Citrus Sinensis ID: 017498

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370
MISVAVIIIGFSADIGYILGDTKEHCSKFRGTRTRAAFVFVIGFWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLARS
cHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccccc
cEEEEEEEEccHHHHHHHccccccccccccccccEEEEEEEEEEEHEEcHHcccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccHEHccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHccccccc
MISVAVIIIGFSADIGYILGDTKEHCSKFRGTRTRAAFVFVIGFWLLDlanntvqgPARALLadlsgpdqrnsanAIFCSWMAVGNILgfsagasgswhrwfpfltsRACCAACGNLKAAFLVAVVFLTLCALVTIyfadevpltvnqpnhltdsapllddpqrnaiskskhdmpaapnangnkvesghesdANLKHISKkaedtngsfndgpGAVLVNLLTSLRHLPPAMHVVLIVMALTWlswfpfflfdtdwmgrevyhgdpkgndhevkfydQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVReysggiehgigaNQAIKVASLVVFTLLGFPLARS
MISVAVIIIGFSADIGYILGDTKEHCSKFRGTRTRAAFVFVIGFWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEdtngsfndGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLARS
MISVAVIIIGFSADIGYILGDTKEHCSKFRGTRTRAAFVFVIGFWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAfglllnsvvlgvssflIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLARS
**SVAVIIIGFSADIGYILGDTKEHCSKFRGTRTRAAFVFVIGFWLLDLANNTVQGPARALLADL*******SANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVTIYFADEVPLTVN******************************************************************GAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPL***
MISVAVIIIGFSADIGYILGDTKEHCSKFRGTRTRAAFVFVIGFWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKA********DGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLARS
MISVAVIIIGFSADIGYILGDTKEHCSKFRGTRTRAAFVFVIGFWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISK***********************ANLKHISKKAEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLARS
MISVAVIIIGFSADIGYILGDTKEHCSKFRGTRTRAAFVFVIGFWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVTIYFADEVPL********************************************************************PGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLARS
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoo
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MISVAVIIIGFSADIGYILGDTKEHCSKFRGTRTRAAFVFVIGFWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLARS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query370 2.2.26 [Sep-21-2011]
O80605594 Sucrose transport protein yes no 0.983 0.612 0.709 1e-154
Q6YK44595 Sucrose transport protein yes no 0.970 0.603 0.655 1e-141
B8AF63595 Sucrose transport protein N/A no 0.970 0.603 0.655 1e-141
Q10R54538 Sucrose transport protein no no 0.854 0.587 0.527 1e-106
Q9LKH3538 Sucrose transport protein N/A no 0.854 0.587 0.527 1e-106
A2X6E6535 Sucrose transport protein N/A no 0.840 0.581 0.467 1e-88
Q69JW3535 Sucrose transport protein no no 0.840 0.581 0.467 1e-88
Q948L0506 Sucrose transport protein no no 0.816 0.596 0.477 1e-87
Q944W2506 Sucrose transport protein N/A no 0.808 0.590 0.471 2e-85
A2ZN77501 Sucrose transport protein N/A no 0.805 0.594 0.382 2e-58
>sp|O80605|SUC3_ARATH Sucrose transport protein SUC3 OS=Arabidopsis thaliana GN=SUC3 PE=1 SV=1 Back     alignment and function desciption
 Score =  545 bits (1403), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 261/368 (70%), Positives = 305/368 (82%), Gaps = 4/368 (1%)

Query: 1   MISVAVIIIGFSADIGYILGDTKEHCSKFRGTRTRAAFVFVIGFWLLDLANNTVQGPARA 60
           MIS+AVIIIGFSADIGY+LGD+KEHCS F+GTRTRAA VF+IGFWLLDLANNTVQGPARA
Sbjct: 140 MISIAVIIIGFSADIGYLLGDSKEHCSTFKGTRTRAAVVFIIGFWLLDLANNTVQGPARA 199

Query: 61  LLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAA 120
           LLADLSGPDQRN+ANA+FC WMA+GNILGFSAGASG W  WFPFLTSRACCAACGNLKAA
Sbjct: 200 LLADLSGPDQRNTANAVFCLWMAIGNILGFSAGASGKWQEWFPFLTSRACCAACGNLKAA 259

Query: 121 FLVAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNA 180
           FL+AVVFLT+C LVTIYFA E+P T N+P  + DSAPLLDD Q   +  SK +      A
Sbjct: 260 FLLAVVFLTICTLVTIYFAKEIPFTSNKPTRIQDSAPLLDDLQSKGLEHSKLN---NGTA 316

Query: 181 NGNKVESGHESDANLKHISKKAEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMAL 240
           NG K E   E D + +  + + E  + ++ DGPG+VLVNLLTSLRHLPPAMH VLIVMAL
Sbjct: 317 NGIKYER-VERDTDEQFGNSENEHQDETYVDGPGSVLVNLLTSLRHLPPAMHSVLIVMAL 375

Query: 241 TWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLI 300
           TWLSWFPFFLFDTDWMGREVYHGDP G+   ++ YDQGVREGA GLLLNSVVLG+SSFLI
Sbjct: 376 TWLSWFPFFLFDTDWMGREVYHGDPTGDSLHMELYDQGVREGALGLLLNSVVLGISSFLI 435

Query: 301 EPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVF 360
           EPMC+ +G+R+VWA+SNF VFACMA TA+IS++S+ +   GIE+ +  N+  + A+++VF
Sbjct: 436 EPMCQRMGARVVWALSNFTVFACMAGTAVISLMSLSDDKNGIEYIMRGNETTRTAAVIVF 495

Query: 361 TLLGFPLA 368
            LLGFPLA
Sbjct: 496 ALLGFPLA 503
Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). Can also transport maltose at a lesser rate. May also transport biotin. Probably involved in carpel maturation that leads to pod shatter and seed dispersal.
Arabidopsis thaliana (taxid: 3702)
>sp|Q6YK44|SUT4_ORYSJ Sucrose transport protein SUT4 OS=Oryza sativa subsp. japonica GN=SUT4 PE=2 SV=1 Back     alignment and function description
>sp|B8AF63|SUT4_ORYSI Sucrose transport protein SUT4 OS=Oryza sativa subsp. indica GN=SUT4 PE=3 SV=1 Back     alignment and function description
>sp|Q10R54|SUT1_ORYSJ Sucrose transport protein SUT1 OS=Oryza sativa subsp. japonica GN=SUT1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LKH3|SUT1_ORYSI Sucrose transport protein SUT1 OS=Oryza sativa subsp. indica GN=SUT1 PE=3 SV=1 Back     alignment and function description
>sp|A2X6E6|SUT5_ORYSI Sucrose transport protein SUT5 OS=Oryza sativa subsp. indica GN=SUT5 PE=3 SV=1 Back     alignment and function description
>sp|Q69JW3|SUT5_ORYSJ Sucrose transport protein SUT5 OS=Oryza sativa subsp. japonica GN=SUT5 PE=1 SV=1 Back     alignment and function description
>sp|Q948L0|SUT3_ORYSJ Sucrose transport protein SUT3 OS=Oryza sativa subsp. japonica GN=SUT3 PE=2 SV=1 Back     alignment and function description
>sp|Q944W2|SUT3_ORYSI Sucrose transport protein SUT3 OS=Oryza sativa subsp. indica GN=SUT3 PE=3 SV=1 Back     alignment and function description
>sp|A2ZN77|SUT2_ORYSI Sucrose transport protein SUT2 OS=Oryza sativa subsp. indica GN=SUT2 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query370
21063927 607 sucrose transporter 2 [Citrus sinensis] 0.994 0.606 0.972 0.0
116008244 611 sucrose transporter 2B [Hevea brasiliens 0.991 0.600 0.797 1e-169
255558166 615 sucrose transport protein, putative [Ric 0.991 0.596 0.791 1e-169
125629442 639 Sucrose Transporter 2C [Hevea brasiliens 0.983 0.569 0.796 1e-168
321531556 597 sucrose transporter 5 [Populus tremula x 0.983 0.609 0.777 1e-167
224099731 605 sucrose proton symporter [Populus tricho 0.991 0.606 0.775 1e-166
225425752 612 PREDICTED: LOW QUALITY PROTEIN: sucrose 0.994 0.601 0.768 1e-165
296086401 535 unnamed protein product [Vitis vinifera] 0.994 0.687 0.768 1e-165
310877782 605 sucrose transporter [Vitis vinifera] 0.994 0.608 0.768 1e-165
321531558 601 sucrose transporter 6 [Populus tremula x 0.991 0.610 0.764 1e-165
>gi|21063927|gb|AAM29153.1| sucrose transporter 2 [Citrus sinensis] Back     alignment and taxonomy information
 Score =  731 bits (1887), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/369 (97%), Positives = 360/369 (97%), Gaps = 1/369 (0%)

Query: 1   MISVAVIIIGFSADIGYILGDTKEHCSKFRGTRTRAAFVFVIGFWLLDLANNTVQGPARA 60
           MISVAVIIIGFSADIGYILGDTKEHCSKFRGTRTRAAFVFVIGFWLLDLANNTVQGPARA
Sbjct: 147 MISVAVIIIGFSADIGYILGDTKEHCSKFRGTRTRAAFVFVIGFWLLDLANNTVQGPARA 206

Query: 61  LLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAA 120
           LLADLSGPDQRNSANAI CSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAA
Sbjct: 207 LLADLSGPDQRNSANAILCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAA 266

Query: 121 FLVAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNA 180
           FLVAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQR AISKSKHDMPAAPNA
Sbjct: 267 FLVAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRTAISKSKHDMPAAPNA 326

Query: 181 NGNKVESGHESDANLKHISKKAEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMAL 240
           NGNKVESGHE DANLKHISKKAED NGSFNDGPGAVLVNLLTSLRHLPPAMHVVL+VMAL
Sbjct: 327 NGNKVESGHERDANLKHISKKAEDPNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLVVMAL 386

Query: 241 TWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLI 300
           TWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLI
Sbjct: 387 TWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLI 446

Query: 301 EPMCRWIGSRLVWAISNFIVFACMATTAIISVISVRE-YSGGIEHGIGANQAIKVASLVV 359
           EPMCRWIGSRLVWAISNFIVFACMATTAIISVISVR     GIEHGIGANQAIKVASLVV
Sbjct: 447 EPMCRWIGSRLVWAISNFIVFACMATTAIISVISVRRNILEGIEHGIGANQAIKVASLVV 506

Query: 360 FTLLGFPLA 368
           FTLLGFPLA
Sbjct: 507 FTLLGFPLA 515

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|116008244|gb|ABJ51932.1| sucrose transporter 2B [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|255558166|ref|XP_002520110.1| sucrose transport protein, putative [Ricinus communis] gi|223540602|gb|EEF42165.1| sucrose transport protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|125629442|emb|CAM33449.1| Sucrose Transporter 2C [Hevea brasiliensis subsp. brasiliensis] Back     alignment and taxonomy information
>gi|321531556|gb|ADW94618.1| sucrose transporter 5 [Populus tremula x Populus alba] Back     alignment and taxonomy information
>gi|224099731|ref|XP_002311596.1| sucrose proton symporter [Populus trichocarpa] gi|222851416|gb|EEE88963.1| sucrose proton symporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225425752|ref|XP_002276748.1| PREDICTED: LOW QUALITY PROTEIN: sucrose transport protein SUC3 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296086401|emb|CBI31990.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|310877782|gb|ADP37122.1| sucrose transporter [Vitis vinifera] Back     alignment and taxonomy information
>gi|321531558|gb|ADW94619.1| sucrose transporter 6 [Populus tremula x Populus alba] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query370
TAIR|locus:2056675594 SUT2 "AT2G02860" [Arabidopsis 0.983 0.612 0.671 5.6e-132
UNIPROTKB|Q10R54538 SUT1 "Sucrose transport protei 0.397 0.273 0.653 3.4e-94
UNIPROTKB|Q69JW3535 SUT5 "Sucrose transport protei 0.389 0.269 0.579 1.2e-83
TAIR|locus:2024422510 SUT4 "AT1G09960" [Arabidopsis 0.370 0.268 0.455 8.4e-55
TAIR|locus:2016069513 SUC1 "AT1G71880" [Arabidopsis 0.421 0.304 0.395 1.9e-53
TAIR|locus:2016074512 SUC5 "AT1G71890" [Arabidopsis 0.367 0.265 0.419 2.7e-53
TAIR|locus:2160732491 SUC9 "AT5G06170" [Arabidopsis 0.367 0.276 0.419 5.3e-53
TAIR|locus:2064253492 SUC8 "AT2G14670" [Arabidopsis 0.367 0.276 0.384 4.7e-52
TAIR|locus:2158352492 SUC6 "AT5G43610" [Arabidopsis 0.367 0.276 0.391 1.2e-51
TAIR|locus:2028947491 SUC7 "AT1G66570" [Arabidopsis 0.367 0.276 0.377 1.4e-51
TAIR|locus:2056675 SUT2 "AT2G02860" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1294 (460.6 bits), Expect = 5.6e-132, P = 5.6e-132
 Identities = 247/368 (67%), Positives = 290/368 (78%)

Query:     1 MISVAVIIIGFSADIGYILGDTKEHCSKFRGTRTRAAFVFVIGFWLLDLANNTVQGPARA 60
             MIS+AVIIIGFSADIGY+LGD+KEHCS F+GTRTRAA VF+IGFWLLDLANNTVQGPARA
Sbjct:   140 MISIAVIIIGFSADIGYLLGDSKEHCSTFKGTRTRAAVVFIIGFWLLDLANNTVQGPARA 199

Query:    61 LLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAA 120
             LLADLSGPDQRN+ANA+FC WMA+GNILGFSAGASG W  WFPFLTSRACCAACGNLKAA
Sbjct:   200 LLADLSGPDQRNTANAVFCLWMAIGNILGFSAGASGKWQEWFPFLTSRACCAACGNLKAA 259

Query:   121 FLVAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNA 180
             FL+AVVFLT+C LVTIYFA E+P T N+P  + DSAPLLDD Q   +  SK +   A   
Sbjct:   260 FLLAVVFLTICTLVTIYFAKEIPFTSNKPTRIQDSAPLLDDLQSKGLEHSKLNNGTA--- 316

Query:   181 NGNKVESGHESDANLKHISKKAEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMAL 240
             NG K E   E D + +  + + E  + ++ DGPG+VLVNLLTSLRHLPPAMH VLIVMAL
Sbjct:   317 NGIKYERV-ERDTDEQFGNSENEHQDETYVDGPGSVLVNLLTSLRHLPPAMHSVLIVMAL 375

Query:   241 TWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAXXXXXXXXXXXXXXXXI 300
             TWLSWFPFFLFDTDWMGREVYHGDP G+   ++ YDQGVREGA                I
Sbjct:   376 TWLSWFPFFLFDTDWMGREVYHGDPTGDSLHMELYDQGVREGALGLLLNSVVLGISSFLI 435

Query:   301 EPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVF 360
             EPMC+ +G+R+VWA+SNF VFACMA TA+IS++S+ +   GIE+ +  N+  + A+++VF
Sbjct:   436 EPMCQRMGARVVWALSNFTVFACMAGTAVISLMSLSDDKNGIEYIMRGNETTRTAAVIVF 495

Query:   361 TLLGFPLA 368
              LLGFPLA
Sbjct:   496 ALLGFPLA 503
GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM;NAS
GO:0005887 "integral to plasma membrane" evidence=IEA
GO:0008506 "sucrose:hydrogen symporter activity" evidence=ISS
GO:0008515 "sucrose transmembrane transporter activity" evidence=IEA;IGI;IDA
GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS
GO:0015770 "sucrose transport" evidence=IEA;NAS;TAS
GO:0016020 "membrane" evidence=ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0009611 "response to wounding" evidence=IEP;RCA
GO:0090406 "pollen tube" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0009620 "response to fungus" evidence=RCA
GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA
GO:0009753 "response to jasmonic acid stimulus" evidence=RCA
GO:0010200 "response to chitin" evidence=RCA
UNIPROTKB|Q10R54 SUT1 "Sucrose transport protein SUT1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q69JW3 SUT5 "Sucrose transport protein SUT5" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2024422 SUT4 "AT1G09960" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016069 SUC1 "AT1G71880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016074 SUC5 "AT1G71890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2160732 SUC9 "AT5G06170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2064253 SUC8 "AT2G14670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158352 SUC6 "AT5G43610" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028947 SUC7 "AT1G66570" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O80605SUC3_ARATHNo assigned EC number0.70920.98370.6127yesno
Q6YK44SUT4_ORYSJNo assigned EC number0.65500.97020.6033yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_VIII001323
sucrose proton symporter (605 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query370
TIGR01301477 TIGR01301, GPH_sucrose, GPH family sucrose/H+ symp 1e-92
>gnl|CDD|233349 TIGR01301, GPH_sucrose, GPH family sucrose/H+ symporter Back     alignment and domain information 
 Score =  285 bits (730), Expect = 1e-92
 Identities = 140/372 (37%), Positives = 201/372 (54%), Gaps = 65/372 (17%)

Query: 2   ISVAVIIIGFSADIGYILGDTKEHCSKFRGTRTRAAFVFVIGFWLLDLANNTVQGPARAL 61
           ++ AVI+IGF+ADIG++ GD  +     + T+ RA  VFV+GFW+LD+ANN +QGP RA 
Sbjct: 84  VAFAVILIGFAADIGHLFGDNLD-----KKTKPRAIIVFVVGFWILDVANNMLQGPCRAF 138

Query: 62  LADLSGPDQRNS--ANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKA 119
           LADL+G D R +  ANA F  +MA+GN+LG++AGA    ++ FPF  + AC  +C NLK+
Sbjct: 139 LADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKS 198

Query: 120 AFLVAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPN 179
            FL+ ++ L +   + +    E PL  +            D     A   SKH       
Sbjct: 199 CFLIDIILLAILTYIALSAVKENPLIGSD-----------DFINSEAAPPSKH------- 240

Query: 180 ANGNKVESGHESDANLKHISKKAEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMA 239
                                           G  A    L  + ++LP  + ++L+V  
Sbjct: 241 --------------------------------GEEAFFGELFGAFKYLPRPVWILLLVTC 268

Query: 240 LTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFL 299
           L W++WFPF LFDTDWMGREVY G       +   YD GVR GAFGL+LNSVVLG++S  
Sbjct: 269 LNWIAWFPFILFDTDWMGREVYGGSVN----QGAKYDDGVRAGAFGLMLNSVVLGITSIG 324

Query: 300 IEPMCRWIGS-RLVWAISNFIVFACMATTAIISVI--SVREYSGGIEHGIGANQAIKVAS 356
           +E +CR  G+ + +W I N I+  C+A T +++ +  + R Y G  E        IK ++
Sbjct: 325 MEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESL-PPPTGIKASA 383

Query: 357 LVVFTLLGFPLA 368
           L+VF +LG PLA
Sbjct: 384 LIVFAILGIPLA 395

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. Length = 477

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 370
TIGR01301477 GPH_sucrose GPH family sucrose/H+ symporter. This 100.0
KOG0637498 consensus Sucrose transporter and related proteins 100.0
PF13347428 MFS_2: MFS/sugar transport protein 99.7
PRK10429 473 melibiose:sodium symporter; Provisional 99.45
TIGR00792437 gph sugar (Glycoside-Pentoside-Hexuronide) transpo 99.44
PRK09669444 putative symporter YagG; Provisional 99.22
PRK11462 460 putative transporter; Provisional 99.21
COG2211 467 MelB Na+/melibiose symporter and related transport 99.2
TIGR00901356 2A0125 AmpG-related permease. 99.08
TIGR00900365 2A0121 H+ Antiporter protein. 99.0
TIGR00710385 efflux_Bcr_CflA drug resistance transporter, Bcr/C 98.92
PRK09848448 glucuronide transporter; Provisional 98.9
PRK10473392 multidrug efflux system protein MdtL; Provisional 98.84
PRK11551406 putative 3-hydroxyphenylpropionic transporter MhpT 98.76
TIGR00893399 2A0114 d-galactonate transporter. 98.74
TIGR00899375 2A0120 sugar efflux transporter. This family of pr 98.72
PF07690352 MFS_1: Major Facilitator Superfamily; InterPro: IP 98.72
PRK11102377 bicyclomycin/multidrug efflux system; Provisional 98.66
PRK11195393 lysophospholipid transporter LplT; Provisional 98.64
PF05977 524 MFS_3: Transmembrane secretion effector; InterPro: 98.61
TIGR00886366 2A0108 nitrite extrusion protein (nitrite facilita 98.6
PF03209403 PUCC: PUCC protein; InterPro: IPR004896 This prote 98.58
PRK03545390 putative arabinose transporter; Provisional 98.58
PRK11010491 ampG muropeptide transporter; Validated 98.55
PRK14995 495 methyl viologen resistance protein SmvA; Provision 98.53
TIGR00881379 2A0104 phosphoglycerate transporter family protein 98.53
TIGR00895398 2A0115 benzoate transport. 98.52
PRK08633 1146 2-acyl-glycerophospho-ethanolamine acyltransferase 98.52
cd06174352 MFS The Major Facilitator Superfamily (MFS) is a l 98.51
TIGR00879481 SP MFS transporter, sugar porter (SP) family. This 98.48
TIGR00883394 2A0106 metabolite-proton symporter. This model rep 98.47
PRK09874408 drug efflux system protein MdtG; Provisional 98.46
PRK11902402 ampG muropeptide transporter; Reviewed 98.46
PRK10489417 enterobactin exporter EntS; Provisional 98.45
TIGR00711 485 efflux_EmrB drug resistance transporter, EmrB/QacA 98.45
PRK10091382 MFS transport protein AraJ; Provisional 98.44
PRK06814 1140 acylglycerophosphoethanolamine acyltransferase; Pr 98.43
PF11700477 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 98.41
PRK11128382 putative 3-phenylpropionic acid transporter; Provi 98.39
TIGR00898505 2A0119 cation transport protein. 98.38
TIGR00891405 2A0112 putative sialic acid transporter. 98.36
PRK10213394 nepI ribonucleoside transporter; Reviewed 98.32
TIGR00712438 glpT glycerol-3-phosphate transporter. This model 98.26
PRK15011393 sugar efflux transporter B; Provisional 98.23
TIGR00902382 2A0127 phenyl proprionate permease family protein. 98.23
PRK15403413 multidrug efflux system protein MdtM; Provisional 98.23
TIGR00890377 2A0111 Oxalate/Formate Antiporter. 98.23
PRK11646400 multidrug resistance protein MdtH; Provisional 98.21
PRK10077479 xylE D-xylose transporter XylE; Provisional 98.19
PRK10133438 L-fucose transporter; Provisional 98.17
PRK10642490 proline/glycine betaine transporter; Provisional 98.14
PRK15402406 multidrug efflux system translocase MdfA; Provisio 98.13
PRK05122399 major facilitator superfamily transporter; Provisi 98.11
PRK10504471 putative transporter; Provisional 98.11
PRK12307426 putative sialic acid transporter; Provisional 98.1
PRK12382392 putative transporter; Provisional 98.1
COG2814394 AraJ Arabinose efflux permease [Carbohydrate trans 98.09
TIGR01272310 gluP glucose/galactose transporter. Disruption of 98.09
PRK11663434 regulatory protein UhpC; Provisional 98.09
PRK10054395 putative transporter; Provisional 98.07
PRK09952438 shikimate transporter; Provisional 98.03
TIGR00897402 2A0118 polyol permease family. This family of prot 98.02
TIGR01299 742 synapt_SV2 synaptic vesicle protein SV2. This mode 97.99
PRK11273452 glpT sn-glycerol-3-phosphate transporter; Provisio 97.98
TIGR00894465 2A0114euk Na(+)-dependent inorganic phosphate cotr 97.96
TIGR02332412 HpaX 4-hydroxyphenylacetate permease. This protein 97.94
PRK11652394 emrD multidrug resistance protein D; Provisional 97.93
TIGR00903368 2A0129 major facilitator 4 family protein. This fa 97.92
PRK10406432 alpha-ketoglutarate transporter; Provisional 97.91
PRK15075434 citrate-proton symporter; Provisional 97.91
PRK11043401 putative transporter; Provisional 97.9
TIGR00882396 2A0105 oligosaccharide:H+ symporter. 97.89
PRK03699394 putative transporter; Provisional 97.86
PRK09705393 cynX putative cyanate transporter; Provisional 97.8
TIGR00887502 2A0109 phosphate:H+ symporter. This model represen 97.79
TIGR00885410 fucP L-fucose:H+ symporter permease. This family d 97.75
TIGR00896355 CynX cyanate transporter. This family of proteins 97.75
PRK09556467 uhpT sugar phosphate antiporter; Reviewed 97.75
TIGR00805 633 oat sodium-independent organic anion transporter. 97.65
PRK09528420 lacY galactoside permease; Reviewed 97.61
PRK03633381 putative MFS family transporter protein; Provision 97.59
TIGR00788468 fbt folate/biopterin transporter. The only functio 97.57
KOG2615451 consensus Permease of the major facilitator superf 97.57
TIGR02718390 sider_RhtX_FptX siderophore transporter, RhtX/FptX 97.55
PRK03893496 putative sialic acid transporter; Provisional 97.55
PLN00028476 nitrate transmembrane transporter; Provisional 97.51
KOG0569485 consensus Permease of the major facilitator superf 97.47
COG2270438 Permeases of the major facilitator superfamily [Ge 97.42
KOG2532466 consensus Permease of the major facilitator superf 97.31
KOG2816463 consensus Predicted transporter ADD1 (major facili 97.21
PRK10054 395 putative transporter; Provisional 97.19
TIGR00892455 2A0113 monocarboxylate transporter 1. 97.06
TIGR00889418 2A0110 nucleoside transporter. This family of prot 96.97
PRK15034462 nitrate/nitrite transport protein NarU; Provisiona 96.94
KOG0254513 consensus Predicted transporter (major facilitator 96.92
KOG1330493 consensus Sugar transporter/spinster transmembrane 96.9
PF06609 599 TRI12: Fungal trichothecene efflux pump (TRI12); I 96.63
KOG0255521 consensus Synaptic vesicle transporter SVOP and re 96.59
PF03092433 BT1: BT1 family; InterPro: IPR004324 Members of th 96.39
TIGR00880141 2_A_01_02 Multidrug resistance protein. 96.23
COG2223417 NarK Nitrate/nitrite transporter [Inorganic ion tr 96.16
PRK11646 400 multidrug resistance protein MdtH; Provisional 96.14
PF00083451 Sugar_tr: Sugar (and other) transporter; InterPro: 96.01
KOG2325488 consensus Predicted transporter/transmembrane prot 96.01
PRK03633 381 putative MFS family transporter protein; Provision 95.85
PRK10091 382 MFS transport protein AraJ; Provisional 95.52
KOG0637498 consensus Sucrose transporter and related proteins 95.41
TIGR00924475 yjdL_sub1_fam amino acid/peptide transporter (Pept 95.36
TIGR01299742 synapt_SV2 synaptic vesicle protein SV2. This mode 95.32
KOG3626 735 consensus Organic anion transporter [Secondary met 95.28
PRK09584500 tppB putative tripeptide transporter permease; Rev 95.27
PRK10207489 dipeptide/tripeptide permease B; Provisional 94.97
TIGR00924 475 yjdL_sub1_fam amino acid/peptide transporter (Pept 94.86
COG2271448 UhpC Sugar phosphate permease [Carbohydrate transp 94.86
PF03137539 OATP: Organic Anion Transporter Polypeptide (OATP) 94.85
cd06174 352 MFS The Major Facilitator Superfamily (MFS) is a l 94.74
KOG2533495 consensus Permease of the major facilitator superf 94.65
PRK09874 408 drug efflux system protein MdtG; Provisional 94.23
PRK09584 500 tppB putative tripeptide transporter permease; Rev 94.23
PF01306412 LacY_symp: LacY proton/sugar symporter; InterPro: 94.2
TIGR00882 396 2A0105 oligosaccharide:H+ symporter. 94.09
TIGR00900 365 2A0121 H+ Antiporter protein. 94.09
PRK10207 489 dipeptide/tripeptide permease B; Provisional 94.09
PRK10504 471 putative transporter; Provisional 94.04
TIGR00891 405 2A0112 putative sialic acid transporter. 93.99
TIGR00886 366 2A0108 nitrite extrusion protein (nitrite facilita 93.76
PRK11195 393 lysophospholipid transporter LplT; Provisional 93.73
TIGR00897 402 2A0118 polyol permease family. This family of prot 93.59
COG0738422 FucP Fucose permease [Carbohydrate transport and m 93.5
PF07690 352 MFS_1: Major Facilitator Superfamily; InterPro: IP 93.32
PRK15403 413 multidrug efflux system protein MdtM; Provisional 93.14
PRK11663 434 regulatory protein UhpC; Provisional 93.06
TIGR00895 398 2A0115 benzoate transport. 92.91
PRK03893 496 putative sialic acid transporter; Provisional 92.87
PRK10489417 enterobactin exporter EntS; Provisional 92.5
TIGR00889 418 2A0110 nucleoside transporter. This family of prot 92.39
TIGR00769472 AAA ADP/ATP carrier protein family. These proteins 92.24
PRK11043 401 putative transporter; Provisional 91.86
PRK03699 394 putative transporter; Provisional 91.82
KOG2563480 consensus Permease of the major facilitator superf 91.76
TIGR00881 379 2A0104 phosphoglycerate transporter family protein 91.72
PRK15402 406 multidrug efflux system translocase MdfA; Provisio 91.7
PRK11652 394 emrD multidrug resistance protein D; Provisional 91.37
TIGR00710 385 efflux_Bcr_CflA drug resistance transporter, Bcr/C 91.14
TIGR00711 485 efflux_EmrB drug resistance transporter, EmrB/QacA 91.06
PRK11273 452 glpT sn-glycerol-3-phosphate transporter; Provisio 91.0
PLN00028 476 nitrate transmembrane transporter; Provisional 90.98
PRK12307 426 putative sialic acid transporter; Provisional 90.96
PRK09705 393 cynX putative cyanate transporter; Provisional 90.74
TIGR00890 377 2A0111 Oxalate/Formate Antiporter. 90.52
PRK15462 493 dipeptide/tripeptide permease D; Provisional 90.31
PRK05122399 major facilitator superfamily transporter; Provisi 90.18
PF03825400 Nuc_H_symport: Nucleoside H+ symporter 89.75
PRK11551 406 putative 3-hydroxyphenylpropionic transporter MhpT 89.5
TIGR00788468 fbt folate/biopterin transporter. The only functio 89.43
TIGR00880141 2_A_01_02 Multidrug resistance protein. 89.03
TIGR00893399 2A0114 d-galactonate transporter. 88.99
PRK09952 438 shikimate transporter; Provisional 88.76
PF01770412 Folate_carrier: Reduced folate carrier; InterPro: 88.63
PRK03545 390 putative arabinose transporter; Provisional 88.62
PRK09528 420 lacY galactoside permease; Reviewed 88.62
PRK09556 467 uhpT sugar phosphate antiporter; Reviewed 88.09
TIGR00898 505 2A0119 cation transport protein. 87.7
TIGR02332 412 HpaX 4-hydroxyphenylacetate permease. This protein 87.31
PRK12382392 putative transporter; Provisional 86.96
TIGR00892 455 2A0113 monocarboxylate transporter 1. 86.9
KOG3764464 consensus Vesicular amine transporter [Intracellul 86.76
TIGR00806511 rfc RFC reduced folate carrier. Proteins of the RF 86.75
PRK10213 394 nepI ribonucleoside transporter; Reviewed 86.36
TIGR00885 410 fucP L-fucose:H+ symporter permease. This family d 86.35
PRK15075 434 citrate-proton symporter; Provisional 86.27
PF05978156 UNC-93: Ion channel regulatory protein UNC-93; Int 85.53
TIGR00883 394 2A0106 metabolite-proton symporter. This model rep 85.45
PRK10473 392 multidrug efflux system protein MdtL; Provisional 85.43
TIGR00899 375 2A0120 sugar efflux transporter. This family of pr 84.83
PF05977524 MFS_3: Transmembrane secretion effector; InterPro: 84.69
PRK08633 1146 2-acyl-glycerophospho-ethanolamine acyltransferase 84.58
TIGR00879481 SP MFS transporter, sugar porter (SP) family. This 84.41
PRK10642 490 proline/glycine betaine transporter; Provisional 83.92
PRK10133 438 L-fucose transporter; Provisional 83.72
PRK15034 462 nitrate/nitrite transport protein NarU; Provisiona 82.57
PF05631354 DUF791: Protein of unknown function (DUF791); Inte 81.65
PRK14995 495 methyl viologen resistance protein SmvA; Provision 80.8
PRK10077 479 xylE D-xylose transporter XylE; Provisional 80.53
PF03825 400 Nuc_H_symport: Nucleoside H+ symporter 80.35
PRK11102 377 bicyclomycin/multidrug efflux system; Provisional 80.19
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter Back     alignment and domain information 
Probab=100.00  E-value=3.2e-58  Score=469.13  Aligned_cols=309  Identities=43%  Similarity=0.827  Sum_probs=266.7

Q ss_pred             eeehhHhhchHHHhhhccCCcccccccCCCcchhHHHHHHHHHHHhhcccccchhhHHHHhcCCCchhh--hhHHHHHHH
Q 017498            3 SVAVIIIGFSADIGYILGDTKEHCSKFRGTRTRAAFVFVIGFWLLDLANNTVQGPARALLADLSGPDQR--NSANAIFCS   80 (370)
Q Consensus         3 ~isl~ll~~s~~iG~~lgd~s~~~~~~~g~r~~~I~l~v~gv~llD~s~n~~q~P~RAli~D~~p~~qq--~~a~a~~s~   80 (370)
                      ++++++++++++++..++|..+     .+.+.+++++++++++++|++.|++|+|+||+++|++|++||  +.|++|+++
T Consensus        85 ~~~l~ll~~~~~~~~~~~~~~~-----~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~  159 (477)
T TIGR01301        85 AFAVILIGFAADIGHLFGDNLD-----KKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSF  159 (477)
T ss_pred             HHHHHHHHhCchhhhhcccccc-----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHH
Confidence            4578899999999998887544     234678899999999999999999999999999999999876  489999999


Q ss_pred             HHHhhhhhhhhcccccccccccccccchhhhcccchhHHHHHHHHHHHHHHhhheeeEeeccCCCCCCCCCCCCCCCCCC
Q 017498           81 WMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLD  160 (370)
Q Consensus        81 ~~glG~ilGy~~G~i~~~~~~~~~~~~~~~~~~~~q~k~~f~i~ai~l~itv~~T~~~v~E~p~~~~~~~~~~~~~~~l~  160 (370)
                      +.++|+++||++|++++|.+++|+.+++.++.+|.++|.+|+++++++++|+++|++++||+|+.++++.+.+       
T Consensus       160 ~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~-------  232 (477)
T TIGR01301       160 FMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINS-------  232 (477)
T ss_pred             HHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhh-------
Confidence            9999999999999985567788988888899999999999999999999999999999999987443211000       


Q ss_pred             CcchhccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHH
Q 017498          161 DPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMAL  240 (370)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~si~~mP~~~~~lc~vqff  240 (370)
                                                                +.+ +..+.+..+.++++++++++|||+||++|++|||
T Consensus       233 ------------------------------------------~~~-~~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqff  269 (477)
T TIGR01301       233 ------------------------------------------EAA-PPSKHGEEAFFGELFGAFKYLPRPVWILLLVTCL  269 (477)
T ss_pred             ------------------------------------------hcc-cccccchhhhHHHHHHHHHHCCHHHHHHHHHHHH
Confidence                                                      000 0000112356899999999999999999999999


Q ss_pred             HHHHhhhhhhhccccccceeecCCCCCCchhhHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC-chHHHHHHHHH
Q 017498          241 TWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIG-SRLVWAISNFI  319 (370)
Q Consensus       241 sW~g~f~f~~y~T~~vge~vf~gdp~a~s~~~~~Y~~Gvr~Gs~gl~~~siv~~l~s~il~~l~~~ig-~r~v~~~s~~i  319 (370)
                      +|+|||||++|+||||||+||+++|++    .+.|+||||+|+||+++|++++.++|+++|+++|++| +|++|.+||++
T Consensus       270 sW~a~f~~~~y~T~~vg~~v~~~~~~~----~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~  345 (477)
T TIGR01301       270 NWIAWFPFILFDTDWMGREVYGGSVNQ----GAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNII  345 (477)
T ss_pred             HHHHHHHHHHhccHHHHHHHcCCCCcc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence            999999999999999999999998753    3689999999999999999999999999999999998 59999999999


Q ss_pred             HHHHHHHHHHHhhccccc-cCCCcccCCCCchhHHHHHHHHHHHhccccccC
Q 017498          320 VFACMATTAIISVISVRE-YSGGIEHGIGANQAIKVASLVVFTLLGFPLARS  370 (370)
Q Consensus       320 ~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~l~~~~G~~~a~~  370 (370)
                      +++||+++++++.++++. +.++.++.++|+.++|+.++++++++||+||++
T Consensus       346 ~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~  397 (477)
T TIGR01301       346 LAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAIT  397 (477)
T ss_pred             HHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHH
Confidence            999999999998655532 345667788899999999999999999999974

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF13347 MFS_2: MFS/sugar transport protein Back     alignment and domain information
>PRK10429 melibiose:sodium symporter; Provisional Back     alignment and domain information
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter Back     alignment and domain information
>PRK09669 putative symporter YagG; Provisional Back     alignment and domain information
>PRK11462 putative transporter; Provisional Back     alignment and domain information
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00901 2A0125 AmpG-related permease Back     alignment and domain information
>TIGR00900 2A0121 H+ Antiporter protein Back     alignment and domain information
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily Back     alignment and domain information
>PRK09848 glucuronide transporter; Provisional Back     alignment and domain information
>PRK10473 multidrug efflux system protein MdtL; Provisional Back     alignment and domain information
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional Back     alignment and domain information
>TIGR00893 2A0114 d-galactonate transporter Back     alignment and domain information
>TIGR00899 2A0120 sugar efflux transporter Back     alignment and domain information
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms Back     alignment and domain information
>PRK11102 bicyclomycin/multidrug efflux system; Provisional Back     alignment and domain information
>PRK11195 lysophospholipid transporter LplT; Provisional Back     alignment and domain information
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily Back     alignment and domain information
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) Back     alignment and domain information
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon Back     alignment and domain information
>PRK03545 putative arabinose transporter; Provisional Back     alignment and domain information
>PRK11010 ampG muropeptide transporter; Validated Back     alignment and domain information
>PRK14995 methyl viologen resistance protein SmvA; Provisional Back     alignment and domain information
>TIGR00881 2A0104 phosphoglycerate transporter family protein Back     alignment and domain information
>TIGR00895 2A0115 benzoate transport Back     alignment and domain information
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated Back     alignment and domain information
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>TIGR00879 SP MFS transporter, sugar porter (SP) family Back     alignment and domain information
>TIGR00883 2A0106 metabolite-proton symporter Back     alignment and domain information
>PRK09874 drug efflux system protein MdtG; Provisional Back     alignment and domain information
>PRK11902 ampG muropeptide transporter; Reviewed Back     alignment and domain information
>PRK10489 enterobactin exporter EntS; Provisional Back     alignment and domain information
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily Back     alignment and domain information
>PRK10091 MFS transport protein AraJ; Provisional Back     alignment and domain information
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional Back     alignment and domain information
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions Back     alignment and domain information
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional Back     alignment and domain information
>TIGR00898 2A0119 cation transport protein Back     alignment and domain information
>TIGR00891 2A0112 putative sialic acid transporter Back     alignment and domain information
>PRK10213 nepI ribonucleoside transporter; Reviewed Back     alignment and domain information
>TIGR00712 glpT glycerol-3-phosphate transporter Back     alignment and domain information
>PRK15011 sugar efflux transporter B; Provisional Back     alignment and domain information
>TIGR00902 2A0127 phenyl proprionate permease family protein Back     alignment and domain information
>PRK15403 multidrug efflux system protein MdtM; Provisional Back     alignment and domain information
>TIGR00890 2A0111 Oxalate/Formate Antiporter Back     alignment and domain information
>PRK11646 multidrug resistance protein MdtH; Provisional Back     alignment and domain information
>PRK10077 xylE D-xylose transporter XylE; Provisional Back     alignment and domain information
>PRK10133 L-fucose transporter; Provisional Back     alignment and domain information
>PRK10642 proline/glycine betaine transporter; Provisional Back     alignment and domain information
>PRK15402 multidrug efflux system translocase MdfA; Provisional Back     alignment and domain information
>PRK05122 major facilitator superfamily transporter; Provisional Back     alignment and domain information
>PRK10504 putative transporter; Provisional Back     alignment and domain information
>PRK12307 putative sialic acid transporter; Provisional Back     alignment and domain information
>PRK12382 putative transporter; Provisional Back     alignment and domain information
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR01272 gluP glucose/galactose transporter Back     alignment and domain information
>PRK11663 regulatory protein UhpC; Provisional Back     alignment and domain information
>PRK10054 putative transporter; Provisional Back     alignment and domain information
>PRK09952 shikimate transporter; Provisional Back     alignment and domain information
>TIGR00897 2A0118 polyol permease family Back     alignment and domain information
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2 Back     alignment and domain information
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional Back     alignment and domain information
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter Back     alignment and domain information
>TIGR02332 HpaX 4-hydroxyphenylacetate permease Back     alignment and domain information
>PRK11652 emrD multidrug resistance protein D; Provisional Back     alignment and domain information
>TIGR00903 2A0129 major facilitator 4 family protein Back     alignment and domain information
>PRK10406 alpha-ketoglutarate transporter; Provisional Back     alignment and domain information
>PRK15075 citrate-proton symporter; Provisional Back     alignment and domain information
>PRK11043 putative transporter; Provisional Back     alignment and domain information
>TIGR00882 2A0105 oligosaccharide:H+ symporter Back     alignment and domain information
>PRK03699 putative transporter; Provisional Back     alignment and domain information
>PRK09705 cynX putative cyanate transporter; Provisional Back     alignment and domain information
>TIGR00887 2A0109 phosphate:H+ symporter Back     alignment and domain information
>TIGR00885 fucP L-fucose:H+ symporter permease Back     alignment and domain information
>TIGR00896 CynX cyanate transporter Back     alignment and domain information
>PRK09556 uhpT sugar phosphate antiporter; Reviewed Back     alignment and domain information
>TIGR00805 oat sodium-independent organic anion transporter Back     alignment and domain information
>PRK09528 lacY galactoside permease; Reviewed Back     alignment and domain information
>PRK03633 putative MFS family transporter protein; Provisional Back     alignment and domain information
>TIGR00788 fbt folate/biopterin transporter Back     alignment and domain information
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family Back     alignment and domain information
>PRK03893 putative sialic acid transporter; Provisional Back     alignment and domain information
>PLN00028 nitrate transmembrane transporter; Provisional Back     alignment and domain information
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG2270 Permeases of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>PRK10054 putative transporter; Provisional Back     alignment and domain information
>TIGR00892 2A0113 monocarboxylate transporter 1 Back     alignment and domain information
>TIGR00889 2A0110 nucleoside transporter Back     alignment and domain information
>PRK15034 nitrate/nitrite transport protein NarU; Provisional Back     alignment and domain information
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins Back     alignment and domain information
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins Back     alignment and domain information
>TIGR00880 2_A_01_02 Multidrug resistance protein Back     alignment and domain information
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11646 multidrug resistance protein MdtH; Provisional Back     alignment and domain information
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters Back     alignment and domain information
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] Back     alignment and domain information
>PRK03633 putative MFS family transporter protein; Provisional Back     alignment and domain information
>PRK10091 MFS transport protein AraJ; Provisional Back     alignment and domain information
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial Back     alignment and domain information
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2 Back     alignment and domain information
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PRK09584 tppB putative tripeptide transporter permease; Reviewed Back     alignment and domain information
>PRK10207 dipeptide/tripeptide permease B; Provisional Back     alignment and domain information
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial Back     alignment and domain information
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) Back     alignment and domain information
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK09874 drug efflux system protein MdtG; Provisional Back     alignment and domain information
>PRK09584 tppB putative tripeptide transporter permease; Reviewed Back     alignment and domain information
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] Back     alignment and domain information
>TIGR00882 2A0105 oligosaccharide:H+ symporter Back     alignment and domain information
>TIGR00900 2A0121 H+ Antiporter protein Back     alignment and domain information
>PRK10207 dipeptide/tripeptide permease B; Provisional Back     alignment and domain information
>PRK10504 putative transporter; Provisional Back     alignment and domain information
>TIGR00891 2A0112 putative sialic acid transporter Back     alignment and domain information
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) Back     alignment and domain information
>PRK11195 lysophospholipid transporter LplT; Provisional Back     alignment and domain information
>TIGR00897 2A0118 polyol permease family Back     alignment and domain information
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms Back     alignment and domain information
>PRK15403 multidrug efflux system protein MdtM; Provisional Back     alignment and domain information
>PRK11663 regulatory protein UhpC; Provisional Back     alignment and domain information
>TIGR00895 2A0115 benzoate transport Back     alignment and domain information
>PRK03893 putative sialic acid transporter; Provisional Back     alignment and domain information
>PRK10489 enterobactin exporter EntS; Provisional Back     alignment and domain information
>TIGR00889 2A0110 nucleoside transporter Back     alignment and domain information
>TIGR00769 AAA ADP/ATP carrier protein family Back     alignment and domain information
>PRK11043 putative transporter; Provisional Back     alignment and domain information
>PRK03699 putative transporter; Provisional Back     alignment and domain information
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>TIGR00881 2A0104 phosphoglycerate transporter family protein Back     alignment and domain information
>PRK15402 multidrug efflux system translocase MdfA; Provisional Back     alignment and domain information
>PRK11652 emrD multidrug resistance protein D; Provisional Back     alignment and domain information
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily Back     alignment and domain information
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily Back     alignment and domain information
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional Back     alignment and domain information
>PLN00028 nitrate transmembrane transporter; Provisional Back     alignment and domain information
>PRK12307 putative sialic acid transporter; Provisional Back     alignment and domain information
>PRK09705 cynX putative cyanate transporter; Provisional Back     alignment and domain information
>TIGR00890 2A0111 Oxalate/Formate Antiporter Back     alignment and domain information
>PRK15462 dipeptide/tripeptide permease D; Provisional Back     alignment and domain information
>PRK05122 major facilitator superfamily transporter; Provisional Back     alignment and domain information
>PF03825 Nuc_H_symport: Nucleoside H+ symporter Back     alignment and domain information
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional Back     alignment and domain information
>TIGR00788 fbt folate/biopterin transporter Back     alignment and domain information
>TIGR00880 2_A_01_02 Multidrug resistance protein Back     alignment and domain information
>TIGR00893 2A0114 d-galactonate transporter Back     alignment and domain information
>PRK09952 shikimate transporter; Provisional Back     alignment and domain information
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) Back     alignment and domain information
>PRK03545 putative arabinose transporter; Provisional Back     alignment and domain information
>PRK09528 lacY galactoside permease; Reviewed Back     alignment and domain information
>PRK09556 uhpT sugar phosphate antiporter; Reviewed Back     alignment and domain information
>TIGR00898 2A0119 cation transport protein Back     alignment and domain information
>TIGR02332 HpaX 4-hydroxyphenylacetate permease Back     alignment and domain information
>PRK12382 putative transporter; Provisional Back     alignment and domain information
>TIGR00892 2A0113 monocarboxylate transporter 1 Back     alignment and domain information
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR00806 rfc RFC reduced folate carrier Back     alignment and domain information
>PRK10213 nepI ribonucleoside transporter; Reviewed Back     alignment and domain information
>TIGR00885 fucP L-fucose:H+ symporter permease Back     alignment and domain information
>PRK15075 citrate-proton symporter; Provisional Back     alignment and domain information
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans Back     alignment and domain information
>TIGR00883 2A0106 metabolite-proton symporter Back     alignment and domain information
>PRK10473 multidrug efflux system protein MdtL; Provisional Back     alignment and domain information
>TIGR00899 2A0120 sugar efflux transporter Back     alignment and domain information
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily Back     alignment and domain information
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated Back     alignment and domain information
>TIGR00879 SP MFS transporter, sugar porter (SP) family Back     alignment and domain information
>PRK10642 proline/glycine betaine transporter; Provisional Back     alignment and domain information
>PRK10133 L-fucose transporter; Provisional Back     alignment and domain information
>PRK15034 nitrate/nitrite transport protein NarU; Provisional Back     alignment and domain information
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PRK14995 methyl viologen resistance protein SmvA; Provisional Back     alignment and domain information
>PRK10077 xylE D-xylose transporter XylE; Provisional Back     alignment and domain information
>PF03825 Nuc_H_symport: Nucleoside H+ symporter Back     alignment and domain information
>PRK11102 bicyclomycin/multidrug efflux system; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query370
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 98.96
3o7q_A438 L-fucose-proton symporter; transporter, multi-PASS 98.96
2gfp_A375 EMRD, multidrug resistance protein D; membrane pro 98.71
4aps_A491 DI-OR tripeptide H+ symporter; transport protein, 98.15
4gc0_A491 D-xylose-proton symporter; MFS, transport protein; 97.79
2cfq_A417 Lactose permease; transport, transport mechanism, 96.73
4aps_A 491 DI-OR tripeptide H+ symporter; transport protein, 96.01
2xut_A 524 Proton/peptide symporter family protein; transport 95.26
2gfp_A 375 EMRD, multidrug resistance protein D; membrane pro 94.69
1pw4_A 451 Glycerol-3-phosphate transporter; transmembrane, i 93.92
3o7q_A 438 L-fucose-proton symporter; transporter, multi-PASS 92.0
2xut_A524 Proton/peptide symporter family protein; transport 91.9
2cfq_A 417 Lactose permease; transport, transport mechanism, 91.14
4gc0_A491 D-xylose-proton symporter; MFS, transport protein; 81.63
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure
Probab=98.96  E-value=5.2e-09  Score=102.35  Aligned_cols=203  Identities=12%  Similarity=0.133  Sum_probs=126.2

Q ss_pred             cccccchhhHHHHhcCCCchhhhhHHHHHHHHHHhhhhhhhhcccccccccccccccchhhhcccchhHHHHHHHHHHHH
Q 017498           50 ANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLT  129 (370)
Q Consensus        50 s~n~~q~P~RAli~D~~p~~qq~~a~a~~s~~~glG~ilGy~~G~i~~~~~~~~~~~~~~~~~~~~q~k~~f~i~ai~l~  129 (370)
                      +......+..+++.|..|+++|.+++++.+...++|.++|..+++.. . ...+            +.|..|.+.+++.+
T Consensus       132 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l-~-~~~g------------~w~~~f~~~~~~~~  197 (451)
T 1pw4_A          132 FQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG-M-AWFN------------DWHAALYMPAFCAI  197 (451)
T ss_dssp             HHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH-H-HHTC------------CSTTCTHHHHHHHH
T ss_pred             HhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH-H-HHhc------------cHHHHHHHHHHHHH
Confidence            34456678889999999999999999999999999999999888541 1 1111            13455666666666


Q ss_pred             HHhhheeeEeeccCCCCCCCCCCCCCCCCCCCcchhccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCCCC
Q 017498          130 LCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSF  209 (370)
Q Consensus       130 itv~~T~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (370)
                      +..++..+..||.|......+. ++  .. ..         +              +    .        +..+++ ++ 
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~-~~--~~-~~---------~--------------~----~--------~~~~~~-~~-  236 (451)
T 1pw4_A          198 LVALFAFAMMRDTPQSCGLPPI-EE--YK-ND---------Y--------------P----D--------DYNEKA-EQ-  236 (451)
T ss_dssp             HHHHHHHHHCCCSSTTTCCCSC-TT--TC-CC------------------------------------------------
T ss_pred             HHHHHHHhhccCCHhhcCCCCh-hh--hc-cc---------c--------------c----c--------cchhhh-hc-
Confidence            5555566667886543211110 00  00 00         0              0    0        000000 00 


Q ss_pred             CCCchhhHHHH-HHHhccCCHHHHHHHHHHHHHHHHhhhhhhhccccccceeecCCCCCCchhhHhHHhHHHHHHHHHHH
Q 017498          210 NDGPGAVLVNL-LTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLL  288 (370)
Q Consensus       210 ~~~~~~~~~~l-~~si~~mP~~~~~lc~vqffsW~g~f~f~~y~T~~vge~vf~gdp~a~s~~~~~Y~~Gvr~Gs~gl~~  288 (370)
                          ....++. ++.+. -.+.++.+++..++.++++..+..|.+.|+.+ .++.++.             .. .+-+..
T Consensus       237 ----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~-------------~~-~~~~~~  296 (451)
T 1pw4_A          237 ----ELTAKQIFMQYVL-PNKLLWYIAIANVFVYLLRYGILDWSPTYLKE-VKHFALD-------------KS-SWAYFL  296 (451)
T ss_dssp             ------CCTHHHHHHTS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTT-BSCCCHH-------------HH-HHHHHH
T ss_pred             ----ccccccchHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCHH-------------HH-HHHHHH
Confidence                0111222 22222 25788999999999999999999999988876 4443321             11 233556


Q ss_pred             HHHHHHHHHHHHHHHHhhh--CchHHHHHHHHHHH-HHHHHH
Q 017498          289 NSVVLGVSSFLIEPMCRWI--GSRLVWAISNFIVF-ACMATT  327 (370)
Q Consensus       289 ~siv~~l~s~il~~l~~~i--g~r~v~~~s~~i~a-~~~~~~  327 (370)
                      +.+...+.+++..++.+|+  |+|++..++.++.+ ++++..
T Consensus       297 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (451)
T 1pw4_A          297 YEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVY  338 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence            6677777888889999999  99999888877766 555443
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Back     alignment and structure
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Back     alignment and structure
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Back     alignment and structure
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* Back     alignment and structure
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Back     alignment and structure
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Back     alignment and structure
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Back     alignment and structure
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Back     alignment and structure
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Back     alignment and structure
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Back     alignment and structure
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Back     alignment and structure
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query370
d1pw4a_447 Glycerol-3-phosphate transporter {Escherichia coli 98.7
d1pv7a_417 Lactose permease {Escherichia coli [TaxId: 562]} 97.79
d1pv7a_ 417 Lactose permease {Escherichia coli [TaxId: 562]} 95.36
d1pw4a_ 447 Glycerol-3-phosphate transporter {Escherichia coli 88.16
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.70  E-value=1.1e-07  Score=89.76  Aligned_cols=196  Identities=13%  Similarity=0.118  Sum_probs=110.1

Q ss_pred             hcccccchhhHHHHhcCCCchhhhhHHHHHHHHHHhhhhhhhhcccccccccccccccchhhhcccchhHHHHHHHHHHH
Q 017498           49 LANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFL  128 (370)
Q Consensus        49 ~s~n~~q~P~RAli~D~~p~~qq~~a~a~~s~~~glG~ilGy~~G~i~~~~~~~~~~~~~~~~~~~~q~k~~f~i~ai~l  128 (370)
                      ++......+..+++.|..|+++|++++++.+...++|+++|..++... .. .+            ..-+..|.+.+++.
T Consensus       128 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~-~~-~~------------~~w~~~~~~~~~~~  193 (447)
T d1pw4a_         128 WFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG-MA-WF------------NDWHAALYMPAFCA  193 (447)
T ss_dssp             HHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH-HH-HT------------CCSTTCTHHHHHHH
T ss_pred             HhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhH-hh-hh------------hcccccchhhhhhH
Confidence            344456678889999999999999999999999999999998776541 11 00            01233344444444


Q ss_pred             HHHhhheeeEeeccCCCCCCCCCCCCCCCCCCCcchhccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCCC
Q 017498          129 TLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGS  208 (370)
Q Consensus       129 ~itv~~T~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (370)
                      ++..++..+..+|.|-....... ++  ...+.++                                     ..+++.+.
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~-------------------------------------~~~~~~~~  233 (447)
T d1pw4a_         194 ILVALFAFAMMRDTPQSCGLPPI-EE--YKNDYPD-------------------------------------DYNEKAEQ  233 (447)
T ss_dssp             HHHHHHHHHHCCCSSTTTCCCSC-TT--TCCC------------------------------------------------
T ss_pred             HHHHHHHHHhcccchhhcccchh-hh--hhhhccc-------------------------------------chhhcccc
Confidence            44445555566665432211110 00  0000000                                     00000000


Q ss_pred             CCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhhhhccccccceeecCCCCCCchhhHhHHhHHHHHHHHHHH
Q 017498          209 FNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLL  288 (370)
Q Consensus       209 ~~~~~~~~~~~l~~si~~mP~~~~~lc~vqffsW~g~f~f~~y~T~~vge~vf~gdp~a~s~~~~~Y~~Gvr~Gs~gl~~  288 (370)
                           ....++.......-.+.++.++...++.+...+.+..|.+.|+.+ .++.++.              ...+...+
T Consensus       234 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------------~~~~~~~~  293 (447)
T d1pw4a_         234 -----ELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKE-VKHFALD--------------KSSWAYFL  293 (447)
T ss_dssp             -------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTT-BSCCCHH--------------HHHHHHHH
T ss_pred             -----ccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhccc-ccccccc--------------hhhhhhhc
Confidence                 001112222222345788899999999999999999999988876 3332221              11233445


Q ss_pred             HHHHHHHHHHHHHHHHhhhCchHHHHHHHH
Q 017498          289 NSVVLGVSSFLIEPMCRWIGSRLVWAISNF  318 (370)
Q Consensus       289 ~siv~~l~s~il~~l~~~ig~r~v~~~s~~  318 (370)
                      +.+...+..++..++.+|++++.......+
T Consensus       294 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  323 (447)
T d1pw4a_         294 YEYAGIPGTLLCGWMSDKVFRGNRGATGVF  323 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred             chhhhhhhhhhhhhhhhhccccccccccch
Confidence            556666677777788888776554433333
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Back     information, alignment and structure