Citrus Sinensis ID: 017500

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370
MDISDASRTTTQTVTDYDRAKEVQAFDDTKAGVKGLVDAGIVNIPRIFIRPPEELVEELTSHQTNFQVPVIDLDGVRGNNLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGISKFNELDVELKKEFYTRDQTRNVRFNSNFDLHYSRTANWRDTLTISTLASTNLDPNEYPEVCRDAAREYIKNVTKLAETLFELLSLALGLKAEHLLEIGCPKEYILLCQYYPPCPQPDLTLGATGHSDPSFLTILLQDQIGGLQVFHDNQWVGVQPIVGGLVVNIGDFLQIISNDKFKSVKHRVVASQVGPRVSVPCFFMGHNAEIPKSYGPIKELTSAENPPIYRDFLASEYFSKRFSTVLDDNSPLHQLKL
ccccccccccccccccccHHHHHHHccccccHHHHHHHcccccccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHccccccccEEEEccccccccccccccEEEEcEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcccccEEEEEccccccccccccccccccccccccEEEEccccccEEEEEccEEEEcccccccEEEEEccHHHHHHcccccccccEEEccccccEEEEEEEccccccccccEEEccccccccccccccccccHHHHHHHHHHcccccccccccccc
cccHHHHHcccccccccccHHHHHHcccccHHHHHHHHccccccccHcEccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHccccccEEEEEccEcEcccccccHHHHEEEEccccccccHcHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccccEEEEEEEcccccccccccEEEEcccccEEEEEEcccccEEEEEccEEEEcccccccEEEEEcHHHHHHcccccccccEEEcccccccEEEEEEEEcccccccccccccHHHHcccccccccccccHHHHHHHHHHccccccccccHccc
mdisdasrtttqtvtdydrakevqafddtkagVKGLVDagivniprifirppeELVEELTShqtnfqvpvidldgvrgnnLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGISKFNELDVELKKEfytrdqtrnvrfnsnfdlhysrtanwrdtLTISTLastnldpneypeVCRDAAREYIKNVTKLAETLFELLSLALGLKAehlleigcpkeYILLcqyyppcpqpdltlgatghsdpSFLTILLQDQigglqvfhdnqwvgvqpivggLVVNIGDFLQIISNDKFKSVKHRVVAsqvgprvsvpcffmghnaeipksygpikeltsaenppiyrDFLASEYFSKRFstvlddnsplhqlkl
mdisdasrtttqtvtdydrakevqafddtkagvkglvdagivnipRIFIRPPEELVEELTSHQTNFQVPVIDLDGVRGNNLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGISKFNELDVELKKEfytrdqtrnvrfnsnfdlhysrtanwrdtLTISTlastnldpneyPEVCRDAAREYIKNVTKLAETLFELLSLALGLKAEHLLEIGCPKEYILLCQYYPPCPQPDLTLGATGHSDPSFLTILLQDQIGGLQVFHDNQWVGVQPIVGGLVVNIGDFLQIISNDKFKSVKHRVVASQVGPRVSVPCFFMGHNAEIPKSYGPIKELTSAENPPIYRDFLASEYFSKRFstvlddnsplhqlkl
MDISDASRTTTQTVTDYDRAKEVQAFDDTKAGVKGLVDAGIVNIPRIFIRPPEELVEELTSHQTNFQVPVIDLDGVRGNNLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGISKFNELDVELKKEFYTRDQTRNVRFNSNFDLHYSRTANWRDTLTISTLASTNLDPNEYPEVCRDAAREYIKNVTKLAETLFELLSLALGLKAEHLLEIGCPKEYILLCQYYPPCPQPDLTLGATGHSDPSFLTILLQDQIGGLQVFHDNQWVGVQPIVGGLVVNIGDFLQIISNDKFKSVKHRVVASQVGPRVSVPCFFMGHNAEIPKSYGPIKELTSAENPPIYRDFLASEYFSKRFSTVLDDNSPLHQLKL
**********************VQAFDDTKAGVKGLVDAGIVNIPRIFIRPPEELVEELTSHQTNFQVPVIDLDGVRGNNLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGISKFNELDVELKKEFYTRDQTRNVRFNSNFDLHYSRTANWRDTLTISTLASTNLDPNEYPEVCRDAAREYIKNVTKLAETLFELLSLALGLKAEHLLEIGCPKEYILLCQYYPPCPQPDLTLGATGHSDPSFLTILLQDQIGGLQVFHDNQWVGVQPIVGGLVVNIGDFLQIISNDKFKSVKHRVVASQVGPRVSVPCFFMGHNAEIPKSYGPIKELTSAENPPIYRDFLASEYFSKRFSTV************
***********************QAFDDTKAGVKGLVDAGIVNIPRIFIRPP*************FQVPVIDLDGVRGNNLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGISKFNELDVELKK**********VRFNSNFDLHYSRTANWRDTLTISTLASTNLDPNEYPEVCRDAAREYIKNVTKLAETLFELLSLALGLKAEHLLEIGCPKEYILLCQYYPPCPQPDLTLGATGHSDPSFLTILLQDQIGGLQVFHDNQWVGVQPIVGGLVVNIGDFLQIISNDKFKSVKHRVVASQVGPRVSVPCFFMGHNAEIPKSYGPIKELTSAENPPIYRDFLASEYFSKRFSTVLDDNSPLHQLKL
*************VTDYDRAKEVQAFDDTKAGVKGLVDAGIVNIPRIFIRPPEELVEELTSHQTNFQVPVIDLDGVRGNNLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGISKFNELDVELKKEFYTRDQTRNVRFNSNFDLHYSRTANWRDTLTISTLASTNLDPNEYPEVCRDAAREYIKNVTKLAETLFELLSLALGLKAEHLLEIGCPKEYILLCQYYPPCPQPDLTLGATGHSDPSFLTILLQDQIGGLQVFHDNQWVGVQPIVGGLVVNIGDFLQIISNDKFKSVKHRVVASQVGPRVSVPCFFMGHNAEIPKSYGPIKELTSAENPPIYRDFLASEYFSKRFSTVLDDNSPLHQLKL
*****************DRAKEVQAFDDTKAGVKGLVDAGIVNIPRIFIRPPEEL*******QTNFQVPVIDLDGVRGNNLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGISKFNELDVELKKEFYTRDQTRNVRFNSNFDLHYSRTANWRDTLTISTLASTNLDPNEYPEVCRDAAREYIKNVTKLAETLFELLSLALGLKAEHLLEIGCPKEYILLCQYYPPCPQPDLTLGATGHSDPSFLTILLQDQIGGLQVFHDNQWVGVQPIVGGLVVNIGDFLQIISNDKFKSVKHRVVASQVGPRVSVPCFFMGHNAEIPKSYGPIKELTSAENPPIYRDFLASEYFSKRFSTVLDDNSPLH****
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MDISDASRTTTQTVTDYDRAKEVQAFDDTKAGVKGLVDAGIVNIPRIFIRPPEELVEELTSHQTNFQVPVIDLDGVRGNNLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGISKFNELDVELKKEFYTRDQTRNVRFNSNFDLHYSRTANWRDTLTISTLASTNLDPNEYPEVCRDAAREYIKNVTKLAETLFELLSLALGLKAEHLLEIGCPKEYILLCQYYPPCPQPDLTLGATGHSDPSFLTILLQDQIGGLQVFHDNQWVGVQPIVGGLVVNIGDFLQIISNDKFKSVKHRVVASQVGPRVSVPCFFMGHNAEIPKSYGPIKELTSAENPPIYRDFLASEYFSKRFSTVLDDNSPLHQLKL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query370 2.2.26 [Sep-21-2011]
Q84MB3365 1-aminocyclopropane-1-car yes no 0.962 0.975 0.529 1e-103
Q9LTH7366 1-aminocyclopropane-1-car no no 0.970 0.980 0.504 1e-97
Q9LTH8364 1-aminocyclopropane-1-car no no 0.954 0.969 0.511 1e-96
O04847401 Deacetoxyvindoline 4-hydr N/A no 0.964 0.890 0.478 2e-96
P93824360 1-aminocyclopropane-1-car no no 0.954 0.980 0.497 2e-94
Q43383398 1-aminocyclopropane-1-car no no 0.948 0.881 0.495 3e-94
Q9LSW7365 1-aminocyclopropane-1-car no no 0.972 0.986 0.475 3e-94
Q9M2C4370 1-aminocyclopropane-1-car no no 0.956 0.956 0.486 2e-91
Q8H1S4369 1-aminocyclopropane-1-car no no 0.937 0.940 0.474 5e-91
Q9LSW6362 1-aminocyclopropane-1-car no no 0.956 0.977 0.464 1e-88
>sp|Q84MB3|ACCH1_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1 Back     alignment and function desciption
 Score =  375 bits (962), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 190/359 (52%), Positives = 236/359 (65%), Gaps = 3/359 (0%)

Query: 14  VTDYDRAKEVQAFDDTKAGVKGLVDAGIVNIPRIFIRPPEELVEELTSHQTNFQVPVIDL 73
           V   DR+  ++AFD+TK GVKGL+DAGI  IP IF  PP  L        ++F +P IDL
Sbjct: 8   VAALDRSTLLKAFDETKTGVKGLIDAGITEIPSIFRAPPATLTSPKPPSSSDFSIPTIDL 67

Query: 74  DGVRGNNL--EEIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGISKFNELDVELKKEF 131
            G   +++    +V+++  AAE WGFFQV+NHGIP++VLE+MI+GI +F+E D E+KK F
Sbjct: 68  KGGGTDSITRRSLVEKIGDAAEKWGFFQVINHGIPMDVLEKMIDGIREFHEQDTEVKKGF 127

Query: 132 YTRDQTRNVRFNSNFDLHYSRTANWRDTLTISTLASTNLDPNEYPEVCRDAAREYIKNVT 191
           Y+RD    + ++SNFDL  S  ANWRDTL   T A     P + P  C +   EY K V 
Sbjct: 128 YSRDPASKMVYSSNFDLFSSPAANWRDTLGCYT-APDPPRPEDLPATCGEMMIEYSKEVM 186

Query: 192 KLAETLFELLSLALGLKAEHLLEIGCPKEYILLCQYYPPCPQPDLTLGATGHSDPSFLTI 251
           KL + LFELLS ALGL   HL ++ C    +LL  YYPPCPQPDLTLG T HSD SFLTI
Sbjct: 187 KLGKLLFELLSEALGLNTNHLKDMDCTNSLLLLGHYYPPCPQPDLTLGLTKHSDNSFLTI 246

Query: 252 LLQDQIGGLQVFHDNQWVGVQPIVGGLVVNIGDFLQIISNDKFKSVKHRVVASQVGPRVS 311
           LLQD IGGLQV HD  WV V P+ G LVVN+GD LQ+I+NDKF SV+HRV+A+  GPR+S
Sbjct: 247 LLQDHIGGLQVLHDQYWVDVPPVPGALVVNVGDLLQLITNDKFISVEHRVLANVAGPRIS 306

Query: 312 VPCFFMGHNAEIPKSYGPIKELTSAENPPIYRDFLASEYFSKRFSTVLDDNSPLHQLKL 370
           V CFF  +    P+ YGPIKE+ S ENPP YRD   +EY     S   D  S L  LK+
Sbjct: 307 VACFFSSYLMANPRVYGPIKEILSEENPPNYRDTTITEYAKFYRSKGFDGTSGLLYLKI 365

Arabidopsis thaliana (taxid: 3702)
>sp|Q9LTH7|ACH12_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 12 OS=Arabidopsis thaliana GN=At5g59540 PE=2 SV=1 Back     alignment and function description
>sp|Q9LTH8|ACH11_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 11 OS=Arabidopsis thaliana GN=At5g59530 PE=2 SV=1 Back     alignment and function description
>sp|O04847|DV4H_CATRO Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2 Back     alignment and function description
>sp|P93824|ACCH6_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 6 OS=Arabidopsis thaliana GN=At1g04350 PE=2 SV=1 Back     alignment and function description
>sp|Q43383|ACCH5_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 5 OS=Arabidopsis thaliana GN=2A6 PE=2 SV=2 Back     alignment and function description
>sp|Q9LSW7|ACCH9_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 9 OS=Arabidopsis thaliana GN=At5g43440 PE=2 SV=1 Back     alignment and function description
>sp|Q9M2C4|ACCH8_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 8 OS=Arabidopsis thaliana GN=At3g61400 PE=2 SV=1 Back     alignment and function description
>sp|Q8H1S4|ACCH3_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 3 OS=Arabidopsis thaliana GN=At1g06650 PE=2 SV=1 Back     alignment and function description
>sp|Q9LSW6|ACH10_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 10 OS=Arabidopsis thaliana GN=At5g43450 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query370
147820925368 hypothetical protein VITISV_026363 [Viti 0.954 0.959 0.543 1e-108
225433023363 PREDICTED: 1-aminocyclopropane-1-carboxy 0.964 0.983 0.543 1e-108
225437842409 PREDICTED: 1-aminocyclopropane-1-carboxy 0.954 0.863 0.540 1e-108
297744121368 unnamed protein product [Vitis vinifera] 0.954 0.959 0.540 1e-107
359477716 673 PREDICTED: 1-aminocyclopropane-1-carboxy 0.945 0.520 0.533 1e-105
356559859374 PREDICTED: LOW QUALITY PROTEIN: 1-aminoc 0.994 0.983 0.516 1e-105
224111006379 predicted protein [Populus trichocarpa] 0.959 0.936 0.540 1e-105
359477771 680 PREDICTED: 1-aminocyclopropane-1-carboxy 0.824 0.448 0.610 1e-105
118489003370 unknown [Populus trichocarpa x Populus d 0.972 0.972 0.532 1e-104
356559863369 PREDICTED: 1-aminocyclopropane-1-carboxy 0.981 0.983 0.521 1e-104
>gi|147820925|emb|CAN65048.1| hypothetical protein VITISV_026363 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/355 (54%), Positives = 244/355 (68%), Gaps = 2/355 (0%)

Query: 17  YDRAKEVQAFDDTKAGVKGLVDAGIVNIPRIFIRPPEELVEELT-SHQTNFQVPVIDLDG 75
           ++RA EV+ FD+TKAGVKGLVD+G+  IPR FI PPE L   L+ +  T+FQVPVID  G
Sbjct: 15  FNRAIEVKKFDETKAGVKGLVDSGVEKIPRFFIHPPENLQRSLSETGGTSFQVPVIDFRG 74

Query: 76  VRGNNLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGISKFNELDVELKKEFYTRD 135
           +      EIV  +R A+ETWGFFQ+VNHGIP+ ++EE++EG+ +F+E   E+K E+Y+RD
Sbjct: 75  LDMGQRAEIVRAIRKASETWGFFQMVNHGIPITIIEEVLEGVRRFHEQPQEMKMEWYSRD 134

Query: 136 QTRNVRFNSNFDLHYSRTANWRDTLTISTLASTNLDPNEYPEVCRDAAREYIKNVTKLAE 195
             + V++  N DLH S  ANWRD+++        LDP   P VCR     YIK + +L E
Sbjct: 135 SKQPVKYYCNGDLHVSNAANWRDSISCE-FPDGTLDPEALPRVCRKEITAYIKCMAELKE 193

Query: 196 TLFELLSLALGLKAEHLLEIGCPKEYILLCQYYPPCPQPDLTLGATGHSDPSFLTILLQD 255
            + ELLS ALGL ++HL ++GC +   L+C YYP CPQPDLTLGAT HSDP F+TILLQD
Sbjct: 194 MVGELLSEALGLSSDHLKQMGCTETQTLVCHYYPGCPQPDLTLGATKHSDPCFITILLQD 253

Query: 256 QIGGLQVFHDNQWVGVQPIVGGLVVNIGDFLQIISNDKFKSVKHRVVASQVGPRVSVPCF 315
            IGGLQV H NQWV V P+ G LV N+GDF+Q+I+NDKFKSV+HRV+A QVGPR+S  CF
Sbjct: 254 NIGGLQVLHQNQWVDVPPVHGALVANLGDFMQLITNDKFKSVEHRVLARQVGPRISAACF 313

Query: 316 FMGHNAEIPKSYGPIKELTSAENPPIYRDFLASEYFSKRFSTVLDDNSPLHQLKL 370
           F        K YGPIKE  S  NPPIYR+   +EY +   S  LD  S L   KL
Sbjct: 314 FYPSTINTYKPYGPIKEFLSDNNPPIYRETHVNEYLAYYRSKGLDGTSALPHFKL 368

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225433023|ref|XP_002284638.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225437842|ref|XP_002263628.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297744121|emb|CBI37091.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359477716|ref|XP_003632012.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 3 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356559859|ref|XP_003548214.1| PREDICTED: LOW QUALITY PROTEIN: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Glycine max] Back     alignment and taxonomy information
>gi|224111006|ref|XP_002315713.1| predicted protein [Populus trichocarpa] gi|222864753|gb|EEF01884.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359477771|ref|XP_003632020.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|118489003|gb|ABK96309.1| unknown [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|356559863|ref|XP_003548216.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query370
TAIR|locus:2009130365 AT1G06620 [Arabidopsis thalian 0.962 0.975 0.529 8.7e-95
TAIR|locus:2148303366 AT5G59540 [Arabidopsis thalian 0.970 0.980 0.504 1.2e-90
TAIR|locus:2148403364 AT5G59530 [Arabidopsis thalian 0.954 0.969 0.511 1.9e-90
TAIR|locus:2018349360 AT1G04350 [Arabidopsis thalian 0.954 0.980 0.497 4.1e-88
TAIR|locus:2020798398 2A6 [Arabidopsis thaliana (tax 0.948 0.881 0.495 1.8e-87
TAIR|locus:2176456365 AT5G43440 [Arabidopsis thalian 0.967 0.980 0.478 1.8e-87
TAIR|locus:2052781358 AT2G30830 [Arabidopsis thalian 0.948 0.980 0.495 3.7e-87
TAIR|locus:2098876370 AT3G61400 [Arabidopsis thalian 0.967 0.967 0.485 2.4e-85
TAIR|locus:2052796362 AT2G30840 [Arabidopsis thalian 0.951 0.972 0.491 3.8e-85
TAIR|locus:2009175369 AT1G06650 [Arabidopsis thalian 0.945 0.948 0.475 4.4e-84
TAIR|locus:2009130 AT1G06620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 943 (337.0 bits), Expect = 8.7e-95, P = 8.7e-95
 Identities = 190/359 (52%), Positives = 236/359 (65%)

Query:    14 VTDYDRAKEVQAFDDTKAGVKGLVDAGIVNIPRIFIRPPEELVEELTSHQTNFQVPVIDL 73
             V   DR+  ++AFD+TK GVKGL+DAGI  IP IF  PP  L        ++F +P IDL
Sbjct:     8 VAALDRSTLLKAFDETKTGVKGLIDAGITEIPSIFRAPPATLTSPKPPSSSDFSIPTIDL 67

Query:    74 DGVRGNNL--EEIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGISKFNELDVELKKEF 131
              G   +++    +V+++  AAE WGFFQV+NHGIP++VLE+MI+GI +F+E D E+KK F
Sbjct:    68 KGGGTDSITRRSLVEKIGDAAEKWGFFQVINHGIPMDVLEKMIDGIREFHEQDTEVKKGF 127

Query:   132 YTRDQTRNVRFNSNFDLHYSRTANWRDTLTISTLASTNLDPNEYPEVCRDAAREYIKNVT 191
             Y+RD    + ++SNFDL  S  ANWRDTL   T A     P + P  C +   EY K V 
Sbjct:   128 YSRDPASKMVYSSNFDLFSSPAANWRDTLGCYT-APDPPRPEDLPATCGEMMIEYSKEVM 186

Query:   192 KLAETLFELLSLALGLKAEHLLEIGCPKEYILLCQYYPPCPQPDLTLGATGHSDPSFLTI 251
             KL + LFELLS ALGL   HL ++ C    +LL  YYPPCPQPDLTLG T HSD SFLTI
Sbjct:   187 KLGKLLFELLSEALGLNTNHLKDMDCTNSLLLLGHYYPPCPQPDLTLGLTKHSDNSFLTI 246

Query:   252 LLQDQIGGLQVFHDNQWVGVQPIVGGLVVNIGDFLQIISNDKFKSVKHRVVASQVGPRVS 311
             LLQD IGGLQV HD  WV V P+ G LVVN+GD LQ+I+NDKF SV+HRV+A+  GPR+S
Sbjct:   247 LLQDHIGGLQVLHDQYWVDVPPVPGALVVNVGDLLQLITNDKFISVEHRVLANVAGPRIS 306

Query:   312 VPCFFMGHNAEIPKSYGPIKELTSAENPPIYRDFLASEYFSKRFSTVLDDNSPLHQLKL 370
             V CFF  +    P+ YGPIKE+ S ENPP YRD   +EY     S   D  S L  LK+
Sbjct:   307 VACFFSSYLMANPRVYGPIKEILSEENPPNYRDTTITEYAKFYRSKGFDGTSGLLYLKI 365
GO:0005737 "cytoplasm" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009414 "response to water deprivation" evidence=RCA
GO:0009611 "response to wounding" evidence=RCA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA
GO:0042538 "hyperosmotic salinity response" evidence=RCA
TAIR|locus:2148303 AT5G59540 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148403 AT5G59530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018349 AT1G04350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020798 2A6 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2176456 AT5G43440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2052781 AT2G30830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2098876 AT3G61400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2052796 AT2G30840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009175 AT1G06650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q84MB3ACCH1_ARATHNo assigned EC number0.52920.96210.9753yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.110.921
4th Layer1.14.11.9LOW CONFIDENCE prediction!
3rd Layer1.14.11.13LOW CONFIDENCE prediction!
4th Layer1.14.11.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00020210001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (375 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query370
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 4e-74
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 9e-71
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 2e-69
PLN02947374 PLN02947, PLN02947, oxidoreductase 1e-67
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 6e-64
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 9e-61
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 3e-58
PLN02704335 PLN02704, PLN02704, flavonol synthase 3e-58
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 7e-55
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 8e-54
PLN02216357 PLN02216, PLN02216, protein SRG1 6e-50
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 5e-46
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 9e-44
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 5e-43
PLN02904357 PLN02904, PLN02904, oxidoreductase 8e-41
PLN02997325 PLN02997, PLN02997, flavonol synthase 1e-40
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 2e-39
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 5e-38
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 2e-33
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 4e-33
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 9e-33
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 2e-32
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 2e-29
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 7e-25
PLN02485329 PLN02485, PLN02485, oxidoreductase 3e-20
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 3e-20
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 2e-17
PLN03176120 PLN03176, PLN03176, flavanone-3-hydroxylase; Provi 1e-06
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information 
 Score =  233 bits (595), Expect = 4e-74
 Identities = 118/325 (36%), Positives = 177/325 (54%), Gaps = 18/325 (5%)

Query: 43  NIPRIFIRPPEELVEELTSHQTNFQVPVIDLDGVRGNNLEEIVDQVRAAAETWGFFQVVN 102
            +P  ++RP  E    L+   T   VPVIDL      +  ++V Q+  A   +GFFQV+N
Sbjct: 14  TLPESYVRPESER-PRLSEVSTCENVPVIDLGS---PDRAQVVQQIGDACRRYGFFQVIN 69

Query: 103 HGIPLNVLEEMIEGISKFNELDVELKKEFYTRDQTRNVRFNSNFDLHYSRTANWRDTLTI 162
           HG+   ++E+M+    +F  L VE K + Y+ D T+ +R +++F++   +  NWRD L  
Sbjct: 70  HGVSAELVEKMLAVAHEFFRLPVEEKMKLYSDDPTKTMRLSTSFNVRKEKVHNWRDYLR- 128

Query: 163 STLASTNLD------PNEYPEVCRDAAREYIKNVTKLAETLFELLSLALGLKAEHLLEIG 216
             L    LD      P+  P   ++    Y + V +L   L E +S +LGL+ +++  + 
Sbjct: 129 --LHCYPLDKYVPEWPSNPPSF-KEIVSTYCREVRELGFRLQEAISESLGLEKDYIKNVL 185

Query: 217 CPKEYILLCQYYPPCPQPDLTLGATGHSDPSFLTILLQDQ-IGGLQVFHDNQWVGVQPIV 275
             +   +   YYPPCP+P+LT G   H+DP+ LTILLQDQ + GLQV  D +WV V P  
Sbjct: 186 GEQGQHMAVNYYPPCPEPELTYGLPAHTDPNALTILLQDQQVAGLQVLKDGKWVAVNPHP 245

Query: 276 GGLVVNIGDFLQIISNDKFKSVKHRVVASQVGPRVSVPCFFMGHNAEIPKSYGPIKELTS 335
           G  V+NIGD LQ +SN ++KSV HR V +    R+SV  F    +  +     P K+LT 
Sbjct: 246 GAFVINIGDQLQALSNGRYKSVWHRAVVNTDKERMSVASFLCPCDDAV---ISPAKKLTD 302

Query: 336 AENPPIYRDFLASEYFSKRFSTVLD 360
                +YRDF  +EY+ K +S  LD
Sbjct: 303 DGTAAVYRDFTYAEYYKKFWSRNLD 327

Length = 337
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178720 PLN03176, PLN03176, flavanone-3-hydroxylase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 370
PLN02947374 oxidoreductase 100.0
PLN02216357 protein SRG1 100.0
PLN02904357 oxidoreductase 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN02704335 flavonol synthase 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02997325 flavonol synthase 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02485329 oxidoreductase 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.92
PLN03176120 flavanone-3-hydroxylase; Provisional 99.88
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.86
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.36
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 94.9
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 93.41
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 91.76
TIGR02466201 conserved hypothetical protein. This family consis 82.34
PF13759101 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB 80.88
>PLN02947 oxidoreductase Back     alignment and domain information 
Probab=100.00  E-value=1.8e-85  Score=638.64  Aligned_cols=335  Identities=36%  Similarity=0.593  Sum_probs=295.7

Q ss_pred             cchHHHHhCCCCCCCccccCCCCCcchhhcc----CCCCCCcceeeCCCCCCCChHHHHHHHHHHHHHcceEEEecCCCC
Q 017500           31 AGVKGLVDAGIVNIPRIFIRPPEELVEELTS----HQTNFQVPVIDLDGVRGNNLEEIVDQVRAAAETWGFFQVVNHGIP  106 (370)
Q Consensus        31 ~~v~~l~~~g~~~vP~~~~~~~~~~~~~~~~----~~~~~~iPvIDls~l~~~~~~~~~~~l~~A~~~~GFF~v~nHGi~  106 (370)
                      .+||.|+++|+++||++|++|+++++.....    +....+||||||+.+.++.+..++++|.+||++||||||+||||+
T Consensus        26 ~~v~~l~~~~~~~vp~~yv~p~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~l~~Ac~~~GFF~v~nHGIp  105 (374)
T PLN02947         26 KGVKHLCDSGITKVPAKYILPASDRPGLTRDEAIAASGNLKLPVIDLAELRGSNRPHVLATLAAACREYGFFQVVNHGVP  105 (374)
T ss_pred             cCHHHHHhcCCCcCCHHhcCCchhccccccccccccCCCCCCCeEECcccCCccHHHHHHHHHHHHHHCcEEEEEcCCCC
Confidence            5899999999999999999999988742110    024457999999988643577899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHhhcccCCCCCcccccCCCCcccCCCCccccccccccCCC----CCCCCCCchhhHHH
Q 017500          107 LNVLEEMIEGISKFNELDVELKKEFYTRDQTRNVRFNSNFDLHYSRTANWRDTLTISTLAST----NLDPNEYPEVCRDA  182 (370)
Q Consensus       107 ~~l~~~~~~~~~~fF~lP~eeK~~~~~~~~~~~~gY~~~~~~~~~~~~d~~e~~~~~~~~p~----~~~p~~~P~~fr~~  182 (370)
                      .++++++++.+++||+||.|+|+++...+.....||+..+....+...+|+|.+.+ ...|.    ..||+. |+.||++
T Consensus       106 ~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~gyg~~~~~~~~~~~~~~e~~~~-~~~p~~~~~~~WP~~-~~~fr~~  183 (374)
T PLN02947        106 SEVIGGMIDVARRFFELPLEERAKYMSADMRAPVRYGTSFNQNKDAVFCWRDFLKL-VCHPLSDVLPHWPSS-PADLRKV  183 (374)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHhhhhcccCCCCeeeccccccccccccCceeceee-ecCCcccccccCccc-hHHHHHH
Confidence            99999999999999999999999986544334567876544344556799999886 44442    269975 6789999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCC---hhhhhhhcCCcceeeccccCCCCCCCCCCCCCCCcccCCceEEEecCCCCC
Q 017500          183 AREYIKNVTKLAETLFELLSLALGLK---AEHLLEIGCPKEYILLCQYYPPCPQPDLTLGATGHSDPSFLTILLQDQIGG  259 (370)
Q Consensus       183 ~~~y~~~~~~la~~ll~~la~~Lgl~---~~~~~~~~~~~~~~l~~~yYP~~~~~~~~~g~~~HtD~~~lTlL~qd~~~G  259 (370)
                      +++|+++|.+|+.+||++||++|||+   .++|.+........+|+||||+||+++.++|+++|||+|+||||+||+++|
T Consensus       184 ~~~Y~~~~~~L~~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrln~YPp~p~~~~~~G~~~HTD~g~lTlL~Qd~v~G  263 (374)
T PLN02947        184 AATYAKATKRLFLELMEAILESLGIVKRGSDELLEEFEAGSQMMVVNCYPACPEPELTLGMPPHSDYGFLTLLLQDEVEG  263 (374)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCccchHHHHHHhcCcceeeeeecCCCCCCcccccCCCCccCCCceEEEEecCCCC
Confidence            99999999999999999999999996   456666544556789999999999999999999999999999999999999


Q ss_pred             eEEEeCCeEEEecCCCCeEEEEeccchhhhcCCeeccccceeccCCCCCeeeEEEeecCCCCCCCceeecCccccCCCCC
Q 017500          260 LQVFHDNQWVGVQPIVGGLVVNIGDFLQIISNDKFKSVKHRVVASQVGPRVSVPCFFMGHNAEIPKSYGPIKELTSAENP  339 (370)
Q Consensus       260 LqV~~~g~W~~V~p~pg~lvVnvGD~Le~~SnG~~kS~~HRV~~~~~~~R~Si~~F~~P~~d~~d~~i~Pl~~~v~~~~p  339 (370)
                      |||+++|+|++|+|+||++||||||+||+||||+|||++|||++++.++||||+||++|+.   |++|+|+++|+++++|
T Consensus       264 LQV~~~g~Wi~V~p~pga~VVNvGD~Lq~~SNG~~kS~~HRVv~~~~~~R~Sia~F~~P~~---d~~i~Pl~~lv~~~~p  340 (374)
T PLN02947        264 LQIMHAGRWVTVEPIPGSFVVNVGDHLEIFSNGRYKSVLHRVRVNSTKPRISVASLHSLPF---ERVVGPAPELVDEQNP  340 (374)
T ss_pred             eeEeECCEEEeCCCCCCeEEEEeCceeeeeeCCEEeccccccccCCCCCEEEEEEEecCCC---CCEEeCChHhcCCCCC
Confidence            9999999999999999999999999999999999999999999998889999999999998   8999999999999999


Q ss_pred             CCCCCccHHHHHHHHHhcCCCCCCccccCCC
Q 017500          340 PIYRDFLASEYFSKRFSTVLDDNSPLHQLKL  370 (370)
Q Consensus       340 ~~y~~~~~~ey~~~~~~~~~~~~~~l~~~~~  370 (370)
                      ++|++++|+||++.++++..++++.|+.+||
T Consensus       341 ~~Y~~~~~~ey~~~~~~~~~~~~~~l~~~~~  371 (374)
T PLN02947        341 RRYMDTDFATFLAYLASAEGKHKNFLESRKL  371 (374)
T ss_pred             CcCCCCCHHHHHHHHHHhccCchhhhhhhhc
Confidence            9999999999999999999999999998875

>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query370
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 8e-42
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 8e-42
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 3e-40
1w9y_A319 The Structure Of Acc Oxidase Length = 319 2e-35
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 4e-14
2bjs_A325 Isopenicillin N Synthase C-Terminal Truncation Muta 6e-10
1ips_A331 Isopenicillin N Synthase From Aspergillus Nidulans 6e-10
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 1e-08
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure 
Iteration: 1

 Score =  167 bits (424), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 106/327 (32%), Positives = 176/327 (53%), Gaps = 27/327 (8%)
Query: 33  VKGLVDAGIVNIPRIFIRPPEEL-------VEELTSHQTNFQVPVIDLDGVRGNN---LE 82
           V+ L  +GI++IP+ +IRP EEL       +EE    +   QVP IDL  +  ++    E
Sbjct: 7   VESLAKSGIISIPKEYIRPKEELESINDVFLEE--KKEDGPQVPTIDLKNIESDDEKIRE 64
Query: 83  EIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGISKFNELDVELKKEFYTRDQTRNVR- 141
             +++++ A+  WG   ++NHGIP +++E + +   +F  L VE K+++     T  ++ 
Sbjct: 65  NCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQG 124
Query: 142 FNSNFDLHYSRTANWRDTLTISTLASTNLDPNEYPEVCRD---AAREYIKNVTKLAETLF 198
           + S    + S    W D            D + +P+   D   A  EY K +  LA  +F
Sbjct: 125 YGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVF 184
Query: 199 ELLSLALGLKAEHL-LEIGCPKEYILLCQ--YYPPCPQPDLTLGATGHSDPSFLTILLQD 255
           + LS+ LGL+ + L  E+G  +E +L  +  YYP CPQP+L LG   H+D S LT +L +
Sbjct: 185 KALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHN 244
Query: 256 QIGGLQVFHDNQWVGVQPIVGGLVVNIGDFLQIISNDKFKSVKHRVVASQVGPRVSVPCF 315
            + GLQ+F++ +WV  + +   +V++IGD L+I+SN K+KS+ HR + ++   R+S   F
Sbjct: 245 MVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVF 304
Query: 316 FMGHNAEIPKS---YGPIKELTSAENP 339
                 E PK      P+ E+ S E+P
Sbjct: 305 -----CEPPKDKIVLKPLPEMVSVESP 326
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant Length = 325 Back     alignment and structure
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Manganese Complex) Length = 331 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query370
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 1e-142
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 1e-123
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 6e-77
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 7e-77
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 1e-68
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 1e-63
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score =  406 bits (1045), Expect = e-142
 Identities = 99/340 (29%), Positives = 175/340 (51%), Gaps = 19/340 (5%)

Query: 33  VKGLVDAGIVNIPRIFIRPPEEL-----VEELTSHQTNFQVPVIDLDGVRGNNL---EEI 84
           V+ L  +GI++IP+ +IRP EEL     V      +   QVP IDL  +  ++    E  
Sbjct: 7   VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 66

Query: 85  VDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGISKFNELDVELKKEFYTRDQTRNVR-FN 143
           +++++ A+  WG   ++NHGIP +++E + +   +F  L VE K+++     T  ++ + 
Sbjct: 67  IEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 126

Query: 144 SNFDLHYSRTANWRDTLTISTLASTNLDPN---EYPEVCRDAAREYIKNVTKLAETLFEL 200
           S    + S    W D            D +   + P    +A  EY K +  LA  +F+ 
Sbjct: 127 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKA 186

Query: 201 LSLALGLKAEHLLE-IGCPKE--YILLCQYYPPCPQPDLTLGATGHSDPSFLTILLQDQI 257
           LS+ LGL+ + L + +G  +E    +   YYP CPQP+L LG   H+D S LT +L + +
Sbjct: 187 LSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMV 246

Query: 258 GGLQVFHDNQWVGVQPIVGGLVVNIGDFLQIISNDKFKSVKHRVVASQVGPRVSVPCFFM 317
            GLQ+F++ +WV  + +   +V++IGD L+I+SN K+KS+ HR + ++   R+S   F  
Sbjct: 247 PGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCE 306

Query: 318 -GHNAEIPKSYGPIKELTSAENPPIYRDFLASEYFSKRFS 356
              +  +     P+ E+ S E+P  +     +++   +  
Sbjct: 307 PPKDKIV---LKPLPEMVSVESPAKFPPRTFAQHIEHKLF 343
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query370
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 93.68
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 92.7
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 83.67
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 83.33
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 82.05
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 80.04
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=100.00  E-value=5.9e-84  Score=626.62  Aligned_cols=330  Identities=29%  Similarity=0.501  Sum_probs=291.0

Q ss_pred             ccchHHHHhCCCCCCCccccCCCCCcchhhc---cC--CCCCCcceeeCCCCCCC---ChHHHHHHHHHHHHHcceEEEe
Q 017500           30 KAGVKGLVDAGIVNIPRIFIRPPEELVEELT---SH--QTNFQVPVIDLDGVRGN---NLEEIVDQVRAAAETWGFFQVV  101 (370)
Q Consensus        30 ~~~v~~l~~~g~~~vP~~~~~~~~~~~~~~~---~~--~~~~~iPvIDls~l~~~---~~~~~~~~l~~A~~~~GFF~v~  101 (370)
                      ..+||+|+++|+.+||++|++|+++++....   ..  ....+||||||+.+.++   .+.+++++|.+||++||||||+
T Consensus         4 ~~~v~~l~~~~~~~vP~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~v~   83 (356)
T 1gp6_A            4 VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLI   83 (356)
T ss_dssp             CCCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             cccHHHHHhcCCCCCCHHhcCCchhcccccccccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEEEe
Confidence            4689999999999999999999887764211   00  01246999999998643   3567899999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHHhhcccCC-CCCcccccCCCCcccCCCCccccccccccCCC-----CCCCCCC
Q 017500          102 NHGIPLNVLEEMIEGISKFNELDVELKKEFYTRDQ-TRNVRFNSNFDLHYSRTANWRDTLTISTLAST-----NLDPNEY  175 (370)
Q Consensus       102 nHGi~~~l~~~~~~~~~~fF~lP~eeK~~~~~~~~-~~~~gY~~~~~~~~~~~~d~~e~~~~~~~~p~-----~~~p~~~  175 (370)
                      ||||+.++++++++++++||+||.|+|+++..... ....||+...........||+|.|+++ ..|.     ..||+. 
T Consensus        84 nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~-~~p~~~~~~~~wP~~-  161 (356)
T 1gp6_A           84 NHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHL-AYPEEKRDLSIWPKT-  161 (356)
T ss_dssp             SCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEE-EESGGGCCGGGSCCS-
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeee-cCCccccccccCCCc-
Confidence            99999999999999999999999999999876544 456899876655556678999999983 3231     269976 


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhhhcC---CcceeeccccCCCCCCCCCCCCCCCcccCCceEEE
Q 017500          176 PEVCRDAAREYIKNVTKLAETLFELLSLALGLKAEHLLEIGC---PKEYILLCQYYPPCPQPDLTLGATGHSDPSFLTIL  252 (370)
Q Consensus       176 P~~fr~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~---~~~~~l~~~yYP~~~~~~~~~g~~~HtD~~~lTlL  252 (370)
                      ++.||+++++|+++|.+|+.+||++||++|||++++|.+.+.   .....+|+||||+|++++..+|+++|||+|+||||
T Consensus       162 ~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL  241 (356)
T 1gp6_A          162 PSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFI  241 (356)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEE
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcccCCccceeeeeecCCCCCcccccCcCCccCCCeEEEE
Confidence            567999999999999999999999999999999999998765   35667999999999999999999999999999999


Q ss_pred             ecCCCCCeEEEeCCeEEEecCCCCeEEEEeccchhhhcCCeeccccceeccCCCCCeeeEEEeecCCCCCCCc-eeecCc
Q 017500          253 LQDQIGGLQVFHDNQWVGVQPIVGGLVVNIGDFLQIISNDKFKSVKHRVVASQVGPRVSVPCFFMGHNAEIPK-SYGPIK  331 (370)
Q Consensus       253 ~qd~~~GLqV~~~g~W~~V~p~pg~lvVnvGD~Le~~SnG~~kS~~HRV~~~~~~~R~Si~~F~~P~~d~~d~-~i~Pl~  331 (370)
                      +||+++||||+++|+|++|+|+||++||||||+||+||||+|||++|||++++.++|||++||++|+.   |+ +|+|++
T Consensus       242 ~qd~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv~~~~~~R~Sia~F~~P~~---d~~~i~pl~  318 (356)
T 1gp6_A          242 LHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPK---DKIVLKPLP  318 (356)
T ss_dssp             EECSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCT---TTCEECCCG
T ss_pred             EEcCCCCeEEecCCcEEECcCCCCeEEEEeccHHHHhcCCEeeccCceecCCCCCCEEEEEEeecCCC---CCcEEeCCh
Confidence            99999999999999999999999999999999999999999999999999998889999999999998   78 999999


Q ss_pred             cccCCCCCCCCCCccHHHHHHHHHhcCCCCCCc
Q 017500          332 ELTSAENPPIYRDFLASEYFSKRFSTVLDDNSP  364 (370)
Q Consensus       332 ~~v~~~~p~~y~~~~~~ey~~~~~~~~~~~~~~  364 (370)
                      +|+++++|++|+++||+||+..++++++++|..
T Consensus       319 ~~~~~~~p~~y~~~t~~eyl~~~~~~~~d~~~~  351 (356)
T 1gp6_A          319 EMVSVESPAKFPPRTFAQHIEHKLFGKEQEELV  351 (356)
T ss_dssp             GGCCSSSCCSSCCEEHHHHHHHHHHHHHHHHC-
T ss_pred             hhcCCCCCccCCCccHHHHHHHHHHhccCcchh
Confidence            999999999999999999999999887776643
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 370
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 1e-71
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 2e-58
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 8e-52
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 6e-40
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  225 bits (573), Expect = 1e-71
 Identities = 98/340 (28%), Positives = 171/340 (50%), Gaps = 17/340 (5%)

Query: 31  AGVKGLVDAGIVNIPRIFIRPPEEL-----VEELTSHQTNFQVPVIDLDGVRGNN---LE 82
             V+ L  +GI++IP+ +IRP EEL     V      +   QVP IDL  +  ++    E
Sbjct: 4   ERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRE 63

Query: 83  EIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGISKFNELDVELKKEFYTRDQTRNVR- 141
             +++++ A+  WG   ++NHGIP +++E + +   +F  L VE K+++     T  ++ 
Sbjct: 64  NCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQG 123

Query: 142 FNSNFDLHYSRTANWRDTLTISTLASTNLDPN---EYPEVCRDAAREYIKNVTKLAETLF 198
           + S    + S    W D            D +   + P    +A  EY K +  LA  +F
Sbjct: 124 YGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVF 183

Query: 199 ELLSLALGLKAEHLLEIGCPKEYILLCQYYP---PCPQPDLTLGATGHSDPSFLTILLQD 255
           + LS+ LGL+ + L +     E +LL         CPQP+L LG   H+D S LT +L +
Sbjct: 184 KALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHN 243

Query: 256 QIGGLQVFHDNQWVGVQPIVGGLVVNIGDFLQIISNDKFKSVKHRVVASQVGPRVSVPCF 315
            + GLQ+F++ +WV  + +   +V++IGD L+I+SN K+KS+ HR + ++   R+S   F
Sbjct: 244 MVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVF 303

Query: 316 FMGHNAEIPKSYGPIKELTSAENPPIYRDFLASEYFSKRF 355
                 +I     P+ E+ S E+P  +     +++   + 
Sbjct: 304 CEPPKDKIV--LKPLPEMVSVESPAKFPPRTFAQHIEHKL 341
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query370
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 89.62
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.3e-78  Score=586.58  Aligned_cols=324  Identities=30%  Similarity=0.508  Sum_probs=277.5

Q ss_pred             ccchHHHHhCCCCCCCccccCCCCCcchhh-----ccCCCCCCcceeeCCCCCCC---ChHHHHHHHHHHHHHcceEEEe
Q 017500           30 KAGVKGLVDAGIVNIPRIFIRPPEELVEEL-----TSHQTNFQVPVIDLDGVRGN---NLEEIVDQVRAAAETWGFFQVV  101 (370)
Q Consensus        30 ~~~v~~l~~~g~~~vP~~~~~~~~~~~~~~-----~~~~~~~~iPvIDls~l~~~---~~~~~~~~l~~A~~~~GFF~v~  101 (370)
                      ..+||+|+++|+++||++|++|+++++..+     ..+....+||||||+.+.++   .+++++++|.+||++||||||+
T Consensus         3 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~   82 (349)
T d1gp6a_           3 VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLI   82 (349)
T ss_dssp             CCCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             CcchHHHHhCCCccCCHhhcCChhhcCCCCccccccccCCCCCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEEEEE
Confidence            358999999999999999999999988641     12456678999999998754   4678999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHHhhcccCCCC-CcccccCCCCcccCCCCccccccccccCC-----CCCCCCCC
Q 017500          102 NHGIPLNVLEEMIEGISKFNELDVELKKEFYTRDQTR-NVRFNSNFDLHYSRTANWRDTLTISTLAS-----TNLDPNEY  175 (370)
Q Consensus       102 nHGi~~~l~~~~~~~~~~fF~lP~eeK~~~~~~~~~~-~~gY~~~~~~~~~~~~d~~e~~~~~~~~p-----~~~~p~~~  175 (370)
                      ||||+.++++++++++++||+||.|+|+++....... ..+|+...........+|.+.+.. ...+     ...||.. 
T Consensus        83 nHGI~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~n~wp~~-  160 (349)
T d1gp6a_          83 NHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFH-LAYPEEKRDLSIWPKT-  160 (349)
T ss_dssp             SCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEE-EEESGGGCCGGGSCCS-
T ss_pred             ccCCCHHHHHHHHHHHHHHHcCCHHHHhhhhcccccCCccccccccccccccccchhhhhcc-cccccccccccccccc-
Confidence            9999999999999999999999999999986543332 234444433344455667665443 2111     1268876 


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhhhcC---CcceeeccccCCCCCCCCCCCCCCCcccCCceEEE
Q 017500          176 PEVCRDAAREYIKNVTKLAETLFELLSLALGLKAEHLLEIGC---PKEYILLCQYYPPCPQPDLTLGATGHSDPSFLTIL  252 (370)
Q Consensus       176 P~~fr~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~---~~~~~l~~~yYP~~~~~~~~~g~~~HtD~~~lTlL  252 (370)
                      ++.|++.+++|+++|.+|+.+|+++++++||+++++|.+...   .....+|++|||+|+.++..+|+++|||+|+||||
T Consensus       161 ~~~f~e~~~~~~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~g~lTlL  240 (349)
T d1gp6a_         161 PSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFI  240 (349)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEE
T ss_pred             cchHHHHHHHHHHHHHHHHHhhhHHHHHHcCCCHHHHHHHhccccccceeeeecccccccchhhccccccCCCCcceEEE
Confidence            456999999999999999999999999999999999987543   23456899999999999999999999999999999


Q ss_pred             ecCCCCCeEEEeCCeEEEecCCCCeEEEEeccchhhhcCCeeccccceeccCCCCCeeeEEEeecCCCCCCCceeecCcc
Q 017500          253 LQDQIGGLQVFHDNQWVGVQPIVGGLVVNIGDFLQIISNDKFKSVKHRVVASQVGPRVSVPCFFMGHNAEIPKSYGPIKE  332 (370)
Q Consensus       253 ~qd~~~GLqV~~~g~W~~V~p~pg~lvVnvGD~Le~~SnG~~kS~~HRV~~~~~~~R~Si~~F~~P~~d~~d~~i~Pl~~  332 (370)
                      +|+.++||||+++|+|++|+|.+|++|||+||+||+||||+|||++|||+.++.++||||+||++|+.|  .++++|+|+
T Consensus       241 ~q~~~~GLqv~~~g~W~~V~p~~~a~vVNvGD~l~~~TnG~~~St~HRVv~~~~~~R~Si~~F~~p~~d--~~i~~pl~~  318 (349)
T d1gp6a_         241 LHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKD--KIVLKPLPE  318 (349)
T ss_dssp             EECSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTT--TCEECCCGG
T ss_pred             eccCCcceeeecCCceEEccCCCCCeeeeHHhHHHHHhCCCccCcCccccCCCCCCeEEEEEEecCCCc--ceeecCCHH
Confidence            999999999999999999999999999999999999999999999999999988899999999999983  245699999


Q ss_pred             ccCCCCCCCCCCccHHHHHHHHHhc
Q 017500          333 LTSAENPPIYRDFLASEYFSKRFST  357 (370)
Q Consensus       333 ~v~~~~p~~y~~~~~~ey~~~~~~~  357 (370)
                      ||++++|++|+++|++||++.++..
T Consensus       319 ~v~~~~p~~y~~~t~~e~~~~rl~~  343 (349)
T d1gp6a_         319 MVSVESPAKFPPRTFAQHIEHKLFG  343 (349)
T ss_dssp             GCCSSSCCSSCCEEHHHHHHHHHHH
T ss_pred             HcCCCCCCCCCCccHHHHHHHHHhc
Confidence            9999999999999999999998743
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure