCCEEE-EEcCCC----cccccc--ccc--cchhhhccccccccccccCCCCC
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKII-ATKRSW----ASHSQV--SCQ--SSALAVKNGIIDDLVDEKGCHED  242 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~-~~dr~~----~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~  242 (370)
                      +.++.|++|.|.|+|++|+.+|+.|..+|++|+ +.|.+.    .....+  .+.  ...+....+.+.+...  ....+
T Consensus       207 g~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~--a~~i~  284 (421)
T 2yfq_A          207 GIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPG--AERIT  284 (421)
T ss_dssp             TCCGGGSCEEEECCSHHHHHHHHHHHHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC-------------
T ss_pred             CCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCC--ceEeC
Confidence            457899999999999999999999999999998 455541    110000  000  0000000000000000  01112


Q ss_pred             HHHHH-hcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          243 IFEFA-SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       243 l~ell-~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      .++++ ..||+++-|.+     .+.|+.+....+ ...+++-.+.+++-  .+-.+.|++..+.
T Consensus       285 ~~~~~~~~~DIliP~A~-----~n~i~~~~A~~l-~ak~VvEgAN~P~t--~ea~~il~~~GI~  340 (421)
T 2yfq_A          285 DEEFWTKEYDIIVPAAL-----ENVITGERAKTI-NAKLVCEAANGPTT--PEGDKVLTERGIN  340 (421)
T ss_dssp             ----------CEEECSC-----SSCSCHHHHTTC-CCSEEECCSSSCSC--HHHHHHHHHHTCE
T ss_pred             ccchhcCCccEEEEcCC-----cCcCCcccHHHc-CCeEEEeCCccccC--HHHHHHHHHCCCE
Confidence            23333 37999887743     456888887777 46778888888864  3344666666665

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=96.07  E-value=0.0031  Score=62.70  Aligned_cols=66  Identities=17%  Similarity=0.144  Sum_probs=46.6

Q ss_pred             ceEEEEecCchhH-HHHHHhccC-CCEE-EEEcCCCccccccccccchhhhccccccccccccC-------CCCCHHHHH
Q 017490          178 KTVFILGFGNIGV-ELAKRLRPF-GVKI-IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-------CHEDIFEFA  247 (370)
Q Consensus       178 ~tvGIiGlG~IG~-~vA~~l~~~-G~~V-~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~ell  247 (370)
                      .+|||||+|.||+ .+++.+... +++| .++|++.....                 .....++       .+.++++++
T Consensus        84 irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~-----------------~~a~~~g~~~~~~~~~~~~~~ll  146 (433)
T 1h6d_A           84 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAK-----------------IVAAEYGVDPRKIYDYSNFDKIA  146 (433)
T ss_dssp             EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHH-----------------HHHHHTTCCGGGEECSSSGGGGG
T ss_pred             eEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHH-----------------HHHHHhCCCcccccccCCHHHHh
Confidence            5899999999997 899988765 6775 57787654311                 0111111       256888988


Q ss_pred             h--cCCEEEEeccCC
Q 017490          248 S--KADVVVCCLSLN  260 (370)
Q Consensus       248 ~--~aDiV~l~lP~t  260 (370)
                      .  +.|+|++++|..
T Consensus       147 ~~~~vD~V~iatp~~  161 (433)
T 1h6d_A          147 KDPKIDAVYIILPNS  161 (433)
T ss_dssp             GCTTCCEEEECSCGG
T ss_pred             cCCCCCEEEEcCCch
Confidence            7  799999999854

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=96.07  E-value=0.012  Score=56.83  Aligned_cols=97  Identities=16%  Similarity=0.252  Sum_probs=60.3

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHh-----c
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----K  249 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~  249 (370)
                      .|.+|.|+|.|.||...++.++.+|+ +|++.+++..+.......        + ++..++......++.+.+.     .
T Consensus       191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l--------G-a~~vi~~~~~~~~~~~~~~~~~~~g  261 (374)
T 2jhf_A          191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV--------G-ATECVNPQDYKKPIQEVLTEMSNGG  261 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT--------T-CSEEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh--------C-CceEecccccchhHHHHHHHHhCCC
Confidence            58899999999999999999999999 899999875542110000        0 0000000000123444332     4


Q ss_pred             CCEEEEeccCChhhhcccCHHHHhcCCCC-cEEEEcCC
Q 017490          250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKG-SLLVNIAR  286 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~li~~~~l~~mk~g-ailIN~sR  286 (370)
                      .|+|+-++...+..     ...++.++++ ..++.++-
T Consensus       262 ~D~vid~~g~~~~~-----~~~~~~l~~~~G~iv~~G~  294 (374)
T 2jhf_A          262 VDFSFEVIGRLDTM-----VTALSCCQEAYGVSVIVGV  294 (374)
T ss_dssp             BSEEEECSCCHHHH-----HHHHHHBCTTTCEEEECSC
T ss_pred             CcEEEECCCCHHHH-----HHHHHHhhcCCcEEEEecc
Confidence            79998887642221     3566778888 88888764

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=96.04  E-value=0.0049  Score=55.47  Aligned_cols=68  Identities=9%  Similarity=0.035  Sum_probs=44.4

Q ss_pred             CceEEEEecCchhHHHHHH--hccCCCEEE-EEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHh-cCCE
Q 017490          177 GKTVFILGFGNIGVELAKR--LRPFGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-KADV  252 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~--l~~~G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aDi  252 (370)
                      .++|+|||+|.+|+.+++.  ... |+++. ++|.++......              .....-. ...+++++++ +.|+
T Consensus        80 ~~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~--------------i~gv~V~-~~~dl~ell~~~ID~  143 (211)
T 2dt5_A           80 KWGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGRP--------------VRGGVIE-HVDLLPQRVPGRIEI  143 (211)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCE--------------ETTEEEE-EGGGHHHHSTTTCCE
T ss_pred             CCEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhh--------------hcCCeee-cHHhHHHHHHcCCCE
Confidence            3589999999999999995  335 88865 567665432100              0001101 2457888876 5899


Q ss_pred             EEEeccCC
Q 017490          253 VVCCLSLN  260 (370)
Q Consensus       253 V~l~lP~t  260 (370)
                      |++|+|..
T Consensus       144 ViIA~Ps~  151 (211)
T 2dt5_A          144 ALLTVPRE  151 (211)
T ss_dssp             EEECSCHH
T ss_pred             EEEeCCch
Confidence            99999853

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=96.03  E-value=0.051  Score=53.77  Aligned_cols=120  Identities=19%  Similarity=0.227  Sum_probs=72.4

Q ss_pred             cccccCceEEEEecCchhHHHHHHhccCCCEEE-EEcCCCccccccccccchhhhccccccccccccCC----CCCHHHH
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC----HEDIFEF  246 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~el  246 (370)
                      +.+++|++|.|.|+|++|+.+|+.|...|++|+ +.|.+..-.  ..+   .+...  .+.+...+.+.    ..+-+++
T Consensus       213 g~~l~gk~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~i~--dp~---Gld~~--~l~~~~~~~g~v~~~~~~~~e~  285 (419)
T 3aoe_E          213 GLDLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMY--APE---GLDVA--EVLSAYEATGSLPRLDLAPEEV  285 (419)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEE--CTT---CCCHH--HHHHHHHHHSSCSCCCBCTTTG
T ss_pred             CCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCeEE--CCC---CCCHH--HHHHHHHhhCCcceeeccchhh
Confidence            457899999999999999999999999999998 555421100  000   00000  00000001010    0011233


Q ss_pred             H-hcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceE
Q 017490          247 A-SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGG  306 (370)
Q Consensus       247 l-~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~g  306 (370)
                      + ..||+++-|-     +.+.|+.+....++ =.+++.-+.+++-  .+-.+.|.+..+..
T Consensus       286 ~~~~~DVliP~A-----~~n~i~~~~A~~l~-ak~V~EgAN~p~t--~~A~~~L~~~Gi~~  338 (419)
T 3aoe_E          286 FGLEAEVLVLAA-----REGALDGDRARQVQ-AQAVVEVANFGLN--PEAEAYLLGKGALV  338 (419)
T ss_dssp             GGSSCSEEEECS-----CTTCBCHHHHTTCC-CSEEEECSTTCBC--HHHHHHHHHHTCEE
T ss_pred             hccCceEEEecc-----cccccccchHhhCC-ceEEEECCCCcCC--HHHHHHHHHCCCEE
Confidence            3 3899998874     34567877777775 3588888988863  34456677777763

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=96.02  E-value=0.002  Score=62.25  Aligned_cols=96  Identities=16%  Similarity=0.278  Sum_probs=62.0

Q ss_pred             cccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCC---ccccccccccchhhhccccccccccccCCCCCHHHHH---
Q 017490          174 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW---ASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA---  247 (370)
Q Consensus       174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---  247 (370)
                      .+.|++|.|+|.|.||..+++.++.+|++|++.+++.   .+......    +    +  .+..+  ..  ++.+.+   
T Consensus       178 ~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~----~----g--a~~v~--~~--~~~~~~~~~  243 (366)
T 2cdc_A          178 TLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEE----T----K--TNYYN--SS--NGYDKLKDS  243 (366)
T ss_dssp             SSTTCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHH----H----T--CEEEE--CT--TCSHHHHHH
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHH----h----C--Cceec--hH--HHHHHHHHh
Confidence            4669999999999999999999999999999999875   33110000    0    0  00010  00  111111   


Q ss_pred             -hcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCC
Q 017490          248 -SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       248 -~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg  287 (370)
                       ...|+|+.++......   + ...++.|+++..+|+++-.
T Consensus       244 ~~~~d~vid~~g~~~~~---~-~~~~~~l~~~G~iv~~g~~  280 (366)
T 2cdc_A          244 VGKFDVIIDATGADVNI---L-GNVIPLLGRNGVLGLFGFS  280 (366)
T ss_dssp             HCCEEEEEECCCCCTHH---H-HHHGGGEEEEEEEEECSCC
T ss_pred             CCCCCEEEECCCChHHH---H-HHHHHHHhcCCEEEEEecC
Confidence             3579999888753322   0 3556778888899988753

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=96.01  E-value=0.005  Score=58.76  Aligned_cols=96  Identities=21%  Similarity=0.268  Sum_probs=61.5

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHH----hcCC
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA----SKAD  251 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell----~~aD  251 (370)
                      .|++|.|+|.|.||...++.++.+|++|++.+++..+......    +    + .+..++ . ...++.+.+    ...|
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----l----G-a~~~~d-~-~~~~~~~~~~~~~~~~d  232 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE----L----G-ADLVVN-P-LKEDAAKFMKEKVGGVH  232 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----T----T-CSEEEC-T-TTSCHHHHHHHHHSSEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----C----C-CCEEec-C-CCccHHHHHHHHhCCCC
Confidence            4789999999999999999999999999999987543211000    0    0 000000 0 112333322    3579


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCC
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg  287 (370)
                      +|+.++...+..     ...++.|+++..++.++..
T Consensus       233 ~vid~~g~~~~~-----~~~~~~l~~~G~~v~~g~~  263 (339)
T 1rjw_A          233 AAVVTAVSKPAF-----QSAYNSIRRGGACVLVGLP  263 (339)
T ss_dssp             EEEESSCCHHHH-----HHHHHHEEEEEEEEECCCC
T ss_pred             EEEECCCCHHHH-----HHHHHHhhcCCEEEEeccc
Confidence            999887642221     3566778899899988754

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=96.00  E-value=0.006  Score=56.18  Aligned_cols=37  Identities=32%  Similarity=0.541  Sum_probs=33.3

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      ++++|.|.|.|.||+.+++.|...|++|++++|+...
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~   38 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQP   38 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            4678999999999999999999999999999987543

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=95.98  E-value=0.0057  Score=61.73  Aligned_cols=126  Identities=10%  Similarity=0.034  Sum_probs=71.3

Q ss_pred             CceEEEEecCch--hHHHHHHhc---cC-CCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490          177 GKTVFILGFGNI--GVELAKRLR---PF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  250 (370)
Q Consensus       177 g~tvGIiGlG~I--G~~vA~~l~---~~-G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  250 (370)
                      .++|+|||.|.+  |.++|..+.   ++ |.+|..||+..............+....    ..-.......++++.++.|
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~----~~~~~I~~ttD~~eal~dA   78 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEV----GADLKFEKTMNLDDVIIDA   78 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHT----TCCCEEEEESCHHHHHTTC
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccC----CCCcEEEEECCHHHHhCCC
Confidence            468999999997  465566553   33 8899999997643111000000000000    0000011235788889999


Q ss_pred             CEEEEeccCC-----------hhhhcccC----------------------------HHHHhcCCCCcEEEEcCCCcccC
Q 017490          251 DVVVCCLSLN-----------KQTAGIVN----------------------------KSFLSSMKKGSLLVNIARGGLLD  291 (370)
Q Consensus       251 DiV~l~lP~t-----------~~t~~li~----------------------------~~~l~~mk~gailIN~sRg~~vd  291 (370)
                      |+|++++|..           +...+++.                            .+.+....|++++||++..--+-
T Consensus        79 D~VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~  158 (480)
T 1obb_A           79 DFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEG  158 (480)
T ss_dssp             SEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHHH
T ss_pred             CEEEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHH
Confidence            9999999741           11111111                            02344457999999998876555


Q ss_pred             HHHHHHHHHhCCceEE
Q 017490          292 YEAIAHYLECGHLGGL  307 (370)
Q Consensus       292 ~~aL~~aL~~g~i~ga  307 (370)
                      +.++.+ +...++.|.
T Consensus       159 t~~~~k-~p~~rviG~  173 (480)
T 1obb_A          159 TTLVTR-TVPIKAVGF  173 (480)
T ss_dssp             HHHHHH-HSCSEEEEE
T ss_pred             HHHHHH-CCCCcEEec
Confidence            566655 444555554

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=95.98  E-value=0.015  Score=56.19  Aligned_cols=97  Identities=15%  Similarity=0.262  Sum_probs=60.6

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHh-----c
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----K  249 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~  249 (370)
                      .|.+|.|+|.|.||...++.++.+|+ +|++.+++..+.......        + ++..++......++.+.+.     .
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l--------G-a~~vi~~~~~~~~~~~~v~~~~~~g  265 (376)
T 1e3i_A          195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL--------G-ATDCLNPRELDKPVQDVITELTAGG  265 (376)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT--------T-CSEEECGGGCSSCHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh--------C-CcEEEccccccchHHHHHHHHhCCC
Confidence            58899999999999999999999999 899999876542110000        0 0000000000123433332     4


Q ss_pred             CCEEEEeccCChhhhcccCHHHHhcCCCC-cEEEEcCC
Q 017490          250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKG-SLLVNIAR  286 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~li~~~~l~~mk~g-ailIN~sR  286 (370)
                      .|+|+-++...+.    + ...++.++++ ..++.++-
T Consensus       266 ~Dvvid~~G~~~~----~-~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          266 VDYSLDCAGTAQT----L-KAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             BSEEEESSCCHHH----H-HHHHHTBCTTTCEEEECCC
T ss_pred             ccEEEECCCCHHH----H-HHHHHHhhcCCCEEEEECC
Confidence            7999888763221    1 3567788888 88888764

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=95.97  E-value=0.011  Score=56.08  Aligned_cols=68  Identities=15%  Similarity=0.121  Sum_probs=46.3

Q ss_pred             ceEEEEec-CchhHHHHHHhccCCCEE-EEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHH--------
Q 017490          178 KTVFILGF-GNIGVELAKRLRPFGVKI-IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA--------  247 (370)
Q Consensus       178 ~tvGIiGl-G~IG~~vA~~l~~~G~~V-~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell--------  247 (370)
                      .++||||+ |.||+..++.++..|.++ .++|++.......               ........+.++++++        
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~---------------~~~~~~~~~~~~~~ll~~~~~l~~   68 (318)
T 3oa2_A            4 KNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVGIID---------------SISPQSEFFTEFEFFLDHASNLKR   68 (318)
T ss_dssp             CEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGG---------------GTCTTCEEESSHHHHHHHHHHHTT
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHH---------------hhCCCCcEECCHHHHHHhhhhhhh
Confidence            58999999 789999999998888875 4677765431000               0000001246788877        


Q ss_pred             ---hcCCEEEEeccCC
Q 017490          248 ---SKADVVVCCLSLN  260 (370)
Q Consensus       248 ---~~aDiV~l~lP~t  260 (370)
                         .+.|+|++++|..
T Consensus        69 ~~~~~vD~V~I~tP~~   84 (318)
T 3oa2_A           69 DSATALDYVSICSPNY   84 (318)
T ss_dssp             STTTSCCEEEECSCGG
T ss_pred             ccCCCCcEEEECCCcH
Confidence               5789999999953

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=95.96  E-value=0.012  Score=56.77  Aligned_cols=97  Identities=18%  Similarity=0.284  Sum_probs=61.2

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHh-----c
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----K  249 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~  249 (370)
                      .|.+|.|+|.|.||...++.++.+|+ +|++.+++..+.......        + ++..++......++.+.+.     .
T Consensus       190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~l--------G-a~~vi~~~~~~~~~~~~v~~~~~~g  260 (373)
T 2fzw_A          190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF--------G-ATECINPQDFSKPIQEVLIEMTDGG  260 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH--------T-CSEEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc--------C-CceEeccccccccHHHHHHHHhCCC
Confidence            58899999999999999999999999 899999875542110000        0 0000000000123444332     4


Q ss_pred             CCEEEEeccCChhhhcccCHHHHhcCCCC-cEEEEcCC
Q 017490          250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKG-SLLVNIAR  286 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~li~~~~l~~mk~g-ailIN~sR  286 (370)
                      .|+|+-++...+.     -...++.++++ ..++.++-
T Consensus       261 ~D~vid~~g~~~~-----~~~~~~~l~~~~G~iv~~G~  293 (373)
T 2fzw_A          261 VDYSFECIGNVKV-----MRAALEACHKGWGVSVVVGV  293 (373)
T ss_dssp             BSEEEECSCCHHH-----HHHHHHTBCTTTCEEEECSC
T ss_pred             CCEEEECCCcHHH-----HHHHHHhhccCCcEEEEEec
Confidence            7999988764222     13567788998 88888864

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=95.93  E-value=0.0047  Score=59.65  Aligned_cols=66  Identities=15%  Similarity=0.102  Sum_probs=45.4

Q ss_pred             ceEEEEecCchhHH-HHHHhccC-CCEEE-EEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhc--CCE
Q 017490          178 KTVFILGFGNIGVE-LAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK--ADV  252 (370)
Q Consensus       178 ~tvGIiGlG~IG~~-vA~~l~~~-G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDi  252 (370)
                      .+|||||+|.||+. .++.++.. +++|. ++|++..+..                 +.......+.+++++++.  .|+
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~-----------------~~~~~~~~~~~~~~ll~~~~vD~   68 (362)
T 3fhl_A            6 IKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSK-----------------ERYPQASIVRSFKELTEDPEIDL   68 (362)
T ss_dssp             EEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGG-----------------TTCTTSEEESCSHHHHTCTTCCE
T ss_pred             eEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH-----------------HhCCCCceECCHHHHhcCCCCCE
Confidence            58999999999997 67776654 78875 6777643310                 000000134789999976  899


Q ss_pred             EEEeccCC
Q 017490          253 VVCCLSLN  260 (370)
Q Consensus       253 V~l~lP~t  260 (370)
                      |++|+|..
T Consensus        69 V~i~tp~~   76 (362)
T 3fhl_A           69 IVVNTPDN   76 (362)
T ss_dssp             EEECSCGG
T ss_pred             EEEeCChH
Confidence            99999953

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=95.93  E-value=0.013  Score=56.50  Aligned_cols=97  Identities=20%  Similarity=0.277  Sum_probs=61.0

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHh-----c
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----K  249 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~  249 (370)
                      .|.+|.|+|.|.||...++.++.+|+ +|++.+++..+.......        + ++..++......++.+.+.     .
T Consensus       191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l--------G-a~~vi~~~~~~~~~~~~i~~~t~gg  261 (373)
T 1p0f_A          191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL--------G-ATECLNPKDYDKPIYEVICEKTNGG  261 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT--------T-CSEEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc--------C-CcEEEecccccchHHHHHHHHhCCC
Confidence            58899999999999999999999999 899999875542110000        0 0000000000123444332     4


Q ss_pred             CCEEEEeccCChhhhcccCHHHHhcCCCC-cEEEEcCC
Q 017490          250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKG-SLLVNIAR  286 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~li~~~~l~~mk~g-ailIN~sR  286 (370)
                      .|+|+-++...+.     -...++.++++ ..++.++-
T Consensus       262 ~Dvvid~~g~~~~-----~~~~~~~l~~~~G~iv~~G~  294 (373)
T 1p0f_A          262 VDYAVECAGRIET-----MMNALQSTYCGSGVTVVLGL  294 (373)
T ss_dssp             BSEEEECSCCHHH-----HHHHHHTBCTTTCEEEECCC
T ss_pred             CCEEEECCCCHHH-----HHHHHHHHhcCCCEEEEEcc
Confidence            7999988764222     13567788998 88888864

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=95.92  E-value=0.0052  Score=58.33  Aligned_cols=102  Identities=16%  Similarity=0.194  Sum_probs=58.2

Q ss_pred             ceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhcccccccccc-ccCCCCCHHHHHhcCCEEEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVVC  255 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~l  255 (370)
                      ++|+|||.|.+|..+|..+...|. +|..+|.+..+.....   .++.  +........ ......+. +.++.||+|++
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~---~dl~--~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~   76 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKA---LDLY--EASPIEGFDVRVTGTNNY-ADTANSDVIVV   76 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHH---HHHH--TTHHHHTCCCCEEEESCG-GGGTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHH---HhHH--HhHhhcCCCeEEEECCCH-HHHCCCCEEEE
Confidence            589999999999999999988886 8999998754321000   0000  000000000 00011455 67899999999


Q ss_pred             eccCChhhhcc-----c--C----H---HHHhcCCCCcEEEEcCC
Q 017490          256 CLSLNKQTAGI-----V--N----K---SFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       256 ~lP~t~~t~~l-----i--~----~---~~l~~mk~gailIN~sR  286 (370)
                      +.+.. ...+.     +  |    .   +.+....|++++++.+.
T Consensus        77 a~g~p-~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tN  120 (309)
T 1ur5_A           77 TSGAP-RKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN  120 (309)
T ss_dssp             CCCC---------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCS
T ss_pred             cCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCC
Confidence            98532 22111     0  1    1   12333458999999855

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=95.92  E-value=0.017  Score=54.33  Aligned_cols=105  Identities=17%  Similarity=0.157  Sum_probs=66.9

Q ss_pred             CceEEEEec-CchhHHHHHHhccCCCEEE-EEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHh--cCCE
Q 017490          177 GKTVFILGF-GNIGVELAKRLRPFGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADV  252 (370)
Q Consensus       177 g~tvGIiGl-G~IG~~vA~~l~~~G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDi  252 (370)
                      .++|+|+|+ |++|+.+++.++..|++++ .+++......                .....   .+.+++++..  ..|+
T Consensus         7 ~~~VaVvGasG~~G~~~~~~l~~~g~~~v~~VnP~~~g~~----------------i~G~~---vy~sl~el~~~~~~Dv   67 (288)
T 1oi7_A            7 ETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGME----------------VLGVP---VYDTVKEAVAHHEVDA   67 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCE----------------ETTEE---EESSHHHHHHHSCCSE
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHcCCeEEEEECCCCCCce----------------ECCEE---eeCCHHHHhhcCCCCE
Confidence            468999998 9999999999988899854 6665431100                00011   3467899888  8999


Q ss_pred             EEEeccCChhhhcccCHHHHhcCCCCcE-EEEcCCCc-ccCHHHHHHHHHhCCce
Q 017490          253 VVCCLSLNKQTAGIVNKSFLSSMKKGSL-LVNIARGG-LLDYEAIAHYLECGHLG  305 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~~l~~mk~gai-lIN~sRg~-~vd~~aL~~aL~~g~i~  305 (370)
                      +++++|. +.+...+.+ ..+   .|.- +|..+.|= .-+++.|.++.++..+.
T Consensus        68 ~Ii~vp~-~~~~~~~~e-a~~---~Gi~~vVi~t~G~~~~~~~~l~~~a~~~gi~  117 (288)
T 1oi7_A           68 SIIFVPA-PAAADAALE-AAH---AGIPLIVLITEGIPTLDMVRAVEEIKALGSR  117 (288)
T ss_dssp             EEECCCH-HHHHHHHHH-HHH---TTCSEEEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred             EEEecCH-HHHHHHHHH-HHH---CCCCEEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            9999984 334444332 222   2322 45555552 23456788888877664

>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=95.92  E-value=0.031  Score=52.97  Aligned_cols=103  Identities=17%  Similarity=0.061  Sum_probs=72.5

Q ss_pred             cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccc--cCCCCCHHHHHhcC
Q 017490          174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE--KGCHEDIFEFASKA  250 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~ell~~a  250 (370)
                      .+.|.+|+++|= +++.++++..+..+|++|....|..-..  +.              +....  .....++++.++++
T Consensus       151 ~l~gl~ia~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~--~~--------------~~~~~~~~~~~~d~~eav~~a  214 (301)
T 2ef0_A          151 GLAGLEVAWVGDGNNVLNSLLEVAPLAGLKVRVATPKGYEP--DP--------------GLLKRANAFFTHDPKEAALGA  214 (301)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCC--CH--------------HHHHHHTCEEESCHHHHHTTC
T ss_pred             CcCCcEEEEECCCchhHHHHHHHHHHcCCEEEEECCchhcC--CH--------------HHHhhceeEEECCHHHHhcCC
Confidence            478999999996 8999999999999999999987643221  00              01110  11246899999999


Q ss_pred             CEEEEeccC-------Chh-----hhcccCHHHHhcCCCCcEEEEcC---CCcccCH
Q 017490          251 DVVVCCLSL-------NKQ-----TAGIVNKSFLSSMKKGSLLVNIA---RGGLLDY  292 (370)
Q Consensus       251 DiV~l~lP~-------t~~-----t~~li~~~~l~~mk~gailIN~s---Rg~~vd~  292 (370)
                      |+|..-.=.       ..+     ..+-++.+.++.+||+++|.-+.   ||.=|+.
T Consensus       215 Dvvy~~~~~smg~~~~~~~~~~~~~~y~v~~e~l~~a~~~ai~mHplP~~Rg~EI~~  271 (301)
T 2ef0_A          215 HALYTDVWTSMGQEAEREKRLRDFQGFQVNGELLKLLRPEGVFLHCLPAHYGEETTE  271 (301)
T ss_dssp             SEEEECCCC--------CHHHHHTTTCCBCHHHHTTSCTTCEEEECSCCCBTTTBCH
T ss_pred             CEEEecCcccCCcccchhHHHHHhhccccCHHHHHhcCCCcEEECCCCCCCCCccCH
Confidence            999884320       011     23567899999999999999886   5654444

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=95.89  E-value=0.0053  Score=58.00  Aligned_cols=46  Identities=26%  Similarity=0.408  Sum_probs=34.4

Q ss_pred             cccCC-CCcccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCC
Q 017490          165 KKLGV-PTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  210 (370)
Q Consensus       165 ~~~~~-~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~  210 (370)
                      ..|+. .....|++++|.|||+|.+|.++|+.|...|. ++..+|...
T Consensus        23 ~~~G~~~~q~kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           23 KRMGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             ---------CGGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             cccChHHHHHHHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            45664 34567999999999999999999999998887 789998764

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=95.89  E-value=0.015  Score=55.58  Aligned_cols=97  Identities=22%  Similarity=0.266  Sum_probs=61.3

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCC-CCCHHH---HHh---
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC-HEDIFE---FAS---  248 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~e---ll~---  248 (370)
                      .|.+|.|+|.|.+|...++.++.+|++|++.+++..+.......        + ++.... ... ....++   ...   
T Consensus       168 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l--------G-a~~~~~-~~~~~~~~~~i~~~~~~~~  237 (352)
T 1e3j_A          168 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNC--------G-ADVTLV-VDPAKEEESSIIERIRSAI  237 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT--------T-CSEEEE-CCTTTSCHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh--------C-CCEEEc-CcccccHHHHHHHHhcccc
Confidence            57899999999999999999999999999998765431110000        0 000000 000 111222   222   


Q ss_pred             --cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCC
Q 017490          249 --KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       249 --~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg  287 (370)
                        ..|+|+.++......     ...++.++++..++.++.+
T Consensus       238 g~g~D~vid~~g~~~~~-----~~~~~~l~~~G~iv~~G~~  273 (352)
T 1e3j_A          238 GDLPNVTIDCSGNEKCI-----TIGINITRTGGTLMLVGMG  273 (352)
T ss_dssp             SSCCSEEEECSCCHHHH-----HHHHHHSCTTCEEEECSCC
T ss_pred             CCCCCEEEECCCCHHHH-----HHHHHHHhcCCEEEEEecC
Confidence              489999987643221     3567789999999998753

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=95.88  E-value=0.0042  Score=59.50  Aligned_cols=93  Identities=18%  Similarity=0.135  Sum_probs=58.9

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHh----
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS----  248 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~----  248 (370)
                      .|++|.|+|.|.||...++.++.+|+ +|++.+++..+......    +         .++...  ...++.+.+.    
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~----~---------Ga~~~~~~~~~~~~~~v~~~~~  233 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKK----V---------GADYVINPFEEDVVKEVMDITD  233 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHH----H---------TCSEEECTTTSCHHHHHHHHTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----h---------CCCEEECCCCcCHHHHHHHHcC
Confidence            78999999999999999999999999 99999987543110000    0         000000  1123333222    


Q ss_pred             --cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          249 --KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       249 --~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                        ..|+|+.++...+..     ...++.++++..++.++.
T Consensus       234 g~g~D~vid~~g~~~~~-----~~~~~~l~~~G~iv~~g~  268 (348)
T 2d8a_A          234 GNGVDVFLEFSGAPKAL-----EQGLQAVTPAGRVSLLGL  268 (348)
T ss_dssp             TSCEEEEEECSCCHHHH-----HHHHHHEEEEEEEEECCC
T ss_pred             CCCCCEEEECCCCHHHH-----HHHHHHHhcCCEEEEEcc
Confidence              478888887632221     345666788888887764

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=95.86  E-value=0.0045  Score=59.70  Aligned_cols=66  Identities=15%  Similarity=0.121  Sum_probs=45.5

Q ss_pred             ceEEEEecCchhHH-HHHHhccC-CCEEE-EEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHh--cCCE
Q 017490          178 KTVFILGFGNIGVE-LAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADV  252 (370)
Q Consensus       178 ~tvGIiGlG~IG~~-vA~~l~~~-G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDi  252 (370)
                      .+|||||+|.||+. .++.++.. +++|. ++|++..+.  .               ........+.++++++.  +.|+
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~--~---------------~~~~~~~~~~~~~~ll~~~~vD~   68 (358)
T 3gdo_A            6 IKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEV--K---------------RDFPDAEVVHELEEITNDPAIEL   68 (358)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHH--H---------------HHCTTSEEESSTHHHHTCTTCCE
T ss_pred             ceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHH--H---------------hhCCCCceECCHHHHhcCCCCCE
Confidence            58999999999997 67777665 78875 567664320  0               00000013478999997  7899


Q ss_pred             EEEeccCC
Q 017490          253 VVCCLSLN  260 (370)
Q Consensus       253 V~l~lP~t  260 (370)
                      |++|+|..
T Consensus        69 V~i~tp~~   76 (358)
T 3gdo_A           69 VIVTTPSG   76 (358)
T ss_dssp             EEECSCTT
T ss_pred             EEEcCCcH
Confidence            99999964

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=95.85  E-value=0.013  Score=56.72  Aligned_cols=97  Identities=22%  Similarity=0.328  Sum_probs=60.2

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHh-----c
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----K  249 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~  249 (370)
                      .|.+|.|+|.|.||...++.++.+|+ +|++.+++..+.......        + ++..++......++.+.+.     .
T Consensus       193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~l--------G-a~~vi~~~~~~~~~~~~i~~~~~gg  263 (378)
T 3uko_A          193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKF--------G-VNEFVNPKDHDKPIQEVIVDLTDGG  263 (378)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTT--------T-CCEEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc--------C-CcEEEccccCchhHHHHHHHhcCCC
Confidence            58899999999999999999999999 899999876542111000        0 0000000000133444332     3


Q ss_pred             CCEEEEeccCChhhhcccCHHHHhcCCCC-cEEEEcCC
Q 017490          250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKG-SLLVNIAR  286 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~li~~~~l~~mk~g-ailIN~sR  286 (370)
                      .|+|+-++...+.     -...++.+++| ..++.++-
T Consensus       264 ~D~vid~~g~~~~-----~~~~~~~l~~g~G~iv~~G~  296 (378)
T 3uko_A          264 VDYSFECIGNVSV-----MRAALECCHKGWGTSVIVGV  296 (378)
T ss_dssp             BSEEEECSCCHHH-----HHHHHHTBCTTTCEEEECSC
T ss_pred             CCEEEECCCCHHH-----HHHHHHHhhccCCEEEEEcc
Confidence            7999888764222     13566778886 88887764

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=95.84  E-value=0.08  Score=52.30  Aligned_cols=124  Identities=19%  Similarity=0.166  Sum_probs=72.5

Q ss_pred             cccccCceEEEEecCchhHHHHHHhcc-CCCEEE-EEcCCCccccc---cccccchhhhccccccccccccCCCCCHHHH
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLRP-FGVKII-ATKRSWASHSQ---VSCQSSALAVKNGIIDDLVDEKGCHEDIFEF  246 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~-~G~~V~-~~dr~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  246 (370)
                      +.++.|++|.|.|+|++|+.+|+.|.. .|.+|+ +.|.+..-..+   ..+....+....+.+.+...  ....+.+++
T Consensus       204 g~~l~g~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~--a~~~~~~ei  281 (415)
T 2tmg_A          204 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPK--GERITNEEL  281 (415)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSS--SEEECHHHH
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCC--ceEcCchhh
Confidence            457999999999999999999999998 999998 44442110000   00000000000000000000  011234565


Q ss_pred             Hh-cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          247 AS-KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       247 l~-~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      +. .||+++-|..     .+.|+.+....++ ..+++-.+.+++ ..+ -.+.|.+..+.
T Consensus       282 l~~~~DIliP~A~-----~n~i~~~~a~~l~-ak~V~EgAN~p~-t~~-a~~~l~~~Gi~  333 (415)
T 2tmg_A          282 LELDVDILVPAAL-----EGAIHAGNAERIK-AKAVVEGANGPT-TPE-ADEILSRRGIL  333 (415)
T ss_dssp             TTCSCSEEEECSS-----TTSBCHHHHTTCC-CSEEECCSSSCB-CHH-HHHHHHHTTCE
T ss_pred             hcCCCcEEEecCC-----cCccCcccHHHcC-CeEEEeCCCccc-CHH-HHHHHHHCCCE
Confidence            54 8999988854     3467777777773 557777777876 333 44567777665

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=95.84  E-value=0.0071  Score=57.17  Aligned_cols=109  Identities=15%  Similarity=0.074  Sum_probs=63.8

Q ss_pred             ceEEEEecCchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  255 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  255 (370)
                      ++|+|||.|.+|..+|..+...|.  +|..+|+....... ...  ++........ .........+ .+.++.||+|++
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g-~~~--dl~~~~~~~~-~~~~i~~t~d-~~a~~~aDiVVi   75 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVG-EAM--DLAHAAAGID-KYPKIVGGAD-YSLLKGSEIIVV   75 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHH-HHH--HHHHHHHTTT-CCCEEEEESC-GGGGTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHH-HHH--HHHhhhhhcC-CCCEEEEeCC-HHHhCCCCEEEE
Confidence            379999999999999999987777  99999987643110 000  0000000000 0000001234 778999999999


Q ss_pred             eccCC--h-hhh-ccc--CH-------HHHhcCCCCcEEEEcCCCcccCHH
Q 017490          256 CLSLN--K-QTA-GIV--NK-------SFLSSMKKGSLLVNIARGGLLDYE  293 (370)
Q Consensus       256 ~lP~t--~-~t~-~li--~~-------~~l~~mk~gailIN~sRg~~vd~~  293 (370)
                      +.+..  + .++ .++  |.       +.+....|++++++++  .++|.-
T Consensus        76 aag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvs--NPvd~~  124 (294)
T 1oju_A           76 TAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT--NPMDVM  124 (294)
T ss_dssp             CCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS--SSHHHH
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC--CcchHH
Confidence            97532  1 111 122  21       2355568999999998  455543

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=95.82  E-value=0.0046  Score=58.95  Aligned_cols=124  Identities=16%  Similarity=0.150  Sum_probs=68.7

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhccccccccc-cccCCCCCHHHHHhcCCE
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLV-DEKGCHEDIFEFASKADV  252 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~~aDi  252 (370)
                      ...+|+|||.|.+|.++|..+...|.  +|..+|....+.... .  .++.  +.  .... .......+..+.++.||+
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~-~--~dl~--~~--~~~~~~~~~v~~~~~~a~~~aDv   77 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGD-V--MDLK--HA--TPYSPTTVRVKAGEYSDCHDADL   77 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHH-H--HHHH--HH--GGGSSSCCEEEECCGGGGTTCSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhh-h--hhHH--hh--hhhcCCCeEEEeCCHHHhCCCCE
Confidence            34689999999999999999876664  899999864321100 0  0000  00  0000 000000134567899999


Q ss_pred             EEEeccCChhhhcc-----c--CH-------HHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHhCCceEE
Q 017490          253 VVCCLSLNKQTAGI-----V--NK-------SFLSSMKKGSLLVNIARGGLLDYEAIAHY--LECGHLGGL  307 (370)
Q Consensus       253 V~l~lP~t~~t~~l-----i--~~-------~~l~~mk~gailIN~sRg~~vd~~aL~~a--L~~g~i~ga  307 (370)
                      |+++.+... ..+.     +  |.       +.+....|++++|+++..-=+....+.+.  +...++.|.
T Consensus        78 Vvi~ag~~~-~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~k~~~~p~~rviG~  147 (317)
T 3d0o_A           78 VVICAGAAQ-KPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVDILAYATWKFSGLPKERVIGS  147 (317)
T ss_dssp             EEECCCCCC-CTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             EEECCCCCC-CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHHHHHHhCCCHHHEEec
Confidence            999987432 1111     1  11       22334479999999864332333334333  333356655

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=95.82  E-value=0.0085  Score=52.92  Aligned_cols=71  Identities=21%  Similarity=0.260  Sum_probs=48.3

Q ss_pred             eEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCC-CCCHHHHHhcCCEEEE
Q 017490          179 TVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGC-HEDIFEFASKADVVVC  255 (370)
Q Consensus       179 tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~l~ell~~aDiV~l  255 (370)
                      +|.|.| .|.||+.+++.|...|++|++.+|+..+......            ..... .... .+++.++++.+|+|+.
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~------------~~~~~~D~~d~~~~~~~~~~~~d~vi~   69 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQYNN------------VKAVHFDVDWTPEEMAKQLHGMDAIIN   69 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCCTT------------EEEEECCTTSCHHHHHTTTTTCSEEEE
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhcCC------------ceEEEecccCCHHHHHHHHcCCCEEEE
Confidence            688999 7999999999999999999999998654211000            00000 0011 2346667889999998


Q ss_pred             eccCCh
Q 017490          256 CLSLNK  261 (370)
Q Consensus       256 ~lP~t~  261 (370)
                      +.....
T Consensus        70 ~ag~~~   75 (219)
T 3dqp_A           70 VSGSGG   75 (219)
T ss_dssp             CCCCTT
T ss_pred             CCcCCC
Confidence            877543

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=95.81  E-value=0.0045  Score=59.65  Aligned_cols=98  Identities=26%  Similarity=0.259  Sum_probs=61.5

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCC-CHHHHH-hcCCEE
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHE-DIFEFA-SKADVV  253 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~ell-~~aDiV  253 (370)
                      .|.+|.|+|.|.||...++.++.+|++|++++++..+.......        + .+..++ . ... ++.+.+ ...|+|
T Consensus       179 ~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~l--------G-a~~v~~-~-~~~~~~~~~~~~~~D~v  247 (360)
T 1piw_A          179 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM--------G-ADHYIA-T-LEEGDWGEKYFDTFDLI  247 (360)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH--------T-CSEEEE-G-GGTSCHHHHSCSCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHc--------C-CCEEEc-C-cCchHHHHHhhcCCCEE
Confidence            58899999999999999999999999999999876542110000        0 000000 0 011 332222 468999


Q ss_pred             EEeccCChhhhcccCHHHHhcCCCCcEEEEcCCC
Q 017490          254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       254 ~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg  287 (370)
                      +.+++.++  ...+ ...++.++++..++.++..
T Consensus       248 id~~g~~~--~~~~-~~~~~~l~~~G~iv~~g~~  278 (360)
T 1piw_A          248 VVCASSLT--DIDF-NIMPKAMKVGGRIVSISIP  278 (360)
T ss_dssp             EECCSCST--TCCT-TTGGGGEEEEEEEEECCCC
T ss_pred             EECCCCCc--HHHH-HHHHHHhcCCCEEEEecCC
Confidence            99887521  1112 2456778888888888653

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=95.80  E-value=0.011  Score=57.83  Aligned_cols=95  Identities=20%  Similarity=0.170  Sum_probs=60.0

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHh---
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS---  248 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~---  248 (370)
                      -.|.+|.|+|.|.+|...++.++.+|+ +|++.+++..+......             -.++...  ...++.+.+.   
T Consensus       212 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~-------------lGa~~vi~~~~~~~~~~i~~~t  278 (404)
T 3ip1_A          212 RPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKE-------------LGADHVIDPTKENFVEAVLDYT  278 (404)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH-------------HTCSEEECTTTSCHHHHHHHHT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-------------cCCCEEEcCCCCCHHHHHHHHh
Confidence            368899999999999999999999999 99999977544211000             0011110  1123333222   


Q ss_pred             ---cCCEEEEeccCChhhhcccCHHHHhcC----CCCcEEEEcCC
Q 017490          249 ---KADVVVCCLSLNKQTAGIVNKSFLSSM----KKGSLLVNIAR  286 (370)
Q Consensus       249 ---~aDiV~l~lP~t~~t~~li~~~~l~~m----k~gailIN~sR  286 (370)
                         ..|+|+-++.....+.    ...++.+    +++..++.++-
T Consensus       279 ~g~g~D~vid~~g~~~~~~----~~~~~~l~~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          279 NGLGAKLFLEATGVPQLVW----PQIEEVIWRARGINATVAIVAR  319 (404)
T ss_dssp             TTCCCSEEEECSSCHHHHH----HHHHHHHHHCSCCCCEEEECSC
T ss_pred             CCCCCCEEEECCCCcHHHH----HHHHHHHHhccCCCcEEEEeCC
Confidence               4899999887542221    1233334    89999998874

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=95.80  E-value=0.0064  Score=58.03  Aligned_cols=104  Identities=13%  Similarity=0.157  Sum_probs=60.2

Q ss_pred             ceEEEEecCchhHHHHHHhccCCC--EEEEEcCCCccccc-cccccchhhhccccccccccccCCCCCHHHHHhcCCEEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQ-VSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  254 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  254 (370)
                      ++|+|+|.|.||..+|..+...|+  +|..+|+....... ..+.. ......     .........+..+.++.||+|+
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~-~~~~~~-----~~~~~v~~~~~~~a~~~aDvVi   74 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMR-ESSPIH-----GFDTRVTGTNDYGPTEDSDVCI   74 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHH-HHHHHH-----TCCCEEEEESSSGGGTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHh-cccccc-----CCCcEEEECCCHHHhCCCCEEE
Confidence            479999999999999999887676  89999987643110 00000 000000     0000000123457789999999


Q ss_pred             EeccCChh---hh-ccc--CH-------HHHhcCCCCcEEEEcCCC
Q 017490          255 CCLSLNKQ---TA-GIV--NK-------SFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       255 l~lP~t~~---t~-~li--~~-------~~l~~mk~gailIN~sRg  287 (370)
                      ++.+....   +| .++  |.       +.+....|.+++++++..
T Consensus        75 i~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNP  120 (314)
T 3nep_X           75 ITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANP  120 (314)
T ss_dssp             ECCCC-------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCSS
T ss_pred             ECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCCc
Confidence            99764311   11 122  21       234456789999999854

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=95.78  E-value=0.0018  Score=63.82  Aligned_cols=79  Identities=16%  Similarity=0.264  Sum_probs=48.0

Q ss_pred             ceEEEEecCchhHHHHHHhccCC---CEEEEEcCCCccccccccccchhhhcc-ccccccccccCCCCCHHHHHhc--CC
Q 017490          178 KTVFILGFGNIGVELAKRLRPFG---VKIIATKRSWASHSQVSCQSSALAVKN-GIIDDLVDEKGCHEDIFEFASK--AD  251 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G---~~V~~~dr~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~ell~~--aD  251 (370)
                      ++|+|+|.|.||+.+++.|...|   .+|.+++|+..+......   .+.... ..+..........+++++++++  +|
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~---~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~D   78 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQ---SIKAKGYGEIDITTVDADSIEELVALINEVKPQ   78 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHH---HHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHH---HhhhhcCCceEEEEecCCCHHHHHHHHHhhCCC
Confidence            47999999999999999998887   499999997654211000   000000 0000000000012456778887  89


Q ss_pred             EEEEeccC
Q 017490          252 VVVCCLSL  259 (370)
Q Consensus       252 iV~l~lP~  259 (370)
                      +|+.+.|.
T Consensus        79 vVin~ag~   86 (405)
T 4ina_A           79 IVLNIALP   86 (405)
T ss_dssp             EEEECSCG
T ss_pred             EEEECCCc
Confidence            99999874

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.75  E-value=0.0055  Score=59.40  Aligned_cols=94  Identities=17%  Similarity=0.213  Sum_probs=60.5

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCC---HHHHHhcCCE
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHED---IFEFASKADV  252 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~ell~~aDi  252 (370)
                      .|.+|.|+|.|.||...++.++.+|++|++.+++..+.......             .++....+.+   .+++....|+
T Consensus       194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~l-------------Ga~~vi~~~~~~~~~~~~~g~Dv  260 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKAL-------------GADEVVNSRNADEMAAHLKSFDF  260 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH-------------TCSEEEETTCHHHHHTTTTCEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-------------CCcEEeccccHHHHHHhhcCCCE
Confidence            57899999999999999999999999999999875442110000             0000001111   1222246799


Q ss_pred             EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCC
Q 017490          253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg  287 (370)
                      |+-++.....     -...++.|+++..++.++..
T Consensus       261 vid~~g~~~~-----~~~~~~~l~~~G~iv~~G~~  290 (369)
T 1uuf_A          261 ILNTVAAPHN-----LDDFTTLLKRDGTMTLVGAP  290 (369)
T ss_dssp             EEECCSSCCC-----HHHHHTTEEEEEEEEECCCC
T ss_pred             EEECCCCHHH-----HHHHHHHhccCCEEEEeccC
Confidence            9888764321     13567778888888888653

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=95.74  E-value=0.051  Score=54.44  Aligned_cols=127  Identities=15%  Similarity=0.096  Sum_probs=69.5

Q ss_pred             cccccCceEEEEecCchhHHHHHHhccCCCEEE-EEcCC-------Cccccccccccchhhhcc-cccccccccc-C-CC
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKII-ATKRS-------WASHSQVSCQSSALAVKN-GIIDDLVDEK-G-CH  240 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~-~~dr~-------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~~  240 (370)
                      +.++.|++|.|-|+|++|+..|+.|..+|.+|+ +.|.+       .-... .......+...+ +.+.+..... + .+
T Consensus       247 G~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~G~i~dp~Gid~e-dl~~l~~~k~~~~g~v~~~~~~~~~a~~  325 (470)
T 2bma_A          247 NIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHE-NLEFLIDLKEEKKGRIKEYLNHSSTAKY  325 (470)
T ss_dssp             TCCGGGCEEEEECSSHHHHHHHHHHHHTTCEECEEEETTEEEECSSCCCHH-HHHHHHHHHTTTTCCGGGGGGTCSSCEE
T ss_pred             cCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEEeCCceEECCCCCCHH-HHHHHHHHHHhcCCcHHHHHhhcCCcEE
Confidence            467899999999999999999999999999998 44432       11000 000000000000 0111111100 0 01


Q ss_pred             CCHHHHH-hcCCEEEEeccCChhhhcccCHHHHhcC-CCC-cEEEEcCCCcccCHHHHHHHHHhCCceE
Q 017490          241 EDIFEFA-SKADVVVCCLSLNKQTAGIVNKSFLSSM-KKG-SLLVNIARGGLLDYEAIAHYLECGHLGG  306 (370)
Q Consensus       241 ~~l~ell-~~aDiV~l~lP~t~~t~~li~~~~l~~m-k~g-ailIN~sRg~~vd~~aL~~aL~~g~i~g  306 (370)
                      .+.++++ ..|||++-|-     +.+.|+.+....+ +.+ .+++--+.+++ ..+| .+.|.+..|..
T Consensus       326 v~~~~~~~~~~DI~iPcA-----~~~~I~~~na~~l~~~~ak~V~EgAN~p~-T~eA-~~~L~~rGIl~  387 (470)
T 2bma_A          326 FPNEKPWGVPCTLAFPCA-----TQNDVDLDQAKLLQKNGCILVGEGANMPS-TVDA-INLFKSNNIIY  387 (470)
T ss_dssp             CSSCCTTSSCCSEEEECS-----STTCBCSHHHHHHHHTTCCEEECCSSSCB-CHHH-HHHHHHTTCEE
T ss_pred             ecCcCeeecCccEEEecc-----ccCcCCHHHHHHHHhcCcEEEEeCCCCCC-CHHH-HHHHHHCCcEE
Confidence            1111222 3789887764     4456776655555 122 36666667775 5555 67888887763

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=95.74  E-value=0.02  Score=55.53  Aligned_cols=97  Identities=14%  Similarity=0.192  Sum_probs=54.9

Q ss_pred             cCceEEEEe-cCchhHHHHHHhccCC-CEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEE
Q 017490          176 LGKTVFILG-FGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  253 (370)
Q Consensus       176 ~g~tvGIiG-lG~IG~~vA~~l~~~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  253 (370)
                      ...+|||+| .|.||+.+++.|.... +++.++......... .+  ..+....+..   .... ...+ ++.+..+|+|
T Consensus        15 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~-~~--~~~~~~~~~v---~~dl-~~~~-~~~~~~vDvV   86 (359)
T 1xyg_A           15 KDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQS-ME--SVFPHLRAQK---LPTL-VSVK-DADFSTVDAV   86 (359)
T ss_dssp             CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSC-HH--HHCGGGTTSC---CCCC-BCGG-GCCGGGCSEE
T ss_pred             cCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCC-HH--HhCchhcCcc---cccc-eecc-hhHhcCCCEE
Confidence            346899999 8999999999987654 477777643222100 00  0000000000   0000 0112 4456789999


Q ss_pred             EEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       254 ~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                      +.|+|....      .+.....+.|+.+|+.|-
T Consensus        87 f~atp~~~s------~~~a~~~~aG~~VId~sa  113 (359)
T 1xyg_A           87 FCCLPHGTT------QEIIKELPTALKIVDLSA  113 (359)
T ss_dssp             EECCCTTTH------HHHHHTSCTTCEEEECSS
T ss_pred             EEcCCchhH------HHHHHHHhCCCEEEECCc
Confidence            999985432      222222367899999875

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=95.72  E-value=0.011  Score=55.10  Aligned_cols=39  Identities=23%  Similarity=0.377  Sum_probs=34.9

Q ss_pred             ccccCceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          173 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       173 ~~l~g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      .++.|+++.|+| .|.||+++++.|...|++|++++|+..
T Consensus       115 ~~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~  154 (287)
T 1lu9_A          115 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLD  154 (287)
T ss_dssp             SCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHH
Confidence            347899999999 999999999999999999999998743

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=95.72  E-value=0.0083  Score=57.40  Aligned_cols=109  Identities=16%  Similarity=0.138  Sum_probs=61.7

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccc-cccccchhhhccccccccccccCCCCCHHHHHhcCCEE
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQ-VSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  253 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  253 (370)
                      ..++|+|||.|.+|..+|..+...|+ +|..+|+....... ..+.. .......    .-.......+ .+.++.||+|
T Consensus         4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~-~~~~~~~----~~~~v~~t~d-~~a~~~aDvV   77 (321)
T 3p7m_A            4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLL-QTCPIEG----VDFKVRGTND-YKDLENSDVV   77 (321)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHH-TTHHHHT----CCCCEEEESC-GGGGTTCSEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHH-hhhhhcC----CCcEEEEcCC-HHHHCCCCEE
Confidence            35789999999999999999877666 99999997654210 00000 0000000    0000001123 4688999999


Q ss_pred             EEeccCC--hh-hhc-cc--CH-------HHHhcCCCCcEEEEcCCCcccCH
Q 017490          254 VCCLSLN--KQ-TAG-IV--NK-------SFLSSMKKGSLLVNIARGGLLDY  292 (370)
Q Consensus       254 ~l~lP~t--~~-t~~-li--~~-------~~l~~mk~gailIN~sRg~~vd~  292 (370)
                      +++.+..  +. ++. ++  |.       +.+....|++++++++.  ++|.
T Consensus        78 Ii~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN--Pvd~  127 (321)
T 3p7m_A           78 IVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITN--PLDI  127 (321)
T ss_dssp             EECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS--SHHH
T ss_pred             EEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecC--chHH
Confidence            9996532  11 111 12  11       12333458999999954  4443

>3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans}

Probab=95.70  E-value=0.011  Score=57.39  Aligned_cols=92  Identities=18%  Similarity=0.209  Sum_probs=62.3

Q ss_pred             CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEe
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  256 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  256 (370)
                      -.++-|+|.|.+|+++|+.++.+|++|.++|+++.-..                             .+.++.+|-++..
T Consensus       199 ~~~L~I~GaGhva~aLa~la~~lgf~V~v~D~R~~~~~-----------------------------~~~fp~a~~v~~~  249 (362)
T 3on5_A          199 KERLIIFGAGPDVPPLVTFASNVGFYTVVTDWRPNQCE-----------------------------KHFFPDADEIIVD  249 (362)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHHTEEEEEEESCGGGGC-----------------------------GGGCTTCSEEEES
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEECCCccccc-----------------------------cccCCCceEEecC
Confidence            34799999999999999999999999999997643210                             0113345645443


Q ss_pred             ccCChhhhcccCHHHHhc--CCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEE
Q 017490          257 LSLNKQTAGIVNKSFLSS--MKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLG  308 (370)
Q Consensus       257 lP~t~~t~~li~~~~l~~--mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~  308 (370)
                      -|          .+.+..  +.+++.+|=+.++.-.|...|.++|+. ...+.|
T Consensus       250 ~p----------~~~~~~~~~~~~t~vvv~TH~h~~D~~~L~~aL~~-~~~YiG  292 (362)
T 3on5_A          250 FP----------ADFLRKFLIRPDDFVLIMTHHFQKDQEILHFLLEK-ELRYIG  292 (362)
T ss_dssp             CH----------HHHHHHSCCCTTCEEEECCSCHHHHHHHHHHHSSS-CCSEEE
T ss_pred             CH----------HHHHhhcCCCCCeEEEEEeCCchhhHHHHHHHhcC-CCCEEE
Confidence            33          112222  566777887888888888888888876 344343

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=95.69  E-value=0.11  Score=51.73  Aligned_cols=139  Identities=18%  Similarity=0.206  Sum_probs=95.9

Q ss_pred             CCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEecCchhHHHHHHhccCCC
Q 017490          122 CGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV  201 (370)
Q Consensus       122 ~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~  201 (370)
                      ..|+|.|.-      -..+|=-+++.+++.+|-.                ++.|++.+|.|.|.|..|..+|+.+...|.
T Consensus       186 ~~ipvFnDD------~qGTA~V~lAgllnAlki~----------------gk~l~d~riV~~GAGaAGigia~ll~~~G~  243 (487)
T 3nv9_A          186 CDIPVWHDD------QQGTASVTLAGLLNALKLV----------------KKDIHECRMVFIGAGSSNTTCLRLIVTAGA  243 (487)
T ss_dssp             CSSCEEETT------THHHHHHHHHHHHHHHHHH----------------TCCGGGCCEEEECCSHHHHHHHHHHHHTTC
T ss_pred             ccCCccccc------cchHHHHHHHHHHHHHHHh----------------CCChhhcEEEEECCCHHHHHHHHHHHHcCC
Confidence            379999962      2557878888888888743                578999999999999999999999999998


Q ss_pred             ---EEEEEcCCCccc--cccccccchhhhcccccccccccc--CCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhc
Q 017490          202 ---KIIATKRSWASH--SQVSCQSSALAVKNGIIDDLVDEK--GCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSS  274 (370)
Q Consensus       202 ---~V~~~dr~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~  274 (370)
                         +|+.+|+..--.  .......+.+..+.    ++....  ....+|.|+++.+|+++-+ ...  ..++++++.++.
T Consensus       244 ~~~~i~l~D~~Gli~~~R~~l~~~~~~~~k~----~~A~~~n~~~~~~L~eav~~adVlIG~-S~~--~pg~ft~e~V~~  316 (487)
T 3nv9_A          244 DPKKIVMFDSKGSLHNGREDIKKDTRFYRKW----EICETTNPSKFGSIAEACVGADVLISL-STP--GPGVVKAEWIKS  316 (487)
T ss_dssp             CGGGEEEEETTEECCTTCHHHHHCGGGHHHH----HHHHHSCTTCCCSHHHHHTTCSEEEEC-CCS--SCCCCCHHHHHT
T ss_pred             CcccEEEEeccccccCCcchhhhhcccHHHH----HHHHhcccccCCCHHHHHhcCCEEEEe-ccc--CCCCCCHHHHHh
Confidence               799999863110  00000000000000    011111  0235899999999977654 211  147899999999


Q ss_pred             CCCCcEEEEcCCCcc
Q 017490          275 MKKGSLLVNIARGGL  289 (370)
Q Consensus       275 mk~gailIN~sRg~~  289 (370)
                      |.+..++.=.|+...
T Consensus       317 Ma~~PIIFaLSNPtp  331 (487)
T 3nv9_A          317 MGEKPIVFCCANPVP  331 (487)
T ss_dssp             SCSSCEEEECCSSSC
T ss_pred             hcCCCEEEECCCCCc
Confidence            999999999998654

>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}

Probab=95.69  E-value=0.044  Score=52.68  Aligned_cols=102  Identities=12%  Similarity=0.086  Sum_probs=67.1

Q ss_pred             ccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHHhc
Q 017490          175 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASK  249 (370)
Q Consensus       175 l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~  249 (370)
                      +.|++|++||= +++.++++..+..+|++|.+..|..-.......   +      .+.+.+...+    ...++++.++.
T Consensus       177 l~glkva~vGD~~nva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~---~------~~~~~a~~~G~~v~~~~d~~eav~~  247 (340)
T 4ep1_A          177 FKGIKLAYVGDGNNVCHSLLLASAKVGMHMTVATPVGYRPNEEIV---K------KALAIAKETGAEIEILHNPELAVNE  247 (340)
T ss_dssp             CTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHH---H------HHHHHHHHHCCCEEEESCHHHHHTT
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCCHHHH---H------HHHHHHHHcCCeEEEECCHHHHhCC
Confidence            78999999994 678888899999999999998764322100000   0      0000001111    23689999999


Q ss_pred             CCEEEEeccCC------hh-----hhcccCHHHHhcCCCCcEEEEcC
Q 017490          250 ADVVVCCLSLN------KQ-----TAGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       250 aDiV~l~lP~t------~~-----t~~li~~~~l~~mk~gailIN~s  285 (370)
                      +|+|..-.=..      ++     ..+-++.+.++.+|++++|.-+.
T Consensus       248 aDVvyt~~w~smg~e~~~~~~~~~~~y~vt~ell~~ak~dai~MHcL  294 (340)
T 4ep1_A          248 ADFIYTDVWMSMGQEGEEEKYTLFQPYQINKELVKHAKQTYHFLHCL  294 (340)
T ss_dssp             CSEEEECCC------CHHHHHHHHGGGCBCHHHHTTSCTTCEEEECS
T ss_pred             CCEEEecCccCCCCCchHHHHHHhccccCCHHHHHhcCCCcEEECCC
Confidence            99998743211      01     12467899999999999999875

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=95.68  E-value=0.019  Score=55.64  Aligned_cols=102  Identities=15%  Similarity=0.123  Sum_probs=57.8

Q ss_pred             CceEEEEe-cCchhHHHHHHhccCC------CEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhc
Q 017490          177 GKTVFILG-FGNIGVELAKRLRPFG------VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK  249 (370)
Q Consensus       177 g~tvGIiG-lG~IG~~vA~~l~~~G------~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  249 (370)
                      -.+|+|+| .|.+|+.+.+.|...+      .+|..+.+........ .   +.+.+   .....+-.....+. +.+..
T Consensus         9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~-~---~~~~~---l~~~~~~~~~~~~~-~~~~~   80 (352)
T 2nqt_A            9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTL-G---EHHPH---LTPLAHRVVEPTEA-AVLGG   80 (352)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBG-G---GTCTT---CGGGTTCBCEECCH-HHHTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCch-h---hhccc---ccccceeeeccCCH-HHhcC
Confidence            36899999 9999999999998776      4776664321110000 0   00000   00000000001133 34568


Q ss_pred             CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCH
Q 017490          250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDY  292 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~  292 (370)
                      +|+|+.|+|...      .++..+.++.|..+|+.|...-.+.
T Consensus        81 ~DvVf~alg~~~------s~~~~~~~~~G~~vIDlSa~~R~~~  117 (352)
T 2nqt_A           81 HDAVFLALPHGH------SAVLAQQLSPETLIIDCGADFRLTD  117 (352)
T ss_dssp             CSEEEECCTTSC------CHHHHHHSCTTSEEEECSSTTTCSC
T ss_pred             CCEEEECCCCcc------hHHHHHHHhCCCEEEEECCCccCCc
Confidence            999999998652      3444444466899999986544443

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=95.68  E-value=0.0076  Score=57.82  Aligned_cols=106  Identities=17%  Similarity=0.116  Sum_probs=60.5

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCE
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  252 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  252 (370)
                      -.+++|+|||.|.||..+|..+...|.  ++..+|+......-. .  .++.  +.  ...........+..+.++.||+
T Consensus         7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~-a--~DL~--~~--~~~~~~~~i~~~~~~a~~~aDi   79 (326)
T 3vku_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGD-A--IDLE--DA--LPFTSPKKIYSAEYSDAKDADL   79 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHH-H--HHHH--TT--GGGSCCCEEEECCGGGGTTCSE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHH-H--hhHh--hh--hhhcCCcEEEECcHHHhcCCCE
Confidence            356799999999999999999987776  899999865421100 0  0000  00  0000000011233567899999


Q ss_pred             EEEeccCC--h-hhh-ccc--CH-------HHHhcCCCCcEEEEcCCC
Q 017490          253 VVCCLSLN--K-QTA-GIV--NK-------SFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       253 V~l~lP~t--~-~t~-~li--~~-------~~l~~mk~gailIN~sRg  287 (370)
                      |+++....  | .+| .++  |.       +.+....|.+++++++..
T Consensus        80 Vvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtNP  127 (326)
T 3vku_A           80 VVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANP  127 (326)
T ss_dssp             EEECCCCC----------------CHHHHHHHHHTTTCCSEEEECSSS
T ss_pred             EEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccCc
Confidence            99986532  1 122 233  21       234556789999999743

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=95.68  E-value=0.0097  Score=61.39  Aligned_cols=37  Identities=27%  Similarity=0.539  Sum_probs=33.9

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCC
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  209 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~  209 (370)
                      ..|++++|.|||+|.+|.++|+.|...|. ++..+|..
T Consensus       323 ~kL~~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D  360 (598)
T 3vh1_A          323 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG  360 (598)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            67999999999999999999999999998 78898764

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=95.68  E-value=0.011  Score=56.73  Aligned_cols=94  Identities=21%  Similarity=0.274  Sum_probs=60.6

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCC-----CHH-HHH-
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHE-----DIF-EFA-  247 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~-ell-  247 (370)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++..+......             -.++....+.     ++. ++. 
T Consensus       171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~-------------lGa~~vi~~~~~~~~~~~~~i~~  237 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE-------------IGADLVLQISKESPQEIARKVEG  237 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH-------------TTCSEEEECSSCCHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-------------hCCCEEEcCcccccchHHHHHHH
Confidence            57899999999999999999999999 99999976543110000             0000000011     111 221 


Q ss_pred             ---hcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCC
Q 017490          248 ---SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       248 ---~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg  287 (370)
                         ...|+|+-++......     ...++.++++..++.++-+
T Consensus       238 ~~~~g~D~vid~~g~~~~~-----~~~~~~l~~~G~iv~~G~~  275 (356)
T 1pl8_A          238 QLGCKPEVTIECTGAEASI-----QAGIYATRSGGTLVLVGLG  275 (356)
T ss_dssp             HHTSCCSEEEECSCCHHHH-----HHHHHHSCTTCEEEECSCC
T ss_pred             HhCCCCCEEEECCCChHHH-----HHHHHHhcCCCEEEEEecC
Confidence               2489999987643221     3567789999999998753

>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1

Probab=95.68  E-value=0.018  Score=54.72  Aligned_cols=99  Identities=19%  Similarity=0.157  Sum_probs=66.8

Q ss_pred             cccCceEEEEec---CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHH
Q 017490          174 TLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEF  246 (370)
Q Consensus       174 ~l~g~tvGIiGl---G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~el  246 (370)
                      .+.|++|++||=   |++.++++..+..+|++|.+..|..-..  +..          . .+.+.+.+    ...++++.
T Consensus       152 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~--~~~----------~-~~~~~~~g~~~~~~~d~~ea  218 (308)
T 1ml4_A          152 RIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRM--PRH----------I-VEELREKGMKVVETTTLEDV  218 (308)
T ss_dssp             CSSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCC--CHH----------H-HHHHHHTTCCEEEESCTHHH
T ss_pred             CCCCeEEEEeCCCCcCchHHHHHHHHHHCCCEEEEECCccccC--CHH----------H-HHHHHHcCCeEEEEcCHHHH
Confidence            478999999997   4899999999999999999987642211  000          0 01111112    23689999


Q ss_pred             HhcCCEEEEeccCC------hhh-----hcccCHHHHhcCCCCcEEEEcC
Q 017490          247 ASKADVVVCCLSLN------KQT-----AGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       247 l~~aDiV~l~lP~t------~~t-----~~li~~~~l~~mk~gailIN~s  285 (370)
                      ++++|+|..-.=-.      ++.     .+-++.+.++.+||+++|.-+.
T Consensus       219 v~~aDvvyt~~~q~er~~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~l  268 (308)
T 1ml4_A          219 IGKLDVLYVTRIQKERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPL  268 (308)
T ss_dssp             HTTCSEEEECCCCGGGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECCS
T ss_pred             hcCCCEEEECCccccccCCHHHHHHHhcCcccCHHHHhhcCCCCEEECCC
Confidence            99999998754211      111     2456788888888888888663

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=95.67  E-value=0.018  Score=50.41  Aligned_cols=97  Identities=15%  Similarity=0.166  Sum_probs=57.7

Q ss_pred             ceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCCCCHHHHHhcCCEEEE
Q 017490          178 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVVC  255 (370)
Q Consensus       178 ~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~l  255 (370)
                      ++|.|+| .|.||+.+++.|...|++|++++|+..+......   .        ..... ..... +. +.+..+|+|+.
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~---~--------~~~~~~D~~d~-~~-~~~~~~d~vi~   67 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTHK---D--------INILQKDIFDL-TL-SDLSDQNVVVD   67 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHCS---S--------SEEEECCGGGC-CH-HHHTTCSEEEE
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhccC---C--------CeEEeccccCh-hh-hhhcCCCEEEE
Confidence            3689999 5999999999999999999999997643110000   0        00000 00011 12 67889999998


Q ss_pred             eccCChhhhcc---cCHHHHhcCCC--CcEEEEcCCC
Q 017490          256 CLSLNKQTAGI---VNKSFLSSMKK--GSLLVNIARG  287 (370)
Q Consensus       256 ~lP~t~~t~~l---i~~~~l~~mk~--gailIN~sRg  287 (370)
                      +..........   .....+..|+.  ...+|++|..
T Consensus        68 ~ag~~~~~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~  104 (221)
T 3ew7_A           68 AYGISPDEAEKHVTSLDHLISVLNGTVSPRLLVVGGA  104 (221)
T ss_dssp             CCCSSTTTTTSHHHHHHHHHHHHCSCCSSEEEEECCC
T ss_pred             CCcCCccccchHHHHHHHHHHHHHhcCCceEEEEecc
Confidence            87654322110   01234444543  3567777654

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=95.67  E-value=0.0059  Score=58.56  Aligned_cols=104  Identities=18%  Similarity=0.183  Sum_probs=60.6

Q ss_pred             CceEEEEecCchhHHHHHHhccCCC--EEEEEcCCCccccc-cccccchhhhccccccccccccCCCCCHHHHHhcCCEE
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQ-VSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  253 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  253 (370)
                      .++|+|||.|.||..+|..+...|.  +|..+|+...+... ..+....+++..       .......+..+.++.||+|
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~-------~~v~i~~~~~~a~~~aDvV   77 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAP-------QPVKTSYGTYEDCKDADIV   77 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSS-------SCCEEEEECGGGGTTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhcccccc-------CCeEEEeCcHHHhCCCCEE
Confidence            5689999999999999999987776  89999986543110 000000000000       0000011224578899999


Q ss_pred             EEeccCC--h-hhh-ccc--CH-------HHHhcCCCCcEEEEcCCC
Q 017490          254 VCCLSLN--K-QTA-GIV--NK-------SFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       254 ~l~lP~t--~-~t~-~li--~~-------~~l~~mk~gailIN~sRg  287 (370)
                      +++.+..  + .++ .++  |.       +.+....|++++++++..
T Consensus        78 vi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtNP  124 (326)
T 3pqe_A           78 CICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNP  124 (326)
T ss_dssp             EECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSS
T ss_pred             EEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCCh
Confidence            9997532  1 111 112  21       234445789999999854

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=95.66  E-value=0.0035  Score=61.56  Aligned_cols=66  Identities=18%  Similarity=0.156  Sum_probs=45.7

Q ss_pred             ceEEEEecCchhHHHHHHhccC---------CCEEE-EEcCCCccccccccccchhhhccccccccccccC---CCCCHH
Q 017490          178 KTVFILGFGNIGVELAKRLRPF---------GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIF  244 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~---------G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~  244 (370)
                      .+|||||+|.||+..++.++..         +++|. ++|+++....                 ....+++   .+.+++
T Consensus        27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~-----------------~~a~~~~~~~~y~d~~   89 (412)
T 4gqa_A           27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAE-----------------RHAAKLGAEKAYGDWR   89 (412)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHH-----------------HHHHHHTCSEEESSHH
T ss_pred             ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHH-----------------HHHHHcCCCeEECCHH
Confidence            4899999999999888877643         45655 5677654321                 1122222   357899


Q ss_pred             HHHh--cCCEEEEeccCC
Q 017490          245 EFAS--KADVVVCCLSLN  260 (370)
Q Consensus       245 ell~--~aDiV~l~lP~t  260 (370)
                      ++++  +.|+|++++|..
T Consensus        90 ~ll~~~~vD~V~I~tp~~  107 (412)
T 4gqa_A           90 ELVNDPQVDVVDITSPNH  107 (412)
T ss_dssp             HHHHCTTCCEEEECSCGG
T ss_pred             HHhcCCCCCEEEECCCcH
Confidence            9996  579999999954

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=95.64  E-value=0.022  Score=54.07  Aligned_cols=108  Identities=19%  Similarity=0.187  Sum_probs=69.5

Q ss_pred             cccCceEEEE-ec-CchhHHHHHHhccCCCEEE-EEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHh--
Q 017490          174 TLLGKTVFIL-GF-GNIGVELAKRLRPFGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--  248 (370)
Q Consensus       174 ~l~g~tvGIi-Gl-G~IG~~vA~~l~~~G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--  248 (370)
                      -+..+++.|| |+ |+.|+.+++.++..|++++ .+|+......                .....   .+.+++++.+  
T Consensus        10 l~~~~siaVV~Gasg~~G~~~~~~l~~~G~~~v~~VnP~~~g~~----------------i~G~~---vy~sl~el~~~~   70 (305)
T 2fp4_A           10 YVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKT----------------HLGLP---VFNTVKEAKEQT   70 (305)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCE----------------ETTEE---EESSHHHHHHHH
T ss_pred             HhCCCcEEEEECCCCCHHHHHHHHHHHCCCcEEEEeCCCcCcce----------------ECCee---eechHHHhhhcC
Confidence            4567889999 99 9999999999999999944 5555421100                00111   3467889888  


Q ss_pred             cCCEEEEeccCChhhhcccCHHHHhcCCCC-cEEEEcCCCcc-cCHHHHHHHHHhC-Cce
Q 017490          249 KADVVVCCLSLNKQTAGIVNKSFLSSMKKG-SLLVNIARGGL-LDYEAIAHYLECG-HLG  305 (370)
Q Consensus       249 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~g-ailIN~sRg~~-vd~~aL~~aL~~g-~i~  305 (370)
                      ..|++++++|.. .....+.+ .++   .| ..+|+.+-|-. -++..+.+..++. .+.
T Consensus        71 ~vD~avI~vP~~-~~~~~~~e-~i~---~Gi~~iv~~t~G~~~~~~~~l~~~a~~~~gi~  125 (305)
T 2fp4_A           71 GATASVIYVPPP-FAAAAINE-AID---AEVPLVVCITEGIPQQDMVRVKHRLLRQGKTR  125 (305)
T ss_dssp             CCCEEEECCCHH-HHHHHHHH-HHH---TTCSEEEECCCCCCHHHHHHHHHHHTTCSSCE
T ss_pred             CCCEEEEecCHH-HHHHHHHH-HHH---CCCCEEEEECCCCChHHHHHHHHHHHhcCCcE
Confidence            899999999943 33334332 222   22 23466666642 2344799999887 665

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=95.64  E-value=0.0072  Score=57.57  Aligned_cols=95  Identities=18%  Similarity=0.192  Sum_probs=59.2

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHh----cCC
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS----KAD  251 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~----~aD  251 (370)
                      .|.+|.|+|.|.||...++.++.+|++|++.+++..+.......        + .+..++.  ...++.+.+.    ..|
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l--------G-a~~~i~~--~~~~~~~~~~~~~g~~d  234 (340)
T 3s2e_A          166 PGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRL--------G-AEVAVNA--RDTDPAAWLQKEIGGAH  234 (340)
T ss_dssp             TTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT--------T-CSEEEET--TTSCHHHHHHHHHSSEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHc--------C-CCEEEeC--CCcCHHHHHHHhCCCCC
Confidence            58899999999999999999999999999999875442110000        0 0000000  1123333332    578


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                      +|+.+....+..     ...++.++++..++.++-
T Consensus       235 ~vid~~g~~~~~-----~~~~~~l~~~G~iv~~G~  264 (340)
T 3s2e_A          235 GVLVTAVSPKAF-----SQAIGMVRRGGTIALNGL  264 (340)
T ss_dssp             EEEESSCCHHHH-----HHHHHHEEEEEEEEECSC
T ss_pred             EEEEeCCCHHHH-----HHHHHHhccCCEEEEeCC
Confidence            888776532221     345667888888888764

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=95.62  E-value=0.0038  Score=60.92  Aligned_cols=66  Identities=20%  Similarity=0.198  Sum_probs=47.0

Q ss_pred             ceEEEEecC-chhHHHHHHhccC-CCEEE-EEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhc--C
Q 017490          178 KTVFILGFG-NIGVELAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASK--A  250 (370)
Q Consensus       178 ~tvGIiGlG-~IG~~vA~~l~~~-G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~--a  250 (370)
                      .+|||||+| .+|+..++.+... ++++. ++|++..+..                 ....+++  .+.++++++++  .
T Consensus         3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~-----------------~~a~~~g~~~~~~~~ell~~~~v   65 (387)
T 3moi_A            3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRE-----------------RFGKEYGIPVFATLAEMMQHVQM   65 (387)
T ss_dssp             EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHH-----------------HHHHHHTCCEESSHHHHHHHSCC
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHH-----------------HHHHHcCCCeECCHHHHHcCCCC
Confidence            479999999 9999999988764 67765 6777644311                 1111222  35789999975  9


Q ss_pred             CEEEEeccCC
Q 017490          251 DVVVCCLSLN  260 (370)
Q Consensus       251 DiV~l~lP~t  260 (370)
                      |+|++++|..
T Consensus        66 D~V~i~tp~~   75 (387)
T 3moi_A           66 DAVYIASPHQ   75 (387)
T ss_dssp             SEEEECSCGG
T ss_pred             CEEEEcCCcH
Confidence            9999999954

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=95.62  E-value=0.01  Score=56.69  Aligned_cols=97  Identities=14%  Similarity=0.149  Sum_probs=62.3

Q ss_pred             cCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHh-----c
Q 017490          176 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----K  249 (370)
Q Consensus       176 ~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~  249 (370)
                      .|++|.|+|. |.||..+++.++..|++|++.+++..+......    +    + .....+ .....++.+.+.     .
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~----~----g-~~~~~d-~~~~~~~~~~~~~~~~~~  238 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRS----I----G-GEVFID-FTKEKDIVGAVLKATDGG  238 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHH----T----T-CCEEEE-TTTCSCHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHH----c----C-CceEEe-cCccHhHHHHHHHHhCCC
Confidence            5789999999 899999999999999999999987543211000    0    0 000010 011234544443     4


Q ss_pred             CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCC
Q 017490          250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg  287 (370)
                      .|+|+.+....+..     ...++.|+++..+|+++..
T Consensus       239 ~D~vi~~~g~~~~~-----~~~~~~l~~~G~iv~~g~~  271 (347)
T 2hcy_A          239 AHGVINVSVSEAAI-----EASTRYVRANGTTVLVGMP  271 (347)
T ss_dssp             EEEEEECSSCHHHH-----HHHTTSEEEEEEEEECCCC
T ss_pred             CCEEEECCCcHHHH-----HHHHHHHhcCCEEEEEeCC
Confidence            79998887632221     3566778899999998753

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=95.61  E-value=0.0075  Score=57.90  Aligned_cols=64  Identities=13%  Similarity=0.189  Sum_probs=44.3

Q ss_pred             ceEEEEecCchhH-HHHHHhccC-CCEEE-EEcCCCccccccccccchhhhccccccccccc---cC--CCCCHHHHHhc
Q 017490          178 KTVFILGFGNIGV-ELAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDE---KG--CHEDIFEFASK  249 (370)
Q Consensus       178 ~tvGIiGlG~IG~-~vA~~l~~~-G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~l~ell~~  249 (370)
                      .+|||||+|.||+ ..+..++.. +++|. ++|++ ...                  .....   .+  .+.++++++..
T Consensus         3 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~-~~~------------------~~a~~~~~~~~~~~~~~~~ll~~   63 (349)
T 3i23_A            3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLH-VNE------------------KAAAPFKEKGVNFTADLNELLTD   63 (349)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTT-CCH------------------HHHHHHHTTTCEEESCTHHHHSC
T ss_pred             eEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCC-HHH------------------HHHHhhCCCCCeEECCHHHHhcC
Confidence            4799999999998 567767654 78875 67776 211                  11111   11  34789999975


Q ss_pred             --CCEEEEeccCC
Q 017490          250 --ADVVVCCLSLN  260 (370)
Q Consensus       250 --aDiV~l~lP~t  260 (370)
                        .|+|++++|..
T Consensus        64 ~~~D~V~i~tp~~   76 (349)
T 3i23_A           64 PEIELITICTPAH   76 (349)
T ss_dssp             TTCCEEEECSCGG
T ss_pred             CCCCEEEEeCCcH
Confidence              89999999854

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=95.60  E-value=0.005  Score=60.12  Aligned_cols=66  Identities=14%  Similarity=0.187  Sum_probs=46.9

Q ss_pred             CceEEEEecCchhHHHHHHhccC--CCEEE-EEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCC
Q 017490          177 GKTVFILGFGNIGVELAKRLRPF--GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKAD  251 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~--G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aD  251 (370)
                      -.+|||||+| +|+.-++.++..  ++++. ++|++..+.                 .....+++  .+.++++++.+.|
T Consensus         7 ~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a-----------------~~~a~~~gv~~~~~~~~l~~~~D   68 (372)
T 4gmf_A            7 KQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARS-----------------RELAHAFGIPLYTSPEQITGMPD   68 (372)
T ss_dssp             CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHH-----------------HHHHHHTTCCEESSGGGCCSCCS
T ss_pred             CCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHH-----------------HHHHHHhCCCEECCHHHHhcCCC
Confidence            3589999999 799888888765  67866 567765442                 12223333  3578999999999


Q ss_pred             EEEEeccCC
Q 017490          252 VVVCCLSLN  260 (370)
Q Consensus       252 iV~l~lP~t  260 (370)
                      +|++++|..
T Consensus        69 ~v~i~~p~~   77 (372)
T 4gmf_A           69 IACIVVRST   77 (372)
T ss_dssp             EEEECCC--
T ss_pred             EEEEECCCc
Confidence            999999854

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=95.57  E-value=0.026  Score=56.84  Aligned_cols=99  Identities=11%  Similarity=0.168  Sum_probs=68.3

Q ss_pred             cccccCceEEEEecCc----------hhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCC
Q 017490          172 GETLLGKTVFILGFGN----------IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHE  241 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~----------IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (370)
                      +..+.|++|+|+|+--          =...+++.|...|.+|.+|||.....                 ..    ..-..
T Consensus       348 ~~~~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~~-----------------~~----~~~~~  406 (478)
T 3g79_A          348 GKKMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVVNY-----------------PG----VEISD  406 (478)
T ss_dssp             TCCSTTCEEEEECSSSSTTCSCCTTCTHHHHHHHHHHHTCEEEEECSSCCCB-----------------TT----BCEES
T ss_pred             ccCCCCCEEEEEeeecCCCCcchhcCcHHHHHHHHHHCCCEEEEECCCcccc-----------------cC----cceec
Confidence            3468999999999742          35889999999999999999865320                 00    00125


Q ss_pred             CHHHHHhcCCEEEEeccCChhhhcccCHHH-HhcCC-CCcEEEEcCCCcccCHHHH
Q 017490          242 DIFEFASKADVVVCCLSLNKQTAGIVNKSF-LSSMK-KGSLLVNIARGGLLDYEAI  295 (370)
Q Consensus       242 ~l~ell~~aDiV~l~lP~t~~t~~li~~~~-l~~mk-~gailIN~sRg~~vd~~aL  295 (370)
                      ++++.++.+|+|+++++. ++.+. ++-+. .+.|+ ++.+++|+ |+- .|.+.+
T Consensus       407 ~~~~~~~~ad~vvi~t~~-~~f~~-~d~~~~~~~~~~~~~~i~D~-rn~-~~~~~~  458 (478)
T 3g79_A          407 NLEEVVRNADAIVVLAGH-SAYSS-LKADWAKKVSAKANPVIIDG-RNV-IEPDEF  458 (478)
T ss_dssp             CHHHHHTTCSEEEECSCC-HHHHS-CCHHHHHHHHCCSSCEEEES-SSC-SCHHHH
T ss_pred             CHHHHHhcCCEEEEecCC-HHHHh-hhHHHHHHHhccCCCEEEEC-CCC-CCHHHH
Confidence            788999999999999874 34443 35443 44577 47899995 553 454443

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=95.57  E-value=0.013  Score=56.57  Aligned_cols=82  Identities=17%  Similarity=0.221  Sum_probs=44.8

Q ss_pred             ceEEEEecCchhHHHHHHhccC-CCEEEEE-cCCCccccccccccchhhhccc-cccccccccC--CCCCHHHHHhcCCE
Q 017490          178 KTVFILGFGNIGVELAKRLRPF-GVKIIAT-KRSWASHSQVSCQSSALAVKNG-IIDDLVDEKG--CHEDIFEFASKADV  252 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~-G~~V~~~-dr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~l~ell~~aDi  252 (370)
                      .+|||+|+|.||+.+++.+... +++|.+. |++..... .......+..-.+ .+.+.+...+  ...++++++.++|+
T Consensus         2 ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~-~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDv   80 (340)
T 1b7g_O            2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEA-FIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDI   80 (340)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHH-HHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSE
T ss_pred             eEEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHH-HHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCCCE
Confidence            3799999999999999998754 5677654 44322100 0000000000000 0111111111  12366777789999


Q ss_pred             EEEeccCC
Q 017490          253 VVCCLSLN  260 (370)
Q Consensus       253 V~l~lP~t  260 (370)
                      |+.|+|..
T Consensus        81 V~~aTp~~   88 (340)
T 1b7g_O           81 VVDTTPNG   88 (340)
T ss_dssp             EEECCSTT
T ss_pred             EEECCCCc
Confidence            99999854

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=95.56  E-value=0.012  Score=60.69  Aligned_cols=47  Identities=23%  Similarity=0.338  Sum_probs=38.2

Q ss_pred             hcccCCCCcccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCC
Q 017490          164 QKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  210 (370)
Q Consensus       164 ~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~  210 (370)
                      .+-|.......|++++|.|||+|.+|.++|+.|...|. ++..+|...
T Consensus       313 wRllp~~g~ekL~~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~  360 (615)
T 4gsl_A          313 WRILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT  360 (615)
T ss_dssp             HHTCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             HhhcchhhHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC
Confidence            34444443457999999999999999999999998898 788988754

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=95.54  E-value=0.0063  Score=56.99  Aligned_cols=91  Identities=18%  Similarity=0.193  Sum_probs=56.9

Q ss_pred             cCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCC---CCHHHHHhcCC
Q 017490          176 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCH---EDIFEFASKAD  251 (370)
Q Consensus       176 ~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~ell~~aD  251 (370)
                      .|++|.|+|. |.||...++.++.+|++|++.+++..+......             -..+....+   .++.+.+...|
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-------------~ga~~~~~~~~~~~~~~~~~~~d  191 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA-------------LGAEEAATYAEVPERAKAWGGLD  191 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH-------------TTCSEEEEGGGHHHHHHHTTSEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-------------cCCCEEEECCcchhHHHHhcCce
Confidence            4789999998 999999999999999999999986544211000             000000001   12222235678


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                      +|+. +.. +.     -...++.|+++..++.++.
T Consensus       192 ~vid-~g~-~~-----~~~~~~~l~~~G~~v~~g~  219 (302)
T 1iz0_A          192 LVLE-VRG-KE-----VEESLGLLAHGGRLVYIGA  219 (302)
T ss_dssp             EEEE-CSC-TT-----HHHHHTTEEEEEEEEEC--
T ss_pred             EEEE-CCH-HH-----HHHHHHhhccCCEEEEEeC
Confidence            8887 653 21     2456777888888887764

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=95.54  E-value=0.015  Score=55.66  Aligned_cols=107  Identities=12%  Similarity=0.094  Sum_probs=61.4

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccc-cccccchhhhccccccccccccCCCCCHHHHHhcCCE
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQ-VSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  252 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  252 (370)
                      .+.++|+|||.|.+|..+|..+...|+ +|..+|+....... ..+.. ......    ..........+. +.++.||+
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~-~~~~~~----~~~~~v~~t~d~-~a~~~aDi   78 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIA-ESSPVD----GFDAKFTGANDY-AAIEGADV   78 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHH-HHHHHH----TCCCCEEEESSG-GGGTTCSE
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHh-chhhhc----CCCCEEEEeCCH-HHHCCCCE
Confidence            456799999999999999999987787 99999987654210 00000 000000    000000011344 78899999


Q ss_pred             EEEeccCC--hh-hhc-cc--CHH-------HHhcCCCCcEEEEcCCC
Q 017490          253 VVCCLSLN--KQ-TAG-IV--NKS-------FLSSMKKGSLLVNIARG  287 (370)
Q Consensus       253 V~l~lP~t--~~-t~~-li--~~~-------~l~~mk~gailIN~sRg  287 (370)
                      |+++.+..  +. ++. ++  |..       .+....|++++++++..
T Consensus        79 VIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtNP  126 (324)
T 3gvi_A           79 VIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNP  126 (324)
T ss_dssp             EEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred             EEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCCC
Confidence            99997532  11 111 22  211       23334689999999854

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=95.53  E-value=0.0088  Score=57.82  Aligned_cols=66  Identities=9%  Similarity=0.038  Sum_probs=46.3

Q ss_pred             CceEEEEecCchhH-HHHHHhccCCCEEE-EEcCCCccccccccccchhhhccccccccccccC---CCCCHHHHHhc--
Q 017490          177 GKTVFILGFGNIGV-ELAKRLRPFGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFASK--  249 (370)
Q Consensus       177 g~tvGIiGlG~IG~-~vA~~l~~~G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~~--  249 (370)
                      -.+|||||+|.+|. .++..++.-|++|. ++|+++.+..                 ....+++   .+.++++++++  
T Consensus        26 ~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~-----------------~~a~~~~~~~~~~~~~~ll~~~~   88 (361)
T 3u3x_A           26 ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAA-----------------EFSAVYADARRIATAEEILEDEN   88 (361)
T ss_dssp             CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHH-----------------HHHHHSSSCCEESCHHHHHTCTT
T ss_pred             CcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHH-----------------HHHHHcCCCcccCCHHHHhcCCC
Confidence            35899999999995 56777766789855 6777654311                 1122222   35799999975  


Q ss_pred             CCEEEEeccC
Q 017490          250 ADVVVCCLSL  259 (370)
Q Consensus       250 aDiV~l~lP~  259 (370)
                      .|+|++++|.
T Consensus        89 vD~V~I~tp~   98 (361)
T 3u3x_A           89 IGLIVSAAVS   98 (361)
T ss_dssp             CCEEEECCCH
T ss_pred             CCEEEEeCCh
Confidence            8999999984

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=95.49  E-value=0.0053  Score=58.87  Aligned_cols=123  Identities=16%  Similarity=0.080  Sum_probs=66.2

Q ss_pred             CceEEEEecCchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEE
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  254 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  254 (370)
                      ..+|+|||.|.+|..++..+...+.  +|..+|....+.....   .++.  +.  ...........+..+.++.||+|+
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~---~dl~--~~--~~~~~~~~i~~~~~~a~~~aDvVi   81 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDA---IDLS--NA--LPFTSPKKIYSAEYSDAKDADLVV   81 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHH---HHHH--TT--GGGSCCCEEEECCGGGGGGCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHH---HHHH--HH--HHhcCCeEEEECCHHHhCCCCEEE
Confidence            4689999999999999999876565  8999998643311000   0000  00  000000000113456789999999


Q ss_pred             EeccCChhhhcc-------cCH-------HHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHhCCceEE
Q 017490          255 CCLSLNKQTAGI-------VNK-------SFLSSMKKGSLLVNIARGGLLDYEAIAHY--LECGHLGGL  307 (370)
Q Consensus       255 l~lP~t~~t~~l-------i~~-------~~l~~mk~gailIN~sRg~~vd~~aL~~a--L~~g~i~ga  307 (370)
                      ++.+... ..++       .|.       +.+....|.+++|+++..-=+....+.+.  +...++.|.
T Consensus        82 i~ag~~~-k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~~k~s~~p~~rviG~  149 (326)
T 2zqz_A           82 ITAGAPQ-KPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDILTYATWKLSGFPKNRVVGS  149 (326)
T ss_dssp             ECCCCC------CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             EcCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHHcCCCHHHEEEc
Confidence            9986432 2221       111       12233368999999854332323333333  233356555

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=95.48  E-value=0.03  Score=53.02  Aligned_cols=36  Identities=22%  Similarity=0.040  Sum_probs=31.0

Q ss_pred             ccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCC
Q 017490          175 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       175 l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      +..++|.|+|. |.||+.+++.|...|++|++.+|+.
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   44 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPG   44 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence            34678999997 9999999999999999999999975

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=95.47  E-value=0.0061  Score=58.33  Aligned_cols=66  Identities=18%  Similarity=0.187  Sum_probs=47.1

Q ss_pred             ceEEEEecC-chhHHHHHHhccC--CCEE-EEEcCCCccccccccccchhhhccccccccccccC---CCCCHHHHHh--
Q 017490          178 KTVFILGFG-NIGVELAKRLRPF--GVKI-IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFAS--  248 (370)
Q Consensus       178 ~tvGIiGlG-~IG~~vA~~l~~~--G~~V-~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~--  248 (370)
                      .+|||||+| .+|+..++.++..  ++++ .++|+++....                 .....++   .+.+++++++  
T Consensus        19 irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~-----------------~~a~~~~~~~~~~~~~~ll~~~   81 (340)
T 1zh8_A           19 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAE-----------------EFAKMVGNPAVFDSYEELLESG   81 (340)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHH-----------------HHHHHHSSCEEESCHHHHHHSS
T ss_pred             eeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHH-----------------HHHHHhCCCcccCCHHHHhcCC
Confidence            589999999 8999999988876  5676 56787654311                 1111111   2578999996  


Q ss_pred             cCCEEEEeccCC
Q 017490          249 KADVVVCCLSLN  260 (370)
Q Consensus       249 ~aDiV~l~lP~t  260 (370)
                      +.|+|++++|..
T Consensus        82 ~vD~V~i~tp~~   93 (340)
T 1zh8_A           82 LVDAVDLTLPVE   93 (340)
T ss_dssp             CCSEEEECCCGG
T ss_pred             CCCEEEEeCCch
Confidence            589999999853

>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A

Probab=95.46  E-value=0.083  Score=50.12  Aligned_cols=103  Identities=17%  Similarity=0.135  Sum_probs=68.5

Q ss_pred             cccCceEEEEecC--chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHH
Q 017490          174 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFA  247 (370)
Q Consensus       174 ~l~g~tvGIiGlG--~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell  247 (370)
                      .+.|.+|++||=|  ++.++++..+..+|++|....|..-.......   +      ...+...+.+    ...++++.+
T Consensus       145 ~l~gl~va~vGD~~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~---~------~~~~~a~~~G~~~~~~~d~~eav  215 (307)
T 2i6u_A          145 ALRGLRLSYFGDGANNMAHSLLLGGVTAGIHVTVAAPEGFLPDPSVR---A------AAERRAQDTGASVTVTADAHAAA  215 (307)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEECCTTSCCCHHHH---H------HHHHHHHHHTCCEEEESCHHHHH
T ss_pred             CcCCeEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHH---H------HHHHHHHHcCCeEEEEECHHHHh
Confidence            4789999999985  99999999999999999998764322110000   0      0000011111    246899999


Q ss_pred             hcCCEEEEeccC-------Chh-----hhcccCHHHHhcCCCCcEEEEcC
Q 017490          248 SKADVVVCCLSL-------NKQ-----TAGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       248 ~~aDiV~l~lP~-------t~~-----t~~li~~~~l~~mk~gailIN~s  285 (370)
                      +++|+|..-.=.       .++     ..+-++.+.++.+||+++|.-+.
T Consensus       216 ~~aDvvy~~~w~smg~~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~l  265 (307)
T 2i6u_A          216 AGADVLVTDTWTSMGQENDGLDRVKPFRPFQLNSRLLALADSDAIVLHCL  265 (307)
T ss_dssp             TTCSEEEECCSSCTTCTTSCCCSSGGGGGGCBCHHHHHHSCTTCEEEECS
T ss_pred             cCCCEEEecceecCCcccchHHHHHHHhhcCCCHHHHhhcCCCcEEECCC
Confidence            999999884320       011     13456888888899999988774

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=95.46  E-value=0.0083  Score=58.70  Aligned_cols=68  Identities=15%  Similarity=0.078  Sum_probs=47.8

Q ss_pred             cCceEEEEecCc---hhHHHHHHhccCC-CEEE--EEcCCCccccccccccchhhhccccccccccccC-----CCCCHH
Q 017490          176 LGKTVFILGFGN---IGVELAKRLRPFG-VKII--ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-----CHEDIF  244 (370)
Q Consensus       176 ~g~tvGIiGlG~---IG~~vA~~l~~~G-~~V~--~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~  244 (370)
                      +-.+|||||+|.   ||+..+..++..+ +++.  ++|+++....                 ....+++     .+.+++
T Consensus        11 ~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~-----------------~~a~~~g~~~~~~~~~~~   73 (398)
T 3dty_A           11 QPIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGS-----------------AFGEQLGVDSERCYADYL   73 (398)
T ss_dssp             SCEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHH-----------------HHHHHTTCCGGGBCSSHH
T ss_pred             CcceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHH-----------------HHHHHhCCCcceeeCCHH
Confidence            346899999999   9999988776554 6776  4688754321                 1111111     357899


Q ss_pred             HHHhc-------CCEEEEeccCC
Q 017490          245 EFASK-------ADVVVCCLSLN  260 (370)
Q Consensus       245 ell~~-------aDiV~l~lP~t  260 (370)
                      ++++.       .|+|++++|..
T Consensus        74 ~ll~~~~~~~~~vD~V~i~tp~~   96 (398)
T 3dty_A           74 SMFEQEARRADGIQAVSIATPNG   96 (398)
T ss_dssp             HHHHHHTTCTTCCSEEEEESCGG
T ss_pred             HHHhcccccCCCCCEEEECCCcH
Confidence            99975       89999999954

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=95.45  E-value=0.0085  Score=58.03  Aligned_cols=93  Identities=25%  Similarity=0.252  Sum_probs=60.0

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHh----
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS----  248 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~----  248 (370)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++..+......             -.++...  ...++.+.+.    
T Consensus       182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~-------------lGa~~vi~~~~~~~~~~i~~~~~  248 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEE-------------VGATATVDPSAGDVVEAIAGPVG  248 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH-------------HTCSEEECTTSSCHHHHHHSTTS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-------------cCCCEEECCCCcCHHHHHHhhhh
Confidence            58899999999999999999999999 89999887543210000             0011110  1234444443    


Q ss_pred             ----cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          249 ----KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       249 ----~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                          ..|+|+-++.....     -...++.+++|..++.++-
T Consensus       249 ~~~gg~Dvvid~~G~~~~-----~~~~~~~l~~~G~vv~~G~  285 (370)
T 4ej6_A          249 LVPGGVDVVIECAGVAET-----VKQSTRLAKAGGTVVILGV  285 (370)
T ss_dssp             SSTTCEEEEEECSCCHHH-----HHHHHHHEEEEEEEEECSC
T ss_pred             ccCCCCCEEEECCCCHHH-----HHHHHHHhccCCEEEEEec
Confidence                37888888653221     1345667888888888764

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=95.42  E-value=0.004  Score=59.85  Aligned_cols=106  Identities=9%  Similarity=-0.018  Sum_probs=61.4

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEE
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  253 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  253 (370)
                      ..++|+|||.|.||..+|..+...|+  +|..+|......... .  .++......  ..........+.++ +++||+|
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~-a--~DL~~~~~~--~~~~~i~~t~d~~~-~~daDiV   93 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGE-M--MDLEHGSLF--LHTAKIVSGKDYSV-SAGSKLV   93 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHH-H--HHHHHHGGG--SCCSEEEEESSSCS-CSSCSEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHH-H--HHhhhhhhc--ccCCeEEEcCCHHH-hCCCCEE
Confidence            56899999999999999999987777  899999865431100 0  000000000  00000001234444 8999999


Q ss_pred             EEeccCC--h-hhh-ccc--CH-------HHHhcCCCCcEEEEcCCC
Q 017490          254 VCCLSLN--K-QTA-GIV--NK-------SFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       254 ~l~lP~t--~-~t~-~li--~~-------~~l~~mk~gailIN~sRg  287 (370)
                      +++....  | .+| .++  |.       +.+....|++++++++..
T Consensus        94 IitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtNP  140 (330)
T 3ldh_A           94 VITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPEL  140 (330)
T ss_dssp             EECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred             EEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCCc
Confidence            9986532  1 111 122  11       134445899999999854

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=95.42  E-value=0.022  Score=53.66  Aligned_cols=41  Identities=20%  Similarity=0.186  Sum_probs=36.5

Q ss_pred             CcccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          171 TGETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       171 ~~~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      ..+.+.|++|.|.|. |.||+.+++.|...|++|++++|+..
T Consensus        14 ~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~   55 (330)
T 2pzm_A           14 LVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFAT   55 (330)
T ss_dssp             CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSS
T ss_pred             CcccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCc
Confidence            356789999999997 99999999999999999999998643

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*

Probab=95.42  E-value=0.042  Score=55.34  Aligned_cols=121  Identities=20%  Similarity=0.219  Sum_probs=70.2

Q ss_pred             cccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcccccc--ccc--cchhhhccccccccccccCCCCCHHHHH-h
Q 017490          174 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQV--SCQ--SSALAVKNGIIDDLVDEKGCHEDIFEFA-S  248 (370)
Q Consensus       174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~l~ell-~  248 (370)
                      .+.|+||.|-|+|++|+..|+.|..+|++|+++..+......+  .+.  ...+....+.+..... .....+  +++ .
T Consensus       241 ~l~g~tVaVQG~GNVG~~aa~~L~e~GakVVavsDs~G~iyd~~Gid~~~l~~~k~~~g~i~~~~~-a~~~~~--~il~~  317 (501)
T 3mw9_A          241 GFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPK-AKIYEG--SILEV  317 (501)
T ss_dssp             SSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHHSSSTTCTT-SEEECS--CGGGS
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCeecccC-ceeecc--ccccc
Confidence            5899999999999999999999999999998743211110000  000  0000000000000000 000011  333 4


Q ss_pred             cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          249 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       249 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      .|||++-|.     +.+.|+.+....++ -.+++-.+.+++ +.+ ..+.|.+..|.
T Consensus       318 ~~DIliPcA-----~~n~I~~~na~~l~-akiV~EgAN~p~-T~e-A~~iL~~rGIl  366 (501)
T 3mw9_A          318 DCDILIPAA-----SEKQLTKSNAPRVK-AKIIAEGANGPT-TPE-ADKIFLERNIM  366 (501)
T ss_dssp             CCSEEEECS-----SSCCBCTTTGGGCC-CSEEECCSSSCB-CHH-HHHHHHHTTCE
T ss_pred             cceEEeecc-----ccCccCHhHHHHcC-ceEEEeCCCCcC-CHH-HHHHHHHCCCE
Confidence            799887663     45678887777776 457777888874 444 45677777775

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=95.42  E-value=0.0062  Score=58.14  Aligned_cols=122  Identities=15%  Similarity=0.136  Sum_probs=66.6

Q ss_pred             ceEEEEecCchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  255 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  255 (370)
                      .+|+|||.|.+|.+++..+...+.  +|..+|....+.... .  .++.  +.  ...........+..+.++.||+|++
T Consensus         6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~-~--~dl~--~~--~~~~~~~~v~~~~~~a~~~aDvVii   78 (318)
T 1ez4_A            6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGD-A--LDLE--DA--QAFTAPKKIYSGEYSDCKDADLVVI   78 (318)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHH-H--HHHH--GG--GGGSCCCEEEECCGGGGTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHH-H--HHHH--HH--HHhcCCeEEEECCHHHhCCCCEEEE
Confidence            689999999999999999876665  899999864331100 0  0000  00  0000000001134567899999999


Q ss_pred             eccCChhhhc-----cc--CH-------HHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHhCCceEE
Q 017490          256 CLSLNKQTAG-----IV--NK-------SFLSSMKKGSLLVNIARGGLLDYEAIAHY--LECGHLGGL  307 (370)
Q Consensus       256 ~lP~t~~t~~-----li--~~-------~~l~~mk~gailIN~sRg~~vd~~aL~~a--L~~g~i~ga  307 (370)
                      +.+... ..+     ++  |.       +.+....|.+++|+++..-=+....+.+.  +...++.|.
T Consensus        79 ~ag~~~-~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~~k~s~~p~~rviG~  145 (318)
T 1ez4_A           79 TAGAPQ-KPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTYATWKFSGFPKERVIGS  145 (318)
T ss_dssp             CCCC-----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHHcCCCHHHEEec
Confidence            986432 121     11  11       22334478999999854332333333333  333356555

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=95.40  E-value=0.014  Score=56.01  Aligned_cols=82  Identities=16%  Similarity=0.182  Sum_probs=45.4

Q ss_pred             ceEEEEecCchhHHHHHHhccC-CCEEEE-EcCCCccccccccccchhhhcccccccc--ccc--cCCCCCHHHHHhcCC
Q 017490          178 KTVFILGFGNIGVELAKRLRPF-GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDL--VDE--KGCHEDIFEFASKAD  251 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~-G~~V~~-~dr~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~l~ell~~aD  251 (370)
                      .+|||+|+|.||+.+++.+... +++|.+ .|++.+...... ....+..+.......  +..  .....+.++++.++|
T Consensus         3 irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~-~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vD   81 (334)
T 2czc_A            3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRA-KELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVD   81 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHH-HHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCS
T ss_pred             cEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHH-HhcCccccccccccceeccCCceEEcCcHHHhccCCC
Confidence            3799999999999999998764 567655 455422210000 000000000000000  000  012357888888999


Q ss_pred             EEEEeccCC
Q 017490          252 VVVCCLSLN  260 (370)
Q Consensus       252 iV~l~lP~t  260 (370)
                      +|+.|+|..
T Consensus        82 vV~~aTp~~   90 (334)
T 2czc_A           82 IIVDATPGG   90 (334)
T ss_dssp             EEEECCSTT
T ss_pred             EEEECCCcc
Confidence            999999854

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=95.39  E-value=0.0047  Score=53.96  Aligned_cols=36  Identities=28%  Similarity=0.370  Sum_probs=32.5

Q ss_pred             cCceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          176 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       176 ~g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      .|++|.|+| .|.||+.+++.++..|++|++.+++..
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~   74 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDA   74 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHH
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            588999999 699999999999999999999998643

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=95.39  E-value=0.02  Score=57.20  Aligned_cols=97  Identities=19%  Similarity=0.228  Sum_probs=64.5

Q ss_pred             cccccCceEEEEecC----------chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCC
Q 017490          172 GETLLGKTVFILGFG----------NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHE  241 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG----------~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (370)
                      +..+.|++|+|+|+-          .=...+++.|...|++|.+|||...+...  .             ..........
T Consensus       313 ~~~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~--~-------------~~~~~~~~~~  377 (450)
T 3gg2_A          313 KGNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKLLEVGCRVRVYDPVAMKEAQ--K-------------RLGDKVEYTT  377 (450)
T ss_dssp             TTCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSCHHHHH--H-------------HHGGGSEECS
T ss_pred             cccCCCCEEEEEeeeeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCcHHHH--H-------------hcCccceecC
Confidence            356899999999984          23678999999999999999987532100  0             0000000125


Q ss_pred             CHHHHHhcCCEEEEeccCChhhhcccCHHHH-hcCCCCcEEEEcCCC
Q 017490          242 DIFEFASKADVVVCCLSLNKQTAGIVNKSFL-SSMKKGSLLVNIARG  287 (370)
Q Consensus       242 ~l~ell~~aDiV~l~lP~t~~t~~li~~~~l-~~mk~gailIN~sRg  287 (370)
                      ++++.++.+|+|+++++.. +.+. ++-+.+ +.|+ +.+++|+ |+
T Consensus       378 ~~~~~~~~ad~~vi~t~~~-~f~~-~~~~~~~~~~~-~~~i~D~-r~  420 (450)
T 3gg2_A          378 DMYDAVRGAEALFHVTEWK-EFRM-PDWSALSQAMA-ASLVIDG-RN  420 (450)
T ss_dssp             SHHHHTTTCSCEEECSCCG-GGSS-CCHHHHHHHSS-SCEEEES-SC
T ss_pred             CHHHHhcCCCEEEEccCCH-HHhh-cCHHHHHHhcC-CCEEEEC-CC
Confidence            7889999999999998743 3333 354444 4466 5678886 54

>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...

Probab=95.37  E-value=0.038  Score=52.55  Aligned_cols=99  Identities=21%  Similarity=0.220  Sum_probs=66.0

Q ss_pred             cccCceEEEEec---CchhHHHHHHhccC-CCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHH
Q 017490          174 TLLGKTVFILGF---GNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFE  245 (370)
Q Consensus       174 ~l~g~tvGIiGl---G~IG~~vA~~l~~~-G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~e  245 (370)
                      .+.|++|+++|=   |++.++++..+..+ |++|.+..|..-..  +..          . .+.+.+.+    ...++++
T Consensus       151 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~--~~~----------~-~~~~~~~g~~~~~~~d~~e  217 (310)
T 3csu_A          151 RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAM--PQY----------I-LDMLDEKGIAWSLHSSIEE  217 (310)
T ss_dssp             CSSSCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCC--CHH----------H-HHHHHHTTCCEEECSCGGG
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCccccc--CHH----------H-HHHHHHcCCeEEEEcCHHH
Confidence            478999999997   58999999999999 99999987642211  000          0 01111111    2368999


Q ss_pred             HHhcCCEEEEeccCCh-----h-h----hcccCHHHHhcCCCCcEEEEcC
Q 017490          246 FASKADVVVCCLSLNK-----Q-T----AGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       246 ll~~aDiV~l~lP~t~-----~-t----~~li~~~~l~~mk~gailIN~s  285 (370)
                      .++++|+|..-.=-.+     + .    .+-++.+.++.+||+++|.-+.
T Consensus       218 av~~aDvvyt~~~q~er~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~l  267 (310)
T 3csu_A          218 VMAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPL  267 (310)
T ss_dssp             TTTTCSEEEECC-----------------CCBCGGGGTTCCTTCEEECCS
T ss_pred             HhcCCCEEEECCccccccCHHHHHHHhhccCCCHHHHhhcCCCCEEECCC
Confidence            9999999987532111     1 0    2456888888889998888764

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=95.35  E-value=0.01  Score=56.57  Aligned_cols=92  Identities=21%  Similarity=0.207  Sum_probs=61.1

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHh----
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS----  248 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~----  248 (370)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++..+....              .++.+...  ...++.+.+.    
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~--------------~~la~~v~~~~~~~~~~~~~~~~~  229 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFA--------------RPYADRLVNPLEEDLLEVVRRVTG  229 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGG--------------TTTCSEEECTTTSCHHHHHHHHHS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH--------------HHhHHhccCcCccCHHHHHHHhcC
Confidence            78999999999999999999999999 999999875431110              01100000  1124444332    


Q ss_pred             -cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          249 -KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       249 -~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                       ..|+|+-++...+..     ...++.|+++..++.++.
T Consensus       230 ~g~D~vid~~g~~~~~-----~~~~~~l~~~G~iv~~g~  263 (343)
T 2dq4_A          230 SGVEVLLEFSGNEAAI-----HQGLMALIPGGEARILGI  263 (343)
T ss_dssp             SCEEEEEECSCCHHHH-----HHHHHHEEEEEEEEECCC
T ss_pred             CCCCEEEECCCCHHHH-----HHHHHHHhcCCEEEEEec
Confidence             479998887642221     345677888888888864

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=95.34  E-value=0.011  Score=53.13  Aligned_cols=69  Identities=16%  Similarity=0.140  Sum_probs=45.1

Q ss_pred             CceEEEEecCchhHHHHHHh--ccCCCEEE-EEcCCCc-cccc-cccccchhhhccccccccccccCCCCCHHHHHh--c
Q 017490          177 GKTVFILGFGNIGVELAKRL--RPFGVKII-ATKRSWA-SHSQ-VSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--K  249 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l--~~~G~~V~-~~dr~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~  249 (370)
                      .++|+|+|.|++|+.+++.+  ...|+++. ++|.++. ..-. .              .....-. ..++++++++  +
T Consensus        84 ~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~--------------i~GvpV~-~~~dL~~~v~~~~  148 (212)
T 3keo_A           84 TTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTT--------------EDGIPVY-GISTINDHLIDSD  148 (212)
T ss_dssp             CEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBC--------------TTCCBEE-EGGGHHHHC-CCS
T ss_pred             CCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCcee--------------ECCeEEe-CHHHHHHHHHHcC
Confidence            46899999999999999973  45688865 5777655 3100 0              0011111 2457888876  4


Q ss_pred             CCEEEEeccCC
Q 017490          250 ADVVVCCLSLN  260 (370)
Q Consensus       250 aDiV~l~lP~t  260 (370)
                      .|++++++|..
T Consensus       149 Id~vIIAvPs~  159 (212)
T 3keo_A          149 IETAILTVPST  159 (212)
T ss_dssp             CCEEEECSCGG
T ss_pred             CCEEEEecCch
Confidence            89999999853

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=95.34  E-value=0.018  Score=51.30  Aligned_cols=77  Identities=26%  Similarity=0.360  Sum_probs=50.9

Q ss_pred             ccCceEEEEe-cCchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCC
Q 017490          175 LLGKTVFILG-FGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  251 (370)
Q Consensus       175 l~g~tvGIiG-lG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  251 (370)
                      +.++++.|.| .|.||+.+++.|...|+  +|++++|+..+.......  ..       .-........++++++++..|
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~--~~-------~~~~~D~~d~~~~~~~~~~~d   86 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYK--NV-------NQEVVDFEKLDDYASAFQGHD   86 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGG--GC-------EEEECCGGGGGGGGGGGSSCS
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccC--Cc-------eEEecCcCCHHHHHHHhcCCC
Confidence            4678999999 59999999999999999  999999876542110000  00       000000012245667788999


Q ss_pred             EEEEeccCC
Q 017490          252 VVVCCLSLN  260 (370)
Q Consensus       252 iV~l~lP~t  260 (370)
                      +|+.+....
T Consensus        87 ~vi~~ag~~   95 (242)
T 2bka_A           87 VGFCCLGTT   95 (242)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCCcc
Confidence            999887654

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=95.33  E-value=0.024  Score=54.42  Aligned_cols=97  Identities=20%  Similarity=0.246  Sum_probs=60.5

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCE-EEEEcCCCccccccccccchhhhccccccccccccCC---CCCHHHHH----
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC---HEDIFEFA----  247 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~-V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~ell----  247 (370)
                      .|.+|.|+|.|.+|...++.++.+|++ |++.+++..+.....    ++      .+........   ..++.+.+    
T Consensus       179 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~----~l------~~~~~~~~~~~~~~~~~~~~v~~~t  248 (363)
T 3m6i_A          179 LGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAK----EI------CPEVVTHKVERLSAEESAKKIVESF  248 (363)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHH----HH------CTTCEEEECCSCCHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH----Hh------chhcccccccccchHHHHHHHHHHh
Confidence            578999999999999999999999997 999987654421100    00      0000000000   01222222    


Q ss_pred             --hcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCC
Q 017490          248 --SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       248 --~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg  287 (370)
                        ...|+|+-++.....    + ...++.++++..++.++-.
T Consensus       249 ~g~g~Dvvid~~g~~~~----~-~~~~~~l~~~G~iv~~G~~  285 (363)
T 3m6i_A          249 GGIEPAVALECTGVESS----I-AAAIWAVKFGGKVFVIGVG  285 (363)
T ss_dssp             SSCCCSEEEECSCCHHH----H-HHHHHHSCTTCEEEECCCC
T ss_pred             CCCCCCEEEECCCChHH----H-HHHHHHhcCCCEEEEEccC
Confidence              147999998763221    1 3567789999999998753

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=95.33  E-value=0.013  Score=55.43  Aligned_cols=73  Identities=11%  Similarity=0.060  Sum_probs=46.7

Q ss_pred             CcccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccc-cccCCCCCHHHHHh
Q 017490          171 TGETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV-DEKGCHEDIFEFAS  248 (370)
Q Consensus       171 ~~~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~  248 (370)
                      ....+.+++|.|.|. |.||+.+++.|...|++|++.+|.......                ... .......+++++++
T Consensus        13 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~----------------~~~~~Dl~d~~~~~~~~~   76 (347)
T 4id9_A           13 GLVPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSGTGG----------------EEVVGSLEDGQALSDAIM   76 (347)
T ss_dssp             --------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCSSCC----------------SEEESCTTCHHHHHHHHT
T ss_pred             cccccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCCCc----------------cEEecCcCCHHHHHHHHh
Confidence            356788999999997 999999999999999999999987543100                000 01112235677888


Q ss_pred             cCCEEEEeccC
Q 017490          249 KADVVVCCLSL  259 (370)
Q Consensus       249 ~aDiV~l~lP~  259 (370)
                      .+|+|+.+...
T Consensus        77 ~~d~vih~A~~   87 (347)
T 4id9_A           77 GVSAVLHLGAF   87 (347)
T ss_dssp             TCSEEEECCCC
T ss_pred             CCCEEEECCcc
Confidence            99999877543

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=95.33  E-value=0.0088  Score=57.66  Aligned_cols=37  Identities=22%  Similarity=0.316  Sum_probs=33.5

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      .|.+|.|+|.|.||...++.++.+|++|++.+++..+
T Consensus       189 ~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~  225 (363)
T 3uog_A          189 AGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREK  225 (363)
T ss_dssp             TTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchh
Confidence            5889999999999999999999999999999986543

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=95.32  E-value=0.024  Score=52.79  Aligned_cols=39  Identities=28%  Similarity=0.295  Sum_probs=35.1

Q ss_pred             ccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          173 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       173 ~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      .++.||++.|.|. |.||+++|+.|...|++|++.+++..
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~   82 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEE   82 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            4689999999996 88999999999999999999988754

>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}

Probab=95.32  E-value=0.064  Score=50.88  Aligned_cols=110  Identities=16%  Similarity=0.087  Sum_probs=71.0

Q ss_pred             ccc-CceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHH
Q 017490          174 TLL-GKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFA  247 (370)
Q Consensus       174 ~l~-g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell  247 (370)
                      .+. |++|++|| .+++.++++..+..+|++|....|..-.......   ..      ..+.+...+    ...++++.+
T Consensus       142 ~l~~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~---~~------~~~~a~~~g~~~~~~~d~~eav  212 (307)
T 3tpf_A          142 MQNGIAKVAFIGDSNNMCNSWLITAAILGFEISIAMPKNYKISPEIW---EF------AMKQALISGAKISLGYDKFEAL  212 (307)
T ss_dssp             CGGGCCEEEEESCSSHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHH---HH------HHHHHHHHTCEEEEESCHHHHH
T ss_pred             CCCCCCEEEEEcCCCccHHHHHHHHHHcCCEEEEECCCccCCCHHHH---HH------HHHHHHHcCCeEEEEcCHHHHh
Confidence            477 99999999 4678888899999999999998764321100000   00      000000111    236899999


Q ss_pred             hcCCEEEEecc--CCh--h--------hhcccCHHHHhcCCCCcEEEEcC---CCcccCH
Q 017490          248 SKADVVVCCLS--LNK--Q--------TAGIVNKSFLSSMKKGSLLVNIA---RGGLLDY  292 (370)
Q Consensus       248 ~~aDiV~l~lP--~t~--~--------t~~li~~~~l~~mk~gailIN~s---Rg~~vd~  292 (370)
                      +.+|+|..-.=  ...  +        ..+-++.+.++.+|++++|.-+.   ||.=|+.
T Consensus       213 ~~aDvvyt~~w~smg~e~~~~~~~~~~~~y~v~~e~l~~a~~~ai~mH~lPa~Rg~EI~~  272 (307)
T 3tpf_A          213 KDKDVVITDTWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCLPAYRGYEVSE  272 (307)
T ss_dssp             TTCSEEEECCSSCTTGGGGHHHHHHHTGGGCBCHHHHHHSCTTCEEEECSCCCBTTTBCH
T ss_pred             cCCCEEEecCcccCCchhhHHHHHHHhcccccCHHHHHhcCCCcEEECCCCCCCCceeCH
Confidence            99999987540  000  0        13457889999999999998885   5554443

>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}

Probab=95.28  E-value=0.075  Score=50.77  Aligned_cols=103  Identities=17%  Similarity=0.185  Sum_probs=66.7

Q ss_pred             cccCceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHHh
Q 017490          174 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFAS  248 (370)
Q Consensus       174 ~l~g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~  248 (370)
                      .+.|++|++|| .+++.++++..+..+|++|.+..|..-.......   +      .+.+.....+    ...++++.++
T Consensus       154 ~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~---~------~~~~~a~~~g~~v~~~~d~~eav~  224 (323)
T 3gd5_A          154 RLAGLKLAYVGDGNNVAHSLLLGCAKVGMSIAVATPEGFTPDPAVS---A------RASEIAGRTGAEVQILRDPFEAAR  224 (323)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHH---H------HHHHHHHHHTCCEEEESCHHHHHT
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCcccCCHHHH---H------HHHHHHHHcCCeEEEECCHHHHhc
Confidence            37899999999 4788889999998999999998764322110000   0      0000001111    2368999999


Q ss_pred             cCCEEEEeccCC-------h---h--hhcccCHHHHhcCCCCcEEEEcC
Q 017490          249 KADVVVCCLSLN-------K---Q--TAGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       249 ~aDiV~l~lP~t-------~---~--t~~li~~~~l~~mk~gailIN~s  285 (370)
                      ++|+|..-.=-.       +   +  ..+-++.+.++.+|++++|.-+.
T Consensus       225 ~aDvvyt~~wqs~g~~~~~~~~~~~~~~y~vt~ell~~ak~dai~mHcl  273 (323)
T 3gd5_A          225 GAHILYTDVWTSMGQEAETQHRLQLFEQYQINAALLNCAAAEAIVLHCL  273 (323)
T ss_dssp             TCSEEEECCCC---------CCHHHHTTCCBCHHHHHTSCTTCEEEECS
T ss_pred             CCCEEEEeceecCCCcccchHHHHHhhccCCCHHHHhhcCCCcEEECCC
Confidence            999997753111       0   0  12457889999999999998774

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=95.27  E-value=0.032  Score=51.50  Aligned_cols=34  Identities=26%  Similarity=0.256  Sum_probs=31.0

Q ss_pred             CceEEEEec-CchhHHHHHHhccCCCEEEEEcCCC
Q 017490          177 GKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       177 g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      +++|.|+|. |.||+.+++.|...|++|++.+|+.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   36 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKT   36 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCS
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCC
Confidence            578999996 9999999999998899999999875

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=95.25  E-value=0.011  Score=56.77  Aligned_cols=94  Identities=20%  Similarity=0.206  Sum_probs=61.0

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCC---HHHHHhcCCE
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHED---IFEFASKADV  252 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~ell~~aDi  252 (370)
                      .|.+|.|+|.|.||...++.++.+|++|++++++..+.......            -.++....+.+   +.++....|+
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~------------lGa~~vi~~~~~~~~~~~~~g~D~  247 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQD------------LGADDYVIGSDQAKMSELADSLDY  247 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTT------------SCCSCEEETTCHHHHHHSTTTEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHH------------cCCceeeccccHHHHHHhcCCCCE
Confidence            58899999999999999999999999999999875431110000            00111001122   2222335799


Q ss_pred             EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                      |+-++.....     -...++.++++..++.++.
T Consensus       248 vid~~g~~~~-----~~~~~~~l~~~G~iv~~G~  276 (357)
T 2cf5_A          248 VIDTVPVHHA-----LEPYLSLLKLDGKLILMGV  276 (357)
T ss_dssp             EEECCCSCCC-----SHHHHTTEEEEEEEEECSC
T ss_pred             EEECCCChHH-----HHHHHHHhccCCEEEEeCC
Confidence            9988764321     2356778899999998874

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=95.21  E-value=0.031  Score=49.08  Aligned_cols=98  Identities=18%  Similarity=0.163  Sum_probs=57.7

Q ss_pred             ceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCCCCHHHHHhcCCEEEE
Q 017490          178 KTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVVC  255 (370)
Q Consensus       178 ~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~l  255 (370)
                      ++|.|.|. |.||+.+++.|...|++|++++|+..+.......  .        ..... .... .+. +.+..+|+|+.
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~--~--------~~~~~~D~~d-~~~-~~~~~~d~vi~   68 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGA--T--------VATLVKEPLV-LTE-ADLDSVDAVVD   68 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCT--T--------SEEEECCGGG-CCH-HHHTTCSEEEE
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCC--C--------ceEEeccccc-ccH-hhcccCCEEEE
Confidence            36899997 9999999999999999999999875431100000  0        00000 0001 112 67889999998


Q ss_pred             eccCC--hhh--hcc-cCHHHHhcCCC-CcEEEEcCCC
Q 017490          256 CLSLN--KQT--AGI-VNKSFLSSMKK-GSLLVNIARG  287 (370)
Q Consensus       256 ~lP~t--~~t--~~l-i~~~~l~~mk~-gailIN~sRg  287 (370)
                      +....  +..  ..+ .....+..|+. |..+|++|..
T Consensus        69 ~ag~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~  106 (224)
T 3h2s_A           69 ALSVPWGSGRGYLHLDFATHLVSLLRNSDTLAVFILGS  106 (224)
T ss_dssp             CCCCCTTSSCTHHHHHHHHHHHHTCTTCCCEEEEECCG
T ss_pred             CCccCCCcchhhHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence            87542  110  011 12335555543 5678888653

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=95.20  E-value=0.012  Score=59.27  Aligned_cols=127  Identities=13%  Similarity=0.122  Sum_probs=70.3

Q ss_pred             CceEEEEecCch-hHHHHHHhccC-----CCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490          177 GKTVFILGFGNI-GVELAKRLRPF-----GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  250 (370)
Q Consensus       177 g~tvGIiGlG~I-G~~vA~~l~~~-----G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  250 (370)
                      .++|+|||.|.. |.++|..|...     +.+|..||+.........+....+....    ..-.......++++.++.|
T Consensus        28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~----~~~~~I~~t~D~~eal~~A  103 (472)
T 1u8x_X           28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREK----APDIEFAATTDPEEAFTDV  103 (472)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHH----CTTSEEEEESCHHHHHSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccC----CCCCEEEEECCHHHHHcCC
Confidence            468999999998 66576555433     6689999997643111000000000000    0000011225788899999


Q ss_pred             CEEEEeccCCh---hhh--------ccc---------------C-------HHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 017490          251 DVVVCCLSLNK---QTA--------GIV---------------N-------KSFLSSMKKGSLLVNIARGGLLDYEAIAH  297 (370)
Q Consensus       251 DiV~l~lP~t~---~t~--------~li---------------~-------~~~l~~mk~gailIN~sRg~~vd~~aL~~  297 (370)
                      |+|++++|...   .++        +++               +       .+.+....|++++||++..--+-+.++.+
T Consensus       104 D~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~T~~~~k  183 (472)
T 1u8x_X          104 DFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRR  183 (472)
T ss_dssp             SEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHHHH
T ss_pred             CEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHH
Confidence            99999998521   111        111               0       12344457999999998875444455544


Q ss_pred             HHHhCCceEE
Q 017490          298 YLECGHLGGL  307 (370)
Q Consensus       298 aL~~g~i~ga  307 (370)
                      ..-..++.|.
T Consensus       184 ~~p~~rViG~  193 (472)
T 1u8x_X          184 LRPNSKILNI  193 (472)
T ss_dssp             HSTTCCEEEC
T ss_pred             hCCCCCEEEe
Confidence            4433355544

>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A

Probab=95.17  E-value=0.11  Score=49.50  Aligned_cols=103  Identities=17%  Similarity=0.172  Sum_probs=69.2

Q ss_pred             cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHHh
Q 017490          174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFAS  248 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~  248 (370)
                      .+.|.+|++||= +++.++++..+..+|++|....|..-.......   +.      ..+.+.+.+    ...++++.++
T Consensus       152 ~l~gl~va~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~---~~------~~~~a~~~g~~~~~~~d~~eav~  222 (315)
T 1pvv_A          152 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVI---KW------AEQNAAESGGSFELLHDPVKAVK  222 (315)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHH---HH------HHHHHHHHTCEEEEESCHHHHTT
T ss_pred             CcCCcEEEEECCCcchHHHHHHHHHHCCCEEEEECCccccCCHHHH---HH------HHHHHHHcCCeEEEEeCHHHHhC
Confidence            478999999996 899999999999999999998764322110000   00      000001111    2468999999


Q ss_pred             cCCEEEEeccC-------Chh-----hhcccCHHHHhcCCCCcEEEEcC
Q 017490          249 KADVVVCCLSL-------NKQ-----TAGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       249 ~aDiV~l~lP~-------t~~-----t~~li~~~~l~~mk~gailIN~s  285 (370)
                      ++|+|..-.=.       .++     ..+-++.+.++.+||+++|.-+.
T Consensus       223 ~aDvvy~~~w~smg~~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mH~l  271 (315)
T 1pvv_A          223 DADVIYTDVWASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCL  271 (315)
T ss_dssp             TCSEEEECCCCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECS
T ss_pred             CCCEEEEcceeccCcccchHHHHHHHHhcCCCHHHHhhcCCCcEEECCC
Confidence            99999884321       111     13567899999999999998774

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=95.15  E-value=0.036  Score=53.44  Aligned_cols=94  Identities=16%  Similarity=0.097  Sum_probs=53.0

Q ss_pred             ceEEEEe-cCchhHHHHHHhccCC-CEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEE
Q 017490          178 KTVFILG-FGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  255 (370)
Q Consensus       178 ~tvGIiG-lG~IG~~vA~~l~~~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  255 (370)
                      .+|||+| .|.||+.+.+.|.... +++.++.+........ .   +.+   +..... ... ...++++ +..+|+|+.
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~-~---~~~---~~~~g~-~~~-~~~~~~~-~~~vDvV~~   74 (345)
T 2ozp_A            5 KTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPV-H---FVH---PNLRGR-TNL-KFVPPEK-LEPADILVL   74 (345)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBG-G---GTC---GGGTTT-CCC-BCBCGGG-CCCCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchh-H---HhC---chhcCc-ccc-cccchhH-hcCCCEEEE
Confidence            5899999 7999999999987654 4777665432221100 0   000   000000 000 1123334 478999999


Q ss_pred             eccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          256 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       256 ~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                      |+|.... ..+. .   ..++.|+.+|+.|-
T Consensus        75 a~g~~~s-~~~a-~---~~~~aG~~VId~Sa  100 (345)
T 2ozp_A           75 ALPHGVF-AREF-D---RYSALAPVLVDLSA  100 (345)
T ss_dssp             CCCTTHH-HHTH-H---HHHTTCSEEEECSS
T ss_pred             cCCcHHH-HHHH-H---HHHHCCCEEEEcCc
Confidence            9996533 2221 1   12466888999875

>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1

Probab=95.15  E-value=0.097  Score=50.02  Aligned_cols=103  Identities=19%  Similarity=0.197  Sum_probs=68.5

Q ss_pred             cccCceEEEEecC--chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHH
Q 017490          174 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFA  247 (370)
Q Consensus       174 ~l~g~tvGIiGlG--~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell  247 (370)
                      .+.|.+|+++|=|  ++.++++..+..+|++|.+..|..-..  +..    +.   +...+.+.+.+    ...++++.+
T Consensus       164 ~l~gl~va~vGD~~~rva~Sl~~~~~~~G~~v~~~~P~~~~p--~~~----~~---~~~~~~a~~~G~~v~~~~d~~eav  234 (325)
T 1vlv_A          164 RLKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKP--RSD----VF---KRCQEIVKETDGSVSFTSNLEEAL  234 (325)
T ss_dssp             CSTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCC--CHH----HH---HHHHHHHHHHCCEEEEESCHHHHH
T ss_pred             CcCCcEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccC--CHH----HH---HHHHHHHHHcCCeEEEEcCHHHHH
Confidence            4789999999985  999999999999999999987642211  000    00   00000011111    246899999


Q ss_pred             hcCCEEEEeccC-------Chh-----hhcccCHHHHhcC-CCCcEEEEcC
Q 017490          248 SKADVVVCCLSL-------NKQ-----TAGIVNKSFLSSM-KKGSLLVNIA  285 (370)
Q Consensus       248 ~~aDiV~l~lP~-------t~~-----t~~li~~~~l~~m-k~gailIN~s  285 (370)
                      +++|+|..-.=.       .++     ..+-++.+.++.+ ||+++|.-+.
T Consensus       235 ~~aDvvyt~~w~smg~~~~~~~~~~~~~~y~v~~ell~~a~k~dai~mH~L  285 (325)
T 1vlv_A          235 AGADVVYTDVWASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCL  285 (325)
T ss_dssp             TTCSEEEECCCC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             ccCCEEEeccccccccccchHhHHHHHhhcCCCHHHHHhccCCCeEEECCC
Confidence            999999884221       011     2356788999999 9999998875

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=95.12  E-value=0.016  Score=53.11  Aligned_cols=35  Identities=31%  Similarity=0.449  Sum_probs=32.0

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      ++|.|.|.|.||+.+++.|...|++|++.+|+..+
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~   40 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQ   40 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGG
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhh
Confidence            68999999999999999999999999999987543

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=95.11  E-value=0.022  Score=54.33  Aligned_cols=62  Identities=18%  Similarity=0.203  Sum_probs=45.0

Q ss_pred             cCceEEEEecCchhH-HHHHHhccC-CCEEE-EEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhc---
Q 017490          176 LGKTVFILGFGNIGV-ELAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK---  249 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~-~vA~~l~~~-G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---  249 (370)
                      +-.+|||||+|.||+ ..++.++.. +++|. ++|++....                   .+.   .+.+++++++.   
T Consensus        24 ~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~~-------------------g~~---~~~~~~~ll~~~~~   81 (330)
T 4ew6_A           24 SPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTVE-------------------GVN---SYTTIEAMLDAEPS   81 (330)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCCT-------------------TSE---EESSHHHHHHHCTT
T ss_pred             CCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhhc-------------------CCC---ccCCHHHHHhCCCC
Confidence            446899999999998 688888764 77765 566654321                   111   24689999876   


Q ss_pred             CCEEEEeccC
Q 017490          250 ADVVVCCLSL  259 (370)
Q Consensus       250 aDiV~l~lP~  259 (370)
                      .|+|++++|.
T Consensus        82 vD~V~i~tp~   91 (330)
T 4ew6_A           82 IDAVSLCMPP   91 (330)
T ss_dssp             CCEEEECSCH
T ss_pred             CCEEEEeCCc
Confidence            8999999983

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=95.10  E-value=0.011  Score=58.75  Aligned_cols=74  Identities=14%  Similarity=0.054  Sum_probs=46.6

Q ss_pred             ceEEEEecCchhHHHHHHhccC-CCEE-EEEcCCCccccccccccchhhhccccccccccccCCCC----CHHHHHh--c
Q 017490          178 KTVFILGFGNIGVELAKRLRPF-GVKI-IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHE----DIFEFAS--K  249 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~-G~~V-~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~ell~--~  249 (370)
                      .+|||||+|.||+..++.++.. |++| .++|+++.+.......   +. ..     .......+.    +++++++  +
T Consensus        21 ~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~---~~-~~-----g~~~~~~~~~~~~~~~~ll~~~~   91 (444)
T 2ixa_A           21 VRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEI---LK-KN-----GKKPAKVFGNGNDDYKNMLKDKN   91 (444)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHH---HH-HT-----TCCCCEEECSSTTTHHHHTTCTT
T ss_pred             ceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHH---HH-hc-----CCCCCceeccCCCCHHHHhcCCC
Confidence            5899999999999999988764 6776 4678765432110000   00 00     000000234    8999997  5


Q ss_pred             CCEEEEeccCC
Q 017490          250 ADVVVCCLSLN  260 (370)
Q Consensus       250 aDiV~l~lP~t  260 (370)
                      .|+|++++|..
T Consensus        92 vD~V~i~tp~~  102 (444)
T 2ixa_A           92 IDAVFVSSPWE  102 (444)
T ss_dssp             CCEEEECCCGG
T ss_pred             CCEEEEcCCcH
Confidence            89999999954

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=95.08  E-value=0.012  Score=58.00  Aligned_cols=67  Identities=18%  Similarity=0.115  Sum_probs=46.3

Q ss_pred             CceEEEEecCc---hhHHHHHHhccCC-CEEE--EEcCCCccccccccccchhhhccccccccccccC-----CCCCHHH
Q 017490          177 GKTVFILGFGN---IGVELAKRLRPFG-VKII--ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-----CHEDIFE  245 (370)
Q Consensus       177 g~tvGIiGlG~---IG~~vA~~l~~~G-~~V~--~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~e  245 (370)
                      -.+|||||+|.   ||+..+..++..+ +++.  ++|+++.+..                 ....+++     .+.++++
T Consensus        37 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~-----------------~~a~~~g~~~~~~~~~~~~   99 (417)
T 3v5n_A           37 RIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAE-----------------ASGRELGLDPSRVYSDFKE   99 (417)
T ss_dssp             CEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHH-----------------HHHHHHTCCGGGBCSCHHH
T ss_pred             cceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHH-----------------HHHHHcCCCcccccCCHHH
Confidence            35899999999   9999888776655 6765  4687654321                 1111111     3578999


Q ss_pred             HHhc-------CCEEEEeccCC
Q 017490          246 FASK-------ADVVVCCLSLN  260 (370)
Q Consensus       246 ll~~-------aDiV~l~lP~t  260 (370)
                      +++.       .|+|++++|..
T Consensus       100 ll~~~~~~~~~vD~V~I~tp~~  121 (417)
T 3v5n_A          100 MAIREAKLKNGIEAVAIVTPNH  121 (417)
T ss_dssp             HHHHHHHCTTCCSEEEECSCTT
T ss_pred             HHhcccccCCCCcEEEECCCcH
Confidence            9976       89999999954

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=95.02  E-value=0.017  Score=52.84  Aligned_cols=70  Identities=16%  Similarity=0.173  Sum_probs=48.4

Q ss_pred             cCceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccc-cccCCCCCHHHHHhcCCEE
Q 017490          176 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV-DEKGCHEDIFEFASKADVV  253 (370)
Q Consensus       176 ~g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~~aDiV  253 (370)
                      .+|+|.|.| .|.||+.+++.|...|++|++.+|+..+.....             .... ......++++++++..|+|
T Consensus         2 ~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~-------------~~~~~~Dl~d~~~~~~~~~~~D~v   68 (267)
T 3rft_A            2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGPN-------------EECVQCDLADANAVNAMVAGCDGI   68 (267)
T ss_dssp             CEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCCCTT-------------EEEEECCTTCHHHHHHHHTTCSEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCccccCCC-------------CEEEEcCCCCHHHHHHHHcCCCEE
Confidence            478999999 699999999999999999999998765421000             0000 0111224566788899999


Q ss_pred             EEecc
Q 017490          254 VCCLS  258 (370)
Q Consensus       254 ~l~lP  258 (370)
                      +.+.-
T Consensus        69 i~~Ag   73 (267)
T 3rft_A           69 VHLGG   73 (267)
T ss_dssp             EECCS
T ss_pred             EECCC
Confidence            87653

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=95.02  E-value=0.025  Score=53.74  Aligned_cols=102  Identities=17%  Similarity=0.194  Sum_probs=61.0

Q ss_pred             eEEEEec-CchhHHHHHHhccCC--CEEEEEcCCCccccccccccchhhhccccccccccc--cCC---CCCHHHHHhcC
Q 017490          179 TVFILGF-GNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE--KGC---HEDIFEFASKA  250 (370)
Q Consensus       179 tvGIiGl-G~IG~~vA~~l~~~G--~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~l~ell~~a  250 (370)
                      +|+|+|. |.+|..++..|...|  .+|..+|+..... ...    ++.       +....  ...   ..++++.++.|
T Consensus         2 KI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~-~a~----dL~-------~~~~~~~l~~~~~t~d~~~a~~~a   69 (314)
T 1mld_A            2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPG-VAA----DLS-------HIETRATVKGYLGPEQLPDCLKGC   69 (314)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHH-HHH----HHT-------TSSSSCEEEEEESGGGHHHHHTTC
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHH-HHH----HHh-------ccCcCceEEEecCCCCHHHHhCCC
Confidence            7999998 999999999998777  5899999875210 000    000       00000  001   13677889999


Q ss_pred             CEEEEeccCChh---hh-ccc--CH-------HHHhcCCCCcEEEEcCCCcccCHHH
Q 017490          251 DVVVCCLSLNKQ---TA-GIV--NK-------SFLSSMKKGSLLVNIARGGLLDYEA  294 (370)
Q Consensus       251 DiV~l~lP~t~~---t~-~li--~~-------~~l~~mk~gailIN~sRg~~vd~~a  294 (370)
                      |+|+++......   ++ .++  |.       +.+....|++++|+++  .++|.-.
T Consensus        70 DvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~s--NPv~~~~  124 (314)
T 1mld_A           70 DVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS--NPVNSTI  124 (314)
T ss_dssp             SEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS--SCHHHHH
T ss_pred             CEEEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC--CCcchhH
Confidence            999999753211   11 111  11       1223335889999984  4566544

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=95.01  E-value=0.012  Score=56.23  Aligned_cols=91  Identities=22%  Similarity=0.226  Sum_probs=56.1

Q ss_pred             cCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHh-----
Q 017490          176 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFAS-----  248 (370)
Q Consensus       176 ~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~-----  248 (370)
                      .|++|.|+|. |.||...++.++.+|++|++.+++..+......    +         ..+... ...++.+.+.     
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~---------ga~~v~~~~~~~~~~v~~~~~~  225 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKS----V---------GADIVLPLEEGWAKAVREATGG  225 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH----H---------TCSEEEESSTTHHHHHHHHTTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----c---------CCcEEecCchhHHHHHHHHhCC
Confidence            5889999998 999999999999999999999986544211000    0         000000 0023332221     


Q ss_pred             -cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcC
Q 017490          249 -KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       249 -~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~s  285 (370)
                       ..|+|+.++...      .-...+..++++..++.++
T Consensus       226 ~g~Dvvid~~g~~------~~~~~~~~l~~~G~iv~~G  257 (342)
T 4eye_A          226 AGVDMVVDPIGGP------AFDDAVRTLASEGRLLVVG  257 (342)
T ss_dssp             SCEEEEEESCC--------CHHHHHHTEEEEEEEEEC-
T ss_pred             CCceEEEECCchh------HHHHHHHhhcCCCEEEEEE
Confidence             367787776531      1235667778888887775

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=94.98  E-value=0.011  Score=57.04  Aligned_cols=93  Identities=10%  Similarity=-0.022  Sum_probs=58.6

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHh----
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS----  248 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~----  248 (370)
                      .|.+|.|+|.|.||...++.++.+|+ +|++.+++..+......             -.++...  ...++.+.+.    
T Consensus       190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~-------------lGa~~vi~~~~~~~~~~~~~~~~  256 (371)
T 1f8f_A          190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ-------------LGATHVINSKTQDPVAAIKEITD  256 (371)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH-------------HTCSEEEETTTSCHHHHHHHHTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH-------------cCCCEEecCCccCHHHHHHHhcC
Confidence            57899999999999999999999999 69999876543111000             0001000  1123333222    


Q ss_pred             -cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          249 -KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       249 -~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                       ..|+|+-++...+.     -...++.++++..++.++-
T Consensus       257 gg~D~vid~~g~~~~-----~~~~~~~l~~~G~iv~~G~  290 (371)
T 1f8f_A          257 GGVNFALESTGSPEI-----LKQGVDALGILGKIAVVGA  290 (371)
T ss_dssp             SCEEEEEECSCCHHH-----HHHHHHTEEEEEEEEECCC
T ss_pred             CCCcEEEECCCCHHH-----HHHHHHHHhcCCEEEEeCC
Confidence             36888887763221     1346777888888888764

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=94.95  E-value=0.013  Score=59.06  Aligned_cols=67  Identities=12%  Similarity=0.188  Sum_probs=47.8

Q ss_pred             CceEEEEec----CchhHHHHHHhccC--CCEEE-EEcCCCccccccccccchhhhccccccccccccC-----CCCCHH
Q 017490          177 GKTVFILGF----GNIGVELAKRLRPF--GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-----CHEDIF  244 (370)
Q Consensus       177 g~tvGIiGl----G~IG~~vA~~l~~~--G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~  244 (370)
                      -.+|||||+    |.||+..++.++..  +++|. ++|++.....                 .....++     .+.+++
T Consensus        39 ~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~-----------------~~a~~~g~~~~~~~~d~~  101 (479)
T 2nvw_A           39 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSL-----------------QTIEQLQLKHATGFDSLE  101 (479)
T ss_dssp             CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHH-----------------HHHHHTTCTTCEEESCHH
T ss_pred             cCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHH-----------------HHHHHcCCCcceeeCCHH
Confidence            358999999    99999999998875  77864 6787654311                 1111111     257899


Q ss_pred             HHHh--cCCEEEEeccCC
Q 017490          245 EFAS--KADVVVCCLSLN  260 (370)
Q Consensus       245 ell~--~aDiV~l~lP~t  260 (370)
                      ++++  +.|+|++++|..
T Consensus       102 ell~~~~vD~V~I~tp~~  119 (479)
T 2nvw_A          102 SFAQYKDIDMIVVSVKVP  119 (479)
T ss_dssp             HHHHCTTCSEEEECSCHH
T ss_pred             HHhcCCCCCEEEEcCCcH
Confidence            9996  689999999843

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=94.95  E-value=0.01  Score=56.19  Aligned_cols=95  Identities=17%  Similarity=0.137  Sum_probs=59.9

Q ss_pred             cCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHh-----c
Q 017490          176 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----K  249 (370)
Q Consensus       176 ~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~  249 (370)
                      .|++|.|+|. |.||..+++.++..|++|++.+++..+.... .   .+    + .....+ .....++.+.+.     .
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~-~---~~----g-~~~~~d-~~~~~~~~~~~~~~~~~~  214 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYL-K---QI----G-FDAAFN-YKTVNSLEEALKKASPDG  214 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-H---HT----T-CSEEEE-TTSCSCHHHHHHHHCTTC
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-H---hc----C-CcEEEe-cCCHHHHHHHHHHHhCCC
Confidence            5889999998 9999999999999999999999864331100 0   00    0 000000 001134444332     3


Q ss_pred             CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                      .|+|+.+... + +    -...++.+++|..++.++-
T Consensus       215 ~d~vi~~~g~-~-~----~~~~~~~l~~~G~~v~~g~  245 (333)
T 1v3u_A          215 YDCYFDNVGG-E-F----LNTVLSQMKDFGKIAICGA  245 (333)
T ss_dssp             EEEEEESSCH-H-H----HHHHHTTEEEEEEEEECCC
T ss_pred             CeEEEECCCh-H-H----HHHHHHHHhcCCEEEEEec
Confidence            6888887652 1 1    2456778888888888874

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=94.93  E-value=0.052  Score=50.12  Aligned_cols=35  Identities=23%  Similarity=0.328  Sum_probs=31.4

Q ss_pred             CceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          177 GKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       177 g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      .++|.|+|. |.||+.+++.|...|++|++.+|+..
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~   39 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVREST   39 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcc
Confidence            468999996 99999999999999999999998753

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=94.92  E-value=0.073  Score=49.87  Aligned_cols=107  Identities=10%  Similarity=0.045  Sum_probs=72.5

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEE
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  254 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  254 (370)
                      +.|++|.++|.......+++.|...|++|....-......                .....   ...++.+.++++|+|+
T Consensus         5 ~~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~----------------~~g~~---~~~~~~~~~~~~d~ii   65 (300)
T 2rir_A            5 LTGLKIAVIGGDARQLEIIRKLTEQQADIYLVGFDQLDHG----------------FTGAV---KCNIDEIPFQQIDSII   65 (300)
T ss_dssp             CCSCEEEEESBCHHHHHHHHHHHHTTCEEEEESCTTSSCC----------------CTTEE---ECCGGGSCGGGCSEEE
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccc----------------cccce---eccchHHHHhcCCEEE
Confidence            6788999999999999999999999999987642211100                00000   1234566788999998


Q ss_pred             EeccCCh----------hhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          255 CCLSLNK----------QTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       255 l~lP~t~----------~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      .-.|...          .+...++++.++.++++.+++ +   + +|..++++++.+..+.
T Consensus        66 ~~~~~~~~~~~i~s~~a~~~~~~~~~~l~~~~~l~~i~-~---g-~~~~d~~~~~~~~gi~  121 (300)
T 2rir_A           66 LPVSATTGEGVVSTVFSNEEVVLKQDHLDRTPAHCVIF-S---G-ISNAYLENIAAQAKRK  121 (300)
T ss_dssp             CCSSCEETTTEECBSSCSSCEECCHHHHHTSCTTCEEE-E---S-SCCHHHHHHHHHTTCC
T ss_pred             eccccccCCcccccccccCCccchHHHHhhcCCCCEEE-E---e-cCCHHHHHHHHHCCCE
Confidence            7444321          223347889999999998887 3   2 3777877777777776

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=94.90  E-value=0.0057  Score=58.84  Aligned_cols=67  Identities=12%  Similarity=0.196  Sum_probs=44.6

Q ss_pred             CceEEEEecCchhHHHHHHhccC--------CCEE-EEEcCCCccccccccccchhhhccccccccccccC---CCCCHH
Q 017490          177 GKTVFILGFGNIGVELAKRLRPF--------GVKI-IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIF  244 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~--------G~~V-~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~  244 (370)
                      -.+|||||+|.||+..++.++..        +++| .++|++.....                 ....+++   .+.+++
T Consensus         6 klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~-----------------~~a~~~g~~~~~~d~~   68 (390)
T 4h3v_A            6 NLGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVR-----------------AAAGKLGWSTTETDWR   68 (390)
T ss_dssp             EEEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHH-----------------HHHHHHTCSEEESCHH
T ss_pred             cCcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHH-----------------HHHHHcCCCcccCCHH
Confidence            35899999999999877766532        3354 45677654321                 1122222   357899


Q ss_pred             HHHh--cCCEEEEeccCC
Q 017490          245 EFAS--KADVVVCCLSLN  260 (370)
Q Consensus       245 ell~--~aDiV~l~lP~t  260 (370)
                      ++++  +.|+|++++|..
T Consensus        69 ~ll~~~~iDaV~I~tP~~   86 (390)
T 4h3v_A           69 TLLERDDVQLVDVCTPGD   86 (390)
T ss_dssp             HHTTCTTCSEEEECSCGG
T ss_pred             HHhcCCCCCEEEEeCChH
Confidence            9996  579999999943

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=94.89  E-value=0.013  Score=56.07  Aligned_cols=37  Identities=27%  Similarity=0.475  Sum_probs=33.1

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCcc
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  212 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~  212 (370)
                      .|.+|.|+|.|.||...++.++..|+ +|++.+++..+
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~  203 (352)
T 3fpc_A          166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHC  203 (352)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHH
Confidence            58899999999999999999999999 89999986543

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=94.88  E-value=0.012  Score=58.56  Aligned_cols=66  Identities=14%  Similarity=0.124  Sum_probs=47.5

Q ss_pred             ceEEEEec----CchhHHHHHHhccC--CCEE-EEEcCCCccccccccccchhhhccccccccccccC-----CCCCHHH
Q 017490          178 KTVFILGF----GNIGVELAKRLRPF--GVKI-IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-----CHEDIFE  245 (370)
Q Consensus       178 ~tvGIiGl----G~IG~~vA~~l~~~--G~~V-~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~e  245 (370)
                      .+|||||+    |.||+..++.++..  +++| .++|++..+..                 .....++     .+.++++
T Consensus        21 irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~-----------------~~a~~~g~~~~~~~~~~~~   83 (438)
T 3btv_A           21 IRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSI-----------------ATIQRLKLSNATAFPTLES   83 (438)
T ss_dssp             EEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHH-----------------HHHHHTTCTTCEEESSHHH
T ss_pred             CEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHH-----------------HHHHHcCCCcceeeCCHHH
Confidence            58999999    99999999999876  7786 46787654311                 1111111     2468999


Q ss_pred             HHh--cCCEEEEeccCC
Q 017490          246 FAS--KADVVVCCLSLN  260 (370)
Q Consensus       246 ll~--~aDiV~l~lP~t  260 (370)
                      ++.  +.|+|++++|..
T Consensus        84 ll~~~~vD~V~i~tp~~  100 (438)
T 3btv_A           84 FASSSTIDMIVIAIQVA  100 (438)
T ss_dssp             HHHCSSCSEEEECSCHH
T ss_pred             HhcCCCCCEEEEeCCcH
Confidence            997  689999999843

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=94.85  E-value=0.099  Score=51.94  Aligned_cols=87  Identities=14%  Similarity=0.195  Sum_probs=63.6

Q ss_pred             cccCceEEEEecC----------chhHHHHHHhccC-CCEEEEEcCCCccccccccccchhhhccccccccccccCCCCC
Q 017490          174 TLLGKTVFILGFG----------NIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHED  242 (370)
Q Consensus       174 ~l~g~tvGIiGlG----------~IG~~vA~~l~~~-G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (370)
                      .+.|++|+|+|+-          .-...+++.|... |++|.+|||.....                        ....+
T Consensus       312 ~~~~~~v~vlGlafK~~tdD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~------------------------~~~~~  367 (431)
T 3ojo_A          312 ALSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELD------------------------FVEHD  367 (431)
T ss_dssp             HSSCCEEEEECCCSSTTSCCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCT------------------------TBCST
T ss_pred             hcCCCEEEEEeeeeCCCCcchhcChHHHHHHHHHhhcCCEEEEECCCcccc------------------------cccCC
Confidence            4789999999974          2368899999998 99999999864330                        01246


Q ss_pred             HHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490          243 IFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       243 l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~  288 (370)
                      +++.++.+|+|+++++.. +.+. ++.+.++.|+ +.+++|+ |+-
T Consensus       368 ~~~~~~~ad~vvi~t~~~-~f~~-~d~~~~~~~~-~~~i~D~-r~~  409 (431)
T 3ojo_A          368 MSHAVKDASLVLILSDHS-EFKN-LSDSHFDKMK-HKVIFDT-KNV  409 (431)
T ss_dssp             THHHHTTCSEEEECSCCG-GGTS-CCGGGGTTCS-SCEEEES-SCC
T ss_pred             HHHHHhCCCEEEEecCCH-HHhc-cCHHHHHhCC-CCEEEEC-CCC
Confidence            788999999999998743 3333 3445556776 6788886 443

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=94.79  E-value=0.03  Score=52.49  Aligned_cols=101  Identities=13%  Similarity=0.103  Sum_probs=60.2

Q ss_pred             ceEEEEecCchhHHHHHHhcc----CCCEEE-EEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHh--c
Q 017490          178 KTVFILGFGNIGVELAKRLRP----FGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFAS--K  249 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~----~G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~--~  249 (370)
                      .+|||||+|.||+..++.+..    -++++. ++|++...                      ...+ .+.+++++++  +
T Consensus         8 ~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~a----------------------~~~g~~~~~~~ell~~~~   65 (294)
T 1lc0_A            8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELG----------------------SLDEVRQISLEDALRSQE   65 (294)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCC----------------------EETTEEBCCHHHHHHCSS
T ss_pred             ceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHHH----------------------HHcCCCCCCHHHHhcCCC
Confidence            479999999999999988865    366765 56654211                      0111 1368999997  6


Q ss_pred             CCEEEEeccCChhhhcccCHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHhCCce
Q 017490          250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGS-LLVNI-ARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~li~~~~l~~mk~ga-ilIN~-sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      .|+|++++|......  +   ..+.++.|. +++.- ---.+-+.++|+++.++..+.
T Consensus        66 vD~V~i~tp~~~H~~--~---~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~  118 (294)
T 1lc0_A           66 IDVAYICSESSSHED--Y---IRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRV  118 (294)
T ss_dssp             EEEEEECSCGGGHHH--H---HHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCC
T ss_pred             CCEEEEeCCcHhHHH--H---HHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCE
Confidence            899999998432211  1   222344454 44442 111223446677777665543

>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}

Probab=94.77  E-value=0.079  Score=50.92  Aligned_cols=102  Identities=13%  Similarity=0.113  Sum_probs=64.3

Q ss_pred             cccCceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHHh
Q 017490          174 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFAS  248 (370)
Q Consensus       174 ~l~g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~  248 (370)
                      .+.|++|++|| .+++.++++..+..+|++|....|..-.......   +.      +.+.....+    ...+++ .++
T Consensus       172 ~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~---~~------~~~~a~~~g~~v~~~~d~~-av~  241 (339)
T 4a8t_A          172 KLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQ---AK------LAKNCEVSGGSFLVTDDAS-SVE  241 (339)
T ss_dssp             CGGGCEEEEESSCCHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHH---HH------HHHHHHHHCCEEEEECCGG-GGT
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCCHHHH---HH------HHHHHHHcCCEEEEECChh-HHc
Confidence            58999999999 4788899999999999999998764322100000   00      000001111    236788 999


Q ss_pred             cCCEEEEec--cC---C---hh----h--hcccCHHHHhcCCCCcEEEEcC
Q 017490          249 KADVVVCCL--SL---N---KQ----T--AGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       249 ~aDiV~l~l--P~---t---~~----t--~~li~~~~l~~mk~gailIN~s  285 (370)
                      ++|+|..-+  ..   .   .+    .  .+-++.+.++.+|++++|.-+.
T Consensus       242 ~aDvvytd~w~smg~~~~~~~er~~~~~~~y~vt~ell~~ak~dai~mHcL  292 (339)
T 4a8t_A          242 GADFLYTDVWYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCL  292 (339)
T ss_dssp             TCSEEEECCSSCCTTSCCCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECS
T ss_pred             CCCEEEecCcccCCchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCC
Confidence            999998632  10   0   11    1  1456788888888888887764

>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A

Probab=94.76  E-value=0.09  Score=50.17  Aligned_cols=103  Identities=17%  Similarity=0.157  Sum_probs=66.7

Q ss_pred             cccCceEEEEecC-chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHHh
Q 017490          174 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFAS  248 (370)
Q Consensus       174 ~l~g~tvGIiGlG-~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~  248 (370)
                      .+.|.+|++||=| ++.++++..+..+|++|.+..|..-..  +...    .   +.+.+...+.+    ...++++.++
T Consensus       152 ~l~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~--~~~~----~---~~~~~~a~~~G~~~~~~~d~~eav~  222 (321)
T 1oth_A          152 SLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEP--DASV----T---KLAEQYAKENGTKLLLTNDPLEAAH  222 (321)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCC--CHHH----H---HHHHHHHHHHTCCEEEESCHHHHHT
T ss_pred             CcCCcEEEEECCchhhHHHHHHHHHHcCCeEEEECCccccC--CHHH----H---HHHHHHHHHcCCeEEEEECHHHHhc
Confidence            4889999999975 488888888889999999987643221  1000    0   00000000111    2468999999


Q ss_pred             cCCEEEEec----cCChh--------hhcccCHHHHhcCCCCcEEEEcC
Q 017490          249 KADVVVCCL----SLNKQ--------TAGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       249 ~aDiV~l~l----P~t~~--------t~~li~~~~l~~mk~gailIN~s  285 (370)
                      ++|+|..-+    ....+        ..+-++.+.++.+||+++|.-+.
T Consensus       223 ~aDvvy~d~w~s~g~e~~~~~~~~~~~~y~v~~~~l~~a~~dai~mH~l  271 (321)
T 1oth_A          223 GGNVLITDTWISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCL  271 (321)
T ss_dssp             TCSEEEECCSSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECS
T ss_pred             cCCEEEEeccccccchhhhHHHHHhccCceECHHHHhhcCCCCEEECCC
Confidence            999998843    21111        11457888999999999988773

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=94.74  E-value=0.062  Score=50.01  Aligned_cols=75  Identities=27%  Similarity=0.358  Sum_probs=46.7

Q ss_pred             ceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCCCCHHHHHhcCCEEEE
Q 017490          178 KTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVVC  255 (370)
Q Consensus       178 ~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~l  255 (370)
                      ++|.|+|. |.||+.+++.|...|++|++.+|+.........   .+.. .+  .+.+. .....+++.++++.+|+|+.
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~---~l~~-~~--v~~v~~Dl~d~~~l~~a~~~~d~vi~   85 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLD---EFQS-LG--AIIVKGELDEHEKLVELMKKVDVVIS   85 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHH---HHHH-TT--CEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHH---Hhhc-CC--CEEEEecCCCHHHHHHHHcCCCEEEE
Confidence            57999995 999999999999999999999987642100000   0000 00  00000 01122356778889999987


Q ss_pred             ecc
Q 017490          256 CLS  258 (370)
Q Consensus       256 ~lP  258 (370)
                      +.+
T Consensus        86 ~a~   88 (318)
T 2r6j_A           86 ALA   88 (318)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            765

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=94.74  E-value=0.0095  Score=56.56  Aligned_cols=96  Identities=20%  Similarity=0.198  Sum_probs=59.6

Q ss_pred             cCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHh-----c
Q 017490          176 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----K  249 (370)
Q Consensus       176 ~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~  249 (370)
                      .|++|.|+|. |.||...++.++..|++|++.+++..+.......   +    + .....+ . ...++.+.+.     .
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~---~----g-~~~~~~-~-~~~~~~~~~~~~~~~~  218 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEE---L----G-FDGAID-Y-KNEDLAAGLKRECPKG  218 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT---T----C-CSEEEE-T-TTSCHHHHHHHHCTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---c----C-CCEEEE-C-CCHHHHHHHHHhcCCC
Confidence            5889999999 9999999999999999999999865431110000   0    0 000000 0 1123333332     3


Q ss_pred             CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCC
Q 017490          250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg  287 (370)
                      .|+|+.+... +     .-...++.++++..++.++..
T Consensus       219 ~d~vi~~~g~-~-----~~~~~~~~l~~~G~iv~~G~~  250 (336)
T 4b7c_A          219 IDVFFDNVGG-E-----ILDTVLTRIAFKARIVLCGAI  250 (336)
T ss_dssp             EEEEEESSCH-H-----HHHHHHTTEEEEEEEEECCCG
T ss_pred             ceEEEECCCc-c-----hHHHHHHHHhhCCEEEEEeec
Confidence            7888877652 1     124567778888888888654

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=94.74  E-value=0.023  Score=54.92  Aligned_cols=100  Identities=19%  Similarity=0.132  Sum_probs=52.2

Q ss_pred             ceEEEEe-cCchhHHHHHHhccCC-CEEEEEcCCCccccccccccchhhhccc---ccccccccc-CCCCCHHHHHh-cC
Q 017490          178 KTVFILG-FGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNG---IIDDLVDEK-GCHEDIFEFAS-KA  250 (370)
Q Consensus       178 ~tvGIiG-lG~IG~~vA~~l~~~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~l~ell~-~a  250 (370)
                      .+|||+| .|.||+.+++.|.... ++|.++.++.........   +. ++..   .+....... ....+.+++++ .+
T Consensus         9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (354)
T 1ys4_A            9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYK---DA-CYWFQDRDIPENIKDMVVIPTDPKHEEFEDV   84 (354)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHH---HH-SCCCCSSCCCHHHHTCBCEESCTTSGGGTTC
T ss_pred             ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHH---Hh-cccccccccccCceeeEEEeCCHHHHhcCCC
Confidence            4899999 8999999999997654 688776432111000000   00 0000   000000000 01113445556 89


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                      |+|+.|+|.... ..+. ...   ++.|..+|+.+-
T Consensus        85 DvV~~atp~~~~-~~~a-~~~---~~aG~~VId~s~  115 (354)
T 1ys4_A           85 DIVFSALPSDLA-KKFE-PEF---AKEGKLIFSNAS  115 (354)
T ss_dssp             CEEEECCCHHHH-HHHH-HHH---HHTTCEEEECCS
T ss_pred             CEEEECCCchHH-HHHH-HHH---HHCCCEEEECCc
Confidence            999999985322 2111 112   346788888864

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=94.73  E-value=0.013  Score=55.78  Aligned_cols=94  Identities=15%  Similarity=0.226  Sum_probs=58.7

Q ss_pred             cCceEEEEecC-chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHh------
Q 017490          176 LGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS------  248 (370)
Q Consensus       176 ~g~tvGIiGlG-~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~------  248 (370)
                      .|++|.|+|.| .||...++.++..|++|++.+++..+.......        + .+..++ . ...++.+.+.      
T Consensus       144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l--------g-a~~~~~-~-~~~~~~~~~~~~~~~~  212 (340)
T 3gms_A          144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRL--------G-AAYVID-T-STAPLYETVMELTNGI  212 (340)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH--------T-CSEEEE-T-TTSCHHHHHHHHTTTS
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhC--------C-CcEEEe-C-CcccHHHHHHHHhCCC
Confidence            58899999997 899999999999999999999876542110000        0 000000 0 1123333221      


Q ss_pred             cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          249 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       249 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                      ..|+|+.++... .+     ...+..++++..++.++-
T Consensus       213 g~Dvvid~~g~~-~~-----~~~~~~l~~~G~iv~~G~  244 (340)
T 3gms_A          213 GADAAIDSIGGP-DG-----NELAFSLRPNGHFLTIGL  244 (340)
T ss_dssp             CEEEEEESSCHH-HH-----HHHHHTEEEEEEEEECCC
T ss_pred             CCcEEEECCCCh-hH-----HHHHHHhcCCCEEEEEee
Confidence            478888876532 22     234567888888888874

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=94.70  E-value=0.011  Score=56.74  Aligned_cols=94  Identities=22%  Similarity=0.257  Sum_probs=59.1

Q ss_pred             cCceEEEE-ecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHh-----c
Q 017490          176 LGKTVFIL-GFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----K  249 (370)
Q Consensus       176 ~g~tvGIi-GlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~  249 (370)
                      .|++|.|+ |.|.||..+++.++..|++|++.+++..+.......        + .+...+ . ...++.+.+.     .
T Consensus       167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l--------G-a~~~~~-~-~~~~~~~~~~~~~~~g  235 (353)
T 4dup_A          167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERL--------G-AKRGIN-Y-RSEDFAAVIKAETGQG  235 (353)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH--------T-CSEEEE-T-TTSCHHHHHHHHHSSC
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc--------C-CCEEEe-C-CchHHHHHHHHHhCCC
Confidence            58899999 689999999999999999999999875432110000        0 000000 0 1123333332     4


Q ss_pred             CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                      .|+|+.++...      .-...+..++++..++.++.
T Consensus       236 ~Dvvid~~g~~------~~~~~~~~l~~~G~iv~~g~  266 (353)
T 4dup_A          236 VDIILDMIGAA------YFERNIASLAKDGCLSIIAF  266 (353)
T ss_dssp             EEEEEESCCGG------GHHHHHHTEEEEEEEEECCC
T ss_pred             ceEEEECCCHH------HHHHHHHHhccCCEEEEEEe
Confidence            78888876531      12356777888888888864

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=94.68  E-value=0.035  Score=51.19  Aligned_cols=42  Identities=26%  Similarity=0.290  Sum_probs=34.2

Q ss_pred             CCCcccccCceEEEEec-Cc--hhHHHHHHhccCCCEEEEEcCCC
Q 017490          169 VPTGETLLGKTVFILGF-GN--IGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       169 ~~~~~~l~g~tvGIiGl-G~--IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      ...+..+.||++.|.|. |.  ||+++|+.|...|++|++.+|+.
T Consensus        18 ~~~M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   62 (280)
T 3nrc_A           18 GSHMGFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ   62 (280)
T ss_dssp             ----CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             CCcccccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch
Confidence            33456789999999996 44  99999999999999999999875

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=94.66  E-value=0.043  Score=51.17  Aligned_cols=39  Identities=15%  Similarity=0.119  Sum_probs=34.6

Q ss_pred             cccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCC
Q 017490          172 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       172 ~~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      ...+.||++.|.|. |.||+++|+.|...|++|++.+++.
T Consensus        44 ~~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~   83 (294)
T 3r3s_A           44 SGRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPA   83 (294)
T ss_dssp             CSTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGG
T ss_pred             ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            34689999999996 8999999999999999999998763

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=94.65  E-value=0.1  Score=48.69  Aligned_cols=39  Identities=23%  Similarity=0.442  Sum_probs=35.7

Q ss_pred             cccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCC
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      ..+++|++|.|||.|.+|...++.|...|++|.++++..
T Consensus         8 ~~~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A            8 AHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             EECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             EEEcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            457899999999999999999999999999999998754

>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A

Probab=94.63  E-value=0.084  Score=50.68  Aligned_cols=103  Identities=16%  Similarity=0.083  Sum_probs=69.1

Q ss_pred             cccCceEEEEecC--chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHH
Q 017490          174 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFA  247 (370)
Q Consensus       174 ~l~g~tvGIiGlG--~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell  247 (370)
                      .+.|.+|+++|=|  +++++++..+..+|++|....|..-..  +..    +.   +...+...+.+    ...++++.+
T Consensus       152 ~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p--~~~----~~---~~~~~~a~~~G~~v~~~~d~~eav  222 (335)
T 1dxh_A          152 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWP--HDE----FV---AQCKKFAEESGAKLTLTEDPKEAV  222 (335)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSC--CHH----HH---HHHHHHHHHHTCEEEEESCHHHHT
T ss_pred             CcCCeEEEEecCCccchHHHHHHHHHHcCCEEEEECCcccCC--CHH----HH---HHHHHHHHHcCCeEEEEeCHHHHh
Confidence            5889999999986  999999999999999999987643211  000    00   00000011111    246899999


Q ss_pred             hcCCEEEEeccC--------Chh-----hhcccCHHHHhcC-CCCcEEEEcC
Q 017490          248 SKADVVVCCLSL--------NKQ-----TAGIVNKSFLSSM-KKGSLLVNIA  285 (370)
Q Consensus       248 ~~aDiV~l~lP~--------t~~-----t~~li~~~~l~~m-k~gailIN~s  285 (370)
                      +.+|+|..-.=.        ..+     ..+-++.+.++.+ ||+++|.-+.
T Consensus       223 ~~aDvvytd~w~smg~~~e~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcL  274 (335)
T 1dxh_A          223 KGVDFVHTDVWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCL  274 (335)
T ss_dssp             TTCSEEEECCCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECS
T ss_pred             CCCCEEEeCCccccCccchhhHHHHHHhhcceeCHHHHHhccCCCeEEECCC
Confidence            999999884320        011     2356789999999 9999998773

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=94.57  E-value=0.055  Score=50.41  Aligned_cols=34  Identities=21%  Similarity=0.248  Sum_probs=30.8

Q ss_pred             CceEEEEec-CchhHHHHHHhccCCCEEEEEcCCC
Q 017490          177 GKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       177 g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      .++|.|+|. |.||+.+++.|...|++|.+.+|+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   38 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPL   38 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCC
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCc
Confidence            468999995 9999999999999999999999875

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=94.55  E-value=0.026  Score=54.56  Aligned_cols=38  Identities=32%  Similarity=0.467  Sum_probs=33.9

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCC
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  210 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~  210 (370)
                      ..|++++|.|||+|.+|.++|+.|...|. ++..+|+..
T Consensus       114 ~~L~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~  152 (353)
T 3h5n_A          114 DKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQ  152 (353)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCc
Confidence            56889999999999999999999998887 788888754

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=94.53  E-value=0.026  Score=56.22  Aligned_cols=121  Identities=15%  Similarity=0.177  Sum_probs=70.8

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCCCCHHHHHhc-C
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASK-A  250 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~-a  250 (370)
                      .++.||+|.|||+|..|.++|+.|+..|++|.++|............   +.      ...+. ..+  ...++++.. +
T Consensus         5 ~~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~---L~------~~gi~~~~g--~~~~~~~~~~~   73 (451)
T 3lk7_A            5 TTFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQS---LL------EEGIKVVCG--SHPLELLDEDF   73 (451)
T ss_dssp             CTTTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHH---HH------HTTCEEEES--CCCGGGGGSCE
T ss_pred             hhcCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHH---HH------hCCCEEEEC--CChHHhhcCCC
Confidence            35789999999999999999999999999999999864321000000   00      00010 011  122345566 8


Q ss_pred             CEEEEe--ccC-Chhh-----h--cccCH-HHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 017490          251 DVVVCC--LSL-NKQT-----A--GIVNK-SFLSS-MKKGSLLVNIARGGLLDYEAIAHYLECGHL  304 (370)
Q Consensus       251 DiV~l~--lP~-t~~t-----~--~li~~-~~l~~-mk~gailIN~sRg~~vd~~aL~~aL~~g~i  304 (370)
                      |+|++.  +|. +|..     +  .++.+ +.+.. ++...+-|--+.|..-...-+...|+....
T Consensus        74 d~vv~spgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~  139 (451)
T 3lk7_A           74 CYMIKNPGIPYNNPMVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGGQ  139 (451)
T ss_dssp             EEEEECTTSCTTSHHHHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTTC
T ss_pred             CEEEECCcCCCCChhHHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence            988875  332 2221     1  13443 33333 333344444457888777778888876543

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=94.53  E-value=0.17  Score=46.62  Aligned_cols=80  Identities=19%  Similarity=0.233  Sum_probs=47.8

Q ss_pred             CceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCcccccccc-ccchhhhcccccccccc-ccCCCCCHHHHHhcCCEE
Q 017490          177 GKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSC-QSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVV  253 (370)
Q Consensus       177 g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV  253 (370)
                      .++|.|+| .|.||+.+++.|...|++|.+.+|+.....+... ....+. ..+  .+.+. .....+++.++++.+|+|
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~-~~~--~~~~~~D~~d~~~l~~~~~~~d~v   80 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFK-QLG--AKLIEASLDDHQRLVDALKQVDVV   80 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHH-TTT--CEEECCCSSCHHHHHHHHTTCSEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHH-hCC--eEEEeCCCCCHHHHHHHHhCCCEE
Confidence            46899999 5999999999999999999999987532100000 000000 000  00000 011223567788899999


Q ss_pred             EEeccC
Q 017490          254 VCCLSL  259 (370)
Q Consensus       254 ~l~lP~  259 (370)
                      +.+...
T Consensus        81 i~~a~~   86 (313)
T 1qyd_A           81 ISALAG   86 (313)
T ss_dssp             EECCCC
T ss_pred             EECCcc
Confidence            887664

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=94.53  E-value=0.018  Score=55.38  Aligned_cols=102  Identities=17%  Similarity=0.225  Sum_probs=58.9

Q ss_pred             ceEEEEecCchhHHHHHHhccC---------CCEE-EEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHH
Q 017490          178 KTVFILGFGNIGVELAKRLRPF---------GVKI-IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA  247 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~---------G~~V-~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell  247 (370)
                      .+|||||+|.||+.+++.+...         +++| .++|++..+..                 .. .......++++++
T Consensus         4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~-----------------~~-~~~~~~~d~~~ll   65 (332)
T 2ejw_A            4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPR-----------------AI-PQELLRAEPFDLL   65 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCC-----------------SS-CGGGEESSCCCCT
T ss_pred             eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhh-----------------cc-CcccccCCHHHHh
Confidence            4799999999999999988654         4565 45666543310                 00 0000234666777


Q ss_pred             hcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHhC
Q 017490          248 SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL-LDYEAIAHYLECG  302 (370)
Q Consensus       248 ~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~-vd~~aL~~aL~~g  302 (370)
                       +.|+|+.|+|.......+    ..+.++.|.-+|...-..+ -..++|.++.++.
T Consensus        66 -~iDvVve~t~~~~~a~~~----~~~AL~aGKhVVtaNkkpla~~~~eL~~~A~~~  116 (332)
T 2ejw_A           66 -EADLVVEAMGGVEAPLRL----VLPALEAGIPLITANKALLAEAWESLRPFAEEG  116 (332)
T ss_dssp             -TCSEEEECCCCSHHHHHH----HHHHHHTTCCEEECCHHHHHHSHHHHHHHHHTT
T ss_pred             -CCCEEEECCCCcHHHHHH----HHHHHHcCCeEEECCchhHHHHHHHHHHHHHhC
Confidence             899999998854221111    1223455555555322212 2456677776665

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=94.50  E-value=0.02  Score=52.40  Aligned_cols=41  Identities=29%  Similarity=0.302  Sum_probs=36.0

Q ss_pred             cccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          172 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       172 ~~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      ...+.||++.|.|. |.||+++|+.|...|++|++.+|+..+
T Consensus        23 m~~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~   64 (260)
T 3un1_A           23 MMRNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKP   64 (260)
T ss_dssp             HHHTTCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCC
T ss_pred             hhCcCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhh
Confidence            45688999999996 789999999999999999999987554

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}

Probab=94.49  E-value=0.11  Score=51.88  Aligned_cols=127  Identities=13%  Similarity=0.064  Sum_probs=69.2

Q ss_pred             cccccCceEEEEecCchhHHHHHHhccCCCEEE-EEcCCCcccc-ccccc--cc---hhhhc-ccccccccccc-C-CCC
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKII-ATKRSWASHS-QVSCQ--SS---ALAVK-NGIIDDLVDEK-G-CHE  241 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~-~~dr~~~~~~-~~~~~--~~---~~~~~-~~~~~~~~~~~-~-~~~  241 (370)
                      +.+++|+||.|-|+|++|+..|+.|...|++|+ +.|.+..-.. .-.+.  ..   ++... .+.+.+..... + .+.
T Consensus       234 g~~l~g~~VaVQG~GnVG~~aa~~L~e~GakvVavsD~~G~iyd~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~~~a~~v  313 (456)
T 3r3j_A          234 NDNLENKKCLVSGSGNVAQYLVEKLIEKGAIVLTMSDSNGYILEPNGFTKEQLNYIMDIKNNQRLRLKEYLKYSKTAKYF  313 (456)
T ss_dssp             TCCSTTCCEEEECCSHHHHHHHHHHHHHTCCBCCEECSSCEEECTTCCCHHHHHHHHHHHHTSCCCGGGGGGTCSSCEEE
T ss_pred             CCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHHHhcCcchhhhhhcCCCceEe
Confidence            457999999999999999999999999999986 5554311000 00000  00   00000 00001110000 1 111


Q ss_pred             CHHHHH-hcCCEEEEeccCChhhhcccCHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          242 DIFEFA-SKADVVVCCLSLNKQTAGIVNKSFLSSMK--KGSLLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       242 ~l~ell-~~aDiV~l~lP~t~~t~~li~~~~l~~mk--~gailIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      +-++++ ..|||++-|.     +.+.|+.+....++  .=.+++-.+.+++-.+  -.+.|.+..|.
T Consensus       314 ~~~~i~~~~~DI~iPcA-----~~~~I~~~na~~l~~~~ak~V~EgAN~p~T~e--A~~iL~~rGI~  373 (456)
T 3r3j_A          314 ENQKPWNIPCDIAFPCA-----TQNEINENDADLFIQNKCKMIVEGANMPTHIK--ALHKLKQNNII  373 (456)
T ss_dssp             CSCCGGGSCCSEEEECS-----CTTCBCHHHHHHHHHHTCCEEECCSSSCBCTT--HHHHHHTTTCE
T ss_pred             CCccccccCccEEEeCC-----CccchhhHHHHHHHhcCCeEEEecCCCCCCHH--HHHHHHHCCCE
Confidence            122333 3789887663     45678777666652  2356677777775433  34677777665

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=94.45  E-value=0.079  Score=50.69  Aligned_cols=119  Identities=17%  Similarity=0.196  Sum_probs=68.7

Q ss_pred             ceEEEEecCchhHHHHHHhcc---------CCCEEEE-EcCCCccccccccccchhhhccccccccccccCCC--CCHHH
Q 017490          178 KTVFILGFGNIGVELAKRLRP---------FGVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCH--EDIFE  245 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~---------~G~~V~~-~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~e  245 (370)
                      .+|||+|+|.||+.+++.+..         .+.+|.+ +|++...... .+....+       .........+  .++++
T Consensus         3 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~-id~~~~~-------~~~~~~~~~~~~~d~~~   74 (327)
T 3do5_A            3 IKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGD-FSLVEAL-------RMKRETGMLRDDAKAIE   74 (327)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESS-CCHHHHH-------HHHHHHSSCSBCCCHHH
T ss_pred             EEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccc-cCHHHHH-------hhhccCccccCCCCHHH
Confidence            379999999999999998865         4677654 5554322100 0000000       0000000122  38999


Q ss_pred             HHh--cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHhCCce
Q 017490          246 FAS--KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLL-DYEAIAHYLECGHLG  305 (370)
Q Consensus       246 ll~--~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~v-d~~aL~~aL~~g~i~  305 (370)
                      ++.  +.|+|+.++|....+.. .-.-....++.|.-+|...-+.+. ..+.|.++.++....
T Consensus        75 ll~~~~iDvVv~~tp~~~h~~~-a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~~  136 (327)
T 3do5_A           75 VVRSADYDVLIEASVTRVDGGE-GVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVR  136 (327)
T ss_dssp             HHHHSCCSEEEECCCCC----C-HHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTCC
T ss_pred             HhcCCCCCEEEECCCCcccchh-HHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCCc
Confidence            986  58999999985422111 112235567888888877554443 567788888777664

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=94.45  E-value=0.028  Score=56.27  Aligned_cols=36  Identities=25%  Similarity=0.317  Sum_probs=32.7

Q ss_pred             CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      .++|-|+|+|.+|+.+|+.|...|++|++.|.++..
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~   38 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDR   38 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHH
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH
Confidence            568999999999999999999999999999987544

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=94.44  E-value=0.012  Score=56.08  Aligned_cols=37  Identities=22%  Similarity=0.362  Sum_probs=33.5

Q ss_pred             cCceEEEEecCchhHHHHHHhccC--CCEEEEEcCCCcc
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPF--GVKIIATKRSWAS  212 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~--G~~V~~~dr~~~~  212 (370)
                      .|.+|.|+|.|.||...++.++.+  |++|++.+++..+
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~  208 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKH  208 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHH
Confidence            688999999999999999999998  9999999976543

>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A

Probab=94.42  E-value=0.094  Score=50.70  Aligned_cols=102  Identities=12%  Similarity=0.079  Sum_probs=65.2

Q ss_pred             cccCceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHHh
Q 017490          174 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFAS  248 (370)
Q Consensus       174 ~l~g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~  248 (370)
                      .+.|++|++|| .+++.++++..+..+|++|.+..|..-.......   +      .+.+.....+    ...+++ .++
T Consensus       150 ~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~---~------~~~~~a~~~G~~v~~~~d~~-av~  219 (355)
T 4a8p_A          150 KLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQ---A------KLAKNCEVSGGSFLVTDDAS-SVE  219 (355)
T ss_dssp             CGGGCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHH---H------HHHHHHHHHSCEEEEECCGG-GGT
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCCccCCCHHHH---H------HHHHHHHHcCCeEEEECCHH-HHc
Confidence            58899999999 4788899999999999999998764322100000   0      0000001111    236788 999


Q ss_pred             cCCEEEEec----cCC----hh----h--hcccCHHHHhcCCCCcEEEEcC
Q 017490          249 KADVVVCCL----SLN----KQ----T--AGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       249 ~aDiV~l~l----P~t----~~----t--~~li~~~~l~~mk~gailIN~s  285 (370)
                      ++|+|..-+    ...    .+    .  .+-++.+.++.+|++++|.-+.
T Consensus       220 ~aDVVytd~w~smgq~~~~~~er~~~~~~~y~vt~ell~~ak~dai~MHcL  270 (355)
T 4a8p_A          220 GADFLYTDVWYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCL  270 (355)
T ss_dssp             TCSEEEECCSSEETTEECCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECS
T ss_pred             CCCEEEecccccCcchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCC
Confidence            999998632    110    11    1  1456888888888888888775

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=94.42  E-value=0.041  Score=50.46  Aligned_cols=72  Identities=14%  Similarity=0.078  Sum_probs=47.1

Q ss_pred             ceEEEEe-cCchhHHHHHHhccC-CCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCCCCHHHHHhcCCEEE
Q 017490          178 KTVFILG-FGNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVV  254 (370)
Q Consensus       178 ~tvGIiG-lG~IG~~vA~~l~~~-G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~  254 (370)
                      ++|.|.| .|.||+.+++.|... |++|.+.+|+..+.......        +  .+... .....++++++++.+|+|+
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~--------~--v~~~~~D~~d~~~l~~~~~~~d~vi   70 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRG--------K--VSVRQLDYFNQESMVEAFKGMDTVV   70 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBT--------T--BEEEECCTTCHHHHHHHTTTCSEEE
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhC--------C--CEEEEcCCCCHHHHHHHHhCCCEEE
Confidence            3688999 599999999999887 99999999876542110000        0  00000 0112245677889999998


Q ss_pred             EeccC
Q 017490          255 CCLSL  259 (370)
Q Consensus       255 l~lP~  259 (370)
                      .+.+.
T Consensus        71 ~~a~~   75 (289)
T 3e48_A           71 FIPSI   75 (289)
T ss_dssp             ECCCC
T ss_pred             EeCCC
Confidence            87664

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=94.40  E-value=0.078  Score=53.30  Aligned_cols=107  Identities=19%  Similarity=0.213  Sum_probs=68.1

Q ss_pred             cccCceEEEEecC----------chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccc------ccc
Q 017490          174 TLLGKTVFILGFG----------NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV------DEK  237 (370)
Q Consensus       174 ~l~g~tvGIiGlG----------~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~  237 (370)
                      .+.|++|+|+|+-          .-...+++.|...|++|.+|||........ .   .+       ....      ...
T Consensus       332 ~~~~~~v~vlGlafK~~~dd~R~Spa~~i~~~L~~~g~~v~~~DP~~~~~~~~-~---~~-------~~~~~~~~~~~~~  400 (481)
T 2o3j_A          332 TVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHLMEEHAKLSVYDPKVQKSQML-N---DL-------ASVTSAQDVERLI  400 (481)
T ss_dssp             CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHH-H---HH-------HHHSCHHHHHHHE
T ss_pred             ccCCCeEEEEeeeeCCCCCccccChHHHHHHHHHHCCCEEEEECCCCCchhhH-H---HH-------HhhhccccccCce
Confidence            5899999999973          456788999999999999999975321000 0   00       0000      000


Q ss_pred             CCCCCHHHHHhcCCEEEEeccCChhhhcccCHHH-HhcCCCCcEEEEcCCCcccCHHHH
Q 017490          238 GCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSF-LSSMKKGSLLVNIARGGLLDYEAI  295 (370)
Q Consensus       238 ~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~-l~~mk~gailIN~sRg~~vd~~aL  295 (370)
                      ....++.+.++.+|+|++++... +.+. ++.+. .+.|+...+++|+ |+ +.|.+.+
T Consensus       401 ~~~~~~~~~~~~ad~~vi~t~~~-~f~~-~~~~~~~~~~~~~~~i~D~-r~-~~~~~~~  455 (481)
T 2o3j_A          401 TVESDPYAAARGAHAIVVLTEWD-EFVE-LNYSQIHNDMQHPAAIFDG-RL-ILDQKAL  455 (481)
T ss_dssp             EEESSHHHHHTTCSEEEECSCCG-GGTT-SCHHHHHHHSCSSCEEEES-SS-CSCHHHH
T ss_pred             eecCCHHHHHcCCCEEEEcCCcH-Hhhc-cCHHHHHHhcCCCCEEEEC-CC-CCCHHHH
Confidence            01146778899999999998753 3333 35444 4467776688887 44 3565543

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=94.40  E-value=0.014  Score=55.29  Aligned_cols=38  Identities=24%  Similarity=0.336  Sum_probs=33.7

Q ss_pred             ccCceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          175 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       175 l~g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      -.|++|.|+| .|.||...++.++..|++|++.+++..+
T Consensus       147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~  185 (334)
T 3qwb_A          147 KKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEK  185 (334)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            3588999999 8999999999999999999999986543

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=94.40  E-value=0.048  Score=50.88  Aligned_cols=93  Identities=15%  Similarity=0.164  Sum_probs=55.2

Q ss_pred             ceEEEEe-cCchhHHHHHHhc-cCCCEEEE-EcCCCccccccccccchhhhccccccccc--cc-cCCCCCHHHHHhcCC
Q 017490          178 KTVFILG-FGNIGVELAKRLR-PFGVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLV--DE-KGCHEDIFEFASKAD  251 (370)
Q Consensus       178 ~tvGIiG-lG~IG~~vA~~l~-~~G~~V~~-~dr~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~l~ell~~aD  251 (370)
                      .+|+|+| +|.||+.+++.+. .-++++.+ +|++..+.. ..+           +.++.  .. .....++++++.++|
T Consensus         8 ikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~-G~d-----------~gel~g~~~gv~v~~dl~~ll~~~D   75 (272)
T 4f3y_A            8 MKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQL-GQD-----------AGAFLGKQTGVALTDDIERVCAEAD   75 (272)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTT-TSB-----------TTTTTTCCCSCBCBCCHHHHHHHCS
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccc-ccc-----------HHHHhCCCCCceecCCHHHHhcCCC
Confidence            5899999 8999999999876 45788766 687643210 000           00100  11 113478999999999


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCC
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg  287 (370)
                      +|+-+.+.. .+...+.    ..++.|.-+|-...|
T Consensus        76 VVIDfT~p~-a~~~~~~----~al~~G~~vVigTTG  106 (272)
T 4f3y_A           76 YLIDFTLPE-GTLVHLD----AALRHDVKLVIGTTG  106 (272)
T ss_dssp             EEEECSCHH-HHHHHHH----HHHHHTCEEEECCCC
T ss_pred             EEEEcCCHH-HHHHHHH----HHHHcCCCEEEECCC
Confidence            999886522 2222211    123445556655555

>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}

Probab=94.38  E-value=0.16  Score=48.50  Aligned_cols=106  Identities=15%  Similarity=0.185  Sum_probs=67.1

Q ss_pred             ccccCceEEEEecC--chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccc--cC----CCCCHH
Q 017490          173 ETLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE--KG----CHEDIF  244 (370)
Q Consensus       173 ~~l~g~tvGIiGlG--~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~l~  244 (370)
                      ..+.|++|++||=|  ++.++++..+..+|++|.+..|..-...++..    +.  . .+.+...+  .+    ...+++
T Consensus       157 ~~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~p~~~----~~--~-~~~~~~~~~~~g~~v~~~~d~~  229 (328)
T 3grf_A          157 NGFKGIKFAYCGDSMNNVTYDLMRGCALLGMECHVCCPDHKDFKPIKE----VI--D-ECEEIIAKHGTGGSIKIFHDCK  229 (328)
T ss_dssp             TTGGGCCEEEESCCSSHHHHHHHHHHHHHTCEEEEECCSSGGGSCCHH----HH--H-HHHHHHHHHTCCCEEEEESSHH
T ss_pred             cccCCcEEEEeCCCCcchHHHHHHHHHHcCCEEEEECChHhhhCCCHH----HH--H-HHHHHHhhccCCCeEEEEcCHH
Confidence            46899999999965  88889999999999999998764211000000    00  0 00000011  11    246899


Q ss_pred             HHHhcCCEEEEe----ccCCh----h-----hhcccCHHHHhcCCCCcEEEEcC
Q 017490          245 EFASKADVVVCC----LSLNK----Q-----TAGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       245 ell~~aDiV~l~----lP~t~----~-----t~~li~~~~l~~mk~gailIN~s  285 (370)
                      +.++.+|+|..-    +...+    +     ..+-++.+.++.+|++++|.-+.
T Consensus       230 eav~~aDvvytd~W~sm~iq~er~~~~~~~~~~y~vt~~~l~~a~~~ai~mH~l  283 (328)
T 3grf_A          230 KGCEGVDVVYTDSWMSYHITKEQKEARLKVLTPFQVDDAVMAVTSKRSIFMNCL  283 (328)
T ss_dssp             HHHTTCSEEEECCCC--------CCTHHHHHGGGCBCHHHHTTSCTTCEEEECS
T ss_pred             HHhcCCCEEEecCccccCCcHHHHHHHHHHhcCCCCCHHHHHhcCCCCEEECCC
Confidence            999999999863    22011    0     12457899999999999998774

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=94.31  E-value=0.014  Score=56.26  Aligned_cols=94  Identities=18%  Similarity=0.129  Sum_probs=59.8

Q ss_pred             cCceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHh-----c
Q 017490          176 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----K  249 (370)
Q Consensus       176 ~g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~  249 (370)
                      .|++|.|+| .|.||...++.++.+|++|++.+++..+......    +    + .+...+ . ...++.+.+.     .
T Consensus       163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~----~----G-a~~~~~-~-~~~~~~~~~~~~~~~g  231 (362)
T 2c0c_A          163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS----L----G-CDRPIN-Y-KTEPVGTVLKQEYPEG  231 (362)
T ss_dssp             TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----T----T-CSEEEE-T-TTSCHHHHHHHHCTTC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH----c----C-CcEEEe-c-CChhHHHHHHHhcCCC
Confidence            588999999 7999999999999999999999986433110000    0    0 000000 0 1123444332     4


Q ss_pred             CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                      .|+|+.++.. +.     -...++.|+++..++.++.
T Consensus       232 ~D~vid~~g~-~~-----~~~~~~~l~~~G~iv~~g~  262 (362)
T 2c0c_A          232 VDVVYESVGG-AM-----FDLAVDALATKGRLIVIGF  262 (362)
T ss_dssp             EEEEEECSCT-HH-----HHHHHHHEEEEEEEEECCC
T ss_pred             CCEEEECCCH-HH-----HHHHHHHHhcCCEEEEEeC
Confidence            6999888763 11     2356777888888888875

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=94.30  E-value=0.11  Score=52.04  Aligned_cols=108  Identities=19%  Similarity=0.188  Sum_probs=65.8

Q ss_pred             cccCceEEEEecCc----------hhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccc-cccccccccCCCCC
Q 017490          174 TLLGKTVFILGFGN----------IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNG-IIDDLVDEKGCHED  242 (370)
Q Consensus       174 ~l~g~tvGIiGlG~----------IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  242 (370)
                      .+.|++|+|+|+.-          -...+++.|...|++|.+||+........ .   .+..... ..........-..+
T Consensus       326 ~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~  401 (467)
T 2q3e_A          326 TVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIV-V---DLSHPGVSEDDQVSRLVTISKD  401 (467)
T ss_dssp             CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHH-H---HHCC------CHHHHHEEECSS
T ss_pred             ccCCCEEEEEeeccCCCCcchhhChHHHHHHHHHHCCCEEEEEcCccCHHHHh-h---hhccccccccccccCceeecCC
Confidence            48899999999864          67889999999999999999974321000 0   0000000 00000000001136


Q ss_pred             HHHHHhcCCEEEEeccCChhhhcccCHHHH-hcCCCCcEEEEcCCCc
Q 017490          243 IFEFASKADVVVCCLSLNKQTAGIVNKSFL-SSMKKGSLLVNIARGG  288 (370)
Q Consensus       243 l~ell~~aDiV~l~lP~t~~t~~li~~~~l-~~mk~gailIN~sRg~  288 (370)
                      ..+.++.+|+|++++... +.+. ++.+.+ +.|+...+++|+ |+-
T Consensus       402 ~~~~~~~ad~~vi~t~~~-~f~~-~~~~~~~~~~~~~~~i~D~-r~~  445 (467)
T 2q3e_A          402 PYEACDGAHAVVICTEWD-MFKE-LDYERIHKKMLKPAFIFDG-RRV  445 (467)
T ss_dssp             HHHHHTTCSEEEECSCCG-GGGG-SCHHHHHHHSCSSCEEEES-SCT
T ss_pred             HHHHHhCCcEEEEecCCh-hhhc-CCHHHHHHhcCCCCEEEeC-CCc
Confidence            788899999999998753 4443 354444 567776668886 543

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=94.30  E-value=0.041  Score=52.37  Aligned_cols=115  Identities=21%  Similarity=0.158  Sum_probs=67.9

Q ss_pred             CceEEEEecCchhHH-HHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHH-hcCCEEE
Q 017490          177 GKTVFILGFGNIGVE-LAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA-SKADVVV  254 (370)
Q Consensus       177 g~tvGIiGlG~IG~~-vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV~  254 (370)
                      .++|.|||.|.+|.+ +|+.|+..|++|.++|....+.....     +.      ...+.-... .+.+++. .++|+|+
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~-----L~------~~gi~v~~g-~~~~~l~~~~~d~vV   71 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQ-----LE------ALGIDVYEG-FDAAQLDEFKADVYV   71 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHH-----HH------HTTCEEEES-CCGGGGGSCCCSEEE
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHH-----HH------hCCCEEECC-CCHHHcCCCCCCEEE
Confidence            478999999999996 99999999999999998643211000     00      000100001 2334444 4789998


Q ss_pred             Ee--ccC-Chhh-----hc--ccCH-HHHhc-C-CCC-cEEEEcCCCcccCHHHHHHHHHhCC
Q 017490          255 CC--LSL-NKQT-----AG--IVNK-SFLSS-M-KKG-SLLVNIARGGLLDYEAIAHYLECGH  303 (370)
Q Consensus       255 l~--lP~-t~~t-----~~--li~~-~~l~~-m-k~g-ailIN~sRg~~vd~~aL~~aL~~g~  303 (370)
                      ..  +|. +|..     ++  ++.+ +.|.. + +.. .+-|--+.|..-...-+.+.|+...
T Consensus        72 ~Spgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g  134 (326)
T 3eag_A           72 IGNVAKRGMDVVEAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAG  134 (326)
T ss_dssp             ECTTCCTTCHHHHHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTT
T ss_pred             ECCCcCCCCHHHHHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcC
Confidence            75  442 3322     11  3332 33443 3 332 4555556788888888888888654

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=94.30  E-value=0.12  Score=49.83  Aligned_cols=94  Identities=16%  Similarity=0.219  Sum_probs=56.1

Q ss_pred             CceEEEEe-cCchhHHHHHHhccCC-CEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEE
Q 017490          177 GKTVFILG-FGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVV  253 (370)
Q Consensus       177 g~tvGIiG-lG~IG~~vA~~l~~~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV  253 (370)
                      -.+||||| .|.+|+++.++|...- .++..+.........-.    +.+ ++     +..... ...+.++++.++|+|
T Consensus        13 ~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~----~~~-p~-----~~~~l~~~~~~~~~~~~~~Dvv   82 (351)
T 1vkn_A           13 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLE----EIF-PS-----TLENSILSEFDPEKVSKNCDVL   82 (351)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHH----HHC-GG-----GCCCCBCBCCCHHHHHHHCSEE
T ss_pred             eeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChH----HhC-hh-----hccCceEEeCCHHHhhcCCCEE
Confidence            35899998 5999999999998654 36655543211111000    000 00     001111 113456666899999


Q ss_pred             EEeccCChhhhcccCHHHHhcCCCCcEEEEcCCC
Q 017490          254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       254 ~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg  287 (370)
                      ++|+|...+      ++....+ .|+.+|+.|.-
T Consensus        83 f~alp~~~s------~~~~~~~-~g~~VIDlSsd  109 (351)
T 1vkn_A           83 FTALPAGAS------YDLVREL-KGVKIIDLGAD  109 (351)
T ss_dssp             EECCSTTHH------HHHHTTC-CSCEEEESSST
T ss_pred             EECCCcHHH------HHHHHHh-CCCEEEECChh
Confidence            999996532      3445555 79999999853

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=94.29  E-value=0.012  Score=55.80  Aligned_cols=121  Identities=14%  Similarity=0.090  Sum_probs=65.5

Q ss_pred             ceEEEEecCchhHHHHHHhccCC--CEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVV  254 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G--~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~  254 (370)
                      ++|+|||.|.+|.+++..+...+  -+|..+|...++.... .  .++.  +.  ........ ...+ .+.++.||+|+
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~-a--~dl~--~~--~~~~~~~~v~~~~-~~a~~~aD~Vi   72 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAH-A--EDIL--HA--TPFAHPVWVWAGS-YGDLEGARAVV   72 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHH-H--HHHH--TT--GGGSCCCEEEECC-GGGGTTEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHH-H--HHHH--Hh--HhhcCCeEEEECC-HHHhCCCCEEE
Confidence            47999999999999999987655  4899999875331100 0  0000  00  00000000 1123 56789999999


Q ss_pred             EeccCChhhhcc-------cCHH-------HHhcCCCCcEEEEcCCCcccCHHHHHHH--HHhCCceEE
Q 017490          255 CCLSLNKQTAGI-------VNKS-------FLSSMKKGSLLVNIARGGLLDYEAIAHY--LECGHLGGL  307 (370)
Q Consensus       255 l~lP~t~~t~~l-------i~~~-------~l~~mk~gailIN~sRg~~vd~~aL~~a--L~~g~i~ga  307 (370)
                      ++.+... ..++       .|..       .+....|.+++|+++..-=+....+.+.  +...++.|.
T Consensus        73 i~ag~~~-~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~~k~s~~p~~rviG~  140 (310)
T 2xxj_A           73 LAAGVAQ-RPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQVAYALSGLPPGRVVGS  140 (310)
T ss_dssp             ECCCCCC-CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHHTCCGGGEEEC
T ss_pred             ECCCCCC-CCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecCchHHHHHHHHHHcCCCHHHEEec
Confidence            9976432 1121       1111       2233378999999854332333333333  223355544

>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*

Probab=94.29  E-value=0.082  Score=50.69  Aligned_cols=103  Identities=14%  Similarity=0.111  Sum_probs=69.0

Q ss_pred             cccCceEEEEecC--chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHH
Q 017490          174 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFA  247 (370)
Q Consensus       174 ~l~g~tvGIiGlG--~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell  247 (370)
                      .+.|.+|++||=|  +++++++..+..+|++|.+..|..-..  +..    +.   +...+.+.+.+    ...++++.+
T Consensus       152 ~l~gl~ia~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p--~~~----~~---~~~~~~a~~~G~~v~~~~d~~eav  222 (333)
T 1duv_G          152 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWP--EAA----LV---TECRALAQQNGGNITLTEDVAKGV  222 (333)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCC--CHH----HH---HHHHHHHHHTTCEEEEESCHHHHH
T ss_pred             CCCCcEEEEECCCccchHHHHHHHHHHcCCEEEEECCcccCC--CHH----HH---HHHHHHHHHcCCeEEEEECHHHHh
Confidence            5889999999985  999999999999999999987642211  000    00   00000011112    247899999


Q ss_pred             hcCCEEEEeccC-----C---hh-----hhcccCHHHHhcC-CCCcEEEEcC
Q 017490          248 SKADVVVCCLSL-----N---KQ-----TAGIVNKSFLSSM-KKGSLLVNIA  285 (370)
Q Consensus       248 ~~aDiV~l~lP~-----t---~~-----t~~li~~~~l~~m-k~gailIN~s  285 (370)
                      +.+|+|..-.=.     .   .+     ..+-++.+.++.+ ||+++|.-+.
T Consensus       223 ~~aDvvytd~w~smg~~~~~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcL  274 (333)
T 1duv_G          223 EGADFIYTDVWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCL  274 (333)
T ss_dssp             TTCSEEEECCSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             CCCCEEEeCCccccCccccchHHHHHHhhccccCHHHHHhccCCCcEEECCC
Confidence            999999884320     0   11     1356789999999 9999998774

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=94.29  E-value=0.018  Score=52.74  Aligned_cols=38  Identities=24%  Similarity=0.231  Sum_probs=34.0

Q ss_pred             ccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCC
Q 017490          173 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       173 ~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      .++.||++.|.|. |.||+++|+.|...|++|++.++..
T Consensus         7 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~   45 (262)
T 3ksu_A            7 HDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQA   45 (262)
T ss_dssp             SCCTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCG
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCc
Confidence            5689999999996 8999999999999999999987653

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=94.28  E-value=0.043  Score=52.91  Aligned_cols=30  Identities=27%  Similarity=0.511  Sum_probs=25.1

Q ss_pred             ceEEEEecCchhHHHHHHhccC-CCEEEEEc
Q 017490          178 KTVFILGFGNIGVELAKRLRPF-GVKIIATK  207 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~-G~~V~~~d  207 (370)
                      .+|||+|+|.||+.+++.+... +++|.+++
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~evvaV~   33 (343)
T 2yyy_A            3 AKVLINGYGSIGKRVADAVSMQDDMEVIGVT   33 (343)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSSEEEEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCceEEEEe
Confidence            3799999999999999998754 68877664

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=94.27  E-value=0.038  Score=52.61  Aligned_cols=93  Identities=13%  Similarity=0.107  Sum_probs=57.6

Q ss_pred             cCceEEEEecCchhHHHHHHhccC-CCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHH----HHh-
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFE----FAS-  248 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~-G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~e----ll~-  248 (370)
                      .|.+|.|+|.|.+|...++.++.+ |.+|++.+++..+......             -.++... ...++.+    +.. 
T Consensus       171 ~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~-------------lGa~~~i~~~~~~~~~v~~~t~g  237 (345)
T 3jv7_A          171 PGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE-------------VGADAAVKSGAGAADAIRELTGG  237 (345)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH-------------TTCSEEEECSTTHHHHHHHHHGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH-------------cCCCEEEcCCCcHHHHHHHHhCC
Confidence            588999999999999999999987 7899999887544211000             0011100 1112222    222 


Q ss_pred             -cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          249 -KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       249 -~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                       ..|+|+-++......     ...++.++++..++.++-
T Consensus       238 ~g~d~v~d~~G~~~~~-----~~~~~~l~~~G~iv~~G~  271 (345)
T 3jv7_A          238 QGATAVFDFVGAQSTI-----DTAQQVVAVDGHISVVGI  271 (345)
T ss_dssp             GCEEEEEESSCCHHHH-----HHHHHHEEEEEEEEECSC
T ss_pred             CCCeEEEECCCCHHHH-----HHHHHHHhcCCEEEEECC
Confidence             579999887743221     245566777777777763

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=94.25  E-value=0.033  Score=49.54  Aligned_cols=74  Identities=19%  Similarity=0.096  Sum_probs=48.8

Q ss_pred             ccCceEEEEe-cCchhHHHHHHhccC--CCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCCCCHHHHHhcC
Q 017490          175 LLGKTVFILG-FGNIGVELAKRLRPF--GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKA  250 (370)
Q Consensus       175 l~g~tvGIiG-lG~IG~~vA~~l~~~--G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~a  250 (370)
                      ..+++|.|.| .|.||+.+++.|...  |++|++.+|+..+...       +  ..+  ..... .....++++++++.+
T Consensus         2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~-------~--~~~--~~~~~~D~~d~~~~~~~~~~~   70 (253)
T 1xq6_A            2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEK-------I--GGE--ADVFIGDITDADSINPAFQGI   70 (253)
T ss_dssp             CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHH-------T--TCC--TTEEECCTTSHHHHHHHHTTC
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhh-------c--CCC--eeEEEecCCCHHHHHHHHcCC
Confidence            3578999999 599999999999988  8999999987432100       0  000  00000 001223567788899


Q ss_pred             CEEEEeccC
Q 017490          251 DVVVCCLSL  259 (370)
Q Consensus       251 DiV~l~lP~  259 (370)
                      |+|+.+...
T Consensus        71 d~vi~~a~~   79 (253)
T 1xq6_A           71 DALVILTSA   79 (253)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEEeccc
Confidence            999887653

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=94.24  E-value=0.021  Score=54.79  Aligned_cols=106  Identities=14%  Similarity=0.099  Sum_probs=60.3

Q ss_pred             cCceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccc-cc-cCCCCCHHHHHhcCCE
Q 017490          176 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV-DE-KGCHEDIFEFASKADV  252 (370)
Q Consensus       176 ~g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~l~ell~~aDi  252 (370)
                      .+++|.|.| .|.||+.+++.|...|++|++.+|+..+....     .+....+  .+.. .. ....+++.++++.+|+
T Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~-----~l~~~~~--v~~v~~D~l~d~~~l~~~~~~~d~   76 (352)
T 1xgk_A            4 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAE-----ELQAIPN--VTLFQGPLLNNVPLMDTLFEGAHL   76 (352)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHH-----HHHTSTT--EEEEESCCTTCHHHHHHHHTTCSE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHH-----HHhhcCC--cEEEECCccCCHHHHHHHHhcCCE
Confidence            367899999 49999999999998999999999875431000     0000000  0000 00 1112346677889999


Q ss_pred             EEEeccCChhhhcccCHHHHhcCCC-C--cEEEEcCCCc
Q 017490          253 VVCCLSLNKQTAGIVNKSFLSSMKK-G--SLLVNIARGG  288 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~~l~~mk~-g--ailIN~sRg~  288 (370)
                      |+.+...............+..++. |  ..||++|...
T Consensus        77 Vi~~a~~~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~~  115 (352)
T 1xgk_A           77 AFINTTSQAGDEIAIGKDLADAAKRAGTIQHYIYSSMPD  115 (352)
T ss_dssp             EEECCCSTTSCHHHHHHHHHHHHHHHSCCSEEEEEECCC
T ss_pred             EEEcCCCCCcHHHHHHHHHHHHHHHcCCccEEEEeCCcc
Confidence            9876653211111112333333322 3  4788888754

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=94.23  E-value=0.036  Score=52.75  Aligned_cols=67  Identities=13%  Similarity=0.104  Sum_probs=44.8

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEE-EEcCCCc-cccccccccchhhhccccccccccccC----CCCCHHHHHhc--
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKII-ATKRSWA-SHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASK--  249 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~-~~dr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~--  249 (370)
                      .+|||||+|.+|+..++.+ .-+++|. ++|++.. .....              .+...+++    .+.++++++++  
T Consensus         3 ~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~ll~~~~   67 (337)
T 3ip3_A            3 LKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKL--------------EKAISEMNIKPKKYNNWWEMLEKEK   67 (337)
T ss_dssp             EEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHH--------------HHHHHTTTCCCEECSSHHHHHHHHC
T ss_pred             eEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHH--------------HHHHHHcCCCCcccCCHHHHhcCCC
Confidence            4799999999999888777 6678876 4777652 21100              00111111    35789999974  


Q ss_pred             CCEEEEeccC
Q 017490          250 ADVVVCCLSL  259 (370)
Q Consensus       250 aDiV~l~lP~  259 (370)
                      .|+|++++|.
T Consensus        68 vD~V~I~tp~   77 (337)
T 3ip3_A           68 PDILVINTVF   77 (337)
T ss_dssp             CSEEEECSSH
T ss_pred             CCEEEEeCCc
Confidence            8999999884

>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}

Probab=94.22  E-value=0.12  Score=49.89  Aligned_cols=105  Identities=16%  Similarity=0.127  Sum_probs=64.4

Q ss_pred             cccccCceEEEEecC-chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccc--c-cC---CCCCHH
Q 017490          172 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD--E-KG---CHEDIF  244 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG-~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~---~~~~l~  244 (370)
                      ...+.|++|++||=+ ++.++++..+..+|++|.+..|..-..+.  .    +.   +.+.+...  + .+   ...+++
T Consensus       183 ~~~l~glkva~vGD~~nva~Sl~~~l~~lG~~v~~~~P~~~~~~~--~----i~---~~~~~~a~~~~~g~~~~~~~d~~  253 (353)
T 3sds_A          183 SLGLEGLKIAWVGDANNVLFDLAIAATKMGVNVAVATPRGYEIPS--H----IV---ELIQKAREGVQSPGNLTQTTVPE  253 (353)
T ss_dssp             CCSCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCH--H----HH---HHHHHHHTTCSSCCCEEEESCHH
T ss_pred             ccccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEECCcccCCCH--H----HH---HHHHHhhhhccCCCeEEEECCHH
Confidence            345899999999954 67788888888999999998764321100  0    00   00000000  0 11   236899


Q ss_pred             HHHhcCCEEEEec--cCChh----------hhcccCHHHHhc--CCCCcEEEEcC
Q 017490          245 EFASKADVVVCCL--SLNKQ----------TAGIVNKSFLSS--MKKGSLLVNIA  285 (370)
Q Consensus       245 ell~~aDiV~l~l--P~t~~----------t~~li~~~~l~~--mk~gailIN~s  285 (370)
                      +.++++|+|..-.  +...+          ..+-++.+.++.  +|++++|.-+.
T Consensus       254 eav~~aDVvytd~w~smg~E~~~~~r~~~~~~y~vt~ell~~~~ak~~ai~MHcL  308 (353)
T 3sds_A          254 VAVKDADVIVTDTWISMGQETEKIKRLEAFKDFKVTSELAKRGGAKENWKFMHCL  308 (353)
T ss_dssp             HHTTTCSEEEECCC--------CHHHHHHTTTCCBCHHHHHHHTCCTTCEEEECS
T ss_pred             HHhcCCCEEEeCCccCCchhhHHHHHHHHhhCceecHHHHhhcccCCCcEEECCC
Confidence            9999999998642  21111          124568888887  78888887663

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=94.21  E-value=0.014  Score=55.23  Aligned_cols=94  Identities=22%  Similarity=0.290  Sum_probs=58.5

Q ss_pred             cCceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHH------h
Q 017490          176 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA------S  248 (370)
Q Consensus       176 ~g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell------~  248 (370)
                      .|++|.|+| .|.||...++.++..|++|++.+++..+......    +    + .+...+ . ...++.+.+      .
T Consensus       140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~----G-a~~~~~-~-~~~~~~~~~~~~~~~~  208 (325)
T 3jyn_A          140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKA----L----G-AWETID-Y-SHEDVAKRVLELTDGK  208 (325)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH----H----T-CSEEEE-T-TTSCHHHHHHHHTTTC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----c----C-CCEEEe-C-CCccHHHHHHHHhCCC
Confidence            588999999 7999999999999999999999986543111000    0    0 000000 0 112333222      1


Q ss_pred             cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          249 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       249 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                      ..|+|+.++.. +    . -...++.++++..++.++.
T Consensus       209 g~Dvvid~~g~-~----~-~~~~~~~l~~~G~iv~~g~  240 (325)
T 3jyn_A          209 KCPVVYDGVGQ-D----T-WLTSLDSVAPRGLVVSFGN  240 (325)
T ss_dssp             CEEEEEESSCG-G----G-HHHHHTTEEEEEEEEECCC
T ss_pred             CceEEEECCCh-H----H-HHHHHHHhcCCCEEEEEec
Confidence            47888877653 1    1 1356777888888888864

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=94.17  E-value=0.021  Score=54.13  Aligned_cols=101  Identities=20%  Similarity=0.248  Sum_probs=57.2

Q ss_pred             eEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEEEe
Q 017490          179 TVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCC  256 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~  256 (370)
                      +|+|||.|.+|..+|..+...|+ +|..+|+...+... ..  .++.....  ........ ...+. +.++.||+|+++
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g-~~--~dl~~~~~--~~~~~~~i~~t~d~-~a~~~aD~Vi~~   74 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQG-EA--LDLAHAAA--ELGVDIRISGSNSY-EDMRGSDIVLVT   74 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHH-HH--HHHHHHHH--HHTCCCCEEEESCG-GGGTTCSEEEEC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHH-HH--HHHHHhhh--hcCCCeEEEECCCH-HHhCCCCEEEEe
Confidence            58999999999999998876676 69999987543211 00  00000000  00000000 11344 678999999999


Q ss_pred             ccCChhhhcc-----c--C----H---HHHhcCCCCcEEEEcCC
Q 017490          257 LSLNKQTAGI-----V--N----K---SFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       257 lP~t~~t~~l-----i--~----~---~~l~~mk~gailIN~sR  286 (370)
                      .+... ..++     +  |    +   +.+....|++++|+++.
T Consensus        75 ag~~~-k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN  117 (308)
T 2d4a_B           75 AGIGR-KPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTN  117 (308)
T ss_dssp             CSCCC-CSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             CCCCC-CCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            76432 1121     0  1    1   12333358999999855

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=94.14  E-value=0.034  Score=52.88  Aligned_cols=64  Identities=22%  Similarity=0.188  Sum_probs=42.0

Q ss_pred             ceEEEEecCchhHHHHHHhc--cCCCEE-EEEcCCCcc-ccccccccchhhhccccccccccccC-C--CCCHHHHHh--
Q 017490          178 KTVFILGFGNIGVELAKRLR--PFGVKI-IATKRSWAS-HSQVSCQSSALAVKNGIIDDLVDEKG-C--HEDIFEFAS--  248 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~--~~G~~V-~~~dr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~l~ell~--  248 (370)
                      .+|||||+|.||+.+++.+.  .-++++ .++|+++.+ ..                 ......+ .  ..+.+++++  
T Consensus         5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~-----------------~~a~~~g~~~~~~~~e~ll~~~   67 (312)
T 1nvm_B            5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGL-----------------ARAQRMGVTTTYAGVEGLIKLP   67 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHH-----------------HHHHHTTCCEESSHHHHHHHSG
T ss_pred             CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHH-----------------HHHHHcCCCcccCCHHHHHhcc
Confidence            58999999999999999884  346664 467776443 10                 1111122 1  245667754  


Q ss_pred             ---cCCEEEEecc
Q 017490          249 ---KADVVVCCLS  258 (370)
Q Consensus       249 ---~aDiV~l~lP  258 (370)
                         +.|+|+.++|
T Consensus        68 ~~~~iDvV~~atp   80 (312)
T 1nvm_B           68 EFADIDFVFDATS   80 (312)
T ss_dssp             GGGGEEEEEECSC
T ss_pred             CCCCCcEEEECCC
Confidence               5799999998

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=94.10  E-value=0.068  Score=50.34  Aligned_cols=105  Identities=15%  Similarity=0.136  Sum_probs=64.0

Q ss_pred             ceEEEEec-CchhHHHHHHhccCCCE-EEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHh--cCCEE
Q 017490          178 KTVFILGF-GNIGVELAKRLRPFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADVV  253 (370)
Q Consensus       178 ~tvGIiGl-G~IG~~vA~~l~~~G~~-V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV  253 (370)
                      .++.|+|. |.+|+.+++.+...|++ |..+++.....                  + ......+.+++++..  ..|++
T Consensus        14 ~~v~V~Gasg~~G~~~~~~l~~~g~~~V~~VnP~~~g~------------------~-i~G~~vy~sl~el~~~~~~Dv~   74 (294)
T 2yv1_A           14 TKAIVQGITGRQGSFHTKKMLECGTKIVGGVTPGKGGQ------------------N-VHGVPVFDTVKEAVKETDANAS   74 (294)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCEEEEECTTCTTC------------------E-ETTEEEESSHHHHHHHHCCCEE
T ss_pred             CEEEEECCCCCHHHHHHHHHHhCCCeEEEEeCCCCCCc------------------e-ECCEeeeCCHHHHhhcCCCCEE
Confidence            35778898 99999999999988997 33555432110                  0 000013568999888  89999


Q ss_pred             EEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc-ccCHHHHHHHHHhCCce
Q 017490          254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG-LLDYEAIAHYLECGHLG  305 (370)
Q Consensus       254 ~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~-~vd~~aL~~aL~~g~i~  305 (370)
                      ++++|.. .+...+. +.++. .... +|..+.|= .-+++.|.++.++..+.
T Consensus        75 ii~vp~~-~~~~~v~-ea~~~-Gi~~-vVi~t~G~~~~~~~~l~~~A~~~gi~  123 (294)
T 2yv1_A           75 VIFVPAP-FAKDAVF-EAIDA-GIEL-IVVITEHIPVHDTMEFVNYAEDVGVK  123 (294)
T ss_dssp             EECCCHH-HHHHHHH-HHHHT-TCSE-EEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred             EEccCHH-HHHHHHH-HHHHC-CCCE-EEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            9999843 3333332 22222 2222 44444442 23456888888877664

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=94.10  E-value=0.1  Score=51.62  Aligned_cols=127  Identities=19%  Similarity=0.127  Sum_probs=71.4

Q ss_pred             cccccCceEEEEecCchhHHHHHHhccCCCEEE-EEcCCCccc-cc--cccccchhhhcccc--cccccccc--CCCCCH
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKII-ATKRSWASH-SQ--VSCQSSALAVKNGI--IDDLVDEK--GCHEDI  243 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~-~~dr~~~~~-~~--~~~~~~~~~~~~~~--~~~~~~~~--~~~~~l  243 (370)
                      +.++.|++|.|.|+|++|+.+|+.|..+|++|+ +.|.+..-. +.  ..+....+....+.  +.+.....  ....+.
T Consensus       205 g~~l~gk~vaVqG~GnVG~~aa~~L~e~GakVVavsD~~G~i~dp~GlD~~~l~~~k~~~g~~~v~~y~~~~~~~~~~~~  284 (421)
T 1v9l_A          205 WGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNP  284 (421)
T ss_dssp             HSCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSST
T ss_pred             CCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEECCCcEEECCCCCCHHHHHHHHHhhCCccccccccccCceEeCCc
Confidence            457999999999999999999999999999998 444421100 00  00000000000000  00000000  011022


Q ss_pred             HHHHh-cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceE
Q 017490          244 FEFAS-KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGG  306 (370)
Q Consensus       244 ~ell~-~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~g  306 (370)
                      ++++. .||+++-|-     +.+.|+.+....++ =.+++--+.+++ ..+ -.+.|.+..+..
T Consensus       285 ~~~~~~~~Dil~P~A-----~~~~I~~~~a~~l~-ak~V~EgAN~p~-t~~-a~~~l~~~Gi~~  340 (421)
T 1v9l_A          285 DAIFKLDVDIFVPAA-----IENVIRGDNAGLVK-ARLVVEGANGPT-TPE-AERILYERGVVV  340 (421)
T ss_dssp             TGGGGCCCSEEEECS-----CSSCBCTTTTTTCC-CSEEECCSSSCB-CHH-HHHHHHTTTCEE
T ss_pred             hhhhcCCccEEEecC-----cCCccchhhHHHcC-ceEEEecCCCcC-CHH-HHHHHHHCCCEE
Confidence            44444 899998774     34567777666674 356777777775 444 456777777763

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=94.05  E-value=0.046  Score=50.25  Aligned_cols=42  Identities=21%  Similarity=0.337  Sum_probs=35.1

Q ss_pred             CcccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          171 TGETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       171 ~~~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      ....+.||++.|.|. |.||+++|+.|...|++|++.+++...
T Consensus         8 ~~~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~   50 (269)
T 3vtz_A            8 HMEEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKS   50 (269)
T ss_dssp             --CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--
T ss_pred             cccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchh
Confidence            346789999999996 789999999999999999999987544

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=94.05  E-value=0.022  Score=54.37  Aligned_cols=37  Identities=27%  Similarity=0.552  Sum_probs=33.3

Q ss_pred             cCceEEEE-ecCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          176 LGKTVFIL-GFGNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       176 ~g~tvGIi-GlG~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      .|++|.|+ |.|.||...++.++.+|++|++.+++..+
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~  187 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNET  187 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            68999999 69999999999999999999999986543

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=94.04  E-value=0.047  Score=51.98  Aligned_cols=77  Identities=19%  Similarity=0.214  Sum_probs=48.3

Q ss_pred             ccccCceEEEEe-cCchhHHHHHHhccC-CCEEEEEcCCCccccccccccchhhhcccccccccc-ccC-CCCCHHHHHh
Q 017490          173 ETLLGKTVFILG-FGNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKG-CHEDIFEFAS  248 (370)
Q Consensus       173 ~~l~g~tvGIiG-lG~IG~~vA~~l~~~-G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~l~ell~  248 (370)
                      ..+.+++|.|.| .|.||+.+++.|... |++|++.+|+..+.......        .. .+... ... ....++++++
T Consensus        20 ~~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~--------~~-v~~~~~Dl~~d~~~~~~~~~   90 (372)
T 3slg_A           20 GSMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKH--------ER-MHFFEGDITINKEWVEYHVK   90 (372)
T ss_dssp             ---CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGS--------TT-EEEEECCTTTCHHHHHHHHH
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccC--------CC-eEEEeCccCCCHHHHHHHhc
Confidence            457789999999 699999999999887 99999999876542110000        00 00000 001 1234667788


Q ss_pred             cCCEEEEecc
Q 017490          249 KADVVVCCLS  258 (370)
Q Consensus       249 ~aDiV~l~lP  258 (370)
                      .+|+|+.+..
T Consensus        91 ~~d~Vih~A~  100 (372)
T 3slg_A           91 KCDVILPLVA  100 (372)
T ss_dssp             HCSEEEECBC
T ss_pred             cCCEEEEcCc
Confidence            9999987654

>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}

Probab=94.04  E-value=0.16  Score=47.76  Aligned_cols=67  Identities=25%  Similarity=0.160  Sum_probs=50.2

Q ss_pred             cccCceEEEEec---CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHh
Q 017490          174 TLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS  248 (370)
Q Consensus       174 ~l~g~tvGIiGl---G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~  248 (370)
                      .+.|++|+++|=   +++.++++..+..+|++|....|..-.   +              .+ ..+.+  ...++++.++
T Consensus       143 ~l~gl~va~vGDl~~~rva~Sl~~~~~~~g~~v~~~~P~~~~---p--------------~~-~~~~g~~~~~d~~eav~  204 (291)
T 3d6n_B          143 EVKDLRVLYVGDIKHSRVFRSGAPLLNMFGAKIGVCGPKTLI---P--------------RD-VEVFKVDVFDDVDKGID  204 (291)
T ss_dssp             CCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGS---C--------------TT-GGGGCEEEESSHHHHHH
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEECCchhC---C--------------ch-HHHCCCEEEcCHHHHhC
Confidence            478999999996   899999999999999999998763211   0              01 01111  2468999999


Q ss_pred             cCCEEEEeccC
Q 017490          249 KADVVVCCLSL  259 (370)
Q Consensus       249 ~aDiV~l~lP~  259 (370)
                      ++|+|.. +-.
T Consensus       205 ~aDvvy~-~~~  214 (291)
T 3d6n_B          205 WADVVIW-LRL  214 (291)
T ss_dssp             HCSEEEE-CCC
T ss_pred             CCCEEEE-eCc
Confidence            9999998 554

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=93.99  E-value=0.043  Score=51.75  Aligned_cols=38  Identities=26%  Similarity=0.295  Sum_probs=33.9

Q ss_pred             ccCceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          175 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       175 l~g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      +.+++|.|.| .|.||+.+++.|...|++|++.+|....
T Consensus        23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~   61 (351)
T 3ruf_A           23 FSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTG   61 (351)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSC
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence            5688999999 5999999999999999999999987543

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=93.99  E-value=0.051  Score=51.82  Aligned_cols=93  Identities=13%  Similarity=0.138  Sum_probs=58.9

Q ss_pred             CceEEEE-ecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHH------hc
Q 017490          177 GKTVFIL-GFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA------SK  249 (370)
Q Consensus       177 g~tvGIi-GlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell------~~  249 (370)
                      +++|.|. |.|.||...++.++.+|++|++.+++..+......    +    + .+..++.  ...++.+.+      ..
T Consensus       165 ~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----~----G-a~~~~~~--~~~~~~~~v~~~~~~~g  233 (349)
T 3pi7_A          165 EKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKD----I----G-AAHVLNE--KAPDFEATLREVMKAEQ  233 (349)
T ss_dssp             CSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHH----H----T-CSEEEET--TSTTHHHHHHHHHHHHC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----c----C-CCEEEEC--CcHHHHHHHHHHhcCCC
Confidence            3577665 89999999999999999999999986554211000    0    0 0000100  112333322      25


Q ss_pred             CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                      .|+|+-++.. +.+     ...++.++++..++.++.
T Consensus       234 ~D~vid~~g~-~~~-----~~~~~~l~~~G~iv~~G~  264 (349)
T 3pi7_A          234 PRIFLDAVTG-PLA-----SAIFNAMPKRARWIIYGR  264 (349)
T ss_dssp             CCEEEESSCH-HHH-----HHHHHHSCTTCEEEECCC
T ss_pred             CcEEEECCCC-hhH-----HHHHhhhcCCCEEEEEec
Confidence            8999988752 221     467788999999999974

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=93.98  E-value=0.052  Score=50.38  Aligned_cols=70  Identities=19%  Similarity=0.192  Sum_probs=46.5

Q ss_pred             CceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEE
Q 017490          177 GKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  255 (370)
Q Consensus       177 g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  255 (370)
                      +++|.|.| .|.||+.+++.|...|++|++.+|+.....  ..   ...       -...... .+++.++++.+|+|+.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~--~~---~~~-------~~~~Dl~-~~~~~~~~~~~d~Vih   68 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA--IN---DYE-------YRVSDYT-LEDLINQLNDVDAVVH   68 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC----------CCE-------EEECCCC-HHHHHHHTTTCSEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc--CC---ceE-------EEEcccc-HHHHHHhhcCCCEEEE
Confidence            36899999 699999999999999999999999732210  00   000       0000111 2356677889999987


Q ss_pred             eccC
Q 017490          256 CLSL  259 (370)
Q Consensus       256 ~lP~  259 (370)
                      +...
T Consensus        69 ~a~~   72 (311)
T 3m2p_A           69 LAAT   72 (311)
T ss_dssp             CCCC
T ss_pred             cccc
Confidence            7654

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=93.98  E-value=0.12  Score=49.83  Aligned_cols=94  Identities=18%  Similarity=0.173  Sum_probs=60.3

Q ss_pred             cCceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccc-ccccC--CCCCHHHHH---h
Q 017490          176 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDL-VDEKG--CHEDIFEFA---S  248 (370)
Q Consensus       176 ~g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~l~ell---~  248 (370)
                      .|++|.|+| .|.||...++.++.+|++|++.++ ..+....              .++ ++...  ...++.+.+   .
T Consensus       183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~-~~~~~~~--------------~~lGa~~v~~~~~~~~~~~~~~~~  247 (375)
T 2vn8_A          183 TGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCS-QDASELV--------------RKLGADDVIDYKSGSVEEQLKSLK  247 (375)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC-GGGHHHH--------------HHTTCSEEEETTSSCHHHHHHTSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEeC-hHHHHHH--------------HHcCCCEEEECCchHHHHHHhhcC
Confidence            688999999 799999999999999999999874 2221000              000 01000  112333333   2


Q ss_pred             cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490          249 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       249 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~  288 (370)
                      ..|+|+-++.....+   + ...+..++++..++.++...
T Consensus       248 g~D~vid~~g~~~~~---~-~~~~~~l~~~G~iv~~g~~~  283 (375)
T 2vn8_A          248 PFDFILDNVGGSTET---W-APDFLKKWSGATYVTLVTPF  283 (375)
T ss_dssp             CBSEEEESSCTTHHH---H-GGGGBCSSSCCEEEESCCSH
T ss_pred             CCCEEEECCCChhhh---h-HHHHHhhcCCcEEEEeCCCc
Confidence            589999987643111   1 24567789999999998543

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=93.98  E-value=0.024  Score=54.99  Aligned_cols=37  Identities=32%  Similarity=0.354  Sum_probs=33.1

Q ss_pred             cCceEEEEecCchhHHHHHHhccCC-CEEEEEcCCCcc
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWAS  212 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G-~~V~~~dr~~~~  212 (370)
                      .|.+|.|+|.|.+|...++.++.+| .+|++.+++..+
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~  232 (380)
T 1vj0_A          195 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNR  232 (380)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHH
Confidence            5889999999999999999999999 599999986543

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=93.94  E-value=0.018  Score=54.76  Aligned_cols=36  Identities=19%  Similarity=0.364  Sum_probs=32.8

Q ss_pred             cCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          176 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       176 ~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      .|++|.|+|. |.||..+++.++..|++|++.+++..
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~  191 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKE  191 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5889999997 99999999999999999999998644

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=93.92  E-value=0.054  Score=53.04  Aligned_cols=37  Identities=16%  Similarity=0.216  Sum_probs=33.2

Q ss_pred             cccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          174 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      -+.+++|+|+|-|..|+.+++.++.+|++|+++| ...
T Consensus        21 mm~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d-~~~   57 (403)
T 3k5i_A           21 MWNSRKVGVLGGGQLGRMLVESANRLNIQVNVLD-ADN   57 (403)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE-STT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE-CCC
Confidence            3568999999999999999999999999999999 543

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=93.92  E-value=0.3  Score=48.73  Aligned_cols=39  Identities=18%  Similarity=0.267  Sum_probs=35.7

Q ss_pred             cccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCC
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      ..+++|++|.|||.|.+|.+.++.|...|++|.++++..
T Consensus         7 ~~~l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~   45 (457)
T 1pjq_A            7 FCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (457)
T ss_dssp             EECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             EEECCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCC
Confidence            457899999999999999999999999999999999754

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=93.91  E-value=0.061  Score=49.53  Aligned_cols=38  Identities=37%  Similarity=0.420  Sum_probs=33.3

Q ss_pred             ccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCC
Q 017490          173 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       173 ~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      ..+.||++.|.|. |.||+++|+.|...|++|++.+++.
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~   65 (271)
T 3v2g_A           27 ISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNA   65 (271)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            3689999999996 7899999999999999999886653

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=93.90  E-value=0.042  Score=52.22  Aligned_cols=90  Identities=14%  Similarity=0.121  Sum_probs=55.7

Q ss_pred             CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCC---HHHH-HhcCCE
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHED---IFEF-ASKADV  252 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~el-l~~aDi  252 (370)
                      .+++.|+|+|.+|+.+++.|...|. |+++|++++... ...            .....-.+...+   ++++ +++||.
T Consensus       115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~------------~~~~~i~gd~~~~~~L~~a~i~~a~~  180 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKK-VLR------------SGANFVHGDPTRVSDLEKANVRGARA  180 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHH------------TTCEEEESCTTSHHHHHHTCSTTEEE
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHh------------CCcEEEEeCCCCHHHHHhcChhhccE
Confidence            4579999999999999999999999 999998765421 000            000001122233   3333 678999


Q ss_pred             EEEeccCChhhhcccCHHHHhcCCCCcEEE
Q 017490          253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLV  282 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~~l~~mk~gailI  282 (370)
                      |+++++..+.  .+.-....+.+.+...+|
T Consensus       181 vi~~~~~d~~--n~~~~~~ar~~~~~~~ii  208 (336)
T 1lnq_A          181 VIVDLESDSE--TIHCILGIRKIDESVRII  208 (336)
T ss_dssp             EEECCSSHHH--HHHHHHHHHTTCTTSEEE
T ss_pred             EEEcCCccHH--HHHHHHHHHHHCCCCeEE
Confidence            9999875432  333344556666664433

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=93.87  E-value=0.043  Score=52.83  Aligned_cols=46  Identities=24%  Similarity=0.364  Sum_probs=37.6

Q ss_pred             cccCCCCcccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCC
Q 017490          165 KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  210 (370)
Q Consensus       165 ~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~  210 (370)
                      +-|.......|++++|.|||+|.+|.++|+.|...|. ++..+|+..
T Consensus        22 Rll~~~g~~kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~   68 (340)
T 3rui_A           22 RILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT   68 (340)
T ss_dssp             HTCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             hhcchhhHHHHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence            3444433457899999999999999999999999898 788888754

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=93.82  E-value=0.069  Score=50.21  Aligned_cols=40  Identities=30%  Similarity=0.335  Sum_probs=32.1

Q ss_pred             cccccCceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          172 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       172 ~~~l~g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      ...+.+++|.|.| .|.||+.+++.|...|++|++.+|...
T Consensus        16 ~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~   56 (333)
T 2q1w_A           16 PRGSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFAT   56 (333)
T ss_dssp             -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             eecCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCc
Confidence            4567889999999 699999999999999999999998753

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=93.80  E-value=0.054  Score=49.65  Aligned_cols=39  Identities=26%  Similarity=0.376  Sum_probs=33.9

Q ss_pred             cccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCC
Q 017490          172 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       172 ~~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      ...+.||++.|.|. |.||+++|+.|...|++|++.+++.
T Consensus        13 ~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~   52 (270)
T 3is3_A           13 PGRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANS   52 (270)
T ss_dssp             TTCCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCC
Confidence            45689999999996 7899999999999999999876643

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=93.74  E-value=0.028  Score=54.27  Aligned_cols=110  Identities=16%  Similarity=0.150  Sum_probs=62.4

Q ss_pred             ccCceEEEEec-CchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhcccccccccc--ccCCCCCHHHHHhc
Q 017490          175 LLGKTVFILGF-GNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD--EKGCHEDIFEFASK  249 (370)
Q Consensus       175 l~g~tvGIiGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~  249 (370)
                      +.+++|+|||. |.||..+|..+..+|.  +|..+|....+.... .  .++..      ....  ......+..+.++.
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~-a--~DL~~------~~~~~~~i~~t~d~~~al~d   76 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGV-A--EEIRH------CGFEGLNLTFTSDIKEALTD   76 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHH-H--HHHHH------HCCTTCCCEEESCHHHHHTT
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHH-H--Hhhhh------CcCCCCceEEcCCHHHHhCC
Confidence            45789999998 9999999998877774  899999864321100 0  00000      0000  00012577788999


Q ss_pred             CCEEEEeccCChhhhc-----cc--CHH-------HHhcCCCCcE-EEEcCCCcccCHHHHH
Q 017490          250 ADVVVCCLSLNKQTAG-----IV--NKS-------FLSSMKKGSL-LVNIARGGLLDYEAIA  296 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~-----li--~~~-------~l~~mk~gai-lIN~sRg~~vd~~aL~  296 (370)
                      ||+|+++... +...+     ++  |.+       .+....|.++ +++++  ..+|.-..+
T Consensus        77 ADvVvitaG~-p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvs--NPvd~~t~i  135 (343)
T 3fi9_A           77 AKYIVSSGGA-PRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIF--NPADITGLV  135 (343)
T ss_dssp             EEEEEECCC--------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECS--SSHHHHHHH
T ss_pred             CCEEEEccCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEec--CchHHHHHH
Confidence            9999998532 22222     12  111       2333357775 88886  445544433

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=93.70  E-value=0.028  Score=53.06  Aligned_cols=36  Identities=17%  Similarity=0.297  Sum_probs=32.7

Q ss_pred             cCceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          176 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       176 ~g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      .|++|.|+| .|.||..+++.++..|++|++.+++..
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~  176 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQ  176 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            588999999 799999999999999999999998643

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=93.68  E-value=0.046  Score=54.53  Aligned_cols=122  Identities=10%  Similarity=0.163  Sum_probs=62.9

Q ss_pred             ceEEEEecCchhHHHHHHhcc-CCCEE-EEEcCCCccccccccccchhhhcccc-----cccc---cc--ccCCCCCHHH
Q 017490          178 KTVFILGFGNIGVELAKRLRP-FGVKI-IATKRSWASHSQVSCQSSALAVKNGI-----IDDL---VD--EKGCHEDIFE  245 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~-~G~~V-~~~dr~~~~~~~~~~~~~~~~~~~~~-----~~~~---~~--~~~~~~~l~e  245 (370)
                      .+|||||+|.||+.+++.+.. -|++| .++|++..+........  |-..+..     ..+.   ..  ....+.++++
T Consensus        24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~--yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~ee  101 (446)
T 3upl_A           24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTA--YGDEENAREATTESAMTRAIEAGKIAVTDDNDL  101 (446)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHH--HSSSTTEEECSSHHHHHHHHHTTCEEEESCHHH
T ss_pred             eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHh--cCCccccccccchhhhhhhhccCCceEECCHHH
Confidence            479999999999999988765 47775 45677654421110000  0000000     0000   00  0013478999


Q ss_pred             HHh--cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc-ccCHHHHHHHHHhCCce
Q 017490          246 FAS--KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG-LLDYEAIAHYLECGHLG  305 (370)
Q Consensus       246 ll~--~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~-~vd~~aL~~aL~~g~i~  305 (370)
                      +++  +.|+|++++|.. ....   .-.+..|+.|.-++...-+- ...-+.|.++-++..+.
T Consensus       102 LL~d~dIDaVviaTp~p-~~H~---e~a~~AL~AGKHVv~~nk~l~~~eg~eL~~~A~e~Gvv  160 (446)
T 3upl_A          102 ILSNPLIDVIIDATGIP-EVGA---ETGIAAIRNGKHLVMMNVEADVTIGPYLKAQADKQGVI  160 (446)
T ss_dssp             HHTCTTCCEEEECSCCH-HHHH---HHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HhcCCCCCEEEEcCCCh-HHHH---HHHHHHHHcCCcEEecCcccCHHHHHHHHHHHHHhCCe
Confidence            997  589999999853 2211   11233345555555321111 12234566666655554

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=93.66  E-value=0.027  Score=54.87  Aligned_cols=37  Identities=27%  Similarity=0.369  Sum_probs=33.4

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCcc
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  212 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~  212 (370)
                      .|.+|.|+|.|.||...++.++.+|+ +|++.+++..+
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~  222 (398)
T 2dph_A          185 PGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPER  222 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHH
Confidence            58899999999999999999999999 99999987543

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=93.65  E-value=0.042  Score=54.95  Aligned_cols=119  Identities=15%  Similarity=0.097  Sum_probs=67.0

Q ss_pred             CceEEEEecCch-hHHHHHHhcc----C-CCEEEEEcCCC--ccccccccccchhhhccccccccccccCCCCCHHHHHh
Q 017490          177 GKTVFILGFGNI-GVELAKRLRP----F-GVKIIATKRSW--ASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS  248 (370)
Q Consensus       177 g~tvGIiGlG~I-G~~vA~~l~~----~-G~~V~~~dr~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  248 (370)
                      ..+|+|||.|.. |.+++..|..    + +.+|..||+..  .......+....+....    ..-.......++++.++
T Consensus         7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~----~~~~~i~~t~D~~eal~   82 (450)
T 1s6y_A            7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKA----GVPIEIHLTLDRRRALD   82 (450)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHT----TCCCEEEEESCHHHHHT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhc----CCCcEEEEeCCHHHHhC
Confidence            358999999999 8776655543    3 56899999976  33111000000000000    00000011257888999


Q ss_pred             cCCEEEEeccCChh---hh--------ccc---------------C-------HHHHhcCCCCcEEEEcCCCcccCHHHH
Q 017490          249 KADVVVCCLSLNKQ---TA--------GIV---------------N-------KSFLSSMKKGSLLVNIARGGLLDYEAI  295 (370)
Q Consensus       249 ~aDiV~l~lP~t~~---t~--------~li---------------~-------~~~l~~mk~gailIN~sRg~~vd~~aL  295 (370)
                      .||+|+++.|....   ++        +++               +       .+.+....|++++||.+..--+-+.++
T Consensus        83 gAD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P~a~ii~~tNPvdivT~a~  162 (450)
T 1s6y_A           83 GADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAV  162 (450)
T ss_dssp             TCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH
T ss_pred             CCCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH
Confidence            99999999985321   11        111               0       123444578999999988755545555


Q ss_pred             HHHH
Q 017490          296 AHYL  299 (370)
Q Consensus       296 ~~aL  299 (370)
                      .+..
T Consensus       163 ~k~~  166 (450)
T 1s6y_A          163 LRYT  166 (450)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            5543

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=93.63  E-value=0.046  Score=49.62  Aligned_cols=69  Identities=9%  Similarity=0.231  Sum_probs=47.0

Q ss_pred             ceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCCCCHHHHHhcCCEEEE
Q 017490          178 KTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVVC  255 (370)
Q Consensus       178 ~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~l  255 (370)
                      ++|.|.|. |.||+.+++.|...|++|++.+|+....... .            ..... .....+++.++++..|+|+.
T Consensus         3 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~------------~~~~~~Dl~d~~~~~~~~~~~d~vi~   69 (267)
T 3ay3_A            3 NRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAEA-H------------EEIVACDLADAQAVHDLVKDCDGIIH   69 (267)
T ss_dssp             EEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCCCT-T------------EEECCCCTTCHHHHHHHHTTCSEEEE
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCccccCC-C------------ccEEEccCCCHHHHHHHHcCCCEEEE
Confidence            68999997 9999999999999999999999875431100 0            00000 00112346677889999988


Q ss_pred             eccC
Q 017490          256 CLSL  259 (370)
Q Consensus       256 ~lP~  259 (370)
                      +...
T Consensus        70 ~a~~   73 (267)
T 3ay3_A           70 LGGV   73 (267)
T ss_dssp             CCSC
T ss_pred             CCcC
Confidence            7653

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=93.62  E-value=0.05  Score=52.10  Aligned_cols=36  Identities=22%  Similarity=0.245  Sum_probs=32.5

Q ss_pred             cCceEEEEecCchhHHH-HHHh-ccCCCE-EEEEcCCCc
Q 017490          176 LGKTVFILGFGNIGVEL-AKRL-RPFGVK-IIATKRSWA  211 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~v-A~~l-~~~G~~-V~~~dr~~~  211 (370)
                      .+.+|.|+|.|.||... ++.+ +.+|++ |++.+++..
T Consensus       172 ~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~  210 (357)
T 2b5w_A          172 DPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDR  210 (357)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcc
Confidence            44899999999999999 9999 999997 999998754

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=93.60  E-value=0.067  Score=50.55  Aligned_cols=38  Identities=24%  Similarity=0.273  Sum_probs=34.1

Q ss_pred             cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      .+.+++|.|.|. |.||+.+++.|...|++|++++|...
T Consensus        24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   62 (352)
T 1sb8_A           24 PAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFAT   62 (352)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             CccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence            467889999997 99999999999999999999998653

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=93.58  E-value=0.06  Score=49.44  Aligned_cols=41  Identities=27%  Similarity=0.453  Sum_probs=34.5

Q ss_pred             cccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          172 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       172 ~~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      ...+.||++.|.|. |.||+++|+.|...|++|++.+|+...
T Consensus        23 m~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~   64 (266)
T 3uxy_A           23 MQGFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAG   64 (266)
T ss_dssp             ---CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTT
T ss_pred             hhCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            45789999999996 789999999999999999999987544

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=93.58  E-value=0.017  Score=54.32  Aligned_cols=86  Identities=17%  Similarity=0.259  Sum_probs=52.5

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC---CCCCHHHHHhcCC
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFASKAD  251 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~~aD  251 (370)
                      -.|.+|.|+|.|.+|...++.++.+|++|++.+ +..+..                  .+.+.+   ...+.+++-...|
T Consensus       141 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~------------------~~~~lGa~~v~~d~~~v~~g~D  201 (315)
T 3goh_A          141 TKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQA------------------LAAKRGVRHLYREPSQVTQKYF  201 (315)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHH------------------HHHHHTEEEEESSGGGCCSCEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHH------------------HHHHcCCCEEEcCHHHhCCCcc
Confidence            368899999999999999999999999999998 544311                  111111   0011222223567


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcC
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~s  285 (370)
                      +|+-++... .+     ...++.++++..++.++
T Consensus       202 vv~d~~g~~-~~-----~~~~~~l~~~G~~v~~g  229 (315)
T 3goh_A          202 AIFDAVNSQ-NA-----AALVPSLKANGHIICIQ  229 (315)
T ss_dssp             EEECC-------------TTGGGEEEEEEEEEEC
T ss_pred             EEEECCCch-hH-----HHHHHHhcCCCEEEEEe
Confidence            777766532 11     23466677777777774

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=93.53  E-value=0.038  Score=53.08  Aligned_cols=82  Identities=20%  Similarity=0.313  Sum_probs=44.2

Q ss_pred             ceEEEEecCchhHHHHHHhcc-CCCEEEEE-cCCCccccccccccchhhhcccccccc--ccccC--CCCCHHHHHhcCC
Q 017490          178 KTVFILGFGNIGVELAKRLRP-FGVKIIAT-KRSWASHSQVSCQSSALAVKNGIIDDL--VDEKG--CHEDIFEFASKAD  251 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~-~G~~V~~~-dr~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~l~ell~~aD  251 (370)
                      .+|||+|+|.||+.+++.+.. -++++.+. |+.+.... .......+..+.......  +....  ...+.++++.++|
T Consensus         2 ikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~-~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~vD   80 (337)
T 1cf2_P            2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEA-RMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEAD   80 (337)
T ss_dssp             EEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHH-HHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCS
T ss_pred             eEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHH-HhcCCcchhhccccccceeeecCCceEEcCCHHHHhcCCC
Confidence            379999999999999999875 57787655 44322100 000000000000000000  00001  1125677888999


Q ss_pred             EEEEeccCC
Q 017490          252 VVVCCLSLN  260 (370)
Q Consensus       252 iV~l~lP~t  260 (370)
                      +|+.|+|..
T Consensus        81 vV~~atp~~   89 (337)
T 1cf2_P           81 IVIDCTPEG   89 (337)
T ss_dssp             EEEECCSTT
T ss_pred             EEEECCCch
Confidence            999999854

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=93.52  E-value=0.039  Score=52.54  Aligned_cols=36  Identities=25%  Similarity=0.398  Sum_probs=32.9

Q ss_pred             cCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          176 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       176 ~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      .|++|.|+|. |.||..+++.++.+|++|++.+++..
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~  202 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSED  202 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5889999999 99999999999999999999998644

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=93.52  E-value=0.061  Score=49.13  Aligned_cols=40  Identities=35%  Similarity=0.422  Sum_probs=35.3

Q ss_pred             ccccCceEEEEecC---chhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          173 ETLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       173 ~~l~g~tvGIiGlG---~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      .+|+||++.|.|.+   .||+++|+.|...|++|++.+|+...
T Consensus         2 ~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~   44 (256)
T 4fs3_A            2 LNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERS   44 (256)
T ss_dssp             CCCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGG
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            46899999999974   69999999999999999999987543

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=93.51  E-value=0.087  Score=49.10  Aligned_cols=38  Identities=26%  Similarity=0.345  Sum_probs=34.1

Q ss_pred             cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      .+.|++|.|.|. |.||+.+++.|...|++|++++|+..
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~   46 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSAS   46 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            467899999997 99999999999999999999998643

>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A

Probab=93.48  E-value=0.22  Score=48.29  Aligned_cols=104  Identities=15%  Similarity=0.137  Sum_probs=66.8

Q ss_pred             ccCceEEEEecC--chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHHh
Q 017490          175 LLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFAS  248 (370)
Q Consensus       175 l~g~tvGIiGlG--~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~  248 (370)
                      +.|++|++||=|  ++..+++..+..+|++|.+..|..-....+..    +.   +.+.+...+.+    ...++++.++
T Consensus       178 l~glkva~vGD~~nnva~Sl~~~~~~lG~~v~~~~P~~~~p~~~~~----~~---~~~~~~~~~~g~~i~~~~d~~eav~  250 (365)
T 4amu_A          178 LKNKKIVFIGDYKNNVGVSTMIGAAFNGMHVVMCGPDNYKNEIDKN----VL---AKCIELFKRNGGSLRFSTDKILAAQ  250 (365)
T ss_dssp             CTTCEEEEESSTTSHHHHHHHHHHHHTTCEEEEESCGGGGGGSCHH----HH---HHHHHHHHHHSCEEEEESCHHHHTT
T ss_pred             CCCCEEEEECCCCcchHHHHHHHHHHcCCEEEEECCccccCCCcHH----HH---HHHHHHHHHcCCEEEEECCHHHHhc
Confidence            889999999987  78899999999999999998763211000000    00   00000011111    2368999999


Q ss_pred             cCCEEEEec----cCChh---------hhcccCHHHHhcCCCCcEEEEcC
Q 017490          249 KADVVVCCL----SLNKQ---------TAGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       249 ~aDiV~l~l----P~t~~---------t~~li~~~~l~~mk~gailIN~s  285 (370)
                      .+|+|..-+    ....+         ..+-++.+.++.+|++++|.-+.
T Consensus       251 ~aDVVytd~W~smg~~~~~~~er~~~~~~y~vt~ell~~a~~dai~MHcL  300 (365)
T 4amu_A          251 DADVIYTDVWVSLGEPFELFDKRIGELKNFQVDMNMIKAAKNDVIFLHCL  300 (365)
T ss_dssp             TCSEEEECCSCCTTCCHHHHHHHHHHHTTCCBCHHHHHHSCTTCEEEECS
T ss_pred             CCCEEEecccccCCchhhhHHHHHHHhcccccCHHHHHhcCCCcEEECCC
Confidence            999998732    11111         12457889999999999998874

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=93.44  E-value=0.1  Score=50.02  Aligned_cols=74  Identities=20%  Similarity=0.188  Sum_probs=48.9

Q ss_pred             ccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCCCCHHHHHhcCCE
Q 017490          175 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADV  252 (370)
Q Consensus       175 l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDi  252 (370)
                      ..+++|.|.|. |.||+.+++.|...|++|++++|+..........        +  ..... .....++++++++.+|+
T Consensus        27 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~--------~--v~~~~~Dl~d~~~~~~~~~~~d~   96 (379)
T 2c5a_A           27 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMF--------C--DEFHLVDLRVMENCLKVTEGVDH   96 (379)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGT--------C--SEEEECCTTSHHHHHHHHTTCSE
T ss_pred             ccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhccC--------C--ceEEECCCCCHHHHHHHhCCCCE
Confidence            46789999997 9999999999999999999999875432110000        0  00000 00112346677889999


Q ss_pred             EEEecc
Q 017490          253 VVCCLS  258 (370)
Q Consensus       253 V~l~lP  258 (370)
                      |+.+..
T Consensus        97 Vih~A~  102 (379)
T 2c5a_A           97 VFNLAA  102 (379)
T ss_dssp             EEECCC
T ss_pred             EEECce
Confidence            987754

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=93.43  E-value=0.084  Score=48.92  Aligned_cols=65  Identities=15%  Similarity=0.222  Sum_probs=40.5

Q ss_pred             CceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhc--CCEE
Q 017490          177 GKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK--ADVV  253 (370)
Q Consensus       177 g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV  253 (370)
                      +++|.|.|. |.||+.+++.|...|++|++.+|+.....    .     + .   .++    ....+++++++.  +|+|
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~----~-----~-~---~Dl----~d~~~~~~~~~~~~~d~v   64 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPK----F-----E-Q---VNL----LDSNAVHHIIHDFQPHVI   64 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC-----------------------------------CHHHHHHHCCSEE
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCCCC----e-----E-E---ecC----CCHHHHHHHHHhhCCCEE
Confidence            578999997 99999999999999999999997643200    0     0 0   001    123456677765  8998


Q ss_pred             EEecc
Q 017490          254 VCCLS  258 (370)
Q Consensus       254 ~l~lP  258 (370)
                      +.+..
T Consensus        65 ih~A~   69 (315)
T 2ydy_A           65 VHCAA   69 (315)
T ss_dssp             EECC-
T ss_pred             EECCc
Confidence            87764

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=93.41  E-value=0.089  Score=50.59  Aligned_cols=37  Identities=22%  Similarity=0.328  Sum_probs=32.8

Q ss_pred             cCceEEEEe-cCchhHHHHHHhcc-CCCEEEEEcCCCcc
Q 017490          176 LGKTVFILG-FGNIGVELAKRLRP-FGVKIIATKRSWAS  212 (370)
Q Consensus       176 ~g~tvGIiG-lG~IG~~vA~~l~~-~G~~V~~~dr~~~~  212 (370)
                      .|.+|.|+| .|.||...++.++. .|.+|++.+++..+
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~  209 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPET  209 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            689999999 99999999999998 59999999986543

>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*

Probab=93.38  E-value=0.046  Score=52.64  Aligned_cols=32  Identities=38%  Similarity=0.425  Sum_probs=28.0

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEE-EcCC
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIA-TKRS  209 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~-~dr~  209 (370)
                      .+|||.|+|+||+.++|.+..+|++|++ .|+.
T Consensus         8 ~kvgInGFGRIGrlv~R~~~~~~veivainDp~   40 (346)
T 3h9e_O            8 LTVGINGFGRIGRLVLRACMEKGVKVVAVNDPF   40 (346)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             eEEEEECCChHHHHHHHHHHhCCCEEEEEeCCC
Confidence            4899999999999999999988999888 4543

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=93.38  E-value=0.11  Score=47.02  Aligned_cols=40  Identities=23%  Similarity=0.218  Sum_probs=35.2

Q ss_pred             CcccccCceEEEEec---CchhHHHHHHhccCCCEEEEEcCCC
Q 017490          171 TGETLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       171 ~~~~l~g~tvGIiGl---G~IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      ....+.+|++.|.|.   |.||+++|+.|...|++|++.+|+.
T Consensus         8 ~~~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~   50 (271)
T 3ek2_A            8 HMGFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGD   50 (271)
T ss_dssp             -CCTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CccccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecch
Confidence            456789999999996   5899999999999999999998873

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=93.35  E-value=0.087  Score=50.38  Aligned_cols=35  Identities=23%  Similarity=0.281  Sum_probs=32.2

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      |||+|+|-|..|..+++.++.+|++|+++|+++..
T Consensus         2 K~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~~   36 (363)
T 4ffl_A            2 KTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQA   36 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence            79999999999999999999999999999987654

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=93.34  E-value=0.043  Score=53.36  Aligned_cols=37  Identities=30%  Similarity=0.452  Sum_probs=33.0

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCcc
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  212 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~  212 (370)
                      .|.+|.|+|.|.||...++.++.+|+ +|++.+++..+
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~  222 (398)
T 1kol_A          185 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPAR  222 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHH
Confidence            58899999999999999999999999 79999876543

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=93.31  E-value=0.029  Score=51.23  Aligned_cols=71  Identities=17%  Similarity=0.187  Sum_probs=44.5

Q ss_pred             eEEEEec-CchhHHHHHHhccC--CCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCCCCHHHHHhcCCEEE
Q 017490          179 TVFILGF-GNIGVELAKRLRPF--GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVV  254 (370)
Q Consensus       179 tvGIiGl-G~IG~~vA~~l~~~--G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~  254 (370)
                      +|.|.|. |.||+.+++.|...  |++|++.+|+..+......        .+  ..... .....++++++++.+|+|+
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~--------~~--~~~~~~D~~d~~~~~~~~~~~d~vi   70 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAA--------QG--ITVRQADYGDEAALTSALQGVEKLL   70 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHH--------TT--CEEEECCTTCHHHHHHHTTTCSEEE
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhc--------CC--CeEEEcCCCCHHHHHHHHhCCCEEE
Confidence            4789996 99999999999988  9999999987543110000        00  00000 0012235667888999998


Q ss_pred             EeccC
Q 017490          255 CCLSL  259 (370)
Q Consensus       255 l~lP~  259 (370)
                      .+...
T Consensus        71 ~~a~~   75 (286)
T 2zcu_A           71 LISSS   75 (286)
T ss_dssp             ECC--
T ss_pred             EeCCC
Confidence            76553

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=93.28  E-value=0.083  Score=50.63  Aligned_cols=40  Identities=25%  Similarity=0.425  Sum_probs=35.2

Q ss_pred             ccccCceEEEEec-CchhHHHHHHhccCC-CEEEEEcCCCcc
Q 017490          173 ETLLGKTVFILGF-GNIGVELAKRLRPFG-VKIIATKRSWAS  212 (370)
Q Consensus       173 ~~l~g~tvGIiGl-G~IG~~vA~~l~~~G-~~V~~~dr~~~~  212 (370)
                      ..+++++|.|.|. |.||+.+++.|...| ++|++++|....
T Consensus        28 ~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~   69 (377)
T 2q1s_A           28 SKLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSA   69 (377)
T ss_dssp             GGGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTC
T ss_pred             HHhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCC
Confidence            3578999999995 999999999999999 999999987543

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=93.24  E-value=0.1  Score=48.32  Aligned_cols=62  Identities=19%  Similarity=0.272  Sum_probs=45.8

Q ss_pred             cCceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHh--cCCE
Q 017490          176 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADV  252 (370)
Q Consensus       176 ~g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDi  252 (370)
                      .+++|.|.| .|.||+.+++.|...|++|++.+++...                   ++.    ..++++++++  .+|+
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~~~-------------------D~~----d~~~~~~~~~~~~~d~   58 (321)
T 1e6u_A            2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDEL-------------------NLL----DSRAVHDFFASERIDQ   58 (321)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTTC-------------------CTT----CHHHHHHHHHHHCCSE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCccC-------------------Ccc----CHHHHHHHHHhcCCCE
Confidence            367899999 5999999999999999999998875321                   111    1234667777  8999


Q ss_pred             EEEeccCC
Q 017490          253 VVCCLSLN  260 (370)
Q Consensus       253 V~l~lP~t  260 (370)
                      |+.+....
T Consensus        59 vih~a~~~   66 (321)
T 1e6u_A           59 VYLAAAKV   66 (321)
T ss_dssp             EEECCCCC
T ss_pred             EEEcCeec
Confidence            98776543

>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}

Probab=93.24  E-value=0.19  Score=48.65  Aligned_cols=103  Identities=18%  Similarity=0.139  Sum_probs=68.3

Q ss_pred             cccCceEEEEecC--chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHH
Q 017490          174 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFA  247 (370)
Q Consensus       174 ~l~g~tvGIiGlG--~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell  247 (370)
                      .+.|.+|+++|=|  ++..+++..+..+|++|.+..|..-..  +..    +.   +...+.+.+.+    ...++++.+
T Consensus       173 ~l~gl~va~vGD~~~rva~Sl~~~~~~lG~~v~~~~P~~l~p--~~~----~~---~~~~~~a~~~G~~v~~~~d~~eav  243 (359)
T 2w37_A          173 KLQGLTLTFMGDGRNNVANSLLVTGAILGVNIHIVAPKALFP--TEE----TQ---NIAKGFAEKSGAKLVITDDLDEGL  243 (359)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHHTCEEEEECCGGGSC--CHH----HH---HHHHHHHHHHTCCEEEESCHHHHH
T ss_pred             CcCCeEEEEECCCccchHHHHHHHHHHcCCEEEEECCccccC--CHH----HH---HHHHHHHHHcCCeEEEEeCHHHHh
Confidence            4789999999985  999999999999999999987642211  000    00   00000011111    246899999


Q ss_pred             hcCCEEEEecc----C--Chh-----hhcccCHHHHhcCC---CCcEEEEcC
Q 017490          248 SKADVVVCCLS----L--NKQ-----TAGIVNKSFLSSMK---KGSLLVNIA  285 (370)
Q Consensus       248 ~~aDiV~l~lP----~--t~~-----t~~li~~~~l~~mk---~gailIN~s  285 (370)
                      +.+|+|..-.=    .  .++     ..+-++.+.++.+|   |+++|.-+.
T Consensus       244 ~~aDvvytd~w~smg~ee~~er~~~~~~y~v~~ell~~ak~~~~dai~MHcL  295 (359)
T 2w37_A          244 KGSNVVYTDVWVSMGESNWEERVKELTPYQVNMEAMKKTGTPDDQLIFMHCL  295 (359)
T ss_dssp             TTCSEEEECCSCCTTCTTHHHHHHHHGGGCBCHHHHHTTCCCGGGCEEEECS
T ss_pred             cCCCEEEEcccccccccchHHHHHHhhccccCHHHHHhhCCCCCCEEEECCC
Confidence            99999988432    0  011     23567888999998   899998774

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=93.15  E-value=0.038  Score=53.45  Aligned_cols=66  Identities=17%  Similarity=0.203  Sum_probs=44.1

Q ss_pred             ceEEEEe-cCchhHH-HH----HHhccCC-CEE----------EEEcCCCccccccccccchhhhccccccccccccC--
Q 017490          178 KTVFILG-FGNIGVE-LA----KRLRPFG-VKI----------IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--  238 (370)
Q Consensus       178 ~tvGIiG-lG~IG~~-vA----~~l~~~G-~~V----------~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  238 (370)
                      .+||||| +|.||+. .+    +.++..+ ..+          .++|++..+..                 ....+++  
T Consensus         7 irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~-----------------~~a~~~~~~   69 (383)
T 3oqb_A            7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVE-----------------ALAKRFNIA   69 (383)
T ss_dssp             EEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHH-----------------HHHHHTTCC
T ss_pred             eEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHH-----------------HHHHHhCCC
Confidence            5799999 9999997 66    5555433 232          38888765421                 1122222  


Q ss_pred             -CCCCHHHHHhc--CCEEEEeccCC
Q 017490          239 -CHEDIFEFASK--ADVVVCCLSLN  260 (370)
Q Consensus       239 -~~~~l~ell~~--aDiV~l~lP~t  260 (370)
                       .+.++++++++  .|+|+++.|..
T Consensus        70 ~~~~~~~~ll~~~~iD~V~i~tp~~   94 (383)
T 3oqb_A           70 RWTTDLDAALADKNDTMFFDAATTQ   94 (383)
T ss_dssp             CEESCHHHHHHCSSCCEEEECSCSS
T ss_pred             cccCCHHHHhcCCCCCEEEECCCch
Confidence             24789999975  89999999853

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=93.11  E-value=0.042  Score=52.03  Aligned_cols=35  Identities=26%  Similarity=0.357  Sum_probs=32.2

Q ss_pred             cCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCC
Q 017490          176 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       176 ~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      .|++|.|+|. |.||..+++.++..|++|++.+++.
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~  180 (333)
T 1wly_A          145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTE  180 (333)
T ss_dssp             TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            5889999995 9999999999999999999999864

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=93.08  E-value=0.098  Score=52.74  Aligned_cols=64  Identities=25%  Similarity=0.189  Sum_probs=46.1

Q ss_pred             CceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEE
Q 017490          177 GKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  255 (370)
Q Consensus       177 g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  255 (370)
                      +++|.|.| .|.||+.+++.|...|++|++.+|+..+... .              . .+   ....+.+.+..+|+|+.
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~~-v--------------~-~d---~~~~~~~~l~~~D~Vih  207 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGK-R--------------F-WD---PLNPASDLLDGADVLVH  207 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTTC-E--------------E-CC---TTSCCTTTTTTCSEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCccc-e--------------e-ec---ccchhHHhcCCCCEEEE
Confidence            67999999 6999999999999999999999997654110 0              0 00   01234456788999987


Q ss_pred             eccC
Q 017490          256 CLSL  259 (370)
Q Consensus       256 ~lP~  259 (370)
                      +...
T Consensus       208 ~A~~  211 (516)
T 3oh8_A          208 LAGE  211 (516)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            6543

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=93.08  E-value=0.16  Score=47.71  Aligned_cols=105  Identities=15%  Similarity=0.145  Sum_probs=63.0

Q ss_pred             ceEEEEec-CchhHHHHHHhccCCCE-EEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHh--c-CCE
Q 017490          178 KTVFILGF-GNIGVELAKRLRPFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--K-ADV  252 (370)
Q Consensus       178 ~tvGIiGl-G~IG~~vA~~l~~~G~~-V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~-aDi  252 (370)
                      .++.|+|. |++|+.+++.+...|++ |..+++......                .....   .+.+++++..  . .|+
T Consensus        14 ~~vvV~Gasg~~G~~~~~~l~~~g~~~v~~VnP~~~g~~----------------i~G~~---vy~sl~el~~~~~~~Dv   74 (297)
T 2yv2_A           14 TRVLVQGITGREGSFHAKAMLEYGTKVVAGVTPGKGGSE----------------VHGVP---VYDSVKEALAEHPEINT   74 (297)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCE----------------ETTEE---EESSHHHHHHHCTTCCE
T ss_pred             CEEEEECCCCCHHHHHHHHHHhCCCcEEEEeCCCCCCce----------------ECCEe---eeCCHHHHhhcCCCCCE
Confidence            35777798 99999999999888998 345654321000                00011   3568888887  4 999


Q ss_pred             EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc-ccCHHHHHHHHHhCCce
Q 017490          253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG-LLDYEAIAHYLECGHLG  305 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~-~vd~~aL~~aL~~g~i~  305 (370)
                      +++++|.. .+...+. +..+. .... +|..+.|= .-+++.|.++.++..+.
T Consensus        75 aIi~vp~~-~~~~~v~-ea~~~-Gi~~-vVi~t~G~~~~~~~~l~~~A~~~gi~  124 (297)
T 2yv2_A           75 SIVFVPAP-FAPDAVY-EAVDA-GIRL-VVVITEGIPVHDTMRFVNYARQKGAT  124 (297)
T ss_dssp             EEECCCGG-GHHHHHH-HHHHT-TCSE-EEECCCCCCHHHHHHHHHHHHHHTCE
T ss_pred             EEEecCHH-HHHHHHH-HHHHC-CCCE-EEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            99999953 3443332 22222 2222 44444442 23456888888877664

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=93.04  E-value=0.1  Score=53.15  Aligned_cols=83  Identities=17%  Similarity=0.171  Sum_probs=55.5

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC---CCCCHHH-HHhcCCEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFE-FASKADVV  253 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~e-ll~~aDiV  253 (370)
                      +++.|+|+|.+|+.+|+.|...|.+|++.|.+++.....              ...  -.+   ..+.|++ -++++|.+
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~--------------~~~--i~gD~t~~~~L~~agi~~ad~v  412 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCND--------------HVV--VYGDATVGQTLRQAGIDRASGI  412 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCCS--------------SCE--EESCSSSSTHHHHHTTTSCSEE
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhhc--------------CCE--EEeCCCCHHHHHhcCccccCEE
Confidence            789999999999999999999999999999886652110              000  011   1223433 36799999


Q ss_pred             EEeccCChhhhcccCHHHHhcCCCC
Q 017490          254 VCCLSLNKQTAGIVNKSFLSSMKKG  278 (370)
Q Consensus       254 ~l~lP~t~~t~~li~~~~l~~mk~g  278 (370)
                      +++++..+.  +++-....+.+.+.
T Consensus       413 i~~~~~d~~--ni~~~~~ak~l~~~  435 (565)
T 4gx0_A          413 IVTTNDDST--NIFLTLACRHLHSH  435 (565)
T ss_dssp             EECCSCHHH--HHHHHHHHHHHCSS
T ss_pred             EEECCCchH--HHHHHHHHHHHCCC
Confidence            999886533  33333445555555

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=93.04  E-value=0.2  Score=48.25  Aligned_cols=33  Identities=24%  Similarity=0.057  Sum_probs=30.4

Q ss_pred             ccCceEEEEec-CchhHHHHHHhccCCCEEEEEc
Q 017490          175 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATK  207 (370)
Q Consensus       175 l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~d  207 (370)
                      -.|.+|.|+|. |.+|...++.++.+|++|++..
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~  196 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC  196 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence            46899999999 8999999999999999998875

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=92.96  E-value=0.035  Score=53.23  Aligned_cols=37  Identities=22%  Similarity=0.233  Sum_probs=33.2

Q ss_pred             cCceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          176 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       176 ~g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      .|++|.|+| .|.||..+++.++..|++|++.+++..+
T Consensus       162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~  199 (354)
T 2j8z_A          162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKK  199 (354)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            588999999 7999999999999999999999987543

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=92.95  E-value=0.049  Score=51.94  Aligned_cols=76  Identities=17%  Similarity=0.107  Sum_probs=46.9

Q ss_pred             CceEEEEe-cCchhHHHHHHhccCC--CEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEE
Q 017490          177 GKTVFILG-FGNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  253 (370)
Q Consensus       177 g~tvGIiG-lG~IG~~vA~~l~~~G--~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  253 (370)
                      .++|+|+| .|.+|..++..|...|  .+|..+|+..... ...    ++.  ...............++++.++.||+|
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~-~~~----dL~--~~~~~~~v~~~~~t~d~~~al~gaDvV   80 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPG-VTA----DIS--HMDTGAVVRGFLGQQQLEAALTGMDLI   80 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHH-HHH----HHH--TSCSSCEEEEEESHHHHHHHHTTCSEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHh-HHH----Hhh--cccccceEEEEeCCCCHHHHcCCCCEE
Confidence            36899999 8999999999998777  6899999764310 000    000  000000000000123567889999999


Q ss_pred             EEeccC
Q 017490          254 VCCLSL  259 (370)
Q Consensus       254 ~l~lP~  259 (370)
                      +++.+.
T Consensus        81 i~~ag~   86 (326)
T 1smk_A           81 IVPAGV   86 (326)
T ss_dssp             EECCCC
T ss_pred             EEcCCc
Confidence            999763

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=92.91  E-value=0.086  Score=48.58  Aligned_cols=74  Identities=19%  Similarity=0.186  Sum_probs=47.8

Q ss_pred             CceEEEEec-CchhHHHHHHhccCC-CEEEEEcCCCccccccccccchhhhcccccccccc-ccCCCCCHHHHHhcCCEE
Q 017490          177 GKTVFILGF-GNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVV  253 (370)
Q Consensus       177 g~tvGIiGl-G~IG~~vA~~l~~~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV  253 (370)
                      .++|.|.|. |.||+.+++.|...| ++|.+.+|++.+....     .+.. .+  .+... .....+++.++++.+|+|
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~-----~l~~-~~--~~~~~~D~~d~~~l~~~~~~~d~v   76 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAK-----ELRL-QG--AEVVQGDQDDQVIMELALNGAYAT   76 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHH-----HHHH-TT--CEEEECCTTCHHHHHHHHTTCSEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHH-----HHHH-CC--CEEEEecCCCHHHHHHHHhcCCEE
Confidence            578999997 999999999998888 9999999876441100     0000 00  00000 011224566788899999


Q ss_pred             EEecc
Q 017490          254 VCCLS  258 (370)
Q Consensus       254 ~l~lP  258 (370)
                      +.+.+
T Consensus        77 i~~a~   81 (299)
T 2wm3_A           77 FIVTN   81 (299)
T ss_dssp             EECCC
T ss_pred             EEeCC
Confidence            88765

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=92.91  E-value=0.14  Score=48.60  Aligned_cols=39  Identities=23%  Similarity=0.372  Sum_probs=34.6

Q ss_pred             ccccCceEEEEe-cCchhHHHHHHhcc--CCCEEEEEcCCCc
Q 017490          173 ETLLGKTVFILG-FGNIGVELAKRLRP--FGVKIIATKRSWA  211 (370)
Q Consensus       173 ~~l~g~tvGIiG-lG~IG~~vA~~l~~--~G~~V~~~dr~~~  211 (370)
                      .++.+++|.|.| .|.||+.+++.|..  .|++|++.+|...
T Consensus         6 ~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~   47 (362)
T 3sxp_A            6 DELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRS   47 (362)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCC
T ss_pred             hhcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCc
Confidence            467899999997 59999999999998  8999999998654

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=92.90  E-value=0.097  Score=48.28  Aligned_cols=40  Identities=25%  Similarity=0.310  Sum_probs=35.7

Q ss_pred             ccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          173 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       173 ~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      .+++||++.|.|. |.||+++|+.|...|++|++.+|+...
T Consensus        28 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~   68 (276)
T 3r1i_A           28 FDLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDA   68 (276)
T ss_dssp             GCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGG
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            4689999999995 889999999999999999999987543

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=92.86  E-value=0.23  Score=44.96  Aligned_cols=38  Identities=24%  Similarity=0.405  Sum_probs=33.6

Q ss_pred             ccccCceEEEEec-Cc--hhHHHHHHhccCCCEEEEEcCCC
Q 017490          173 ETLLGKTVFILGF-GN--IGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       173 ~~l~g~tvGIiGl-G~--IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      .++.||++.|.|. |.  ||+++|+.|...|++|++.+|+.
T Consensus         3 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   43 (266)
T 3oig_A            3 FSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGE   43 (266)
T ss_dssp             SCCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             cccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCch
Confidence            3588999999997 55  99999999999999999998864

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=92.85  E-value=0.18  Score=47.15  Aligned_cols=78  Identities=21%  Similarity=0.122  Sum_probs=47.5

Q ss_pred             CceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCCCCHHHHHhcCCEEE
Q 017490          177 GKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVV  254 (370)
Q Consensus       177 g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~  254 (370)
                      +++|.|.| .|.||+.+++.|...|++|.+..|+.......... ..+. .... ...+. ......+++++++.+|+|+
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~-~~~~-~~~~-~~~~~~Dl~d~~~~~~~~~~~D~Vi   85 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHL-LELQ-ELGD-LKIFRADLTDELSFEAPIAGCDFVF   85 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHH-HHHG-GGSC-EEEEECCTTTSSSSHHHHTTCSEEE
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHH-HhcC-CCCc-EEEEecCCCChHHHHHHHcCCCEEE
Confidence            78999999 69999999999999999999887764321000000 0000 0000 00110 1113356788899999988


Q ss_pred             Eec
Q 017490          255 CCL  257 (370)
Q Consensus       255 l~l  257 (370)
                      .+.
T Consensus        86 h~A   88 (338)
T 2rh8_A           86 HVA   88 (338)
T ss_dssp             EES
T ss_pred             EeC
Confidence            654

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=92.83  E-value=0.028  Score=52.98  Aligned_cols=90  Identities=17%  Similarity=0.238  Sum_probs=60.9

Q ss_pred             cCceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccc-ccccC--CCCC-HHHHHhcC
Q 017490          176 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDL-VDEKG--CHED-IFEFASKA  250 (370)
Q Consensus       176 ~g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~-l~ell~~a  250 (370)
                      .|.+|.|+| .|.+|...++.++.+|++|++.++..+. ...              .++ ++...  ...+ +.+.+...
T Consensus       152 ~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~~~~-~~~--------------~~lGa~~~i~~~~~~~~~~~~~g~  216 (321)
T 3tqh_A          152 QGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKRNH-AFL--------------KALGAEQCINYHEEDFLLAISTPV  216 (321)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECHHHH-HHH--------------HHHTCSEEEETTTSCHHHHCCSCE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeccchH-HHH--------------HHcCCCEEEeCCCcchhhhhccCC
Confidence            588999997 9999999999999999999988643211 000              000 11111  1123 55556778


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                      |+|+-++.. +.    . ...++.++++..++.++.
T Consensus       217 D~v~d~~g~-~~----~-~~~~~~l~~~G~iv~~g~  246 (321)
T 3tqh_A          217 DAVIDLVGG-DV----G-IQSIDCLKETGCIVSVPT  246 (321)
T ss_dssp             EEEEESSCH-HH----H-HHHGGGEEEEEEEEECCS
T ss_pred             CEEEECCCc-HH----H-HHHHHhccCCCEEEEeCC
Confidence            999988763 22    2 467788999999998864

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=92.82  E-value=0.058  Score=53.30  Aligned_cols=37  Identities=24%  Similarity=0.216  Sum_probs=33.0

Q ss_pred             ccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          175 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       175 l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      -.|++|.|+|. |.||...++.++..|++|++.+++..
T Consensus       219 ~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~  256 (447)
T 4a0s_A          219 KQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQ  256 (447)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            36899999998 99999999999999999999887543

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=92.81  E-value=0.22  Score=45.04  Aligned_cols=40  Identities=13%  Similarity=0.251  Sum_probs=34.6

Q ss_pred             ccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          173 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       173 ~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      .++.||++.|.|. |.||+++|+.|...|++|++.+|+...
T Consensus         3 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~   43 (257)
T 3tpc_A            3 MQLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPA   43 (257)
T ss_dssp             -CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC-
T ss_pred             cccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHH
Confidence            3578999999996 899999999999999999999987544

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=92.81  E-value=0.072  Score=46.08  Aligned_cols=33  Identities=24%  Similarity=0.360  Sum_probs=30.3

Q ss_pred             eEEEEecCchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      .|.|||.|..|...|..|+..|.+|.++++...
T Consensus         4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~   36 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRG   36 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            499999999999999999999999999997643

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=92.78  E-value=0.27  Score=44.34  Aligned_cols=40  Identities=23%  Similarity=0.354  Sum_probs=35.4

Q ss_pred             cccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          172 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       172 ~~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      ...+.||++.|.|. |.||+++|+.|...|++|++.+|+..
T Consensus         7 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~   47 (252)
T 3f1l_A            7 QDLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEE   47 (252)
T ss_dssp             TTTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             ccccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            34689999999996 78999999999999999999998753

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=92.76  E-value=0.21  Score=45.68  Aligned_cols=30  Identities=20%  Similarity=0.386  Sum_probs=24.5

Q ss_pred             eEEEEec-CchhHHHHHHhccC-CCEEEE-EcC
Q 017490          179 TVFILGF-GNIGVELAKRLRPF-GVKIIA-TKR  208 (370)
Q Consensus       179 tvGIiGl-G~IG~~vA~~l~~~-G~~V~~-~dr  208 (370)
                      +|+|+|+ |.||+.+++.+... |+++.+ +|+
T Consensus         2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~   34 (245)
T 1p9l_A            2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDA   34 (245)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEcc
Confidence            6999996 99999999998754 898764 443

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=92.73  E-value=0.75  Score=46.13  Aligned_cols=32  Identities=25%  Similarity=0.490  Sum_probs=25.6

Q ss_pred             ceEEEEecCchhHHHHHHhcc-CCC---EEEEEcCC
Q 017490          178 KTVFILGFGNIGVELAKRLRP-FGV---KIIATKRS  209 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~-~G~---~V~~~dr~  209 (370)
                      ++|.|||+|.||+.+|+.+.. .++   +|++.|+.
T Consensus        14 ~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~   49 (480)
T 2ph5_A           14 NRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAE   49 (480)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccc
Confidence            358899999999999998864 555   68887754

>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}

Probab=92.73  E-value=0.23  Score=46.17  Aligned_cols=79  Identities=13%  Similarity=0.027  Sum_probs=51.4

Q ss_pred             cccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEE
Q 017490          174 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  253 (370)
Q Consensus       174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  253 (370)
                      ..+|++|++||+-    +..++++..++++.+++++++....+                       ...-+.++++||+|
T Consensus       138 ~~~g~kV~vIG~f----P~i~~~~~~~~~l~V~E~~p~~g~~p-----------------------~~~~~~~lp~~D~v  190 (270)
T 3l5o_A          138 EVKGKKVGVVGHF----PHLESLLEPICDLSILEWSPEEGDYP-----------------------LPASEFILPECDYV  190 (270)
T ss_dssp             TTTTSEEEEESCC----TTHHHHHTTTSEEEEEESSCCTTCEE-----------------------GGGHHHHGGGCSEE
T ss_pred             ccCCCEEEEECCc----hhHHHHHhcCCCEEEEECCCCCCCCC-----------------------hhHHHHhhccCCEE
Confidence            4679999999985    45555666789999999987542100                       12345678888888


Q ss_pred             EEeccCChhhhcccC---HHHHhcCCCCcEEEEcC
Q 017490          254 VCCLSLNKQTAGIVN---KSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       254 ~l~lP~t~~t~~li~---~~~l~~mk~gailIN~s  285 (370)
                      ++.--      -++|   ...|+..|+...+|=+|
T Consensus       191 iiTgs------tlvN~Tl~~lL~~~~~a~~vvl~G  219 (270)
T 3l5o_A          191 YITCA------SVVDKTLPRLLELSRNARRITLVG  219 (270)
T ss_dssp             EEETH------HHHHTCHHHHHHHTTTSSEEEEES
T ss_pred             EEEee------hhhcCCHHHHHhhCCCCCEEEEEC
Confidence            87621      1333   24666677776665554

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=92.71  E-value=0.048  Score=54.40  Aligned_cols=108  Identities=16%  Similarity=0.193  Sum_probs=63.3

Q ss_pred             CceEEEEecCchhHHHHHHhcc----------CCCEEE-EEcCCCccccccccccchhhhccccccccccccCCCCCHHH
Q 017490          177 GKTVFILGFGNIGVELAKRLRP----------FGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFE  245 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~----------~G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e  245 (370)
                      -.+|||+|+|.||+.+++.+..          .+.+|. ++|++..+.                 .........+.++++
T Consensus        10 ~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~-----------------~~~~~~~~~~~d~~e   72 (444)
T 3mtj_A           10 PIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKA-----------------EALAGGLPLTTNPFD   72 (444)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHH-----------------HHHHTTCCEESCTHH
T ss_pred             cccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHh-----------------hhhcccCcccCCHHH
Confidence            3589999999999999876642          456654 456553321                 011111112468889


Q ss_pred             HHh--cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHhCCce
Q 017490          246 FAS--KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLL-DYEAIAHYLECGHLG  305 (370)
Q Consensus       246 ll~--~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~v-d~~aL~~aL~~g~i~  305 (370)
                      ++.  +.|+|+.++|.......+    ..+.++.|.-++..--+... ..++|.++.++....
T Consensus        73 ll~d~diDvVve~tp~~~~h~~~----~~~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv~  131 (444)
T 3mtj_A           73 VVDDPEIDIVVELIGGLEPAREL----VMQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGVM  131 (444)
T ss_dssp             HHTCTTCCEEEECCCSSTTHHHH----HHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HhcCCCCCEEEEcCCCchHHHHH----HHHHHHcCCEEEECCcccCHHHHHHHHHHHHHhCCe
Confidence            986  579999999853222222    23445566666644222222 235788877776654

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=92.69  E-value=0.097  Score=48.53  Aligned_cols=36  Identities=28%  Similarity=0.326  Sum_probs=30.4

Q ss_pred             cCceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          176 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       176 ~g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      .-++|.|.| .|.||+.+++.|...|++|++++|+..
T Consensus        11 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~   47 (321)
T 2pk3_A           11 GSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNE   47 (321)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            346888998 499999999999999999999998754

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=92.68  E-value=0.079  Score=47.96  Aligned_cols=39  Identities=21%  Similarity=0.331  Sum_probs=32.6

Q ss_pred             cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      +--||++.|.|. |.||+++|+.|...|++|++.+|+..+
T Consensus        19 ~~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~   58 (251)
T 3orf_A           19 SHMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENP   58 (251)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCT
T ss_pred             cccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            344789999996 789999999999999999999987654

>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A

Probab=92.61  E-value=0.19  Score=47.58  Aligned_cols=96  Identities=14%  Similarity=0.124  Sum_probs=60.5

Q ss_pred             cccCceEEEEec---CchhHHHHHHhccC-CCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHH
Q 017490          174 TLLGKTVFILGF---GNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFE  245 (370)
Q Consensus       174 ~l~g~tvGIiGl---G~IG~~vA~~l~~~-G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~e  245 (370)
                      .+.|++|++||=   |++.++++..+..+ |++|.+..|..-..  +..          . .+.+.+.+    ...++++
T Consensus       148 ~l~glkva~vGD~~~~rva~Sl~~~~~~~~G~~v~~~~P~~~~~--~~~----------~-~~~~~~~g~~~~~~~d~~e  214 (306)
T 4ekn_B          148 RIDGIKIAFVGDLKYGRTVHSLVYALSLFENVEMYFVSPKELRL--PKD----------I-IEDLKAKNIKFYEKESLDD  214 (306)
T ss_dssp             CSTTCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCC--CHH----------H-HHHHHHTTCCEEEESCGGG
T ss_pred             CcCCCEEEEEcCCCCCcHHHHHHHHHHhcCCCEEEEECCccccc--CHH----------H-HHHHHHcCCEEEEEcCHHH
Confidence            378999999997   58999999999999 99999987632110  000          0 00111111    2368899


Q ss_pred             HHhcCCEEEEecc------CChhh-----hcccCHHHHhcCCCCcEEEEc
Q 017490          246 FASKADVVVCCLS------LNKQT-----AGIVNKSFLSSMKKGSLLVNI  284 (370)
Q Consensus       246 ll~~aDiV~l~lP------~t~~t-----~~li~~~~l~~mk~gailIN~  284 (370)
                      .++.+|+|....-      ...+.     .+-++.+.++.  ++++|.-+
T Consensus       215 av~~aDvvy~~~~q~er~~~~~e~~~~~~~y~v~~~~l~~--~~ai~mH~  262 (306)
T 4ekn_B          215 LDDDIDVLYVTRIQKERFPDPNEYEKVKGSYKIKREYVEG--KKFIIMHP  262 (306)
T ss_dssp             CCTTCSEEEECCCCGGGCCSHHHHHHHHHHHCBCHHHHTT--CCCEEECC
T ss_pred             HhcCCCEEEeCCcccccCCCHHHHHHhccCcEECHHHHcC--CCCEEECC
Confidence            9999999986421      10111     13456666665  66666655

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=92.60  E-value=0.078  Score=47.73  Aligned_cols=35  Identities=26%  Similarity=0.292  Sum_probs=30.3

Q ss_pred             ceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          178 KTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       178 ~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      |++.|.|. |.||+++|+.|...|++|++.+|+..+
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~   37 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAE   37 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchh
Confidence            46888885 899999999999999999999987543

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=92.57  E-value=0.17  Score=46.42  Aligned_cols=61  Identities=23%  Similarity=0.305  Sum_probs=43.1

Q ss_pred             ceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhc--CCEEE
Q 017490          178 KTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK--ADVVV  254 (370)
Q Consensus       178 ~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~  254 (370)
                      ++|.|.|. |.||+.+++.|. .|++|++.+|+....  .              .+.    ...++++++++.  +|+|+
T Consensus         1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~~~--~--------------~D~----~d~~~~~~~~~~~~~d~vi   59 (299)
T 1n2s_A            1 MNILLFGKTGQVGWELQRSLA-PVGNLIALDVHSKEF--C--------------GDF----SNPKGVAETVRKLRPDVIV   59 (299)
T ss_dssp             CEEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCSSS--C--------------CCT----TCHHHHHHHHHHHCCSEEE
T ss_pred             CeEEEECCCCHHHHHHHHHhh-cCCeEEEeccccccc--c--------------ccC----CCHHHHHHHHHhcCCCEEE
Confidence            36889996 999999999999 799999999864210  0              001    012346677776  99988


Q ss_pred             EeccC
Q 017490          255 CCLSL  259 (370)
Q Consensus       255 l~lP~  259 (370)
                      .+...
T Consensus        60 h~a~~   64 (299)
T 1n2s_A           60 NAAAH   64 (299)
T ss_dssp             ECCCC
T ss_pred             ECccc
Confidence            77543

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=92.54  E-value=0.12  Score=48.44  Aligned_cols=81  Identities=22%  Similarity=0.092  Sum_probs=46.8

Q ss_pred             ccCceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCCCCHHHHHhcCCE
Q 017490          175 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADV  252 (370)
Q Consensus       175 l~g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDi  252 (370)
                      +.|++|.|.| .|.||+.+++.|...|++|++..|+.......... ..+...... ..... ......+++++++.+|+
T Consensus         3 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~~~-~~~~~~Dl~d~~~~~~~~~~~d~   80 (337)
T 2c29_D            3 SQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHL-LDLPKAETH-LTLWKADLADEGSFDEAIKGCTG   80 (337)
T ss_dssp             ---CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHHH-HTSTTHHHH-EEEEECCTTSTTTTHHHHTTCSE
T ss_pred             CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHHHHH-HhcccCCCe-EEEEEcCCCCHHHHHHHHcCCCE
Confidence            4678999999 79999999999999999999888765421000000 000000000 00110 11133567888999998


Q ss_pred             EEEec
Q 017490          253 VVCCL  257 (370)
Q Consensus       253 V~l~l  257 (370)
                      |+.+.
T Consensus        81 Vih~A   85 (337)
T 2c29_D           81 VFHVA   85 (337)
T ss_dssp             EEECC
T ss_pred             EEEec
Confidence            87654

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=92.51  E-value=0.12  Score=48.78  Aligned_cols=38  Identities=26%  Similarity=0.325  Sum_probs=33.8

Q ss_pred             ccCceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          175 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       175 l~g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      +.+++|.|.| .|.||+.+++.|...|++|++++|+...
T Consensus         7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~   45 (357)
T 1rkx_A            7 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPT   45 (357)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSS
T ss_pred             hCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcc
Confidence            5688999999 5999999999999999999999987543

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=92.49  E-value=0.14  Score=47.76  Aligned_cols=72  Identities=17%  Similarity=0.164  Sum_probs=45.3

Q ss_pred             ceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCCCCHHHHHhcCCEEEE
Q 017490          178 KTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVVC  255 (370)
Q Consensus       178 ~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~l  255 (370)
                      ++|.|.|. |.||+.+++.|...|++|++++|+..........        +  ..... .....++++++++.+|+|+.
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~--------~--~~~~~~Dl~d~~~~~~~~~~~d~vih   83 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYL--------E--PECRVAEMLDHAGLERALRGLDGVIF   83 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGG--------C--CEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccC--------C--eEEEEecCCCHHHHHHHHcCCCEEEE
Confidence            48999994 9999999999999999999999875442100000        0  00000 00122346677889999987


Q ss_pred             eccC
Q 017490          256 CLSL  259 (370)
Q Consensus       256 ~lP~  259 (370)
                      +...
T Consensus        84 ~a~~   87 (342)
T 2x4g_A           84 SAGY   87 (342)
T ss_dssp             C---
T ss_pred             CCcc
Confidence            7653

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=92.49  E-value=0.084  Score=48.87  Aligned_cols=41  Identities=24%  Similarity=0.184  Sum_probs=33.0

Q ss_pred             CcccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          171 TGETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       171 ~~~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      ....+.||++.|.|. |.||+++|+.|...|++|++.+|+..
T Consensus        22 ~m~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~   63 (283)
T 3v8b_A           22 SMMNQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRT   63 (283)
T ss_dssp             -----CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             hhcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            345789999999996 78999999999999999999998754

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=92.46  E-value=0.38  Score=51.35  Aligned_cols=99  Identities=17%  Similarity=0.248  Sum_probs=65.2

Q ss_pred             cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHH-----
Q 017490          174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA-----  247 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-----  247 (370)
                      --.|.+|.|.|. |.+|....+.++.+|++|++.+...+.. ... .      .   .+..+..  ...++.+.+     
T Consensus       343 l~~G~~VLI~gaaGgvG~~aiqlAk~~Ga~V~~t~~~~k~~-~l~-l------g---a~~v~~~--~~~~~~~~i~~~t~  409 (795)
T 3slk_A          343 LRPGESLLVHSAAGGVGMAAIQLARHLGAEVYATASEDKWQ-AVE-L------S---REHLASS--RTCDFEQQFLGATG  409 (795)
T ss_dssp             CCTTCCEEEESTTBHHHHHHHHHHHHTTCCEEEECCGGGGG-GSC-S------C---GGGEECS--SSSTHHHHHHHHSC
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeChHHhh-hhh-c------C---hhheeec--CChhHHHHHHHHcC
Confidence            346899999996 9999999999999999999988654221 000 0      0   0000100  112444433     


Q ss_pred             -hcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccC
Q 017490          248 -SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLD  291 (370)
Q Consensus       248 -~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd  291 (370)
                       ...|+|+.++..  +   .+ ...++.++++..+|.++.....+
T Consensus       410 g~GvDvVld~~gg--~---~~-~~~l~~l~~~Gr~v~iG~~~~~~  448 (795)
T 3slk_A          410 GRGVDVVLNSLAG--E---FA-DASLRMLPRGGRFLELGKTDVRD  448 (795)
T ss_dssp             SSCCSEEEECCCT--T---TT-HHHHTSCTTCEEEEECCSTTCCC
T ss_pred             CCCeEEEEECCCc--H---HH-HHHHHHhcCCCEEEEeccccccC
Confidence             248999998753  1   22 67889999999999998655443

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=92.46  E-value=0.13  Score=47.28  Aligned_cols=40  Identities=28%  Similarity=0.326  Sum_probs=35.7

Q ss_pred             ccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          173 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       173 ~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      ..+.||++.|.|. |.||+++|+.|...|++|++.+|+...
T Consensus        29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~   69 (275)
T 4imr_A           29 FGLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGS   69 (275)
T ss_dssp             HCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTT
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence            4689999999996 789999999999999999999987654

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=92.46  E-value=0.085  Score=53.18  Aligned_cols=113  Identities=19%  Similarity=0.188  Sum_probs=68.2

Q ss_pred             CceEEEEecCchhHH-HHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEE
Q 017490          177 GKTVFILGFGNIGVE-LAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  255 (370)
Q Consensus       177 g~tvGIiGlG~IG~~-vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  255 (370)
                      .++|.|||+|.+|.+ +|+.|+..|++|.++|....+....      +.      ...+.-... .+. +.+..+|+|+.
T Consensus        22 ~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~------l~------~~gi~~~~g-~~~-~~~~~~d~vV~   87 (494)
T 4hv4_A           22 VRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQH------LT------ALGAQIYFH-HRP-ENVLDASVVVV   87 (494)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHH------HH------HTTCEEESS-CCG-GGGTTCSEEEE
T ss_pred             CCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHHH------HH------HCCCEEECC-CCH-HHcCCCCEEEE
Confidence            579999999999996 8999999999999999764321000      00      000100001 122 33567999987


Q ss_pred             e--ccC-Chhh-----hc--ccCH-HHHhc-CCCC-cEEEEcCCCcccCHHHHHHHHHhCC
Q 017490          256 C--LSL-NKQT-----AG--IVNK-SFLSS-MKKG-SLLVNIARGGLLDYEAIAHYLECGH  303 (370)
Q Consensus       256 ~--lP~-t~~t-----~~--li~~-~~l~~-mk~g-ailIN~sRg~~vd~~aL~~aL~~g~  303 (370)
                      .  +|. +|..     ++  ++.+ +.|.. ++.. .+-|--+.|..-...-+...|+...
T Consensus        88 Spgi~~~~p~~~~a~~~gi~v~~~~e~l~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g  148 (494)
T 4hv4_A           88 STAISADNPEIVAAREARIPVIRRAEMLAELMRYRHGIAVAGTHGKTTTTAMLSSIYAEAG  148 (494)
T ss_dssp             CTTSCTTCHHHHHHHHTTCCEEEHHHHHHHHHTTSEEEEEECSSSHHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHHHCCCCEEcHHHHHHHHhcCCCEEEEecCCChHHHHHHHHHHHHhcC
Confidence            6  443 2221     11  2332 33333 3332 4556666899888888888888754

>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*

Probab=92.46  E-value=0.4  Score=45.74  Aligned_cols=93  Identities=8%  Similarity=-0.049  Sum_probs=60.5

Q ss_pred             cccCceEEE-----EecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHh
Q 017490          174 TLLGKTVFI-----LGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS  248 (370)
Q Consensus       174 ~l~g~tvGI-----iGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  248 (370)
                      .+. .+|++     +|=+++.++++..+..+|++|....|..-..  +              ...........++++.++
T Consensus       166 ~l~-l~ia~a~~~~vGD~rva~Sl~~~~~~~G~~v~~~~P~~~~~--~--------------~~~~~~~~~~~d~~eav~  228 (324)
T 1js1_X          166 RPK-VVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYEL--D--------------PKFVGNARVEYDQMKAFE  228 (324)
T ss_dssp             SCE-EEEECCCCSSCCCSHHHHHHHHHHHTSSSEEEEECCTTCCC--C--------------HHHHTTCEEESCHHHHHT
T ss_pred             Cee-EEEEEEcccccCCcchHHHHHHHHHHCCCEEEEeCCcccCC--C--------------hhhccceEEECCHHHHhC
Confidence            467 89999     9999999999999999999999987643211  0              001001112468999999


Q ss_pred             cCCEEEEeccCC--h---------hhhcccCHHHHhcCCCCcEEEEc
Q 017490          249 KADVVVCCLSLN--K---------QTAGIVNKSFLSSMKKGSLLVNI  284 (370)
Q Consensus       249 ~aDiV~l~lP~t--~---------~t~~li~~~~l~~mk~gailIN~  284 (370)
                      .+|+|..-.=..  .         .....++.+.++.+| +++|.-+
T Consensus       229 ~aDvvy~~~w~s~g~~~~~~~~~r~~~y~vt~e~l~~a~-~ai~MHc  274 (324)
T 1js1_X          229 GADFIYAKNWAAYTGDNYGQILSTDRNWTVGDRQMAVTN-NAYFMHC  274 (324)
T ss_dssp             TCSEEEECCCCCCSTTCTTCCCCCCTTSSBCHHHHTTSS-SCEEECC
T ss_pred             CCCEEEecCcccCCCccccchHHHhcCcccCHHHHHhcC-CcEEECC
Confidence            999998732211  0         012345666666666 6666544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	370
d2naca1	188	c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudom	9e-27
d1gdha1	191	c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyp	3e-26
d1sc6a1	188	c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase	4e-24
d1ygya1	184	c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase	7e-23
d1mx3a1	193	c.2.1.4 (A:126-318) Transcription corepressor CtbP	3e-21
d1dxya1	199	c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydro	2e-13
d1j4aa2	134	c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogen	3e-12
d1j4aa1	197	c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lacto	1e-11
d1qp8a1	181	c.2.1.4 (A:83-263) Putative formate dehydrogenase	1e-10
d1qp8a2	121	c.23.12.1 (A:1-82,A:264-302) Putative formate dehy	2e-09
d1mx3a2	133	c.23.12.1 (A:27-125,A:319-352) Transcription corep	5e-08
d1gdha2	129	c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrog	7e-07
d1dxya2	131	c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproa	1e-06
d2naca2	186	c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenas	2e-06
d1sc6a2	132	c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate deh	3e-06
d1ygya2	130	c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehy	3e-06
d1np3a2	182	c.2.1.6 (A:1-182) Class I ketol-acid reductoisomer	2e-04
d1li4a1	163	c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolas	3e-04
d1hwxa1	293	c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (	3e-04
d1pjqa1	113	c.2.1.11 (A:1-113) Siroheme synthase CysG, domain	0.002
d1c1da1	201	c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {R	0.003

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score =  103 bits (256), Expect = 9e-27
 Identities = 53/203 (26%), Positives = 78/203 (38%), Gaps = 20/203 (9%)

Query: 139 SCAELTIYLMLGLLRK----QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAK 194
           S AE  + ++L L+R         R         V     L    V  +  G IG+ + +
Sbjct: 2   SVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLR 61

Query: 195 RLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 254
           RL PF V +  T R     S     +                   H    +     DVV 
Sbjct: 62  RLAPFDVHLHYTDRHRLPESVEKELNLT----------------WHATREDMYPVCDVVT 105

Query: 255 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWT 314
               L+ +T  ++N   L   K+G+ +VN ARG L D +A+A  LE G L G   DV + 
Sbjct: 106 LNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFP 165

Query: 315 EPFDPNDPILKFKNVLITPHVGG 337
           +P   + P        +TPH+ G
Sbjct: 166 QPAPKDHPWRTMPYNGMTPHISG 188

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 191

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score =  101 bits (253), Expect = 3e-26
 Identities = 57/204 (27%), Positives = 86/204 (42%), Gaps = 22/204 (10%)

Query: 139 SCAELTIYLMLGLLRKQNEMRMAIEQKK-----LGVPTGETLLGKTVFILGFGNIGVELA 193
           + AE+ + L+LG  R+  E    I  +           GE L  KT+ I GFG+IG  LA
Sbjct: 4   ATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALA 63

Query: 194 KRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 253
           KR + F + I       AS S  +                  +   H+ +    S +   
Sbjct: 64  KRAQGFDMDIDYFDTHRASSSDEASY----------------QATFHDSLDSLLSVSQFF 107

Query: 254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW 313
                   +T    NK+ + S+ +G+++VN ARG L+D E +   LE G L   G DV  
Sbjct: 108 SLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFA 167

Query: 314 TEPFDPNDPILKFKNVLITPHVGG 337
            EP + N+      N  + PH+G 
Sbjct: 168 GEP-NINEGYYDLPNTFLFPHIGS 190

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 95.8 bits (237), Expect = 4e-24
 Identities = 59/208 (28%), Positives = 88/208 (42%), Gaps = 26/208 (12%)

Query: 136 NAASCAELTIYLMLGLLRKQNEMRMAIEQK--KLGVPTGETLLGKTVFILGFGNIGVELA 193
           N  S AEL I  +L LLR   E      +              GK + I+G+G+IG +L 
Sbjct: 1   NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLG 60

Query: 194 KRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 253
                 G+ +             +                       + + +  + +DVV
Sbjct: 61  ILAESLGMYVYFYDIENKLPLGNAT--------------------QVQHLSDLLNMSDVV 100

Query: 254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW 313
              +  N  T  ++    +S MK GSLL+N +RG ++D  A+A  L   HL G  IDV  
Sbjct: 101 SLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFP 160

Query: 314 TEPFDPND----PILKFKNVLITPHVGG 337
           TEP   +D    P+ +F NVL+TPH+GG
Sbjct: 161 TEPATNSDPFTSPLAEFDNVLLTPHIGG 188

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 92.3 bits (228), Expect = 7e-23
 Identities = 60/203 (29%), Positives = 98/203 (48%), Gaps = 21/203 (10%)

Query: 136 NAASCAELTIYLMLGLLRKQNEMRMAIEQK--KLGVPTGETLLGKTVFILGFGNIGVELA 193
           N  S AE  + L+L   R+      ++ +   K    +G  + GKTV ++G G IG  +A
Sbjct: 1   NIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVA 60

Query: 194 KRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 253
           +R+  FG  ++A                   V       L  E    +D+    ++AD +
Sbjct: 61  QRIAAFGAYVVAYDPY---------------VSPARAAQLGIELLSLDDLL---ARADFI 102

Query: 254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW 313
              L    +TAG+++K  L+  K G ++VN ARGGL+D  A+A  +  GH+   G+DV  
Sbjct: 103 SVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFA 162

Query: 314 TEPFDPNDPILKFKNVLITPHVG 336
           TEP   + P+ +   V++TPH+G
Sbjct: 163 TEPC-TDSPLFELAQVVVTPHLG 184

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 193

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score = 88.2 bits (217), Expect = 3e-21
 Identities = 49/208 (23%), Positives = 89/208 (42%), Gaps = 27/208 (12%)

Query: 139 SCAELTIYLMLGLLRKQNEMRMAI---------EQKKLGVPTGETLLGKTVFILGFGNIG 189
             A+ T+  +L L R+   +  A+         EQ +        + G+T+ I+G G +G
Sbjct: 2   ETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVG 61

Query: 190 VELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK 249
             +A R + FG  ++      +   + +                         + +    
Sbjct: 62  QAVALRAKAFGFNVLFYDPYLSDGVERALGLQ-----------------RVSTLQDLLFH 104

Query: 250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGI 309
           +D V     LN+    ++N   +  M++G+ LVN ARGGL+D +A+A  L+ G + G  +
Sbjct: 105 SDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAAL 164

Query: 310 DVAWTEPFDPND-PILKFKNVLITPHVG 336
           DV  +EPF  +  P+    N++ TPH  
Sbjct: 165 DVHESEPFSFSQGPLKDAPNLICTPHAA 192

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 199

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 66.0 bits (159), Expect = 2e-13
 Identities = 52/216 (24%), Positives = 93/216 (43%), Gaps = 36/216 (16%)

Query: 138 ASCAELTIYLMLGLLRKQNEMRMAIEQ---KKLGVPTGETLLGKTVFILGFGNIGVELAK 194
           A+ AE  +   L LLR   +++  ++    +K G   G+ L  +TV ++G G+IG    K
Sbjct: 3   AAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIK 62

Query: 195 RLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 254
             + FG K+IA                                  +  + +   ++DV+ 
Sbjct: 63  LFKGFGAKVIAYDPYPMKGDHPDF--------------------DYVSLEDLFKQSDVID 102

Query: 255 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWT 314
             +   +Q   I+N++  + MK G++++N AR  L+D +A+   L+ G L G+GID    
Sbjct: 103 LHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEY 162

Query: 315 EPFDPN-------------DPILKFKNVLITPHVGG 337
           E  D               D +L   NV+++PH+  
Sbjct: 163 ETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAY 198

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 61.1 bits (148), Expect = 3e-12
 Identities = 16/126 (12%), Positives = 41/126 (32%), Gaps = 13/126 (10%)

Query: 37  TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYH----LCVVKTMRLDS 92
           T++            + KE+   +  ++V+       P+ +A       + V + +   +
Sbjct: 1   TKIFAYAIR-EDEKPFLKEWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIA 59

Query: 93  NCISRANQMKLIM--QFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLG 150
             +       +       VG++ +D+  A   G ++  +P        S     +  M+ 
Sbjct: 60  ETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPV------YSYTTHAVRNMVV 113

Query: 151 LLRKQN 156
                N
Sbjct: 114 KAFDNN 119

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 197

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 61.0 bits (146), Expect = 1e-11
 Identities = 39/213 (18%), Positives = 78/213 (36%), Gaps = 34/213 (15%)

Query: 139 SCAELTIYLMLGLLRKQNEMRMAIEQK--KLGVPTGETLLGKTVFILGFGNIGVELAKRL 196
           + AE        +LR+   M   + +   +     G  +  + V ++G G+IG    + +
Sbjct: 3   AIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIM 62

Query: 197 RPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 256
             FG K+I          +                         + + +   +ADV+   
Sbjct: 63  EGFGAKVITYDIFRNPELEKKGY-------------------YVDSLDDLYKQADVISLH 103

Query: 257 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEP 316
           +        ++N   ++ MK+  ++VN++RG L+D +A+   L+ G + G  +DV   E 
Sbjct: 104 VPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEV 163

Query: 317 -------------FDPNDPILKFKNVLITPHVG 336
                              ++   NVL+TP   
Sbjct: 164 GIFNEDWEGKEFPDARLADLIARPNVLVTPKTA 196

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 57.9 bits (138), Expect = 1e-10
 Identities = 38/202 (18%), Positives = 68/202 (33%), Gaps = 22/202 (10%)

Query: 137 AASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL 196
           A + AE  + L+L   ++  +    +++                     G+ G ++   L
Sbjct: 1   ADAVAEFALALLLAPYKRIIQYGEKMKR---------------------GDYGRDVEIPL 39

Query: 197 RPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 256
                  +       +       +    V+                + E   +A   VC 
Sbjct: 40  IQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEGPWRFTNSLEEALREARAAVCA 99

Query: 257 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE- 315
           L LNK T G+V    L+ M + ++ VN+ R  +LD + +   L+         DV W   
Sbjct: 100 LPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRN 159

Query: 316 PFDPNDPILKFKNVLITPHVGG 337
            F  +       NV+ TP V G
Sbjct: 160 DFAKDAEFFSLPNVVATPWVAG 181

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 121

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 53.1 bits (127), Expect = 2e-09
 Identities = 16/134 (11%), Positives = 37/134 (27%), Gaps = 32/134 (23%)

Query: 70  ISDVPDVIANYHL---CVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKV 126
           +     ++    L         R+ +  +++  ++K I     GL+ +   +     + V
Sbjct: 17  LRKYFKIVRGGDLGNVEAALVSRITAEELAKMPRLKFIQVVTAGLDHLPWESIPP-HVTV 75

Query: 127 ARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFG 186
           A   G    N      +   +++  +R                          +     G
Sbjct: 76  AGNAG---SNGYGNERVWRQMVMEAVR-------------------------NLITYATG 107

Query: 187 NIGVELAKRLRPFG 200
                +AKR    G
Sbjct: 108 GRPRNIAKREDYIG 121

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 133

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score = 49.2 bits (117), Expect = 5e-08
 Identities = 14/73 (19%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 82  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 141
             +  T+ L    + +   +++I++ G G + +DI +A   GI V  +P      +    
Sbjct: 47  ALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVP----AASVYSE 102

Query: 142 ELTIYLMLGLLRK 154
           + +I +     R+
Sbjct: 103 QASIEMREEAARE 115

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 129

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score = 45.8 bits (108), Expect = 7e-07
 Identities = 15/75 (20%), Positives = 25/75 (33%)

Query: 82  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 141
           L  +               +K I  + +G + +D++A    GIKV   P   T      A
Sbjct: 49  LITLNEKCRKEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGATQAREDMA 108

Query: 142 ELTIYLMLGLLRKQN 156
                L+  L    +
Sbjct: 109 HQANDLIDALFGGAD 123

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 131

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 45.1 bits (106), Expect = 1e-06
 Identities = 10/113 (8%), Positives = 36/113 (31%), Gaps = 9/113 (7%)

Query: 57  LQNYPSIQVDVVPISDVPDV---IANYH-LCVVKTMRLDSNCISRANQMKLI--MQFGVG 110
                   ++        +       +  +  ++T    +    + +   +       VG
Sbjct: 19  WAKDTGNTLEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVG 78

Query: 111 LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIE 163
            + +D+ A  + GI+++ +P        +   +  + +  L+    +   + E
Sbjct: 79  TDNIDMTAMKQYGIRLSNVPA---YTETAVHNMVYFSLQHLVDFLTKGETSTE 128

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score = 45.3 bits (107), Expect = 2e-06
 Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 7/80 (8%)

Query: 70  ISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARI 129
           + D   VI+           L    I++A  +KL +  G+G + VD+ +A    + VA +
Sbjct: 87  LVDADVVISQPFWPAY----LTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEV 142

Query: 130 PGDVTGNAASCAELTIYLML 149
                 N+ +      Y   
Sbjct: 143 TY---CNSTTLTAQARYAAG 159

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 43.9 bits (103), Expect = 3e-06
 Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 14/135 (10%)

Query: 33  DKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPIS----DVPDVIANYHLCVVKTM 88
           +K+  + L         H    E L+      ++    +     + + I + H   +++ 
Sbjct: 1   EKDKIKFLLVEG----VHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSR 56

Query: 89  RL-DSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 147
                + I+ A ++  I  F +G   VD++AA + GI V   P   T       E     
Sbjct: 57  THLTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSSTQ---EAQENIGLE 113

Query: 148 MLGLLRKQ--NEMRM 160
           + G L K   N   +
Sbjct: 114 VAGKLIKYSDNGSTL 128

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 130

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 44.0 bits (103), Expect = 3e-06
 Identities = 20/108 (18%), Positives = 44/108 (40%), Gaps = 7/108 (6%)

Query: 63  IQVDVVPISDVPDVIA---NYHLCVVKTMRLDSNCI-SRANQMKLIMQFGVGLEGVDINA 118
           ++V  V   D   ++A        +V++       + + A ++K++ + GVGL+ VD++A
Sbjct: 23  VEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDA 82

Query: 119 ATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKK 166
           AT  G+ V   P      + + A+      +    +       +    
Sbjct: 83  ATARGVLVVNAPTS---ASTAEAQDRAGTDVAESVRLALAGEFVPDAV 127

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 18/123 (14%)

Query: 173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDD 232
             + GK V I+G+G+ G   A  L+  GV +    RS  S +    ++  L V +     
Sbjct: 12  SIIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSG-SATVAKAEAHGLKVAD----- 65

Query: 233 LVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDY 292
                     +    + AD VV  L+ ++    +  +    ++KKG+ L   A G  + Y
Sbjct: 66  ----------VKTAVAAAD-VVMILTPDEFQGRLYKEEIEPNLKKGATLA-FAHGFSIHY 113

Query: 293 EAI 295
             +
Sbjct: 114 NQV 116

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 163

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (90), Expect = 3e-04
 Identities = 22/129 (17%), Positives = 46/129 (35%), Gaps = 22/129 (17%)

Query: 171 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGII 230
           T   + GK   + G+G++G   A+ LR FG ++I T+    +  Q + +   +   +   
Sbjct: 18  TDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMD--- 74

Query: 231 DDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNI-ARGGL 289
                         E   + ++ V           I+       MK  +++ NI      
Sbjct: 75  --------------EACQEGNIFVTTT----GCIDIILGRHFEQMKDDAIVCNIGHFDVE 116

Query: 290 LDYEAIAHY 298
           +D + +   
Sbjct: 117 IDVKWLNEN 125

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} Length = 293

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.7 bits (92), Expect = 3e-04
 Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 8/105 (7%)

Query: 158 MRMAIEQKKLGVPTG--ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT---KRSWAS 212
           +   IE        G       KT  + GFGN+G+   + L  FG K +A      S  +
Sbjct: 15  IENFIENASYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWN 74

Query: 213 HSQVSCQSS-ALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 256
              +  +      +++G I      K     I E     D+++  
Sbjct: 75  PDGIDPKELEDFKLQHGTILGFPKAKIYEGSILE--VDCDILIPA 117

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} Length = 113

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

 Score = 35.1 bits (80), Expect = 0.002
 Identities = 14/111 (12%), Positives = 33/111 (29%), Gaps = 17/111 (15%)

Query: 175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV 234
           L  +   I+G G++    A+ L   G ++     ++                        
Sbjct: 10  LRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFT----------------VWA 53

Query: 235 DEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA 285
           +E         F  +  +  C L++       VN+    + +   +  N+ 
Sbjct: 54  NEGMLTLVEGPF-DETLLDSCWLAIAATDDDTVNQRVSDAAESRRIFCNVV 103

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} Length = 201

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

 Score = 35.9 bits (82), Expect = 0.003
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 5/47 (10%)

Query: 158 MRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 204
           M+  +  + LG     +L G TV + G G +G  LA      G +++
Sbjct: 13  MKATVAHRGLG-----SLDGLTVLVQGLGAVGGSLASLAAEAGAQLL 54

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	370
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	100.0
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	100.0
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	100.0
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	100.0
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	100.0
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	100.0
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	100.0
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	100.0
d1ygya2	130	Phosphoglycerate dehydrogenase {Mycobacterium tube	99.88
d1dxya2	131	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	99.84
d1qp8a2	121	Putative formate dehydrogenase {Archaeon Pyrobacul	99.83
d1sc6a2	132	Phosphoglycerate dehydrogenase {Escherichia coli [	99.81
d1j4aa2	134	D-lactate dehydrogenase {Lactobacillus helveticus	99.8
d1gdha2	129	D-glycerate dehydrogenase {Hyphomicrobium methylov	99.76
d2naca2	186	Formate dehydrogenase {Pseudomonas sp., strain 101	99.76
d1mx3a2	133	Transcription corepressor CtbP {Human (Homo sapien	99.75
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	99.57
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.47
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.37
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.37
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	99.28
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	99.23
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	99.22
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	99.1
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	98.94
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	98.85
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	98.84
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	98.84
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.73
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.66
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	98.61
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.59
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.53
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	98.51
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	98.48
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	98.29
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	98.18
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	98.15
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	98.13
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	98.06
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	98.03
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	98.03
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.98
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.95
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	97.95
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	97.88
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	97.83
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	97.82
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	97.77
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.76
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	97.69
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.68
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.55
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.53
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.47
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.44
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	97.41
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	97.31
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.27
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	97.27
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.17
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.16
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	97.13
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	97.12
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.11
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.1
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.09
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	97.05
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	96.99
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	96.98
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	96.96
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	96.95
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.89
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	96.87
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	96.81
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.77
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.74
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.69
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	96.69
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	96.68
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.66
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	96.57
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	96.54
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.48
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.43
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	96.43
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	96.39
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	96.39
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	96.37
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.36
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.27
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	96.13
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.05
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	96.04
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	96.03
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	96.02
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.0
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	95.79
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	95.73
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	95.66
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	95.64
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	95.62
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.62
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.59
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	95.53
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	95.52
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	95.48
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.47
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	95.39
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	95.35
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	95.33
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	95.31
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	95.26
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.24
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.23
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.23
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	95.23
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	95.19
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.15
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.14
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	95.09
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.08
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	95.08
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	94.81
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	94.8
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	94.8
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	94.79
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	94.77
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	94.74
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	94.72
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	94.69
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	94.64
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	94.58
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	94.57
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	94.56
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	94.49
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	94.49
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	94.46
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	94.46
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	94.45
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.34
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	94.33
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	94.32
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	94.3
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.3
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	94.29
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	94.21
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	94.2
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	94.16
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	94.06
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	94.03
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.03
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	94.0
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	93.92
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	93.85
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	93.82
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	93.76
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	93.67
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	93.64
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	93.63
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	93.59
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	93.55
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	93.51
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	93.5
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	93.49
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.48
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	93.45
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	93.4
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	93.38
d1l7da2	194	Nicotinamide nucleotide transhydrogenase dI compon	93.33
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	93.26
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	93.23
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	93.09
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	93.07
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	93.01
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	92.99
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	92.95
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	92.85
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	92.84
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	92.83
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	92.82
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	92.73
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	92.7
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	92.69
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	92.65
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	92.61
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	92.49
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	92.41
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	92.39
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	92.36
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	92.34
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	92.32
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	92.3
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	92.29
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	92.26
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	92.24
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	92.2
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	92.02
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	91.96
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	91.94
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	91.93
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	91.82
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	91.79
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	91.76
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	91.74
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	91.72
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	91.68
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	91.59
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	91.49
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	91.46
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	91.4
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	91.35
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	91.26
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	91.24
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	91.02
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	91.01
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	91.01
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	91.0
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	90.98
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	90.86
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	90.85
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	90.8
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	90.72
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	90.7
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	90.59
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	90.54
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	90.5
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	90.46
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	90.45
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	90.39
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	90.3
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	90.3
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	90.26
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	90.12
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	90.11
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	90.06
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	89.93
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	89.85
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	89.82
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	89.6
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	89.54
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	89.51
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	89.48
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	89.47
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	89.3
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	89.25
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	89.03
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	88.99
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	88.78
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	88.62
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	88.57
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	88.43
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	88.43
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	88.36
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	88.24
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	88.17
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	88.14
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	88.12
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	88.1
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	88.0
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	87.7
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	87.64
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	87.6
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	87.46
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	87.38
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	87.13
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	87.01
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	86.99
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	86.82
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	86.46
d2qwxa1	230	Quinone reductase type 2 (menadione reductase) {Hu	86.41
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	86.25
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	85.78
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	85.77
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	85.72
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	85.6
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	85.59
d1pjca2	193	L-alanine dehydrogenase {Phormidium lapideum [TaxI	85.47
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	85.46
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	85.36
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	85.21
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	85.06
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	84.86
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	84.56
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	84.39
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	84.25
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	84.17
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	84.1
d1tuga1	310	Aspartate carbamoyltransferase catalytic subunit {	83.98
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	83.94
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	83.82
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	83.82
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	83.74
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	83.64
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	83.32
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	83.25
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	83.19
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	83.11
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	83.11
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	82.96
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	82.83
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	82.72
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	82.64
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	82.31
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	81.93
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	81.92
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	81.86
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	81.58
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	81.2
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	80.5
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	80.28

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=2.7e-52  Score=372.44  Aligned_cols=182  Identities=30%  Similarity=0.488  Sum_probs=166.6

Q ss_pred             CchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC--CCcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccc
Q 017490          136 NAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH  213 (370)
Q Consensus       136 na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~--~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~  213 (370)
                      |+.+||||++++||++.|++..+++.++++.|..  ..+.++.|+++||+|+|.||+.+|+++++|||+|++||++..+.
T Consensus         1 N~~sVAE~~~~liL~~~R~i~~~~~~~~~~~W~~~~~~~~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~   80 (184)
T d1ygya1           1 NIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPA   80 (184)
T ss_dssp             SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGGCCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHH
T ss_pred             CchHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCccccccccccceeeeeccccchhHHHHHHhhhccceEEeecCCCChh
Confidence            6789999999999999999999999999999964  46789999999999999999999999999999999999876541


Q ss_pred             cccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHH
Q 017490          214 SQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYE  293 (370)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~  293 (370)
                      .                  .........++++++++||+|++|||+|++|+++||++.|++||+|++|||+|||++||++
T Consensus        81 ~------------------~~~~~~~~~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVde~  142 (184)
T d1ygya1          81 R------------------AAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEA  142 (184)
T ss_dssp             H------------------HHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHH
T ss_pred             H------------------HhhcCceeccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhhhH
Confidence            1                  0111113468999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceEEccCCC
Q 017490          294 AIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVG  336 (370)
Q Consensus       294 aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia  336 (370)
                      ||+++|++|+|+||+||||++||++ ++|||++|||++|||+|
T Consensus       143 aL~~aL~~~~i~~a~lDV~~~EP~~-~~~l~~~~nviiTPHIG  184 (184)
T d1ygya1         143 ALADAITGGHVRAAGLDVFATEPCT-DSPLFELAQVVVTPHLG  184 (184)
T ss_dssp             HHHHHHHTSSEEEEEESSCSSSSCS-CCGGGGCTTEEECSSCS
T ss_pred             HHHHHHhcCcEeEEEEeCCCCCCCC-CchHhcCCCEEECCCCC
Confidence            9999999999999999999999985 89999999999999997

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=100.00  E-value=1.3e-50  Score=363.81  Aligned_cols=183  Identities=26%  Similarity=0.412  Sum_probs=165.4

Q ss_pred             hhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC---------CCcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcC
Q 017490          138 ASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV---------PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR  208 (370)
Q Consensus       138 ~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~---------~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr  208 (370)
                      ++||||++++||+++|++..+++.+++|.|..         ..+.+|.||||||||+|+||+.+|+++++|||+|++||+
T Consensus         1 e~VAE~ai~liL~l~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~   80 (193)
T d1mx3a1           1 EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDP   80 (193)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECT
T ss_pred             CcHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccccccccCceeeeCceEEEeccccccccceeeeeccccceeeccC
Confidence            47999999999999999999999999999964         357899999999999999999999999999999999999


Q ss_pred             CCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490          209 SWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~  288 (370)
                      +.......                 ........++++++++||+|++|+|++++|+++||++.|+.||+|++|||+|||+
T Consensus        81 ~~~~~~~~-----------------~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~  143 (193)
T d1mx3a1          81 YLSDGVER-----------------ALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGG  143 (193)
T ss_dssp             TSCTTHHH-----------------HHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTT
T ss_pred             cccccchh-----------------hhccccccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCce
Confidence            76542100                 0001124689999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHhCCceEEEEecCCCCCCC-CCCcccCCCceEEccCCCC
Q 017490          289 LLDYEAIAHYLECGHLGGLGIDVAWTEPFD-PNDPILKFKNVLITPHVGG  337 (370)
Q Consensus       289 ~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~-~~~pL~~~~nvilTPHia~  337 (370)
                      +||++||+++|++|++.||+||||++||++ .++|||++|||++|||+|+
T Consensus       144 ivde~aL~~aL~~~~i~~a~lDV~~~EP~~~~~~~l~~~~nvi~TPHiA~  193 (193)
T d1mx3a1         144 LVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAW  193 (193)
T ss_dssp             SBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTSSTTTTCSSEEECSSCTT
T ss_pred             EEcHHHHHHHHHcCCceEEEEEcCCCCCCCCCchhHHcCCCEEEcCCcCc
Confidence            999999999999999999999999999987 4789999999999999986

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=100.00  E-value=1.1e-50  Score=363.80  Aligned_cols=183  Identities=31%  Similarity=0.427  Sum_probs=165.5

Q ss_pred             hhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC-----CCcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          138 ASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV-----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       138 ~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~-----~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      .+||||++++||+++|++.++++.+++|.|..     ..+++++|+++||||+|+||+.+|+++++|||+|++||++...
T Consensus         3 ~AvAE~ai~liL~~~R~i~~~~~~~r~g~w~~~~~~~~~~~~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~   82 (191)
T d1gdha1           3 VATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRAS   82 (191)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCC
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCccccccceecccceEEeecccchHHHHHHHHhhccccccccccccc
Confidence            68999999999999999999999999999952     3578999999999999999999999999999999999987553


Q ss_pred             ccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccC
Q 017490          213 HSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLD  291 (370)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd  291 (370)
                      ...                 ...... ...++++++++||+|++|+|+|++|+++||++.|+.||+|++|||+|||++||
T Consensus        83 ~~~-----------------~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivd  145 (191)
T d1gdha1          83 SSD-----------------EASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVD  145 (191)
T ss_dssp             HHH-----------------HHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBC
T ss_pred             cch-----------------hhcccccccCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchh
Confidence            110                 001111 34689999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceEEccCCCCc
Q 017490          292 YEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGV  338 (370)
Q Consensus       292 ~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~  338 (370)
                      ++||+++|++|++.||+||||++|| ++++|||++|||++|||+|+.
T Consensus       146 e~aL~~aL~~g~i~~a~lDV~~~EP-~~~~~l~~~~nvi~TPHiasa  191 (191)
T d1gdha1         146 NELVVAALEAGRLAYAGFDVFAGEP-NINEGYYDLPNTFLFPHIGSA  191 (191)
T ss_dssp             HHHHHHHHHHTSEEEEEESCCTTTT-SCCTTGGGCTTEEECSSCTTC
T ss_pred             hHHHHHHHHcCCceEEEEECCCCCC-CCCchHHcCCCEEECCccccC
Confidence            9999999999999999999999999 578999999999999999974

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=100.00  E-value=4.7e-50  Score=359.03  Aligned_cols=183  Identities=28%  Similarity=0.365  Sum_probs=166.2

Q ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHhcccCC----CCcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcccc
Q 017490          139 SCAELTIYLMLGLLRKQNEMRMAIEQKKLGV----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHS  214 (370)
Q Consensus       139 ~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~----~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~  214 (370)
                      +||||+++++|+++|++..++..++++.|..    ..++++.|++|||+|+|+||+.+|+++++|||+|.+||+...+..
T Consensus         2 sVAE~~l~~iL~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~   81 (188)
T d2naca1           2 SVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPES   81 (188)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHH
T ss_pred             cHHHHHHHHHHHHHhCHHHHHHHHHhCCCCCcccCCcceeccccceeeccccccchhhhhhhhccCceEEEEeecccccc
Confidence            7999999999999999999999999999963    357899999999999999999999999999999999998754421


Q ss_pred             ccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHH
Q 017490          215 QVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEA  294 (370)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~a  294 (370)
                      ...                ........++++++++||+|++|+|+|++|+++||++.|+.||+|++|||+|||++||++|
T Consensus        82 ~~~----------------~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~a  145 (188)
T d2naca1          82 VEK----------------ELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDA  145 (188)
T ss_dssp             HHH----------------HHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHH
T ss_pred             ccc----------------cccccccCCHHHHHHhccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHHH
Confidence            100                0001134689999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceEEccCCCC
Q 017490          295 IAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGG  337 (370)
Q Consensus       295 L~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~  337 (370)
                      |+++|++|++.||+||||++||++.++|||++||+++|||+||
T Consensus       146 L~~aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~nv~~TPHiaG  188 (188)
T d2naca1         146 VARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISG  188 (188)
T ss_dssp             HHHHHHTTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCTT
T ss_pred             HHHHHhCCCceeEEEeCCCCCCCCCCChHHcCCCeEEccccCc
Confidence            9999999999999999999999999999999999999999997

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=100.00  E-value=2.2e-50  Score=364.27  Aligned_cols=181  Identities=28%  Similarity=0.358  Sum_probs=164.1

Q ss_pred             hhHHHHHHHHHHHHHHhHHHHHHHHHhcccC---CCCcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcccc
Q 017490          138 ASCAELTIYLMLGLLRKQNEMRMAIEQKKLG---VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHS  214 (370)
Q Consensus       138 ~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~---~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~  214 (370)
                      .+||||++++||+++|++..+++.+++|.|.   ...+++|.|+||||||+|+||+.+|+++++|||+|++||++.....
T Consensus         3 ~aVAE~~l~~iL~l~R~~~~~~~~~~~g~w~~~~~~~~~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~   82 (199)
T d1dxya1           3 AAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGD   82 (199)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCCCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSC
T ss_pred             hHHHHHHHHHHHHHHhCHHHHHHHHHhCCCCcccCcccccccceeeeeeecccccccccccccccceeeeccCCccchhh
Confidence            6899999999999999999999999999995   3468899999999999999999999999999999999998754310


Q ss_pred             ccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHH
Q 017490          215 QVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEA  294 (370)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~a  294 (370)
                                          .......++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++|
T Consensus        83 --------------------~~~~~~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde~a  142 (199)
T d1dxya1          83 --------------------HPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQA  142 (199)
T ss_dssp             --------------------CTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHH
T ss_pred             --------------------hcchhHHHHHHHHHhcccceeeecccccccccccHHHhhccCCceEEEecccHhhhhhHH
Confidence                                001124689999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCceEEEEecCCCCCCC-------------CCCcccCCCceEEccCCCCc
Q 017490          295 IAHYLECGHLGGLGIDVAWTEPFD-------------PNDPILKFKNVLITPHVGGV  338 (370)
Q Consensus       295 L~~aL~~g~i~ga~lDV~~~EPl~-------------~~~pL~~~~nvilTPHia~~  338 (370)
                      |+++|++|+|+||+||||++||++             ..+|||.+|||++|||+|||
T Consensus       143 L~~aL~~g~i~ga~lDV~~~EP~~~~~~~~~~~~~~p~~~~L~~~~nviiTPHiagy  199 (199)
T d1dxya1         143 MLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYY  199 (199)
T ss_dssp             HHHHHHTTSEEEEEESSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEECSSCTTC
T ss_pred             HHHHHhcCCcceEeccccCCCCcchhhccccccccChhhHHHhcCCCEEECCccccC
Confidence            999999999999999999999962             23578899999999999997

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.8e-49  Score=355.30  Aligned_cols=182  Identities=32%  Similarity=0.399  Sum_probs=159.0

Q ss_pred             CchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCC--CcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccc
Q 017490          136 NAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH  213 (370)
Q Consensus       136 na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~--~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~  213 (370)
                      |+++||||+++++|+++|+++.++..++++.|...  .+.++.|++|||+|+|.||+.+|+++++|||+|++||+.....
T Consensus         1 Na~aVAE~~l~~il~l~R~~~~~~~~~~~~~w~~~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~   80 (188)
T d1sc6a1           1 NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP   80 (188)
T ss_dssp             THHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC
T ss_pred             CCHHHHHHHHHHHHHHHhChHHHHHHHHhCCCcccccccccccceEEEEeecccchhhhhhhcccccceEeeccccccch
Confidence            68999999999999999999999999999999743  5678999999999999999999999999999999999875431


Q ss_pred             cccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHH
Q 017490          214 SQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYE  293 (370)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~  293 (370)
                      .                    .......++++++++||+|++|+|++++|+++||++.|++||+|++|||+|||++||++
T Consensus        81 ~--------------------~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde~  140 (188)
T d1sc6a1          81 L--------------------GNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIP  140 (188)
T ss_dssp             C--------------------TTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHH
T ss_pred             h--------------------hhhhhhhhHHHHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhhH
Confidence            0                    01113468999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCceEEEEecCCCCCC----CCCCcccCCCceEEccCCCC
Q 017490          294 AIAHYLECGHLGGLGIDVAWTEPF----DPNDPILKFKNVLITPHVGG  337 (370)
Q Consensus       294 aL~~aL~~g~i~ga~lDV~~~EPl----~~~~pL~~~~nvilTPHia~  337 (370)
                      ||+++|++|++.||+||||++||+    |..+|||++|||++|||+||
T Consensus       141 aL~~aL~~~~~~~a~lDV~~~EP~~~~~~~~~~l~~~~nv~~TPHiaG  188 (188)
T d1sc6a1         141 ALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGG  188 (188)
T ss_dssp             HHHHHHHTTSEEEEEEEC---------CTTTGGGTTCTTEEEECCCSC
T ss_pred             HHHHHHHcCCceEEEEecCCCCCCCcCCccchhHhcCCCEEEcCCcCc
Confidence            999999999999999999999998    34568999999999999997

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=100.00  E-value=8.8e-50  Score=359.36  Aligned_cols=181  Identities=22%  Similarity=0.306  Sum_probs=162.4

Q ss_pred             hhHHHHHHHHHHHHHHhHHHHHHHHHhccc--CCCCcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccc
Q 017490          138 ASCAELTIYLMLGLLRKQNEMRMAIEQKKL--GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQ  215 (370)
Q Consensus       138 ~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~--~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~  215 (370)
                      ++||||++++||+++|++..+++.++++.|  ....|++|.|+||||||+|+||+.+|+++++|||+|++||+..++.. 
T Consensus         2 ~aVAE~~l~~~l~l~r~~~~~~~~~~~~~~~w~~~~g~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~-   80 (197)
T d1j4aa1           2 NAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPEL-   80 (197)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTTCCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHH-
T ss_pred             CHHHHHHHHHHHHHHhCcHHHHHHHHhCCCCcCCCcCccccCCeEEEecccccchhHHHhHhhhcccccccCccccccc-
Confidence            579999999999999999999999998865  44568999999999999999999999999999999999998754310 


Q ss_pred             cccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHH
Q 017490          216 VSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAI  295 (370)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL  295 (370)
                                        ........++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++||
T Consensus        81 ------------------~~~~~~~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL  142 (197)
T d1j4aa1          81 ------------------EKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAV  142 (197)
T ss_dssp             ------------------HHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHH
T ss_pred             ------------------ccceeeeccccccccccccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhhHHH
Confidence                              01111346899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCceEEEEecCCCCC-------------CCCCCcccCCCceEEccCCCC
Q 017490          296 AHYLECGHLGGLGIDVAWTEP-------------FDPNDPILKFKNVLITPHVGG  337 (370)
Q Consensus       296 ~~aL~~g~i~ga~lDV~~~EP-------------l~~~~pL~~~~nvilTPHia~  337 (370)
                      +++|++|+++||+||||++||             ++.++|||.+|||++|||+|+
T Consensus       143 ~~aL~~~~i~~a~lDV~~~Ep~~~~~~~~~~~~p~~~~~~L~~~~nviiTPHiA~  197 (197)
T d1j4aa1         143 IRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAF  197 (197)
T ss_dssp             HHHHHHTSEEEEEESCCTTCTTTTTSBCTTSCCSCHHHHHHHHCTTEEECSSCTT
T ss_pred             HHHHhcccchheeeeccccCCcccccccccccCCccchhhhhcCCCEEeCcccCc
Confidence            999999999999999999995             334467999999999999986

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=100.00  E-value=5.7e-49  Score=349.76  Aligned_cols=179  Identities=26%  Similarity=0.405  Sum_probs=163.7

Q ss_pred             chhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCC-CcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccc
Q 017490          137 AASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP-TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQ  215 (370)
Q Consensus       137 a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~-~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~  215 (370)
                      |++||||++++||+++|++..+++.+++++|... ...++.||+|||||+|.||+.+|+++++|||+|++|||++.... 
T Consensus         1 A~aVAE~~~~liL~~~R~i~~~~~~~~~~~w~~~~~~~~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~~~-   79 (181)
T d1qp8a1           1 ADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVEIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEGP-   79 (181)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCSCCCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCSS-
T ss_pred             CchHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCCCCcccCceEEEeccccccccceeeeeccccccccccccccccc-
Confidence            4789999999999999999999999999999754 34579999999999999999999999999999999998754310 


Q ss_pred             cccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHH
Q 017490          216 VSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAI  295 (370)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL  295 (370)
                                        .   ....++++++++||+|++|+|+|++|+++||++.|+.||+|++|||+|||++||+++|
T Consensus        80 ------------------~---~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL  138 (181)
T d1qp8a1          80 ------------------W---RFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGV  138 (181)
T ss_dssp             ------------------S---CCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHH
T ss_pred             ------------------e---eeeechhhhhhccchhhcccccccccccccccceeeeccccceEEeccccccccchhh
Confidence                              0   0235899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCceEEEEecCCC-CCCCCCCcccCCCceEEccCCCC
Q 017490          296 AHYLECGHLGGLGIDVAWT-EPFDPNDPILKFKNVLITPHVGG  337 (370)
Q Consensus       296 ~~aL~~g~i~ga~lDV~~~-EPl~~~~pL~~~~nvilTPHia~  337 (370)
                      +++|++|++.+|++|||+. ||++.++|||.+|||++|||+||
T Consensus       139 ~~aL~~~~i~~aalDV~~~e~p~~~~~~l~~~~nvi~TPHiaG  181 (181)
T d1qp8a1         139 LRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAG  181 (181)
T ss_dssp             HHHHHHCTTCEEEESCCTTTTCCGGGHHHHTSTTEEECCSCSS
T ss_pred             hhhcccCcEEEEEEecCCCCCCCCCCChHHcCCCEEeccccCc
Confidence            9999999999999999975 46778899999999999999997

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.88  E-value=7.9e-24  Score=177.08  Aligned_cols=126  Identities=17%  Similarity=0.195  Sum_probs=102.6

Q ss_pred             CccEEEEeCCCCCCchhhHHHHHhcCCCceee-eCCCCChhhhcCcceEEEEe-CCCCCHHHHhcCCCCeEEEEeCcccC
Q 017490           35 NITRVLFCGPHFPASHNYTKEYLQNYPSIQVD-VVPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLE  112 (370)
Q Consensus        35 ~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d  112 (370)
                      .|+|||++++..+...    +.++....+.+. ..+++++.+.++++|+++++ ..++++++++++|+||+|++.|+|+|
T Consensus         1 sMpkvli~~~~~~~~~----~~L~~~~~v~~~~~~~~~el~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~g~G~d   76 (130)
T d1ygya2           1 SLPVVLIADKLAPSTV----AALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLD   76 (130)
T ss_dssp             CCCEEEECSSCCGGGG----TTSCSSSEEEECCTTSHHHHHHHGGGCSEEEECSSSCBCHHHHHTCTTCCEEEESSSCCT
T ss_pred             CCCEEEEECCCCHHHH----HHHhCCcEEEECCCCCHHHHHHHcCCCEEEEEcCcccchHHHHhhcccceEEeeeccccc
Confidence            4789999987654322    234332223222 23456778889999988775 56899999999999999999999999


Q ss_pred             ccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhccc
Q 017490          113 GVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKL  167 (370)
Q Consensus       113 ~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~  167 (370)
                      |||+++|+++||.|+|+||+   |+.+||||++++||+++|++..+++.+|+|.|
T Consensus        77 ~IDl~~~~~~gI~V~n~p~~---~~~~VAE~~~~l~L~l~R~i~~a~~~vr~g~~  128 (130)
T d1ygya2          77 NVDVDAATARGVLVVNAPTS---ASTAEAQDRAGTDVAESVRLALAGEFVPDAVN  128 (130)
T ss_dssp             TBCHHHHHHTTCEEECCTTS---SCBHHHHHHHHHHHHHHHHHHHTTCCCTTBCS
T ss_pred             chhHHHHHHCCceEEecCCC---CcHHHHHHHHHHHHHHHhhHHHHhhhcccCcc
Confidence            99999999999999999998   77999999999999999999988777777766

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.84  E-value=1.9e-21  Score=162.51  Aligned_cols=118  Identities=11%  Similarity=0.236  Sum_probs=96.2

Q ss_pred             cEEEEeCCCCCCchhhHHHHHhcCCCceeeeC---CCCChhhhcCcceEEEE-eCCCCCHHHHhcCC--CCeEEEEeCcc
Q 017490           37 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVV---PISDVPDVIANYHLCVV-KTMRLDSNCISRAN--QMKLIMQFGVG  110 (370)
Q Consensus        37 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~d~~i~-~~~~~~~~~l~~~~--~Lk~I~~~~~G  110 (370)
                      |||++++.. +.+.++++++.+.+ ++++...   ..+++.+.++++|++++ ...++++++|+++|  +||+|++.|+|
T Consensus         1 MKIl~~~~~-~~e~~~l~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~vl~~l~~~~Lk~I~~~~vG   78 (131)
T d1dxya2           1 MKIIAYGAR-VDEIQYFKQWAKDT-GNTLEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVG   78 (131)
T ss_dssp             CEEEECSCC-TTTHHHHHHHHHHH-CCEEEECSSCCCTTGGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSC
T ss_pred             CEEEEEecC-cCcHHHHHHHHHHc-CeEEEEcCCCCCHHHHHHhcCCCEEEEecCCCCCHHHHhhcccCCeEEEEEcccc
Confidence            799998764 44556666665543 4444322   34677788899997766 46799999999865  89999999999


Q ss_pred             cCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHH
Q 017490          111 LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMR  159 (370)
Q Consensus       111 ~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~  159 (370)
                      +||||+++|+++||.|+|+||+   |+.+||||++++||+++|++...+
T Consensus        79 ~d~ID~~~a~~~gI~V~n~P~~---~~~aVAE~~~~~~l~l~R~l~~~~  124 (131)
T d1dxya2          79 TDNIDMTAMKQYGIRLSNVPAY---TETAVHNMVYFSLQHLVDFLTKGE  124 (131)
T ss_dssp             CTTBCHHHHHHTTCEEECCTTS---SHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             cccccccccccceEEEEeCCCC---CchhHHHHHHHHHHHHHcchHHHH
Confidence            9999999999999999999999   779999999999999999987743

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.83  E-value=1.9e-22  Score=166.44  Aligned_cols=121  Identities=17%  Similarity=0.244  Sum_probs=96.4

Q ss_pred             cEEEEeCCCCCCchhhHHHHHhcCCCceeeeCCCCChhhhcCcceEEEEeCCCCCHHHHhcCCCCeEEEEeCcccCccch
Q 017490           37 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDI  116 (370)
Q Consensus        37 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~  116 (370)
                      |||++..+. |.  +. ++.++.+  +++..      ...+.++|+++.  ++++++.++++|+||||++.|+|+||+|+
T Consensus         1 Mki~v~~~l-p~--e~-~e~L~~~--~~v~~------~~d~~~~d~~l~--~~~~~~~l~~~~~Lk~i~~~~aG~D~i~~   66 (121)
T d1qp8a2           1 MELYVNFEL-PP--EA-EEELRKY--FKIVR------GGDLGNVEAALV--SRITAEELAKMPRLKFIQVVTAGLDHLPW   66 (121)
T ss_dssp             CEEECCSCC-CH--HH-HHHHHTT--CEEEC------SSCCTTBCCCCB--SCCCHHHHHHCTTCCCEEBSSSCCTTSCC
T ss_pred             CEEEEeCCC-CH--HH-HHHhhhc--ceEee------cccccccceeee--eccCHHHHhcCCCceEEEecccCcCCCCH
Confidence            688887654 32  22 3344432  23322      123557787654  58999999999999999999999999999


Q ss_pred             hhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEecCchhHHHHHHh
Q 017490          117 NAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL  196 (370)
Q Consensus       117 ~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l  196 (370)
                      +.++ +||.|+|+||+   |+.+||||++++||++.|+                         ++|+|+|.||+++|+++
T Consensus        67 ~~~~-~~i~v~n~~g~---~~~~vae~~~~~il~~~r~-------------------------l~i~G~G~iG~~iA~r~  117 (121)
T d1qp8a2          67 ESIP-PHVTVAGNAGS---NGYGNERVWRQMVMEAVRN-------------------------LITYATGGRPRNIAKRE  117 (121)
T ss_dssp             TTSC-TTSCEECCCSS---SSSSCHHHHHHHHHHHHHH-------------------------HHHHHTTSCCSCBCCGG
T ss_pred             HHhc-cCeEEEECCCC---ChHHHHHHHHHHHHHhcCC-------------------------EEEEcCCHHHHHHHHHH
Confidence            9885 69999999998   7899999999999999974                         58999999999999999


Q ss_pred             ccCC
Q 017490          197 RPFG  200 (370)
Q Consensus       197 ~~~G  200 (370)
                      ++||
T Consensus       118 ~a~G  121 (121)
T d1qp8a2         118 DYIG  121 (121)
T ss_dssp             GTC-
T ss_pred             HhcC
Confidence            9998

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=7.5e-21  Score=159.08  Aligned_cols=116  Identities=21%  Similarity=0.268  Sum_probs=90.0

Q ss_pred             CCccEEEEeCCCCCCchhhHHHHHhcCCCceee----eCCCCChhhhcCcceEEEEe-CCCCCHHHHhcCCCCeEEEEeC
Q 017490           34 KNITRVLFCGPHFPASHNYTKEYLQNYPSIQVD----VVPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFG  108 (370)
Q Consensus        34 ~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~  108 (370)
                      +.+||||++++.++..    .+.++......+.    .++++++.+.+.++|+++++ ..++++++|+++|+||+|+++|
T Consensus         2 k~kmKILv~d~i~~~a----~~~L~~~g~~~v~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~i~~~p~Lk~I~~~g   77 (132)
T d1sc6a2           2 KDKIKFLLVEGVHQKA----LESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFA   77 (132)
T ss_dssp             CSSCCEEECSCCCHHH----HHHHHHTTCCCEEECSSCCCHHHHHHHTTSCSEEEECSSCCBCHHHHHHCSSCCEEEECS
T ss_pred             CCCCEEEEECCCCHHH----HHHHHhCCCEEEEeCCCCCCHHHHHHhhcCCcEEEEecccccChhhhhccccceeEEEec
Confidence            4568999998765432    2344443332222    23456788899999988775 5689999999999999999999


Q ss_pred             cccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHH
Q 017490          109 VGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQN  156 (370)
Q Consensus       109 ~G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~  156 (370)
                      +|+||||+++|+++||.|+|+||+   |+.+||||++.+|++..|++.
T Consensus        78 vG~D~IDl~aa~~~gI~V~ntp~~---~~~svAe~~~lml~~~~~~~~  122 (132)
T d1sc6a2          78 IGTNQVDLDAAAKRGIPVFNAPFS---STQEAQENIGLEVAGKLIKYS  122 (132)
T ss_dssp             SCCTTBCHHHHHHTTCCEECCTTT---CSHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCHHHHHhCCCEEEECCCC---chhHHHHHHHHHHHHHhhHHH
Confidence            999999999999999999999998   779999987666654444443

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=99.80  E-value=6.7e-20  Score=153.69  Aligned_cols=114  Identities=13%  Similarity=0.196  Sum_probs=96.3

Q ss_pred             cEEEEeCCCCCCchhhHHHHHhcCCCceeeeCC---CCChhhhcCcceEEEE-eCCCCCHHHHhcCC--CCeEEEEeCcc
Q 017490           37 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVP---ISDVPDVIANYHLCVV-KTMRLDSNCISRAN--QMKLIMQFGVG  110 (370)
Q Consensus        37 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~i~-~~~~~~~~~l~~~~--~Lk~I~~~~~G  110 (370)
                      .||++++.. +.+.++.+++.+.++++++...+   .+++.+.++++|++++ +..++++++|+++|  +||+|+++|+|
T Consensus         1 ~KI~~f~~~-~~e~~~~e~~~~~~~~v~v~~~~~~~~~e~~~~~~~~d~viv~~~~~i~~eil~~l~~~~LK~I~~~~vG   79 (134)
T d1j4aa2           1 TKIFAYAIR-EDEKPFLKEWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVG   79 (134)
T ss_dssp             CEEEECSCC-GGGHHHHHHHHHTCTTSEEEECSSCCCTTTGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSC
T ss_pred             CeEEEEecc-cccHHHHHHHHHhCCCEEEEECCCCCCHHHHHHhcCCCEEEEecCCCcCHHHHhhhcccCeeEEEEccCC
Confidence            388998764 55677788888888888876543   3567788899998776 46899999999754  79999999999


Q ss_pred             cCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHH
Q 017490          111 LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNE  157 (370)
Q Consensus       111 ~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~  157 (370)
                      +||||+++|+++||.|+|+|+|      +||||++++||+++|++..
T Consensus        80 ~d~ID~~aa~~~gI~V~N~P~~------svae~a~~~ml~l~r~~~~  120 (134)
T d1j4aa2          80 VDNIDMAKAKELGFQITNVPVY------SYTTHAVRNMVVKAFDNNL  120 (134)
T ss_dssp             CTTBCHHHHHHTTCEEECCCCS------CCBHHHHHHHHHHHHHHHH
T ss_pred             cCccCHHHHHhCCeEEEECCCC------cHHHHHHHHHHHHHHHHhH
Confidence            9999999999999999999987      4799999999999998654

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=99.76  E-value=1.7e-19  Score=150.14  Aligned_cols=113  Identities=13%  Similarity=0.187  Sum_probs=86.2

Q ss_pred             ccEEEEeCCCCCCchhhHHHHHhcCCCceeee----CCCCChhhhcCcceEEEEe-CCCCCHHHHhcCC-CCeEEEEeCc
Q 017490           36 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV----VPISDVPDVIANYHLCVVK-TMRLDSNCISRAN-QMKLIMQFGV  109 (370)
Q Consensus        36 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~-~Lk~I~~~~~  109 (370)
                      ++|||++.+..+   ... +.++...++.+..    .+.+++.+.++++|+++++ ..++++++++++| +||+|++.|+
T Consensus         1 K~kVlit~~~~~---~~~-~~l~~~~~v~~~~~~~~~s~~el~~~~~~~d~ii~~~~~~i~~~~l~~~~~~LK~I~~~gv   76 (129)
T d1gdha2           1 KKKILITWPLPE---AAM-ARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSI   76 (129)
T ss_dssp             CCEEEESSCCCH---HHH-HHHHTTSEEEECCSTTCCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHSCTTCCEEEEESS
T ss_pred             CCEEEEeCCCCH---HHH-HHHHcCCcEEEeCCCCCCCHHHHHHHhcCCCEEEEcCCchhhhHHHhhhhhcceeeeeccc
Confidence            469999977532   222 3343322222221    2345677788999987764 6799999999997 7999999999


Q ss_pred             ccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhH
Q 017490          110 GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQ  155 (370)
Q Consensus       110 G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~  155 (370)
                      |+||||+++|+++||+|+|+||+   |+.+|||+++++|+.+++.+
T Consensus        77 G~d~ID~~~a~~~gI~V~ntpg~---~~~aVAE~A~~~~~l~~~l~  119 (129)
T d1gdha2          77 GFDHIDLDACKARGIKVGNAPHG---ATQAREDMAHQANDLIDALF  119 (129)
T ss_dssp             CCTTBCHHHHHHTTCEEECCCCS---BHHHHHHHHHHHHHHHHHHH
T ss_pred             CCccccHHHHHhCCCEEEECCCC---CchHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999998   88999998887776666543

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=99.76  E-value=1.1e-19  Score=158.17  Aligned_cols=146  Identities=18%  Similarity=0.232  Sum_probs=103.0

Q ss_pred             EecCCCCcccc----cccccCCCCCCc----cEEEEeCCCCCCchhhHHHHHhcCCCceeeeC-----CCCChhhhcCcc
Q 017490           14 IIQFHQGDISK----MEGMARSSDKNI----TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVV-----PISDVPDVIANY   80 (370)
Q Consensus        14 ~~~~~~~~~~~----~~~~~~~~~~~~----~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~   80 (370)
                      .-+|++..+-+    ..+|+++++..+    ..++=+    -......+++++.. +.++...     +.+++.+.+.|+
T Consensus        16 p~~y~~~~~p~i~~~pdg~t~p~p~~~~~~~~~l~g~----v~~~lglr~~Le~~-GhelV~~sd~~~~~~el~k~l~DA   90 (186)
T d2naca2          16 PKTYARDDLPKIDHYPGGQTLPTPKAIDFTPGQLLGS----VSGELGLRKYLESN-GHTLVVTSDKDGPDSVFERELVDA   90 (186)
T ss_dssp             CSCCSCSCCCCCCBCTTSCBCCCCSCCSSCTTSCCSB----TTTGGGCHHHHHHT-TCEEEEESCCSSTTSHHHHHHTTC
T ss_pred             CCccccccCCcceecCCCCcCCCccccccccchhccc----ccchhhHHHHHHHC-CCEEEEecCCCCChHHHHhhcccC
Confidence            34555544443    445777765432    111111    11223457777654 5554322     234567789999


Q ss_pred             eEEEEe---CCCCCHHHHhcCCCCeEEEEeCcccCccchhhHhcCCeEEeccCCCCCCCchhHHHHH--------HHHHH
Q 017490           81 HLCVVK---TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELT--------IYLML  149 (370)
Q Consensus        81 d~~i~~---~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~--------l~~~L  149 (370)
                      |++|+.   ..++++++|+++|+||+|++.|+|+||||+++|+++||.|+|+||+   |+.+||||+        +.+++
T Consensus        91 DivI~~pf~~~~lt~e~i~~ap~LKlI~~~g~G~D~VDl~aa~e~gI~V~n~pg~---n~~SVAEha~~~~~~~~i~~il  167 (186)
T d2naca2          91 DVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYC---NSTTLTAQARYAAGTREILECF  167 (186)
T ss_dssp             SEEEEBTTBCCCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHTTCEEEECTTT---THCSHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEecccccccCHHHHhcCccceEEEEeccCCccccHHHHHhCCCEEEECCCc---CcHHHHHHHHHHHHHHHHHHHH
Confidence            999885   4689999999999999999999999999999999999999999998   889999999        55666


Q ss_pred             HHHHhHHHHHHHHHhccc
Q 017490          150 GLLRKQNEMRMAIEQKKL  167 (370)
Q Consensus       150 ~~~R~~~~~~~~~~~~~~  167 (370)
                      ...|++...+..+++|+|
T Consensus       168 ~~~r~~~~~~~~v~~G~~  185 (186)
T d2naca2         168 FEGRPIRDEYLIVQGGAL  185 (186)
T ss_dssp             HHTCCCCGGGEEEETTEE
T ss_pred             Hhccchhhhhhhhhcccc
Confidence            666666555444555555

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=99.75  E-value=1.6e-18  Score=144.72  Aligned_cols=118  Identities=14%  Similarity=0.266  Sum_probs=89.8

Q ss_pred             ccEEEEeCCCCCCchhhHHHHHhcCCCceeee-CCCCChhh-hcCcceEEEE-eCCCCCHHHHhcCCCCeEEEEeCcccC
Q 017490           36 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV-VPISDVPD-VIANYHLCVV-KTMRLDSNCISRANQMKLIMQFGVGLE  112 (370)
Q Consensus        36 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~d~~i~-~~~~~~~~~l~~~~~Lk~I~~~~~G~d  112 (370)
                      ||+|++.+.. +.  ......++....+.+.+ .+.+++.+ .+.+++.+++ ...++++++|+++|+||+|++.|+|+|
T Consensus         1 mP~v~~ld~~-d~--~~e~~~L~~~~~v~~~~~~s~~e~~e~~~~~a~~vlv~~~~~i~~~~l~~~~~Lk~I~~~g~G~d   77 (133)
T d1mx3a2           1 MPLVALLDGR-DC--TVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFD   77 (133)
T ss_dssp             CCEEEESSCS-CC--TTTHHHHTTTCEEEECCCSSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTCSSCCEEEESSSCCT
T ss_pred             CCEEEEecCC-cc--hhhHHHhcccceEEEecCCChHHHHHHHhccCcEEEEEeCCCcCHHHHhhCCCCeEEEEcCCCcc
Confidence            5777887653 21  22245566655554432 23344444 4456776555 478999999999999999999999999


Q ss_pred             ccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHH
Q 017490          113 GVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRM  160 (370)
Q Consensus       113 ~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~  160 (370)
                      |||+++|+++||.|+|+||+   |+ ++|||++++||+++|++++..+
T Consensus        78 ~iD~~~~~~~gI~v~n~p~~---~~-~vAE~a~~lil~~~R~i~~a~~  121 (133)
T d1mx3a2          78 NIDIKSAGDLGIAVCNVPAA---SV-YSEQASIEMREEAAREIRRAIT  121 (133)
T ss_dssp             TBCHHHHHHTTCEEECCCST---TH-CCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEeeeeheeCCEEEEcCCCC---Cc-hhHHHHHHHHHHHHhhHHHHHh
Confidence            99999999999999999997   44 5799999999999999987543

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=7.5e-16  Score=131.97  Aligned_cols=119  Identities=19%  Similarity=0.200  Sum_probs=92.2

Q ss_pred             cccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCC
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  251 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  251 (370)
                      +..|.||+++|+|||.||+.+|+++++|||+|+++|+.|.+...                 ..-......+++++++.+|
T Consensus        19 ~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~-----------------A~~dG~~v~~~~~a~~~ad   81 (163)
T d1li4a1          19 DVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQ-----------------AAMEGYEVTTMDEACQEGN   81 (163)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHH-----------------HHHTTCEECCHHHHTTTCS
T ss_pred             CceecCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHH-----------------hhcCceEeeehhhhhhhcc
Confidence            46799999999999999999999999999999999998654210                 0001113468999999999


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcC-CCcccCHHHHHHHHHhCCceEEEEec
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA-RGGLLDYEAIAHYLECGHLGGLGIDV  311 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~s-Rg~~vd~~aL~~aL~~g~i~ga~lDV  311 (370)
                      +++++.    .++++|+.+.|++||+|++|.|++ +..-+|.++|.+...+.+.....+|.
T Consensus        82 ivvtaT----Gn~~vI~~eh~~~MKdgaIL~N~Ghfd~EId~~~L~~~~~~~~~v~~~v~~  138 (163)
T d1li4a1          82 IFVTTT----GCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDR  138 (163)
T ss_dssp             EEEECS----SCSCSBCHHHHTTCCTTEEEEECSSSTTSBCHHHHHHHCSEEEEEETTEEE
T ss_pred             EEEecC----CCccchhHHHHHhccCCeEEEEeccccceecHHHHhhccceeeeecCCeeE
Confidence            998873    367899999999999999999987 67779999988755443333233443

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.47  E-value=3.1e-14  Score=121.87  Aligned_cols=115  Identities=17%  Similarity=0.297  Sum_probs=95.4

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEEEe
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCC  256 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~  256 (370)
                      .+|||||+|.||+.+|++|...|++|++|||++++..                 .+..... ...+.++++++||+|++|
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~-----------------~~~~~~~~~~~~~~e~~~~~d~ii~~   63 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIA-----------------DVIAAGAETASTAKAIAEQCDVIITM   63 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHH-----------------HHHHTTCEECSSHHHHHHHCSEEEEC
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhH-----------------HHHHhhhhhcccHHHHHhCCCeEEEE
Confidence            3799999999999999999999999999999865421                 1111111 346899999999999999


Q ss_pred             ccCChhhhcccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEec
Q 017490          257 LSLNKQTAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV  311 (370)
Q Consensus       257 lP~t~~t~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV  311 (370)
                      +|..++++.++.  ...+..+++|.++||++....-....+.+.+.+..+.  .+|.
T Consensus        64 v~~~~~v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~--~vda  118 (161)
T d1vpda2          64 LPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVE--MLDA  118 (161)
T ss_dssp             CSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCE--EEEC
T ss_pred             cCCHHHHHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--eecc
Confidence            999988888762  3578889999999999999999999999999998887  5665

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.37  E-value=3.7e-13  Score=115.14  Aligned_cols=115  Identities=18%  Similarity=0.245  Sum_probs=94.6

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEEEe
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCC  256 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~  256 (370)
                      ++|||||+|.||.++|++|...|++|.+|||+.++..                 .+..... ...++.+.+..+|+|++|
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~-----------------~~~~~~~~~~~~~~e~~~~~diii~~   64 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVD-----------------GLVAAGASAARSARDAVQGADVVISM   64 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHH-----------------HHHHTTCEECSSHHHHHTSCSEEEEC
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhh-----------------hhhhhhccccchhhhhccccCeeeec
Confidence            4799999999999999999999999999999865421                 1111111 346789999999999999


Q ss_pred             ccCChhhhcccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEec
Q 017490          257 LSLNKQTAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV  311 (370)
Q Consensus       257 lP~t~~t~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV  311 (370)
                      +|..+..+.++.  ...+..+++|.++||++...+-+...+.+.+++..+.  .+|.
T Consensus        65 v~~~~~~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~--~~da  119 (162)
T d3cuma2          65 LPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLA--MLDA  119 (162)
T ss_dssp             CSCHHHHHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEC
T ss_pred             ccchhhHHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCc--EEec
Confidence            999888777652  4478889999999999999999999999999998886  6676

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.37  E-value=4.1e-13  Score=114.76  Aligned_cols=150  Identities=17%  Similarity=0.231  Sum_probs=95.4

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEec
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  257 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  257 (370)
                      ++|||||+|.||..+|+.|+..|++|.+|||+.+.......        .    ...+   ...+..+.+++||+|++++
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~--------~----~~~~---~~~~~~~~~~~~DiIilav   65 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE--------R----QLVD---EAGQDLSLLQTAKIIFLCT   65 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH--------T----TSCS---EEESCGGGGTTCSEEEECS
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHH--------h----hccc---eeeeecccccccccccccC
Confidence            47999999999999999999999999999997543110000        0    0011   1123346789999999999


Q ss_pred             cCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCC-CCCCCCCcccCCCceEEccCCC
Q 017490          258 SLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWT-EPFDPNDPILKFKNVLITPHVG  336 (370)
Q Consensus       258 P~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~-EPl~~~~pL~~~~nvilTPHia  336 (370)
                      |. ..++.+++ +....+++++++++++......... ...+...-+..--+...+. .|......|+....+++||+-+
T Consensus        66 p~-~~~~~vl~-~l~~~l~~~~iv~~~~s~~~~~~~~-~~~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~  142 (165)
T d2f1ka2          66 PI-QLILPTLE-KLIPHLSPTAIVTDVASVKTAIAEP-ASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEY  142 (165)
T ss_dssp             CH-HHHHHHHH-HHGGGSCTTCEEEECCSCCHHHHHH-HHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTT
T ss_pred             cH-hhhhhhhh-hhhhhcccccceeeccccchHHHHH-HHHhhcccccceeeecccccchhhhcccccCCCeEEEEeCCC
Confidence            94 46777774 5678899999999998765433333 3334333333222222111 1323344577777899999866


Q ss_pred             CccHHHHHHH
Q 017490          337 GVTEHSYRSM  346 (370)
Q Consensus       337 ~~t~~~~~~~  346 (370)
                      + +++..+.+
T Consensus       143 ~-~~~~~~~v  151 (165)
T d2f1ka2         143 T-DPEQLACL  151 (165)
T ss_dssp             C-CHHHHHHH
T ss_pred             C-CHHHHHHH
Confidence            4 34444433

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=99.28  E-value=2.6e-12  Score=109.18  Aligned_cols=103  Identities=21%  Similarity=0.293  Sum_probs=82.8

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCE
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  252 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  252 (370)
                      .-+.||++.|+|||.+|+.+|++++++|++|++++.+|-....                 ..-+.....+++++++.+|+
T Consensus        19 ~~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alq-----------------A~mdGf~v~~~~~a~~~aDi   81 (163)
T d1v8ba1          19 FLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQ-----------------AVMEGFNVVTLDEIVDKGDF   81 (163)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHH-----------------HHTTTCEECCHHHHTTTCSE
T ss_pred             ceecCCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHH-----------------HHhcCCccCchhHccccCcE
Confidence            5689999999999999999999999999999999987644211                 11111134689999999999


Q ss_pred             EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcc-cCHHHHH
Q 017490          253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL-LDYEAIA  296 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~-vd~~aL~  296 (370)
                      ++.+..    ..++|+.+.|..||+|++|-|++.... +|.++|.
T Consensus        82 ~vTaTG----n~~vI~~~h~~~MKdgaIl~N~GHfd~EIdv~~L~  122 (163)
T d1v8ba1          82 FITCTG----NVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELF  122 (163)
T ss_dssp             EEECCS----SSSSBCHHHHTTCCTTCEEEECSSTTTSBCHHHHH
T ss_pred             EEEcCC----CCccccHHHHHHhhCCeEEEeccccchhhhhHHHH
Confidence            999866    345899999999999999999998764 5655554

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.23  E-value=1.9e-11  Score=104.52  Aligned_cols=150  Identities=21%  Similarity=0.199  Sum_probs=100.9

Q ss_pred             ceEEEEecCchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHH-HHhcCCEEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFE-FASKADVVV  254 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-ll~~aDiV~  254 (370)
                      |+|+|||+|.||.++|+.|+..|+  +|++||++.......        ...+    ..+.  ...+.++ ....+|+|+
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a--------~~~~----~~~~--~~~~~~~~~~~~~dlIi   67 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKA--------VDLG----IIDE--GTTSIAKVEDFSPDFVM   67 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHH--------HHTT----SCSE--EESCGGGGGGTCCSEEE
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHH--------HHhh----cchh--hhhhhhhhhcccccccc
Confidence            479999999999999999998775  899999975431100        0000    0000  1123333 335799999


Q ss_pred             EeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCC-CCCCCCCcccCCCceEEcc
Q 017490          255 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWT-EPFDPNDPILKFKNVLITP  333 (370)
Q Consensus       255 l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~-EPl~~~~pL~~~~nvilTP  333 (370)
                      +|+|. .++..+++ +....+++++++++++.....-.+++.+.+...-+.+--+...+. .|..+...|+.-.++++||
T Consensus        68 la~p~-~~~~~vl~-~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p  145 (171)
T d2g5ca2          68 LSSPV-RTFREIAK-KLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTP  145 (171)
T ss_dssp             ECSCH-HHHHHHHH-HHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEEEECCCSCCSGGGCCSSTTTTCEEEECC
T ss_pred             ccCCc-hhhhhhhh-hhhccccccccccccccccHHHHHHHHHhhcccccccccccccccccHHHHHHHhhCCCeEEEec
Confidence            99994 44555553 466779999999999997766677777777766555555554433 2444556788889999999


Q ss_pred             CCCCccHHHHH
Q 017490          334 HVGGVTEHSYR  344 (370)
Q Consensus       334 Hia~~t~~~~~  344 (370)
                      |-.. +.+..+
T Consensus       146 ~~~~-~~~~~~  155 (171)
T d2g5ca2         146 TKKT-DKKRLK  155 (171)
T ss_dssp             CSSS-CHHHHH
T ss_pred             CCCC-CHHHHH
Confidence            8653 444443

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=99.22  E-value=4.3e-12  Score=109.79  Aligned_cols=119  Identities=10%  Similarity=0.167  Sum_probs=93.1

Q ss_pred             CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccc---cC--CCCCHHHHHhcCC
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE---KG--CHEDIFEFASKAD  251 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~l~ell~~aD  251 (370)
                      .++|||||+|.||.++|++|...|++|++|||++++...-.             ......   .+  ...++.+.+..+|
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-------------~~~~~~~~~~~a~~~~~~~~~~~~~~   68 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL-------------ANEAKGTKVLGAHSLEEMVSKLKKPR   68 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHH-------------HTTTTTSSCEECSSHHHHHHHBCSSC
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-------------Hhccccccccchhhhhhhhhhhcccc
Confidence            46899999999999999999999999999999876521100             000000   01  2234556677899


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEec
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV  311 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV  311 (370)
                      ++++++|..+.+..++ .+.+..+++|.++||++...+-+...+.+.+.+..+.  .+|.
T Consensus        69 ~ii~~~~~~~~v~~v~-~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~--~lda  125 (176)
T d2pgda2          69 RIILLVKAGQAVDNFI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGIL--FVGS  125 (176)
T ss_dssp             EEEECSCTTHHHHHHH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEE
T ss_pred             eEEEecCchHHHHHHH-HHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCc--eecc
Confidence            9999999988887765 4688899999999999999999999999999998887  5675

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.10  E-value=3e-11  Score=102.26  Aligned_cols=112  Identities=18%  Similarity=0.277  Sum_probs=86.1

Q ss_pred             eEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEecc
Q 017490          179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLS  258 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP  258 (370)
                      +|||||+|.||..+|++|...|..| +|+++..+..                 ......+...+..+.+.++|++++++|
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~i~~~~   63 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKAL-----------------RHQEEFGSEAVPLERVAEARVIFTCLP   63 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHH-----------------HHHHHHCCEECCGGGGGGCSEEEECCS
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHH-----------------HHHHHcCCcccccccccceeEEEeccc
Confidence            6999999999999999999888866 5666544311                 111122222334466778999999999


Q ss_pred             CChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEec
Q 017490          259 LNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV  311 (370)
Q Consensus       259 ~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV  311 (370)
                      ..++..... ...+..+++|.++||+++...-....+.+.+++..+.  .+|.
T Consensus        64 ~~~~v~~~~-~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~--~lda  113 (156)
T d2cvza2          64 TTREVYEVA-EALYPYLREGTYWVDATSGEPEASRRLAERLREKGVT--YLDA  113 (156)
T ss_dssp             SHHHHHHHH-HHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEE--EEEC
T ss_pred             chhhhhhhh-ccccccccccccccccccCCHHHHHHHHHHHHHcCCe--EEec
Confidence            887776654 4688899999999999999999999999999998887  5666

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=98.94  E-value=9.1e-10  Score=92.24  Aligned_cols=93  Identities=19%  Similarity=0.208  Sum_probs=71.2

Q ss_pred             ccCceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEE
Q 017490          175 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  253 (370)
Q Consensus       175 l~g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  253 (370)
                      ..=++|+||| +|.||+.+|+.|+..|++|.+||+....                             ..++.+..+|++
T Consensus         7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~-----------------------------~~~~~~~~~~~v   57 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA-----------------------------VAESILANADVV   57 (152)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG-----------------------------GHHHHHTTCSEE
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccccc-----------------------------ccchhhhhcccc
Confidence            3456999999 9999999999999999999999986432                             244667899999


Q ss_pred             EEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHH
Q 017490          254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHY  298 (370)
Q Consensus       254 ~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~a  298 (370)
                      ++++|.. .+..+ -.+.+..++++++++|++.-..--.+++.+.
T Consensus        58 ~~~~~~~-~~~~v-~~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~  100 (152)
T d2pv7a2          58 IVSVPIN-LTLET-IERLKPYLTENMLLADLTSVKREPLAKMLEV  100 (152)
T ss_dssp             EECSCGG-GHHHH-HHHHGGGCCTTSEEEECCSCCHHHHHHHHHH
T ss_pred             ccccchh-hheee-eecccccccCCceEEEecccCHHHHHHHHHH
Confidence            9999954 33333 3567888999999999987554333444433

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.85  E-value=1.3e-09  Score=93.77  Aligned_cols=121  Identities=18%  Similarity=0.240  Sum_probs=87.1

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHH---HHHhcCCEEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIF---EFASKADVVV  254 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---ell~~aDiV~  254 (370)
                      ++|||||+|.||..+|++|...|++|.+|||++++.......  ....      ..........+.+   ..+..++.+.
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~--~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKA--NASA------PFAGNLKAFETMEAFAASLKKPRKAL   73 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH--TTTS------TTGGGEEECSCHHHHHHHBCSSCEEE
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHc--CCcc------ccccchhhhhhhhHHHHhcccceEEE
Confidence            479999999999999999999999999999986552110000  0000      0000000112333   3456889999


Q ss_pred             EeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEE
Q 017490          255 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGL  307 (370)
Q Consensus       255 l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga  307 (370)
                      .+++........++ .....+++|.++||++....-+...+.+.|.+..+...
T Consensus        74 ~~~~~~~~~~~~~~-~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~l  125 (178)
T d1pgja2          74 ILVQAGAATDSTIE-QLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFL  125 (178)
T ss_dssp             ECCCCSHHHHHHHH-HHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEE
T ss_pred             EeecCcchhhhhhh-hhhhhccccceecccCccchhHHHHHHHHHhhcceeEe
Confidence            99998777776664 56777999999999999999999999999998888743

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.84  E-value=2.5e-09  Score=89.91  Aligned_cols=100  Identities=13%  Similarity=0.276  Sum_probs=76.5

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCCEEEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVC  255 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~l  255 (370)
                      ++|||||+|+||+++++.|...|.+|.+++|+.++.                 .++..+++  ...+.++++++||+|++
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~-----------------~~l~~~~g~~~~~~~~~~~~~~dvIil   63 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERS-----------------KEIAEQLALPYAMSHQDLIDQVDLVIL   63 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHH-----------------HHHHHHHTCCBCSSHHHHHHTCSEEEE
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhH-----------------Hhhccccceeeechhhhhhhccceeee
Confidence            479999999999999999999999999999875441                 11222222  34688999999999999


Q ss_pred             eccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 017490          256 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG  302 (370)
Q Consensus       256 ~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g  302 (370)
                      +++.. ..     .+.++.++++.++|++.-|  +..+.|.+.|..+
T Consensus        64 avkp~-~~-----~~vl~~l~~~~~iis~~ag--i~~~~l~~~l~~~  102 (152)
T d2ahra2          64 GIKPQ-LF-----ETVLKPLHFKQPIISMAAG--ISLQRLATFVGQD  102 (152)
T ss_dssp             CSCGG-GH-----HHHHTTSCCCSCEEECCTT--CCHHHHHHHHCTT
T ss_pred             ecchH-hH-----HHHhhhcccceeEeccccc--ccHHHHHhhhccc
Confidence            99732 22     4667889999999999877  5677777777543

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.84  E-value=7e-10  Score=93.15  Aligned_cols=110  Identities=19%  Similarity=0.223  Sum_probs=78.4

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEec
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  257 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  257 (370)
                      .+|||||+|.||+.+|+.|...|++|+++|+...+...                ......+...+.++++++||+|++|+
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~----------------~~~~~~~~~~~~~e~~~~~diIi~~v   64 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTI----------------ERARTVGVTETSEEDVYSCPVVISAV   64 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHH----------------HHHHHHTCEECCHHHHHTSSEEEECS
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHH----------------HhhhcccccccHHHHHhhcCeEEEEe
Confidence            47999999999999999999999999999987544211                01111122356889999999999999


Q ss_pred             cCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEec
Q 017490          258 SLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV  311 (370)
Q Consensus       258 P~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV  311 (370)
                      |...... .+ .....  ..+.++|+++.......+.+.+.+++..    .+|+
T Consensus        65 ~~~~~~~-~~-~~~~~--~~~~~~id~st~~p~~~~~l~~~~~~~~----~~d~  110 (152)
T d1i36a2          65 TPGVALG-AA-RRAGR--HVRGIYVDINNISPETVRMASSLIEKGG----FVDA  110 (152)
T ss_dssp             CGGGHHH-HH-HHHHT--TCCSEEEECSCCCHHHHHHHHHHCSSSE----EEEE
T ss_pred             cCchHHH-HH-Hhhcc--cCCceeeccCcCCHHHHHHHHHHHhccC----CCcc
Confidence            9654332 22 11222  2368999999988877888888876543    3566

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.73  E-value=4.9e-09  Score=89.32  Aligned_cols=103  Identities=21%  Similarity=0.254  Sum_probs=75.9

Q ss_pred             cccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCE
Q 017490          174 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADV  252 (370)
Q Consensus       174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDi  252 (370)
                      .....+|.|||.|..|..-++.++++|.+|.++|.+.......     +..+.     ....... ..+.+++.+++||+
T Consensus        29 gv~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l-----~~~~~-----~~~~~~~~~~~~l~~~~~~aDi   98 (168)
T d1pjca1          29 GVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYL-----ETLFG-----SRVELLYSNSAEIETAVAEADL   98 (168)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-----HHHHG-----GGSEEEECCHHHHHHHHHTCSE
T ss_pred             CCCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHH-----HHhhc-----ccceeehhhhhhHHHhhccCcE
Confidence            3567799999999999999999999999999999876542110     00000     0011111 23467889999999


Q ss_pred             EEEeccC-ChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          253 VVCCLSL-NKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       253 V~l~lP~-t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                      |+.++-. ......+|.++.++.||||+++||++-
T Consensus        99 vI~aalipG~~aP~lIt~~mv~~Mk~GSVIVDvai  133 (168)
T d1pjca1          99 LIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAV  133 (168)
T ss_dssp             EEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred             EEEeeecCCcccCeeecHHHHhhcCCCcEEEEeec
Confidence            9987542 445677999999999999999999974

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.66  E-value=2.2e-08  Score=85.35  Aligned_cols=123  Identities=20%  Similarity=0.161  Sum_probs=78.8

Q ss_pred             CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEEE
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVC  255 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l  255 (370)
                      .||++|||.|.+|..+|..|...|++|.+|||++.........  ........-........ ...++.+.++++|+|++
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii   78 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDR--GAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILI   78 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH--TSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEE
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc--CCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEE
Confidence            3799999999999999999999999999999975431100000  00000000000000001 12578999999999999


Q ss_pred             eccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 017490          256 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHL  304 (370)
Q Consensus       256 ~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i  304 (370)
                      ++|. ..++.++ ++.-..++++.+++- .-|....+..+.+.+.....
T Consensus        79 ~v~~-~~~~~~~-~~i~~~l~~~~~iv~-~~g~~~~~~~~~~~~~~~~~  124 (184)
T d1bg6a2          79 VVPA-IHHASIA-ANIASYISEGQLIIL-NPGATGGALEFRKILRENGA  124 (184)
T ss_dssp             CSCG-GGHHHHH-HHHGGGCCTTCEEEE-SSCCSSHHHHHHHHHHHTTC
T ss_pred             EEch-hHHHHHH-HHhhhccCCCCEEEE-eCCCCccHHHHHHHHHHhcC
Confidence            9984 4455554 345667899998874 45555556667777776654

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=98.61  E-value=3.6e-09  Score=88.43  Aligned_cols=88  Identities=13%  Similarity=0.021  Sum_probs=58.4

Q ss_pred             EEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEEEecc
Q 017490          180 VFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLS  258 (370)
Q Consensus       180 vGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~lP  258 (370)
                      |||||+|+||+.+|+.|+..+.-+.+|+|++.+.                 ..+....+ ...++++++++||+|++|+|
T Consensus         2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~-----------------~~l~~~~~~~~~~~~~~~~~~DiVil~v~   64 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRA-----------------RNLAEVYGGKAATLEKHPELNGVVFVIVP   64 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC----CCCEECSSHHHH-----------------HHHHHHTCCCCCSSCCCCC---CEEECSC
T ss_pred             EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhh-----------------cchhhcccccccchhhhhccCcEEEEecc
Confidence            7999999999999999987444346899886542                 12222323 34577788999999999999


Q ss_pred             CChhhhcccCHHHHhcC-CCCcEEEEcCCCccc
Q 017490          259 LNKQTAGIVNKSFLSSM-KKGSLLVNIARGGLL  290 (370)
Q Consensus       259 ~t~~t~~li~~~~l~~m-k~gailIN~sRg~~v  290 (370)
                      .. +..     +.++.+ +++.++|+++.+...
T Consensus        65 d~-~i~-----~v~~~l~~~~~ivi~~s~~~~~   91 (153)
T d2i76a2          65 DR-YIK-----TVANHLNLGDAVLVHCSGFLSS   91 (153)
T ss_dssp             TT-THH-----HHHTTTCCSSCCEEECCSSSCG
T ss_pred             ch-hhh-----HHHhhhcccceeeeecccchhh
Confidence            53 332     345555 479999999877654

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.59  E-value=6.2e-08  Score=81.98  Aligned_cols=99  Identities=23%  Similarity=0.414  Sum_probs=69.4

Q ss_pred             cccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCE
Q 017490          174 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  252 (370)
Q Consensus       174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  252 (370)
                      .++++++.|||.|.||+.+++.|...|+ +|.+++|+..+...-.             .........+.++.+.+.++|+
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~-------------~~~~~~~~~~~~~~~~l~~~Di   87 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELA-------------RDLGGEAVRFDELVDHLARSDV   87 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHH-------------HHHTCEECCGGGHHHHHHTCSE
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHH-------------HhhhcccccchhHHHHhccCCE
Confidence            5899999999999999999999999998 6999999854421000             0111111245678888999999


Q ss_pred             EEEeccCChhhhcccCHHHHhcC------CCCcEEEEcCCCc
Q 017490          253 VVCCLSLNKQTAGIVNKSFLSSM------KKGSLLVNIARGG  288 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~~l~~m------k~gailIN~sRg~  288 (370)
                      |+.|++   ....+|+++.++..      ++..++||.|...
T Consensus        88 vi~ats---s~~~ii~~~~i~~~~~~r~~~~~~~iiDlavPr  126 (159)
T d1gpja2          88 VVSATA---APHPVIHVDDVREALRKRDRRSPILIIDIANPR  126 (159)
T ss_dssp             EEECCS---SSSCCBCHHHHHHHHHHCSSCCCEEEEECCSSC
T ss_pred             EEEecC---CCCccccHhhhHHHHHhcccCCCeEEEeecCCC
Confidence            999965   45567887776422      2344777765443

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.53  E-value=7e-08  Score=83.09  Aligned_cols=111  Identities=19%  Similarity=0.350  Sum_probs=70.5

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhh---hc--------cccccccccccC--CCC
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALA---VK--------NGIIDDLVDEKG--CHE  241 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~---~~--------~~~~~~~~~~~~--~~~  241 (370)
                      +...+|.|||.|..|..-++.++++|++|.++|.+.............+-   +.        .+...+...+..  ..+
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~  106 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  106 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             cCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence            44568999999999999999999999999999987664211110000000   00        000000000000  012


Q ss_pred             CHHHHHhcCCEEEEeccC-ChhhhcccCHHHHhcCCCCcEEEEcC
Q 017490          242 DIFEFASKADVVVCCLSL-NKQTAGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       242 ~l~ell~~aDiV~l~lP~-t~~t~~li~~~~l~~mk~gailIN~s  285 (370)
                      .+.+.+++||+|+.++-. ......+|+++.++.||||+++||++
T Consensus       107 ~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDva  151 (183)
T d1l7da1         107 AVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA  151 (183)
T ss_dssp             HHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred             HHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEe
Confidence            355668899999976432 23355689999999999999999997

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.51  E-value=1e-07  Score=83.37  Aligned_cols=163  Identities=13%  Similarity=0.112  Sum_probs=96.7

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccc---cc---CCCCCHHHHHhcCC
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD---EK---GCHEDIFEFASKAD  251 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~l~ell~~aD  251 (370)
                      ++|+|||+|.+|.++|..++..|++|++||.+.+.-..-...  ..+..+....+...   ..   ....++++.++.||
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g--~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d   78 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQG--KSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSD   78 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTT--CCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCS
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhccc--CCcccchhhhhhhhhhhcccccccCCCHHHHHhhCC
Confidence            479999999999999999999999999999864321000000  00000000001000   00   02367889999999


Q ss_pred             EEEEeccCChhh---------hcccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh---CCceEEEEe-cCCCCC
Q 017490          252 VVVCCLSLNKQT---------AGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC---GHLGGLGID-VAWTEP  316 (370)
Q Consensus       252 iV~l~lP~t~~t---------~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~---g~i~ga~lD-V~~~EP  316 (370)
                      ++++|+|.....         ...++  ...++..+++.++|..|...+-..+.++..+.+   +...+--+. +|.+|-
T Consensus        79 ~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~~~~~~PE~  158 (202)
T d1mv8a2          79 VSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEF  158 (202)
T ss_dssp             EEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECCCC
T ss_pred             EEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccccccchhhhhh
Confidence            999999953111         11111  134566788999999999988888777665432   222111111 267888


Q ss_pred             CCCCCcc---cCCCceEEccCCCCccHHHHHHH
Q 017490          317 FDPNDPI---LKFKNVLITPHVGGVTEHSYRSM  346 (370)
Q Consensus       317 l~~~~pL---~~~~nvilTPHia~~t~~~~~~~  346 (370)
                      +.+.+.+   ...|++++    |+.+.++.+.+
T Consensus       159 ~~~G~a~~d~~~~~~iVi----G~~~~~~~~~~  187 (202)
T d1mv8a2         159 LRESTAIKDYDFPPMTVI----GELDKQTGDLL  187 (202)
T ss_dssp             CCTTSHHHHHHSCSCEEE----EESSHHHHHHH
T ss_pred             hcccchhhhhcCCCeEEE----EeCCHHHHHHH
Confidence            7776654   44555554    45566554443

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=98.48  E-value=1.5e-07  Score=82.55  Aligned_cols=107  Identities=19%  Similarity=0.272  Sum_probs=79.1

Q ss_pred             cccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHh-cCC
Q 017490          174 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFAS-KAD  251 (370)
Q Consensus       174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~-~aD  251 (370)
                      .|.|+||+|-|+|++|+.+|+.|..+|++|+++|.+.....                  .....+ ...+.++++. .||
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~------------------~~~~~g~~~~~~~~~~~~~~D   85 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVA------------------HAVALGHTAVALEDVLSTPCD   85 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHH------------------HHHHTTCEECCGGGGGGCCCS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHH------------------HHHhhcccccCccccccccce
Confidence            59999999999999999999999999999999997644310                  001111 2345667665 899


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      |++-|     .+.+.|+.+..++++- -+++..+.+++.+++ .-+.|+++.|.
T Consensus        86 I~iPc-----A~~~~I~~~~a~~i~a-k~i~e~AN~p~~~~~-~~~~L~~rgI~  132 (201)
T d1c1da1          86 VFAPC-----AMGGVITTEVARTLDC-SVVAGAANNVIADEA-ASDILHARGIL  132 (201)
T ss_dssp             EEEEC-----SCSCCBCHHHHHHCCC-SEECCSCTTCBCSHH-HHHHHHHTTCE
T ss_pred             eeecc-----cccccccHHHHhhhhh-heeeccCCCCcchhh-HHHHhcccceE
Confidence            88865     2567899999999874 466677777776664 46777777775

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=98.29  E-value=1e-07  Score=79.55  Aligned_cols=97  Identities=23%  Similarity=0.377  Sum_probs=64.7

Q ss_pred             ceEEEEecCchhHHHHHHhccCC-CEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCCEEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVV  254 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~  254 (370)
                      .+|||||+|+||+++++.|...| .+|.++||++++..                 .+..+++  ...+.++ +.+||+|+
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~-----------------~l~~~~~~~~~~~~~~-v~~~Div~   62 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRE-----------------RLEKELGVETSATLPE-LHSDDVLI   62 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHH-----------------HHHHHTCCEEESSCCC-CCTTSEEE
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHH-----------------Hhhhhccccccccccc-ccccceEE
Confidence            47999999999999999876555 89999999865421                 1112222  1233333 57899999


Q ss_pred             EeccCChhhhcccCHHHHhcCC-CCcEEEEcCCCcccCHHHHHHHHH
Q 017490          255 CCLSLNKQTAGIVNKSFLSSMK-KGSLLVNIARGGLLDYEAIAHYLE  300 (370)
Q Consensus       255 l~lP~t~~t~~li~~~~l~~mk-~gailIN~sRg~~vd~~aL~~aL~  300 (370)
                      ++++. .+..     +.++.++ .+.++|.+.-|-  ..+.|.+.|.
T Consensus        63 lavkP-~~~~-----~v~~~l~~~~~~viS~~ag~--~~~~l~~~l~  101 (152)
T d1yqga2          63 LAVKP-QDME-----AACKNIRTNGALVLSVAAGL--SVGTLSRYLG  101 (152)
T ss_dssp             ECSCH-HHHH-----HHHTTCCCTTCEEEECCTTC--CHHHHHHHTT
T ss_pred             EecCH-HHHH-----HhHHHHhhcccEEeecccCC--CHHHHHHHhC
Confidence            99972 2333     3344443 478999887774  5667777774

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.18  E-value=4.2e-07  Score=77.20  Aligned_cols=95  Identities=26%  Similarity=0.361  Sum_probs=71.3

Q ss_pred             cccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCE
Q 017490          174 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADV  252 (370)
Q Consensus       174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDi  252 (370)
                      -|++|+|+|||||.=|++-|..|+.-|++|++--|...+.         +        +.+.+.+ ...+++|..+.+|+
T Consensus        13 ~ik~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s---------~--------~~A~~~Gf~v~~~~eA~~~aDi   75 (182)
T d1np3a2          13 IIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSAT---------V--------AKAEAHGLKVADVKTAVAAADV   75 (182)
T ss_dssp             HHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHH---------H--------HHHHHTTCEEECHHHHHHTCSE
T ss_pred             HHCCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCcc---------H--------HHHhhhccccccHHHHhhhcCe
Confidence            4789999999999999999999999999998866654321         0        1111112 34689999999999


Q ss_pred             EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCC
Q 017490          253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg  287 (370)
                      |.+.+|... -..+...+....||+|+.|. .+.|
T Consensus        76 im~L~PD~~-q~~vy~~~I~p~lk~g~~L~-FaHG  108 (182)
T d1np3a2          76 VMILTPDEF-QGRLYKEEIEPNLKKGATLA-FAHG  108 (182)
T ss_dssp             EEECSCHHH-HHHHHHHHTGGGCCTTCEEE-ESCC
T ss_pred             eeeecchHH-HHHHHHHhhhhhcCCCcEEE-Eecc
Confidence            999999543 34466677889999999875 3444

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.15  E-value=7.6e-07  Score=76.98  Aligned_cols=170  Identities=9%  Similarity=0.044  Sum_probs=101.5

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHHhcCCEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKADVV  253 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~aDiV  253 (370)
                      ++|+|||+|.+|..+|..++ .|++|++||.+.+.-..-...  ..+..+....+......    ...+......++|++
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g--~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii   77 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINNG--LSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELV   77 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHTT--CCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEE
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhhc--ccccchhhHHHHhhhhhhhhhccchhhhhhhccccc
Confidence            47999999999999998775 699999999875431100000  00000000001111100    123556667899999


Q ss_pred             EEeccCChhhhc-ccC-------HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCccc-
Q 017490          254 VCCLSLNKQTAG-IVN-------KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPIL-  324 (370)
Q Consensus       254 ~l~lP~t~~t~~-li~-------~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~-  324 (370)
                      ++++|....... +.+       .+.+...+++.++|-.|.-.+-..+.+...+.+.++.      |.+|-+.+.+.++ 
T Consensus        78 ~v~vpt~~~~~~~~~~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt~~~~~~~~~~~~~~------~~PE~i~~G~ai~d  151 (196)
T d1dlja2          78 IIATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQTDRII------FSPEFLRESKALYD  151 (196)
T ss_dssp             EECCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHTTCSCEE------ECCCCCCTTSTTHH
T ss_pred             cccCCccccccCCCcceeEEeehhhhhhhcccceeEEeeeecCceeeeeeeeccchhhhc------cchhhcchhhhHhh
Confidence            999996543221 111       1223345788899999998888888898888777653      7889888777654 


Q ss_pred             --CCCceEEccCCCCccHHHHHHHHHHHHHHHHHHH
Q 017490          325 --KFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLH  358 (370)
Q Consensus       325 --~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~~  358 (370)
                        ..|++++--+-. .+. ......+.+++.+....
T Consensus       152 ~~~p~riv~G~~~~-~~~-~~~~~~~~~~~l~~~~~  185 (196)
T d1dlja2         152 NLYPSRIIVSCEEN-DSP-KVKADAEKFALLLKSAA  185 (196)
T ss_dssp             HHSCSCEEEECCTT-SCH-HHHHHHHHHHHHHHHHC
T ss_pred             ccCCCEEEEeCCHh-hHH-HHHHHHHHHHHHHHhhh
Confidence              456665543311 122 23344555566555543

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=98.13  E-value=1.4e-06  Score=72.53  Aligned_cols=98  Identities=19%  Similarity=0.180  Sum_probs=66.1

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccccc-CCCCCHHHHHhcCCEEEEe
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-GCHEDIFEFASKADVVVCC  256 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ell~~aDiV~l~  256 (370)
                      ++|+|||.|.||..+|..|...|++|..++|...........       ..   +..... ....+..+.+..+|+|+++
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~-------~~---~~~~~~~~~~~~~~~~~~~~D~iii~   70 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLV-------ET---DGSIFNESLTANDPDFLATSDLLLVT   70 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEE-------CT---TSCEEEEEEEESCHHHHHTCSEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccc-------cC---CccccccccccchhhhhcccceEEEe
Confidence            479999999999999999999999999999976542110000       00   000000 0123445677899999999


Q ss_pred             ccCChhhhcccCHHHHhcCCCCcEEEEcCCC
Q 017490          257 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       257 lP~t~~t~~li~~~~l~~mk~gailIN~sRg  287 (370)
                      ++. .+++..+ +.....+++++.++.+..|
T Consensus        71 vka-~~~~~~~-~~l~~~~~~~~~Iv~~qNG   99 (167)
T d1ks9a2          71 LKA-WQVSDAV-KSLASTLPVTTPILLIHNG   99 (167)
T ss_dssp             SCG-GGHHHHH-HHHHTTSCTTSCEEEECSS
T ss_pred             ecc-cchHHHH-HhhccccCcccEEeeccCc
Confidence            994 4555543 2344567789999888776

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.06  E-value=4.9e-08  Score=77.62  Aligned_cols=97  Identities=15%  Similarity=0.186  Sum_probs=65.2

Q ss_pred             cccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCC
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  251 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  251 (370)
                      .-+++||+|+|||.|.+|.+-|+.|..+|++|+++++...+.....      . ..+. .....+  .+  -++.+..++
T Consensus         7 ~l~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~------~-~~~~-i~~~~~--~~--~~~dl~~~~   74 (113)
T d1pjqa1           7 FCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVW------A-NEGM-LTLVEG--PF--DETLLDSCW   74 (113)
T ss_dssp             EECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHH------H-TTTS-CEEEES--SC--CGGGGTTCS
T ss_pred             EEEeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHH------H-hcCC-ceeecc--CC--CHHHhCCCc
Confidence            3579999999999999999999999999999999988654421100      0 0000 001110  11  124467889


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcC
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~s  285 (370)
                      +|+.+... +    -+|.+..+.+|+..++||++
T Consensus        75 lv~~at~d-~----~~n~~i~~~a~~~~ilVNv~  103 (113)
T d1pjqa1          75 LAIAATDD-D----TVNQRVSDAAESRRIFCNVV  103 (113)
T ss_dssp             EEEECCSC-H----HHHHHHHHHHHHTTCEEEET
T ss_pred             EEeecCCC-H----HHHHHHHHHHHHcCCEEEeC
Confidence            88877432 2    35667777788889999974

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=98.03  E-value=6.2e-06  Score=73.39  Aligned_cols=109  Identities=23%  Similarity=0.293  Sum_probs=78.7

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHH-hcC
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFA-SKA  250 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell-~~a  250 (370)
                      ..|.|+||.|-|+|++|+.+|+.|...|++|++.|.+....                 .......+ ...+.++++ ..|
T Consensus        35 ~~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~-----------------~~~~~~~g~~~~~~~~~~~~~c   97 (230)
T d1leha1          35 DSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAV-----------------SAAVAEEGADAVAPNAIYGVTC   97 (230)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHH-----------------HHHHHHHCCEECCGGGTTTCCC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHH-----------------HHHHHhcCCcccCCcccccccc
Confidence            56999999999999999999999999999999998764331                 01111111 223455555 489


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      ||++-|-     ..+.|+.+...+++- .+++-.+...+.+.++- +.|.+..|.
T Consensus        98 DIl~PcA-----~~~~I~~~~~~~l~a-k~Ive~ANn~~t~~ea~-~~L~~rGI~  145 (230)
T d1leha1          98 DIFAPCA-----LGAVLNDFTIPQLKA-KVIAGSADNQLKDPRHG-KYLHELGIV  145 (230)
T ss_dssp             SEEEECS-----CSCCBSTTHHHHCCC-SEECCSCSCCBSSHHHH-HHHHHHTCE
T ss_pred             cEecccc-----cccccChHHhhccCc-cEEEecccCCCCCchHH-HHHHhhCcE
Confidence            9998773     567888888888874 47777787888877664 556666564

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=98.03  E-value=1.3e-05  Score=67.48  Aligned_cols=131  Identities=18%  Similarity=0.337  Sum_probs=90.9

Q ss_pred             cccccCceEEEEecCc-hhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490          172 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  250 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~-IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  250 (370)
                      +.++.||++.|||-+. +|+++|..|...|++|+.++...                              .++.+.+++|
T Consensus        32 ~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t------------------------------~~l~~~~~~A   81 (166)
T d1b0aa1          32 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT------------------------------KNLRHHVENA   81 (166)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC------------------------------SCHHHHHHHC
T ss_pred             CcccccceEEEEeccccccHHHHHHHHHhhcccccccccc------------------------------chhHHHHhhh
Confidence            4679999999999987 99999999999999999886431                              3577889999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceE
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL  330 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi  330 (370)
                      |+|+.++..    .++|..+.   +|+|+++||++--.+.          +|++   .-||..++        ..-.--.
T Consensus        82 DivI~a~G~----p~~i~~~~---vk~g~vvIDvGi~~~~----------~~~~---~Gdvd~~~--------v~~~a~~  133 (166)
T d1b0aa1          82 DLLIVAVGK----PGFIPGDW---IKEGAIVIDVGINRLE----------NGKV---VGDVVFED--------AAKRASY  133 (166)
T ss_dssp             SEEEECSCC----TTCBCTTT---SCTTCEEEECCCEECT----------TSCE---ECSBCHHH--------HHHHCSE
T ss_pred             hHhhhhccC----cccccccc---cCCCcEEEecCceecC----------CCCE---EeccccHh--------HHhheeE
Confidence            999999873    35677664   6899999999754321          2333   22332110        1111237


Q ss_pred             EccCCCCccHHHHHHHHHHHHHHHHHHHcC
Q 017490          331 ITPHVGGVTEHSYRSMAKVVGDVALQLHAG  360 (370)
Q Consensus       331 lTPHia~~t~~~~~~~~~~~~~ni~~~~~g  360 (370)
                      +||=-||.-+-+...+.+.+++..+++.+.
T Consensus       134 ~TPvPGGVGP~Tva~L~~N~v~a~~~~~~~  163 (166)
T d1b0aa1         134 ITPVPGGVGPMTVATLIENTLQACVEYHDP  163 (166)
T ss_dssp             ECCSSSSSHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             eCCCCCcccHHHHHHHHHHHHHHHHHHhCc
Confidence            899888876555555556666666655543

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.98  E-value=3.1e-06  Score=64.52  Aligned_cols=39  Identities=23%  Similarity=0.315  Sum_probs=36.0

Q ss_pred             cccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          174 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      +++||+|+|+|+|..|+++|+.|...|++|+++|.+..+
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~   40 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSC
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCc
Confidence            578999999999999999999999999999999987654

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=3.7e-05  Score=65.01  Aligned_cols=136  Identities=18%  Similarity=0.259  Sum_probs=88.8

Q ss_pred             cccccCceEEEEecCc-hhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490          172 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  250 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~-IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  250 (370)
                      +.+++||++.|||-+. +|+++|..|...|++|..++.+.                              .++.+..+++
T Consensus        34 ~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t------------------------------~~l~~~~~~a   83 (170)
T d1a4ia1          34 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT------------------------------AHLDEEVNKG   83 (170)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------------------------SSHHHHHTTC
T ss_pred             CcccccceEEEEecCCccchHHHHHHHhccCceEEEeccc------------------------------ccHHHHHhhc
Confidence            5679999999999976 89999999999999999987542                              2567788999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceE
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL  330 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi  330 (370)
                      |+|+.+++.    .+++..+.   .|+|+++||++--.+.|....    ..+++.   -||-.++        ..-.--.
T Consensus        84 Divi~a~G~----~~~i~~~~---vk~g~iviDvgi~~~~~~~~~----~~~~~~---gdvd~~~--------v~~~a~~  141 (170)
T d1a4ia1          84 DILVVATGQ----PEMVKGEW---IKPGAIVIDCGINYVPDDKKP----NGRKVV---GDVAYDE--------AKERASF  141 (170)
T ss_dssp             SEEEECCCC----TTCBCGGG---SCTTCEEEECCCBC--------------CCB---CSBCHHH--------HTTTCSE
T ss_pred             cchhhcccc----cccccccc---ccCCCeEeccCcccccccccC----CCCEEe---cccchHh--------hhhhceE
Confidence            999999874    35677654   699999999986554432221    122232   2332111        1112345


Q ss_pred             EccCCCCccHHHHHHHHHHHHHHHHHHHc
Q 017490          331 ITPHVGGVTEHSYRSMAKVVGDVALQLHA  359 (370)
Q Consensus       331 lTPHia~~t~~~~~~~~~~~~~ni~~~~~  359 (370)
                      +||-=+|.=+-+..-+.+.+++..+++++
T Consensus       142 ~TPvPGGVGp~Tva~L~~N~v~a~~r~l~  170 (170)
T d1a4ia1         142 ITPVPGGVGPMTVAMLMQSTVESAKRFLE  170 (170)
T ss_dssp             ECCSSSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             eCCCCCchhHHHHHHHHHHHHHHHHHhhC
Confidence            89975665444455555666666666653

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=2.6e-06  Score=73.81  Aligned_cols=146  Identities=15%  Similarity=0.144  Sum_probs=87.1

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcccccccc-ccchhhhc--cccc------ccc----ccccCCCCCHH
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSC-QSSALAVK--NGII------DDL----VDEKGCHEDIF  244 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~-~~~~~~~~--~~~~------~~~----~~~~~~~~~l~  244 (370)
                      ++|+|||.|.||+.+|..+...|++|+.||++++....... ....+...  .+..      .+.    ........++.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~~   84 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA   84 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchhH
Confidence            68999999999999999999999999999998653211100 00000000  0000      000    00111245788


Q ss_pred             HHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCccc
Q 017490          245 EFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPIL  324 (370)
Q Consensus       245 ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~  324 (370)
                      +.+++||+|+=++|-+.+.+.-+-++.=+.++++++|...+.+  +....|.+.+.. +=+..++=-|.  |      -+
T Consensus        85 ~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~ig~Hffn--P------~~  153 (192)
T d1f0ya2          85 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSS--LQITSIANATTR-QDRFAGLHFFN--P------VP  153 (192)
T ss_dssp             HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSS--SCHHHHHTTSSC-GGGEEEEEECS--S------TT
T ss_pred             hhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcc--cccchhhhhccC-HhHEEeecccc--c------cC
Confidence            8999999999999988776654444555567888888655444  445556665543 33334444332  2      22


Q ss_pred             CCCceEEccC
Q 017490          325 KFKNVLITPH  334 (370)
Q Consensus       325 ~~~nvilTPH  334 (370)
                      .+|=|=+.||
T Consensus       154 ~~~lVEIv~g  163 (192)
T d1f0ya2         154 VMKLVEVIKT  163 (192)
T ss_dssp             TCCEEEEECC
T ss_pred             cccEEEEcCC
Confidence            3444556665

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=97.88  E-value=9.8e-06  Score=70.90  Aligned_cols=96  Identities=22%  Similarity=0.250  Sum_probs=64.4

Q ss_pred             cccC-ceEEEEecCchhHHHHHHhcc------CCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHH
Q 017490          174 TLLG-KTVFILGFGNIGVELAKRLRP------FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFE  245 (370)
Q Consensus       174 ~l~g-~tvGIiGlG~IG~~vA~~l~~------~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~e  245 (370)
                      -+.| |+|+|||||.-|++-|..|+.      .|.+|++-=|...+.. ....           .+.+.... ...+.+|
T Consensus        40 ~~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~-~kA~-----------~dGf~v~~~~v~~v~E  107 (226)
T d1qmga2          40 AFKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSF-AEAR-----------AAGFSEENGTLGDMWE  107 (226)
T ss_dssp             HTTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCH-HHHH-----------HTTCCGGGTCEEEHHH
T ss_pred             HhcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhH-HHHH-----------HcCCccCCCcccCHHH
Confidence            3678 899999999999999999998      5577755433322210 0000           01111111 2346889


Q ss_pred             HHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEE
Q 017490          246 FASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVN  283 (370)
Q Consensus       246 ll~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN  283 (370)
                      ..+.||+|.+.+|...+. .+. ++....||+|+.|.=
T Consensus       108 Av~~ADiVmiLlPDe~Q~-~vy-~~I~p~Lk~G~~L~F  143 (226)
T d1qmga2         108 TISGSDLVLLLISDSAQA-DNY-EKVFSHMKPNSILGL  143 (226)
T ss_dssp             HHHTCSEEEECSCHHHHH-HHH-HHHHHHSCTTCEEEE
T ss_pred             HHhhCCEEEEecchHHHH-HHH-HHHHHhcCCCceeee
Confidence            999999999999965443 355 468899999998763

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=97.83  E-value=1.7e-06  Score=74.54  Aligned_cols=132  Identities=16%  Similarity=0.105  Sum_probs=78.2

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccc-cchhhh--cccccc-cccccc---CCCCCHHHHHhcC
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSALAV--KNGIID-DLVDEK---GCHEDIFEFASKA  250 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~-~~~~~~--~~~~~~-~~~~~~---~~~~~l~ell~~a  250 (370)
                      ++|+|||.|.||+.+|..+...|++|..||++++........ ...+..  ..+... ......   ....+..+.+..|
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a   84 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNV   84 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTGGGC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccccccccc
Confidence            579999999999999999999999999999976532111000 000000  000000 000000   0011122347899


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecC
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVA  312 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~  312 (370)
                      |+|+-++|.+.+.+.=+-++.-+.++++++|...+.+-  ....|.+.+.. +=+..++=.|
T Consensus        85 dlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l--~i~~la~~~~~-p~r~~g~Hf~  143 (186)
T d1wdka3          85 DLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTI--SISLLAKALKR-PENFVGMHFF  143 (186)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSS--CHHHHGGGCSC-GGGEEEEECC
T ss_pred             ceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccc--cHHHHHHhccC-chheEeeccc
Confidence            99999999888777655566667789999987766554  44556665542 2333444433

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.82  E-value=1e-05  Score=68.93  Aligned_cols=107  Identities=21%  Similarity=0.177  Sum_probs=64.6

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCCCCHHHHHhcCCEEEEe
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVVCC  256 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~l~  256 (370)
                      ++|+|||.|.+|.++|..|...|.+|..|.|...+...  +.-+.-+.+......... ......++++.++.+|+|+++
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~--~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~a   78 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEIL--KSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLG   78 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHH--HHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHH--HHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcc
Confidence            47999999999999999999999999999874332100  000000000000000000 001346789999999999999


Q ss_pred             ccCChhhhcccCHHHHhcCCCCcEEEEcCCCcc
Q 017490          257 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL  289 (370)
Q Consensus       257 lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~  289 (370)
                      +|. ...+.++. +....+++. .+|.++.|..
T Consensus        79 vps-~~~~~~~~-~l~~~l~~~-~ii~~tkg~~  108 (180)
T d1txga2          79 VST-DGVLPVMS-RILPYLKDQ-YIVLISKGLI  108 (180)
T ss_dssp             SCG-GGHHHHHH-HHTTTCCSC-EEEECCCSEE
T ss_pred             cch-hhhHHHHH-hhccccccc-eecccccCcc
Confidence            993 45555543 344556655 5555666653

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=97.77  E-value=2.5e-06  Score=73.74  Aligned_cols=108  Identities=14%  Similarity=0.137  Sum_probs=66.6

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccc--ccccccCCCCCHHHHHhcCCE
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIID--DLVDEKGCHEDIFEFASKADV  252 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~ell~~aDi  252 (370)
                      +.=++|+|||.|..|.++|..|...|.+|..|+|+.+.... ..   ..+.......  .+........+++++++.+|+
T Consensus         5 ~~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~-i~---~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~   80 (189)
T d1n1ea2           5 LYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRL-VN---EKRENVLFLKGVQLASNITFTSDVEKAYNGAEI   80 (189)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHH-HH---HHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSC
T ss_pred             ceeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHH-Hh---hcccccccccccccccccccchhhhhccCCCCE
Confidence            34467999999999999999999999999999986432100 00   0000000000  010111123689999999999


Q ss_pred             EEEeccCChhhhcccCHH---H-HhcCCCCcEEEEcCCC
Q 017490          253 VVCCLSLNKQTAGIVNKS---F-LSSMKKGSLLVNIARG  287 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~---~-l~~mk~gailIN~sRg  287 (370)
                      |++++| +...+.++..-   . -...+++..+|+++-|
T Consensus        81 iiiavP-s~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKG  118 (189)
T d1n1ea2          81 ILFVIP-TQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKG  118 (189)
T ss_dssp             EEECSC-HHHHHHHHHHHCHHHHHHHHHHTCCEEECCCS
T ss_pred             EEEcCc-HHHHHHHHHHHHhhhhhhhccCCcEEEEEECC
Confidence            999999 34444444221   0 1123567789998877

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.76  E-value=4.7e-05  Score=64.45  Aligned_cols=105  Identities=19%  Similarity=0.293  Sum_probs=67.4

Q ss_pred             CcccccCceEEEEecCch-hHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHH
Q 017490          171 TGETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFA  247 (370)
Q Consensus       171 ~~~~l~g~tvGIiGlG~I-G~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell  247 (370)
                      .|.+++||++.|||-+.| |+++|..|...|+.|...+...... .....  .+...    ........  ..+.+++..
T Consensus        23 ~g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~-~~~~~--~~~~~----~~~~~~~~~~~~~~lk~~~   95 (171)
T d1edza1          23 EGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQK-FTRGE--SLKLN----KHHVEDLGEYSEDLLKKCS   95 (171)
T ss_dssp             TTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEE-EESCC--CSSCC----CCEEEEEEECCHHHHHHHH
T ss_pred             ccCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccc-ccccc--ceeee----eeccccccccchhHHhhcc
Confidence            467899999999998865 9999999999999999887542210 00000  00000    00000000  112377788


Q ss_pred             hcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490          248 SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       248 ~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~  288 (370)
                      .++|+|+.++|...   ..+..++   .|+|+++||++-..
T Consensus        96 ~~aDIvIsavG~p~---~~i~~d~---ik~GavvIDvGi~~  130 (171)
T d1edza1          96 LDSDVVITGVPSEN---YKFPTEY---IKEGAVCINFACTK  130 (171)
T ss_dssp             HHCSEEEECCCCTT---CCBCTTT---SCTTEEEEECSSSC
T ss_pred             ccCCEEEEccCCCc---cccChhh---cccCceEeeccccc
Confidence            89999999988431   1255443   68999999998654

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.68  E-value=1.1e-05  Score=64.92  Aligned_cols=74  Identities=15%  Similarity=0.279  Sum_probs=51.4

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccC---CCCCHHHH-HhcCCE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKG---CHEDIFEF-ASKADV  252 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~l~el-l~~aDi  252 (370)
                      |++.|+|+|.+|+.+|+.|...|.+|+++|.+++.......             .... -.+   ....|+++ +.+||.
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~-------------~~~~~~~gd~~~~~~l~~a~i~~a~~   67 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS-------------YATHAVIANATEENELLSLGIRNFEY   67 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTT-------------TCSEEEECCTTCTTHHHHHTGGGCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHH-------------hCCcceeeecccchhhhccCCccccE
Confidence            57899999999999999999999999999987654211110             0000 011   22345554 789999


Q ss_pred             EEEeccCChhhh
Q 017490          253 VVCCLSLNKQTA  264 (370)
Q Consensus       253 V~l~lP~t~~t~  264 (370)
                      |++++|....+.
T Consensus        68 vi~~~~~~~~~~   79 (134)
T d2hmva1          68 VIVAIGANIQAS   79 (134)
T ss_dssp             EEECCCSCHHHH
T ss_pred             EEEEcCchHHhH
Confidence            999998765543

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.55  E-value=2.1e-05  Score=65.36  Aligned_cols=112  Identities=15%  Similarity=0.149  Sum_probs=66.3

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCCEE
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVV  253 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV  253 (370)
                      ++|+|.|||.|.||+.+|+.|...|++|+++||+......-...   +.      ........  ....+++.+...|++
T Consensus         1 ~~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~---~~------~~~~~~~~~~~~~~~~~~i~~~~~~   71 (182)
T d1e5qa1           1 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAG---VQ------HSTPISLDVNDDAALDAEVAKHDLV   71 (182)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTT---CT------TEEEEECCTTCHHHHHHHHTTSSEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhc---cc------ccccccccccchhhhHhhhhcccee
Confidence            47899999999999999999999999999999987642111000   00      00000000  113456678889999


Q ss_pred             EEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 017490          254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG  302 (370)
Q Consensus       254 ~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g  302 (370)
                      +.++|.....  .+   .....+.+..+++++.-.. +...+.+.....
T Consensus        72 i~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~  114 (182)
T d1e5qa1          72 ISLIPYTFHA--TV---IKSAIRQKKHVVTTSYVSP-AMMELDQAAKDA  114 (182)
T ss_dssp             EECSCGGGHH--HH---HHHHHHHTCEEECSSCCCH-HHHHTHHHHHHT
T ss_pred             Eeeccchhhh--HH---HHHHHhhccceeecccCcH-HHHHHHHHhccc
Confidence            9988754221  11   1222345677777753321 233444444443

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.53  E-value=4.9e-05  Score=59.77  Aligned_cols=38  Identities=32%  Similarity=0.493  Sum_probs=34.5

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      ..+.+|||+|-|..|+.+|..++.+|++|+++|++...
T Consensus         9 ~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~   46 (111)
T d1kjqa2           9 PAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA   46 (111)
T ss_dssp             TTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence            45678999999999999999999999999999988664

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.47  E-value=7.6e-05  Score=63.44  Aligned_cols=111  Identities=17%  Similarity=0.203  Sum_probs=64.7

Q ss_pred             cccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  250 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  250 (370)
                      +.+++||+|.|+|.|..|++++..|...|. ++..++|+.............+......... ........++.+.+.++
T Consensus        13 ~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   91 (182)
T d1vi2a1          13 GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVT-VTDLADQQAFAEALASA   91 (182)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEE-EEETTCHHHHHHHHHTC
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceE-eeecccccchhhhhccc
Confidence            457899999999999999999999998898 6899999865421110000000000000000 00011123455678899


Q ss_pred             CEEEEeccCChhh---hcccCHHHHhcCCCCcEEEEcC
Q 017490          251 DVVVCCLSLNKQT---AGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       251 DiV~l~lP~t~~t---~~li~~~~l~~mk~gailIN~s  285 (370)
                      |+|+.+.|.....   ..++.  -+..++++.+++++.
T Consensus        92 diiIN~Tp~G~~~~~~~~~~~--~~~~~~~~~~v~Di~  127 (182)
T d1vi2a1          92 DILTNGTKVGMKPLENESLVN--DISLLHPGLLVTECV  127 (182)
T ss_dssp             SEEEECSSTTSTTSCSCCSCC--CGGGSCTTCEEEECC
T ss_pred             ceeccccCCccccccchhhhh--HHHhhhcchhhHHhh
Confidence            9999999964321   11111  134466766666664

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.44  E-value=0.00011  Score=61.67  Aligned_cols=101  Identities=13%  Similarity=0.124  Sum_probs=63.5

Q ss_pred             cccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHH-HHh
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFE-FAS  248 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~e-ll~  248 (370)
                      +..+.||+|.|+|.|..+++++..|...|++|.+++|+.++...-.              .......  ...++++ ...
T Consensus        13 ~~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~--------------~~~~~~~~~~~~~~~~~~~~   78 (170)
T d1nyta1          13 SFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELA--------------KLFAHTGSIQALSMDELEGH   78 (170)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHH--------------HHTGGGSSEEECCSGGGTTC
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHH--------------HHHhhccccccccccccccc
Confidence            3567899999999999999999999999999999999865421100              0001111  1112222 245


Q ss_pred             cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490          249 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  288 (370)
Q Consensus       249 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~  288 (370)
                      ++|+|+.|.|......  ...-.++.++++.+++++--.+
T Consensus        79 ~~dliIN~Tp~G~~~~--~~~~~~~~~~~~~~v~D~vY~P  116 (170)
T d1nyta1          79 EFDLIINATSSGISGD--IPAIPSSLIHPGIYCYDMFYQK  116 (170)
T ss_dssp             CCSEEEECCSCGGGTC--CCCCCGGGCCTTCEEEESCCCS
T ss_pred             ccceeecccccCcccC--CCCCcHHHhccCcEEEEeecCC
Confidence            7899999999753321  1111234466666666664443

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=97.41  E-value=0.00067  Score=60.27  Aligned_cols=126  Identities=22%  Similarity=0.160  Sum_probs=77.0

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcccccc--ccc--cchhhhccc-ccccccccc-C--CCCCHH
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQV--SCQ--SSALAVKNG-IIDDLVDEK-G--CHEDIF  244 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--~~~--~~~~~~~~~-~~~~~~~~~-~--~~~~l~  244 (370)
                      ..|.|+||.|=|+|++|+.+|+.|...|++|++++........+  .+.  ...+...++ ...+..... +  ...+.+
T Consensus        27 ~~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (242)
T d1v9la1          27 GGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPD  106 (242)
T ss_dssp             SCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhccCceEeeCcc
Confidence            36899999999999999999999999999998876432210000  000  000000000 000000000 1  112334


Q ss_pred             HHHh-cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceE
Q 017490          245 EFAS-KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGG  306 (370)
Q Consensus       245 ell~-~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~g  306 (370)
                      +++. .|||++-|-     +.+.|+.+...+++- .+++-.+.+++ ..++ .+.|.+..|..
T Consensus       107 ~i~~~~~DIliPcA-----~~~~I~~~~a~~i~a-k~IvegAN~p~-t~~a-~~~L~~rgI~~  161 (242)
T d1v9la1         107 AIFKLDVDIFVPAA-----IENVIRGDNAGLVKA-RLVVEGANGPT-TPEA-ERILYERGVVV  161 (242)
T ss_dssp             GGGGCCCSEEEECS-----CSSCBCTTTTTTCCC-SEEECCSSSCB-CHHH-HHHHHTTTCEE
T ss_pred             hhccccccEEeecc-----hhccccHHHHHhccc-CEEEecCCCCC-ChhH-HHHHHhCCeEE
Confidence            5554 899998774     456788888888864 57777888886 5666 48888887763

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.31  E-value=0.00075  Score=61.49  Aligned_cols=149  Identities=16%  Similarity=0.142  Sum_probs=86.5

Q ss_pred             hhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcccccc-
Q 017490          138 ASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQV-  216 (370)
Q Consensus       138 ~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~-  216 (370)
                      .+++--++..+-.++++......   .|     ....|.|+||.|=|+|++|+.+|+.|...|++|++++.+......+ 
T Consensus         5 eATG~GV~~~~~~~l~~~~~~~~---~g-----l~~~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~   76 (293)
T d1hwxa1           5 SATGRGVFHGIENFIENASYMSI---LG-----MTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPD   76 (293)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHH---HT-----CCSSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTT
T ss_pred             hHhHHHHHHHHHHHHHhcccchh---cc-----CCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhcccc
Confidence            45555555555555554322111   01     2347999999999999999999999999999998876432110000 


Q ss_pred             -cc--ccchhhhccccccccccccCCCCCHHHHHh-cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCH
Q 017490          217 -SC--QSSALAVKNGIIDDLVDEKGCHEDIFEFAS-KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDY  292 (370)
Q Consensus       217 -~~--~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~  292 (370)
                       .+  ....+...++.+.   .......+.++++. .|||++-|     .+.+.|+.+....++- .+++-.+.|++ ..
T Consensus        77 Gld~~~L~~~~~~~~~~~---~~~~~~~~~~~~~~~~~DIliPa-----A~~~~I~~~~a~~l~a-k~I~EgAN~P~-t~  146 (293)
T d1hwxa1          77 GIDPKELEDFKLQHGTIL---GFPKAKIYEGSILEVDCDILIPA-----ASEKQLTKSNAPRVKA-KIIAEGANGPT-TP  146 (293)
T ss_dssp             CCCHHHHHHHHHTTSSST---TCTTSCBCCSCGGGCCCSEEEEC-----SSSSCBCTTTGGGCCC-SEEECCSSSCB-CH
T ss_pred             ccchHHHHHHHHHcCCee---cccccccCCcccccCCccEEeec-----cccccccHHHHHHHhh-CEEeccCCCCC-Cc
Confidence             00  0000000010000   00011112234444 89999876     3567888888888864 47788888885 44


Q ss_pred             HHHHHHHHhCCce
Q 017490          293 EAIAHYLECGHLG  305 (370)
Q Consensus       293 ~aL~~aL~~g~i~  305 (370)
                      ++ .+.|.+..|.
T Consensus       147 eA-~~~L~~~gI~  158 (293)
T d1hwxa1         147 QA-DKIFLERNIM  158 (293)
T ss_dssp             HH-HHHHHHTTCE
T ss_pred             ch-HHHHHHCCCE
Confidence            55 4778777775

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.27  E-value=6.1e-05  Score=63.00  Aligned_cols=99  Identities=22%  Similarity=0.236  Sum_probs=61.2

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEE
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  255 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  255 (370)
                      .|.+|.|+|.|.+|...++.++.+|++|+++|+++.+.......        + ++..+.........+......|+++.
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~l--------G-a~~~i~~~~~~~~~~~~~~~~d~vi~   97 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM--------G-ADHYIATLEEGDWGEKYFDTFDLIVV   97 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH--------T-CSEEEEGGGTSCHHHHSCSCEEEEEE
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhcc--------C-CcEEeeccchHHHHHhhhcccceEEE
Confidence            58899999999999999999999999999999886652111000        0 00001000011112334456788888


Q ss_pred             eccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          256 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       256 ~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                      ++......  .+ ...++.++++..++.++-
T Consensus        98 ~~~~~~~~--~~-~~~~~~l~~~G~iv~~G~  125 (168)
T d1piwa2          98 CASSLTDI--DF-NIMPKAMKVGGRIVSISI  125 (168)
T ss_dssp             CCSCSTTC--CT-TTGGGGEEEEEEEEECCC
T ss_pred             EecCCccc--hH-HHHHHHhhccceEEEecc
Confidence            76543211  12 245677888888888853

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.27  E-value=0.0013  Score=58.09  Aligned_cols=123  Identities=21%  Similarity=0.178  Sum_probs=78.1

Q ss_pred             cccccCceEEEEecCchhHHHHHHhc-cCCCEEEEEcCCCcccccc--cc--ccchhhhccccccccccccC-CCCCHHH
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLR-PFGVKIIATKRSWASHSQV--SC--QSSALAVKNGIIDDLVDEKG-CHEDIFE  245 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~-~~G~~V~~~dr~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~-~~~~l~e  245 (370)
                      +.++.|++|.|=|+|++|+.+|+.|. ..|++|++++.+......+  .+  ....+...++.   ...... ...+.++
T Consensus        26 ~~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~---~~~~~~~~~~~~~~  102 (234)
T d1b26a1          26 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGT---VVTYPKGERITNEE  102 (234)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSC---STTCSSCEEECHHH
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcc---eeccccceeecccc
Confidence            45789999999999999999999985 6899999876432110000  00  00000000000   000001 2235567


Q ss_pred             HHh-cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          246 FAS-KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       246 ll~-~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      ++. .|||++-|     ...+.|+.+...+++- .+++-.+.+++ ..++ .+.|.+..|.
T Consensus       103 ~~~~~~DI~~Pc-----A~~~~I~~~~a~~l~~-~~I~e~AN~p~-t~~a-~~~L~~rgI~  155 (234)
T d1b26a1         103 LLELDVDILVPA-----ALEGAIHAGNAERIKA-KAVVEGANGPT-TPEA-DEILSRRGIL  155 (234)
T ss_dssp             HHTSCCSEEEEC-----SCTTCBCHHHHTTCCC-SEEECCSSSCB-CHHH-HHHHHHTTCE
T ss_pred             ccccccceeecc-----hhcccccHHHHHHhhh-ceEeecCCCCC-CHHH-HHHHHHCCeE
Confidence            776 99999776     3567899999999985 47888888886 4444 5778888776

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.0004  Score=57.84  Aligned_cols=92  Identities=23%  Similarity=0.355  Sum_probs=60.8

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhcccccccc-ccccC--CCCCHHHHH----
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDL-VDEKG--CHEDIFEFA----  247 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~l~ell----  247 (370)
                      .|.+|.|+|.|.||...++.++.+|+ +|++.|++..+.....              ++ ++...  ...+..+..    
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~--------------~~Ga~~~~~~~~~~~~~~~~~~~   91 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK--------------EIGADLVLQISKESPQEIARKVE   91 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH--------------HTTCSEEEECSSCCHHHHHHHHH
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHH--------------HhCCccccccccccccccccccc
Confidence            47799999999999999999999999 7999998765421110              00 11111  123333332    


Q ss_pred             ----hcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          248 ----SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       248 ----~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                          ...|+|+-+++. +.+   + ...++.+++|..++.++-
T Consensus        92 ~~~g~g~Dvvid~~G~-~~~---~-~~a~~~~~~gG~iv~~G~  129 (171)
T d1pl8a2          92 GQLGCKPEVTIECTGA-EAS---I-QAGIYATRSGGTLVLVGL  129 (171)
T ss_dssp             HHHTSCCSEEEECSCC-HHH---H-HHHHHHSCTTCEEEECSC
T ss_pred             ccCCCCceEEEeccCC-chh---H-HHHHHHhcCCCEEEEEec
Confidence                247999888774 222   1 356777899988887764

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.16  E-value=0.0004  Score=57.61  Aligned_cols=37  Identities=32%  Similarity=0.546  Sum_probs=33.8

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      .|.+|.|+|.|.||...++.++.+|++|+++|++..+
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r   62 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRR   62 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCEEEEEcccccchhhHhhHhhhcccccccchHHHH
Confidence            5779999999999999999999999999999987654

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.13  E-value=0.0024  Score=56.46  Aligned_cols=121  Identities=26%  Similarity=0.293  Sum_probs=74.7

Q ss_pred             cccCceEEEEecCchhHHHHHHhc-cCCCEEEEEcCCCcccccc--ccc--cchhhhcccccccccccc-C-CCCCHHHH
Q 017490          174 TLLGKTVFILGFGNIGVELAKRLR-PFGVKIIATKRSWASHSQV--SCQ--SSALAVKNGIIDDLVDEK-G-CHEDIFEF  246 (370)
Q Consensus       174 ~l~g~tvGIiGlG~IG~~vA~~l~-~~G~~V~~~dr~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~-~-~~~~l~el  246 (370)
                      .|.|+||.|-|+|++|+.+|+.|. .+|++|++..........+  .+.  ...+...++    ....+ + ...+.+++
T Consensus        29 ~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~----~~~~~~~~~~~~~~~i  104 (239)
T d1gtma1          29 TLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHG----SVKDFPGATNITNEEL  104 (239)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHS----SSTTCTTSEEECHHHH
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhcc----ccccCCCCeeeccccc
Confidence            489999999999999999999885 6899998765432210000  000  000000000    00000 1 12245666


Q ss_pred             Hh-cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceE
Q 017490          247 AS-KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGG  306 (370)
Q Consensus       247 l~-~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~g  306 (370)
                      +. .|||++-|.     +.+.|+.+....++- .+++-.+.+++- .++ .+.|.+..|..
T Consensus       105 ~~~~~DIl~PcA-----~~~~I~~~~a~~i~a-k~I~e~AN~p~t-~ea-~~~L~~rgI~~  157 (239)
T d1gtma1         105 LELEVDVLAPAA-----IEEVITKKNADNIKA-KIVAEVANGPVT-PEA-DEILFEKGILQ  157 (239)
T ss_dssp             HHSCCSEEEECS-----CSCCBCTTGGGGCCC-SEEECCSSSCBC-HHH-HHHHHHTTCEE
T ss_pred             ccccccEEeecc-----ccccccHHHHHhccc-cEEEecCCCCCC-HHH-HHHHHHCCCEE
Confidence            54 899998773     457788888888864 477788888864 444 57788777763

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=97.12  E-value=0.00025  Score=58.76  Aligned_cols=66  Identities=15%  Similarity=0.141  Sum_probs=45.4

Q ss_pred             ceEEEEecCchhHH-HHHHhccC-CCEEE-EEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCCE
Q 017490          178 KTVFILGFGNIGVE-LAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADV  252 (370)
Q Consensus       178 ~tvGIiGlG~IG~~-vA~~l~~~-G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDi  252 (370)
                      .+|||||+|.+|+. .+..++.. +++++ ++|++.....                 .....++  ...++++++++.|+
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~-----------------~~~~~~~~~~~~~~~~l~~~~D~   64 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKAL-----------------PICESWRIPYADSLSSLAASCDA   64 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHH-----------------HHHHHHTCCBCSSHHHHHTTCSE
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhh-----------------hhhhcccccccccchhhhhhccc
Confidence            37999999999986 46666554 77765 5777655421                 1111222  34678899999999


Q ss_pred             EEEeccCC
Q 017490          253 VVCCLSLN  260 (370)
Q Consensus       253 V~l~lP~t  260 (370)
                      |++++|..
T Consensus        65 V~I~tp~~   72 (164)
T d1tlta1          65 VFVHSSTA   72 (164)
T ss_dssp             EEECSCTT
T ss_pred             ccccccch
Confidence            99999854

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.11  E-value=0.00026  Score=56.63  Aligned_cols=92  Identities=17%  Similarity=0.232  Sum_probs=56.1

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCC---HHHH-HhcCCEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHED---IFEF-ASKADVV  253 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~el-l~~aDiV  253 (370)
                      ++|.|+|+|.+|+.+|+.|...|.+|+++|.++.........   +        ....-.+...+   ++++ +.++|.+
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~---~--------~~~vi~Gd~~~~~~l~~~~i~~a~~v   69 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE---I--------DALVINGDCTKIKTLEDAGIEDADMY   69 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---C--------SSEEEESCTTSHHHHHHTTTTTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh---h--------hhhhccCcccchhhhhhcChhhhhhh
Confidence            478999999999999999999999999999876532110000   0        00000112223   3332 5789999


Q ss_pred             EEeccCChhhhcccCHHHHhcCCCCcEEE
Q 017490          254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLV  282 (370)
Q Consensus       254 ~l~lP~t~~t~~li~~~~l~~mk~gailI  282 (370)
                      +.+.+..+.  +++-....+.+.+..++.
T Consensus        70 v~~t~~d~~--N~~~~~~~k~~~~~~iI~   96 (132)
T d1lssa_          70 IAVTGKEEV--NLMSSLLAKSYGINKTIA   96 (132)
T ss_dssp             EECCSCHHH--HHHHHHHHHHTTCCCEEE
T ss_pred             cccCCcHHH--HHHHHHHHHHcCCceEEE
Confidence            888775432  334344455566665554

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.10  E-value=0.00029  Score=60.06  Aligned_cols=41  Identities=24%  Similarity=0.413  Sum_probs=37.5

Q ss_pred             cccccCceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          172 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       172 ~~~l~g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      +.+|+||++.|.| -|.||+.+|+.|...|++|+..+|+..+
T Consensus        18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~   59 (191)
T d1luaa1          18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDK   59 (191)
T ss_dssp             TSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHH
Confidence            5789999999999 6999999999999999999999998644

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.09  E-value=0.00016  Score=61.09  Aligned_cols=38  Identities=32%  Similarity=0.380  Sum_probs=33.9

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCcc
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  212 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~  212 (370)
                      -.|.+|.|+|.|.||...++.++.+|+ +|++.|+++.+
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~   65 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNR   65 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHH
T ss_pred             CCCCEEEEECCCccchhheeccccccccccccccccccc
Confidence            368999999999999999999999998 79999987544

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=97.05  E-value=0.00032  Score=65.49  Aligned_cols=93  Identities=16%  Similarity=0.254  Sum_probs=65.8

Q ss_pred             CceEEEEecCchhHHHHHHhc-cCCC-EEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHHhcC
Q 017490          177 GKTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKA  250 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~-~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~a  250 (370)
                      -++++|||.|..++.-++.+. -++. +|.+|+|++.....-.             ..+....+    ...++++.++.|
T Consensus       128 a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~-------------~~l~~~~g~~v~~~~s~~eav~~A  194 (340)
T d1x7da_         128 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLI-------------ANLKEYSGLTIRRASSVAEAVKGV  194 (340)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHH-------------HHHTTCTTCEEEECSSHHHHHTTC
T ss_pred             CceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHH-------------HhhhhccCCCceecCCHHHHHhcC
Confidence            468999999999998888664 4665 7999999865421100             01111111    246899999999


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                      |+|++|++ ++.+..+++.+   .+|||+.+..+|.
T Consensus       195 DIi~t~Ta-s~s~~Pv~~~~---~l~pG~hI~aiGs  226 (340)
T d1x7da_         195 DIITTVTA-DKAYATIITPD---MLEPGMHLNAVGG  226 (340)
T ss_dssp             SEEEECCC-CSSEEEEECGG---GCCTTCEEEECSC
T ss_pred             Cceeeccc-cCCCCcccchh---hcCCCCEEeeccc
Confidence            99999876 34556788765   4799999998875

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=0.00027  Score=51.78  Aligned_cols=35  Identities=26%  Similarity=0.419  Sum_probs=32.6

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      |||||+|-|..|+.++..++.+|++|+++|+....
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~   36 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEP   36 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence            69999999999999999999999999999987654

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.00038  Score=59.51  Aligned_cols=74  Identities=16%  Similarity=0.146  Sum_probs=50.9

Q ss_pred             cCceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCCCCHHHHHhcCCEE
Q 017490          176 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVV  253 (370)
Q Consensus       176 ~g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV  253 (370)
                      ..|+|.|+| .|.||+.+++.|...|++|.++.|++.+.......        +  .+.+. .....++++++++.+|+|
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~--------~--~~~~~gD~~d~~~l~~al~~~d~v   71 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPR--------P--AHVVVGDVLQAADVDKTVAGQDAV   71 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCC--------C--SEEEESCTTSHHHHHHHHTTCSEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhccccccc--------c--cccccccccchhhHHHHhcCCCEE
Confidence            468999999 69999999999999999999999976552111000        0  01110 011234567789999999


Q ss_pred             EEeccC
Q 017490          254 VCCLSL  259 (370)
Q Consensus       254 ~l~lP~  259 (370)
                      +.++..
T Consensus        72 i~~~g~   77 (205)
T d1hdoa_          72 IVLLGT   77 (205)
T ss_dssp             EECCCC
T ss_pred             EEEecc
Confidence            998864

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=96.96  E-value=0.00029  Score=58.97  Aligned_cols=84  Identities=17%  Similarity=0.236  Sum_probs=52.3

Q ss_pred             CceEEEEecCchhHHHHHHhccC-CCEEE-EEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEE
Q 017490          177 GKTVFILGFGNIGVELAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  254 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~-G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  254 (370)
                      ..+|||||+|.||+.+++.++.. +++++ ++|++......                  . ......+.++++.+.|+|+
T Consensus         3 kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~~------------------~-~~~~~~~~~~~~~~~D~Vv   63 (170)
T d1f06a1           3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTK------------------T-PVFDVADVDKHADDVDVLF   63 (170)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSS------------------S-CEEEGGGGGGTTTTCSEEE
T ss_pred             cceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccccc------------------c-ccccchhhhhhccccceEE
Confidence            35799999999999999999875 67765 55655433110                  0 0002245666778899999


Q ss_pred             EeccCChhhhcccCHHHHhcCCCCcEEEEc
Q 017490          255 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNI  284 (370)
Q Consensus       255 l~lP~t~~t~~li~~~~l~~mk~gailIN~  284 (370)
                      +++|...-..     -..+.++.|.-+|.+
T Consensus        64 i~tp~~~h~~-----~a~~aL~aG~~vv~~   88 (170)
T d1f06a1          64 LCMGSATDIP-----EQAPKFAQFACTVDT   88 (170)
T ss_dssp             ECSCTTTHHH-----HHHHHHTTTSEEECC
T ss_pred             EeCCCcccHH-----HHHHHHHCCCcEEEe
Confidence            9998653211     123335556555533

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=96.95  E-value=0.0017  Score=58.01  Aligned_cols=128  Identities=20%  Similarity=0.246  Sum_probs=70.1

Q ss_pred             cccccCceEEEEecCchhHHHHHHhccCCCEEEEEcC--------CCccccccccccchhhh-ccccccccccccC-CCC
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR--------SWASHSQVSCQSSALAV-KNGIIDDLVDEKG-CHE  241 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr--------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~  241 (370)
                      +..|.|+||.|=|+|++|+.+|+.|...|++|+++..        ..-..........+... ......+.....+ ...
T Consensus        31 ~~~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (255)
T d1bgva1          31 NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFF  110 (255)
T ss_dssp             TCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEE
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCceee
Confidence            3578999999999999999999999999999986532        21110000000000000 0000000000000 011


Q ss_pred             CHHHHH-hcCCEEEEeccCChhhhcccCHHHHhcCCC-Cc-EEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          242 DIFEFA-SKADVVVCCLSLNKQTAGIVNKSFLSSMKK-GS-LLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       242 ~l~ell-~~aDiV~l~lP~t~~t~~li~~~~l~~mk~-ga-ilIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      +.++++ ..|||++-|     .+.+.|+.+..++++. |+ +++--+.+++-. ++.-..|+++.|.
T Consensus       111 ~~~~~~~~~~DiliPc-----A~~~~I~~~~a~~l~a~~ck~I~EgAN~p~t~-ea~~~ll~~~gI~  171 (255)
T d1bgva1         111 PGEKPWGQKVDIIMPC-----ATQNDVDLEQAKKIVANNVKYYIEVANMPTTN-EALRFLMQQPNMV  171 (255)
T ss_dssp             ETCCGGGSCCSEEECC-----SCTTCBCHHHHHHHHHTTCCEEECCSSSCBCH-HHHHHHHHCTTCE
T ss_pred             chhhcccccccEEeec-----cccccccHHHHHhhhhcCceEEecCCCCCcch-HHHHHHHHhcCCE
Confidence            112222 479988754     4667888887777753 34 666666776544 4444456666665

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.89  E-value=8.2e-05  Score=62.75  Aligned_cols=40  Identities=20%  Similarity=0.213  Sum_probs=35.7

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      ..+.||+|.|+|.|..|++++..|...+.+|.+++|+.++
T Consensus        14 ~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~   53 (171)
T d1p77a1          14 WLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSK   53 (171)
T ss_dssp             CCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHH
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHH
Confidence            4678999999999999999999988877899999998654

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.87  E-value=0.00017  Score=60.81  Aligned_cols=81  Identities=16%  Similarity=0.162  Sum_probs=52.2

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCE
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  252 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  252 (370)
                      .+++||+|.|+|.|..+++++..|...| +|.+++|+.++......   .+.....  .... ......+++..+..+|+
T Consensus        14 ~~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~---~~~~~~~--~~~~-~~~~~~~~~~~~~~~dl   86 (177)
T d1nvta1          14 GRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAK---EIAEKLN--KKFG-EEVKFSGLDVDLDGVDI   86 (177)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHH---HHHHHHT--CCHH-HHEEEECTTCCCTTCCE
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHH---HHHHhhc--hhhh-hhhhhhhhhhccchhhh
Confidence            4689999999999999999999998888 99999998655211000   0000000  0000 00012345556678999


Q ss_pred             EEEeccCC
Q 017490          253 VVCCLSLN  260 (370)
Q Consensus       253 V~l~lP~t  260 (370)
                      ++++.|..
T Consensus        87 iIn~tp~g   94 (177)
T d1nvta1          87 IINATPIG   94 (177)
T ss_dssp             EEECSCTT
T ss_pred             hccCCccc
Confidence            99998864

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=96.81  E-value=0.0019  Score=57.15  Aligned_cols=64  Identities=20%  Similarity=0.282  Sum_probs=56.8

Q ss_pred             CCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          241 EDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       241 ~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      .+..|.+++||+|++++|..+.+..++ .+....+++|++++|+|.........+.+.+++..+.
T Consensus       133 ~d~~Eav~~ADiII~~vP~~~~v~~Vi-~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~  196 (242)
T d2b0ja2         133 SDDREAVEGADIVITWLPKGNKQPDII-KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLN  196 (242)
T ss_dssp             SCHHHHHTTCSEEEECCTTCTTHHHHH-HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSE
T ss_pred             CCHHHHHhcCCeEEEeeecHHHHHHHH-HHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCE
Confidence            688899999999999999777777777 5788899999999999999988888899999887776

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.77  E-value=0.00051  Score=56.06  Aligned_cols=39  Identities=23%  Similarity=0.442  Sum_probs=35.3

Q ss_pred             cccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCC
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      ..+|+||+|.|||.|.+|.+-|+.|...|++|.++++..
T Consensus         8 ~~~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~~   46 (150)
T d1kyqa1           8 AHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (150)
T ss_dssp             EECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             heeeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            457999999999999999999999999999999997543

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.00063  Score=56.45  Aligned_cols=37  Identities=30%  Similarity=0.378  Sum_probs=33.5

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      .|.+|.|+|.|.||...++.++.+|+++++++++..+
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~   66 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAK   66 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGG
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccccchhhccchhH
Confidence            5889999999999999999999999999999886554

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.69  E-value=0.0014  Score=54.08  Aligned_cols=105  Identities=13%  Similarity=0.102  Sum_probs=62.7

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC---CCCCHHHHHhcCC
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFASKAD  251 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~~aD  251 (370)
                      +-++|+|||.|.+|+.+|..++..|. ++..+|.+....... .  .++...    ........   ...+.++.++.||
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~-a--~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~ad   78 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGK-A--LDLSHV----TSVVDTNVSVRAEYSYEAALTGAD   78 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHH-H--HHHHHH----HHHTTCCCCEEEECSHHHHHTTCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhH-H--HHHhhh----ccccCCeeEEeccCchhhhhcCCC
Confidence            45799999999999999988776665 899999876432110 0  011000    00000000   1245678899999


Q ss_pred             EEEEeccC--Ch------hhhc-cc--CH-------HHHhcCCCCcEEEEcCCC
Q 017490          252 VVVCCLSL--NK------QTAG-IV--NK-------SFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       252 iV~l~lP~--t~------~t~~-li--~~-------~~l~~mk~gailIN~sRg  287 (370)
                      +|+++...  .+      .++. ++  |.       +.+....|.+++++++..
T Consensus        79 iVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsNP  132 (154)
T d1pzga1          79 CVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNP  132 (154)
T ss_dssp             EEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred             eEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCCc
Confidence            99998742  11      1322 22  11       124455789999998765

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.69  E-value=0.00033  Score=57.90  Aligned_cols=35  Identities=37%  Similarity=0.523  Sum_probs=31.8

Q ss_pred             ceEEEE-ecCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          178 KTVFIL-GFGNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       178 ~tvGIi-GlG~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      +||+|| |.|.||+.+|++|...|++|.+++|++++
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~   36 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEK   36 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            479999 89999999999999999999999997654

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=96.68  E-value=0.0005  Score=57.02  Aligned_cols=107  Identities=14%  Similarity=0.180  Sum_probs=61.6

Q ss_pred             ceEEEEecCchhHH-HHHHhccC-CCEEEEEcCCCccccccccccchhhhccccccccccccC---CCCCHHHHHh-cCC
Q 017490          178 KTVFILGFGNIGVE-LAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFAS-KAD  251 (370)
Q Consensus       178 ~tvGIiGlG~IG~~-vA~~l~~~-G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~-~aD  251 (370)
                      .+|||||+|.+|+. ....++.. ++++.++|+++....                 .....++   .+.+.+++++ +.|
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~-----------------~~~~~~~~~~~~~~~~~ll~~~iD   64 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLG-----------------TLATRYRVSATCTDYRDVLQYGVD   64 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHH-----------------HHHHHTTCCCCCSSTTGGGGGCCS
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHH-----------------HHHHhcccccccccHHHhcccccc
Confidence            47999999999976 56677655 668888988754421                 1111111   2456677765 679


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcC-CCcccCHHHHHHHHHhCCce
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA-RGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~s-Rg~~vd~~aL~~aL~~g~i~  305 (370)
                      +|++++|......  +-...++.=|  .+++.-= --.+-+.+.|.++.++..+.
T Consensus        65 ~V~I~tp~~~H~~--~~~~al~~gk--~V~~EKP~~~~~~e~~~l~~~a~~~~~~  115 (167)
T d1xeaa1          65 AVMIHAATDVHST--LAAFFLHLGI--PTFVDKPLAASAQECENLYELAEKHHQP  115 (167)
T ss_dssp             EEEECSCGGGHHH--HHHHHHHTTC--CEEEESCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             eeccccccccccc--cccccccccc--ccccCCCCcCCHHHHHHHHHHHHHcCCE
Confidence            9999998542222  2223333222  2444321 12224456677777766554

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.66  E-value=0.00044  Score=58.11  Aligned_cols=37  Identities=22%  Similarity=0.397  Sum_probs=33.3

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCcc
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  212 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~  212 (370)
                      .|.+|.|+|.|.||...++.++.+|+ +|++.|++.++
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r   64 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPIC   64 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHH
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccchhhh
Confidence            57899999999999999999999998 79999987654

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.57  E-value=0.0022  Score=50.26  Aligned_cols=100  Identities=16%  Similarity=0.276  Sum_probs=69.5

Q ss_pred             ceEEEEec----CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEE
Q 017490          178 KTVFILGF----GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  253 (370)
Q Consensus       178 ~tvGIiGl----G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  253 (370)
                      |+|+|||.    |..|..+.+.|+..|++|+.++++.+.-                  ....   .+.++.++-..-|++
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i------------------~G~~---~y~sl~~lp~~~D~v   60 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI------------------EGLK---CYRSVRELPKDVDVI   60 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE------------------TTEE---CBSSGGGSCTTCCEE
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccc------------------cCcc---ccccchhccccceEE
Confidence            68999994    6889999999999999999998764320                  1111   456788887888999


Q ss_pred             EEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       254 ~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      ++++|. +.+..++.+ .. .+...++++..+   . ..+++.+.+++..+.
T Consensus        61 vi~vp~-~~~~~~l~~-~~-~~g~k~v~~~~g---~-~~~~~~~~a~~~gi~  105 (116)
T d1y81a1          61 VFVVPP-KVGLQVAKE-AV-EAGFKKLWFQPG---A-ESEEIRRFLEKAGVE  105 (116)
T ss_dssp             EECSCH-HHHHHHHHH-HH-HTTCCEEEECTT---S-CCHHHHHHHHHHTCE
T ss_pred             EEEeCH-HHHHHHHHH-HH-hcCCceEEeccc---h-hhHHHHHHHHHcCCE
Confidence            999994 445555542 22 244456776543   2 345677888877665

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.54  E-value=0.00085  Score=61.94  Aligned_cols=91  Identities=18%  Similarity=0.167  Sum_probs=63.1

Q ss_pred             CceEEEEecCchhHHHHHHhcc-CCC-EEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEE
Q 017490          177 GKTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVV  253 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~-~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV  253 (370)
                      -+++||||.|..++.-++.+.. +.. +|.+|+|+.+....       +.      ........ ...+.++.+..||+|
T Consensus       125 ~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~-------~~------~~~~~~~~~~~~~~~~a~~~aDiV  191 (320)
T d1omoa_         125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKK-------FV------SYCEDRGISASVQPAEEASRCDVL  191 (320)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHH-------HH------HHHHHTTCCEEECCHHHHTSSSEE
T ss_pred             ccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHH-------HH------HHHHhcCCccccchhhhhccccEE
Confidence            3589999999999999888764 555 79999998654211       00      00101101 123566778999999


Q ss_pred             EEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       254 ~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                      +.+.|   ++..+++.+   .+|||+.++.++.
T Consensus       192 ~taT~---s~~P~~~~~---~l~~G~hv~~iGs  218 (320)
T d1omoa_         192 VTTTP---SRKPVVKAE---WVEEGTHINAIGA  218 (320)
T ss_dssp             EECCC---CSSCCBCGG---GCCTTCEEEECSC
T ss_pred             EEecc---Ccccccchh---hcCCCCeEeecCC
Confidence            99855   566788765   4799999999975

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.48  E-value=0.00092  Score=55.11  Aligned_cols=37  Identities=27%  Similarity=0.347  Sum_probs=33.7

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      .|.+|.|+|.|.||...++.++.+|++|+++|+++.+
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~   63 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAK   63 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCCccceecchhhH
Confidence            4789999999999999999999999999999987544

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.43  E-value=0.00033  Score=58.52  Aligned_cols=37  Identities=16%  Similarity=0.265  Sum_probs=33.6

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCcc
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  212 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~  212 (370)
                      ++++|.|+|.|..|++++..|+..|+ +|.+++|+.++
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~k   53 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKT   53 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHH
Confidence            57899999999999999999999998 79999998654

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=96.43  E-value=0.0013  Score=53.28  Aligned_cols=103  Identities=12%  Similarity=0.142  Sum_probs=59.9

Q ss_pred             ceEEEEecCchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCCEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVV  253 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV  253 (370)
                      .+|+|||.|.+|..+|..+...|.  ++..||.......... .  ++...    ........  ...+..+.+++||+|
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~-~--d~~~~----~~~~~~~~~i~~~~~~~~~~dadvv   73 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKA-L--DMYES----GPVGLFDTKVTGSNDYADTANSDIV   73 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHH-H--HHHTT----HHHHTCCCEEEEESCGGGGTTCSEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhh-h--hhhcc----cchhcccceEEecCCHHHhcCCeEE
Confidence            379999999999999999887664  8999998765421110 0  00000    00000000  112445678999999


Q ss_pred             EEec--cCChh-hhc-cc--CH-------HHHhcCCCCcEEEEcCCC
Q 017490          254 VCCL--SLNKQ-TAG-IV--NK-------SFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       254 ~l~l--P~t~~-t~~-li--~~-------~~l~~mk~gailIN~sRg  287 (370)
                      +++.  |..+. ++. ++  |.       +.+....|.+++++++..
T Consensus        74 vitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNP  120 (142)
T d1guza1          74 IITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNP  120 (142)
T ss_dssp             EECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSS
T ss_pred             EEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecCC
Confidence            9985  33332 111 11  11       234445689999998664

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.39  E-value=0.00094  Score=56.14  Aligned_cols=111  Identities=14%  Similarity=0.170  Sum_probs=63.9

Q ss_pred             ceEEEEecCchhHHHHHHhccC-CCEEEE-EcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHh--cCCE
Q 017490          178 KTVFILGFGNIGVELAKRLRPF-GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFAS--KADV  252 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~-G~~V~~-~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~--~aDi  252 (370)
                      .++||||+|.+|+..++.++.. +++|.+ +|++..+...       +....     ...... .+.+++++++  +.|+
T Consensus         2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~-------~~~~~-----~~~~~~~~~~~~~~ll~~~~iD~   69 (184)
T d1ydwa1           2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKA-------FATAN-----NYPESTKIHGSYESLLEDPEIDA   69 (184)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHH-------HHHHT-----TCCTTCEEESSHHHHHHCTTCCE
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCcccccc-------chhcc-----ccccceeecCcHHHhhhccccce
Confidence            3799999999999999988765 778774 5775433110       00000     000001 2468999985  5799


Q ss_pred             EEEeccCChhhhcccCHHHHhcCCCCcEEEEcC--CCcccCHHHHHHHHHhCCce
Q 017490          253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA--RGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~s--Rg~~vd~~aL~~aL~~g~i~  305 (370)
                      |+++.|.......     ....++.|.-++---  --.+-+.+.|.+..++..+.
T Consensus        70 v~I~tp~~~h~~~-----~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~  119 (184)
T d1ydwa1          70 LYVPLPTSLHVEW-----AIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQ  119 (184)
T ss_dssp             EEECCCGGGHHHH-----HHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCC
T ss_pred             eeecccchhhcch-----hhhhhhccceeecccccccCHHHHHHHHHHHHhhCCE
Confidence            9999885433221     223344554443221  11223445678888877665

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.39  E-value=0.0033  Score=50.33  Aligned_cols=98  Identities=18%  Similarity=0.131  Sum_probs=63.2

Q ss_pred             cccCceEEEEec----------CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccc--ccCCCC
Q 017490          174 TLLGKTVFILGF----------GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD--EKGCHE  241 (370)
Q Consensus       174 ~l~g~tvGIiGl----------G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  241 (370)
                      .+.+++|||+|+          +.-...+++.|...|++|.+|||........ .....+.      .....  ......
T Consensus        10 ~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~-~~~~~~~------~~~~~~~~~~~~~   82 (136)
T d1mv8a3          10 SHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVH-GANKEYI------ESKIPHVSSLLVS   82 (136)
T ss_dssp             TSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTS-SSCHHHH------HHTSHHHHTTBCS
T ss_pred             hcCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHh-hhhhhhh------hhccccccceeeh
Confidence            467899999998          3567789999999999999999853221000 0000000      00000  001246


Q ss_pred             CHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEc
Q 017490          242 DIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNI  284 (370)
Q Consensus       242 ~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~  284 (370)
                      ++++++..+|+|+++++-. +-     .+....++++.+++|+
T Consensus        83 ~~~e~i~~~D~ivi~t~h~-~f-----~~l~~~~~~~~~I~D~  119 (136)
T d1mv8a3          83 DLDEVVASSDVLVLGNGDE-LF-----VDLVNKTPSGKKLVDL  119 (136)
T ss_dssp             CHHHHHHHCSEEEECSCCG-GG-----HHHHHSCCTTCEEEES
T ss_pred             hhhhhhhhceEEEEEeCCH-HH-----HHHHHHhcCCCEEEEC
Confidence            8999999999999998743 22     2345567788899997

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=96.37  E-value=0.0012  Score=54.06  Aligned_cols=103  Identities=20%  Similarity=0.194  Sum_probs=58.9

Q ss_pred             ceEEEEecCchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVV  254 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~  254 (370)
                      |+|+|||.|.+|..+|..+...|+  ++..||........ ...  ++....    ....... ......+.++.||+|+
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g-~~~--Dl~~a~----~~~~~~~~~~~~d~~~l~~adiVV   74 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKA-DQI--DFQDAM----ANLEAHGNIVINDWAALADADVVI   74 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHH-HHH--HHHHHG----GGSSSCCEEEESCGGGGTTCSEEE
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhh-HHH--hhhccc----cccCCccceeccCHHHhccccEEE
Confidence            789999999999999998876564  89999987543111 000  110000    0000000 0112235579999999


Q ss_pred             EeccCCh-------hhhc-cc--CH-------HHHhcCCCCcEEEEcCCC
Q 017490          255 CCLSLNK-------QTAG-IV--NK-------SFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       255 l~lP~t~-------~t~~-li--~~-------~~l~~mk~gailIN~sRg  287 (370)
                      ++.....       .+|. ++  |.       +.++...|.+++|+++..
T Consensus        75 itaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNP  124 (146)
T d1hyha1          75 STLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNP  124 (146)
T ss_dssp             ECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSS
T ss_pred             EeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCc
Confidence            9865321       1221 22  11       234556789999999654

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.36  E-value=0.0018  Score=54.63  Aligned_cols=82  Identities=15%  Similarity=0.235  Sum_probs=45.3

Q ss_pred             eEEEEecCchhHHHHHHhccC-CCEEEEEcCCCccccccccccchhhhc-cccccccccccC--CCCCHHHHHhcCCEEE
Q 017490          179 TVFILGFGNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVK-NGIIDDLVDEKG--CHEDIFEFASKADVVV  254 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~-G~~V~~~dr~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~l~ell~~aDiV~  254 (370)
                      +|||.|+|+||+.++|.+... +++|++++................+.. ...-...+.+.+  ...++.+++.++|+|+
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiVi   82 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV   82 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEEE
Confidence            799999999999999998754 578887654321110000000000000 000000111111  2346788888999999


Q ss_pred             EeccCC
Q 017490          255 CCLSLN  260 (370)
Q Consensus       255 l~lP~t  260 (370)
                      -|.|..
T Consensus        83 ecTG~f   88 (178)
T d1b7go1          83 DTTPNG   88 (178)
T ss_dssp             ECCSTT
T ss_pred             ECCCCc
Confidence            998853

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.27  E-value=0.0013  Score=53.80  Aligned_cols=104  Identities=14%  Similarity=0.108  Sum_probs=58.4

Q ss_pred             cCceEEEEecCchhHHHHHHhccCC--CEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEE
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  253 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G--~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  253 (370)
                      ..++|+|||.|.+|..+|..|...|  -+|..||+....... ..  .++.....  ... .......+. +.++.||+|
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g-~a--~Dl~~a~~--~~~-~~~~~~~d~-~~~~~adiv   76 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKG-DA--LDLEDAQA--FTA-PKKIYSGEY-SDCKDADLV   76 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHH-HH--HHHHGGGG--GSC-CCEEEECCG-GGGTTCSEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHH-HH--HHHhcccc--ccC-CceEeeccH-HHhccccEE
Confidence            4679999999999999999988666  489999987543110 00  01100000  000 000011244 346899999


Q ss_pred             EEeccCC--h-hhh-ccc--CH-------HHHhcCCCCcEEEEcCC
Q 017490          254 VCCLSLN--K-QTA-GIV--NK-------SFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       254 ~l~lP~t--~-~t~-~li--~~-------~~l~~mk~gailIN~sR  286 (370)
                      +++....  + +++ .++  |.       +.+..-.|.+++|+++.
T Consensus        77 vitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtN  122 (146)
T d1ez4a1          77 VITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN  122 (146)
T ss_dssp             EECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             EEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCC
Confidence            9985421  1 111 111  11       23555678999999975

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=96.13  E-value=0.0058  Score=49.03  Aligned_cols=104  Identities=12%  Similarity=0.211  Sum_probs=69.4

Q ss_pred             cCceEEEEec----CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCC
Q 017490          176 LGKTVFILGF----GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  251 (370)
Q Consensus       176 ~g~tvGIiGl----G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  251 (370)
                      +-|+|+|||.    +..|..+.+.|+..|+++..+.+++...                  + ......+.++.++-..-|
T Consensus        12 ~pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~------------------~-i~g~~~~~~l~~i~~~iD   72 (136)
T d1iuka_          12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGE------------------E-LFGEEAVASLLDLKEPVD   72 (136)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTS------------------E-ETTEECBSSGGGCCSCCS
T ss_pred             CCCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccc------------------e-eeceecccchhhccCCCc
Confidence            4578999997    7899999999999999999998754321                  0 111114567777777889


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      ++++++| .+.+..++.+. . .+...++++..+   ..+++ +.+..++..+.
T Consensus        73 ~v~v~~p-~~~v~~~v~~~-~-~~g~k~i~~q~G---~~~~e-~~~~a~~~Gi~  119 (136)
T d1iuka_          73 ILDVFRP-PSALMDHLPEV-L-ALRPGLVWLQSG---IRHPE-FEKALKEAGIP  119 (136)
T ss_dssp             EEEECSC-HHHHTTTHHHH-H-HHCCSCEEECTT---CCCHH-HHHHHHHTTCC
T ss_pred             eEEEecc-HHHHHHHHHHH-H-hhCCCeEEEecC---ccCHH-HHHHHHHcCCE
Confidence            9999998 44555565432 2 334567787654   34554 45555554443

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.05  E-value=0.0021  Score=52.61  Aligned_cols=37  Identities=22%  Similarity=0.365  Sum_probs=33.6

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      .|.+|.|.|.|.||...++.++..|.+|++++++..+
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r   63 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEK   63 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHH
Confidence            5789999999999999999999999999999987554

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=96.04  E-value=0.0015  Score=54.78  Aligned_cols=106  Identities=16%  Similarity=0.179  Sum_probs=59.3

Q ss_pred             ceEEEEecCchhHH-HHHHhccCC--CEEE-EEcCCCccccccccccchhhhccccccccccccC---CCCCHHHHHh--
Q 017490          178 KTVFILGFGNIGVE-LAKRLRPFG--VKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFAS--  248 (370)
Q Consensus       178 ~tvGIiGlG~IG~~-vA~~l~~~G--~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~--  248 (370)
                      .++||||+|.+|+. .+..++.++  ++|. ++|++.....                 ......+   .+.+++++++  
T Consensus         4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~-----------------~~~~~~~~~~~~~~~~ell~~~   66 (181)
T d1zh8a1           4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAE-----------------EFAKMVGNPAVFDSYEELLESG   66 (181)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHH-----------------HHHHHHSSCEEESCHHHHHHSS
T ss_pred             cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhh-----------------hhhccccccceeeeeecccccc
Confidence            47999999999987 477776643  4665 5677654311                 1111111   2478999986  


Q ss_pred             cCCEEEEeccCChhhhcccCHHHHhcCCCC-cEEEEcC-CCcccCHHHHHHHHHhCCce
Q 017490          249 KADVVVCCLSLNKQTAGIVNKSFLSSMKKG-SLLVNIA-RGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       249 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~g-ailIN~s-Rg~~vd~~aL~~aL~~g~i~  305 (370)
                      +.|+|++++|...... + -...+   +.| .+++.-= --.+-+..+|.+..++....
T Consensus        67 ~id~v~I~tp~~~h~~-~-~~~al---~~gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~  120 (181)
T d1zh8a1          67 LVDAVDLTLPVELNLP-F-IEKAL---RKGVHVICEKPISTDVETGKKVVELSEKSEKT  120 (181)
T ss_dssp             CCSEEEECCCGGGHHH-H-HHHHH---HTTCEEEEESSSSSSHHHHHHHHHHHHHCSSC
T ss_pred             ccceeecccccccccc-c-ccccc---ccchhhhcCCCCcCCHHHHHHHHHHHHHhCCe
Confidence            5789999988542211 1 12233   233 2333321 12233445577776665443

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=96.03  E-value=0.0029  Score=52.22  Aligned_cols=90  Identities=23%  Similarity=0.280  Sum_probs=54.4

Q ss_pred             ceEEEEecCchhHH-HHHHhccCC-CEEEE-EcCCCccccccccccchhhhccccccccccccC---CCCCHHHHH----
Q 017490          178 KTVFILGFGNIGVE-LAKRLRPFG-VKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFA----  247 (370)
Q Consensus       178 ~tvGIiGlG~IG~~-vA~~l~~~G-~~V~~-~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell----  247 (370)
                      .++||||.|.||+. +.+.++.+. .++.+ .+++......                ...++.+   ...++++++    
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~----------------~~a~~~~i~~~~~~~d~l~~~~~   68 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGL----------------ARAQRMGVTTTYAGVEGLIKLPE   68 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHH----------------HHHHHTTCCEESSHHHHHHHSGG
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccch----------------hhhhhcCCcccccceeeeeeccc
Confidence            47999999999986 567777553 45544 5665432100                0111111   123344443    


Q ss_pred             -hcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          248 -SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       248 -~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                       .+.|+|+.++|......+   +..++..+.|.++|+-+.
T Consensus        69 ~~~iDiVf~ATpag~h~~~---~~~~~aa~~G~~VID~s~  105 (157)
T d1nvmb1          69 FADIDFVFDATSASAHVQN---EALLRQAKPGIRLIDLTP  105 (157)
T ss_dssp             GGGEEEEEECSCHHHHHHH---HHHHHHHCTTCEEEECST
T ss_pred             ccccCEEEEcCCchhHHHh---HHHHHHHHcCCEEEEccc
Confidence             467999999885433322   234556789999999885

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.02  E-value=0.0016  Score=52.70  Aligned_cols=103  Identities=15%  Similarity=0.181  Sum_probs=58.2

Q ss_pred             ceEEEEecCchhHHHHHHhcc--CCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEE
Q 017490          178 KTVFILGFGNIGVELAKRLRP--FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  255 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~--~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  255 (370)
                      .+|+|||.|.+|..+|..+..  +.-++..+|....... ....  ++....    ..........+..+.++.||+|++
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~-g~~~--Dl~~~~----~~~~~~~~~~~~~~~~~~adivvi   73 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAE-GDAL--DLIHGT----PFTRRANIYAGDYADLKGSDVVIV   73 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHH-HHHH--HHHHHG----GGSCCCEEEECCGGGGTTCSEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccccccc-chhc--cccccc----cccccccccCCcHHHhcCCCEEEE
Confidence            479999999999999987764  4458999998754321 1110  110000    000000011223456899999999


Q ss_pred             eccC--Ch-hhh-ccc--CH-------HHHhcCCCCcEEEEcCCC
Q 017490          256 CLSL--NK-QTA-GIV--NK-------SFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       256 ~lP~--t~-~t~-~li--~~-------~~l~~mk~gailIN~sRg  287 (370)
                      +.-.  .+ +++ .++  |.       +.+....|++++++++..
T Consensus        74 tag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtNP  118 (140)
T d1a5za1          74 AAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNP  118 (140)
T ss_dssp             CCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred             ecccccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCCc
Confidence            8532  21 111 111  11       235556789999998754

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.00  E-value=0.0013  Score=54.81  Aligned_cols=95  Identities=11%  Similarity=0.088  Sum_probs=56.0

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCCE-EEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHh-----
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----  248 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~-V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----  248 (370)
                      -.|.+|.|+|.|.||...++.++.+|++ |++.|+++.+.......        + ..+.+..  ...++.+.+.     
T Consensus        27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~--------G-a~~~i~~--~~~~~~~~i~~~t~g   95 (174)
T d1f8fa2          27 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL--------G-ATHVINS--KTQDPVAAIKEITDG   95 (174)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH--------T-CSEEEET--TTSCHHHHHHHHTTS
T ss_pred             CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc--------C-CeEEEeC--CCcCHHHHHHHHcCC
Confidence            3588999999999999999999999995 55667665431110000        0 0001100  1123333322     


Q ss_pred             cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcC
Q 017490          249 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       249 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~s  285 (370)
                      ..|+|+-|+... ++.    ...++.++++..++.++
T Consensus        96 g~D~vid~~G~~-~~~----~~~~~~~~~~G~i~~~G  127 (174)
T d1f8fa2          96 GVNFALESTGSP-EIL----KQGVDALGILGKIAVVG  127 (174)
T ss_dssp             CEEEEEECSCCH-HHH----HHHHHTEEEEEEEEECC
T ss_pred             CCcEEEEcCCcH-HHH----HHHHhcccCceEEEEEe
Confidence            258888776632 221    34566778888887775

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=95.79  E-value=0.017  Score=46.99  Aligned_cols=100  Identities=20%  Similarity=0.185  Sum_probs=61.2

Q ss_pred             ccCceEEEEec---CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCC
Q 017490          175 LLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  251 (370)
Q Consensus       175 l~g~tvGIiGl---G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  251 (370)
                      |.|++|++||=   |++.++++..+..+|+++..+-+...- ..+..    +      ............++++.++.+|
T Consensus         1 l~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~-~~~~~----~------~~~~~~~~~~~~d~~eai~~aD   69 (153)
T d1pg5a2           1 IDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLL-RARKE----I------LDELNYPVKEVENPFEVINEVD   69 (153)
T ss_dssp             STTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGG-CCCHH----H------HTTCCSCEEEESCGGGTGGGCS
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHHHcCCeeEEEeccccc-ccchh----h------cccCCCeEEEEeCHHHHhhcCC
Confidence            57999999995   458999999999999987654332111 00000    0      0000001112358899999999


Q ss_pred             EEEEeccCCh-----------hhhcccCHHHHhcCCCCcEEEEcC
Q 017490          252 VVVCCLSLNK-----------QTAGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       252 iV~l~lP~t~-----------~t~~li~~~~l~~mk~gailIN~s  285 (370)
                      +|...--...           .....++.+.++.+|++++|.-+.
T Consensus        70 vvy~~~~q~~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~i~mH~L  114 (153)
T d1pg5a2          70 VLYVTRIQKERFVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPL  114 (153)
T ss_dssp             EEEEECCCSTTSSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCS
T ss_pred             eEEEeeeeehhccchhHHHHHHHhhhhhHHHHhccCCCeEEecCC
Confidence            9875421100           122346778888888888887663

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.73  E-value=0.004  Score=51.00  Aligned_cols=104  Identities=11%  Similarity=0.161  Sum_probs=59.9

Q ss_pred             CceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCCEE
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVV  253 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV  253 (370)
                      ..+|+|||.|.+|..+|..+...+. ++..||+........ ..  ++...    ........  ...+..+.++.||+|
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~-a~--Dl~~~----~~~~~~~~~v~~~~~~~~~~~advv   75 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGK-AL--DTSHT----NVMAYSNCKVSGSNTYDDLAGADVV   75 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHH-HH--HHHTH----HHHHTCCCCEEEECCGGGGTTCSEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceee-ec--chhhh----ccccCCCcEEEecccccccCCCcEE
Confidence            4689999999999999988765554 899999876432110 00  00000    00000000  112345677899999


Q ss_pred             EEeccCChh---h-----h-ccc--CHH-------HHhcCCCCcEEEEcCCC
Q 017490          254 VCCLSLNKQ---T-----A-GIV--NKS-------FLSSMKKGSLLVNIARG  287 (370)
Q Consensus       254 ~l~lP~t~~---t-----~-~li--~~~-------~l~~mk~gailIN~sRg  287 (370)
                      +++.-....   +     | .++  |.+       .++...|++++++++..
T Consensus        76 vitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNP  127 (150)
T d1t2da1          76 IVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNP  127 (150)
T ss_dssp             EECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSS
T ss_pred             EEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc
Confidence            998653211   1     1 122  222       24445689999999765

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.66  E-value=0.0021  Score=53.47  Aligned_cols=37  Identities=19%  Similarity=0.402  Sum_probs=32.9

Q ss_pred             cCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          176 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       176 ~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      .|++|.|.|. |.+|+...+.++.+|++|++.+++.++
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~   64 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEK   64 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGG
T ss_pred             CCCEEEEEeccccchhhhhhhhcccccccccccccccc
Confidence            5889999995 999999999999999999999876543

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.64  E-value=0.031  Score=45.85  Aligned_cols=107  Identities=16%  Similarity=0.138  Sum_probs=65.2

Q ss_pred             cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCE
Q 017490          174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  252 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  252 (370)
                      .|.|++|++||= .++.++++..+..||+++....+..-........   +.....  ...........++++.++.+|+
T Consensus         1 sl~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~d~~ea~~~adv   75 (163)
T d1pvva2           1 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIK---WAEQNA--AESGGSFELLHDPVKAVKDADV   75 (163)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHH---HHHHHH--HHHTCEEEEESCHHHHTTTCSE
T ss_pred             CcCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHH---HHHHhh--hcccceEEEecCHHHHhhhccE
Confidence            378999999995 4577888899999999999887642211000000   000000  0000000123588999999999


Q ss_pred             EEEeccCC------hh------hhcccCHHHHhcCCCCcEEEEcC
Q 017490          253 VVCCLSLN------KQ------TAGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       253 V~l~lP~t------~~------t~~li~~~~l~~mk~gailIN~s  285 (370)
                      |..-.=..      .+      ....++.+.++.+|++++|.-+.
T Consensus        76 iy~~~~~~~~~~~~~~~~~~~~~~y~v~~~~l~~ak~~~iimHpl  120 (163)
T d1pvva2          76 IYTDVWASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCL  120 (163)
T ss_dssp             EEECCCCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECS
T ss_pred             EeecceeecccchhhHHHHHHhhhhhHHHHHHHhhCCCeEEecCC
Confidence            98643111      11      12466888999999999988664

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=95.62  E-value=0.0032  Score=54.65  Aligned_cols=75  Identities=16%  Similarity=0.121  Sum_probs=45.3

Q ss_pred             cCceEEEEecCchhHH-HHHHhccC-CCEEE-EEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHh--cC
Q 017490          176 LGKTVFILGFGNIGVE-LAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KA  250 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~-vA~~l~~~-G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~a  250 (370)
                      +--+|||||+|.+|+. ++..++.. +++|. ++|+++........   .|    +.  . ......+.++++++.  +.
T Consensus        32 ~~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~---~~----~i--~-~~~~~~~~d~~ell~~~~i  101 (221)
T d1h6da1          32 RRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAA---EY----GV--D-PRKIYDYSNFDKIAKDPKI  101 (221)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHH---HT----TC--C-GGGEECSSSGGGGGGCTTC
T ss_pred             CCEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHH---hh----cc--c-cccccccCchhhhcccccc
Confidence            3458999999999974 56666654 77876 67876544211000   00    00  0 000013468888886  57


Q ss_pred             CEEEEeccCC
Q 017490          251 DVVVCCLSLN  260 (370)
Q Consensus       251 DiV~l~lP~t  260 (370)
                      |+|++++|..
T Consensus       102 D~V~I~tp~~  111 (221)
T d1h6da1         102 DAVYIILPNS  111 (221)
T ss_dssp             CEEEECSCGG
T ss_pred             eeeeeccchh
Confidence            8999998843

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=95.62  E-value=0.0034  Score=52.55  Aligned_cols=31  Identities=29%  Similarity=0.559  Sum_probs=25.2

Q ss_pred             ceEEEEecCchhHHHHHHhccC-CCEEEEEcC
Q 017490          178 KTVFILGFGNIGVELAKRLRPF-GVKIIATKR  208 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~-G~~V~~~dr  208 (370)
                      ++|||-|+|+||+.++|.+... .++|.+++.
T Consensus         2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaInd   33 (171)
T d1cf2o1           2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSK   33 (171)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSSSEEEEEEEE
T ss_pred             eEEEEEcCcHHHHHHHHHHHhCCCceEEEEec
Confidence            5899999999999999988654 467776653

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.59  E-value=0.014  Score=48.44  Aligned_cols=38  Identities=24%  Similarity=0.343  Sum_probs=33.6

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCcc
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  212 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~  212 (370)
                      -.|.+|.|+|.|.||...++.++.+|+ +|++.|++..+
T Consensus        27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r   65 (174)
T d1e3ia2          27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEK   65 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHH
Confidence            357899999999999999999999999 68888987655

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=95.53  E-value=0.0029  Score=52.44  Aligned_cols=93  Identities=14%  Similarity=0.078  Sum_probs=57.2

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHh----
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS----  248 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~----  248 (370)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.|++..+......             -..+...  ..++.++..+    
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~-------------~ga~~~i~~~~~~~~~~~~~~~~   98 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER-------------LGADHVVDARRDPVKQVMELTRG   98 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH-------------TTCSEEEETTSCHHHHHHHHTTT
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhh-------------cccceeecCcccHHHHHHHhhCC
Confidence            47899999999999999999998886 67888876543111000             0011111  1122333333    


Q ss_pred             -cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          249 -KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       249 -~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                       ..|+|+.++.....    + ...+..++++..++.++-
T Consensus        99 ~g~d~vid~~g~~~~----~-~~a~~~l~~~G~iv~~G~  132 (172)
T d1h2ba2          99 RGVNVAMDFVGSQAT----V-DYTPYLLGRMGRLIIVGY  132 (172)
T ss_dssp             CCEEEEEESSCCHHH----H-HHGGGGEEEEEEEEECCC
T ss_pred             CCceEEEEecCcchH----H-HHHHHHHhCCCEEEEEeC
Confidence             26888887764322    1 245667888888887753

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.52  E-value=0.018  Score=46.19  Aligned_cols=102  Identities=13%  Similarity=0.102  Sum_probs=68.5

Q ss_pred             cCceEEEEec----CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCC
Q 017490          176 LGKTVFILGF----GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  251 (370)
Q Consensus       176 ~g~tvGIiGl----G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  251 (370)
                      +-|+|+|||.    |..|..+++.|+.+|++|+.+++....-                  ....   .+.++.++-..-|
T Consensus        18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i------------------~G~~---~~~sl~dlp~~iD   76 (139)
T d2d59a1          18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEV------------------LGRK---CYPSVLDIPDKIE   76 (139)
T ss_dssp             HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE------------------TTEE---CBSSGGGCSSCCS
T ss_pred             cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccccc------------------CCCc---ccccccccCccce
Confidence            4578999996    5799999999999999999998764320                  1111   4567888888899


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  305 (370)
                      ++++++|. +.+..++.+- . .+....+++..+   ..++ ++.+.+++..+.
T Consensus        77 ~v~i~vp~-~~~~~~~~e~-~-~~g~k~v~~~~G---~~~e-e~~~~a~~~gi~  123 (139)
T d2d59a1          77 VVDLFVKP-KLTMEYVEQA-I-KKGAKVVWFQYN---TYNR-EASKKADEAGLI  123 (139)
T ss_dssp             EEEECSCH-HHHHHHHHHH-H-HHTCSEEEECTT---CCCH-HHHHHHHHTTCE
T ss_pred             EEEEEeCH-HHHHHHHHHH-H-HhCCCEEEEecc---ccCH-HHHHHHHHCCCE
Confidence            99999994 3444444332 2 234557777655   2344 445555555554

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.47  E-value=0.011  Score=49.21  Aligned_cols=38  Identities=21%  Similarity=0.422  Sum_probs=34.3

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCcc
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  212 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~  212 (370)
                      -.|.+|.|+|.|.+|...++.++.+|+ +|++.|++.++
T Consensus        28 ~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~k   66 (176)
T d1d1ta2          28 KPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDK   66 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHH
Confidence            468899999999999999999999996 89999988665

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.39  E-value=0.0088  Score=48.44  Aligned_cols=104  Identities=16%  Similarity=0.134  Sum_probs=61.6

Q ss_pred             ceEEEEec-CchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhccccccccccc--cCCCCCHHHHHhcCCE
Q 017490          178 KTVFILGF-GNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE--KGCHEDIFEFASKADV  252 (370)
Q Consensus       178 ~tvGIiGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~ell~~aDi  252 (370)
                      .+|+|||. |.+|+.+|..+...|.  ++..+|....+. ...+    +...    ......  .....+..+.++.||+
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~-~a~D----l~~~----~~~~~~~~~~~~~~~~~~~~~aDi   71 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPG-VAAD----LSHI----ETRATVKGYLGPEQLPDCLKGCDV   71 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHH-HHHH----HTTS----SSSCEEEEEESGGGHHHHHTTCSE
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccch-hhHH----Hhhh----hhhcCCCeEEcCCChHHHhCCCCE
Confidence            47999995 9999999999987776  689999754321 1111    1000    000000  0123466788999999


Q ss_pred             EEEecc--CCh-hhhc-cc--CHH-------HHhcCCCCcEEEEcCCCcccCH
Q 017490          253 VVCCLS--LNK-QTAG-IV--NKS-------FLSSMKKGSLLVNIARGGLLDY  292 (370)
Q Consensus       253 V~l~lP--~t~-~t~~-li--~~~-------~l~~mk~gailIN~sRg~~vd~  292 (370)
                      |+++..  ..+ ++|. ++  |.+       .+....|.++++.++..  +|.
T Consensus        72 vVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtNP--vD~  122 (144)
T d1mlda1          72 VVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNP--VNS  122 (144)
T ss_dssp             EEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSC--HHH
T ss_pred             EEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc--hhh
Confidence            999754  222 2221 22  111       23445788999999654  553

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=95.35  E-value=0.0068  Score=48.99  Aligned_cols=103  Identities=12%  Similarity=0.106  Sum_probs=55.7

Q ss_pred             ceEEEEecCchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  255 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  255 (370)
                      ++|+|||.|.+|..+|..+...|.  ++..||+........ .  .++....    .............+.++.||+|++
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~-a--~Dl~~~~----~~~~~~~~~~~~~~~~~~adivvi   74 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGE-A--MDINHGL----PFMGQMSLYAGDYSDVKDCDVIVV   74 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHH-H--HHHTTSC----CCTTCEEEC--CGGGGTTCSEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCcccee-e--eeeccCc----ccCCCeeEeeCcHHHhCCCceEEE
Confidence            479999999999999998876555  899999876542111 0  0111000    000000011223456789999999


Q ss_pred             eccCC--h-hhh-ccc--CH-------HHHhcCCCCcEEEEcCCC
Q 017490          256 CLSLN--K-QTA-GIV--NK-------SFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       256 ~lP~t--~-~t~-~li--~~-------~~l~~mk~gailIN~sRg  287 (370)
                      +.-..  + +++ .++  |.       +.+....|.+++|+++..
T Consensus        75 tag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtNP  119 (142)
T d1y6ja1          75 TAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNP  119 (142)
T ss_dssp             CCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSS
T ss_pred             ecccccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecCh
Confidence            84322  1 111 111  11       124455788999999664

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.33  E-value=0.0084  Score=52.71  Aligned_cols=40  Identities=23%  Similarity=0.302  Sum_probs=35.6

Q ss_pred             ccccCceEEEEecCc-hhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          173 ETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~-IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      +.|+||++.|.|.+. ||+++|+.+...|++|+..+|+.++
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~   43 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHG   43 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            469999999999855 9999999999999999999997543

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.31  E-value=0.0064  Score=48.36  Aligned_cols=108  Identities=11%  Similarity=0.149  Sum_probs=68.2

Q ss_pred             ccCceEEEEec----CchhHHHHHHhccCC-CEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhc
Q 017490          175 LLGKTVFILGF----GNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK  249 (370)
Q Consensus       175 l~g~tvGIiGl----G~IG~~vA~~l~~~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  249 (370)
                      ++-++|+|||.    |..|..+.+.|+..| .+|+.+++..+..                  ....   .+.++.++-..
T Consensus         6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i------------------~G~~---~y~sl~dlp~~   64 (129)
T d2csua1           6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV------------------QGVK---AYKSVKDIPDE   64 (129)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE------------------TTEE---CBSSTTSCSSC
T ss_pred             CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCcccc------------------CCeE---eecchhhcCCC
Confidence            45689999996    899999999998765 6999998764320                  1111   45677777778


Q ss_pred             CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcc-----cCHHHHHHHHHhCCce
Q 017490          250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL-----LDYEAIAHYLECGHLG  305 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~-----vd~~aL~~aL~~g~i~  305 (370)
                      .|++++++| .+.+..++. +..+.=-++++++-.+-++.     ..+++|.+..++..++
T Consensus        65 vDlvvi~vp-~~~~~~~~~-~~~~~g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~gir  123 (129)
T d2csua1          65 IDLAIIVVP-KRFVKDTLI-QCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMR  123 (129)
T ss_dssp             CSEEEECSC-HHHHHHHHH-HHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCE
T ss_pred             CceEEEecC-hHHhHHHHH-HHHHcCCCEEEEecccccccchhhHHHHHHHHHHHHHcCCE
Confidence            999999999 445555653 22222223344443333332     2234566666665554

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.26  E-value=0.0088  Score=48.31  Aligned_cols=102  Identities=13%  Similarity=0.061  Sum_probs=58.9

Q ss_pred             ceEEEEecCchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhccccccccccccC---CCCCHHHHHhcCCE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFASKADV  252 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~~aDi  252 (370)
                      .+|+|||.|.+|..+|..+...|.  ++..+|...+.... ..  .++...    ........   ...+ .+.++.||+
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g-~a--lDl~~~----~~~~~~~~~i~~~~d-~~~~~~adi   72 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVG-EA--MDLAHA----AAGIDKYPKIVGGAD-YSLLKGSEI   72 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHH-HH--HHHHHH----HHTTTCCCEEEEESC-GGGGTTCSE
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhH-HH--HHHhhh----ccccCCCCccccCCC-HHHhccccE
Confidence            479999999999999998876554  79999986543110 00  011000    00000000   1123 367899999


Q ss_pred             EEEecc--CChh-hh-ccc--CH-------HHHhcCCCCcEEEEcCCC
Q 017490          253 VVCCLS--LNKQ-TA-GIV--NK-------SFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       253 V~l~lP--~t~~-t~-~li--~~-------~~l~~mk~gailIN~sRg  287 (370)
                      |++...  ..+. ++ .++  |.       +.+....|.+++++++..
T Consensus        73 Vvitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtNP  120 (142)
T d1ojua1          73 IVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNP  120 (142)
T ss_dssp             EEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSS
T ss_pred             EEEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecCC
Confidence            999864  2221 11 111  11       235556788999999774

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.24  E-value=0.0075  Score=47.20  Aligned_cols=34  Identities=26%  Similarity=0.367  Sum_probs=31.4

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      +++.|||.|.||-++|..+..+|++|..+++...
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~   57 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQ   57 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEEEeccc
Confidence            6899999999999999999999999999988654

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.23  E-value=0.0083  Score=46.65  Aligned_cols=35  Identities=29%  Similarity=0.398  Sum_probs=31.9

Q ss_pred             CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      -++|.|||.|.||-++|..|+.+|.+|..+++...
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   56 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNR   56 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhcc
Confidence            37899999999999999999999999999998643

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.23  E-value=0.0072  Score=51.91  Aligned_cols=34  Identities=24%  Similarity=0.374  Sum_probs=32.0

Q ss_pred             CceEEEEecCchhHHHHHHhccCCCEEEEEcCCC
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      ||+|.|||.|.-|...|..|+..|++|.+++++.
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            6899999999999999999999999999999764

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.23  E-value=0.0028  Score=52.60  Aligned_cols=36  Identities=28%  Similarity=0.575  Sum_probs=32.3

Q ss_pred             cCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          176 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       176 ~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      .|.+|.|+|. |.+|....+.++.+|++|++.+++.+
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~   64 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEE   64 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCEEEEEeccccccccccccccccCccccccccccc
Confidence            5889999995 99999999999999999999987643

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=95.19  E-value=0.018  Score=50.87  Aligned_cols=38  Identities=24%  Similarity=0.421  Sum_probs=34.4

Q ss_pred             cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      .|+||++.|.|. +.||+++|+.|...|++|+..+|+..
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~   41 (258)
T d1ae1a_           3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEK   41 (258)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            589999999995 77999999999999999999998753

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.15  E-value=0.0076  Score=50.37  Aligned_cols=30  Identities=23%  Similarity=0.362  Sum_probs=24.6

Q ss_pred             ceEEEEecCchhHHHHHHhcc-CCCEEEEEc
Q 017490          178 KTVFILGFGNIGVELAKRLRP-FGVKIIATK  207 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~-~G~~V~~~d  207 (370)
                      .+|||.|+|+||+.+++.+.. -.++|.+++
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaIN   33 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGIT   33 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEe
Confidence            479999999999999998864 457777665

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.14  E-value=0.0078  Score=46.48  Aligned_cols=34  Identities=29%  Similarity=0.524  Sum_probs=31.4

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      +++.|||.|.||-++|..+..+|.+|..+.+...
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGE   56 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CeEEEECCCccceeeeeeecccccEEEEEEecce
Confidence            6899999999999999999999999999987654

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=95.09  E-value=0.0059  Score=46.04  Aligned_cols=36  Identities=19%  Similarity=0.262  Sum_probs=31.8

Q ss_pred             cCceEEEEecCchh-HHHHHHhccCCCEEEEEcCCCc
Q 017490          176 LGKTVFILGFGNIG-VELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       176 ~g~tvGIiGlG~IG-~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      +.+++=+||.|.+| .++|+.|+..|++|.++|....
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~   43 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADG   43 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCS
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            46789999999999 6679999999999999998643

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.08  E-value=0.0063  Score=50.35  Aligned_cols=36  Identities=19%  Similarity=0.247  Sum_probs=32.6

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCE-EEEEcCCCc
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWA  211 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~-V~~~dr~~~  211 (370)
                      .+|+|.|||.|.+|-..|..|+.+|++ |.++++...
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            589999999999999999999999995 999998654

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=95.08  E-value=0.013  Score=49.26  Aligned_cols=40  Identities=15%  Similarity=0.169  Sum_probs=35.9

Q ss_pred             cccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      .....+|+|.|||.|..|-+.|..|+..|++|..|++...
T Consensus        38 ~~~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~   77 (179)
T d1ps9a3          38 LPAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE   77 (179)
T ss_dssp             CSCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCCCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCc
Confidence            3456789999999999999999999999999999998654

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=94.81  E-value=0.012  Score=45.49  Aligned_cols=34  Identities=32%  Similarity=0.360  Sum_probs=31.3

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      +++.|||.|.+|-++|..++.+|.+|..+++...
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~   55 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDA   55 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecch
Confidence            5799999999999999999999999999998654

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.80  E-value=0.0071  Score=52.79  Aligned_cols=40  Identities=20%  Similarity=0.255  Sum_probs=35.5

Q ss_pred             ccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          173 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       173 ~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      +.|+||++.|.|. +.||+++|++|...|++|++.+|+.+.
T Consensus         1 ~slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~   41 (248)
T d2o23a1           1 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSG   41 (248)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHH
Confidence            4689999999997 569999999999999999999987544

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=94.80  E-value=0.26  Score=42.34  Aligned_cols=160  Identities=16%  Similarity=0.161  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCcccccc-c
Q 017490          140 CAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQV-S  217 (370)
Q Consensus       140 vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~-~  217 (370)
                      +|--+++-+|+.+|-.                ++.|++.++.|+|.|.-|..+|+.+...|. +++.+|+..--...- .
T Consensus         5 TaaV~LAgll~a~~~~----------------g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~r~~   68 (222)
T d1vl6a1           5 TAVVVSAAFLNALKLT----------------EKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPE   68 (222)
T ss_dssp             HHHHHHHHHHHHHHHH----------------TCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGG
T ss_pred             HHHHHHHHHHHHHHHh----------------CCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcCccc
Confidence            5556778888888753                467999999999999999999999987777 699999863210000 0


Q ss_pred             cccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 017490          218 CQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAH  297 (370)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~  297 (370)
                      ....++....   ...........++.+.+..++++...-     +.+++.++.++.|.+..++.=.|+.-.--|.+  .
T Consensus        69 ~~~~~~~~~~---~~~~~~~~~~~~l~~~l~g~~~~~g~~-----~~~~~~~e~m~~~~~rPIIFpLSNPt~~~e~~--~  138 (222)
T d1vl6a1          69 TCLNEYHLEI---ARITNPERLSGDLETALEGADFFIGVS-----RGNILKPEWIKKMSRKPVIFALANPVPEIDPE--L  138 (222)
T ss_dssp             GCSSHHHHHH---HHTSCTTCCCSCHHHHHTTCSEEEECS-----CSSCSCHHHHTTSCSSCEEEECCSSSCSSCHH--H
T ss_pred             ccccHHHHHH---HhhhcchhhhcchHhhccCcceecccc-----ccccccHHHHhhcCCCCEEEecCCCccchhhh--h
Confidence            0000010000   000000112457889999999766542     57889999999999999999999876644443  4


Q ss_pred             HHHhCCceEEEEecCCCCCCCCCCcccCCCceEEccC
Q 017490          298 YLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPH  334 (370)
Q Consensus       298 aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPH  334 (370)
                      +-..|+...|.     --|.++    -+..|+++-|=
T Consensus       139 a~~~G~ai~At-----Gsp~~p----~Q~NN~yiFPG  166 (222)
T d1vl6a1         139 AREAGAFIVAT-----GRSDHP----NQVNNLLAFPG  166 (222)
T ss_dssp             HHHTTCSEEEE-----SCTTSS----SBCCGGGTHHH
T ss_pred             heeccceEEec-----CCCCCC----ccCcceeecch
Confidence            45567765433     123222    24566666663

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.79  E-value=0.0045  Score=51.36  Aligned_cols=92  Identities=21%  Similarity=0.244  Sum_probs=57.0

Q ss_pred             cCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHH-----
Q 017490          176 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFA-----  247 (370)
Q Consensus       176 ~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell-----  247 (370)
                      +|.+|.|.|. |.+|...++.++.+|++|++..++.++......             -.++...  ...++.+-+     
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~-------------~Ga~~vi~~~~~~~~~~v~~~t~   91 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR-------------LGVEYVGDSRSVDFADEILELTD   91 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT-------------TCCSEEEETTCSTHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCcccccchhhccccccceeeeccccccccccc-------------ccccccccCCccCHHHHHHHHhC
Confidence            5789999885 999999999999999999998775433110000             0011110  112343322     


Q ss_pred             -hcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          248 -SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       248 -~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                       ...|+|+-++.. +.    + ...++.++++..+|.++.
T Consensus        92 ~~g~d~v~d~~g~-~~----~-~~~~~~l~~~G~~v~~G~  125 (183)
T d1pqwa_          92 GYGVDVVLNSLAG-EA----I-QRGVQILAPGGRFIELGK  125 (183)
T ss_dssp             TCCEEEEEECCCT-HH----H-HHHHHTEEEEEEEEECSC
T ss_pred             CCCEEEEEecccc-hH----H-HHHHHHhcCCCEEEEEcc
Confidence             236888877652 21    1 345677888888888754

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.77  E-value=0.0083  Score=49.45  Aligned_cols=74  Identities=9%  Similarity=-0.024  Sum_probs=42.8

Q ss_pred             ceEEEEecCchhHHHHHH--h---ccC-CCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCC
Q 017490          178 KTVFILGFGNIGVELAKR--L---RPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  251 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~--l---~~~-G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  251 (370)
                      .+|.|||.|.+|...+-.  +   ..+ +-++..+|.+..+.....+    +...  ... .........+.++.++.||
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d----~~~~--~~~-~~~~~~~t~~~~~~l~~aD   73 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVD----FVKR--LVK-DRFKVLISDTFEGAVVDAK   73 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHH----HHHH--HHT-TSSEEEECSSHHHHHTTCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHH----HHHh--hhc-cCceEEEecCcccccCCCC
Confidence            379999999999777632  1   212 3589999987654211110    0000  000 0000012357889999999


Q ss_pred             EEEEecc
Q 017490          252 VVVCCLS  258 (370)
Q Consensus       252 iV~l~lP  258 (370)
                      +|+++.-
T Consensus        74 vVVita~   80 (162)
T d1up7a1          74 YVIFQFR   80 (162)
T ss_dssp             EEEECCC
T ss_pred             EEEEecc
Confidence            9999865

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=94.74  E-value=0.015  Score=44.89  Aligned_cols=37  Identities=22%  Similarity=0.229  Sum_probs=33.5

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      ..+++|.|||.|.||-++|..|+.+|.+|..+.+.+.
T Consensus        20 ~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~   56 (121)
T d1mo9a2          20 EPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP   56 (121)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccch
Confidence            3578999999999999999999999999999998643

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.72  E-value=0.04  Score=42.06  Aligned_cols=63  Identities=17%  Similarity=0.149  Sum_probs=45.0

Q ss_pred             cCceEEEEec----------CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHH
Q 017490          176 LGKTVFILGF----------GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFE  245 (370)
Q Consensus       176 ~g~tvGIiGl----------G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e  245 (370)
                      ..|+|||+|+          ..-...+.+.|...|++|.+|||......                  .........++++
T Consensus        14 ~~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~------------------~~~~~~~~~~l~~   75 (108)
T d1dlja3          14 PVKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLE------------------SEDQSVLVNDLEN   75 (108)
T ss_dssp             SSCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCC------------------TTCCSEECCCHHH
T ss_pred             CCCEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhH------------------hccCCEEEeCHHH
Confidence            3468999998          34567789999999999999999765410                  0000112368999


Q ss_pred             HHhcCCEEEEe
Q 017490          246 FASKADVVVCC  256 (370)
Q Consensus       246 ll~~aDiV~l~  256 (370)
                      ++..||+|++.
T Consensus        76 ~~~~sDiII~~   86 (108)
T d1dlja3          76 FKKQANIIVTN   86 (108)
T ss_dssp             HHHHCSEEECS
T ss_pred             HHhhCCEEEEc
Confidence            99999977654

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.69  E-value=0.0051  Score=54.38  Aligned_cols=40  Identities=20%  Similarity=0.393  Sum_probs=36.0

Q ss_pred             cccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          172 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       172 ~~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      |.+|+||++.|.|. +.||+++|+.|...|++|++.||+.+
T Consensus         1 g~rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   41 (250)
T d1ydea1           1 GTRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDES   41 (250)
T ss_dssp             CCTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            45799999999996 78999999999999999999998754

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.64  E-value=0.014  Score=45.76  Aligned_cols=34  Identities=32%  Similarity=0.333  Sum_probs=31.5

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      |++.|||.|.||-++|..++.+|.+|..+.+...
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~   56 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK   56 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccc
Confidence            6899999999999999999999999999998653

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.58  E-value=0.012  Score=48.58  Aligned_cols=104  Identities=14%  Similarity=0.109  Sum_probs=56.6

Q ss_pred             ceEEEEecCchhHHHHHHhccCC----CEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHh--cCC
Q 017490          178 KTVFILGFGNIGVELAKRLRPFG----VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KAD  251 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G----~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aD  251 (370)
                      .+|||||+|.+|+..++.++...    ..+...+......                   ... .....++++++.  +.|
T Consensus         8 ~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~~~~-------------------~~~-~~~~~~~~e~l~~~~iD   67 (172)
T d1lc0a1           8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELG-------------------SLD-EVRQISLEDALRSQEID   67 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCC-------------------EET-TEEBCCHHHHHHCSSEE
T ss_pred             cEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchHHHH-------------------Hhh-ccCcCCHHHHHhCCCcc
Confidence            47999999999999988887543    3333332221110                   000 002347889886  568


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcC-CCcccCHHHHHHHHHhCCce
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA-RGGLLDYEAIAHYLECGHLG  305 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~s-Rg~~vd~~aL~~aL~~g~i~  305 (370)
                      +|++++|..  +..-+-...++.=|  .+++.-= --.+-+.++|.++.++....
T Consensus        68 ~V~I~tp~~--~H~~~~~~al~~gk--~V~~EKP~a~~~~e~~~l~~~a~~~~~~  118 (172)
T d1lc0a1          68 VAYICSESS--SHEDYIRQFLQAGK--HVLVEYPMTLSFAAAQELWELAAQKGRV  118 (172)
T ss_dssp             EEEECSCGG--GHHHHHHHHHHTTC--EEEEESCSCSCHHHHHHHHHHHHHTTCC
T ss_pred             hhhhccccc--ccccccccccccch--hhhcCCCccccHHHHHHHHHHHHHcCCe
Confidence            899998844  32222223343322  2444421 12344556677766655443

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.57  E-value=0.066  Score=43.88  Aligned_cols=103  Identities=18%  Similarity=0.171  Sum_probs=64.6

Q ss_pred             cccCceEEEEecC-chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHHh
Q 017490          174 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFAS  248 (370)
Q Consensus       174 ~l~g~tvGIiGlG-~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~  248 (370)
                      .|.|++|++||=| ++-.+++..+..+|+++....+..-... . .. ....      .+...+.+    ...++++.+.
T Consensus         1 sl~gl~I~~vGD~~nV~~Sli~~~~~~g~~~~~~~P~~~~p~-~-~~-~~~~------~~~~~~~~~~i~~~~d~~~~~~   71 (170)
T d1otha2           1 SLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPD-A-SV-TKLA------EQYAKENGTKLLLTNDPLEAAH   71 (170)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCC-H-HH-HHHH------HHHHHHHTCCEEEESCHHHHHT
T ss_pred             CCCCCEEEEEcCchhHHHHHHHHHHHcCCEEEEEeccccCCc-h-HH-HHHH------HHHHhccCCEEEEEcCHHHHHh
Confidence            3789999999965 3556677777889999998876432210 0 00 0000      00011111    2468999999


Q ss_pred             cCCEEEEeccCChh------------hhcccCHHHHhcCCCCcEEEEcC
Q 017490          249 KADVVVCCLSLNKQ------------TAGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       249 ~aDiV~l~lP~t~~------------t~~li~~~~l~~mk~gailIN~s  285 (370)
                      .+|+|.........            ....++.+.++.++++++|.-+.
T Consensus        72 ~advi~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~MHpl  120 (170)
T d1otha2          72 GGNVLITDTWISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCL  120 (170)
T ss_dssp             TCSEEEECCSSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECS
T ss_pred             hhhheeeeceecccchhhhHHHHHHHhhhhhhhhhhhccCCceEEecCC
Confidence            99999876543211            12446778888899999888773

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=94.56  E-value=0.052  Score=43.87  Aligned_cols=91  Identities=16%  Similarity=0.142  Sum_probs=48.4

Q ss_pred             ceEEEEec-CchhHHHHHHhcc-C---CCEEEEEcCCCccccccccccchhhhccccccccccc-cCCC-CCHHHHHhcC
Q 017490          178 KTVFILGF-GNIGVELAKRLRP-F---GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE-KGCH-EDIFEFASKA  250 (370)
Q Consensus       178 ~tvGIiGl-G~IG~~vA~~l~~-~---G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~l~ell~~a  250 (370)
                      ++|||||. |.+|+++.++|.. .   ..++..+..+......+               ..... .... ..-.+.+.++
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~---------------~~~~~~~~~~~~~~~~~~~~~   65 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAP---------------NFGKDAGMLHDAFDIESLKQL   65 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCC---------------CSSSCCCBCEETTCHHHHTTC
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccccccccc---------------ccCCcceeeecccchhhhccc
Confidence            47999994 9999999987753 2   24665543322111110               00000 0001 1123557899


Q ss_pred             CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                      |+|++|+|... +..+.  ..+..-..++++|+.|.
T Consensus        66 DvvF~alp~~~-s~~~~--~~l~~~g~~~~VIDlSs   98 (147)
T d1mb4a1          66 DAVITCQGGSY-TEKVY--PALRQAGWKGYWIDAAS   98 (147)
T ss_dssp             SEEEECSCHHH-HHHHH--HHHHHTTCCSEEEESSS
T ss_pred             cEEEEecCchH-HHHHh--HHHHHcCCceEEEeCCc
Confidence            99999999532 22222  22222233467888774

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.49  E-value=0.014  Score=45.25  Aligned_cols=34  Identities=21%  Similarity=0.309  Sum_probs=31.0

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      +++.|||.|.||-++|..++.+|++|..+.+...
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~   56 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK   56 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CeEEEECCChHHHHHHHHHHHcCCceEEEEeecc
Confidence            6799999999999999999999999999887643

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.49  E-value=0.0087  Score=46.83  Aligned_cols=35  Identities=20%  Similarity=0.380  Sum_probs=32.1

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      +++.|||.|.||-++|..+..+|++|..+.+....
T Consensus        26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~   60 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEI   60 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CeEEEEccchHHHHHHHHHHhcCCeEEEEEEcccc
Confidence            68999999999999999999999999999887543

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.46  E-value=0.017  Score=50.57  Aligned_cols=38  Identities=29%  Similarity=0.481  Sum_probs=34.4

Q ss_pred             cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      .|+||++.|.|. +.||+++|++|...|++|++.+|+..
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~   42 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQA   42 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH
Confidence            589999999996 67999999999999999999998743

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.46  E-value=0.011  Score=46.30  Aligned_cols=32  Identities=22%  Similarity=0.352  Sum_probs=29.6

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCC
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRS  209 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~  209 (370)
                      +++.|||.|.||-++|..++.+|.+|..+.++
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            57999999999999999999999999998764

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=94.45  E-value=0.015  Score=48.19  Aligned_cols=38  Identities=21%  Similarity=0.363  Sum_probs=33.8

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCcc
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  212 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~  212 (370)
                      -.|.+|.|+|.|.+|...++.++..|+ +|++.|++..+
T Consensus        26 ~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~k   64 (174)
T d1p0fa2          26 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDK   64 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGG
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHH
Confidence            468899999999999999999999997 79999987654

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.34  E-value=0.017  Score=45.02  Aligned_cols=37  Identities=24%  Similarity=0.265  Sum_probs=33.1

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      ..+++|.|||.|.+|-++|..|+.+|.+|..+++...
T Consensus        28 ~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~   64 (123)
T d1nhpa2          28 PEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDR   64 (123)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             cCCCEEEEECChHHHHHHHHHhhccceEEEEEEecCc
Confidence            3478999999999999999999999999999987643

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=94.33  E-value=0.0083  Score=48.58  Aligned_cols=101  Identities=17%  Similarity=0.219  Sum_probs=57.3

Q ss_pred             ceEEEEecCchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCCEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVV  253 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV  253 (370)
                      .+|+|||.|.+|..+|..+...|.  ++..+|.+......   ...++....    .......  ...+. +.++.||+|
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g---~a~Dl~~a~----~~~~~~~i~~~~~~-~~~~daDvV   73 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEA---EVLDMQHGS----SFYPTVSIDGSDDP-EICRDADMV   73 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHH---HHHHHHHTG----GGSTTCEEEEESCG-GGGTTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchh---HHHHHHhcc----ccCCCceeecCCCH-HHhhCCcEE
Confidence            479999999999999988765555  89999987543210   000111000    0000000  12344 457899999


Q ss_pred             EEeccC--Ch-hhh-ccc--CH-------HHHhcCCCCcEEEEcCC
Q 017490          254 VCCLSL--NK-QTA-GIV--NK-------SFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       254 ~l~lP~--t~-~t~-~li--~~-------~~l~~mk~gailIN~sR  286 (370)
                      +++.-.  .+ +++ .++  |.       ..+....|.+++|+++.
T Consensus        74 VitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtN  119 (143)
T d1llda1          74 VITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITN  119 (143)
T ss_dssp             EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred             EEecccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence            998542  22 121 122  11       23445578889999864

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.32  E-value=0.043  Score=44.30  Aligned_cols=108  Identities=17%  Similarity=0.159  Sum_probs=57.3

Q ss_pred             ceEEEEec-CchhHHHHHHhccC----CCEEEEEcCCCccccccccccchhhhccccccccccccCCC-CCHHHHHhcCC
Q 017490          178 KTVFILGF-GNIGVELAKRLRPF----GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCH-EDIFEFASKAD  251 (370)
Q Consensus       178 ~tvGIiGl-G~IG~~vA~~l~~~----G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~ell~~aD  251 (370)
                      |+|||||. |.+|+++.++|...    -.++..+..+........       +.       ....... ..-.+.+..+|
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~-------~~-------~~~~~~~~~~~~~~~~~~D   67 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPS-------FG-------GTTGTLQDAFDLEALKALD   67 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCG-------GG-------TCCCBCEETTCHHHHHTCS
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccccccccc-------cc-------CCceeeecccchhhhhcCc
Confidence            58999996 99999999865422    235665554332211100       00       0000011 11123578999


Q ss_pred             EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcc-----------cCHHHHHHHHHhC
Q 017490          252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL-----------LDYEAIAHYLECG  302 (370)
Q Consensus       252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~-----------vd~~aL~~aL~~g  302 (370)
                      ++++++|...+ ..+  ...+..-..+.++|+.|.--=           |+.+.|-.++++|
T Consensus        68 ivF~a~~~~~s-~~~--~~~~~~~g~~~~VID~Ss~fR~~~dvplviPEVN~~~i~~~~~~g  126 (146)
T d1t4ba1          68 IIVTCQGGDYT-NEI--YPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGLNNG  126 (146)
T ss_dssp             EEEECSCHHHH-HHH--HHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTT
T ss_pred             EEEEecCchHH-HHh--hHHHHhcCCCeecccCCcccccCCCCcEECCCcCHHHHHHHHHcC
Confidence            99999985432 222  122322334467888774322           3455566666654

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=94.30  E-value=0.044  Score=44.35  Aligned_cols=72  Identities=19%  Similarity=0.165  Sum_probs=49.5

Q ss_pred             cccCceEEEEec---CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHH
Q 017490          174 TLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEF  246 (370)
Q Consensus       174 ~l~g~tvGIiGl---G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~el  246 (370)
                      .|.|++|++||=   +++.++++..+..+|+++..+-+..-..  +...           .....+.+    ...++++.
T Consensus         1 kl~gl~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~--~~~~-----------~~~~~~~~~~~~~~~d~~~a   67 (157)
T d1ml4a2           1 RIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRM--PRHI-----------VEELREKGMKVVETTTLEDV   67 (157)
T ss_dssp             CSSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCC--CHHH-----------HHHHHHTTCCEEEESCTHHH
T ss_pred             CcCCCEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhc--chHH-----------HHHHHhhcccceeecCHHHh
Confidence            378999999996   6899999999999999999887642221  0000           00011111    24689999


Q ss_pred             HhcCCEEEEecc
Q 017490          247 ASKADVVVCCLS  258 (370)
Q Consensus       247 l~~aDiV~l~lP  258 (370)
                      ++.+|+|....-
T Consensus        68 v~~aDvvy~~~~   79 (157)
T d1ml4a2          68 IGKLDVLYVTRI   79 (157)
T ss_dssp             HTTCSEEEECCC
T ss_pred             hccCcEEEeecc
Confidence            999998877643

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.30  E-value=0.018  Score=44.91  Aligned_cols=35  Identities=31%  Similarity=0.417  Sum_probs=32.4

Q ss_pred             CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      ++++.|||.|.+|-++|..|+..|.+|..+++...
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~   64 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPR   64 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeeccc
Confidence            57999999999999999999999999999998654

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.29  E-value=0.021  Score=49.92  Aligned_cols=38  Identities=26%  Similarity=0.434  Sum_probs=34.0

Q ss_pred             cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      +|+||++.|.|. +.||+++|+.|...|++|++.+|+.+
T Consensus         2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNS   40 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            589999999997 57999999999999999999998743

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=94.21  E-value=0.18  Score=41.74  Aligned_cols=103  Identities=16%  Similarity=0.193  Sum_probs=60.5

Q ss_pred             ceEEEEec-CchhHHHHHHhccC-CCEEEEEcCCCccccccccccchhhhcccccccccccc-CCCCCHHHHHhcCCEEE
Q 017490          178 KTVFILGF-GNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-GCHEDIFEFASKADVVV  254 (370)
Q Consensus       178 ~tvGIiGl-G~IG~~vA~~l~~~-G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ell~~aDiV~  254 (370)
                      .+|||+|. |.+|+++.+.|..+ .+++...-.+........     ..++     ...... ....+.+++..++|+|+
T Consensus         2 ikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~-----~~~p-----~~~~~~~~~~~~~~~~~~~~dvvf   71 (176)
T d1vkna1           2 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLE-----EIFP-----STLENSILSEFDPEKVSKNCDVLF   71 (176)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHH-----HHCG-----GGCCCCBCBCCCHHHHHHHCSEEE
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCccc-----ccCc-----hhhccccccccCHhHhccccceEE
Confidence            47999995 99999999999764 346655432211111000     0000     011111 12356777888999999


Q ss_pred             EeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 017490          255 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAH  297 (370)
Q Consensus       255 l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~  297 (370)
                      +++|.... .     +..... .+..+||.|-.-=.+....++
T Consensus        72 ~a~p~~~s-~-----~~~~~~-~~~~VIDlSadfRl~~~~~y~  107 (176)
T d1vkna1          72 TALPAGAS-Y-----DLVREL-KGVKIIDLGADFRFDDPGVYR  107 (176)
T ss_dssp             ECCSTTHH-H-----HHHTTC-CSCEEEESSSTTTCSSHHHHH
T ss_pred             EccccHHH-H-----HHHHhh-ccceEEecCccccccchhhHH
Confidence            99996543 2     222333 578999999766565554444

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=94.20  E-value=0.021  Score=50.13  Aligned_cols=36  Identities=25%  Similarity=0.247  Sum_probs=32.9

Q ss_pred             ccCceEEEEec-C--chhHHHHHHhccCCCEEEEEcCCC
Q 017490          175 LLGKTVFILGF-G--NIGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       175 l~g~tvGIiGl-G--~IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      |+||++.|.|. |  .||+++|+.|...|++|+..+|+.
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~   41 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE   41 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            78999999996 4  599999999999999999999874

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.16  E-value=0.012  Score=47.68  Aligned_cols=33  Identities=24%  Similarity=0.288  Sum_probs=28.5

Q ss_pred             ceEEEEec-CchhHHHHHHhccCCC--EEEEEcCCC
Q 017490          178 KTVFILGF-GNIGVELAKRLRPFGV--KIIATKRSW  210 (370)
Q Consensus       178 ~tvGIiGl-G~IG~~vA~~l~~~G~--~V~~~dr~~  210 (370)
                      .+|+|||. |.+|+.+|..+...|.  ++..+|+..
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~   36 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH   36 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence            37999995 9999999999987775  899999864

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.06  E-value=0.02  Score=44.45  Aligned_cols=35  Identities=31%  Similarity=0.391  Sum_probs=31.6

Q ss_pred             CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      ++++.|||.|.+|-++|..|+.+|.+|..+++.+.
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   66 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM   66 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence            46899999999999999999999999999987643

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=94.03  E-value=0.035  Score=48.59  Aligned_cols=83  Identities=20%  Similarity=0.202  Sum_probs=48.8

Q ss_pred             ceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCCCCHHHHHhcCCEEEE
Q 017490          178 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVVC  255 (370)
Q Consensus       178 ~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~l  255 (370)
                      ++|.|+| .|.||+.+++.|...|++|++..|+............ .......+ +.+. .......+.+.+..++.++.
T Consensus         4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~-~~~~~~~v-~~v~~d~~d~~~~~~~~~~~~~~~~   81 (312)
T d1qyda_           4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQML-LYFKQLGA-KLIEASLDDHQRLVDALKQVDVVIS   81 (312)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHH-HHHHTTTC-EEECCCSSCHHHHHHHHTTCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHH-hhhccCCc-EEEEeecccchhhhhhccCcchhhh
Confidence            5699999 5999999999999999999999986543211100000 00000000 0000 00112345667889999998


Q ss_pred             eccCChh
Q 017490          256 CLSLNKQ  262 (370)
Q Consensus       256 ~lP~t~~  262 (370)
                      +.+....
T Consensus        82 ~~~~~~~   88 (312)
T d1qyda_          82 ALAGGVL   88 (312)
T ss_dssp             CCCCSSS
T ss_pred             hhhhccc
Confidence            8875433

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.03  E-value=0.016  Score=45.48  Aligned_cols=34  Identities=21%  Similarity=0.344  Sum_probs=31.4

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      +++.|||.|.||-++|..++.+|.+|..+.+...
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~   60 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDG   60 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecc
Confidence            6899999999999999999999999999988653

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=94.00  E-value=0.023  Score=47.07  Aligned_cols=72  Identities=15%  Similarity=0.148  Sum_probs=43.7

Q ss_pred             CceEEEEecCchhHHHH---HHhc--cC-CCEEEEEcCCCccccccccccchhhhccccccccccccC------CCCCHH
Q 017490          177 GKTVFILGFGNIGVELA---KRLR--PF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG------CHEDIF  244 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA---~~l~--~~-G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~  244 (370)
                      +.+|+|||.|.+|...+   ..++  .+ +-++..+|.+.+........   .       ........      ...+.+
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~---~-------~~~~~~~~~~~~i~~~td~~   71 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTI---A-------KKYVEEVGADLKFEKTMNLD   71 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHH---H-------HHHHHHTTCCCEEEEESCHH
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHH---H-------HHHHHhcCCCeEEEEeCChh
Confidence            46899999999997643   2332  33 45999999976542110000   0       00011111      236899


Q ss_pred             HHHhcCCEEEEecc
Q 017490          245 EFASKADVVVCCLS  258 (370)
Q Consensus       245 ell~~aDiV~l~lP  258 (370)
                      +.++.||+|+++.-
T Consensus        72 eaL~dad~Vv~~~~   85 (171)
T d1obba1          72 DVIIDADFVINTAM   85 (171)
T ss_dssp             HHHTTCSEEEECCC
T ss_pred             hcccCCCeEeeecc
Confidence            99999999998754

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=93.92  E-value=0.053  Score=44.36  Aligned_cols=38  Identities=21%  Similarity=0.417  Sum_probs=33.8

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCcc
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  212 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~  212 (370)
                      -.|.+|.|+|.|.+|...+..++.+|+ +|++.+++.++
T Consensus        27 k~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k   65 (176)
T d2jhfa2          27 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDK   65 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHH
Confidence            368899999999999999999999986 89999987665

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=93.85  E-value=0.038  Score=47.81  Aligned_cols=36  Identities=22%  Similarity=0.329  Sum_probs=31.9

Q ss_pred             CceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          177 GKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       177 g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      -|+|.|+|. |.||+.+++.|...|++|++++|....
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~   39 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA   39 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence            478999995 999999999999999999999987554

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=93.82  E-value=0.033  Score=44.93  Aligned_cols=103  Identities=19%  Similarity=0.131  Sum_probs=57.6

Q ss_pred             ceEEEEec-CchhHHHHHHhc---cCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEE
Q 017490          178 KTVFILGF-GNIGVELAKRLR---PFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  253 (370)
Q Consensus       178 ~tvGIiGl-G~IG~~vA~~l~---~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  253 (370)
                      .+|+|||. |.+|+.+|-.++   .++-++..+|..+...-...    ++....   ...........+..+.++.||+|
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~----Dl~h~~---~~~~~~~~~~~~~~~~~~~aDvv   73 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAV----DLSHIP---TAVKIKGFSGEDATPALEGADVV   73 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHH----HHHTSC---SSCEEEEECSSCCHHHHTTCSEE
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHH----HHHCCc---cccCCcEEEcCCCccccCCCCEE
Confidence            47999995 999999998763   35679999997532210000    110000   00000000123344678899999


Q ss_pred             EEecc--CChh-hh-ccc--CH-------HHHhcCCCCcEEEEcCCC
Q 017490          254 VCCLS--LNKQ-TA-GIV--NK-------SFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       254 ~l~lP--~t~~-t~-~li--~~-------~~l~~mk~gailIN~sRg  287 (370)
                      +++.-  ..+. +| .++  |.       +.+....|.+++|.++..
T Consensus        74 vitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtNP  120 (145)
T d2cmda1          74 LISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP  120 (145)
T ss_dssp             EECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSS
T ss_pred             EECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccCC
Confidence            99853  2222 21 222  22       234455788999999654

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.76  E-value=0.012  Score=48.20  Aligned_cols=91  Identities=16%  Similarity=0.171  Sum_probs=55.6

Q ss_pred             cCceEEEEec-CchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhcccccccc-ccccC--CCCCH-HHHHh-
Q 017490          176 LGKTVFILGF-GNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDL-VDEKG--CHEDI-FEFAS-  248 (370)
Q Consensus       176 ~g~tvGIiGl-G~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~l-~ell~-  248 (370)
                      .|.+|.|+|. |.+|...++.++..|. +|++.+++.++.....              +. ++...  ...++ ++..+ 
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~--------------~~Ga~~~i~~~~~~~~~~~~~~   92 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAK--------------RAGADYVINASMQDPLAEIRRI   92 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHH--------------HHTCSEEEETTTSCHHHHHHHH
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHH--------------HcCCceeeccCCcCHHHHHHHH
Confidence            5789999995 9999999999998885 8999988754421100              00 00100  11222 23332 


Q ss_pred             ----cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcC
Q 017490          249 ----KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       249 ----~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~s  285 (370)
                          ..|+++-|.... ++   + ...+..+++|..++.++
T Consensus        93 ~~~~~~d~vid~~g~~-~~---~-~~a~~~l~~~G~iv~~G  128 (170)
T d1jvba2          93 TESKGVDAVIDLNNSE-KT---L-SVYPKALAKQGKYVMVG  128 (170)
T ss_dssp             TTTSCEEEEEESCCCH-HH---H-TTGGGGEEEEEEEEECC
T ss_pred             hhcccchhhhcccccc-hH---H-HhhhhhcccCCEEEEec
Confidence                368887776532 22   1 13456688888888774

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.67  E-value=0.023  Score=45.96  Aligned_cols=106  Identities=17%  Similarity=0.197  Sum_probs=60.2

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCC
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKAD  251 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aD  251 (370)
                      -.+++|+|||.|.+|..+|..+...|.  ++..||+....... ..  .++....    ....... ......+.++.||
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g-~a--~Dl~~~~----~~~~~~~~~~~~d~~~l~daD   76 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIG-DA--MDFNHGK----VFAPKPVDIWHGDYDDCRDAD   76 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHH-HH--HHHHHHT----TSSSSCCEEEECCGGGTTTCS
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccc-hh--ccHhhCc----cccCCCeEEEECCHHHhccce
Confidence            467899999999999999998876554  89999986543110 00  0110000    0000000 0122346688999


Q ss_pred             EEEEeccCCh---hhh-ccc--CH-------HHHhcCCCCcEEEEcCCC
Q 017490          252 VVVCCLSLNK---QTA-GIV--NK-------SFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       252 iV~l~lP~t~---~t~-~li--~~-------~~l~~mk~gailIN~sRg  287 (370)
                      +|+++.....   +++ .++  |.       +.+++..|.+++|+++..
T Consensus        77 vvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtNP  125 (148)
T d1ldna1          77 LVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNP  125 (148)
T ss_dssp             EEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSS
T ss_pred             eEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecCc
Confidence            9999754321   111 112  11       134445688999998543

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=93.64  E-value=0.022  Score=45.75  Aligned_cols=35  Identities=20%  Similarity=0.321  Sum_probs=31.2

Q ss_pred             cCceEEEEecCchhHHHHHHhccCC--CEEEEEcCCC
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFG--VKIIATKRSW  210 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G--~~V~~~dr~~  210 (370)
                      +||+|.|||.|.+|-++|..|+.+|  .+|+.+++.+
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            5899999999999999999998877  5899998765

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=93.63  E-value=0.049  Score=44.34  Aligned_cols=37  Identities=19%  Similarity=0.390  Sum_probs=31.9

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCcc
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  212 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~  212 (370)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++.+
T Consensus        28 ~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k   65 (176)
T d2fzwa2          28 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDK   65 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGG
T ss_pred             CCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHH
Confidence            58899999999999999999999997 67778776544

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.59  E-value=0.023  Score=43.59  Aligned_cols=34  Identities=24%  Similarity=0.429  Sum_probs=31.4

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      +++.|||.|.+|-++|..++.+|++|..+++...
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~   55 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARER   55 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHhhcccceEEEeeecc
Confidence            7899999999999999999999999999988654

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=93.55  E-value=0.0081  Score=52.57  Aligned_cols=38  Identities=26%  Similarity=0.424  Sum_probs=33.9

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCC
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  210 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~  210 (370)
                      ..|++++|.|+|+|.+|..+|+.|...|. ++..+|...
T Consensus        26 ~kL~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   64 (247)
T d1jw9b_          26 EALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   64 (247)
T ss_dssp             HHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             HHHhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence            45999999999999999999999999998 788888653

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=93.51  E-value=0.035  Score=49.35  Aligned_cols=41  Identities=22%  Similarity=0.396  Sum_probs=36.7

Q ss_pred             cccccCceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          172 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       172 ~~~l~g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      ..+|+||++.|.| .|.||+++|+.|...|++|++.+|+..+
T Consensus        20 ~~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~   61 (294)
T d1w6ua_          20 PNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDV   61 (294)
T ss_dssp             TTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence            3589999999999 5899999999999999999999987543

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=93.50  E-value=0.02  Score=44.74  Aligned_cols=88  Identities=14%  Similarity=0.119  Sum_probs=49.2

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHH----HhcCCEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF----ASKADVV  253 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~aDiV  253 (370)
                      |.+-|+|+|.+|+.+++.|++.+  |.+.+.++........            .....-.+...+.+.+    +.+|+.+
T Consensus         1 kHivI~G~g~~g~~l~~~L~~~~--i~vi~~d~~~~~~~~~------------~~~~~i~Gd~~~~~~L~~a~i~~A~~v   66 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELRGSE--VFVLAEDENVRKKVLR------------SGANFVHGDPTRVSDLEKANVRGARAV   66 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSCGGG--EEEEESCTTHHHHHHH------------TTCEEEESCTTSHHHHHHTTCTTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHcCCC--CEEEEcchHHHHHHHh------------cCccccccccCCHHHHHHhhhhcCcEE
Confidence            45789999999999999998654  6666665443211000            0000011223333222    5689999


Q ss_pred             EEeccCChhhhcccCHHHHhcCCCCcEE
Q 017490          254 VCCLSLNKQTAGIVNKSFLSSMKKGSLL  281 (370)
Q Consensus       254 ~l~lP~t~~t~~li~~~~l~~mk~gail  281 (370)
                      +++.+....+.  .-....+.+.|...+
T Consensus        67 i~~~~~d~~n~--~~~~~~r~~~~~~~i   92 (129)
T d2fy8a1          67 IVNLESDSETI--HCILGIRKIDESVRI   92 (129)
T ss_dssp             EECCSSHHHHH--HHHHHHHHHCSSSCE
T ss_pred             EEeccchhhhH--HHHHHHHHHCCCceE
Confidence            99887554433  223344555555433

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.49  E-value=0.12  Score=41.85  Aligned_cols=102  Identities=18%  Similarity=0.172  Sum_probs=60.7

Q ss_pred             ccCceEEEEec--CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccccc----CCCCCHHHHHh
Q 017490          175 LLGKTVFILGF--GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK----GCHEDIFEFAS  248 (370)
Q Consensus       175 l~g~tvGIiGl--G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~ell~  248 (370)
                      |.|++|++||=  .++-.+++..+..||+++...-+..-........     .    ......+.    ....++++.++
T Consensus         1 l~g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~-----~----~~~~~~~~~~~i~~~~d~~~ai~   71 (161)
T d1vlva2           1 LKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFK-----R----CQEIVKETDGSVSFTSNLEEALA   71 (161)
T ss_dssp             STTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHH-----H----HHHHHHHHCCEEEEESCHHHHHT
T ss_pred             CCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHH-----H----HHHHHhhcCCceEEEecHHHhhh
Confidence            67999999994  5799999999999999999887632110000000     0    00000111    12368999999


Q ss_pred             cCCEEEEeccCChh------------hhcccC-HHHHhcCCCCcEEEEcC
Q 017490          249 KADVVVCCLSLNKQ------------TAGIVN-KSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       249 ~aDiV~l~lP~t~~------------t~~li~-~~~l~~mk~gailIN~s  285 (370)
                      .+|+|..-.--...            ....+. ......+|++++|.-+.
T Consensus        72 ~aDviyt~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~MH~l  121 (161)
T d1vlva2          72 GADVVYTDVWASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCL  121 (161)
T ss_dssp             TCSEEEECCCC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             hhhheeccceeeecccccchhhhccccceeeeehhhhcccCCCeeEecCC
Confidence            99999875432110            111223 33444578888888764

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.48  E-value=0.033  Score=43.95  Aligned_cols=36  Identities=17%  Similarity=0.250  Sum_probs=32.9

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      .++++.|||-|.+|-++|..++..|.+|..+++...
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~   69 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAAR   69 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeeccc
Confidence            368999999999999999999999999999998654

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=93.45  E-value=0.043  Score=44.51  Aligned_cols=62  Identities=23%  Similarity=0.196  Sum_probs=45.3

Q ss_pred             cCceEEEEec---CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCE
Q 017490          176 LGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  252 (370)
Q Consensus       176 ~g~tvGIiGl---G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  252 (370)
                      .|.+|++||=   +++.++++..+..+|+++....+..-..  .               +  .......++++.++.+|+
T Consensus         2 ~gl~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~--~---------------~--~~~~~~~~~~ea~~~aDv   62 (151)
T d2at2a2           2 KGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQD--E---------------E--NTFGTYVSMDEAVESSDV   62 (151)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhc--c---------------c--cceeEEEechhccccCce
Confidence            5889999995   6799999999999999998876542110  0               0  011134578899999999


Q ss_pred             EEEe
Q 017490          253 VVCC  256 (370)
Q Consensus       253 V~l~  256 (370)
                      |...
T Consensus        63 iy~~   66 (151)
T d2at2a2          63 VMLL   66 (151)
T ss_pred             eeee
Confidence            8764

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=93.40  E-value=0.046  Score=47.61  Aligned_cols=38  Identities=32%  Similarity=0.429  Sum_probs=33.8

Q ss_pred             cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      +|+||++-|.|. +.||+++|++|...|++|+..+|+.+
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~   39 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSEN   39 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            478999999996 67999999999999999999998754

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=93.38  E-value=0.032  Score=44.75  Aligned_cols=33  Identities=9%  Similarity=0.135  Sum_probs=29.8

Q ss_pred             eEEEEecCchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      .+-|+|+|.+|+.+++.|...|.+|++++..+.
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~   37 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPE   37 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccch
Confidence            477999999999999999999999999987654

>d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=93.33  E-value=0.11  Score=43.82  Aligned_cols=102  Identities=19%  Similarity=0.285  Sum_probs=67.5

Q ss_pred             HHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCCEEEEe-ccCChhhhccc
Q 017490          191 ELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCC-LSLNKQTAGIV  267 (370)
Q Consensus       191 ~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~l~-lP~t~~t~~li  267 (370)
                      ..+++|..+|++|++=.-.....        .|      .++...+.|  -..+-++++.++|+|+-. .|...+    .
T Consensus        21 ~~vkkl~~~G~~V~vE~gaG~~a--------~f------sD~~Y~~aGA~i~~~~~~~~~~~diilkV~~P~~~e----~   82 (194)
T d1l7da2          21 EVVKKLVGLGFEVIVEQGAGVGA--------SI------TDDALTAAGATIASTAAQALSQADVVWKVQRPMTAE----E   82 (194)
T ss_dssp             HHHHHHHHTTCEEEEETTTTGGG--------TC------CHHHHHHTTCEEESSHHHHHSSCSEEEEEECCCCGG----G
T ss_pred             HHHHHHHHCCCEEEEEcCccccc--------CC------CHHHHHHhhhhcchhhhhhhhcccceeEecCCcccc----c
Confidence            56788999999999843221111        00      011112222  124678899999988754 454332    2


Q ss_pred             CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecC
Q 017490          268 NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVA  312 (370)
Q Consensus       268 ~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~  312 (370)
                      +.+.++.||+|+++|..-  ......+++++|.+.++...++|..
T Consensus        83 ~~~ei~~lk~g~~li~~l--~p~~~~~~~~~l~~~~it~~a~e~i  125 (194)
T d1l7da2          83 GTDEVALIKEGAVLMCHL--GALTNRPVVEALTKRKITAYAMELM  125 (194)
T ss_dssp             SCCGGGGSCTTCEEEEEC--CGGGCHHHHHHHHHTTCEEEEGGGC
T ss_pred             chhHhhhccCceEEEEec--ccccchhHHHHHHhcCceEEeeecc
Confidence            345788899999999764  4567788999999999998877764

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=93.26  E-value=0.055  Score=47.05  Aligned_cols=39  Identities=23%  Similarity=0.268  Sum_probs=34.4

Q ss_pred             cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      .|+||++.|.|. +.||+++|+.|...|++|+..+|+.++
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~   41 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGP   41 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            488999999996 569999999999999999999987543

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=93.23  E-value=0.036  Score=45.51  Aligned_cols=108  Identities=9%  Similarity=0.178  Sum_probs=63.2

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhc
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASK  249 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~  249 (370)
                      ..+..++|+|||.|.+|..+|..+...|.  ++..||.+.+....   +..++....    ....... ....-.+.+++
T Consensus        16 ~~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g---~alDl~h~~----~~~~~~~~~~~~d~~~~~~   88 (160)
T d1i0za1          16 ATVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKG---EMMDLQHGS----LFLQTPKIVADKDYSVTAN   88 (160)
T ss_dssp             CCCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHH---HHHHHHHTG----GGCCCSEEEECSSGGGGTT
T ss_pred             ccCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHH---HHHHHhccc----cccCCCeEEeccchhhccc
Confidence            34667899999999999999999987777  89999987543210   001111000    0000000 11222456789


Q ss_pred             CCEEEEeccC--Ch-hhhc-cc--CHH-------HHhcCCCCcEEEEcCCC
Q 017490          250 ADVVVCCLSL--NK-QTAG-IV--NKS-------FLSSMKKGSLLVNIARG  287 (370)
Q Consensus       250 aDiV~l~lP~--t~-~t~~-li--~~~-------~l~~mk~gailIN~sRg  287 (370)
                      ||+|+++.-.  .+ +++- ++  |.+       .++...|.+++|+++..
T Consensus        89 adiVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtNP  139 (160)
T d1i0za1          89 SKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNP  139 (160)
T ss_dssp             CSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred             ccEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCc
Confidence            9999997542  22 2221 22  111       24445788999999764

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=93.09  E-value=0.03  Score=47.43  Aligned_cols=34  Identities=32%  Similarity=0.363  Sum_probs=31.3

Q ss_pred             CceEEEEecCchhHHHHHHhccCCCEEEEEcCCC
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      -++|.|||.|-.|...|..|+..|++|.++++..
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4689999999999999999999999999999853

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=93.07  E-value=0.034  Score=48.54  Aligned_cols=39  Identities=21%  Similarity=0.440  Sum_probs=34.2

Q ss_pred             ccccCceEEEEecC---chhHHHHHHhccCCCEEEEEcCCCc
Q 017490          173 ETLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       173 ~~l~g~tvGIiGlG---~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      .+|+||++.|.|.+   .||+++|++|...|++|++.+++.+
T Consensus         4 ~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~   45 (256)
T d1ulua_           4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER   45 (256)
T ss_dssp             ECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHH
Confidence            46899999999975   5999999999999999999887643

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=93.01  E-value=0.035  Score=48.83  Aligned_cols=40  Identities=30%  Similarity=0.416  Sum_probs=35.3

Q ss_pred             ccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          173 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       173 ~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      ++|+||++.|.|. +.||+++|+.|...|++|+..||+.+.
T Consensus         1 krL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~   41 (260)
T d1zema1           1 KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREA   41 (260)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            4689999999997 569999999999999999999987543

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.99  E-value=0.015  Score=51.07  Aligned_cols=38  Identities=18%  Similarity=0.235  Sum_probs=34.3

Q ss_pred             cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      .|+||++.|.|. +.||+++|+.|...|++|++.+|+.+
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~   41 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDE   41 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            489999999997 66999999999999999999998754

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=92.95  E-value=0.041  Score=47.09  Aligned_cols=36  Identities=25%  Similarity=0.216  Sum_probs=32.5

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      ..++|.|||.|..|..+|..|+..|.+|.++++...
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~   38 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   38 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            457899999999999999999999999999998643

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=92.85  E-value=0.028  Score=49.08  Aligned_cols=38  Identities=21%  Similarity=0.352  Sum_probs=33.3

Q ss_pred             cccCceEEEEec-Cc--hhHHHHHHhccCCCEEEEEcCCCc
Q 017490          174 TLLGKTVFILGF-GN--IGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~--IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      .|+||++.|.|. |.  ||+++|+.|+..|++|+..+++..
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~   43 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRL   43 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChH
Confidence            389999999996 54  999999999999999999887654

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=92.84  E-value=0.033  Score=48.91  Aligned_cols=40  Identities=23%  Similarity=0.389  Sum_probs=35.5

Q ss_pred             ccccCceEEEEecC-chhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          173 ETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       173 ~~l~g~tvGIiGlG-~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      ..++||++.|.|.+ .||+++|+.|...|++|++.+|+..+
T Consensus         5 m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~   45 (260)
T d1h5qa_           5 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAAD   45 (260)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTT
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            36899999999975 59999999999999999999997654

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=92.83  E-value=0.034  Score=44.59  Aligned_cols=102  Identities=14%  Similarity=0.152  Sum_probs=56.4

Q ss_pred             ceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC--C-CCCHHHHHhcCCEE
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--C-HEDIFEFASKADVV  253 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~l~ell~~aDiV  253 (370)
                      ++|+|||.|.+|..+|-.+...+. +++.+|......... .  .++...    ........  . ..+. +.+++||+|
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~-~--~Dl~~~----~~~~~~~~~i~~~~d~-~~~~~advv   73 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGK-A--LDLYEA----SPIEGFDVRVTGTNNY-ADTANSDVI   73 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHH-H--HHHHTT----HHHHTCCCCEEEESCG-GGGTTCSEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhH-H--HHhhcc----ccccCCCCEEEecCcH-HHhcCCCEE
Confidence            589999999999999988875555 899999876432110 0  011000    00000000  1 1233 456899999


Q ss_pred             EEeccC--Ch-hhh-ccc--CH-------HHHhcCCCCcEEEEcCCC
Q 017490          254 VCCLSL--NK-QTA-GIV--NK-------SFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       254 ~l~lP~--t~-~t~-~li--~~-------~~l~~mk~gailIN~sRg  287 (370)
                      +++...  .+ .++ .++  |.       +.+.+..|.++++.++..
T Consensus        74 vitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtNP  120 (142)
T d1uxja1          74 VVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNP  120 (142)
T ss_dssp             EECCSCC---------CHHHHHHHHHHHHHHHGGGCTTCEEEECSSS
T ss_pred             EEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCCc
Confidence            999742  22 122 222  11       124445778899988654

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=92.82  E-value=0.031  Score=48.77  Aligned_cols=35  Identities=29%  Similarity=0.255  Sum_probs=32.0

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCC
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      ..|+|.|||.|..|...|..|+..|++|.++++..
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            45799999999999999999999999999999754

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.73  E-value=0.057  Score=44.17  Aligned_cols=108  Identities=11%  Similarity=0.147  Sum_probs=61.0

Q ss_pred             cccCceEEEEecCchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCC
Q 017490          174 TLLGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  251 (370)
Q Consensus       174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  251 (370)
                      .+...+|+|||.|.+|..+|..+...|.  ++..+|........   ...++.....  ...........+ .+.+..||
T Consensus        16 ~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g---~alDl~~~~~--~~~~~~~~~~~d-~~~~~~ad   89 (159)
T d2ldxa1          16 KLSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRG---EALDLQHGSL--FLSTPKIVFGKD-YNVSANSK   89 (159)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHH---HHHHHHHTTT--TCSCCEEEEESS-GGGGTTEE
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhc---cHHHHhCcch--hcCCCeEEeccc-hhhhcccc
Confidence            4556789999999999999999877665  89999987533110   0011110000  000000001123 34568999


Q ss_pred             EEEEecc--CCh-hhh-ccc--CHHH-------HhcCCCCcEEEEcCCC
Q 017490          252 VVVCCLS--LNK-QTA-GIV--NKSF-------LSSMKKGSLLVNIARG  287 (370)
Q Consensus       252 iV~l~lP--~t~-~t~-~li--~~~~-------l~~mk~gailIN~sRg  287 (370)
                      +|+++..  ..+ +++ .++  |.+.       +....|++++++++..
T Consensus        90 ivvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtNP  138 (159)
T d2ldxa1          90 LVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNP  138 (159)
T ss_dssp             EEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSSS
T ss_pred             EEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCCc
Confidence            9998753  222 222 122  2222       3345789999999763

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=92.70  E-value=0.017  Score=47.89  Aligned_cols=96  Identities=17%  Similarity=0.129  Sum_probs=60.7

Q ss_pred             cCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHH-----hc
Q 017490          176 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA-----SK  249 (370)
Q Consensus       176 ~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-----~~  249 (370)
                      +|.+|.|.|. |.+|+..++.++..|++|++..++.++.....        ..+ .+..+.. ......+.++     ..
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~--------~~G-a~~vi~~-~~~~~~~~~~~~~~~~G   98 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLK--------QIG-FDAAFNY-KTVNSLEEALKKASPDG   98 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH--------HTT-CSEEEET-TSCSCHHHHHHHHCTTC
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHH--------hhh-hhhhccc-ccccHHHHHHHHhhcCC
Confidence            5889999998 66999999999999999999987654311000        000 0011111 0112233332     34


Q ss_pred             CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCC
Q 017490          250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg  287 (370)
                      .|+|+-++.  .++    -.+.++.++++..++.++..
T Consensus        99 vd~v~D~vG--~~~----~~~~~~~l~~~G~~v~~G~~  130 (182)
T d1v3va2          99 YDCYFDNVG--GEF----LNTVLSQMKDFGKIAICGAI  130 (182)
T ss_dssp             EEEEEESSC--HHH----HHHHGGGEEEEEEEEECCCG
T ss_pred             CceeEEecC--chh----hhhhhhhccCCCeEEeecce
Confidence            799988875  222    14678889999999998754

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.69  E-value=0.07  Score=45.60  Aligned_cols=39  Identities=28%  Similarity=0.292  Sum_probs=35.0

Q ss_pred             ccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      ..-.+++|.|||.|..|...|..|+..|++|..+++...
T Consensus        45 ~~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          45 QTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK   83 (233)
T ss_dssp             CCSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cccCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence            445889999999999999999999999999999997653

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.65  E-value=0.072  Score=43.81  Aligned_cols=77  Identities=12%  Similarity=0.026  Sum_probs=42.3

Q ss_pred             ceEEEEecCchhH--HHHHHhcc---CC-CEEEEEcCCCcccc-ccccccchhhhcccccccc-cc-ccCCCCCHHHHHh
Q 017490          178 KTVFILGFGNIGV--ELAKRLRP---FG-VKIIATKRSWASHS-QVSCQSSALAVKNGIIDDL-VD-EKGCHEDIFEFAS  248 (370)
Q Consensus       178 ~tvGIiGlG~IG~--~vA~~l~~---~G-~~V~~~dr~~~~~~-~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~l~ell~  248 (370)
                      .+|.|||.|++|.  .++..++.   +. -++..+|.+..... ...+.......     .+. .. .....++..+.++
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~-----~~~~~~~~~~~~td~~~al~   76 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMV-----EKAGVPIEIHLTLDRRRALD   76 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHH-----HHTTCCCEEEEESCHHHHHT
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHH-----HhcCCCceeeecCCchhhcC
Confidence            4799999998874  44444432   32 38999998754310 00000000000     000 00 0012367888999


Q ss_pred             cCCEEEEeccC
Q 017490          249 KADVVVCCLSL  259 (370)
Q Consensus       249 ~aDiV~l~lP~  259 (370)
                      .||+|+++...
T Consensus        77 gaDvVv~ta~~   87 (169)
T d1s6ya1          77 GADFVTTQFRV   87 (169)
T ss_dssp             TCSEEEECCCT
T ss_pred             CCCEEEEcccc
Confidence            99999999864

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.61  E-value=0.057  Score=46.15  Aligned_cols=76  Identities=28%  Similarity=0.346  Sum_probs=49.0

Q ss_pred             ccCceEEEEe-cCchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCC
Q 017490          175 LLGKTVFILG-FGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  251 (370)
Q Consensus       175 l~g~tvGIiG-lG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  251 (370)
                      ..+++|.|.| .|.||+.+++.|...|.  +|++++|++.........     ..+    .........+++.+.++.+|
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~-----~i~----~~~~D~~~~~~~~~~~~~~d   82 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYK-----NVN----QEVVDFEKLDDYASAFQGHD   82 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGG-----GCE----EEECCGGGGGGGGGGGSSCS
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccc-----eee----eeeecccccccccccccccc
Confidence            5678999999 59999999999987774  899999875442111100     000    00000112345667788999


Q ss_pred             EEEEeccC
Q 017490          252 VVVCCLSL  259 (370)
Q Consensus       252 iV~l~lP~  259 (370)
                      +|+.++..
T Consensus        83 ~vi~~~~~   90 (232)
T d2bkaa1          83 VGFCCLGT   90 (232)
T ss_dssp             EEEECCCC
T ss_pred             cccccccc
Confidence            99887653

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=92.49  E-value=0.034  Score=50.33  Aligned_cols=36  Identities=28%  Similarity=0.397  Sum_probs=31.8

Q ss_pred             cCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          176 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       176 ~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      .||+|.|.|. |.||+.+++.|...|++|++..|+..
T Consensus        10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~   46 (342)
T d1y1pa1          10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSAS   46 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCch
Confidence            5999999995 88999999999999999999877643

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.41  E-value=0.04  Score=45.84  Aligned_cols=70  Identities=23%  Similarity=0.193  Sum_probs=42.6

Q ss_pred             ceEEEEe-cCchhHHHHHHhccCCCE--EEEEcCCCccccccccccchhhhcccccccccc-ccCCCCCHHHHHhcCCEE
Q 017490          178 KTVFILG-FGNIGVELAKRLRPFGVK--IIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVV  253 (370)
Q Consensus       178 ~tvGIiG-lG~IG~~vA~~l~~~G~~--V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV  253 (370)
                      +||.|.| .|.||+.+++.|...|.+  |+...|++.+....          .+. .+... ......++.++++.+|.|
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~----------~~~-~~~~~~d~~~~~~~~~~~~~~d~v   72 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI----------GGE-ADVFIGDITDADSINPAFQGIDAL   72 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHT----------TCC-TTEEECCTTSHHHHHHHHTTCSEE
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhc----------cCC-cEEEEeeeccccccccccccceee
Confidence            5899999 699999999999988865  55566654321000          000 00000 001223456778899998


Q ss_pred             EEecc
Q 017490          254 VCCLS  258 (370)
Q Consensus       254 ~l~lP  258 (370)
                      +.+..
T Consensus        73 i~~a~   77 (252)
T d2q46a1          73 VILTS   77 (252)
T ss_dssp             EECCC
T ss_pred             EEEEe
Confidence            87654

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=92.39  E-value=0.034  Score=48.23  Aligned_cols=68  Identities=12%  Similarity=0.122  Sum_probs=41.7

Q ss_pred             cCceEEEEecCchhHHH----HHHhcc--CCCEEE-EEcCCCccccccccccchhhhccccccccccccC-----CCCCH
Q 017490          176 LGKTVFILGFGNIGVEL----AKRLRP--FGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-----CHEDI  243 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~v----A~~l~~--~G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l  243 (370)
                      +-.+|||||+|.+|..+    ...++.  -+++|+ ++|++.....                 ....+++     .+.++
T Consensus        15 k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~-----------------~~~~~~~~~~~~~~~~~   77 (237)
T d2nvwa1          15 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSL-----------------QTIEQLQLKHATGFDSL   77 (237)
T ss_dssp             CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHH-----------------HHHHHTTCTTCEEESCH
T ss_pred             CCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHH-----------------HHHHhcccccceeecch
Confidence            33589999999865433    334443  367877 5787654311                 1111111     34689


Q ss_pred             HHHHh--cCCEEEEeccCC
Q 017490          244 FEFAS--KADVVVCCLSLN  260 (370)
Q Consensus       244 ~ell~--~aDiV~l~lP~t  260 (370)
                      ++++.  +-|+|++++|..
T Consensus        78 ~~l~~~~~iD~V~i~tp~~   96 (237)
T d2nvwa1          78 ESFAQYKDIDMIVVSVKVP   96 (237)
T ss_dssp             HHHHHCTTCSEEEECSCHH
T ss_pred             hhcccccccceeeccCCCc
Confidence            99986  578999998843

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=92.36  E-value=0.049  Score=47.28  Aligned_cols=39  Identities=26%  Similarity=0.354  Sum_probs=34.5

Q ss_pred             cccCceEEEEecCc-hhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          174 TLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       174 ~l~g~tvGIiGlG~-IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      .|.||++.|.|.+. ||+++|+.|...|++|++.+|+.+.
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~   41 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERL   41 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            48999999999754 9999999999999999999987643

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=92.34  E-value=0.067  Score=48.74  Aligned_cols=33  Identities=33%  Similarity=0.333  Sum_probs=28.5

Q ss_pred             ceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCC
Q 017490          178 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       178 ~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      |.|.|.| .|-||+.+++.|...|++|+++||..
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            5677889 79999999999999999999999854

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.32  E-value=0.16  Score=42.26  Aligned_cols=103  Identities=17%  Similarity=0.075  Sum_probs=63.3

Q ss_pred             cccCceEEEEec--CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHH
Q 017490          174 TLLGKTVFILGF--GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFA  247 (370)
Q Consensus       174 ~l~g~tvGIiGl--G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell  247 (370)
                      .|.|.+|++||=  -++..+++..+..||+++.+..|..-...... .  ..      +.......+    ...++++.+
T Consensus         2 ~l~~lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~-~--~~------~~~~~~~~~~~~~~~~d~~eai   72 (185)
T d1dxha2           2 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEF-V--AQ------CKKFAEESGAKLTLTEDPKEAV   72 (185)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHH-H--HH------HHHHHHHHTCEEEEESCHHHHT
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHH-H--HH------HHHHhhccCCeEEEEeChhhcc
Confidence            588999999994  48999999999999999999876321100000 0  00      000000011    236899999


Q ss_pred             hcCCEEEEeccCC----hh---------hhcccC-HHHHhcCCCCcEEEEcC
Q 017490          248 SKADVVVCCLSLN----KQ---------TAGIVN-KSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       248 ~~aDiV~l~lP~t----~~---------t~~li~-~~~l~~mk~gailIN~s  285 (370)
                      +.+|+|..-.=..    .+         ....++ ...++.+|+++++.-+.
T Consensus        73 ~~aDvVyt~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ak~~~i~MH~L  124 (185)
T d1dxha2          73 KGVDFVHTDVWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCL  124 (185)
T ss_dssp             TTCSEEEECCCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECS
T ss_pred             ccccEEEeehhhhhhhhhhhHHHHHHHhhhheeccHHHHhhcCCCEEEEcCC
Confidence            9999987754211    00         112333 33455678999998875

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=92.30  E-value=0.049  Score=47.82  Aligned_cols=39  Identities=28%  Similarity=0.371  Sum_probs=34.9

Q ss_pred             cccCceEEEEecC-chhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          174 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       174 ~l~g~tvGIiGlG-~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      +|+||++.|.|.+ .||+++|+.|...|++|+..+|+.++
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~   41 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEE   41 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            5899999999974 69999999999999999999987543

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=92.29  E-value=0.11  Score=41.96  Aligned_cols=97  Identities=20%  Similarity=0.183  Sum_probs=58.5

Q ss_pred             ccCceEEEEec---CchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHH
Q 017490          175 LLGKTVFILGF---GNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEF  246 (370)
Q Consensus       175 l~g~tvGIiGl---G~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~el  246 (370)
                      +.|.+|++||=   |++..+++..+..+|+ .+.+..+.....  +...           .......+    ...++++.
T Consensus         2 l~gl~i~~vGD~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~--~~~~-----------~~~~~~~~~~~~~~~d~~~a   68 (160)
T d1ekxa2           2 LDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAM--PQYI-----------LDMLDEKGIAWSLHSSIEEV   68 (160)
T ss_dssp             SSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCC--CHHH-----------HHHHHHTTCCEEECSCSTTT
T ss_pred             CCCCEEEEEcCCCccHHHHHHHHHHHHcCCCeEEeeccchhhh--hHHH-----------HHHHhhhccccccccCHHHH
Confidence            68999999995   5699999999999975 455554422111  0000           01111111    24688899


Q ss_pred             HhcCCEEEEeccCChh----------hhcccCHHHHhcCCCCcEEEEc
Q 017490          247 ASKADVVVCCLSLNKQ----------TAGIVNKSFLSSMKKGSLLVNI  284 (370)
Q Consensus       247 l~~aDiV~l~lP~t~~----------t~~li~~~~l~~mk~gailIN~  284 (370)
                      ++++|+|...--..+.          ....++.+.++.++++++|.-+
T Consensus        69 ~~~aDvvy~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~mHc  116 (160)
T d1ekxa2          69 MAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHP  116 (160)
T ss_dssp             GGGCSEEEECCCCGGGCCGGGGGGCSCSCCBCGGGGTTCCTTCEEECC
T ss_pred             hCcCceEEeecccccccchHHHHHHHHHhhccHHHHHhcCcceeeecC
Confidence            9999999865322111          1123356667777777777655

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.26  E-value=0.057  Score=47.35  Aligned_cols=41  Identities=24%  Similarity=0.426  Sum_probs=36.4

Q ss_pred             cccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          172 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       172 ~~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      +..++||++.|.|. +.||+++|+.|...|++|++.+|+..+
T Consensus         5 M~~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~   46 (257)
T d1xg5a_           5 MERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGN   46 (257)
T ss_dssp             CGGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            45699999999996 789999999999999999999987543

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=92.24  E-value=0.045  Score=47.45  Aligned_cols=37  Identities=22%  Similarity=0.349  Sum_probs=33.1

Q ss_pred             ccCceEEEEecCc---hhHHHHHHhccCCCEEEEEcCCCc
Q 017490          175 LLGKTVFILGFGN---IGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       175 l~g~tvGIiGlG~---IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      |+||++.|.|.+.   ||+++|+.|...|++|++.+++.+
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~   42 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK   42 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            7899999999764   999999999999999999988744

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=92.20  E-value=0.048  Score=48.20  Aligned_cols=37  Identities=32%  Similarity=0.453  Sum_probs=33.4

Q ss_pred             ccccCceEEEEecC---chhHHHHHHhccCCCEEEEEcCC
Q 017490          173 ETLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRS  209 (370)
Q Consensus       173 ~~l~g~tvGIiGlG---~IG~~vA~~l~~~G~~V~~~dr~  209 (370)
                      .+|+||++.|.|.+   .||+++|+.|...|++|+..++.
T Consensus         4 ~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~   43 (297)
T d1d7oa_           4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWV   43 (297)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            57999999999986   59999999999999999988764

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.02  E-value=0.057  Score=47.21  Aligned_cols=39  Identities=21%  Similarity=0.425  Sum_probs=34.9

Q ss_pred             cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      +|+||++.|.|. +.||+++|+.|...|++|++.+|+.++
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~   41 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEE   41 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            589999999997 569999999999999999999987543

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=91.96  E-value=0.026  Score=46.27  Aligned_cols=37  Identities=14%  Similarity=0.235  Sum_probs=31.7

Q ss_pred             cCceEEEEecC-chhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          176 LGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       176 ~g~tvGIiGlG-~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      .|.+|.|.|.| .+|...++.++..|++|++.+++..+
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k   65 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQK   65 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHH
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHH
Confidence            47899999655 59999999999999999999887543

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.94  E-value=0.047  Score=47.34  Aligned_cols=40  Identities=28%  Similarity=0.477  Sum_probs=35.5

Q ss_pred             ccccCceEEEEecC-chhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          173 ETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       173 ~~l~g~tvGIiGlG-~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      ..|.||++.|.|.+ .||+++|+.|...|++|++.+|+...
T Consensus         3 psl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~   43 (237)
T d1uzma1           3 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGA   43 (237)
T ss_dssp             CCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcch
Confidence            35899999999975 69999999999999999999987654

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.93  E-value=0.043  Score=48.31  Aligned_cols=39  Identities=36%  Similarity=0.547  Sum_probs=34.9

Q ss_pred             cccCceEEEEecC-chhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          174 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       174 ~l~g~tvGIiGlG-~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      -|+||++.|.|.+ .||+++|+.|...|++|+..+|+.+.
T Consensus        11 ~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~   50 (269)
T d1xu9a_          11 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKET   50 (269)
T ss_dssp             GGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            4999999999974 59999999999999999999997543

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=91.82  E-value=0.065  Score=46.64  Aligned_cols=38  Identities=29%  Similarity=0.257  Sum_probs=34.3

Q ss_pred             cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      +|+||++.|.|. +.||+++|+.|...|++|++.|++..
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~   40 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA   40 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            589999999997 56999999999999999999998754

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.79  E-value=0.043  Score=44.07  Aligned_cols=91  Identities=9%  Similarity=0.024  Sum_probs=50.1

Q ss_pred             ceEEEEec-CchhHHHHHHhccC---CCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEE
Q 017490          178 KTVFILGF-GNIGVELAKRLRPF---GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  253 (370)
Q Consensus       178 ~tvGIiGl-G~IG~~vA~~l~~~---G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  253 (370)
                      .+|||||. |.+|+++.+.|...   ..++..+..+........              .............+.+..+|++
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~--------------~~~~~~~~~~~~~~~~~~~d~v   68 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMG--------------FAESSLRVGDVDSFDFSSVGLA   68 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEE--------------ETTEEEECEEGGGCCGGGCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCccee--------------eccccchhccchhhhhccceEE
Confidence            57999996 99999999999533   335555432222111100              0000000001112346789999


Q ss_pred             EEeccCChhhhcccCHHHHhcCCCCcEEEEcCCC
Q 017490          254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       254 ~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg  287 (370)
                      +.++|...+ ..+. ..   ..+.|..+||.|.-
T Consensus        69 f~a~p~~~s-~~~~-~~---~~~~g~~VID~Ss~   97 (144)
T d2hjsa1          69 FFAAAAEVS-RAHA-ER---ARAAGCSVIDLSGA   97 (144)
T ss_dssp             EECSCHHHH-HHHH-HH---HHHTTCEEEETTCT
T ss_pred             EecCCcchh-hhhc-cc---cccCCceEEeechh
Confidence            999984332 2222 11   23578999998754

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=91.76  E-value=0.082  Score=45.57  Aligned_cols=33  Identities=30%  Similarity=0.472  Sum_probs=30.1

Q ss_pred             ceEEEEec-CchhHHHHHHhccCCCEEEEEcCCC
Q 017490          178 KTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       178 ~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      ++|.|.|. |-||+.+++.|...|++|++.||..
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            46899996 9999999999999999999999863

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.74  E-value=0.082  Score=47.53  Aligned_cols=39  Identities=18%  Similarity=0.287  Sum_probs=34.8

Q ss_pred             ccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          173 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       173 ~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      .+|.||++.|.|. +.||+++|+.|...|++|++.|+...
T Consensus         3 m~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~   42 (302)
T d1gz6a_           3 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGD   42 (302)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBC
T ss_pred             cCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch
Confidence            4689999999997 56999999999999999999998754

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=91.72  E-value=0.054  Score=46.10  Aligned_cols=33  Identities=27%  Similarity=0.352  Sum_probs=30.4

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCC
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      ++|.|||.|..|...|..|+..|++|++++++.
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSA   33 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            369999999999999999999999999999764

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.68  E-value=0.066  Score=46.14  Aligned_cols=37  Identities=24%  Similarity=0.307  Sum_probs=33.7

Q ss_pred             ccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          175 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       175 l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      |+||++.|.|. +.||+++|+.|...|++|++.+|+.+
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~   39 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEE   39 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            78999999997 66999999999999999999998753

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=91.59  E-value=0.068  Score=46.84  Aligned_cols=39  Identities=23%  Similarity=0.388  Sum_probs=34.8

Q ss_pred             cccCceEEEEecC-chhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          174 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       174 ~l~g~tvGIiGlG-~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      .|.||++.|.|.+ .||+++|+.|...|++|++.+|+.++
T Consensus         5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~   44 (259)
T d2ae2a_           5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKE   44 (259)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            6899999999974 69999999999999999999987543

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=91.49  E-value=0.084  Score=38.84  Aligned_cols=35  Identities=17%  Similarity=0.285  Sum_probs=30.5

Q ss_pred             ceEEEEecCchhH-HHHHHhccCCCEEEEEcCCCcc
Q 017490          178 KTVFILGFGNIGV-ELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       178 ~tvGIiGlG~IG~-~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      ++|=+||.|.+|- ++|+.|+..|++|.++|+...+
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~   37 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETE   37 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCH
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCCh
Confidence            5788999999996 7899999999999999987543

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=91.46  E-value=0.07  Score=46.88  Aligned_cols=39  Identities=28%  Similarity=0.360  Sum_probs=34.6

Q ss_pred             cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      +|+||++.|.|. +.||+++|+.|...|++|++.||+...
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~   42 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDH   42 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            589999999996 569999999999999999999987543

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=91.40  E-value=0.065  Score=48.14  Aligned_cols=38  Identities=26%  Similarity=0.325  Sum_probs=33.9

Q ss_pred             ccCceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          175 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       175 l~g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      .+||+|.|.| .|-||+.+++.|...|++|++++|...+
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~   44 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPT   44 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSS
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence            3689999999 6999999999999999999999987553

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=91.35  E-value=0.075  Score=47.86  Aligned_cols=35  Identities=20%  Similarity=0.324  Sum_probs=32.2

Q ss_pred             CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      .|+|.|||.|..|...|..|+..|.+|++++.+..
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~   36 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            58999999999999999999999999999997653

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=91.26  E-value=0.2  Score=43.80  Aligned_cols=97  Identities=12%  Similarity=0.042  Sum_probs=58.5

Q ss_pred             cccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEE
Q 017490          174 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  253 (370)
Q Consensus       174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  253 (370)
                      ...|++|++||+-    +..++++..|+++.++|++++....+                       ...-++++++||+|
T Consensus       119 ~~~g~kV~vIG~~----P~v~~l~~~~~~~~VlE~~p~~gd~p-----------------------~~~~~~lLp~aD~v  171 (251)
T d2h1qa1         119 EVKGKKVGVVGHF----PHLESLLEPICDLSILEWSPEEGDYP-----------------------LPASEFILPECDYV  171 (251)
T ss_dssp             TTTTSEEEEESCC----TTHHHHHTTTSEEEEEESSCCTTCEE-----------------------GGGHHHHGGGCSEE
T ss_pred             ccCCCEEEEEecc----hhHHHHHhcCCcEEEEeCCCCCCCCC-----------------------chHHHHhhhcCCEE
Confidence            3479999999874    45666777889999999986542110                       12345677788877


Q ss_pred             EEeccCChhhhcccC---HHHHhcCCCCcEEEEcCCCc------------------ccCHHHHHHHHHhCC
Q 017490          254 VCCLSLNKQTAGIVN---KSFLSSMKKGSLLVNIARGG------------------LLDYEAIAHYLECGH  303 (370)
Q Consensus       254 ~l~lP~t~~t~~li~---~~~l~~mk~gailIN~sRg~------------------~vd~~aL~~aL~~g~  303 (370)
                      ++.--    |  ++|   ...|++.|+...+|=+|=..                  +.|.+.+.+.+.+|.
T Consensus       172 iiTGs----T--lvN~Tl~~LL~~~~~a~~vvl~GPS~p~~P~lf~~Gv~~lag~~v~d~~~~~~~i~~Gg  236 (251)
T d2h1qa1         172 YITCA----S--VVDKTLPRLLELSRNARRITLVGPGTPLAPVLFEHGLQELSGFMVKDNARAFRIVAGAE  236 (251)
T ss_dssp             EEETH----H--HHHTCHHHHHHHTTTSSEEEEESTTCCCCGGGGGTTCSEEEEEEESCHHHHHHHHTTSS
T ss_pred             EEEec----h--hhcCCHHHHHHhCCcCCEEEEECCCcccCHHHHhcCCceEeEEEEeCHHHHHHHHHcCC
Confidence            77521    1  222   23556566665554443211                  356666666666653

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=91.24  E-value=0.52  Score=38.75  Aligned_cols=101  Identities=18%  Similarity=0.220  Sum_probs=53.3

Q ss_pred             CceEEEEec-CchhHHHHHHhccC-CCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEE
Q 017490          177 GKTVFILGF-GNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  254 (370)
Q Consensus       177 g~tvGIiGl-G~IG~~vA~~l~~~-G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  254 (370)
                      ..+|||+|. |..|+++.+.|... .+++..............+    . +++..   ...........++.+..+|+|+
T Consensus         5 kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~----~-~~~~~---~~~~~~~~~~~~~~~~~~Dvvf   76 (183)
T d2cvoa1           5 EVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGS----V-FPHLI---TQDLPNLVAVKDADFSNVDAVF   76 (183)
T ss_dssp             CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHH----H-CGGGT---TSCCCCCBCGGGCCGGGCSEEE
T ss_pred             ccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCcccc----c-ccccc---ccccccchhhhhhhhcccceee
Confidence            457999995 99999999999864 4465544322111111000    0 00000   0000001123345578999999


Q ss_pred             EeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccC
Q 017490          255 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLD  291 (370)
Q Consensus       255 l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd  291 (370)
                      +++|....      .+....+.....+|+.+.+.-..
T Consensus        77 ~alp~~~s------~~~~~~l~~~~~~v~~~~~~~~~  107 (183)
T d2cvoa1          77 CCLPHGTT------QEIIKGLPQELKIVDLSADFRLR  107 (183)
T ss_dssp             ECCSSSHH------HHHHHTSCSSCEEEECSSTTTCS
T ss_pred             eccccchH------HHHHHHHHhcCcccccchhhhcc
Confidence            99996533      23334455555556655554433

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=91.02  E-value=0.16  Score=44.20  Aligned_cols=38  Identities=18%  Similarity=0.197  Sum_probs=32.8

Q ss_pred             cccCceEEEEecC-chhHHHHHHhccCCCEEEEEcCCCc
Q 017490          174 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       174 ~l~g~tvGIiGlG-~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      +|+||++.|.|.+ .||+++|+.+...|++|++..|+.+
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~   40 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVE   40 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSC
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            5899999999975 6999999999999999887766543

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=91.01  E-value=0.35  Score=38.93  Aligned_cols=38  Identities=24%  Similarity=0.359  Sum_probs=32.6

Q ss_pred             ccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCcc
Q 017490          175 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  212 (370)
Q Consensus       175 l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~  212 (370)
                      -.|.+|.|+|.|.+|...+..++..|. +|++.|++..+
T Consensus        27 k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~r   65 (175)
T d1cdoa2          27 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDK   65 (175)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHH
Confidence            468899999999999999999988777 79999987654

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.01  E-value=0.063  Score=46.67  Aligned_cols=39  Identities=28%  Similarity=0.299  Sum_probs=34.6

Q ss_pred             cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      .|+||++.|.|. +.||+++|+.|...|++|++.+|+..+
T Consensus         3 ~l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~   42 (245)
T d2ag5a1           3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESK   42 (245)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            389999988885 899999999999999999999987543

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.00  E-value=0.055  Score=47.75  Aligned_cols=39  Identities=31%  Similarity=0.293  Sum_probs=34.9

Q ss_pred             cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      +|+||++.|.|. +.||+++|+.|...|++|+..+|+.++
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~   41 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSER   41 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            589999999996 679999999999999999999987543

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=90.98  E-value=0.057  Score=45.43  Aligned_cols=37  Identities=30%  Similarity=0.452  Sum_probs=32.6

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCcc
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  212 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~  212 (370)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.|+++.+
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~r   62 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPAR   62 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchh
Confidence            57899999999999999999998888 79999987654

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=90.86  E-value=0.18  Score=41.37  Aligned_cols=75  Identities=15%  Similarity=0.072  Sum_probs=42.7

Q ss_pred             CceEEEEecCchhHHHH--HHhc---cC-CCEEEEEcCCCccccc-cccccchhhhcccccccccc--ccCCCCCHHHHH
Q 017490          177 GKTVFILGFGNIGVELA--KRLR---PF-GVKIIATKRSWASHSQ-VSCQSSALAVKNGIIDDLVD--EKGCHEDIFEFA  247 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA--~~l~---~~-G~~V~~~dr~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell  247 (370)
                      ..+|.|||.|.+|...+  ..++   .+ +-++..+|.+.++... ..... .+.      .....  ......+.++.+
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~d~~eal   75 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACD-VFI------REKAPDIEFAATTDPEEAF   75 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHH-HHH------HHHCTTSEEEEESCHHHHH
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHH-HHH------HHhCCCcceEecCChhhcc
Confidence            45799999999986532  3332   22 2379999987654210 00000 000      00000  001236888999


Q ss_pred             hcCCEEEEecc
Q 017490          248 SKADVVVCCLS  258 (370)
Q Consensus       248 ~~aDiV~l~lP  258 (370)
                      +.||+|+++.-
T Consensus        76 ~~AD~Vvitag   86 (167)
T d1u8xx1          76 TDVDFVMAHIR   86 (167)
T ss_dssp             SSCSEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            99999999964

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=90.85  E-value=0.078  Score=46.87  Aligned_cols=39  Identities=28%  Similarity=0.398  Sum_probs=35.1

Q ss_pred             cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      .|+||++.|.|. +.||+++|+.|...|++|+..+|+.++
T Consensus         2 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~   41 (276)
T d1bdba_           2 KLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAER   41 (276)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            489999999996 799999999999999999999987543

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=90.80  E-value=0.056  Score=47.59  Aligned_cols=40  Identities=30%  Similarity=0.384  Sum_probs=35.4

Q ss_pred             cccccCceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          172 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       172 ~~~l~g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      ...|+||++.|.| -+.||+++|+.|...|++|++.+++..
T Consensus        13 ~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~   53 (272)
T d1g0oa_          13 SASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANST   53 (272)
T ss_dssp             GGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             CcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch
Confidence            4569999999999 589999999999999999999887643

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=90.72  E-value=0.089  Score=46.06  Aligned_cols=39  Identities=26%  Similarity=0.278  Sum_probs=34.4

Q ss_pred             cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      +|+||++.|.|. +.||+++|+.|...|++|+..+|+.+.
T Consensus         1 rl~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~   40 (258)
T d1iy8a_           1 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEG   40 (258)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            478999999997 569999999999999999999987543

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=90.70  E-value=0.058  Score=47.17  Aligned_cols=37  Identities=27%  Similarity=0.368  Sum_probs=31.9

Q ss_pred             ccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCC
Q 017490          173 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRS  209 (370)
Q Consensus       173 ~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~  209 (370)
                      +.|.||++.|.|. +.||+++|+.|...|++|++.+++
T Consensus         2 ~~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~   39 (259)
T d1ja9a_           2 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGS   39 (259)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCC
Confidence            5799999999996 569999999999999999875443

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.59  E-value=0.067  Score=46.94  Aligned_cols=40  Identities=28%  Similarity=0.326  Sum_probs=35.2

Q ss_pred             ccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          173 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       173 ~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      ..|+||++.|.|. +.||+++|+.|...|++|+..+|+..+
T Consensus         4 F~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~   44 (259)
T d1xq1a_           4 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYE   44 (259)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            3689999999997 569999999999999999999987543

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.54  E-value=0.13  Score=42.39  Aligned_cols=109  Identities=17%  Similarity=0.232  Sum_probs=58.4

Q ss_pred             ceEEEEe-cCchhHHHHHHhccC-CCEEEEEcCC--Cccccccccccchhhhcccccccccccc-CCCCCHHHHHhcCCE
Q 017490          178 KTVFILG-FGNIGVELAKRLRPF-GVKIIATKRS--WASHSQVSCQSSALAVKNGIIDDLVDEK-GCHEDIFEFASKADV  252 (370)
Q Consensus       178 ~tvGIiG-lG~IG~~vA~~l~~~-G~~V~~~dr~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ell~~aDi  252 (370)
                      .+|||+| .|.+|+++.+.|... .+++......  ....-+...   +....   ........ ....+.+.....+|+
T Consensus         2 ikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~dv   75 (179)
T d2g17a1           2 LNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLIS---DLHPQ---LKGIVDLPLQPMSDVRDFSADVDV   75 (179)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHH---HHCGG---GTTTCCCBEEEESCGGGTCTTCCE
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCCceEeeEeeccccccccccc---ccccc---cccccccccccchhhhhhhcccce
Confidence            4799999 699999999999876 6676544211  111000000   00000   00000000 011344455678999


Q ss_pred             EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 017490          253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAH  297 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~  297 (370)
                      +++++|.....+ +    .-...+.|..+|+.|..--.+....++
T Consensus        76 vf~alp~~~s~~-~----~~~~~~~~~~vIDlSadfRl~~~~~~~  115 (179)
T d2g17a1          76 VFLATAHEVSHD-L----APQFLQAGCVVFDLSGAFRVNDRAFYE  115 (179)
T ss_dssp             EEECSCHHHHHH-H----HHHHHHTTCEEEECSSTTSSSCHHHHH
T ss_pred             eeccccchhHHH-H----hhhhhhcCceeeccccccccccccccc
Confidence            999999543222 1    112245789999998766555444443

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=90.50  E-value=0.073  Score=46.54  Aligned_cols=36  Identities=28%  Similarity=0.374  Sum_probs=32.4

Q ss_pred             ccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCC
Q 017490          175 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       175 l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      |+||++.|.|. +.||+++|+.|...|++|++.+|+.
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~   38 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            78999999887 5599999999999999999999874

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.46  E-value=0.081  Score=41.59  Aligned_cols=31  Identities=23%  Similarity=0.418  Sum_probs=25.8

Q ss_pred             ceEEEEec-CchhHHHHHHhccCCCEEEE-EcC
Q 017490          178 KTVFILGF-GNIGVELAKRLRPFGVKIIA-TKR  208 (370)
Q Consensus       178 ~tvGIiGl-G~IG~~vA~~l~~~G~~V~~-~dr  208 (370)
                      .+|||+|+ |+||+.+++.+...|+++.+ +|+
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~   33 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDV   33 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEET
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECC
Confidence            37999996 99999999999988998764 443

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=90.45  E-value=0.094  Score=45.67  Aligned_cols=39  Identities=21%  Similarity=0.250  Sum_probs=34.7

Q ss_pred             cccCceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          174 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       174 ~l~g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      .|+||++.|.| -+.||+++|+.|...|++|++.+++.+.
T Consensus         2 ~l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~   41 (248)
T d2d1ya1           2 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG   41 (248)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            37899999999 5789999999999999999999987543

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=90.39  E-value=0.075  Score=46.44  Aligned_cols=39  Identities=26%  Similarity=0.325  Sum_probs=34.9

Q ss_pred             cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      .|+||++.|.|. +.||+++|+.|...|++|++.+|+.+.
T Consensus         2 ~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~   41 (256)
T d1k2wa_           2 RLDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEA   41 (256)
T ss_dssp             TTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            489999999997 789999999999999999999987543

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=90.30  E-value=0.046  Score=44.28  Aligned_cols=92  Identities=17%  Similarity=0.157  Sum_probs=52.0

Q ss_pred             CceEEEEec-CchhHHHHHHhccCCC---EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCE
Q 017490          177 GKTVFILGF-GNIGVELAKRLRPFGV---KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  252 (370)
Q Consensus       177 g~tvGIiGl-G~IG~~vA~~l~~~G~---~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  252 (370)
                      |-+|||||. |.+|+++.+.|....+   ++..+..+........              ............++...++|+
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~--------------~~~~~~~~~~~~~~~~~~~d~   66 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLK--------------FKDQDITIEETTETAFEGVDI   66 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEE--------------ETTEEEEEEECCTTTTTTCSE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccccccccccc--------------ccCCcccccccchhhhhhhhh
Confidence            568999997 9999999999976644   4444432211110000              000000011123345678999


Q ss_pred             EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCC
Q 017490          253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg  287 (370)
                      +++++|.... ..+    .....+.|..+|+.|.-
T Consensus        67 ~f~~~~~~~s-~~~----~~~~~~~~~~VIDlSsd   96 (154)
T d2gz1a1          67 ALFSAGSSTS-AKY----APYAVKAGVVVVDNTSY   96 (154)
T ss_dssp             EEECSCHHHH-HHH----HHHHHHTTCEEEECSST
T ss_pred             hhhccCccch-hhH----HhhhccccceehhcChh
Confidence            9999984332 222    12234679999998843

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=90.30  E-value=0.079  Score=46.27  Aligned_cols=39  Identities=28%  Similarity=0.360  Sum_probs=34.5

Q ss_pred             cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      +|+||++.|.|. +.||+++|+.|...|++|+..+++.+.
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~   42 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAA   42 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            589999999996 569999999999999999999987543

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=90.26  E-value=0.056  Score=44.34  Aligned_cols=34  Identities=29%  Similarity=0.316  Sum_probs=25.9

Q ss_pred             CceEEEEec-CchhHHHHHHhcc-CCCEEE-EEcCCC
Q 017490          177 GKTVFILGF-GNIGVELAKRLRP-FGVKII-ATKRSW  210 (370)
Q Consensus       177 g~tvGIiGl-G~IG~~vA~~l~~-~G~~V~-~~dr~~  210 (370)
                      ..+|+|+|+ |+||+.+++.+.. -++++. ++++..
T Consensus         4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~   40 (162)
T d1diha1           4 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREG   40 (162)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEeccc
Confidence            357999995 9999999998764 578864 556543

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.12  E-value=0.1  Score=46.72  Aligned_cols=39  Identities=23%  Similarity=0.411  Sum_probs=34.9

Q ss_pred             cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      .|+||++.|.|. +.||+++|+.|...|++|++.+|+.++
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~   48 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLER   48 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            499999999996 569999999999999999999987543

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.11  E-value=0.12  Score=44.37  Aligned_cols=34  Identities=26%  Similarity=0.453  Sum_probs=30.9

Q ss_pred             CceEEEEecCchhHHHHHHhccCCCEEEEEcCCC
Q 017490          177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      -++|.|||.|.-|-..|..|+..|++|++++.+.
T Consensus         5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~   38 (449)
T d2dw4a2           5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD   38 (449)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            4579999999999999999999999999998754

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=90.06  E-value=0.074  Score=46.76  Aligned_cols=39  Identities=31%  Similarity=0.387  Sum_probs=34.9

Q ss_pred             ccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          173 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       173 ~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      ++|+||++.|.|. +.||+++|+.|...|++|++.+|+..
T Consensus         3 ~dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~   42 (261)
T d1geea_           3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKE   42 (261)
T ss_dssp             GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcH
Confidence            5799999999995 78999999999999999999998753

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=89.93  E-value=0.076  Score=46.89  Aligned_cols=39  Identities=28%  Similarity=0.323  Sum_probs=34.5

Q ss_pred             cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      +|+||++.|.|. +.||+++|+.|...|++|++.+|+.++
T Consensus         1 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~   40 (274)
T d1xhla_           1 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDR   40 (274)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            478999999997 569999999999999999999987543

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.85  E-value=0.2  Score=45.10  Aligned_cols=37  Identities=27%  Similarity=0.277  Sum_probs=32.6

Q ss_pred             cCceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          176 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       176 ~g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      .+++|.|.| .|-||+.+++.|...|.+|+++|+....
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~   51 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNE   51 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCcc
Confidence            678899999 6999999999999999999999875443

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=89.82  E-value=0.096  Score=43.06  Aligned_cols=32  Identities=28%  Similarity=0.486  Sum_probs=29.1

Q ss_pred             eEEEEecCchhHHHHHHhccCCC-EEEEEcCCC
Q 017490          179 TVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  210 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~  210 (370)
                      +|.|||.|..|...|..|+..|+ +|++++++.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            58999999999999999999997 699999764

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.60  E-value=0.091  Score=43.50  Aligned_cols=40  Identities=23%  Similarity=0.186  Sum_probs=34.7

Q ss_pred             ccccCceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          173 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       173 ~~l~g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      ....|.+|.|.| .|.+|....+.++.+|++|++..++.++
T Consensus        28 ~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k   68 (176)
T d1xa0a2          28 LTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAE   68 (176)
T ss_dssp             CCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTC
T ss_pred             CCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHH
Confidence            445689999999 5999999999999999999998876554

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.54  E-value=0.15  Score=43.77  Aligned_cols=37  Identities=14%  Similarity=0.171  Sum_probs=32.6

Q ss_pred             cCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          176 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       176 ~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      .||+|.|.|. |.||+++|+.|...|++|...|+....
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~   38 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENE   38 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            4899999997 679999999999999999999876543

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=89.51  E-value=0.086  Score=45.93  Aligned_cols=39  Identities=31%  Similarity=0.367  Sum_probs=34.6

Q ss_pred             cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      +|+||++.|.|. +.||+++|+.|...|++|+..+|+.+.
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~   42 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDV   42 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            489999999995 679999999999999999999987543

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=89.48  E-value=0.14  Score=44.46  Aligned_cols=40  Identities=28%  Similarity=0.238  Sum_probs=35.2

Q ss_pred             ccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          173 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       173 ~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      ..|.||++.|.|. +.||+++|+.|...|++|+.++|+.+.
T Consensus         6 f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~   46 (251)
T d2c07a1           6 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKS   46 (251)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence            4588999999997 679999999999999999999987543

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=89.47  E-value=0.095  Score=45.81  Aligned_cols=39  Identities=26%  Similarity=0.373  Sum_probs=34.8

Q ss_pred             cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      .|+||++.|.|. +.||+++|+.|...|++|+..+|+.++
T Consensus         8 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~   47 (255)
T d1fmca_           8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADA   47 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            589999999996 679999999999999999999987543

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=89.30  E-value=0.091  Score=46.02  Aligned_cols=39  Identities=26%  Similarity=0.237  Sum_probs=34.8

Q ss_pred             cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      +|+||++.|.|. +.||+++|+.|...|++|+..+|+.++
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~   41 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAER   41 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            489999999995 789999999999999999999987543

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=89.25  E-value=0.18  Score=40.01  Aligned_cols=38  Identities=24%  Similarity=0.279  Sum_probs=32.6

Q ss_pred             ccccCceEEEE--ecCchhHHHHHHhccCCCEEEEEcCCC
Q 017490          173 ETLLGKTVFIL--GFGNIGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       173 ~~l~g~tvGIi--GlG~IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      +...++.+.|+  |-|.||-++|..|+.+|++|..+.+..
T Consensus        35 ~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~   74 (156)
T d1djqa2          35 KKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH   74 (156)
T ss_dssp             CSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             ccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCC
Confidence            44557778777  889999999999999999999998764

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.03  E-value=0.12  Score=42.29  Aligned_cols=31  Identities=26%  Similarity=0.278  Sum_probs=29.3

Q ss_pred             EEEEecCchhHHHHHHhccCCCEEEEEcCCC
Q 017490          180 VFILGFGNIGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       180 vGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      |.|||.|..|...|..|+..|.+|++++++.
T Consensus         8 viViGaG~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            7899999999999999999999999999864

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.99  E-value=0.047  Score=45.43  Aligned_cols=92  Identities=14%  Similarity=0.164  Sum_probs=57.6

Q ss_pred             cCceEEEEe-cCchhHHHHHHhccCCCE-EEEEcCCCccccccccccchhhhcccccccc-ccccC--CCCCHHHHHhc-
Q 017490          176 LGKTVFILG-FGNIGVELAKRLRPFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDL-VDEKG--CHEDIFEFASK-  249 (370)
Q Consensus       176 ~g~tvGIiG-lG~IG~~vA~~l~~~G~~-V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~l~ell~~-  249 (370)
                      .+.+|.|.| .|.+|...++.++.+|++ |++.+.+.++.....             .++ .+...  ..+++.+.+++ 
T Consensus        30 ~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~-------------~~~gad~vi~~~~~~~~~~~~~~   96 (187)
T d1vj1a2          30 SNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLT-------------SELGFDAAVNYKTGNVAEQLREA   96 (187)
T ss_dssp             SCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHH-------------HHSCCSEEEETTSSCHHHHHHHH
T ss_pred             CCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhh-------------hcccceEEeeccchhHHHHHHHH
Confidence            357899999 599999999999999996 555555432210000             000 11111  23456666555 


Q ss_pred             ----CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490          250 ----ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  286 (370)
Q Consensus       250 ----aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR  286 (370)
                          .|+|+-++..  ++    -...++.++++..++.++.
T Consensus        97 ~~~GvDvv~D~vGg--~~----~~~~~~~l~~~G~iv~~G~  131 (187)
T d1vj1a2          97 CPGGVDVYFDNVGG--DI----SNTVISQMNENSHIILCGQ  131 (187)
T ss_dssp             CTTCEEEEEESSCH--HH----HHHHHTTEEEEEEEEEC--
T ss_pred             hccCceEEEecCCc--hh----HHHHhhhccccccEEEecc
Confidence                8999888751  21    2467888999999998864

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=88.78  E-value=0.16  Score=45.40  Aligned_cols=34  Identities=24%  Similarity=0.220  Sum_probs=28.9

Q ss_pred             ceEEEEecCchhHHHHHHhccC--CCEEEEEcCCCc
Q 017490          178 KTVFILGFGNIGVELAKRLRPF--GVKIIATKRSWA  211 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~--G~~V~~~dr~~~  211 (370)
                      |+|+|||.|..|..+|..|+..  +.+|.+++++..
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            6899999999999999988654  469999998743

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.62  E-value=0.16  Score=45.05  Aligned_cols=33  Identities=24%  Similarity=0.414  Sum_probs=29.5

Q ss_pred             ceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCC
Q 017490          178 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       178 ~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      |+|.|.| .|-||+.+++.|...|++|+++|+..
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~   35 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFF   35 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCC
Confidence            6899999 59999999999999999999998743

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=88.57  E-value=0.14  Score=38.86  Aligned_cols=34  Identities=24%  Similarity=0.245  Sum_probs=28.5

Q ss_pred             ceEEEEecCchhHHHHHH---hccCCCEEEEEcCCCc
Q 017490          178 KTVFILGFGNIGVELAKR---LRPFGVKIIATKRSWA  211 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~---l~~~G~~V~~~dr~~~  211 (370)
                      +++.|||.|.+|-++|..   ++..|.+|..+.+.+.
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~   55 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDM   55 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred             CeEEEECCChHHHHHHHHhHhhcccccccceeccccc
Confidence            789999999999999975   4456999999987643

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=88.43  E-value=0.18  Score=37.80  Aligned_cols=40  Identities=20%  Similarity=0.296  Sum_probs=33.0

Q ss_pred             CcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCC
Q 017490          171 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       171 ~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      ...+.+||+|+|||.|.-|..+|.-+...+.+|+...++.
T Consensus        26 ~~~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          26 EPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             CGGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             chhhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            3567899999999999999999999988887766554443

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.43  E-value=0.19  Score=42.17  Aligned_cols=33  Identities=15%  Similarity=0.212  Sum_probs=29.1

Q ss_pred             eEEEEecCchhHHHHHHhc--cCCCEEEEEcCCCc
Q 017490          179 TVFILGFGNIGVELAKRLR--PFGVKIIATKRSWA  211 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~--~~G~~V~~~dr~~~  211 (370)
                      +|+|||.|..|...|..|+  .+|++|.+||+.+.
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            7999999999999999874  47899999998754

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.36  E-value=0.1  Score=45.44  Aligned_cols=33  Identities=27%  Similarity=0.390  Sum_probs=30.6

Q ss_pred             eEEEEecCchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      .|.|||.|..|..+|..|+..|.+|.++++.+.
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            589999999999999999999999999998753

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.24  E-value=0.16  Score=44.68  Aligned_cols=34  Identities=24%  Similarity=0.303  Sum_probs=30.4

Q ss_pred             ceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          178 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       178 ~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      |+|.|.| .|-||+.+++.|...|++|++++|...
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~   35 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS   35 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence            6889999 599999999999989999999998654

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=88.17  E-value=0.099  Score=43.17  Aligned_cols=30  Identities=27%  Similarity=0.479  Sum_probs=26.7

Q ss_pred             eEEEEecCchhHHHHHHhccCCCEEEEEcC
Q 017490          179 TVFILGFGNIGVELAKRLRPFGVKIIATKR  208 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr  208 (370)
                      +|||=|+|+||+.+.|.+...+.+|.+.+.
T Consensus         2 kIgINGfGRIGR~~~R~~~~~~~~ivaINd   31 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAALEMGAQVVAVND   31 (169)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEEC
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEECC
Confidence            799999999999999998877888888764

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.14  E-value=0.18  Score=43.80  Aligned_cols=38  Identities=24%  Similarity=0.328  Sum_probs=33.4

Q ss_pred             ccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          175 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       175 l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      +.||++.|.|. +.||+++|+.|...|++|+..+|+.++
T Consensus         1 i~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~   39 (254)
T d2gdza1           1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEA   39 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            46999999997 669999999999999999999987543

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=88.12  E-value=0.14  Score=43.93  Aligned_cols=32  Identities=19%  Similarity=0.144  Sum_probs=29.7

Q ss_pred             eEEEEecCchhHHHHHHhccCCCEEEEEcCCC
Q 017490          179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      -|.|||.|-+|..+|..|...|.+|+++|+..
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            48999999999999999999999999999864

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=88.10  E-value=0.15  Score=45.86  Aligned_cols=37  Identities=24%  Similarity=0.328  Sum_probs=32.7

Q ss_pred             cCceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          176 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       176 ~g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      +-|||.|+| .|.||+.+++.|.+.|++|.+..|+..+
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~   39 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKG   39 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcch
Confidence            358999999 5999999999999999999999887654

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=88.00  E-value=0.11  Score=42.86  Aligned_cols=111  Identities=21%  Similarity=0.160  Sum_probs=61.5

Q ss_pred             eEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHH-HHHhcCCEEEEec
Q 017490          179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIF-EFASKADVVVCCL  257 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-ell~~aDiV~l~l  257 (370)
                      +|||=|+|+||+.+.|.+..-+.+|.+.+......        .+.|.-     ..++..  ..++ ++-...|.+++  
T Consensus         2 kigINGfGRIGR~~~R~l~~~~i~iv~INd~~~~~--------~~ayLl-----~yDS~h--G~~~~~v~~~~~~l~i--   64 (168)
T d2g82a1           2 KVGINGFGRIGRQVFRILHSRGVEVALINDLTDNK--------TLAHLL-----KYDSIY--HRFPGEVAYDDQYLYV--   64 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEEECSSCHH--------HHHHHH-----HCCTTT--CSCSSCEEECSSEEEE--
T ss_pred             EEEEECCcHHHHHHHHHHhcCCCEEEEECCCcchh--------hhhhee-----eccccc--CccccccccccceeEe--
Confidence            79999999999999999887789998887532110        011100     001110  0111 11123344443  


Q ss_pred             cCChhhhccc---CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEE
Q 017490          258 SLNKQTAGIV---NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGI  309 (370)
Q Consensus       258 P~t~~t~~li---~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~l  309 (370)
                        +...-.+.   +.+.+..-+-|.-+|=-+.|.-.+.+.+...|+.|- ....+
T Consensus        65 --~g~~I~~~~~~~p~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~ga-kkVii  116 (168)
T d2g82a1          65 --DGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGA-KKVII  116 (168)
T ss_dssp             --TTEEEEEECCSSGGGCCTGGGTEEEEEECSSSCCBHHHHTHHHHTTC-SEEEE
T ss_pred             --cceeEEEEecCChHHCcccccCCceeEeccccccchHHhhhhhcccc-ceeee
Confidence              11111222   223333334466666677899899999999998763 33444

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.70  E-value=0.42  Score=39.47  Aligned_cols=33  Identities=33%  Similarity=0.400  Sum_probs=27.9

Q ss_pred             ceEEEEec-CchhHHHHHHhccCCC--EEEEEcCCC
Q 017490          178 KTVFILGF-GNIGVELAKRLRPFGV--KIIATKRSW  210 (370)
Q Consensus       178 ~tvGIiGl-G~IG~~vA~~l~~~G~--~V~~~dr~~  210 (370)
                      |+|.|+|. |.||+.+++.|...|.  +|+...|++
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~   38 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKA   38 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCc
Confidence            79999997 9999999999988887  677666553

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=87.64  E-value=0.88  Score=40.72  Aligned_cols=123  Identities=11%  Similarity=0.140  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEecCchhHHHHHHhccC----CC-------EEEEEcC
Q 017490          140 CAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPF----GV-------KIIATKR  208 (370)
Q Consensus       140 vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~----G~-------~V~~~dr  208 (370)
                      +|=-+++.+++.+|-.                ++.|...++.|.|.|.-|..+|+.+...    |+       +++.+|+
T Consensus         4 Ta~V~lAglinAlki~----------------gk~l~d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~   67 (308)
T d1o0sa1           4 TASVIVAGLLTCTRVT----------------KKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDI   67 (308)
T ss_dssp             HHHHHHHHHHHHHHHH----------------CCCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEET
T ss_pred             HHHHHHHHHHHHHHHh----------------CCCHHHcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeC
Confidence            4556677777777642                5678999999999999999998887543    32       4899987


Q ss_pred             CCccccccccccchhhhccccccccccccCCCCCHHHHHhc--CCEEEEeccCChhhhcccCHHHHhcC---CCCcEEEE
Q 017490          209 SWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK--ADVVVCCLSLNKQTAGIVNKSFLSSM---KKGSLLVN  283 (370)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~l~lP~t~~t~~li~~~~l~~m---k~gailIN  283 (370)
                      ..--...-.+. ..+.      ..+........++.++++.  .++++-+-    ...++++++.++.|   .+..++.=
T Consensus        68 ~Glv~~~r~d~-~~~k------~~~a~~~~~~~~l~~~i~~~kptvliG~s----~~~g~ft~evv~~Ma~~~~~PIIFa  136 (308)
T d1o0sa1          68 DGLVTKNRKEM-NPRH------VQFAKDMPETTSILEVIRAARPGALIGAS----TVRGAFNEEVIRAMAEINERPIIFA  136 (308)
T ss_dssp             TEECBTTCSSC-CGGG------TTTCBSSCCCCCHHHHHHHHCCSEEEECS----SCTTCSCHHHHHHHHHHCSSCEEEE
T ss_pred             CCCccCCCccc-CHHH------HHHHHhcccCCcHHHHHhccccccEEecc----cccCCCCHHHHHHHHhhCCCcEEEE
Confidence            54211000000 0000      1122222233567777763  36665542    23567888877655   48889999


Q ss_pred             cCCCcc
Q 017490          284 IARGGL  289 (370)
Q Consensus       284 ~sRg~~  289 (370)
                      .|....
T Consensus       137 LSNPtp  142 (308)
T d1o0sa1         137 LSNPTS  142 (308)
T ss_dssp             CCSSGG
T ss_pred             ccCCCC
Confidence            988755

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.60  E-value=0.13  Score=48.55  Aligned_cols=102  Identities=19%  Similarity=0.245  Sum_probs=59.2

Q ss_pred             cccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccc--cchhhhcccccc---ccccccC---------
Q 017490          174 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQ--SSALAVKNGIID---DLVDEKG---------  238 (370)
Q Consensus       174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~---------  238 (370)
                      .|++++|.|||+|.+|.++++.|...|. ++..+|...-...--.++  ...-.+....+.   +......         
T Consensus        34 ~l~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~  113 (426)
T d1yovb1          34 LLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHF  113 (426)
T ss_dssp             HHHHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEEC
T ss_pred             HHhcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeee
Confidence            3678899999999999999999988888 788988653221000000  000000000000   0000000         


Q ss_pred             -C-CCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCC
Q 017490          239 -C-HEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMK  276 (370)
Q Consensus       239 -~-~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk  276 (370)
                       . ....++++++.|+|+.++- +.+++.++|...+...|
T Consensus       114 ~~i~~~~~~~~~~~DlVi~~~D-n~~aR~~in~~c~~l~k  152 (426)
T d1yovb1         114 NKIQDFNDTFYRQFHIIVCGLD-SIIARRWINGMLISLLN  152 (426)
T ss_dssp             SCGGGBCHHHHTTCSEEEECCS-CHHHHHHHHHHHHHTCC
T ss_pred             ccccchHHHHHHhcchheeccC-cHHHHHHHHHHHHHhhc
Confidence             0 0123567899999988876 56778888877655443

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.46  E-value=0.93  Score=40.32  Aligned_cols=138  Identities=9%  Similarity=0.120  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEecCchhHHHHHHhccC----CC-------EEEEEcC
Q 017490          140 CAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPF----GV-------KIIATKR  208 (370)
Q Consensus       140 vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~----G~-------~V~~~dr  208 (370)
                      +|=-+++-+++.+|-.                ++.|...++.|.|.|.-|-.+|+.+...    |+       +++.+|+
T Consensus         4 Ta~V~lAglinAlki~----------------gk~l~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~   67 (294)
T d1pj3a1           4 TAAVALAGLLAAQKVI----------------SKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDK   67 (294)
T ss_dssp             HHHHHHHHHHHHHHHH----------------CCCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEET
T ss_pred             HHHHHHHHHHHHHHHh----------------CCCHHHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeC
Confidence            4556777777777642                5679999999999999999999987644    33       4999997


Q ss_pred             CCccccccccccchhhhccccccccccccC---CCCCHHHHHh--cCCEEEEeccCChhhhcccCHHHHh---cCCCCcE
Q 017490          209 SWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFAS--KADVVVCCLSLNKQTAGIVNKSFLS---SMKKGSL  280 (370)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~--~aDiV~l~lP~t~~t~~li~~~~l~---~mk~gai  280 (370)
                      ..--...-.+.   ...+    ...+....   ...+|+++++  +.|+++-+.    ..-++++++.++   .|.+..+
T Consensus        68 ~Glv~~~r~~~---~~~~----k~~~a~~~~~~~~~~L~e~i~~~kptvliG~S----~~~g~ft~evi~~Ma~~~~~PI  136 (294)
T d1pj3a1          68 YGLLVKGRKAK---IDSY----QEPFTHSAPESIPDTFEDAVNILKPSTIIGVA----GAGRLFTPDVIRAMASINERPV  136 (294)
T ss_dssp             TEECBTTCSSC---CCTT----TGGGCBCCCSSCCSSHHHHHHHHCCSEEEECC----CSSCCSCHHHHHHHHHHCSSCE
T ss_pred             CCCccCCCCcc---cHHH----HHHhhccccccchhHHHHHHHhcCCceEEEec----CCCCcCCHHHHHHHHhcCCCcE
Confidence            53210000000   0000    01111111   1247888876  788887663    133678888775   4568999


Q ss_pred             EEEcCCCccc---CHHHHHHHHHhCCce
Q 017490          281 LVNIARGGLL---DYEAIAHYLECGHLG  305 (370)
Q Consensus       281 lIN~sRg~~v---d~~aL~~aL~~g~i~  305 (370)
                      +.=.|....-   ..++.++. .+|+..
T Consensus       137 IFaLSNPt~~~e~~~~~a~~~-t~grai  163 (294)
T d1pj3a1         137 IFALSNPTAQAECTAEEAYTL-TEGRCL  163 (294)
T ss_dssp             EEECCSSGGGCSCCHHHHHHH-TTTCCE
T ss_pred             EEEccCCCCcCCcCHHHHHhh-ccCceE
Confidence            9999987542   34444443 344443

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.13  E-value=0.21  Score=42.36  Aligned_cols=34  Identities=26%  Similarity=0.309  Sum_probs=30.5

Q ss_pred             eEEEEecCchhHHHHHHhccCCC-EEEEEcCCCcc
Q 017490          179 TVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  212 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~  212 (370)
                      +|.|||.|..|..+|..|+..|. +|.++++....
T Consensus         3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~   37 (288)
T d3c96a1           3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEI   37 (288)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence            69999999999999999999996 89999987543

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=87.01  E-value=0.17  Score=41.37  Aligned_cols=35  Identities=17%  Similarity=0.108  Sum_probs=31.5

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCC
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      +++.|.|||-|..|...|..++.+|++|+++++..
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~   38 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGME   38 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence            46789999999999999999999999999998654

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=86.99  E-value=0.21  Score=44.57  Aligned_cols=35  Identities=23%  Similarity=0.290  Sum_probs=31.9

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCC
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      ....|.|||.|..|..+|..|+..|.+|.++++..
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~   40 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAG   40 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCC
Confidence            45679999999999999999999999999999764

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=86.82  E-value=0.16  Score=40.91  Aligned_cols=32  Identities=34%  Similarity=0.326  Sum_probs=27.3

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCEEEEEc
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATK  207 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~d  207 (370)
                      ++++|.|||-|.+|-++|..|+.+|.+|.++.
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~   33 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRL   33 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEE
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEEE
Confidence            46789999999999999999999998755443

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=86.46  E-value=0.29  Score=42.35  Aligned_cols=35  Identities=26%  Similarity=0.505  Sum_probs=29.7

Q ss_pred             CceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          177 GKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       177 g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      ||.+.|.|. +.||+++|+.|...|++|++.+|+..
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~   37 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEE   37 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            567777786 56999999999999999999998743

>d2qwxa1 c.23.5.3 (A:1-230) Quinone reductase type 2 (menadione reductase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Quinone reductase
domain: Quinone reductase type 2 (menadione reductase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.41  E-value=6.3  Score=32.49  Aligned_cols=106  Identities=16%  Similarity=0.154  Sum_probs=59.1

Q ss_pred             HHHHhcCCEEEEeccC-----ChhhhcccCHH-------------HHhcCCCCcEEEEcCCCccc----------CHHHH
Q 017490          244 FEFASKADVVVCCLSL-----NKQTAGIVNKS-------------FLSSMKKGSLLVNIARGGLL----------DYEAI  295 (370)
Q Consensus       244 ~ell~~aDiV~l~lP~-----t~~t~~li~~~-------------~l~~mk~gailIN~sRg~~v----------d~~aL  295 (370)
                      .+.+..||.|++..|.     +...++.||.=             .-..++....++-+++|+..          ...++
T Consensus        88 ~~~l~~AD~iv~~~P~y~~~~pa~lK~~iDrV~~~g~af~~~~~~~~g~l~~kk~~~i~t~g~~~~~~~~~g~~~~~~~~  167 (230)
T d2qwxa1          88 QKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYF  167 (230)
T ss_dssp             HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCSSCCGGGCTTTTCEEEEEEECSSCTGGGSTTSTTCCHHHH
T ss_pred             HHHHHhCCEEEEEeCcccccCCHHHHHHHHHhcccCcccccCCCCCcccccCCeEEEEeccCCchhhcccccccccHHHH
Confidence            3567889999999994     44566666541             11234444444444554421          23344


Q ss_pred             HHHHHhCCceEEEEecCCCCCCCCCCcccCCCceEEccCCCCccHHHHHHHHHHHHHHHHHHHcCCCCC
Q 017490          296 AHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLT  364 (370)
Q Consensus       296 ~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~  364 (370)
                      ...+...-....|+++.              +.+.+ -.....+++..+.+.+.+.+.++++.+.+++.
T Consensus       168 ~~~~~~~~~~~~G~~~~--------------~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~p  221 (230)
T d2qwxa1         168 LWPLQHGTLHFCGFKVL--------------APQIS-FAPEIASEEERKGMVAAWSQRLQTIWKEEPIP  221 (230)
T ss_dssp             HHHHHCCCCCTTTCEEC--------------CCEEE-CCTTTSCHHHHHHHHHHHHHHHHTGGGCCCCC
T ss_pred             HHHHHHHHHHhCCCeEc--------------ceEEE-ecCCCCCHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            44444433332222211              11112 11234577888888889999999998888754

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=86.25  E-value=0.22  Score=41.36  Aligned_cols=31  Identities=19%  Similarity=0.268  Sum_probs=28.7

Q ss_pred             eEEEEecCchhHHHHHHhccCCCEEEEEcCC
Q 017490          179 TVFILGFGNIGVELAKRLRPFGVKIIATKRS  209 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~  209 (370)
                      -|.|||.|..|...|..++.+|.+|..+++.
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            3789999999999999999999999999864

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=85.78  E-value=0.22  Score=42.03  Aligned_cols=36  Identities=14%  Similarity=0.273  Sum_probs=31.3

Q ss_pred             CceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          177 GKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       177 g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      +|++.|.|. +.||+++|+.|...|++|++.+++.+.
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~   37 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREG   37 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence            478888886 789999999999999999999987554

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.77  E-value=0.094  Score=51.01  Aligned_cols=51  Identities=18%  Similarity=0.173  Sum_probs=39.4

Q ss_pred             HHHHHHhcccCCCCcccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCC
Q 017490          158 MRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  210 (370)
Q Consensus       158 ~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~  210 (370)
                      |++++|=  |+......|+.++|.|||+|.+|.++|+.|.-.|. ++..+|...
T Consensus         8 YdRQlrl--wG~~gQ~~L~~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~   59 (529)
T d1yova1           8 YDRQLRL--WGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQ   59 (529)
T ss_dssp             THHHHHH--HHHHHHHHHHHCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSB
T ss_pred             hhHHHHh--hhHHHHHHHhCCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCc
Confidence            4444442  54444467999999999999999999999988887 788888643

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=85.72  E-value=0.24  Score=42.21  Aligned_cols=36  Identities=17%  Similarity=0.291  Sum_probs=30.8

Q ss_pred             CceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          177 GKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       177 g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      +.+|.|.|. |.||+++|+.|...|++|+..|++...
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~   38 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAND   38 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchh
Confidence            345778885 899999999999999999999987654

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=85.60  E-value=0.29  Score=40.23  Aligned_cols=31  Identities=26%  Similarity=0.384  Sum_probs=25.6

Q ss_pred             eEEEEecCchhHHHHHHhcc---CCCEEEEEcCC
Q 017490          179 TVFILGFGNIGVELAKRLRP---FGVKIIATKRS  209 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~---~G~~V~~~dr~  209 (370)
                      +|||=|+|+||+.+.|.+..   .+.+|.+.+..
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~vvaINd~   35 (169)
T d1hdgo1           2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDL   35 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECS
T ss_pred             EEEEECCChHHHHHHHHHHhccCCCEEEEEeccC
Confidence            79999999999999998753   45788888753

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.59  E-value=0.22  Score=45.42  Aligned_cols=31  Identities=23%  Similarity=0.309  Sum_probs=28.4

Q ss_pred             CceEEEEec-CchhHHHHHHhccCCCEEEEEc
Q 017490          177 GKTVFILGF-GNIGVELAKRLRPFGVKIIATK  207 (370)
Q Consensus       177 g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~d  207 (370)
                      |++|.|.|. |-||+.+++.|...|++|+++|
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            789999995 9999999999999999999997

>d1pjca2 c.23.12.2 (A:1-135,A:304-361) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=85.47  E-value=0.62  Score=38.88  Aligned_cols=99  Identities=13%  Similarity=0.058  Sum_probs=62.7

Q ss_pred             HHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCCEEEEeccCChhhhcccC
Q 017490          191 ELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCCLSLNKQTAGIVN  268 (370)
Q Consensus       191 ~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~l~lP~t~~t~~li~  268 (370)
                      ..+++|...|++|++=.-......        |      .++...+.+  -..+.++++ +||+|+..-|.++       
T Consensus        21 ~~vkkl~~~G~~V~VE~gaG~~a~--------f------sD~~Y~~aGa~i~~~~~~~~-~~diilkv~~p~~-------   78 (193)
T d1pjca2          21 SSVRTLVEAGHTVFIETQAGIGAG--------F------ADQDYVQAGAQVVPSAKDAW-SREMVVKVKEPLP-------   78 (193)
T ss_dssp             HHHHHHHTTTCEEEEETTTTGGGT--------C------CHHHHHHHTCEEESSHHHHH-TSSEEECSSCCCG-------
T ss_pred             HHHHHHHHCCCEEEEEcCcccccC--------C------CHHHHHhhcceeeecccccc-ccceEEEeccCCH-------
Confidence            457788889999998432221110        0      011111122  123555666 6898876554442       


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCC
Q 017490          269 KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWT  314 (370)
Q Consensus       269 ~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~  314 (370)
                       +.++.||+|+++|-.--  .....+++++|.+.++...++|....
T Consensus        79 -~e~~~lk~~~~li~~l~--p~~~~ell~~l~~~~it~~s~E~ipr  121 (193)
T d1pjca2          79 -AEYDLMQKDQLLFTYLH--LAAARELTEQLMRVGLTAIAYETVEL  121 (193)
T ss_dssp             -GGGGGCCTTCEEEECCC--GGGCHHHHHHHHHHTCEEEEGGGCCC
T ss_pred             -HHHHhhhcCceEEEecC--cccchHHHHHHHHcCCEEEEeeeccc
Confidence             45788999999997644  34567899999999999888877543

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=85.46  E-value=0.22  Score=41.02  Aligned_cols=31  Identities=23%  Similarity=0.403  Sum_probs=24.5

Q ss_pred             eEEEEecCchhHHHHHHhcc---CCCEEEEEcCC
Q 017490          179 TVFILGFGNIGVELAKRLRP---FGVKIIATKRS  209 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~---~G~~V~~~dr~  209 (370)
                      +|||=|+|+||+.+.|.+..   ..++|.+.+..
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~   35 (172)
T d1rm4a1           2 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDT   35 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECT
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEEcCC
Confidence            79999999999999997653   23677777643

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.36  E-value=0.26  Score=43.61  Aligned_cols=33  Identities=21%  Similarity=0.362  Sum_probs=30.0

Q ss_pred             eEEEEecCchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      .|.|||.|..|..+|+.|+..|.+|++++.+..
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~   35 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH   35 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            588999999999999999999999999997643

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=85.21  E-value=0.22  Score=35.41  Aligned_cols=38  Identities=16%  Similarity=0.309  Sum_probs=32.8

Q ss_pred             ccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          175 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       175 l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      -+|.+|.|.|. |.+|....+.++.+|++|++..+++++
T Consensus        30 ~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k   68 (77)
T d1o8ca2          30 PQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGREST   68 (77)
T ss_dssp             GGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGG
T ss_pred             cCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHH
Confidence            36788999886 999999999999999999998876543

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=85.06  E-value=0.85  Score=37.31  Aligned_cols=103  Identities=13%  Similarity=0.079  Sum_probs=62.4

Q ss_pred             cccCceEEEEecC--chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHH
Q 017490          174 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFA  247 (370)
Q Consensus       174 ~l~g~tvGIiGlG--~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell  247 (370)
                      .+.|.+|++||=|  ++..+++..+..||+++...-|..-..  +.... .      .+.......+    ...++++.+
T Consensus         2 ~~~~l~i~~vGD~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~--~~~~~-~------~~~~~~~~~g~~~~~~~d~~~a~   72 (183)
T d1duvg2           2 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWP--EAALV-T------ECRALAQQNGGNITLTEDVAKGV   72 (183)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCC--CHHHH-H------HHHHHHHHTTCEEEEESCHHHHH
T ss_pred             CcCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEEechHhhh--hHHHH-H------HHHHHHHhcCCceEEEechhhcc
Confidence            5789999999955  688999999999999999887632110  00000 0      0000111111    236899999


Q ss_pred             hcCCEEEEeccCC----h---h-------hhcccCHHHHhcCCCCcEEEEcC
Q 017490          248 SKADVVVCCLSLN----K---Q-------TAGIVNKSFLSSMKKGSLLVNIA  285 (370)
Q Consensus       248 ~~aDiV~l~lP~t----~---~-------t~~li~~~~l~~mk~gailIN~s  285 (370)
                      +.+|+|..-.=..    .   .       ....++...+...+++++|.-+.
T Consensus        73 ~~aDvvyt~~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~MH~L  124 (183)
T d1duvg2          73 EGADFIYTDVWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCL  124 (183)
T ss_dssp             TTCSEEEECCSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             ccCCEEEEEehhhhhhhhhhhhhhhhhhcccccccHHHHhcccCCeEEEccC
Confidence            9999997743211    0   0       11233444555678888888774

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=84.86  E-value=0.25  Score=38.34  Aligned_cols=33  Identities=18%  Similarity=0.203  Sum_probs=25.8

Q ss_pred             eEEEEecCchhHHHHHHhc-cCCCEEEE-EcCCCc
Q 017490          179 TVFILGFGNIGVELAKRLR-PFGVKIIA-TKRSWA  211 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~-~~G~~V~~-~dr~~~  211 (370)
                      +|.|+|+|.+|+.+++.+. ..|+++++ +|..+.
T Consensus         5 ~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~   39 (126)
T d2dt5a2           5 GLCIVGMGRLGSALADYPGFGESFELRGFFDVDPE   39 (126)
T ss_dssp             EEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTT
T ss_pred             eEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchH
Confidence            7999999999999999764 46888765 555443

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=84.56  E-value=0.3  Score=41.17  Aligned_cols=33  Identities=18%  Similarity=0.248  Sum_probs=29.8

Q ss_pred             eEEEEecCchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      -|.|||.|..|...|..|+..|++|+++++...
T Consensus         4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            378999999999999999999999999997643

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=84.39  E-value=0.31  Score=41.90  Aligned_cols=32  Identities=25%  Similarity=0.385  Sum_probs=29.5

Q ss_pred             eEEEEecCchhHHHHHHhccCCCEEEEEcCCC
Q 017490          179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      -|.|||.|-+|..+|..|+..|.+|+++++..
T Consensus         5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~~   36 (281)
T d2gf3a1           5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (281)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            38899999999999999999999999999854

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=84.25  E-value=0.55  Score=35.46  Aligned_cols=35  Identities=23%  Similarity=0.283  Sum_probs=27.6

Q ss_pred             CceEEEEecCchhHHHHHHhccC---CCEEEEEcCCCc
Q 017490          177 GKTVFILGFGNIGVELAKRLRPF---GVKIIATKRSWA  211 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l~~~---G~~V~~~dr~~~  211 (370)
                      .+++.|||.|.+|-++|..+.++   |.+|..+++...
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~   57 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEM   57 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSS
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccch
Confidence            36899999999999999765544   567998887543

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.17  E-value=0.24  Score=40.64  Aligned_cols=36  Identities=17%  Similarity=0.038  Sum_probs=31.9

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      +.++|.|||-|..|...|..|+.+|++|+++++...
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~   39 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMA   39 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSB
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecc
Confidence            467899999999999999999999999999986543

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=84.10  E-value=0.52  Score=37.11  Aligned_cols=33  Identities=30%  Similarity=0.392  Sum_probs=28.2

Q ss_pred             ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      .+|.|||.|.+|-++|..|+. +.+|..+++.+.
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~   33 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPV   33 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-CCCEEEEecccc
Confidence            378999999999999999976 679999987543

>d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=83.98  E-value=0.97  Score=40.37  Aligned_cols=98  Identities=19%  Similarity=0.184  Sum_probs=59.6

Q ss_pred             cccCceEEEEec---CchhHHHHHHhccCC-CEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHH
Q 017490          174 TLLGKTVFILGF---GNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFE  245 (370)
Q Consensus       174 ~l~g~tvGIiGl---G~IG~~vA~~l~~~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~e  245 (370)
                      .+.|++|+++|-   +++..+++..+..+| +++.+.-+..-..  +...           .+...+.+    ...++++
T Consensus       151 ~l~~~~i~~vGD~~~~~v~~S~~~~~~~~~~~~~~i~~P~~~~~--~~~~-----------~~~~~~~~~~~~~~~d~~~  217 (310)
T d1tuga1         151 RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAM--PQYI-----------LDMLDEKGIAWSLHSSIEE  217 (310)
T ss_dssp             CSSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCC--CHHH-----------HHHHHTTTCCEEEESCGGG
T ss_pred             CcccceEEEEeccccCcchHHHHHHHHhccCceEEEeCCccccc--chhc-----------ccccccccceeeeeechhh
Confidence            488999999997   678888898888885 6888876532110  0000           01111111    2367889


Q ss_pred             HHhcCCEEEEeccCChh----------hhcccCHHHHhcCCCCcEEEEc
Q 017490          246 FASKADVVVCCLSLNKQ----------TAGIVNKSFLSSMKKGSLLVNI  284 (370)
Q Consensus       246 ll~~aDiV~l~lP~t~~----------t~~li~~~~l~~mk~gailIN~  284 (370)
                      .++.+|+|...--..+.          ...-++.+.++.++++++|.-+
T Consensus       218 a~~~aDvvy~~~~~~e~~~~~~~~~~~~~~~v~~~~l~~a~~~~i~MHc  266 (310)
T d1tuga1         218 VMAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHP  266 (310)
T ss_dssp             TTTTCSEEEECCCCGGGSCHHHHHTTTTSSCBCGGGGTTSCSSCEEECC
T ss_pred             hccCCceeeecccchhhhcccchhhhhhhhhhhHHHHhcCCCCcEEeeC
Confidence            99999998753211110          1133566667777777777644

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=83.94  E-value=0.3  Score=42.53  Aligned_cols=32  Identities=28%  Similarity=0.408  Sum_probs=28.8

Q ss_pred             eEEEEecCchhHHHHHHhccCCC-EEEEEcCCC
Q 017490          179 TVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  210 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~  210 (370)
                      .|.|||.|.+|..+|..|+..|. +|.++|+..
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            58899999999999999998997 699999864

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.82  E-value=0.38  Score=44.98  Aligned_cols=107  Identities=16%  Similarity=0.154  Sum_probs=61.0

Q ss_pred             cCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhh----ccccc--cccccccC--CCCCHHHH
Q 017490          176 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAV----KNGII--DDLVDEKG--CHEDIFEF  246 (370)
Q Consensus       176 ~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~--~~~~l~el  246 (370)
                      .|.++.=||+|. |+.+...++.+|+ +|+|+|.++............+..    .....  ........  .....++.
T Consensus       216 pgd~fLDLGCG~-G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~~  294 (406)
T d1u2za_         216 KGDTFMDLGSGV-GNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAEL  294 (406)
T ss_dssp             TTCEEEEESCTT-SHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHH
T ss_pred             CCCEEEeCCCCC-cHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhccccccc
Confidence            578999999985 7777777777887 799999875431111000000000    00000  00000011  12335677


Q ss_pred             HhcCCEEEEecc-CChhhhcccCHHHHhcCCCCcEEEEc
Q 017490          247 ASKADVVVCCLS-LNKQTAGIVNKSFLSSMKKGSLLVNI  284 (370)
Q Consensus       247 l~~aDiV~l~lP-~t~~t~~li~~~~l~~mk~gailIN~  284 (370)
                      +..+|+|.++.- ..++....+ .+.+..||||+.||-+
T Consensus       295 ~~~adVV~inn~~f~~~l~~~L-~ei~r~LKPGGrIVs~  332 (406)
T d1u2za_         295 IPQCDVILVNNFLFDEDLNKKV-EKILQTAKVGCKIISL  332 (406)
T ss_dssp             GGGCSEEEECCTTCCHHHHHHH-HHHHTTCCTTCEEEES
T ss_pred             cccceEEEEecccCchHHHHHH-HHHHHhcCCCcEEEEe
Confidence            889999998532 234444444 4688899999999864

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.82  E-value=0.29  Score=42.55  Aligned_cols=31  Identities=26%  Similarity=0.353  Sum_probs=28.8

Q ss_pred             EEEEecCchhHHHHHHhccCCCEEEEEcCCC
Q 017490          180 VFILGFGNIGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       180 vGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      |.|||.|..|...|..|+..|++|++++++.
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            7899999999999999999999999998754

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=83.74  E-value=0.41  Score=40.74  Aligned_cols=35  Identities=26%  Similarity=0.292  Sum_probs=29.0

Q ss_pred             ceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          178 KTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       178 ~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      |.|.|.|. +.||+++|+.|...|++|++.|++..+
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~~   37 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAE   37 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChHH
Confidence            45667785 679999999999999999999987543

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.64  E-value=0.4  Score=37.38  Aligned_cols=35  Identities=34%  Similarity=0.443  Sum_probs=29.4

Q ss_pred             CceEEEEecCchhHHHHHHh----ccCCCEEEEEcCCCc
Q 017490          177 GKTVFILGFGNIGVELAKRL----RPFGVKIIATKRSWA  211 (370)
Q Consensus       177 g~tvGIiGlG~IG~~vA~~l----~~~G~~V~~~dr~~~  211 (370)
                      ++++.|||-|.+|-++|..+    +..|.+|..+++...
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~   75 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG   75 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEeccccc
Confidence            56899999999999998776    467999999887644

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=83.32  E-value=0.4  Score=38.38  Aligned_cols=32  Identities=22%  Similarity=0.264  Sum_probs=29.0

Q ss_pred             eEEEEecCchhHHHHHHhccCCCEEEEEcCCC
Q 017490          179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      -|.|||-|.+|-..|-.+..+|++|+.+++..
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~~   34 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERF   34 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSST
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEec
Confidence            37899999999999999999999999998753

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=83.25  E-value=0.28  Score=40.60  Aligned_cols=32  Identities=25%  Similarity=0.279  Sum_probs=29.1

Q ss_pred             eEEEEecCchhHHHHHHhccCCCEEEEEcCCC
Q 017490          179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      -|.|||.|..|...|..++.+|.+|+++++..
T Consensus         5 DvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~   36 (221)
T d1dxla1           5 DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG   36 (221)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            37899999999999999999999999998753

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.19  E-value=0.35  Score=40.17  Aligned_cols=32  Identities=22%  Similarity=0.296  Sum_probs=29.3

Q ss_pred             eEEEEecCchhHHHHHHhccCCCEEEEEcCCC
Q 017490          179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      -|.|||.|..|...|..+...|++|..++...
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~   38 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG   38 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            47899999999999999999999999998653

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=83.11  E-value=0.36  Score=39.51  Aligned_cols=32  Identities=28%  Similarity=0.349  Sum_probs=26.6

Q ss_pred             ceEEEEecCchhHHHHHHhccC-CCEEEEEcCC
Q 017490          178 KTVFILGFGNIGVELAKRLRPF-GVKIIATKRS  209 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~-G~~V~~~dr~  209 (370)
                      .+|||=|+|+||+.+.|.+... .++|.+.+..
T Consensus         2 ikigINGFGRIGR~v~R~~~~~~~i~ivaINd~   34 (166)
T d1gado1           2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL   34 (166)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEECS
T ss_pred             eEEEEECCcHHHHHHHHHHhhCCCeEEEEEeCC
Confidence            3799999999999999988654 5788888754

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.11  E-value=0.23  Score=41.47  Aligned_cols=34  Identities=15%  Similarity=-0.012  Sum_probs=29.3

Q ss_pred             ceEEEEecCchhHHHHHHhccCC-------CEEEEEcCCCc
Q 017490          178 KTVFILGFGNIGVELAKRLRPFG-------VKIIATKRSWA  211 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~~G-------~~V~~~dr~~~  211 (370)
                      .+|+|||.|.-|.+.|..|...|       ++|.+|++.+.
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~   43 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   43 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence            48999999999999999987666       68999998653

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=82.96  E-value=0.43  Score=37.87  Aligned_cols=103  Identities=15%  Similarity=0.126  Sum_probs=56.5

Q ss_pred             ceEEEEe-cCchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhcccccccccccc--CCCCCHHHHHhcCCE
Q 017490          178 KTVFILG-FGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK--GCHEDIFEFASKADV  252 (370)
Q Consensus       178 ~tvGIiG-lG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~ell~~aDi  252 (370)
                      .+|+||| .|.+|+.+|..+...|.  ++..+|....... ......++....     .....  ....+. +.++.||+
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~-~~g~a~Dl~~~~-----~~~~~~~i~~~~~-~~~~~aDi   73 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDD-TVGQAADTNHGI-----AYDSNTRVRQGGY-EDTAGSDV   73 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHH-HHHHHHHHHHHH-----TTTCCCEEEECCG-GGGTTCSE
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccc-cceeecchhhcc-----cccCCceEeeCCH-HHhhhcCE
Confidence            4799999 69999999999876665  7999996432210 000000111000     00000  011233 44689999


Q ss_pred             EEEecc--CChh-hh-ccc--CH-------HHHhcCCCCcEEEEcCCC
Q 017490          253 VVCCLS--LNKQ-TA-GIV--NK-------SFLSSMKKGSLLVNIARG  287 (370)
Q Consensus       253 V~l~lP--~t~~-t~-~li--~~-------~~l~~mk~gailIN~sRg  287 (370)
                      |+++.-  ..+. +| .++  |.       +.++...|.++++.++..
T Consensus        74 VvitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtNP  121 (142)
T d1o6za1          74 VVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNP  121 (142)
T ss_dssp             EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSS
T ss_pred             EEEecccccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecCh
Confidence            998743  3221 21 111  11       235567788999998554

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=82.83  E-value=0.86  Score=40.18  Aligned_cols=33  Identities=30%  Similarity=0.358  Sum_probs=27.8

Q ss_pred             ceEEEEec-CchhHHHHHHhccCC-CEEEEEcCCC
Q 017490          178 KTVFILGF-GNIGVELAKRLRPFG-VKIIATKRSW  210 (370)
Q Consensus       178 ~tvGIiGl-G~IG~~vA~~l~~~G-~~V~~~dr~~  210 (370)
                      ++|.|.|. |-||+.+++.|.+.| .+|++.|+..
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~   35 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGS   35 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCC
Confidence            36889985 999999999998888 5899998754

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.72  E-value=0.41  Score=42.44  Aligned_cols=34  Identities=29%  Similarity=0.321  Sum_probs=29.3

Q ss_pred             ceE-EEEe-cCchhHHHHHHhccCCCEEEEEcCCCc
Q 017490          178 KTV-FILG-FGNIGVELAKRLRPFGVKIIATKRSWA  211 (370)
Q Consensus       178 ~tv-GIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~  211 (370)
                      |+| .|.| .|-||+.+++.|...|++|+++||...
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~   36 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSS   36 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCc
Confidence            567 5778 589999999999999999999998653

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=82.64  E-value=0.37  Score=39.64  Aligned_cols=32  Identities=25%  Similarity=0.407  Sum_probs=25.2

Q ss_pred             ceEEEEecCchhHHHHHHhcc----CCCEEEEEcCC
Q 017490          178 KTVFILGFGNIGVELAKRLRP----FGVKIIATKRS  209 (370)
Q Consensus       178 ~tvGIiGlG~IG~~vA~~l~~----~G~~V~~~dr~  209 (370)
                      .+|||=|+|+||+.+.|.+..    -.++|.+.+..
T Consensus         2 ikigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd~   37 (173)
T d1obfo1           2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDL   37 (173)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECS
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcCC
Confidence            379999999999999998753    34678877753

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=82.31  E-value=0.39  Score=41.49  Aligned_cols=35  Identities=29%  Similarity=0.330  Sum_probs=28.4

Q ss_pred             ceE-EEEec-CchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490          178 KTV-FILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  212 (370)
Q Consensus       178 ~tv-GIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~  212 (370)
                      |+| .|.|. +.||+++|+.|...|++|++.+|+.++
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~   37 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDAT   37 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            455 45575 569999999999999999999987543

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.93  E-value=0.41  Score=42.53  Aligned_cols=34  Identities=26%  Similarity=0.302  Sum_probs=30.1

Q ss_pred             CceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCC
Q 017490          177 GKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       177 g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      -|++.|.| .|-||+.+++.|...|++|+++|+..
T Consensus        16 ~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~   50 (341)
T d1sb8a_          16 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFA   50 (341)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            46888888 59999999999999999999998743

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=81.92  E-value=4.5  Score=35.68  Aligned_cols=139  Identities=16%  Similarity=0.206  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEecCchhHHHHHHhccC----CC-------EEEEEcC
Q 017490          140 CAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPF----GV-------KIIATKR  208 (370)
Q Consensus       140 vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~----G~-------~V~~~dr  208 (370)
                      +|=-+++.+++.+|-.                +++|++.++.|.|.|.-|-.+|+.+...    |+       +++.+|+
T Consensus         4 TaaV~lAglinAlki~----------------gk~l~d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~   67 (298)
T d1gq2a1           4 TASVAVAGLLAALRIT----------------KNRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDS   67 (298)
T ss_dssp             HHHHHHHHHHHHHHHH----------------TSCGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEET
T ss_pred             HHHHHHHHHHHHHHHh----------------CCCHHHcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEEEEeC
Confidence            4556777777777642                5679999999999999999999987643    32       6888887


Q ss_pred             CCccccccccccchhhhccccccccccccCCCCCHHHHHhc--CCEEEEeccCChhhhcccCHHHHh---cCCCCcEEEE
Q 017490          209 SWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK--ADVVVCCLSLNKQTAGIVNKSFLS---SMKKGSLLVN  283 (370)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~l~lP~t~~t~~li~~~~l~---~mk~gailIN  283 (370)
                      ..--...-.+. ..+  +    ..+........++.++.+.  .++++-...    .-++++++.++   .|.+..++.=
T Consensus        68 kGlv~~~R~~l-~~~--k----~~~a~~~~~~~~l~~~i~~vkptvliG~s~----~~g~ft~evv~~ma~~~~~PIIFa  136 (298)
T d1gq2a1          68 KGLIVKGRASL-TPE--K----EHFAHEHCEMKNLEDIVKDIKPTVLIGVAA----IGGAFTQQILQDMAAFNKRPIIFA  136 (298)
T ss_dssp             TEECBTTCSSC-CTT--G----GGGCBSCCCCCCHHHHHHHHCCSEEEECSC----CTTCSCHHHHHHHHHHCSSCEEEE
T ss_pred             CCcccCCCccc-CHH--H----HHHHHHhhhhhhhHHHhhccChheeEeccc----ccCcCCHHHHHHHHhhCCCCEEEE
Confidence            54211000000 000  0    1112222234577777764  667766532    23778887665   5678999999


Q ss_pred             cCCCcc---cCHHHHHHHHHhCCce
Q 017490          284 IARGGL---LDYEAIAHYLECGHLG  305 (370)
Q Consensus       284 ~sRg~~---vd~~aL~~aL~~g~i~  305 (370)
                      .|+...   .+.++.+++=+-+.|.
T Consensus       137 LSNPt~~~E~~~~~a~~wt~G~ai~  161 (298)
T d1gq2a1         137 LSNPTSKAECTAEQLYKYTEGRGIF  161 (298)
T ss_dssp             CCSSGGGCSSCHHHHHHHTTTCCEE
T ss_pred             ccCCCCcCCCCHHHHhhhcccceEE
Confidence            998754   3444555544443343

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.86  E-value=0.48  Score=41.75  Aligned_cols=33  Identities=27%  Similarity=0.240  Sum_probs=29.4

Q ss_pred             ceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCC
Q 017490          178 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       178 ~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      |++.|.| .|-||+.+++.|...|++|+++||..
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~   35 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRS   35 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCC
Confidence            5777888 59999999999999999999999854

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.58  E-value=0.37  Score=41.97  Aligned_cols=37  Identities=24%  Similarity=0.397  Sum_probs=31.5

Q ss_pred             cCceEEEE--ecCchhHHHHHHhcc-CCCEEEEEcCCCcc
Q 017490          176 LGKTVFIL--GFGNIGVELAKRLRP-FGVKIIATKRSWAS  212 (370)
Q Consensus       176 ~g~tvGIi--GlG~IG~~vA~~l~~-~G~~V~~~dr~~~~  212 (370)
                      +||+|+||  |-+.||+++|+.|.. .|++|+.++|+.++
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~   40 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTR   40 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence            58999888  678999999999876 59999999998654

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=81.20  E-value=0.39  Score=39.36  Aligned_cols=30  Identities=30%  Similarity=0.345  Sum_probs=24.9

Q ss_pred             eEEEEecCchhHHHHHHhcc-CCCEEEEEcC
Q 017490          179 TVFILGFGNIGVELAKRLRP-FGVKIIATKR  208 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~-~G~~V~~~dr  208 (370)
                      +|||=|+|+||+.+.|.+.. -..+|.+.+.
T Consensus         3 kIgINGFGRIGR~v~R~~~~~~~~~ivaINd   33 (169)
T d1u8fo1           3 KVGVNGFGRIGRLVTRAAFNSGKVDIVAIND   33 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSEEEEEEC
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCcEEEEecC
Confidence            79999999999999997764 3578888764

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=80.50  E-value=0.57  Score=41.09  Aligned_cols=34  Identities=24%  Similarity=0.324  Sum_probs=29.5

Q ss_pred             eEEEEecCchhHHHHHHhc-----cCCCEEEEEcCCCcc
Q 017490          179 TVFILGFGNIGVELAKRLR-----PFGVKIIATKRSWAS  212 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~-----~~G~~V~~~dr~~~~  212 (370)
                      -|.|||.|..|..+|..|+     ..|.+|.++++.+..
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~   47 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   47 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence            5899999999999999984     579999999987544

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.28  E-value=0.61  Score=38.85  Aligned_cols=32  Identities=25%  Similarity=0.320  Sum_probs=29.3

Q ss_pred             eEEEEecCchhHHHHHHhccCCCEEEEEcCCC
Q 017490          179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSW  210 (370)
Q Consensus       179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~  210 (370)
                      -|.|||.|..|...|..++.+|++|.+++...
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~   36 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVT   36 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECCCC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            48899999999999999999999999999654