Citrus Sinensis ID: 017491

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370
Protein Sequence
MFQHHKKPSSMNSHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGKLAGERRGLDLQRNTASSSGVIGRSMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETVTPASFKGTIGNQAVPDVGTMKDFCPPLNFSQFQDLNLYGGDQIDHLQQNMDRQSSLDHGFMQSNDNICLGKKRPSPYNGGSGTGKSPLMWSDDLRLQDLATPPCIGPQDDPFKGDQIQIAPPSNDLDSISDIYETKPVLSGDAVSSEKKFEASSAKLERPSPRRTPISTERMNPAMMNTGGMQQGRNSPYG
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHcccccEEEEEHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcHHHccccccccccccccccccEEEcccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccc
Coil and Loop (DISEMBL)
mfqhhkkpssmnshhdrplcvqgdsglvlttdpkprlrwTVELHERFVDAVtqlggpdkatpkTIMRVMGVKGLTLYHLKSHLqkfrlgkqphkefndhsikdgklagerrgldlqrntasssgvigRSMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTlasgetvtpasfkgtignqavpdvgtmkdfcpplnfsqfqdlnlyggdqidhlqqnmdrqssldhgfmqsndniclgkkrpspynggsgtgksplmwsddlrlqdlatppcigpqddpfkgdqiqiappsndldsisdiyetkpvlsgdavssekkfeassaklerpsprrtpistermnpammntggmqqgrnspyg
Flexible Loop (DISEMBL)
mfqhhkkpssmnshhdrplcVQGDSGLVLTTDPKPRLRWTVELHERFVDavtqlggpdkatpktIMRVMGVKGLTLYHLKSHLQKfrlgkqphkefndhsikdgklagerrgldlqrntasssgvigrSMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETVTPASFKGTIGNQAVPDVGTMKDFCPPLNFSQFQDLNLYGGDQIDHLQQNMDRQSSLDHGFMQSNDNICLGKKRPSPYNGGSGTGKSPLMWSDDLRLQDLATPPCIGPQDDPFKGDQIQIAPPSNDLDSISDIYETKpvlsgdavssekkfeassaklerpsprrtpistermnpammntggmqqgrnspyg
Low Complexity Region (SEG)
MFQHHKKPSSMNSHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGKLAGERRGLDLQRNTASSSGVIGRSMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETVTPASFKGTIGNQAVPDVGTMKDFCPPLNFSQFQDLNLYGGDQIDHLQQNMDRQSSLDHGFMQSNDNICLGKKRPSPYNGGSGTGKSPLMWSDDLRLQDLATPPCIGPQDDPFKGDQIQIAPPSNDLDSISDIYETKPVLSGDavssekkfeassakleRPSPRRTPISTERMNPAMMNTGGMQQGRNSPYG
Disordered region (IsUnstruct)
*******************CVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL**********************************************************VQRHLQLRIEAQGKYMQSILEKACQTLASGETVTPASFKGTIGNQAVPDVGTMKDFCPPLNFSQFQDLNLYGGDQID***************************************************************************************************************************************************
Disordered Region (DISOPRED)
*************************************RWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFR*******************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
***************DRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGKLAGERRGLDLQRNTASSSGVIGRSMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETVTPASFKGTIGNQAVPDVGTMKDFCPPLNFSQFQDLNLYGGDQIDHLQQNMDRQSSLDHGFMQSNDNICLGKKRPSPYNGGSGTGKSPLMWSDDLRLQDLATPPCIGPQDDPFKGDQIQIAPPSNDLDSISDIYETKPVL************************RTPISTERMNPAMMNTGG**********
Disordered Region (DISPRO)
**********************************PRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQP*******************************GVIGRSMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLA***************************************************************************************************R*Q*LATPPCIGPQDDPFKGDQIQIAPPSNDLDSISDIYETK*******************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFQHHKKPSSMNSHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGKLAGERRGLDLQRNTASSSGVIGRSMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETVTPASFKGTIGNQAVPDVGTMKDFCPPLNFSQFQDLNLYGGDQIDHLQQNMDRQSSLDHGFMQSNDNICLGKKRPSPYNGGSGTGKSPLMWSDDLRLQDLATPPCIGPQDDPFKGDQIQIAPPSNDLDSISDIYETKPVLSGDAVSSEKKFEASSAKLERPSPRRTPISTERMNPAMMNTGGMQQGRNSPYG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	370	2.2.26 [Sep-21-2011]
Q9SAK5	358	Myb family transcription	yes	no	0.927	0.958	0.602	1e-106
Q8GUN5	413	Protein PHR1-LIKE 1 OS=Ar	no	no	0.427	0.382	0.413	1e-28
Q700D9	255	Putative Myb family trans	no	no	0.183	0.266	0.506	8e-14
Q93WJ9	403	Transcription repressor K	no	no	0.162	0.148	0.566	3e-13
Q9C616	388	Probable transcription fa	no	no	0.162	0.154	0.566	5e-13
Q0J235	532	Probable transcription fa	no	no	0.189	0.131	0.514	7e-13
Q9FJV5	276	Probable transcription fa	no	no	0.151	0.202	0.571	3e-12
Q941I2	322	Probable transcription fa	no	no	0.162	0.186	0.533	3e-12
Q9ZWJ9	664	Two-component response re	no	no	0.224	0.125	0.444	2e-11
Q940D0	690	Two-component response re	no	no	0.145	0.078	0.563	2e-10

>sp|Q9SAK5|APL_ARATH Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2

 Score =  385 bits (988), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 232/385 (60%), Positives = 271/385 (70%), Gaps = 42/385 (10%)

Query: 1   MFQHHKKPSSMN-SHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDK 59
           MF H KKPSSMN S+ +R +CVQGDSGLVLTTDPKPRLRWTVELHERFVDAV QLGGPDK
Sbjct: 1   MF-HAKKPSSMNGSYENRAMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDK 59

Query: 60  ATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGKLAGERRGLDLQRNT 119
           ATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKE+ DHS K+G  A     +D+QRN 
Sbjct: 60  ATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEYGDHSTKEGSRAS---AMDIQRNV 116

Query: 120 ASSSGVIGRSMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETV 179
           ASSSG++ R+MNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILE+ACQTLA GE +
Sbjct: 117 ASSSGMMSRNMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILERACQTLA-GENM 175

Query: 180 --------TPASFKGTIGNQAVPDVGTMKDFCPPLNFSQFQDLNLYGG--DQI-DHLQQN 228
                       +KG +G+ ++     +     PL+F  FQDLN+YG   DQ+ DH   N
Sbjct: 176 AAATAAAAVGGGYKGNLGSSSLS--AAVGPPPHPLSFPPFQDLNIYGNTTDQVLDH--HN 231

Query: 229 MDRQSSLDH--GFMQSNDNICLGKKRPSPYNGGSGTGKSPLMWSDDLRLQDLATPPCIGP 286
              Q+  +H  G   ++ NI LGKKRP+P N G+   K  LMWSD  +  DL+    I  
Sbjct: 232 FHHQNIENHFTGNNAADTNIYLGKKRPNP-NFGNDVRKGLLMWSD--QDHDLSANQSI-- 286

Query: 287 QDDPFKGDQIQIAP-PSNDLDSISDIYETKPVLSGDAVSSEKKFEASSAKLERPSPRRTP 345
            DD  +  QIQ+A   S DLDS+S+IYE K  LSGD  ++  K       LERPSPRR+P
Sbjct: 287 -DDEHR-IQIQMATHVSTDLDSLSEIYERKSGLSGDEGNNGGKL------LERPSPRRSP 338

Query: 346 ISTERMNPAMMNTGGMQQGRNSPYG 370
           +S     P M   GG+ QGRNSP+G
Sbjct: 339 LS-----PMMNPNGGLIQGRNSPFG 358

Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8GUN5|PHL1_ARATH Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1 PE=1 SV=1

 Score =  127 bits (320), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 69/167 (41%), Positives = 106/167 (63%), Gaps = 9/167 (5%)

Query: 34  KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGK-QP 92
           K R+RWT ELHE FV+AV QLGG ++ATPK +++++   GLT+YH+KSHLQK+R  + +P
Sbjct: 231 KQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQKYRTARYKP 290

Query: 93  HKEFNDHSIKDGKLAG--ERRGLDLQRNTASSSGVIGRSMNEMQMEVQRRLHEQLEVQRH 150
                    ++ K+    + + LD++ +   +  +       +QMEVQ+RLHEQLE+QR 
Sbjct: 291 ETSEVTGEPQEKKMTSIEDIKSLDMKTSVEITQAL------RLQMEVQKRLHEQLEIQRS 344

Query: 151 LQLRIEAQGKYMQSILEKACQTLASGETVTPASFKGTIGNQAVPDVG 197
           LQL+IE QG+Y+Q + EK  +   +  + + AS K   G+ A  +VG
Sbjct: 345 LQLQIEKQGRYLQMMFEKQQKIQDNKSSSSEASPKQCNGSFAEVEVG 391

Transcription factor acting as central integrator of phosphate starvation responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2

 Score = 78.2 bits (191), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 48/73 (65%), Gaps = 5/73 (6%)

Query: 20 CVQGDSGLV-----LTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGL 74
          C + + G++         P PRLRWT ELH  FV AV  LGG  KATPK ++++M VKGL
Sbjct: 4  CGRSNDGVIGGVRPYVRSPVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGL 63

Query: 75 TLYHLKSHLQKFR 87
          T+ H+KSHLQ +R
Sbjct: 64 TISHVKSHLQMYR 76

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WJ9|KAN1_ARATH Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1

 Score = 76.3 bits (186), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 44/60 (73%)

Query: 35  PRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHK 94
           PR+RWT  LH RFV AV  LGG ++ATPK+++ +M VK LTL H+KSHLQ +R  K  +K
Sbjct: 220 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTNK 279

Transcriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C616|KAN2_ARATH Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1

 Score = 75.9 bits (185), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 43/60 (71%)

Query: 35  PRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHK 94
           PR+RWT  LH RFV AV  LGG ++ATPK+++ +M VK LTL H+KSHLQ +R  K   K
Sbjct: 214 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDK 273

Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0J235|ROLL9_ORYSJ Probable transcription factor RL9 OS=Oryza sativa subsp. japonica GN=RL9 PE=2 SV=2

 Score = 75.5 bits (184), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 36/70 (51%), Positives = 45/70 (64%)

Query: 35  PRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHK 94
           PR+RWT  LH RFV AV  LGG ++ATPK+++ +M VK LTL H+KSHLQ +R  K   K
Sbjct: 325 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKSTDK 384

Query: 95  EFNDHSIKDG 104
                   DG
Sbjct: 385 PAASSGPADG 394

Probable transcription factor that regulates abaxial identity during leaf development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FJV5|KAN4_ARATH Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1

 Score = 73.2 bits (178), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/56 (57%), Positives = 41/56 (73%)

Query: 35  PRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGK 90
           PR+RWT  LH  FV AV  LGG ++ATPK+++ +M VK LTL H+KSHLQ +R  K
Sbjct: 106 PRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVK 161

Probable transcritpion factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds.

Arabidopsis thaliana (taxid: 3702)

>sp|Q941I2|KAN3_ARATH Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 42/60 (70%)

Query: 35  PRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHK 94
           PR+RWT  LH  FV AV  LGG ++ATPK+++ +M V+ LTL H+KSHLQ +R  K   K
Sbjct: 165 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRTIKSTEK 224

Probable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZWJ9|ARR2_ARATH Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 55/90 (61%), Gaps = 7/90 (7%)

Query: 22  QGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKS 81
           QGD     ++  KPR+ W+VELH++FV AV QLG  DKA PK I+ +M V GLT  ++ S
Sbjct: 204 QGDDKEDSSSLKKPRVVWSVELHQQFVAAVNQLG-VDKAVPKKILEMMNVPGLTRENVAS 262

Query: 82  HLQKFRL------GKQPHKEFNDHSIKDGK 105
           HLQK+R+      G   H+   +HS   G+
Sbjct: 263 HLQKYRIYLRRLGGVSQHQGNMNHSFMTGQ 292

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway.

Arabidopsis thaliana (taxid: 3702)

>sp|Q940D0|ARR1_ARATH Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2

 Score = 67.4 bits (163), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 42/55 (76%), Gaps = 1/55 (1%)

Query: 34  KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 88
           KPR+ W+VELH++FV AV QLG  +KA PK I+ +M V GLT  ++ SHLQK+R+
Sbjct: 237 KPRVVWSVELHQQFVAAVNQLG-VEKAVPKKILELMNVPGLTRENVASHLQKYRI 290

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	370
147797311	356	hypothetical protein VITISV_013342 [Viti	0.945	0.983	0.760	1e-150
359494672	347	PREDICTED: myb family transcription fact	0.921	0.982	0.759	1e-146
255564111	346	transcription factor, putative [Ricinus	0.921	0.985	0.769	1e-146
356557050	370	PREDICTED: myb family transcription fact	0.937	0.937	0.727	1e-143
56269839	356	myb family transcription factor-related	0.948	0.985	0.746	1e-142
356525732	370	PREDICTED: myb family transcription fact	0.937	0.937	0.719	1e-141
224101311	365	predicted protein [Populus trichocarpa]	0.945	0.958	0.716	1e-138
297736106	329	unnamed protein product [Vitis vinifera]	0.875	0.984	0.714	1e-136
311780285	358	IPN2 [Lotus japonicus]	0.921	0.952	0.712	1e-131
356556674	355	PREDICTED: myb family transcription fact	0.918	0.957	0.667	1e-124

>gi|147797311|emb|CAN76008.1| hypothetical protein VITISV_013342 [Vitis vinifera]

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 286/376 (76%), Positives = 317/376 (84%), Gaps = 26/376 (6%)

Query: 1   MFQHHKKPSSMNSHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKA 60
           MF HHKKPS+MNSH DRP+CVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKA
Sbjct: 1   MF-HHKKPSTMNSH-DRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKA 58

Query: 61  TPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGKLAGERRGLDLQRNTA 120
           TPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKD         L+LQRN A
Sbjct: 59  TPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDAS------ALELQRNIA 112

Query: 121 SSSGVIGRSMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETVT 180
           SSSGV+ R+ NEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQ+ILEKACQTLA GE + 
Sbjct: 113 SSSGVMSRNTNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQTILEKACQTLA-GENMA 171

Query: 181 PASFKGTIGNQAVPDVGTMKDFCPPLNFSQFQDLNLYGGDQIDHLQQNMDRQSSLDHGFM 240
             ++KG IGNQ VPD+G MKDF   LNF   QDLN+YGGDQ+D LQQ+MDR  SLD GF+
Sbjct: 172 LGNYKG-IGNQGVPDMGAMKDFGSSLNFPSLQDLNIYGGDQLD-LQQSMDR--SLD-GFI 226

Query: 241 QSNDNICLGKKRPSPYNGGSGTGKSPLMWSDDLRLQDLATPP-CIGPQDDPFKGDQIQIA 299
           Q+ +N+CLGKKRPSPY   SG+GK+PL+WSDDLR+Q+L T   C+G QDDPFKGDQIQIA
Sbjct: 227 QNTENMCLGKKRPSPY---SGSGKNPLIWSDDLRMQELGTAASCLGSQDDPFKGDQIQIA 283

Query: 300 PPS----NDLDSISDIYETKPVLSGDAVSSEKKFEAS-SAKLERPSPRRTPISTERMNPA 354
           PPS     D+DSISDIYETKP+LSGD +  EKKF+ S SAKL RPSPRR P+ T+RMNP 
Sbjct: 284 PPSMDRGADMDSISDIYETKPILSGDPM-GEKKFDGSGSAKLGRPSPRRAPLPTDRMNP- 341

Query: 355 MMNTGGMQQGRNSPYG 370
           M+N G M QGR+S YG
Sbjct: 342 MINAGAMPQGRSS-YG 356

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494672|ref|XP_002265800.2| PREDICTED: myb family transcription factor APL [Vitis vinifera]

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 278/366 (75%), Positives = 308/366 (84%), Gaps = 25/366 (6%)

Query: 11  MNSHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMG 70
           MNSH DRP+CVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMG
Sbjct: 1   MNSH-DRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMG 59

Query: 71  VKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGKLAGERRGLDLQRNTASSSGVIGRSM 130
           VKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKD         L+LQRN ASSSGV+ R+ 
Sbjct: 60  VKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDAS------ALELQRNIASSSGVMSRNT 113

Query: 131 NEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETVTPASFKGTIGN 190
           NEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQ+ILEKACQTLA GE +   ++KG IGN
Sbjct: 114 NEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQTILEKACQTLA-GENMALGNYKG-IGN 171

Query: 191 QAVPDVGTMKDFCPPLNFSQFQDLNLYGGDQIDHLQQNMDRQSSLDHGFMQSNDNICLGK 250
           Q VPD+G MKDF   LNF   QDLN+YGGDQ+D LQQ+MDR  SLD GF+Q+ +N+CLGK
Sbjct: 172 QGVPDMGAMKDFGSSLNFPSLQDLNIYGGDQLD-LQQSMDR--SLD-GFIQNTENMCLGK 227

Query: 251 KRPSPYNGGSGTGKSPLMWSDDLRLQDLATPP-CIGPQDDPFKGDQIQIAPPS----NDL 305
           KRPSPY   SG+GK+PL+WSDDLR+Q+L T   C+G QDDPFKGDQIQIAPPS     D+
Sbjct: 228 KRPSPY---SGSGKNPLIWSDDLRMQELGTAASCLGSQDDPFKGDQIQIAPPSMDRGADM 284

Query: 306 DSISDIYETKPVLSGDAVSSEKKFEAS-SAKLERPSPRRTPISTERMNPAMMNTGGMQQG 364
           DSISDIYETKP+LSGD +  EKKF+ S SAKL RPSPRR P+ T+RMNP M+N G M QG
Sbjct: 285 DSISDIYETKPILSGDPM-GEKKFDGSGSAKLGRPSPRRAPLPTDRMNP-MINAGAMPQG 342

Query: 365 RNSPYG 370
           R+S YG
Sbjct: 343 RSS-YG 347

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564111|ref|XP_002523053.1| transcription factor, putative [Ricinus communis] gi|223537710|gb|EEF39332.1| transcription factor, putative [Ricinus communis]

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 281/365 (76%), Positives = 310/365 (84%), Gaps = 24/365 (6%)

Query: 11  MNSHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMG 70
           MNSH DRP+CVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMG
Sbjct: 1   MNSH-DRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMG 59

Query: 71  VKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGKLAGERRGLDLQRNTASSSGVIGRSM 130
           VKGLTLYHLKSHLQKFRLGKQPHKEF+D SIKDG        LDLQR+ AS+S ++GRSM
Sbjct: 60  VKGLTLYHLKSHLQKFRLGKQPHKEFSDPSIKDGP------ALDLQRSAASTSAMMGRSM 113

Query: 131 NEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETVTPASFKGTIGN 190
           NEMQMEVQRRLHEQLEVQRHLQLRIEA GKYMQ++LEKA QTLA GE +   S+KG IGN
Sbjct: 114 NEMQMEVQRRLHEQLEVQRHLQLRIEAHGKYMQNMLEKAYQTLA-GENMASGSYKG-IGN 171

Query: 191 QAVPDVGTMKDFCPPLNFSQFQDLNLYGGDQIDHLQQNMDRQSSLDHGFMQSNDNICLGK 250
           Q VPD+G MKDF  PLNF QFQDLN+YGGDQ+D LQQNMDR  SLD GFM +ND+ICLGK
Sbjct: 172 QGVPDLGAMKDFG-PLNFPQFQDLNIYGGDQLD-LQQNMDR-PSLD-GFMPNNDHICLGK 227

Query: 251 KRPSPYNGGSGTGKSPLMWSDDLRLQDLATPP-CIGPQDDPFKGDQIQIAPPS----NDL 305
           KR SPY   SG+GKSPL+WSDDLRLQDL + P C+GP DD FK DQIQIAPPS     DL
Sbjct: 228 KRSSPY---SGSGKSPLIWSDDLRLQDLGSAPTCLGPPDDLFKSDQIQIAPPSMDRGTDL 284

Query: 306 DSISDIYETKPVLSGDAVSSEKKFEASSAKLERPSPRRTPISTERMNPAMMNTGGMQQGR 365
           DSISDIYETKP+L GDA+  EKKF+AS+ KLERPSPRR P+ T+RM+P M+N+G M Q R
Sbjct: 285 DSISDIYETKPMLQGDAM-GEKKFDAST-KLERPSPRRAPLPTDRMSP-MINSGAMPQDR 341

Query: 366 NSPYG 370
           NSP+G
Sbjct: 342 NSPFG 346

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557050|ref|XP_003546831.1| PREDICTED: myb family transcription factor APL-like [Glycine max]

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 277/381 (72%), Positives = 310/381 (81%), Gaps = 34/381 (8%)

Query: 6   KKPSSMNSHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTI 65
           KKPS+MNSH DRP+CVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTI
Sbjct: 8   KKPSTMNSH-DRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTI 66

Query: 66  MRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGKLAGERRGLDLQRNTASSSGV 125
           MRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKD         L+LQRNTASSS +
Sbjct: 67  MRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDAS------ALELQRNTASSSAM 120

Query: 126 IGRSMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETVTPAS-- 183
           IGR+MNEMQ+EVQRRLHEQLEVQ+HLQLRIEAQGKYMQSILEKA QTLA GE +  A+  
Sbjct: 121 IGRNMNEMQIEVQRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYQTLA-GENMASAATN 179

Query: 184 FKGTI--GNQAVPDVG-TMKDFCPPLNFSQFQDL-NLYGGDQIDHLQQNMDRQSSLDHGF 239
            KG I   +Q +PD+G  MK+F  PL FS FQDL N+YGGDQID LQQNM++   LDHGF
Sbjct: 180 LKGAIVPHHQGIPDMGVVMKEFGSPLGFSSFQDLENIYGGDQID-LQQNMEK-PPLDHGF 237

Query: 240 MQSNDNICLGKKRP-SPYNGGSGTGKSPLMWSDDLRLQDLATPP--CIGPQDDPFKGDQI 296
           M  N+ +CLGKKR  +PY   SG+GKSPL+WSDDLRLQDL  P   C+GPQDDPFKGDQI
Sbjct: 238 MPINETLCLGKKRSNNPY---SGSGKSPLIWSDDLRLQDLGGPASSCLGPQDDPFKGDQI 294

Query: 297 QIAPP-------SNDLDSISDIYETKPVLSGDAVSSEKKFEASSAKLERPSPRRTPISTE 349
           QIAPP       S D+D +S+IY++KPVL     S EKKF+ASS KLERPSPRR P+  E
Sbjct: 295 QIAPPGSLDRGASTDIDPMSEIYDSKPVLQ----SEEKKFDASSMKLERPSPRRAPLQAE 350

Query: 350 RMNPAMMNTGGMQQGRNSPYG 370
           RM+P M++TG M QGR SP+G
Sbjct: 351 RMSP-MISTGTMAQGRGSPFG 370

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|56269839|gb|AAV85474.1| myb family transcription factor-related protein [Populus tomentosa]

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 280/375 (74%), Positives = 314/375 (83%), Gaps = 24/375 (6%)

Query: 1   MFQHHKKPSSMNSHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKA 60
           MF H KKPS+MNSH DRP+CVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKA
Sbjct: 1   MF-HTKKPSTMNSH-DRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKA 58

Query: 61  TPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGKLAGERRGLDLQRNTA 120
           TPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQP K+F+DHSIKD         LDLQR+ A
Sbjct: 59  TPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPLKDFSDHSIKDAS------ALDLQRSAA 112

Query: 121 SSSGVIGRSMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETVT 180
           SSSG++ RSMNEMQMEVQRRLHEQLEVQRHLQLR EAQGKY+QS+LEKACQTLA  + + 
Sbjct: 113 SSSGMMSRSMNEMQMEVQRRLHEQLEVQRHLQLRTEAQGKYIQSLLEKACQTLAGDQNLA 172

Query: 181 PASFKGTIGNQAVPDVGTMKDFCPPLNFSQFQDLNLYGGDQIDHLQQNMDRQSSLDHGFM 240
             S+KG +GNQ +P +G MK+F   LNF  FQDLN+YGGDQ+D LQ NMDR  SLD GFM
Sbjct: 173 SGSYKG-LGNQGIPGMGAMKEFG-SLNFPAFQDLNIYGGDQLD-LQHNMDR-PSLD-GFM 227

Query: 241 QSNDNICLGKKRPSPYNGGSGTGKSPLMWSDDLRLQDLAT-PPCIGPQDDPFKGDQIQIA 299
            +NDNICLGKKRPSPY+   G+GKSPL+W DDLRLQDL + P C+ PQDDPFKGDQIQ+A
Sbjct: 228 ANNDNICLGKKRPSPYD---GSGKSPLIWPDDLRLQDLGSGPACLEPQDDPFKGDQIQMA 284

Query: 300 PPS----NDLDSISDIYETKPVLSGDAVSSEKKFEASSAKLERPSPRRTPISTERMNPAM 355
           PPS     DLDSISD+YE KP L GD +  EKKFEA SAKL+RPSPRR+P++ ERM+P M
Sbjct: 285 PPSMDRGTDLDSISDMYEMKPALQGDGL-DEKKFEA-SAKLKRPSPRRSPLAAERMSP-M 341

Query: 356 MNTGGMQQGRNSPYG 370
           +NTG M QGRNSP+G
Sbjct: 342 INTGAMPQGRNSPFG 356

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525732|ref|XP_003531477.1| PREDICTED: myb family transcription factor APL-like [Glycine max]

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 274/381 (71%), Positives = 311/381 (81%), Gaps = 34/381 (8%)

Query: 6   KKPSSMNSHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTI 65
           KKPS+MNSH DRP+CVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTI
Sbjct: 8   KKPSTMNSH-DRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTI 66

Query: 66  MRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGKLAGERRGLDLQRNTASSSGV 125
           MRVMGVKGLTLYHLKSHLQKFRLGKQPHK+FNDHSIKD         L+LQRNTASSS +
Sbjct: 67  MRVMGVKGLTLYHLKSHLQKFRLGKQPHKDFNDHSIKDAS------ALELQRNTASSSAM 120

Query: 126 IGRSMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETVTPAS-- 183
           IGR+MNEMQ+EVQRRLHEQLEVQ+HLQLRIEAQGKYMQSILEKA QTLA GE +  A+  
Sbjct: 121 IGRNMNEMQIEVQRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYQTLA-GENMASAATN 179

Query: 184 FKGTI--GNQAVPDVG-TMKDFCPPLNFSQFQDL-NLYGGDQIDHLQQNMDRQSSLDHGF 239
            K  I   +Q +PD+G  MK+F  PL FS FQDL N+YGG+QID LQQNM++  SLDHGF
Sbjct: 180 LKSAIVPHHQGIPDMGVVMKEFGSPLGFSSFQDLENIYGGNQID-LQQNMEK-PSLDHGF 237

Query: 240 MQSNDNICLGKKRP-SPYNGGSGTGKSPLMWSDDLRLQDLATPP--CIGPQDDPFKGDQI 296
           M  N+++CLGKKR  +PY   SG+GK+PL+WSDDLRLQDL  P   C+GPQDDPFKGDQI
Sbjct: 238 MPINESLCLGKKRSNNPY---SGSGKNPLIWSDDLRLQDLGGPASSCLGPQDDPFKGDQI 294

Query: 297 QIAPP-------SNDLDSISDIYETKPVLSGDAVSSEKKFEASSAKLERPSPRRTPISTE 349
           QIAPP       S D+D +S+IY++KPVL     S EKKF+ASS KLERPSPRR P+  E
Sbjct: 295 QIAPPGSLDRGASTDIDPMSEIYDSKPVLQ----SEEKKFDASSMKLERPSPRRAPLQPE 350

Query: 350 RMNPAMMNTGGMQQGRNSPYG 370
           RM+P M++TG M QGR SP+G
Sbjct: 351 RMSP-MISTGTMAQGRGSPFG 370

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101311|ref|XP_002312227.1| predicted protein [Populus trichocarpa] gi|222852047|gb|EEE89594.1| predicted protein [Populus trichocarpa]

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 276/385 (71%), Positives = 306/385 (79%), Gaps = 35/385 (9%)

Query: 1   MFQHHKKPSSMNSHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKA 60
           MF H KKPS+MNSH DRP+CVQ DSGLVLTTDPKPRLRWTVELHERFVDAV QLGGPDKA
Sbjct: 1   MF-HTKKPSTMNSH-DRPMCVQ-DSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKA 57

Query: 61  TPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGKLAGERRGLDLQRNTA 120
           TPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQ HKEFNDHSIKD         LDLQR+ A
Sbjct: 58  TPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQLHKEFNDHSIKDAS------ALDLQRSAA 111

Query: 121 SSSGVIGRSMNE---------MQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQ 171
           SSSG+I RSMN+         MQMEVQRRLHEQLEVQRHLQLR EAQGKY+QS+LEKACQ
Sbjct: 112 SSSGMISRSMNDNSHMIYAIRMQMEVQRRLHEQLEVQRHLQLRTEAQGKYIQSLLEKACQ 171

Query: 172 TLASGETVTPASFKGTIGNQAVPDVGTMKDFCPPLNFSQFQDLNLYGGDQIDHLQQNMDR 231
           TLA  + +   S+KG IGNQ VPD+G MKDF  PLNF  FQDLN+YG  Q+D L  NMDR
Sbjct: 172 TLAGDQDLASGSYKG-IGNQGVPDMGAMKDFG-PLNFPPFQDLNIYGSGQLD-LLHNMDR 228

Query: 232 QSSLDHGFMQSN-DNICLGKKRPSPYNGGSGTGKSPLMWSDDLRLQDLATP-PCIGPQDD 289
             SLD GFM +N D+ICLGKKR +PY   +G+GKSPL+WSDDLRLQDL +   C+GPQDD
Sbjct: 229 -PSLD-GFMSNNHDDICLGKKRTNPY---AGSGKSPLIWSDDLRLQDLGSGLSCLGPQDD 283

Query: 290 PFKGDQIQIAPP----SNDLDSISDIYETKPVLSGDAVSSEKKFEASSAKLERPSPRRTP 345
           P KGDQIQIAPP      DLDS+S +Y TKPV  GDA+  EKK EA SAK ERPSPRR P
Sbjct: 284 PLKGDQIQIAPPLMDSGTDLDSLSGLYGTKPVHQGDAL-DEKKLEA-SAKTERPSPRRAP 341

Query: 346 ISTERMNPAMMNTGGMQQGRNSPYG 370
           ++ +RM+P M+NTG M QGRNSP+G
Sbjct: 342 LAADRMSP-MINTGVMPQGRNSPFG 365

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736106|emb|CBI24144.3| unnamed protein product [Vitis vinifera]

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 268/375 (71%), Positives = 295/375 (78%), Gaps = 51/375 (13%)

Query: 1   MFQHHKKPSSMNSHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKA 60
           MF HHKKPS+MNSH DRP+CVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKA
Sbjct: 1   MF-HHKKPSTMNSH-DRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKA 58

Query: 61  TPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGKLAGERRGLDLQRNTA 120
           TPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKD         L+LQRN A
Sbjct: 59  TPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDAS------ALELQRNIA 112

Query: 121 SSSGVIGRSMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETVT 180
           SSSGV+ R+ NEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQ+ILEKACQTLA GE + 
Sbjct: 113 SSSGVMSRNTNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQTILEKACQTLA-GENMA 171

Query: 181 PASFKGTIGNQAVPDVGTMKDFCPPLNFSQFQDLNLYGGDQIDHLQQNMDRQSSLDHGFM 240
             ++KG IGNQ VPD+G MKDF   LNF   QDLN+YGGDQ+D LQQ+MDR  SLD GF+
Sbjct: 172 LGNYKG-IGNQGVPDMGAMKDFGSSLNFPSLQDLNIYGGDQLD-LQQSMDR--SLD-GFI 226

Query: 241 QSNDNICLGKKRPSPYNGGSGTGKSPLMWSDDLRLQDLATPPCIGPQDDPFKGDQIQIAP 300
           Q+ +N+CLGKKRPSPY+G                             +DPFKGDQIQIAP
Sbjct: 227 QNTENMCLGKKRPSPYSG-----------------------------NDPFKGDQIQIAP 257

Query: 301 PS----NDLDSISDIYETKPVLSGDAVSSEKKFEAS-SAKLERPSPRRTPISTERMNPAM 355
           PS     D+DSISDIYETKP+LSGD +  EKKF+ S SAKL RPSPRR P+ T+RMNP M
Sbjct: 258 PSMDRGADMDSISDIYETKPILSGDPM-GEKKFDGSGSAKLGRPSPRRAPLPTDRMNP-M 315

Query: 356 MNTGGMQQGRNSPYG 370
           +N G M QGR+S YG
Sbjct: 316 INAGAMPQGRSS-YG 329

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|311780285|gb|ADQ08683.1| IPN2 [Lotus japonicus]

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 267/375 (71%), Positives = 300/375 (80%), Gaps = 34/375 (9%)

Query: 6   KKPSSMNSHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTI 65
           KKPS+MNSH DRP+CVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTI
Sbjct: 8   KKPSTMNSH-DRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTI 66

Query: 66  MRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGKLAGERRGLDLQRNTASSSGV 125
           MRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDG  A     L+LQRNTASSS +
Sbjct: 67  MRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRAS---ALELQRNTASSSAM 123

Query: 126 IGRSMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETVTPASFK 185
           IGR+MNEMQ+EVQRRLHEQLEVQ+HLQLRIEAQGKYMQSILEKA QTLA     + A+  
Sbjct: 124 IGRNMNEMQIEVQRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYQTLAGENMASAATNL 183

Query: 186 GTIGNQAVPDVGTMKDFCPPLNFSQFQDLNLYGGDQIDH--LQQNMDRQSSLDHGFMQSN 243
             IG Q +PD+G MK+F  PL FS FQDL+LYGG   D   LQQNM++   LD GFM  N
Sbjct: 184 KGIGPQTIPDMGIMKEFGSPLGFS-FQDLDLYGGGGGDQLELQQNMEK-PPLD-GFMPMN 240

Query: 244 -DNICLGKKRPSPYNGGSGTGKSPLMWSDDLRLQDLATPPCIGPQDDPFKGD---QIQIA 299
            +N+CLGKKRP+PY+G +  GKSPLMWSDDLRLQDL +  C+  QDDPFKGD   QIQIA
Sbjct: 241 HENLCLGKKRPNPYSGNN--GKSPLMWSDDLRLQDLGS--CL--QDDPFKGDHHHQIQIA 294

Query: 300 PPSND----LDSISDIYETKPVLSGDAVSSEKKFEASSAKLERPSPRRTPISTERMNPAM 355
           PPS D    +D +S+IY++KP         EKKF+A S KLERPSPRR P+  ERM+P M
Sbjct: 295 PPSLDRGTEMDPMSEIYDSKP--------EEKKFDA-SMKLERPSPRRAPLG-ERMSP-M 343

Query: 356 MNTGGMQQGRNSPYG 370
           + TG M QGR+SP+G
Sbjct: 344 ITTGTMAQGRSSPFG 358

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556674|ref|XP_003546648.1| PREDICTED: myb family transcription factor APL-like [Glycine max]

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 249/373 (66%), Positives = 291/373 (78%), Gaps = 33/373 (8%)

Query: 6   KKPSSMNSHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTI 65
           KKPS+MNSH DR +CVQGDSGLVLTTDPKPRLRWTVELHERFVDAV QLGGPDKATPKTI
Sbjct: 8   KKPSTMNSH-DRSMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTI 66

Query: 66  MRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGKLAGERRGLDLQRNTASSSGV 125
           MRVMGVKGLTLYHLKSHLQKFRLGKQPHK+FNDHSIKDG  A     L+LQRN  SSS +
Sbjct: 67  MRVMGVKGLTLYHLKSHLQKFRLGKQPHKDFNDHSIKDGMRAS---ALELQRNIGSSSAM 123

Query: 126 IGRSMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETVTPASFK 185
           IGR+MNEMQMEVQRRLHEQLEVQ++LQLRIEAQGKYMQSILEKA  TLA GE +   + K
Sbjct: 124 IGRNMNEMQMEVQRRLHEQLEVQKNLQLRIEAQGKYMQSILEKAYHTLA-GENMA-TNMK 181

Query: 186 GTIGNQAVPDVGTMKDFCPPLNFSQFQDLNLYG-GDQIDHLQQNMDRQSSLDHGFMQSND 244
           G        ++G MK+F   LN+  FQDLN+Y  GDQ             LD GFM SN+
Sbjct: 182 GMGAPLGTTEMGVMKEFG-SLNYPSFQDLNIYASGDQ------------QLD-GFMPSNN 227

Query: 245 N---ICLGKKRPS-PYNGGSGTGKSPLMWSDDLRLQDLATP-PCIGPQDDPFKGD-QIQI 298
           N   + +GKKRP+ PY   SG+GKSPL+WSDDLRLQDL T   CI PQDDPFKGD ++QI
Sbjct: 228 NNETLFVGKKRPNCPY---SGSGKSPLIWSDDLRLQDLGTASSCISPQDDPFKGDHKVQI 284

Query: 299 APPSNDLDSISDIYETKP-VLSGDAVSSEKKFEASSAKLERPSPRRTPISTERMNPAMMN 357
           +PPS D D IS+IY+TKP +L G++VS + KF+A S K+ERPSP+R+P+  +R +P M+N
Sbjct: 285 SPPSMDSDPISEIYDTKPMILHGESVSDQNKFDA-SMKVERPSPKRSPLQPDRTSP-MIN 342

Query: 358 TGGMQQGRNSPYG 370
           +  + QGR+SP+G
Sbjct: 343 SSSVAQGRSSPFG 355

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	370
TAIR|locus:2206415	358	APL "ALTERED PHLOEM DEVELOPMEN	0.924	0.955	0.603	1.7e-100
TAIR|locus:2087740	235	AT3G12730 [Arabidopsis thalian	0.391	0.617	0.712	5.6e-52
TAIR|locus:2093726	298	AT3G24120 [Arabidopsis thalian	0.394	0.489	0.683	2.3e-48
TAIR|locus:2119425	295	UNE16 "unfertilized embryo sac	0.397	0.498	0.679	3.3e-47
TAIR|locus:2172394	402	MYR1 "myb-related protein 1" [	0.556	0.512	0.508	1e-43
TAIR|locus:2095933	394	MYR2 [Arabidopsis thaliana (ta	0.405	0.380	0.608	1.7e-43
TAIR|locus:2026739	337	AT1G69580 [Arabidopsis thalian	0.394	0.433	0.530	5.5e-38
TAIR|locus:2045761	286	AT2G01060 [Arabidopsis thalian	0.389	0.503	0.559	6.3e-37
TAIR|locus:2157146	264	AT5G45580 [Arabidopsis thalian	0.394	0.553	0.487	9.5e-34
TAIR|locus:2139865	409	PHR1 "phosphate starvation res	0.454	0.410	0.435	7.9e-30

TAIR|locus:2206415 APL "ALTERED PHLOEM DEVELOPMENT" [Arabidopsis thaliana (taxid:3702)]

 Score = 997 (356.0 bits), Expect = 1.7e-100, P = 1.7e-100
 Identities = 233/386 (60%), Positives = 270/386 (69%)

Query:     1 MFQHHKKPSSMN-SHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDK 59
             MF H KKPSSMN S+ +R +CVQGDSGLVLTTDPKPRLRWTVELHERFVDAV QLGGPDK
Sbjct:     1 MF-HAKKPSSMNGSYENRAMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDK 59

Query:    60 ATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGKLAGERRGLDLQRNT 119
             ATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKE+ DHS K+G  A     +D+QRN 
Sbjct:    60 ATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEYGDHSTKEGSRAS---AMDIQRNV 116

Query:   120 ASSSGVIGRSMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETV 179
             ASSSG++ R+MNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILE+ACQTLA GE +
Sbjct:   117 ASSSGMMSRNMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILERACQTLA-GENM 175

Query:   180 TPAS--------FKGTIGNQAVPD-VGTMKDFCPPLNFSQFQDLNLYGG--DQI-DHLQQ 227
               A+        +KG +G+ ++   VG       PL+F  FQDLN+YG   DQ+ DH   
Sbjct:   176 AAATAAAAVGGGYKGNLGSSSLSAAVGPPPH---PLSFPPFQDLNIYGNTTDQVLDH--H 230

Query:   228 NMDRQSSLDH--GFMQSNDNICLGKKRPSPYNGGSGTGKSPLMWSDDLRLQDLATPPCIG 285
             N   Q+  +H  G   ++ NI LGKKRP+P N G+   K  LMWSD  +  DL+    I 
Sbjct:   231 NFHHQNIENHFTGNNAADTNIYLGKKRPNP-NFGNDVRKGLLMWSD--QDHDLSANQSI- 286

Query:   286 PQDDPFKGDQIQIAPP-SNDLDSISDIYETKPVLSGDXXXXXXXXXXXXXXXXRPSPRRT 344
               DD  +  QIQ+A   S DLDS+S+IYE K  LSGD                RPSPRR+
Sbjct:   287 --DDEHR-IQIQMATHVSTDLDSLSEIYERKSGLSGDEGNNGGKLLE------RPSPRRS 337

Query:   345 PISTERMNPAMMNTGGMQQGRNSPYG 370
             P+S   MNP     GG+ QGRNSP+G
Sbjct:   338 PLSP-MMNP----NGGLIQGRNSPFG 358

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010088 "phloem development" evidence=IMP

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2087740 AT3G12730 [Arabidopsis thaliana (taxid:3702)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 109/153 (71%), Positives = 127/153 (83%)

Query:    25 SGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQ 84
             SGLVLTTDPKPRLRWT ELHERFVDAVT LGGP+KATPKTIMRVMGVKGLTLYHLKSHLQ
Sbjct:    14 SGLVLTTDPKPRLRWTTELHERFVDAVTHLGGPEKATPKTIMRVMGVKGLTLYHLKSHLQ 73

Query:    85 KFRLGKQPHKEFN-DHSI--KDGKLAGERRGLDLQRNTASSSG--VIGRSMNEMQMEVQR 139
             KFRLGKQPHKE + +HSI  +D   A     LDL+RN   ++   +IGR+MNEMQMEVQR
Sbjct:    74 KFRLGKQPHKEHSQNHSICIRDTNRASM---LDLRRNAVFTTSPLIIGRNMNEMQMEVQR 130

Query:   140 RLHEQLEVQRHLQLRIEAQGKYMQSILEKACQT 172
             R+ E++ ++R +  RI AQGKYM+S+LEKAC+T
Sbjct:   131 RIEEEVVIERQVNQRIAAQGKYMESMLEKACET 163

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2093726 AT3G24120 [Arabidopsis thaliana (taxid:3702)]

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 110/161 (68%), Positives = 122/161 (75%)

Query:    23 GDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSH 82
             GD+ LVLTTDPKPRLRWT ELHERFVDAVTQLGGPDKATPKTIMR MGVKGLTLYHLKSH
Sbjct:    30 GDACLVLTTDPKPRLRWTTELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSH 89

Query:    83 LQKFRLGKQPHKEFNDHSIKDGKLAGERRGLDLQRNTASSSGVIGRSMNE---------M 133
             LQKFRLG+Q  KE  ++S KD    GE +  D   ++ SS  +  +  NE          
Sbjct:    90 LQKFRLGRQAGKESTENS-KDASCVGESQ--DTGSSSTSSMRMAQQEQNEGYQVTEALRA 146

Query:   134 QMEVQRRLHEQLE---VQRHLQLRIEAQGKYMQSILEKACQ 171
             QMEVQRRLH+QLE   VQR LQLRIEAQGKY+QSILEKAC+
Sbjct:   147 QMEVQRRLHDQLEYGQVQRRLQLRIEAQGKYLQSILEKACK 187

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2119425 UNE16 "unfertilized embryo sac 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
 Identities = 110/162 (67%), Positives = 121/162 (74%)

Query:    24 DSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHL 83
             D+ LVLTTDPKPRLRWT ELHERFVDAVTQLGGPDKATPKTIMR MGVKGLTLYHLKSHL
Sbjct:    27 DACLVLTTDPKPRLRWTSELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHL 86

Query:    84 QKFRLGKQPHKEFNDHSIKDGKLAGERRGLDLQRNTASSSGVIGRSMNEM---------Q 134
             QKFRLG+Q  KE  D+S KD     E +  D   ++ SS  +  +  NE          Q
Sbjct:    87 QKFRLGRQSCKESIDNS-KDVSCVAESQ--DTGSSSTSSLRLAAQEQNESYQVTEALRAQ 143

Query:   135 MEVQRRLHEQLE---VQRHLQLRIEAQGKYMQSILEKACQTL 173
             MEVQRRLHEQLE   VQR LQLRIEAQGKY+QSILEKAC+ +
Sbjct:   144 MEVQRRLHEQLEYTQVQRRLQLRIEAQGKYLQSILEKACKAI 185

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IMP

TAIR|locus:2172394 MYR1 "myb-related protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 115/226 (50%), Positives = 144/226 (63%)

Query:    23 GDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSH 82
             GDSGL+L+TD KPRL+WT +LHERFV+AV QLGG DKATPKTIM+VMG+ GLTLYHLKSH
Sbjct:    34 GDSGLILSTDAKPRLKWTPDLHERFVEAVNQLGGGDKATPKTIMKVMGIPGLTLYHLKSH 93

Query:    83 LQKFRLGKQPHKEFNDHSIKDGKLAGERRGLDLQRNTASSSGVIGR--SMN-------EM 133
             LQK+RL K  + + N    K   +            + S S  IG   SMN       +M
Sbjct:    94 LQKYRLSKNLNGQANSSLNKTSVMTMVEENPPEVDESHSESLSIGPQPSMNLPISDALQM 153

Query:   134 QMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETVTPASFKGTIG--NQ 191
             Q+EVQRRLHEQLEVQRHLQLRIEAQGKY+QSILEKA +TL   + +  A  + T    ++
Sbjct:   154 QIEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQETLGR-QNLGAAGIEATKAQLSE 212

Query:   192 AVPDVGTMKDFCPPLNFSQFQDL-NLYGGDQIDHLQQNMDRQSSLD 236
              V  V    D+ P  +F + ++L NL+       +Q+     SSLD
Sbjct:   213 LVSKVSA--DY-PDSSFLEPKELQNLHH----QQMQKTYPPNSSLD 251

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2095933 MYR2 [Arabidopsis thaliana (taxid:3702)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 98/161 (60%), Positives = 121/161 (75%)

Query:    23 GDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSH 82
             GDSGL+L+TD KPRL+WT +LHERF++AV QLGG DKATPKTIM+VMG+ GLTLYHLKSH
Sbjct:    34 GDSGLILSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTIMKVMGIPGLTLYHLKSH 93

Query:    83 LQKFRLGKQPHKEFNDHSIKDGKLAG-ERRGLD---LQRNTAS------SSGVIGRSMNE 132
             LQK+RL K  + + N+   K G +   E +  D   +Q    S       +  IG ++ +
Sbjct:    94 LQKYRLSKNLNGQANNSFNKIGIMTMMEEKTPDADEIQSENLSIGPQPNKNSPIGEAL-Q 152

Query:   133 MQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTL 173
             MQ+EVQRRLHEQLEVQRHLQLRIEAQGKY+QS+LEKA +TL
Sbjct:   153 MQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQSVLEKAQETL 193

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2026739 AT1G69580 [Arabidopsis thaliana (taxid:3702)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 86/162 (53%), Positives = 116/162 (71%)

Query:    27 LVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKF 86
             LVL+TD KPRL+WT +LH +F++AV QLGGP+KATPK +M+VM + GLTLYHLKSHLQK+
Sbjct:    27 LVLSTDAKPRLKWTCDLHHKFIEAVNQLGGPNKATPKGLMKVMEIPGLTLYHLKSHLQKY 86

Query:    87 RLGKQPHKEFNDHSIK------DGKLAGERRGLDLQ--------RNTASSSGVIGRSMNE 132
             RLGK    +F+D+ ++      + ++  +    DL+         N A   G+      +
Sbjct:    87 RLGKS--MKFDDNKLEVSSASENQEVESKNDSRDLRGCSVTEENSNPAKDRGLQITEALQ 144

Query:   133 MQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLA 174
             MQMEVQ++LHEQ+EVQRHLQ++IEAQGKY+QS+L KA QTLA
Sbjct:   145 MQMEVQKKLHEQIEVQRHLQVKIEAQGKYLQSVLMKAQQTLA 186

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA

TAIR|locus:2045761 AT2G01060 [Arabidopsis thaliana (taxid:3702)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 85/152 (55%), Positives = 107/152 (70%)

Query:    34 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPH 93
             K RLRWT ELHERFVDAV QLGGPD+ATPK ++RVMGV+GLT+YH+KSHLQK+RL K   
Sbjct:    15 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAK--- 71

Query:    94 KEFNDHSIKDGKLAGERRGLDLQRNTASSSGVIGRSMNEMQMEVQRRLHEQLEVQRHLQL 153
               +   S  +GK   ++   D+      SSG+      ++QMEVQ+RLHEQLEVQR LQL
Sbjct:    72 --YLPDSSSEGKKTDKKESGDMLSGLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQL 129

Query:   154 RIEAQGKYMQSILEKACQTLAS--GETVTPAS 183
             RIEAQGKY++ I+E+  Q L+   GE   P +
Sbjct:   130 RIEAQGKYLKKIIEEQ-QRLSGVLGEPSAPVT 160

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

TAIR|locus:2157146 AT5G45580 [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 80/164 (48%), Positives = 112/164 (68%)

Query:    28 VLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFR 87
             ++T DPKPRLRWT +LH+RFVDAV +LGG DKATPK+++++MG+KGLTLYHLKSHLQK+R
Sbjct:     1 MMTRDPKPRLRWTADLHDRFVDAVAKLGGADKATPKSVLKLMGLKGLTLYHLKSHLQKYR 60

Query:    88 LGKQPHKEFND-------------H--SIKDGKLAGERRGLDLQRNTASSSGVIGRSMNE 132
             LG+Q  K+ N              H  +   G ++ + R  + QR   S +     +M  
Sbjct:    61 LGQQQGKKQNRTEQNKENAGSSYVHFDNCSQGGISNDSRFDNHQRQ--SGNVPFAEAMRH 118

Query:   133 MQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASG 176
              Q++ Q+R  EQLEVQ+ LQ+R+EAQGKY+ ++LEKA ++L  G
Sbjct:   119 -QVDAQQRFQEQLEVQKKLQMRMEAQGKYLLTLLEKAQKSLPCG 161

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2139865 PHR1 "phosphate starvation response 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 81/186 (43%), Positives = 110/186 (59%)

Query:    34 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPH 93
             K R+RWT ELHE FV+AV  LGG ++ATPK ++++M V+GLT+YH+KSHLQK+R  +   
Sbjct:   225 KARMRWTPELHEAFVEAVNSLGGSERATPKGVLKIMKVEGLTIYHVKSHLQKYRTAR--- 281

Query:    94 KEFNDHSIKDGKLAGERRGLDLQRNTASS-SGVIG-RSMNEMQMEVQRRLHEQLEVQRHL 151
               +     + G  + ER+   L+  T+    G IG      +QMEVQ++LHEQLE+QR+L
Sbjct:   282 --YRPEPSETG--SPERKLTPLEHITSLDLKGGIGITEALRLQMEVQKQLHEQLEIQRNL 337

Query:   152 QLRIEAQGKYMQSILEKACQTLASGETVTPASF-------KGTIGNQAVPDVGTMKDFCP 204
             QLRIE QGKY+Q + EK    L  G   T  S        K T  ++ VP+  T K  C 
Sbjct:   338 QLRIEEQGKYLQMMFEKQNSGLTKGTASTSDSAAKSEQEDKKTADSKEVPEEETRK--CE 395

Query:   205 PLNFSQ 210
              L   Q
Sbjct:   396 ELESPQ 401

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0016036 "cellular response to phosphate starvation" evidence=IMP

GO:0055063 "sulfate ion homeostasis" evidence=IMP

GO:0007623 "circadian rhythm" evidence=IEP

GO:0071486 "cellular response to high light intensity" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SAK5	APL_ARATH	No assigned EC number	0.6025	0.9270	0.9581	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00002102001 SubName- Full=Chromosome chr19 scaffold_126, whole genome shotgun sequence; (359 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	370
TIGR01557	57	TIGR01557, myb_SHAQKYF, myb-like DNA-binding domai	1e-22
pfam14379	51	pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor,	4e-22
PLN03162	526	PLN03162, PLN03162, golden-2 like transcription fa	4e-09
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	3e-07

>gnl|CDD|130620 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domain, SHAQKYF class

 Score = 89.4 bits (222), Expect = 1e-22
 Identities = 33/57 (57%), Positives = 43/57 (75%)

Query: 34 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGK 90
          KPR+ WT +LH+RF+ AV +LGGPD ATPK I+ +M V GLT   + SHLQK+RL +
Sbjct: 1  KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ 57

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif. Length = 57

>gnl|CDD|206547 pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor, LHEQLE motif

 Score = 87.7 bits (218), Expect = 4e-22
 Identities = 35/42 (83%), Positives = 40/42 (95%)

Query: 133 MQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLA 174
           +QMEVQRRLHEQLEVQRHLQ+RIEAQGKY+Q ILEKA +TL+
Sbjct: 10  LQMEVQRRLHEQLEVQRHLQIRIEAQGKYLQEILEKAQKTLS 51

This family is found towards the C-terminus of Myb-CC type transcription factors, and carries a highly conserved LHEQLE sequence motif. Length = 51

>gnl|CDD|178707 PLN03162, PLN03162, golden-2 like transcription factor; Provisional

 Score = 57.9 bits (139), Expect = 4e-09
 Identities = 29/54 (53%), Positives = 39/54 (72%), Gaps = 1/54 (1%)

Query: 34  KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFR 87
           K ++ WT ELH RFV AV QLG  +KA P  I+ +MGV+ LT +++ SHLQK+R
Sbjct: 235 KAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYR 287

Length = 526

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 46.0 bits (110), Expect = 3e-07
 Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 5/52 (9%)

Query: 36 RLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFR 87
          R  WT E  E  ++AV + G  +      I + +   G T    K+    + 
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGN---WSKIAKHLP--GRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	370
PLN03162	526	golden-2 like transcription factor; Provisional	99.89
PF14379	51	Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE mot	99.88
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	99.85
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	97.29
smart00426	68	TEA TEA domain.	92.07
PF14379	51	Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE mot	90.73

>PLN03162 golden-2 like transcription factor; Provisional

Probab=99.89  E-value=1.1e-23  Score=208.76  Aligned_cols=61  Identities=48%  Similarity=0.759  Sum_probs=57.9

Q ss_pred             cCCCCCCccCCHHHHHHHHHHHHhhCCCCCCChhhHHHHhcCCCccHHHHHHhhhhhhcCCC
Q 017491           30 TTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQ   91 (370)
Q Consensus        30 s~~~KpRlrWT~ELH~rFV~AV~~LGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~~~   91 (370)
                      ...+|+||+||+|||++||+||++|| .++||||.||++|+|+|||++||||||||||+.++
T Consensus       231 ~g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk  291 (526)
T PLN03162        231 PGKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRR  291 (526)
T ss_pred             CCCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcc
Confidence            34678999999999999999999999 79999999999999999999999999999999875

>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif

Probab=99.88  E-value=6.7e-23  Score=153.71  Aligned_cols=50  Identities=74%  Similarity=0.922  Sum_probs=46.3

Q ss_pred             ccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhc
Q 017491          125 VIGRSMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLA  174 (370)
Q Consensus       125 ~~~~~~~~mQmEVQrRLHEQLEVQRhLQLRIEAQGKYLQsILEKAqetLa  174 (370)
                      +...+++++||||||||||||||||+||+|||||||||++|||+|+++++
T Consensus         2 ~~i~EALr~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ilek~~~~~s   51 (51)
T PF14379_consen    2 MQITEALRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQKALS   51 (51)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            44567889999999999999999999999999999999999999999874

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=99.85  E-value=1.4e-21  Score=148.20  Aligned_cols=56  Identities=59%  Similarity=0.976  Sum_probs=54.3

Q ss_pred             CCCccCCHHHHHHHHHHHHhhCCCCCCChhhHHHHhcCCCccHHHHHHhhhhhhcC
Q 017491           34 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLG   89 (370)
Q Consensus        34 KpRlrWT~ELH~rFV~AV~~LGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~   89 (370)
                      |+|++||+|+|++|++||+.||+.+.||||.|+++|++++||..||+|||||||+.
T Consensus         1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k   56 (57)
T TIGR01557         1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK   56 (57)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            78999999999999999999998899999999999999999999999999999985

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=97.29  E-value=0.00073  Score=48.38  Aligned_cols=48  Identities=33%  Similarity=0.434  Sum_probs=41.1

Q ss_pred             CccCCHHHHHHHHHHHHhhCCCCCCChhhHHHHhcCCCccHHHHHHhhhhhh
Q 017491           36 RLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFR   87 (370)
Q Consensus        36 RlrWT~ELH~rFV~AV~~LGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYR   87 (370)
                      |-.||+|=++.|++||.++|. +  .-+.|-+.|+ .+-|..++++|.++|+
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~-~--~W~~Ia~~~~-~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGK-D--NWKKIAKRMP-GGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTT-T--HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCC-c--HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence            568999999999999999992 1  4789999998 8999999999999985

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>smart00426 TEA TEA domain

Probab=92.07  E-value=0.16  Score=40.94  Aligned_cols=46  Identities=20%  Similarity=0.264  Sum_probs=30.3

Q ss_pred             cCCHHHHHHHHHHHHhhCCCCCCChh-hHHHH--------------hcCCCc--cHHHHHHhhhh
Q 017491           38 RWTVELHERFVDAVTQLGGPDKATPK-TIMRV--------------MGVKGL--TLYHLKSHLQK   85 (370)
Q Consensus        38 rWT~ELH~rFV~AV~~LGG~dkAtPK-~IL~l--------------M~V~GL--T~~hVKSHLQK   85 (370)
                      .|.++|-..|++|+...=  ...|=| .+...              -...|.  |..+|.||||.
T Consensus         5 vWp~~lE~Af~~aL~~~~--~~g~~kik~~~r~k~~gRNelIs~YI~~~tGk~Rt~KQVsShIQv   67 (68)
T smart00426        5 VWSPDIEQAFQEALAIYP--PCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQV   67 (68)
T ss_pred             cCcHHHHHHHHHHHHHcC--ccCcccchhhhcCcccchhHHHHHHHHHHhCCccchhhhcchhee
Confidence            699999999999998775  223322 12111              112444  78899999985

>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif

Probab=90.73  E-value=0.53  Score=36.18  Aligned_cols=34  Identities=35%  Similarity=0.441  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 017491          139 RRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTL  173 (370)
Q Consensus       139 rRLHEQLEVQRhLQLRIEAQGKYLQsILEKAqetL  173 (370)
                      --|..|+||||+|.=.+|.| |-||.=+|...+-|
T Consensus         6 EALr~QmEvQrrLhEQLEvQ-r~Lqlrieaqgkyl   39 (51)
T PF14379_consen    6 EALRMQMEVQRRLHEQLEVQ-RHLQLRIEAQGKYL   39 (51)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHH
Confidence            45788999999999999999 66776677655544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	370
1irz_A	64	Solution Structure Of Arr10-B Belonging To The Garp		7e-09

>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family Of Plant Myb-Related Dna Binding Motifs Of The Arabidopsis Response Regulators Length = 64

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 30 TTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLG 89
          T   KPR+ WT ELH +F+ AV  LG  ++A PK I+ +M V  LT  ++ SHLQKFR+ 
Sbjct: 1  TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	370
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	1e-24
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Length = 64

 Score = 94.2 bits (234), Expect = 1e-24
 Identities = 29/62 (46%), Positives = 40/62 (64%), Gaps = 1/62 (1%)

Query: 30 TTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLG 89
          T   KPR+ WT ELH +F+ AV  LG  ++A PK I+ +M V  LT  ++ SHLQKFR+ 
Sbjct: 1  TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59

Query: 90 KQ 91
           +
Sbjct: 60 LK 61

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 39/304 (12%), Positives = 87/304 (28%), Gaps = 93/304 (30%)

Query: 78  HLKSHLQKFRLGKQPHK------EFNDHSIKDGKLAGERRGLDLQRNTASSSGVIGRSMN 131
           H   H   F  G+  ++       F D  + +          D +        ++ +   
Sbjct: 1   HHHHHHMDFETGEHQYQYKDILSVFEDAFVDN---------FDCKDVQDMPKSILSKE-- 49

Query: 132 EMQMEVQRRLHEQLEVQRHLQL--RIEAQGK-----YMQSILEKACQTLASG---ETVTP 181
               E+   +  +  V   L+L   + ++ +     +++ +L    + L S    E   P
Sbjct: 50  ----EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105

Query: 182 ASFKGTIGNQAVPDVGTMKDFCPPLNFSQFQDLNLYGGDQI-DHLQQNMDRQSSLDHGFM 240
           +        Q        + F    N S+ Q        ++   L +            +
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVF-AKYNVSRLQPYL-----KLRQALLE------------L 147

Query: 241 QSNDNICLGKKRPSPYNGGSGTGKSPL------------------MW-------SDDLRL 275
           +   N+ +        +G  G+GK+ +                   W       S +  L
Sbjct: 148 RPAKNVLI--------DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199

Query: 276 QDLATPPCIGPQDDPFKGDQIQIAP-PSNDL-DSISDIYETKP------VLSGDAVSSEK 327
           + L         +   + D         + +   +  + ++KP      VL    V + K
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL--LNVQNAK 257

Query: 328 KFEA 331
            + A
Sbjct: 258 AWNA 261

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	370
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	99.95
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	88.78
2hzd_A	82	Transcriptional enhancer factor TEF-1; DNA-binding	88.11
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	85.87
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	85.63
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	82.38
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	81.57

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=99.95  E-value=6.1e-29  Score=191.99  Aligned_cols=61  Identities=48%  Similarity=0.792  Sum_probs=57.8

Q ss_pred             cCCCCCCccCCHHHHHHHHHHHHhhCCCCCCChhhHHHHhcCCCccHHHHHHhhhhhhcCCC
Q 017491           30 TTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQ   91 (370)
Q Consensus        30 s~~~KpRlrWT~ELH~rFV~AV~~LGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~~~   91 (370)
                      ++.+|+|++||+|||++||+||++|| .++||||.||++|+|+|||++||||||||||+.+.
T Consensus         1 ~~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~   61 (64)
T 1irz_A            1 TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALK   61 (64)
T ss_dssp             CCCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence            46799999999999999999999999 79999999999999999999999999999998753

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=88.78  E-value=1.4  Score=34.45  Aligned_cols=47  Identities=11%  Similarity=0.096  Sum_probs=39.1

Q ss_pred             CCCccCCHHHHHHHHHHHHhhCCCCCCChhhHHHHhcCCCccHHHHHHhhhhh
Q 017491           34 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKF   86 (370)
Q Consensus        34 KpRlrWT~ELH~rFV~AV~~LGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY   86 (370)
                      ..+-.||+|=+++|++||+.+|+    .=+.|-+.|  ++=|..+++.|-++|
T Consensus        16 ~~~~~WT~eEd~~Ll~~v~~~G~----~W~~IA~~v--~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           16 SAGREWTEQETLLLLEALEMYKD----DWNKVSEHV--GSRTQDECILHFLRL   62 (79)
T ss_dssp             CCSCCCCHHHHHHHHHHHHHSSS----CHHHHHHHH--SSCCHHHHHHHHTTS
T ss_pred             ccCCCcCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHHHHHh
Confidence            34678999999999999999993    235777776  478999999999887

>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}

Probab=88.11  E-value=0.39  Score=38.80  Aligned_cols=56  Identities=21%  Similarity=0.279  Sum_probs=36.1

Q ss_pred             CCCCccCCHHHHHHHHHHHHhhCCCCCCChhhHHHHh----c-----------C--CCccHHHHHHhhhhhhcCC
Q 017491           33 PKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVM----G-----------V--KGLTLYHLKSHLQKFRLGK   90 (370)
Q Consensus        33 ~KpRlrWT~ELH~rFV~AV~~LGG~dkAtPK~IL~lM----~-----------V--~GLT~~hVKSHLQKYRl~~   90 (370)
                      ++..=+|.++|-..|++|++..--....  |.+|..-    |           .  +-=|+.+|.||||.-+..+
T Consensus         3 ~~~e~vW~~~lE~aF~eaL~~yp~~g~~--k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~   75 (82)
T 2hzd_A            3 NDAEGVWSPDIEQSFQEALSIYPPCGRR--KIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRK   75 (82)
T ss_dssp             GGGSCCSCHHHHHHHHHHHHHSCSSSCC--CCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHH
T ss_pred             CCcCCcCCHHHHHHHHHHHHHcCCCCcc--ceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHH
Confidence            4556689999999999999887511112  2222111    1           1  2337889999999876543

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=85.87  E-value=2.2  Score=32.05  Aligned_cols=50  Identities=20%  Similarity=0.371  Sum_probs=40.4

Q ss_pred             CCCccCCHHHHHHHHHHHHhhCCCCCCChhhHHHHhcCCCccHHHHHHhhhhhhcC
Q 017491           34 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLG   89 (370)
Q Consensus        34 KpRlrWT~ELH~rFV~AV~~LGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~   89 (370)
                      ..+-.||+|=++.|+++|..+|-    .=+.|-+.  ++|=|-.+|+.|-++|-..
T Consensus         7 ~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~--~~~Rt~~q~k~r~~~~l~~   56 (72)
T 2cu7_A            7 GYSVKWTIEEKELFEQGLAKFGR----RWTKISKL--IGSRTVLQVKSYARQYFKN   56 (72)
T ss_dssp             SCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHH--HSSSCHHHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence            34668999999999999999993    34566665  4789999999998888543

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=85.63  E-value=1.5  Score=32.91  Aligned_cols=54  Identities=19%  Similarity=0.322  Sum_probs=40.4

Q ss_pred             CCCccCCHHHHHHHHHHHHhhCCCCCCChh---hHHHHhcCCCccHHHHHHhhhhhhcCC
Q 017491           34 KPRLRWTVELHERFVDAVTQLGGPDKATPK---TIMRVMGVKGLTLYHLKSHLQKFRLGK   90 (370)
Q Consensus        34 KpRlrWT~ELH~rFV~AV~~LGG~dkAtPK---~IL~lM~V~GLT~~hVKSHLQKYRl~~   90 (370)
                      ..+-.||+|=++.|+++|..+| .+...|.   .|-+.|  +|=|..+|+.|-++|-...
T Consensus         6 ~~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~~   62 (75)
T 2yum_A            6 SGNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIKL   62 (75)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGGG
T ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHHH
Confidence            3455899999999999999999 2221123   454554  7899999999999996543

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=82.38  E-value=2.4  Score=43.36  Aligned_cols=52  Identities=27%  Similarity=0.390  Sum_probs=43.8

Q ss_pred             CCCccCCHHHHHHHHHHHHhhCCCCCCChhhHHHHhcCCCccHHHHHHhhhhhhcCCC
Q 017491           34 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQ   91 (370)
Q Consensus        34 KpRlrWT~ELH~rFV~AV~~LGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~~~   91 (370)
                      +..-+||+|=|..|++||.+.|-    .=+.|-+.++-.  |..+|++|.++||....
T Consensus       378 ~~~~~WT~eE~~~f~~al~~yGk----dw~~IA~~VgTK--T~~Qvk~fy~~~kkr~~  429 (482)
T 2xag_B          378 KCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIGNK--SVVQVKNFFVNYRRRFN  429 (482)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHTT----CHHHHHHHHSSC--CHHHHHHHHHHTTTTTT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHhCCC--CHHHHHHHHHHHHHHhC
Confidence            55789999999999999999992    466788886654  99999999999988654

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=81.57  E-value=2.5  Score=39.83  Aligned_cols=54  Identities=22%  Similarity=0.286  Sum_probs=44.8

Q ss_pred             CCCCCCccCCHHHHHHHHHHHHhhCCCCCCChhhHHHHhcCCCccHHHHHHhhhhhhcCC
Q 017491           31 TDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGK   90 (370)
Q Consensus        31 ~~~KpRlrWT~ELH~rFV~AV~~LGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~~   90 (370)
                      +..+..-+||+|=++.|++|+...|-    .=..|-++  |++=|..+||+|-.+||...
T Consensus       128 ~~~k~s~~WTeEE~~lFleAl~kYGK----DW~~IAk~--VgTKT~~QcKnfY~~~kKRl  181 (235)
T 2iw5_B          128 VIQKCNARWTTEEQLLAVQAIRKYGR----DFQAISDV--IGNKSVVQVKNFFVNYRRRF  181 (235)
T ss_dssp             CCCCCCSSCCHHHHHHHHHHHHHHSS----CHHHHHHH--HSSCCHHHHHHHHHHTTTTT
T ss_pred             CCCccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHHh
Confidence            34567789999999999999999992    25677776  57889999999999998654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	370
d1irza_	64	a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th	3e-23

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 89.6 bits (222), Expect = 3e-23
 Identities = 29/59 (49%), Positives = 39/59 (66%), Gaps = 1/59 (1%)

Query: 30 TTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 88
          T   KPR+ WT ELH +F+ AV  LG  ++A PK I+ +M V  LT  ++ SHLQKFR+
Sbjct: 1  TAQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRV 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	370
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	99.92
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	90.95
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	85.96

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.92  E-value=2.4e-26  Score=175.39  Aligned_cols=61  Identities=48%  Similarity=0.783  Sum_probs=57.3

Q ss_pred             cCCCCCCccCCHHHHHHHHHHHHhhCCCCCCChhhHHHHhcCCCccHHHHHHhhhhhhcCCC
Q 017491           30 TTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQ   91 (370)
Q Consensus        30 s~~~KpRlrWT~ELH~rFV~AV~~LGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~~~   91 (370)
                      |..+|+|++||+|||++||+||++||+ +.||||.|+++|+|+|||+.||+|||||||+.+.
T Consensus         1 s~~kk~R~~WT~elH~~Fv~Av~~lG~-~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~l~   61 (64)
T d1irza_           1 TAQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVALK   61 (64)
T ss_dssp             CCCCCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCc-cccchHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence            467899999999999999999999985 8999999999999999999999999999998753

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.95  E-value=0.23  Score=34.83  Aligned_cols=48  Identities=21%  Similarity=0.412  Sum_probs=39.5

Q ss_pred             CccCCHHHHHHHHHHHHhhCCCCCCChhhHHHHhcCCCccHHHHHHhhhhhhcC
Q 017491           36 RLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLG   89 (370)
Q Consensus        36 RlrWT~ELH~rFV~AV~~LGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~   89 (370)
                      ..+||+|=++.|++||..+|.    .=..|-+.|  ++=|..+|++|-++|-..
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~ry~~~~~~   49 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQYFKN   49 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhcc----hHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence            468999999999999999993    345776665  578999999999988543

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.96  E-value=0.81  Score=30.69  Aligned_cols=44  Identities=20%  Similarity=0.273  Sum_probs=35.6

Q ss_pred             cCCHHHHHHHHHHHHhhCCCCCCChhhHHHHhcCCCccHHHHHHhhhhh
Q 017491           38 RWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKF   86 (370)
Q Consensus        38 rWT~ELH~rFV~AV~~LGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY   86 (370)
                      .||.|=+.+|++||...| ..  .=+.|-+.|+  +=|..+++.|-++|
T Consensus         3 ~Wt~eEd~~L~~~v~~~G-~~--nW~~Ia~~~~--~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCG-FG--NWQDVANQMC--TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTC-TT--CHHHHHHHHT--TSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHC-Cc--cHHHHHHHcC--CCCHHHHHHHHHHh
Confidence            499999999999999998 21  2456767765  66999999998887