Citrus Sinensis ID: 017524

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370
MLMLVDCSKCRTTLQLPPGAQSIRCAICQAITHIADPRSGPPPPSSSSSSSYQPGHVPPSAVAPSPYNHAPPGQPPHAQGRKRALIVGVSYRHTNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLVRPLPRGARLHAIIDACHSGTVLDLPFLCRMDRQGKYIWEDHRPRSGMWKGTSGGEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAIERGHGATYGSMLNSMRSTIRNTDSGSELSGAGGLVTSLVTMLLTGGSLSGGFRQEPQLTANEPFDVYTKPFSL
cccEEEcccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccHHHHHHHHHHHHHHcccccccEEEcccccccccccccHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccccccccccccccccccccccccHHHHHHHHcccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccc
ccEEEEcccccccccccccccEEEEcHccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEccccccccccHHHHHHHHHHHHHHccccHccEEEEEcccccccccccHHHHHHHHHHHHcccccccEEEEEEccccccccccccccccccccEEEEccccccccEEcHHHHHHHHcccccccEEEEEEEccccccEEcccEEEEEcccEEEccccccccccccccccccEEEEEEccccccccccHHHcccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccccccEEEEEEEcccccccccccccccccccccccccccccc
mlmlvdcskcrttlqlppgaqSIRCAICQAIthiadprsgppppsssssssyqpghvppsavapspynhappgqpphaqgrkRALIVGVSYrhtnhelkgcINDARCMKYMLTnrfkfpessivmlteedpdplkrptkyNMRMALYWLIqgcqpgdsllfhfsghgsqqrnyngeevdgydetlcpvdfetqgmivddeinttlvrplprgaRLHAIIDAchsgtvldlpflcrmdrqgkyiwedhrprsgmwkgtsggeaisfsgcddnqtsadtsALSKITSTGAMTYSFIQAIERGHGATYGSMLNSMRstirntdsgselsgagGLVTSLVTMLLtggslsggfrqepqltanepfdvytkpfsl
MLMLVDCSKCRttlqlppgaQSIRCAICQAITHIADPRSGPPPPSSSSSSSYQPGHVPPSAVAPSPYNHAPPGQPPHAQGRKRALIVGVSYRhtnhelkgcinDARCMKYMLTNRFkfpessivmlteedpdplkrPTKYNMRMALYWLIQGCQPGDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLVRPLPRGARLHAIIDACHSGTVLDLPFLCRMDRQGKyiwedhrprsgMWKGTSGGEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAIERGHGATYGSMLNSMRSTIRNTDSGSELSGAGGLVTSLVTMLLTGGSLSGgfrqepqltanepfdvytkpfsl
MLMLVDCSKCRTTLQLPPGAQSIRCAICQAITHIADprsgppppsssssssYQPGHVPPSAVAPSPYNHAPPGQPPHAQGRKRALIVGVSYRHTNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLVRPLPRGARLHAIIDACHSGTVLDLPFLCRMDRQGKYIWEDHRPRSGMWKGTSGGEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAIERGHGATYGSMLNSMRSTIRNTDSGSELSGAgglvtslvtmlltggslsggFRQEPQLTANEPFDVYTKPFSL
***LVDCSKCRTTLQLPPGAQSIRCAICQAITHI*************************************************ALIVGVSYRHTNHELKGCINDARCMKYMLTNRFKFPESSIVMLT**********TKYNMRMALYWLIQGCQPGDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLVRPLPRGARLHAIIDACHSGTVLDLPFLCRMDRQGKYIWEDHR*****W*****************************TSTGAMTYSFIQAIERGHGATYG**********************GGLVTSLVTMLLTGGSL*************************
*LMLVDCSKCRTTLQLPPGAQSIRCAICQAI************************************************GRKRALIVGVSYRHTNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLVRPLPRGARLHAIIDACHSGTVLDLPFLCRMDRQGKYIWEDHRPRSGMWKGTSGGEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAIERGHGATYGSMLNSMRSTI******************LVTMLLTGGSLSGGFRQEPQLTANEPFDVYTKPFSL
MLMLVDCSKCRTTLQLPPGAQSIRCAICQAITHIAD************************AVAPSPYNH************KRALIVGVSYRHTNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLVRPLPRGARLHAIIDACHSGTVLDLPFLCRMDRQGKYIWEDHRPRSGMWKGTSGGEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAIERGHGATYGSMLNSMRSTIR*********GAGGLVTSLVTMLLTGGSLSGGFRQEPQLTANEPFDVYTKPFSL
MLMLVDCSKCRTTLQLPPGAQSIRCAICQAITHIADP*******************************HAPPGQPPHAQGRKRALIVGVSYRHTNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLVRPLPRGARLHAIIDACHSGTVLDLPFLCRMDRQGKYIWEDH**RSG**KGTSGGEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAIERGHGATYGSMLNSMRSTIRNTDSGSELSGAGGLVTSLVTMLLTGGSLSGGFRQEPQLTANEPFDVYTK*F**
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MLMLVDCSKCRTTLQLPPGAQSIRCAICQAITHIADPRSGPPPPSSSSSSSYQPGHVPPSAVAPSPYNHAPPGQPPHAQGRKRALIVGVSYRHTNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLVRPLPRGARLHAIIDACHSGTVLDLPFLCRMDRQGKYIWEDHRPRSGMWKGTSGGEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAIERGHGATYGSMLNSMRSTIRNTDSGSELSGAGGLVTSLVTMLLTGGSLSGGFRQEPQLTANEPFDVYTKPFSL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query370 2.2.26 [Sep-21-2011]
Q7XJE6367 Metacaspase-1 OS=Arabidop yes no 0.954 0.961 0.707 1e-146
Q7XJE5418 Metacaspase-2 OS=Arabidop no no 0.991 0.877 0.572 1e-126
Q9FMG1362 Metacaspase-3 OS=Arabidop no no 0.740 0.756 0.510 5e-80
Q75B43452 Metacaspase-1 OS=Ashbya g yes no 0.683 0.559 0.371 1e-53
Q4PEQ5402 Metacaspase-1 OS=Ustilago N/A no 0.781 0.718 0.331 6e-50
Q7S4N5441 Metacaspase-1B OS=Neurosp N/A no 0.637 0.535 0.370 7e-50
O74477425 Metacaspase-1 OS=Schizosa yes no 0.789 0.687 0.338 1e-49
A5D9W7410 Metacaspase-1 OS=Meyerozy N/A no 0.637 0.575 0.376 3e-48
A6SDT7431 Metacaspase-1 OS=Botryoti N/A no 0.635 0.545 0.361 1e-47
A7F075432 Metacaspase-1 OS=Scleroti N/A no 0.635 0.543 0.361 1e-47
>sp|Q7XJE6|MCA1_ARATH Metacaspase-1 OS=Arabidopsis thaliana GN=AMC1 PE=1 SV=1 Back     alignment and function desciption
 Score =  519 bits (1337), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 261/369 (70%), Positives = 304/369 (82%), Gaps = 16/369 (4%)

Query: 3   MLVDCSKCRTTLQLPPGAQSIRCAICQAITHIADPRSGPPPPSSSSSSSYQPGHVPPSAV 62
           MLV+CS CRT LQLP GA+SIRCA+CQA+THIADPR+ PPP  SS+ S            
Sbjct: 14  MLVNCSGCRTPLQLPSGARSIRCALCQAVTHIADPRTAPPPQPSSAPSPPP--------- 64

Query: 63  APSPYNHAPPGQPPHAQGRKRALIVGVSYRHTNHELKGCINDARCMKYMLTNRFKFPESS 122
                 HAPPGQ PH  GRKRA+I G+SYR + HELKGCINDA+CM+++L N+FKF   S
Sbjct: 65  ----QIHAPPGQLPHPHGRKRAVICGISYRFSRHELKGCINDAKCMRHLLINKFKFSPDS 120

Query: 123 IVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHGSQQRNYNGEEVDGYD 182
           I+MLTEE+ DP + PTK NMRMALYWL+QGC  GDSL+FH+SGHGS+QRNYNG+EVDGYD
Sbjct: 121 ILMLTEEETDPYRIPTKQNMRMALYWLVQGCTAGDSLVFHYSGHGSRQRNYNGDEVDGYD 180

Query: 183 ETLCPVDFETQGMIVDDEINTTLVRPLPRGARLHAIIDACHSGTVLDLPFLCRMDRQGKY 242
           ETLCP+DFETQGMIVDDEIN T+VRPLP G +LH+IIDACHSGTVLDLPFLCRM+R G+Y
Sbjct: 181 ETLCPLDFETQGMIVDDEINATIVRPLPHGVKLHSIIDACHSGTVLDLPFLCRMNRAGQY 240

Query: 243 IWEDHRPRSGMWKGTSGGEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAIER-GH 301
           +WEDHRPRSG+WKGT+GGEAIS SGCDD+QTSADTSALSKITSTGAMT+ FIQAIER   
Sbjct: 241 VWEDHRPRSGLWKGTAGGEAISISGCDDDQTSADTSALSKITSTGAMTFCFIQAIERSAQ 300

Query: 302 GATYGSMLNSMRSTIRNTDSGSELSGAGGLVTSLVTMLLTGGSLSGGFRQEPQLTANEPF 361
           G TYGS+LNSMR+TIRNT +    SG   +VT++++MLLTGGS  GG RQEPQLTA + F
Sbjct: 301 GTTYGSLLNSMRTTIRNTGNDGGGSGG--VVTTVLSMLLTGGSAIGGLRQEPQLTACQTF 358

Query: 362 DVYTKPFSL 370
           DVY KPF+L
Sbjct: 359 DVYAKPFTL 367
Cysteine protease that cleaves specifically after arginine or lysine residues. Does not cleave caspase-specific substrates. Acts as a positive regulator of cell death. Required for both oxidative stress cell death response and hypersensitive cell death response mediated by immune response.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: -
>sp|Q7XJE5|MCA2_ARATH Metacaspase-2 OS=Arabidopsis thaliana GN=AMC2 PE=1 SV=1 Back     alignment and function description
>sp|Q9FMG1|MCA3_ARATH Metacaspase-3 OS=Arabidopsis thaliana GN=AMC3 PE=2 SV=1 Back     alignment and function description
>sp|Q75B43|MCA1_ASHGO Metacaspase-1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=MCA1 PE=3 SV=1 Back     alignment and function description
>sp|Q4PEQ5|MCA1_USTMA Metacaspase-1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=MCA1 PE=3 SV=1 Back     alignment and function description
>sp|Q7S4N5|MCA1B_NEUCR Metacaspase-1B OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=mca-2 PE=3 SV=1 Back     alignment and function description
>sp|O74477|MCA1_SCHPO Metacaspase-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pca1 PE=2 SV=1 Back     alignment and function description
>sp|A5D9W7|MCA1_PICGU Metacaspase-1 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=MCA1 PE=3 SV=2 Back     alignment and function description
>sp|A6SDT7|MCA1_BOTFB Metacaspase-1 OS=Botryotinia fuckeliana (strain B05.10) GN=casA PE=3 SV=1 Back     alignment and function description
>sp|A7F075|MCA1_SCLS1 Metacaspase-1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=casA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query370
255539965367 caspase, putative [Ricinus communis] gi| 0.981 0.989 0.770 1e-166
225454952362 PREDICTED: metacaspase-1 [Vitis vinifera 0.978 1.0 0.745 1e-161
224114627372 predicted protein [Populus trichocarpa] 0.989 0.983 0.736 1e-160
224122278368 predicted protein [Populus trichocarpa] 0.983 0.989 0.733 1e-157
225453303370 PREDICTED: metacaspase-1-like [Vitis vin 0.983 0.983 0.731 1e-156
297734653411 unnamed protein product [Vitis vinifera] 0.975 0.878 0.740 1e-156
224114623349 predicted protein [Populus trichocarpa] 0.932 0.988 0.711 1e-153
449487560367 PREDICTED: metacaspase-1-like [Cucumis s 0.970 0.978 0.725 1e-153
449432362367 PREDICTED: metacaspase-1-like [Cucumis s 0.970 0.978 0.720 1e-152
118486435366 unknown [Populus trichocarpa] 0.972 0.983 0.710 1e-150
>gi|255539965|ref|XP_002511047.1| caspase, putative [Ricinus communis] gi|223550162|gb|EEF51649.1| caspase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  592 bits (1526), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 288/374 (77%), Positives = 326/374 (87%), Gaps = 11/374 (2%)

Query: 1   MLMLVDCSKCRTTLQLPPGAQSIRCAICQAITHIADPRSGPPPPSSSSSSSYQPGHVPPS 60
           M MLVDCS CRT LQLPPGA+SIRCAIC AIT +ADPRSGPPPP  SSS  +   H PP 
Sbjct: 1   MYMLVDCSNCRTPLQLPPGAKSIRCAICHAITLVADPRSGPPPPHHSSSGQH---HYPPP 57

Query: 61  ----AVAPSPYNHAPPGQPPHAQGRKRALIVGVSYRHTNHELKGCINDARCMKYMLTNRF 116
               A++PSPYNHAP   PP + G KRA+I G+SY++T +ELKGCINDA+CMKY+L N+F
Sbjct: 58  LRSPAISPSPYNHAPSPPPPASHGAKRAVICGISYKNTRNELKGCINDAKCMKYLLVNKF 117

Query: 117 KFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHGSQQRNYNGE 176
           KFPESSI+MLTEE+ DP +RPTK NMRMALYWL+QGC+PGDSL+FHFSGHGSQQRNY+G+
Sbjct: 118 KFPESSILMLTEEETDPYRRPTKNNMRMALYWLVQGCRPGDSLVFHFSGHGSQQRNYSGD 177

Query: 177 EVDGYDETLCPVDFETQGMIVDDEINTTLVRPLPRGARLHAIIDACHSGTVLDLPFLCRM 236
           EVDGYDETLCP DFETQGMIVDDEIN T+VRPLPRG +LHAIIDACHSGTVLDLP+LCRM
Sbjct: 178 EVDGYDETLCPTDFETQGMIVDDEINATIVRPLPRGVKLHAIIDACHSGTVLDLPYLCRM 237

Query: 237 DRQGKYIWEDHRPRSGMWKGTSGGEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQA 296
           DR G+Y WEDHRPR+G+ KGT+GGEAISFSGCDDNQTSADTSALS++TSTGAMTYSFIQA
Sbjct: 238 DRNGRYGWEDHRPRTGVSKGTNGGEAISFSGCDDNQTSADTSALSRVTSTGAMTYSFIQA 297

Query: 297 IERGHGATYGSMLNSMRSTIRNTDSGSELSGAGGLVTSLVTMLLTGGSLSGGFRQEPQLT 356
           IERGH  TYG+MLN+MRSTI+N D   +    GG+VTSL+TMLLTGGSLSGG RQ PQLT
Sbjct: 298 IERGHATTYGNMLNAMRSTIKNVDPAVD----GGIVTSLLTMLLTGGSLSGGLRQVPQLT 353

Query: 357 ANEPFDVYTKPFSL 370
           ANEPFDVY+KPFSL
Sbjct: 354 ANEPFDVYSKPFSL 367

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225454952|ref|XP_002280421.1| PREDICTED: metacaspase-1 [Vitis vinifera] gi|297744960|emb|CBI38552.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224114627|ref|XP_002332327.1| predicted protein [Populus trichocarpa] gi|222832574|gb|EEE71051.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224122278|ref|XP_002318795.1| predicted protein [Populus trichocarpa] gi|222859468|gb|EEE97015.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225453303|ref|XP_002268524.1| PREDICTED: metacaspase-1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297734653|emb|CBI16704.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224114623|ref|XP_002332326.1| predicted protein [Populus trichocarpa] gi|222832573|gb|EEE71050.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449487560|ref|XP_004157687.1| PREDICTED: metacaspase-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449432362|ref|XP_004133968.1| PREDICTED: metacaspase-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|118486435|gb|ABK95057.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query370
TAIR|locus:2204798367 MC1 "metacaspase 1" [Arabidops 0.954 0.961 0.672 6.9e-134
TAIR|locus:2117288418 MC2 "metacaspase 2" [Arabidops 0.843 0.746 0.620 2.8e-122
TAIR|locus:2173398362 MC3 "metacaspase 3" [Arabidops 0.935 0.955 0.438 3.9e-76
UNIPROTKB|A4QTY2396 MCA1 "Metacaspase-1" [Magnapor 0.475 0.444 0.428 9.5e-60
POMBASE|SPCC1840.04425 pca1 "metacaspase Pca1" [Schiz 0.416 0.362 0.461 9.7e-53
SGD|S000005723432 MCA1 "Ca2+-dependent cysteine 0.472 0.405 0.458 2e-52
CGD|CAL0003470448 MCA1 [Candida albicans (taxid: 0.427 0.352 0.433 2.9e-52
UNIPROTKB|Q5ANA8448 MCA1 "Metacaspase-1" [Candida 0.427 0.352 0.433 2.9e-52
ASPGD|ASPL0000043471420 AN2503 [Emericella nidulans (t 0.470 0.414 0.416 7.6e-46
TAIR|locus:2207430 410 MC5 "metacaspase 5" [Arabidops 0.386 0.348 0.409 3.3e-30
TAIR|locus:2204798 MC1 "metacaspase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1312 (466.9 bits), Expect = 6.9e-134, P = 6.9e-134
 Identities = 248/369 (67%), Positives = 287/369 (77%)

Query:     3 MLVDCSKCRTTLQLPPGAQSIRCAICQAITHIADXXXXXXXXXXXXXXXYQPGHVPPSAV 62
             MLV+CS CRT LQLP GA+SIRCA+CQA+THIAD                 P   P SA 
Sbjct:    14 MLVNCSGCRTPLQLPSGARSIRCALCQAVTHIADPRTA-------------PPPQPSSAP 60

Query:    63 APSPYNHAPPGQPPHAQGRKRALIVGVSYRHTNHELKGCINDARCMKYMLTNRFKFPESS 122
             +P P  HAPPGQ PH  GRKRA+I G+SYR + HELKGCINDA+CM+++L N+FKF   S
Sbjct:    61 SPPPQIHAPPGQLPHPHGRKRAVICGISYRFSRHELKGCINDAKCMRHLLINKFKFSPDS 120

Query:   123 IVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHGSQQRNYNGEEVDGYD 182
             I+MLTEE+ DP + PTK NMRMALYWL+QGC  GDSL+FH+SGHGS+QRNYNG+EVDGYD
Sbjct:   121 ILMLTEEETDPYRIPTKQNMRMALYWLVQGCTAGDSLVFHYSGHGSRQRNYNGDEVDGYD 180

Query:   183 ETLCPVDFETQGMIVDDEINTTLVRPLPRGARLHAIIDACHSGTVLDLPFLCRMDRQGKY 242
             ETLCP+DFETQGMIVDDEIN T+VRPLP G +LH+IIDACHSGTVLDLPFLCRM+R G+Y
Sbjct:   181 ETLCPLDFETQGMIVDDEINATIVRPLPHGVKLHSIIDACHSGTVLDLPFLCRMNRAGQY 240

Query:   243 IWEDHRPRSGMWKGTSGGEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAIERG-H 301
             +WEDHRPRSG+WKGT+GGEAIS SGCDD+QTSADTSALSKITSTGAMT+ FIQAIER   
Sbjct:   241 VWEDHRPRSGLWKGTAGGEAISISGCDDDQTSADTSALSKITSTGAMTFCFIQAIERSAQ 300

Query:   302 GATYGSMLNSMRSTIRNTDSGSELSGAXXXXXXXXXXXXXXXXXXXXFRQEPQLTANEPF 361
             G TYGS+LNSMR+TIRNT  G++  G+                     RQEPQLTA + F
Sbjct:   301 GTTYGSLLNSMRTTIRNT--GNDGGGSGGVVTTVLSMLLTGGSAIGGLRQEPQLTACQTF 358

Query:   362 DVYTKPFSL 370
             DVY KPF+L
Sbjct:   359 DVYAKPFTL 367
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0004197 "cysteine-type endopeptidase activity" evidence=IDA
GO:0043068 "positive regulation of programmed cell death" evidence=IGI;IDA
GO:0005515 "protein binding" evidence=IPI
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0009697 "salicylic acid biosynthetic process" evidence=RCA
GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA
GO:0031348 "negative regulation of defense response" evidence=RCA
GO:0043069 "negative regulation of programmed cell death" evidence=RCA
GO:0045087 "innate immune response" evidence=RCA
TAIR|locus:2117288 MC2 "metacaspase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173398 MC3 "metacaspase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|A4QTY2 MCA1 "Metacaspase-1" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
POMBASE|SPCC1840.04 pca1 "metacaspase Pca1" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
SGD|S000005723 MCA1 "Ca2+-dependent cysteine protease" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
CGD|CAL0003470 MCA1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ANA8 MCA1 "Metacaspase-1" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
ASPGD|ASPL0000043471 AN2503 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
TAIR|locus:2207430 MC5 "metacaspase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7XJE6MCA1_ARATH3, ., 4, ., 2, 2, ., -0.70730.95400.9618yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.220.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00014158001
SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (362 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query370
pfam00656228 pfam00656, Peptidase_C14, Caspase domain 1e-43
TIGR0105331 TIGR01053, LSD1, zinc finger domain, LSD1 subclass 6e-10
pfam0694325 pfam06943, zf-LSD1, LSD1 zinc finger 2e-07
>gnl|CDD|216047 pfam00656, Peptidase_C14, Caspase domain Back     alignment and domain information 
 Score =  150 bits (382), Expect = 1e-43
 Identities = 56/243 (23%), Positives = 81/243 (33%), Gaps = 32/243 (13%)

Query: 82  KRALIVGVSYRHTNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYN 141
             ALI+G +Y      L+GC NDA  +  +L  R  F           + +     T   
Sbjct: 1   GLALIIGNNYFGHAAPLRGCDNDAEALAKLLQ-RLGF-----------EVEVFDDLTAEE 48

Query: 142 MRMALYWLIQGCQPGDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEI 201
           +R AL        PGDS +  +SGHG Q   Y      G D  L PVD       +DD  
Sbjct: 49  IRRALREFAARADPGDSFVVVYSGHGVQGEVY------GGDGYLVPVDA------LDDVF 96

Query: 202 NTTLVRPLPRGARLHAIIDACHSGTVLDLPFLCRMDRQGKYIWEDHRPRSGMWKGTSGGE 261
           N      L    +L  IIDAC  G + D                D    +G+ K  +  +
Sbjct: 97  NGLNCPSLKGKPKL-FIIDACRGGPLDDGVKSDSGSSGESE-SVDDSEAAGLSKIPAPAD 154

Query: 262 AISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAI-ERGHGATYGSMLNSMRSTIRNTD 320
            +        Q S   +      S      +  Q + E   G     +L  +   + +  
Sbjct: 155 FLVAYSTTPGQVSYRGT-----GSGSWFIQALCQVLREYAPGLDLLDILTRVNRKVADAT 209

Query: 321 SGS 323
              
Sbjct: 210 GKK 212

Length = 228
>gnl|CDD|130125 TIGR01053, LSD1, zinc finger domain, LSD1 subclass Back     alignment and domain information
>gnl|CDD|191646 pfam06943, zf-LSD1, LSD1 zinc finger Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 370
KOG1546362 consensus Metacaspase involved in regulation of ap 100.0
PF00656248 Peptidase_C14: Caspase domain; InterPro: IPR011600 100.0
cd00032243 CASc Caspase, interleukin-1 beta converting enzyme 99.81
smart00115241 CASc Caspase, interleukin-1 beta converting enzyme 99.78
PF01650256 Peptidase_C13: Peptidase C13 family; InterPro: IPR 99.5
COG4249380 Uncharacterized protein containing caspase domain 99.45
TIGR0105331 LSD1 zinc finger domain, LSD1 subclass. This model 99.02
PF0694325 zf-LSD1: LSD1 zinc finger; InterPro: IPR005735 Zin 98.83
KOG1349309 consensus Gpi-anchor transamidase [Posttranslation 98.31
PF14538154 Raptor_N: Raptor N-terminal CASPase like domain 98.26
KOG1348 477 consensus Asparaginyl peptidases [Posttranslationa 98.1
COG5206382 GPI8 Glycosylphosphatidylinositol transamidase (GP 97.78
COG4249 380 Uncharacterized protein containing caspase domain 97.74
PF12770287 CHAT: CHAT domain 96.91
KOG1517 1387 consensus Guanine nucleotide binding protein MIP1 96.78
PF1371937 zinc_ribbon_5: zinc-ribbon domain 95.23
PF1371736 zinc_ribbon_4: zinc-ribbon domain 94.02
PF1012251 Mu-like_Com: Mu-like prophage protein Com; InterPr 92.99
TIGR0209838 MJ0042_CXXC MJ0042 family finger-like domain. This 92.31
PRK0039846 rpoP DNA-directed RNA polymerase subunit P; Provis 90.96
KOG1985 887 consensus Vesicle coat complex COPII, subunit SEC2 85.83
PF0481040 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: 84.17
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=6.8e-79  Score=574.09  Aligned_cols=318  Identities=46%  Similarity=0.829  Sum_probs=276.0

Q ss_pred             CCCcccCCCCCCccccCCCCceeeccccCceeeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCC
Q 017524            1 MLMLVDCSKCRTTLQLPPGAQSIRCAICQAITHIADPRSGPPPPSSSSSSSYQPGHVPPSAVAPSPYNHAPPGQPPHAQG   80 (370)
Q Consensus         1 ~~~~~~C~~C~~~l~~p~~a~~~~C~~C~~vt~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (370)
                      +.+.++|+ |++++|+||||+. ||+.||+||.+..++-+|||..+         +++.    |+|+   ||.++|...+
T Consensus         1 ~~~~~~~~-~~~p~~~pp~ar~-q~~~~~~~~~~~~~~~~ppP~~~---------~~~~----PpPq---~~~~~~~~~g   62 (362)
T KOG1546|consen    1 PNNLVGCN-CQRPMAPPPGARY-QCAGCHAVTQIAQPRIQPPPQPS---------SYPN----PPPQ---PPYQYPQMAG   62 (362)
T ss_pred             CCccccCC-CCCCCCCCCCCcc-cccccceeeeecccCcCCCCCCC---------CCCC----CCCC---CCCCCccccc
Confidence            35689998 9999999999999 99999999999987776555432         1111    1111   4567889999


Q ss_pred             ceEEEEEEecCCCCCCCCcchHHHHHHHHHHHHhccCCCCCceEEeccCCCCCCCCchHHHHHHHHHHHHHhCCCCCEEE
Q 017524           81 RKRALIVGVSYRHTNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLL  160 (370)
Q Consensus        81 ~k~ALlIGInY~~~~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~a~~gD~l~  160 (370)
                      ||+||||||||.++..+|+||||||++|+++|.++|||++++|++|||+++++.++||++||++||+|||+.+++||+||
T Consensus        63 krrAvLiGINY~gTk~ELrGCINDv~~M~~~Lv~rfGFs~ddI~~LtDt~~s~~~~PT~~Nir~Al~wLV~~aq~gD~Lv  142 (362)
T KOG1546|consen   63 KRRAVLIGINYPGTKNELRGCINDVHRMRKLLVERFGFSEDDILMLTDTDESPVRIPTGKNIRRALRWLVESAQPGDSLV  142 (362)
T ss_pred             cceEEEEeecCCCcHHHHhhhHHHHHHHHHHHHHhhCCChhheEEEecCCCcccccCcHHHHHHHHHHHHhcCCCCCEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeccccccCCCCCCCCCCcceeEEcccCCCCCcccHHHHHHhhcCcCCCCCeEEEEEcCCCCCCCCCcccccccc---
Q 017524          161 FHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLVRPLPRGARLHAIIDACHSGTVLDLPFLCRMD---  237 (370)
Q Consensus       161 fyfSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~ddeL~~~Lv~~l~~g~~l~~IlD~ChSG~~~~~p~~~~~~---  237 (370)
                      |||||||.+.++.+|||.|||||+|+|+|++.+|.|.|||+++.||++|++|+++++|+|+||||+++|+||+++++   
T Consensus       143 fHYSGHGtr~~~~~gDe~dG~DE~I~P~D~~t~G~iIdDe~~r~lV~plp~G~~lt~I~DSCHSGgliDlp~i~~~~~~i  222 (362)
T KOG1546|consen  143 FHYSGHGTRQPDTNGDEVDGYDETIVPCDHNTQGPIIDDEIFRILVRPLPKGCKLTAISDSCHSGGLIDLPEIERTKGVI  222 (362)
T ss_pred             EEecCCCCcCCCCCCCCCCCCcceeecccccccccccchHHHHHHHhccCCCceEEEEeecccCCCcccchhheeccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988   


Q ss_pred             cccccccccCCCCCCCcc-------------------------------------ccCCCCEEEEEecCCCCcccccccc
Q 017524          238 RQGKYIWEDHRPRSGMWK-------------------------------------GTSGGEAISFSGCDDNQTSADTSAL  280 (370)
Q Consensus       238 r~g~~~~~d~~~~~~~~~-------------------------------------~~~~~~~i~~Sac~~~Q~A~d~~~~  280 (370)
                      +++.+.||++++....|+                                     +.+..++|+||+|+++|+|+|+...
T Consensus       223 r~~~l~~e~~~d~l~~~tG~~~ge~~~i~~~l~d~f~~dts~~~~~~~~~~~~~~~~~~d~~illSgcqadqtSad~~~~  302 (362)
T KOG1546|consen  223 RNRNLPWEDHRDLLKAQTGTDGGEVGKIRGCLDDIFGEDTSPLPNGTIGDLGRQLKDSHDNGILLSGCQADQTSADASTY  302 (362)
T ss_pred             ccCccchHHhHHHHHhhcCCCCceeeeeecchhhhhcccCCCCCCcchhhhhhhcccCCCCceEEecccccccccccccC
Confidence            888888887664221111                                     1123568999999999999999987


Q ss_pred             CCCCCCChhHHHHHHHHhcCCC-CCHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhhhhcCCCCCCCCCCccccccCC
Q 017524          281 SKITSTGAMTYSFIQAIERGHG-ATYGSMLNSMRSTIRNTDSGSELSGAGGLVTSLVTMLLTGGSLSGGFRQEPQLTANE  359 (370)
Q Consensus       281 ~~~~~~G~fT~ali~aL~~~~~-~Ty~~Ll~~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~Pqlsss~  359 (370)
                      |.  ..|+|++|+.+.|.++++ ++..+|.-..|..++..                            +|.|+|||++|+
T Consensus       303 G~--~~gAms~Aiq~i~~~n~g~~~~~~lvl~~~~~~~~~----------------------------g~sQ~P~L~csd  352 (362)
T KOG1546|consen  303 GH--LYGAMSNAIQEILTENKGRITNKLLVLRARGALKKQ----------------------------GFSQEPGLYCSD  352 (362)
T ss_pred             Cc--chhHHHHHHHHHHhcCcccchhHHHHHHHhhhhhcc----------------------------CcccCccccCCc
Confidence            74  589999999999998765 45556666666666543                            378999999999


Q ss_pred             ccCCCCC
Q 017524          360 PFDVYTK  366 (370)
Q Consensus       360 ~~d~~~~  366 (370)
                      +||++..
T Consensus       353 ~~~~~~~  359 (362)
T KOG1546|consen  353 PFDVAPF  359 (362)
T ss_pred             cccccce
Confidence            9999643

>PF00656 Peptidase_C14: Caspase domain; InterPro: IPR011600 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis) Back     alignment and domain information
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues Back     alignment and domain information
>PF01650 Peptidase_C13: Peptidase C13 family; InterPro: IPR001096 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>COG4249 Uncharacterized protein containing caspase domain [General function prediction only] Back     alignment and domain information
>TIGR01053 LSD1 zinc finger domain, LSD1 subclass Back     alignment and domain information
>PF06943 zf-LSD1: LSD1 zinc finger; InterPro: IPR005735 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG1349 consensus Gpi-anchor transamidase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14538 Raptor_N: Raptor N-terminal CASPase like domain Back     alignment and domain information
>KOG1348 consensus Asparaginyl peptidases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5206 GPI8 Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4249 Uncharacterized protein containing caspase domain [General function prediction only] Back     alignment and domain information
>PF12770 CHAT: CHAT domain Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13719 zinc_ribbon_5: zinc-ribbon domain Back     alignment and domain information
>PF13717 zinc_ribbon_4: zinc-ribbon domain Back     alignment and domain information
>PF10122 Mu-like_Com: Mu-like prophage protein Com; InterPro: IPR019294 Members of this entry belong to the Com family of proteins that act as translational regulators of mom [, ] Back     alignment and domain information
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain Back     alignment and domain information
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional Back     alignment and domain information
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query370
4f6o_A350 Crystal Structure Of The Yeast Metacaspase Yca1 Len 1e-45
4af8_A367 The Structural Basis For Metacaspase Substrate Spec 2e-33
4afr_A367 The Structure Of Metacaspase 2 (C213a Mutant) From 3e-33
4afp_A367 The Structure Of Metacaspase 2 From T. Brucei Deter 5e-33
3bij_A285 Crystal Structure Of Protein Gsu0716 From Geobacter 1e-07
>pdb|4F6O|A Chain A, Crystal Structure Of The Yeast Metacaspase Yca1 Length = 350 Back     alignment and structure 
Iteration: 1

 Score =  180 bits (456), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 115/332 (34%), Positives = 171/332 (51%), Gaps = 71/332 (21%)
Query: 72  PGQPPHAQGRKRALIVGVSYRHTNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDP 131
           P Q     GR++ALI+G++Y  + ++L+GCINDA  +   LTN + +    IV+LT++  
Sbjct: 44  PYQYSQCTGRRKALIIGINYIGSKNQLRGCINDAHNIFNFLTNGYGYSSDDIVILTDDQN 103
Query: 132 DPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFE 191
           D ++ PT+ NM  A+ WL++  QP DSL  H+SGHG Q  + +G+E DG D+ + PVDFE
Sbjct: 104 DLVRVPTRANMIRAMQWLVKDAQPNDSLFLHYSGHGGQTEDLDGDEEDGMDDVIYPVDFE 163
Query: 192 TQGMIVDDEINTTLVRPLPRGARLHAIIDACHSGTVLDLPFLCRMDRQGK--YIWED--- 246
           TQG I+DDE++  +V+PL +G RL A+ D+CHSGTVLDLP+        K   IW+D   
Sbjct: 164 TQGPIIDDEMHDIMVKPLQQGVRLTALFDSCHSGTVLDLPYTYSTKGIIKEPNIWKDVGQ 223
Query: 247 -------------------------HRPRSGMWKGT----------SGGEAISFSGCDDN 271
                                       + GM              S  + +  SG  DN
Sbjct: 224 DGLQAAISYATGNRAALIGSLGSIFKTVKGGMGNNVDRERVRQIKFSAADVVMLSGSKDN 283
Query: 272 QTSADTSALSKITSTGAMTYSFIQAIERGHGATYGSMLNSMRSTIRNTDSGSELSGAXXX 331
           QTSAD  A+    +TGAM+++FI+ +      +Y S+L +MR          EL+G    
Sbjct: 284 QTSAD--AVEDGQNTGAMSHAFIKVMTLQPQQSYLSLLQNMR---------KELAGK--- 329
Query: 332 XXXXXXXXXXXXXXXXXFRQEPQLTANEPFDV 363
                            + Q+PQL+++ P DV
Sbjct: 330 -----------------YSQKPQLSSSHPIDV 344
>pdb|4AF8|A Chain A, The Structural Basis For Metacaspase Substrate Specificity And Activation Length = 367 Back     alignment and structure
>pdb|4AFR|A Chain A, The Structure Of Metacaspase 2 (C213a Mutant) From T. Brucei Length = 367 Back     alignment and structure
>pdb|4AFP|A Chain A, The Structure Of Metacaspase 2 From T. Brucei Determined In The Presence Of Samarium Length = 367 Back     alignment and structure
>pdb|3BIJ|A Chain A, Crystal Structure Of Protein Gsu0716 From Geobacter Sulfurreducens. Northeast Structural Genomics Target Gsr13 Length = 285 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query370
4af8_A367 Metacaspase MCA2; hydrolase, cysteine peptidase, c 1e-81
4f6o_A350 Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 2e-81
3bij_A285 Uncharacterized protein GSU0716; alpha-beta protei 5e-55
3uoa_B 390 Mucosa-associated lymphoid tissue lymphoma transl 7e-18
>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A 4afr_A Length = 367 Back     alignment and structure
 Score =  252 bits (645), Expect = 1e-81
 Identities = 98/377 (25%), Positives = 150/377 (39%), Gaps = 42/377 (11%)

Query: 3   MLVDCSKCRTTLQLPPGAQSIRCAICQAITHIADPRSGPPPPSSSSSSSYQPGHVPPS-- 60
            LV       +L                     +  S  P    +      P  V     
Sbjct: 13  GLVPGGSHMCSLITQLCDAGQLADYVGL--GWLNAVSSQPYLVQALGLQPPPRRVDVDAA 70

Query: 61  -AVAPSPYNHAPPGQPPHAQGRKRALIVGVSYRHTNHELKGCINDARCMKYMLTNRFKFP 119
              A   + H P    P      RAL +G++Y  T+  L GC ND + M   L  R    
Sbjct: 71  FRDAKGLHGHQPWVATPLPGQTVRALFIGINYYGTSAALSGCCNDVKQMLATLQKRGLPI 130

Query: 120 ESSIVMLTEE-DPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHGSQQRNYNGEEV 178
             +++++ E+  P    +PT+ N+   + WL++  +PGD L FH+SGHG+Q ++    + 
Sbjct: 131 NEAVILVDEDNFPGRTDQPTRDNIVRYMAWLVKDAKPGDVLFFHYSGHGTQCKSRGDSD- 189

Query: 179 DGYDETLCPVDFETQGMIVDDEINTTLVRPLPRGARLHAIIDACHSGTVLDLPFLCRMDR 238
           + YD+ + PVDF+  G IVDD+I+  L   LP   RL A+ D  HSG+++DLPF      
Sbjct: 190 EKYDQCIAPVDFQKSGCIVDDDIHKLLFSRLPEKVRLTAVFDCGHSGSIMDLPFTYVCSG 249

Query: 239 QGKYIWEDHRPRSGMWKGTSGGEAISFSGCDDNQTSADTSALSKI-----TSTGAMTYSF 293
             +     H  R        G   +  SGC D QTSAD    +        + GA T   
Sbjct: 250 GEQASGTPHMKRIREGNDVLGD-VMMISGCADEQTSADVKNTATFGTGSTGAGGAATQCI 308

Query: 294 IQAIERGHGATYGSMLNSMRSTIRNTDSGSELSGAGGLVTSLVTMLLTGGSLSGGFRQEP 353
              +      +YG +L   R  ++                               F+Q P
Sbjct: 309 TCMLMNNQSLSYGKLLIETRDMLKRK----------------------------RFKQVP 340

Query: 354 QLTANEPFDVYTKPFSL 370
           QL+A++  D+  + FSL
Sbjct: 341 QLSASKAIDLD-QTFSL 356
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae} Length = 350 Back     alignment and structure
>3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca} Length = 285 Back     alignment and structure
>3uoa_B Mucosa-associated lymphoid tissue lymphoma transl protein 1; paracaspase, lymphoma, NF-KB signalling, caspase fold, immun fold, hydrolase-hydrolase inhibitor complex; 1.75A {Homo sapiens} PDB: 3uo8_B 3v55_A 3v4l_A* 3v4o_A* Length = 390 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query370
4f6o_A350 Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 100.0
4af8_A367 Metacaspase MCA2; hydrolase, cysteine peptidase, c 100.0
3bij_A285 Uncharacterized protein GSU0716; alpha-beta protei 100.0
3uoa_B 390 Mucosa-associated lymphoid tissue lymphoma transl 99.96
2j32_A250 Caspase-3; Pro-caspase3, thiol protease, hydrolase 99.75
3e4c_A302 Caspase-1; zymogen, inflammasome, ICE, IL-1B, inna 99.74
1m72_A272 Caspase-1; caspase, cysteine protease, hydrolase-h 99.74
1f1j_A305 Caspase-7 protease; caspase-7, cysteine protease, 99.73
4ehd_A277 Caspase-3; caspase, apoptosis, allosteric inhibiti 99.72
2nn3_C310 Caspase-1; cysteine protease, hydrolase; 3.00A {Sp 99.71
1nw9_B277 Caspase 9, apoptosis-related cysteine protease; XI 99.71
3sir_A259 Caspase; hydrolase; 2.68A {Drosophila melanogaster 99.7
3od5_A278 Caspase-6; caspase domain, apoptotic protease, hyd 99.68
3h11_B271 Caspase-8; cell death, apoptosis, caspase, alterna 99.66
2fp3_A316 Caspase NC; apoptosis, initiator caspase activatio 99.65
2h54_A178 Caspase-1; allosteric site, dimer interface, hydro 99.45
3h11_A272 CAsp8 and FADD-like apoptosis regulator; cell deat 99.09
1pyo_A167 Caspase-2; apoptosis, caspase, alpha-beta, thiol p 98.79
2dko_A146 Caspase-3; low barrier hydrogen bond, caspase, dru 98.66
1qtn_A164 Caspase-8; apoptosis, dithiane-DIOL, caspase, cyst 98.56
2ql9_A173 Caspase-7; cysteine protease, apoptosis, thiol pro 98.42
3p45_A179 Caspase-6; protease, huntington'S disease, physio 98.36
1sc3_B88 Interleukin-1 beta convertase; malonate-bound casp 93.06
2ql9_B97 Caspase-7; cysteine protease, apoptosis, thiol pro 92.6
2dko_B103 Caspase-3; low barrier hydrogen bond, caspase, dru 92.54
2xzd_B118 Caspase-3; hydrolase-protein binding complex, de n 91.98
1gh9_A71 8.3 kDa protein (gene MTH1184); beta+alpha complex 91.75
1pyo_B105 Caspase-2; apoptosis, caspase, alpha-beta, thiol p 91.54
1qtn_B95 Caspase-8; apoptosis, dithiane-DIOL, caspase, cyst 90.34
3rjm_B117 Caspase-2; caspase-2, caspase, hydrolase-hydrolase 85.68
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=7.6e-68  Score=518.41  Aligned_cols=264  Identities=41%  Similarity=0.757  Sum_probs=210.2

Q ss_pred             CCCCCcCCceEEEEEEecCCCCCCCCcchHHHHHHHHHHHHhccCCCCCceEEeccCCCCCCCCchHHHHHHHHHHHHHh
Q 017524           73 GQPPHAQGRKRALIVGVSYRHTNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQG  152 (370)
Q Consensus        73 ~~~~~~~~~k~ALlIGInY~~~~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~  152 (370)
                      -+++.+++||+||||||||++...+|+||+|||++|+++|++++||+.++|++|+|++.++...||++||+++|+||+++
T Consensus        45 ~~~s~~~grr~ALlIGIn~Y~~~~~L~g~vnDA~~m~~~L~~~~Gf~~~~I~lLtd~~~~~~~~pTr~nI~~aL~~L~~~  124 (350)
T 4f6o_A           45 YQYSQCTGRRKALIIGINYIGSKNQLRGCINDAHNIFNFLTNGYGYSSDDIVILTDDQNDLVRVPTRANMIRAMQWLVKD  124 (350)
T ss_dssp             BCCCCCCSCEEEEEEECCCTTSTTCCSSHHHHHHHHHHHHHHHSCCCGGGEEEEETTSSCGGGSCCHHHHHHHHHHHHTT
T ss_pred             cccCCCCCCEEEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCccceeeecccccccccCCCHHHHHHHHHHHHHh
Confidence            35788999999999999988888999999999999999999889999999999999887777789999999999999999


Q ss_pred             CCCCCEEEEEEeccccccCCCCCCCCCCcceeEEcccCCCCCcccHHHHHHhhcCcCCCCCeEEEEEcCCCCCCCCCccc
Q 017524          153 CQPGDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLVRPLPRGARLHAIIDACHSGTVLDLPF  232 (370)
Q Consensus       153 a~~gD~l~fyfSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~ddeL~~~Lv~~l~~g~~l~~IlD~ChSG~~~~~p~  232 (370)
                      +++||+|||||||||.+.++.+|||.||+||+|||+|++..|.|+|+||+++|+++++++++|++||||||||+++|+||
T Consensus       125 a~pgD~llfYFSGHG~q~~d~~gdE~dG~De~lvP~D~~~~g~I~ddeL~~~L~~~l~~g~~vt~IlD~ChSGt~ldlp~  204 (350)
T 4f6o_A          125 AQPNDSLFLHYSGHGGQTEDLDGDEEDGMDDVIYPVDFETQGPIIDDEMHDIMVKPLQQGVRLTALFDSCHSGTVLDLPY  204 (350)
T ss_dssp             CCTTCEEEEEEESCEEEC-----------CEEECCTTHHHHCCEEHHHHHHHHTTTCCTTCEEEEEECSSSCTTTTCCSE
T ss_pred             CCCCCEEEEEEcCCceeccCCCCCcccCCceEEEeccCCcCCcccHHHHHHHHHhhcCCCCeEEEEEccCCCCccccccc
Confidence            99999999999999999999999999999999999999888899999999999999999999999999999999999999


Q ss_pred             cccccccccc----ccccCCC--------------------CCCCc------------------cccCCCCEEEEEecCC
Q 017524          233 LCRMDRQGKY----IWEDHRP--------------------RSGMW------------------KGTSGGEAISFSGCDD  270 (370)
Q Consensus       233 ~~~~~r~g~~----~~~d~~~--------------------~~~~~------------------~~~~~~~~i~~Sac~~  270 (370)
                      .|+.  .|.+    .|++...                    ..+++                  .+++++++|+||||+|
T Consensus       205 ~~~~--~g~~~e~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SgCkD  282 (350)
T 4f6o_A          205 TYST--KGIIKEPNIWKDVGQDGLQAAISYATGNRAALIGSLGSIFKTVKGGMGNNVDRERVRQIKFSAADVVMLSGSKD  282 (350)
T ss_dssp             EEET--TEEEECCCC---------------------------------------------------CCCSEEEEEEEEC-
T ss_pred             cccc--ccccCcchhhhhccccccchhhhhccccchhhcccchhhhhhhccccccccchhhhhhccCCCCCEEEEEecCC
Confidence            8863  3321    2332110                    00011                  1466889999999999


Q ss_pred             CCccccccccCCCCCCChhHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhhhhcCCCCCCCCC
Q 017524          271 NQTSADTSALSKITSTGAMTYSFIQAIERGHGATYGSMLNSMRSTIRNTDSGSELSGAGGLVTSLVTMLLTGGSLSGGFR  350 (370)
Q Consensus       271 ~Q~A~d~~~~~~~~~~G~fT~ali~aL~~~~~~Ty~~Ll~~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (370)
                      +|+|+|+.+.+  ..+|+|||+||++|+.++.+||.+||+.||+.|+.+                             |+
T Consensus       283 ~QtSaD~~~~g--~~~GAmTyafi~aL~~~p~~tY~~Ll~~~r~~L~~k-----------------------------ys  331 (350)
T 4f6o_A          283 NQTSADAVEDG--QNTGAMSHAFIKVMTLQPQQSYLSLLQNMRKELAGK-----------------------------YS  331 (350)
T ss_dssp             --------------CCCHHHHHHHHHHHHCCCCBHHHHHHHHHHHHTTT-----------------------------CS
T ss_pred             CCchhhhccCC--ceeehhHHHHHHHHHHCCCCCHHHHHHHHHHHHHhc-----------------------------CC
Confidence            99999999876  479999999999999999999999999999999854                             57


Q ss_pred             CccccccCCccCCCCCCccC
Q 017524          351 QEPQLTANEPFDVYTKPFSL  370 (370)
Q Consensus       351 Q~Pqlsss~~~d~~~~~f~l  370 (370)
                      |+||||+|++||++ .+|++
T Consensus       332 Q~PQLs~s~~~d~~-~~f~~  350 (350)
T 4f6o_A          332 QKPQLSSSHPIDVN-LQFIM  350 (350)
T ss_dssp             CEEEEEESSCCCTT-SBCCC
T ss_pred             CCceecccCCCCCC-ccccC
Confidence            99999999999995 68975
>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A 4afr_A Back     alignment and structure
>3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca} Back     alignment and structure
>3uoa_B Mucosa-associated lymphoid tissue lymphoma transl protein 1; paracaspase, lymphoma, NF-KB signalling, caspase fold, immun fold, hydrolase-hydrolase inhibitor complex; 1.75A {Homo sapiens} PDB: 3uo8_B 3v55_A 3v4l_A* 3v4o_A* Back     alignment and structure
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A Back     alignment and structure
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens} Back     alignment and structure
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B Back     alignment and structure
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A* Back     alignment and structure
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A Back     alignment and structure
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda} Back     alignment and structure
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A Back     alignment and structure
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A Back     alignment and structure
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B* Back     alignment and structure
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B* Back     alignment and structure
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster} Back     alignment and structure
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ... Back     alignment and structure
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A Back     alignment and structure
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A Back     alignment and structure
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ... Back     alignment and structure
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A* Back     alignment and structure
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A Back     alignment and structure
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens} Back     alignment and structure
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ... Back     alignment and structure
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B Back     alignment and structure
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ... Back     alignment and structure
>2xzd_B Caspase-3; hydrolase-protein binding complex, de novo protein, apoptosi ankyrin repeat protein, ribosome display; 2.10A {Homo sapiens} PDB: 2xzt_B 2y0b_B Back     alignment and structure
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1 Back     alignment and structure
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B Back     alignment and structure
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B* Back     alignment and structure
>3rjm_B Caspase-2; caspase-2, caspase, hydrolase-hydrolase inhibitor; HET: 3PX; 2.55A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 370
g1sc3.1261 c.17.1.1 (A:,B:) Interleukin-1beta converting enzy 2e-04

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query370
d1nw9b_277 Caspase-9 {Human (Homo sapiens) [TaxId: 9606]} 99.91
g1sc3.1261 Interleukin-1beta converting enzyme (a cysteine pr 99.88
g1qtn.1242 Caspase-8 {Human (Homo sapiens) [TaxId: 9606]} 99.83
d1m72a_256 Caspase-1 {Fall armyworm (Spodoptera frugiperda) [ 99.8
g1pyo.1257 Caspase-2 {Human (Homo sapiens) [TaxId: 9606]} 99.79
g1nme.1238 Apopain (caspase-3, cpp32) {Human (Homo sapiens) [ 99.77
d1f1ja_245 Caspase-7 {Human (Homo sapiens) [TaxId: 9606]} 99.71
d1pd0a585 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 80.26
>d1nw9b_ c.17.1.1 (B:) Caspase-9 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Caspase-like
superfamily: Caspase-like
family: Caspase catalytic domain
domain: Caspase-9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.8e-23  Score=192.76  Aligned_cols=235  Identities=13%  Similarity=0.062  Sum_probs=150.0

Q ss_pred             CCceEEEEEEec-CCCC--CCCCcchHHHHHHHHHHHHhccCCCCCceEEeccCCCCCCCCchHHHHHHHHHHHHH-hCC
Q 017524           79 QGRKRALIVGVS-YRHT--NHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQ-GCQ  154 (370)
Q Consensus        79 ~~~k~ALlIGIn-Y~~~--~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~-~a~  154 (370)
                      .+|-+|||||++ |...  ..+..|+.+||+.|+++|+ .+||.   |.++.|        +|+++|++++.++.+ ..+
T Consensus        19 ~prG~aLII~n~~f~~~~~l~~r~Ga~~Da~~l~~~l~-~lGF~---V~~~~n--------lt~~~~~~~l~~~~~~~~~   86 (277)
T d1nw9b_          19 EPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFS-SLHFM---VEVKGD--------LTAKKMVLALLELARQDHG   86 (277)
T ss_dssp             SSCEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHH-HTTEE---EEEEES--------CCHHHHHHHHHHHHHSCCT
T ss_pred             CcccEEEEEeCccCCCccCCCCCCCcHHHHHHHHHHHH-HCCCE---EEEeeC--------CCHHHHHHHHHHhhhhccc
Confidence            456799999998 6542  2456799999999999996 58995   778877        699999999987765 568


Q ss_pred             CCCEEEEEEeccccccCCCCCCCCCCcceeEEcccCCCCCcccHHHHHHhhc-CcC--CCCCeEEEEEcCCCCCCCCCcc
Q 017524          155 PGDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLV-RPL--PRGARLHAIIDACHSGTVLDLP  231 (370)
Q Consensus       155 ~gD~l~fyfSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~ddeL~~~Lv-~~l--~~g~~l~~IlD~ChSG~~~~~p  231 (370)
                      ++|.+||||+|||.+.....         ++.|.|......+.-+++...+. ..+  -++...++||||||++......
T Consensus        87 ~~d~~v~~~~gHG~~~~~~~---------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~kpki~~idaCr~~~~~~~~  157 (277)
T d1nw9b_          87 ALDCCVVVILSHGCQASHLQ---------FPGAVYGTDGCPVSVEKIVNIFNGTSCPSLGGKPKLFFIQACGGEQKDHGF  157 (277)
T ss_dssp             TCSEEEEEEEEEEECCCCSS---------SCCEEECTTSCEEEHHHHHHTTCTTTCGGGTTSCEEEEEEEEC--------
T ss_pred             CCCEEEEEEeCCCccccccc---------ccCcccCCccccccHHHHHHHhHHhhhhhcccCcEEEEEecccCCcccccc
Confidence            99999999999999865321         33333322222233334443331 111  1244568999999998765432


Q ss_pred             cccccc---------ccccc-ccccC-C---CCCCCccccCCCCEEEEEecCCCCccccccccCCCCCCChhHHHHHHHH
Q 017524          232 FLCRMD---------RQGKY-IWEDH-R---PRSGMWKGTSGGEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAI  297 (370)
Q Consensus       232 ~~~~~~---------r~g~~-~~~d~-~---~~~~~~~~~~~~~~i~~Sac~~~Q~A~d~~~~~~~~~~G~fT~ali~aL  297 (370)
                      ......         ..... .+... +   ............+.++..|+.++++|++..     ..+|+||++|++.|
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~~i~~st~~g~~a~~~~-----~~gS~f~~~L~~~l  232 (277)
T d1nw9b_         158 EVASTSPEDESPGSNPEPDATPFQEGLRTFDQLDAISSLPTPSDIFVSYSTFPGFVSWRDP-----KSGSWYVETLDDIF  232 (277)
T ss_dssp             -------------------CBCCC------------CCCCCSCSEEEEEECCCCBSSTTCT-----TSCBHHHHHHHHHH
T ss_pred             cccccCcccccccccccccccchhcccccccccccccccCCcccceEEEecccceEEecCC-----CCCCHHHHHHHHHH
Confidence            111000         00000 00000 0   000001112346788888999999998764     36899999999999


Q ss_pred             hc-CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhhhhcCCCCCCCCCCccccccCCccCCCCC
Q 017524          298 ER-GHGATYGSMLNSMRSTIRNTDSGSELSGAGGLVTSLVTMLLTGGSLSGGFRQEPQLTANEPFDVYTK  366 (370)
Q Consensus       298 ~~-~~~~Ty~~Ll~~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~Pqlsss~~~d~~~~  366 (370)
                      ++ .+..++.+++..|++.|.++.                           +..|.||..++..=.+|.+
T Consensus       233 ~~~~~~~~l~~il~~V~~~V~~~~---------------------------~~kQ~P~~~s~L~k~lyF~  275 (277)
T d1nw9b_         233 EQWAHSEDLQSLLLRVANAVSVKG---------------------------IYKQMPGCFNFLRKKLFFK  275 (277)
T ss_dssp             HHHTTTSCHHHHHHHHHHHHHTTC---------------------------CSCCCCCCEECCSSBCCCC
T ss_pred             HHhCCCCCHHHHHHHHHHHHHHhc---------------------------CCceeeEEeeecceeEEec
Confidence            97 446899999999999998764                           2479999988877666643
>d1m72a_ c.17.1.1 (A:) Caspase-1 {Fall armyworm (Spodoptera frugiperda) [TaxId: 7108]} Back     information, alignment and structure
>d1f1ja_ c.17.1.1 (A:) Caspase-7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure