Citrus Sinensis ID: 017536

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
Protein Sequence
MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNYEYLV
Secondary Structure (PSIPRED)
cccccccEEEEEccccEEEEEEEHHHHHHHHHHccccccccccccccccccEEEcccccHHHHHHHHHHccccEEEEEEccEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHccccccEEEccccccEEEEcccccHHHHHHHHHHccccEEEEEEccEEEEEEEcHHHHHHHHHccccccccccccccccccEEEcccccHHHHHHHHHHccccEEEEEcccccEEEEEEcHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEccccccHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccHccccEEEEEcccccEEEEEcHHHHHHHHHHcccccccccHHHHccccccEcccccHHHHHHHHHHHccccccEEEccccEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHcccccccEEEccccHHHHHHHHHHHccccEEEEEEccEEEEEEccHHHHHHHHHcccccccccEEEEccccccccccccHHHHHHHHHHccccccccEEcccccEEEEEHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEccccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MAARRVDALLLTDSNALLCGILTDKDIATRVIARELnleetpvskvmtrnptfvlsDTLAVEALQKMVQGkfrhlpvvengevIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEkhwgtsisgpnTFIETLRERmfrpslstiipekskvvtisptDTVLMATKKMLELRLSSAvvtvenkprgiltsKDILMRVISqnlpadstlvekvmtpnpecatidtpivDALHimhdgkflhlpvvdrdgdvvdVVDVIHITHAAVATvgntagsnnEAASTMMQKFWDSamalspnddeednrsegslkfasegadtarylsypspspgvpsafafkvqdnkglmhrftcgmlpfpnfievtnyeylv
Flexible Loop (DISEMBL)
MAARRVDALLLTDSNALLCGILTDKDIATRVIARelnleetpvskvmtrnpTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEgvekhwgtsisgpnTFIETLRERMFRPslstiipekskvvtisptDTVLMATKKMLELRLssavvtvenkprgiltskdiLMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAavatvgntagSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNYEYLV
Low Complexity Region (SEG)
MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERaaekgkaiaaavegvekHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPvvdrdgdvvdvvdvIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNYEYLV
Disordered region (IsUnstruct)
*****VDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNT*************************************************************************************************
Disordered Region (DISOPRED)
***RRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAE***************WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA**********************FWD********************************************AFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNYEYLV
Disordered Region (DISEMBL)
MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMAL*************SLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNYEYLV
Disordered Region (DISPRO)
****RVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTA*S**EAASTMM**FW******************************************VPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNYEYLV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNYEYLV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	369	2.2.26 [Sep-21-2011]
P0DH79	548	CBS domain-containing pro	yes	no	0.929	0.625	0.752	1e-152
Q0WLC7	548	CBS domain-containing pro	yes	no	0.929	0.625	0.752	1e-152
Q9FMV3	543	CBS domain-containing pro	no	no	0.924	0.627	0.750	1e-136
Q9LF97	556	CBS domain-containing pro	no	no	0.940	0.624	0.647	1e-130
Q9SJQ5	536	CBS domain-containing pro	no	no	0.948	0.652	0.628	1e-125
O13965	730	Meiotically up-regulated	yes	no	0.715	0.361	0.294	2e-32
P32987	164	Uncharacterized 17.7 kDa	N/A	no	0.298	0.670	0.359	5e-08
P50100	196	Uncharacterized protein M	no	no	0.322	0.607	0.292	1e-07
Q58069	194	Uncharacterized protein M	yes	no	0.249	0.474	0.343	6e-06
Q9LEV3	206	CBS domain-containing pro	no	no	0.284	0.509	0.288	6e-05

>sp|P0DH79|Y5064_ARATH CBS domain-containing protein CBSCBSPB5 OS=Arabidopsis thaliana GN=CBSCBSPB5 PE=2 SV=1

 Score =  539 bits (1389), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 265/352 (75%), Positives = 305/352 (86%), Gaps = 9/352 (2%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAARRVDALLLTDSNALLCGILTD+DIAT+VIA++LNLEETPVSKVMT+NP FVLSDT+A
Sbjct: 87  MAARRVDALLLTDSNALLCGILTDRDIATKVIAKQLNLEETPVSKVMTKNPVFVLSDTIA 146

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120
           VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMER+ EKGKAIAAAVEGVEK+
Sbjct: 147 VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERSVEKGKAIAAAVEGVEKN 206

Query: 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180
           WGTSI+GPNTF+ETLRER+F+PSLSTIIPE +KV+ +   +TVL  T KM+E + S+A+V
Sbjct: 207 WGTSIAGPNTFMETLRERIFKPSLSTIIPENTKVLKVGLDETVLGVTMKMVEYQSSAAMV 266

Query: 181 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
            VENK  GILTSKDILMRVISQNLP ++T VEKVMTPNPE AT+D  IV+ALHIMH+GKF
Sbjct: 267 MVENKLVGILTSKDILMRVISQNLPQETTTVEKVMTPNPESATVDMAIVEALHIMHNGKF 326

Query: 241 LHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDE 300
           LHLPV+D+DGDVV V+DVIHITHAAV T G+TAG NNE A++MMQKFWDSAMALSPN+D 
Sbjct: 327 LHLPVLDKDGDVVAVIDVIHITHAAVTTAGSTAGINNETANSMMQKFWDSAMALSPNEDG 386

Query: 301 EDNRS-EGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTC 351
           ++ RS E S+K +SE  +  +  SY       P+ FAFK+QD KG MHRF C
Sbjct: 387 DETRSEEESMKLSSE-IEVTKSFSY-------PNTFAFKLQDKKGRMHRFMC 430

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WLC7|Y5053_ARATH CBS domain-containing protein CBSCBSPB4 OS=Arabidopsis thaliana GN=CBSCBSPB4 PE=2 SV=2

 Score =  539 bits (1389), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 265/352 (75%), Positives = 305/352 (86%), Gaps = 9/352 (2%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAARRVDALLLTDSNALLCGILTD+DIAT+VIA++LNLEETPVSKVMT+NP FVLSDT+A
Sbjct: 87  MAARRVDALLLTDSNALLCGILTDRDIATKVIAKQLNLEETPVSKVMTKNPVFVLSDTIA 146

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120
           VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMER+ EKGKAIAAAVEGVEK+
Sbjct: 147 VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERSVEKGKAIAAAVEGVEKN 206

Query: 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180
           WGTSI+GPNTF+ETLRER+F+PSLSTIIPE +KV+ +   +TVL  T KM+E + S+A+V
Sbjct: 207 WGTSIAGPNTFMETLRERIFKPSLSTIIPENTKVLKVGLDETVLGVTMKMVEYQSSAAMV 266

Query: 181 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
            VENK  GILTSKDILMRVISQNLP ++T VEKVMTPNPE AT+D  IV+ALHIMH+GKF
Sbjct: 267 MVENKLVGILTSKDILMRVISQNLPQETTTVEKVMTPNPESATVDMAIVEALHIMHNGKF 326

Query: 241 LHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDE 300
           LHLPV+D+DGDVV V+DVIHITHAAV T G+TAG NNE A++MMQKFWDSAMALSPN+D 
Sbjct: 327 LHLPVLDKDGDVVAVIDVIHITHAAVTTAGSTAGINNETANSMMQKFWDSAMALSPNEDG 386

Query: 301 EDNRS-EGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTC 351
           ++ RS E S+K +SE  +  +  SY       P+ FAFK+QD KG MHRF C
Sbjct: 387 DETRSEEESMKLSSE-IEVTKSFSY-------PNTFAFKLQDKKGRMHRFMC 430

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMV3|Y5349_ARATH CBS domain-containing protein CBSCBSPB1 OS=Arabidopsis thaliana GN=CBSCBSPB1 PE=1 SV=1

 Score =  486 bits (1251), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 262/349 (75%), Positives = 300/349 (85%), Gaps = 8/349 (2%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MA+RRVDALLLTDSN +LCGILTDKDIATRVI++ELN+EETPVSKVMT+NP FVLS+TLA
Sbjct: 79  MASRRVDALLLTDSNEMLCGILTDKDIATRVISQELNVEETPVSKVMTKNPMFVLSETLA 138

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120
           VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK 
Sbjct: 139 VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKS 198

Query: 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180
           WGT+ S PNTFIETLR+RMFRPSLSTIIP+ +KV+ +SPTDTVL   KKM+E + S AVV
Sbjct: 199 WGTNTSVPNTFIETLRDRMFRPSLSTIIPDDTKVLKVSPTDTVLTVAKKMVEFQSSCAVV 258

Query: 181 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
            +E+K RGI TSKDILMRV+++NLP   TLVE VMT NPE   +DTPIV+ALHIMH+GKF
Sbjct: 259 IIEDKLRGIFTSKDILMRVVAENLPPSETLVETVMTQNPESTIVDTPIVEALHIMHEGKF 318

Query: 241 LHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDE 300
           LHLPV D++GDVV VVDVIH+THAAVAT G TAG  NEA +TMMQKFWDSAMALSPN+D+
Sbjct: 319 LHLPVTDKEGDVVAVVDVIHVTHAAVATAGTTAGIGNEATNTMMQKFWDSAMALSPNEDD 378

Query: 301 EDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRF 349
           ED+RSE S+K ASE A+T +  S+P       + F+FK++D K   HRF
Sbjct: 379 EDSRSESSMKVASE-AETGK--SFP-----FANTFSFKIEDKKHRKHRF 419

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LF97|Y3295_ARATH CBS domain-containing protein CBSCBSPB3 OS=Arabidopsis thaliana GN=CBSCBSPB3 PE=1 SV=1

 Score =  463 bits (1192), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 228/352 (64%), Positives = 282/352 (80%), Gaps = 5/352 (1%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAARRVDA LLTDS+ALL GI+TDKD+ATRVIA  L  ++T VSKVMTRNP FV SD+LA
Sbjct: 88  MAARRVDACLLTDSSALLSGIVTDKDVATRVIAEGLRPDQTLVSKVMTRNPIFVTSDSLA 147

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120
           +EALQKMVQGKFRHLPVVENGEVIALLDI KCLYDAI+RME+AAE+G A+AAAVEGVEK 
Sbjct: 148 LEALQKMVQGKFRHLPVVENGEVIALLDITKCLYDAISRMEKAAEQGSALAAAVEGVEKQ 207

Query: 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180
           WG+  S P  FIETLRERMF+P+LSTII + SKV  ++P+D V +A K+M +LR++S ++
Sbjct: 208 WGSGYSAPYAFIETLRERMFKPALSTIITDNSKVALVAPSDPVSVAAKRMRDLRVNSVII 267

Query: 181 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
           +  NK  GILTSKDILMRV++QNL  + TLVEKVMTPNPECA+++T I+DALH MHDGKF
Sbjct: 268 STGNKISGILTSKDILMRVVAQNLSPELTLVEKVMTPNPECASLETTILDALHTMHDGKF 327

Query: 241 LHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDE 300
           LHLP++D+DG     VDV+ ITHAA++ V N++G+ N+ A+TMMQKFWDSA+AL P DD 
Sbjct: 328 LHLPIIDKDGSAAACVDVLQITHAAISMVENSSGAVNDMANTMMQKFWDSALALEPPDD- 386

Query: 301 EDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCG 352
            D +SE S       +D  +  SY  PS G+ ++F+FK +D KG +HRFT G
Sbjct: 387 SDTQSEMSAMM--HHSDIGKLSSY--PSLGLGNSFSFKFEDLKGRVHRFTSG 434

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJQ5|Y2650_ARATH CBS domain-containing protein CBSCBSPB2 OS=Arabidopsis thaliana GN=CBSCBSPB2 PE=2 SV=1

 Score =  447 bits (1151), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 228/363 (62%), Positives = 279/363 (76%), Gaps = 13/363 (3%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAARRVDA+LLTDS+ALL GI+TDKDIATRVIA  L  E T VSKVMTRNP FV SD+LA
Sbjct: 86  MAARRVDAVLLTDSSALLSGIVTDKDIATRVIAEGLRPEHTLVSKVMTRNPIFVTSDSLA 145

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120
           +EALQKMVQGKFRHLPVVENGEVIALLDI KCLYDAI+RME+AAE+G A+A AVE  E+H
Sbjct: 146 IEALQKMVQGKFRHLPVVENGEVIALLDITKCLYDAISRMEKAAEQGSALATAVE--ERH 203

Query: 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180
           WG   SG   FI+TLRERMF+P+LSTI+ E +KV  +S +D V +A+KKM +LR++S ++
Sbjct: 204 WG---SGNFAFIDTLRERMFKPALSTIVTENTKVALVSASDPVFVASKKMRDLRVNSVII 260

Query: 181 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
            V NK  GILTSKDILMRV++QNL  + TLVEKVMTPNPECA+I+T I+DALHIMHDGKF
Sbjct: 261 AVGNKIHGILTSKDILMRVVAQNLSPELTLVEKVMTPNPECASIETTILDALHIMHDGKF 320

Query: 241 LHLPVVDRDGDVVDVVDVIHITHAAVATV-GNTAGSNNEAASTMMQKFWDSAMALSPNDD 299
           LHLPV D+DG  V  +DV+ ITHAA++TV  N++G+ N+ A+TMMQKFWDSA+AL P +D
Sbjct: 321 LHLPVFDKDGFAVACLDVLQITHAAISTVENNSSGAVNDMANTMMQKFWDSALALEPPED 380

Query: 300 EEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNF 359
            E +    ++   SEG  +        PS G+ S+FAFK +D KG + RF      F   
Sbjct: 381 YETHSDMSAMLINSEGKQSC-------PSQGLVSSFAFKFEDRKGRVQRFNSTGESFEEL 433

Query: 360 IEV 362
           + V
Sbjct: 434 MSV 436

Arabidopsis thaliana (taxid: 3702)

>sp|O13965|MUG70_SCHPO Meiotically up-regulated gene 70 protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mug70 PE=1 SV=1

 Score =  140 bits (353), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 154/289 (53%), Gaps = 25/289 (8%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAA+R + +L+ D +  L GI+T  DIATR +   LN  +T ++ +M+ +P  + SDT  
Sbjct: 89  MAAKRQNCVLVVDDDEQLAGIVTATDIATRCVGAGLNARQTLIADIMSTSPLCITSDTRF 148

Query: 61  VEALQKMVQGKFRHLPVV----------ENGEVIALLDIAKCLYDAIARMERAAEKGKAI 110
            +AL  M++ KFRHLPVV          + G+VI ++++  CL + + R+ R  E  + +
Sbjct: 149 DDALLLMIEHKFRHLPVVSDGGPDGSAGDEGDVIGIINMRACLREPLNRIARQQEAAQKL 208

Query: 111 AAAVEGVEKHW----------GTSISGPNT-----FIETLRERMFRPSLSTIIPEKSKVV 155
             A+EG ++             +S+SG +      ++E+L+++     + ++I    +  
Sbjct: 209 VEALEGAQEEIENKSVSGNTNSSSVSGNHAAEFLEYVESLKKKASGLEIMSLIDSSEEPF 268

Query: 156 TISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVM 215
            +    TV  AT+ M    +S+ +V       G+ T+ D+++RV++  L    + V +VM
Sbjct: 269 LVGTRTTVAEATESMARSGVSAVLVMDNGAVSGVFTAHDVVLRVLAAGLDPYRSSVIRVM 328

Query: 216 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264
           TP+P+CA     +  AL  M +GKF +LPVVD    ++ ++ + H+  A
Sbjct: 329 TPHPDCALASLRVSTALERMIEGKFSNLPVVDESDAIIGMLSLFHLATA 377

Has a role in meiosis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P32987|YBP3_ACIAM Uncharacterized 17.7 kDa protein in bps2 3'region OS=Acidianus ambivalens PE=4 SV=1

 Score = 59.3 bits (142), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 4/114 (3%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVT-VENKPRGILTSKDILMRVISQNLPADSTL 210
           +KV  + P  T+  A K+M E  L S VV   +N+  GI+T +DI+    + N   DS  
Sbjct: 11  TKVYVVKPNVTIAEAAKEMKEHNLGSLVVIDSQNRVVGIITERDIVKA--ASNRDIDSP- 67

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264
           VEK MT + +  T DT + DAL IM +  F HLP++  +G +  +V +  +  A
Sbjct: 68  VEKYMTKDVKGVTEDTEVTDALDIMLNNGFRHLPIIKSNGKLYGIVSIRDLARA 121

Acidianus ambivalens (taxid: 2283)

>sp|P50100|Y525_METKA Uncharacterized protein MK0525 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=MK0525 PE=4 SV=2

 Score = 58.2 bits (139), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 67/123 (54%), Gaps = 4/123 (3%)

Query: 151 KSKVVTISPTDTVLMATKKMLELRLSSAVVTVE-NKPRGILTSKDILMRVISQNLPADST 209
           +  V+T SPT+T +    KM E  + S V+  E ++P GI+T +D++++V+SQ    D  
Sbjct: 11  RRDVITGSPTETAVEIAYKMREHGIGSVVIVNEKDEPIGIITERDLVIKVVSQGKNPDEV 70

Query: 210 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIHITHAAV 266
           +   +M+        D  + +A+ +M D     LP+VD +G ++ +V   D++ +    V
Sbjct: 71  IARDIMSQPVITVEEDMEVNEAVKLMVDKGIRRLPIVDDNGKLIGIVTMQDILQVEPYLV 130

Query: 267 ATV 269
           AT+
Sbjct: 131 ATI 133

Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) (taxid: 190192)

>sp|Q58069|Y653_METJA Uncharacterized protein MJ0653 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0653 PE=4 SV=1

 Score = 52.0 bits (123), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 4/96 (4%)

Query: 170 MLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIV 229
           M E  + + V+   NKP GI+T +DI+ RV+S+NL     L E+VM+        +  I 
Sbjct: 33  MTENNIGAVVIVENNKPIGIVTERDIVKRVVSKNLKPKDVLAEEVMSKKIITIPQNASIT 92

Query: 230 DALHIMHDGKFLHLPVVDRDGDVVDVV---DVIHIT 262
           +A  IM       LPVV +DG++V +V   D++ ++
Sbjct: 93  EAAKIMATHGIKRLPVV-KDGELVGIVTQSDIVRVS 127

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

>sp|Q9LEV3|CBSX3_ARATH CBS domain-containing protein CBSX3, mitochondrial OS=Arabidopsis thaliana GN=CBSX3 PE=1 SV=1

 Score = 48.9 bits (115), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 59/111 (53%), Gaps = 6/111 (5%)

Query: 161 DTVLMATKKMLELRLSSAVVTVENKPR---GILTSKDILMRVISQNLPADSTLVEKVMTP 217
           DTV  A K M +  + + VV    + +   GI+T +D L ++I Q   + ST V  +MT 
Sbjct: 79  DTVYDAVKSMTQHNVGALVVVKPGEQQALAGIITERDYLRKIIVQGRSSKSTKVGDIMTE 138

Query: 218 NPECATI--DTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 266
             +  T+  +T ++ A+ +M D +  H+PV+ +D  ++ +V +  +  A V
Sbjct: 139 ENKLITVTPETKVLRAMQLMTDNRIRHIPVI-KDKGMIGMVSIGDVVRAVV 188

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	369
255540203	545	conserved hypothetical protein [Ricinus	0.970	0.656	0.847	1e-176
118484915	541	unknown [Populus trichocarpa]	0.970	0.661	0.836	1e-175
449440540	540	PREDICTED: CBS domain-containing protein	0.945	0.646	0.851	1e-172
225456355	546	PREDICTED: CBS domain-containing protein	0.967	0.653	0.825	1e-169
359491097	541	PREDICTED: CBS domain-containing protein	0.967	0.659	0.825	1e-169
125528914	497	hypothetical protein OsI_04983 [Oryza sa	0.945	0.702	0.800	1e-165
224122050	535	predicted protein [Populus trichocarpa]	0.967	0.667	0.790	1e-164
357126564	550	PREDICTED: CBS domain-containing protein	0.945	0.634	0.786	1e-163
147863576	569	hypothetical protein VITISV_019408 [Viti	0.962	0.623	0.756	1e-161
356511510	542	PREDICTED: CBS domain-containing protein	0.945	0.643	0.795	1e-161

>gi|255540203|ref|XP_002511166.1| conserved hypothetical protein [Ricinus communis] gi|223550281|gb|EEF51768.1| conserved hypothetical protein [Ricinus communis]

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 305/360 (84%), Positives = 325/360 (90%), Gaps = 2/360 (0%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNP FVLSDTLA
Sbjct: 79  MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPVFVLSDTLA 138

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120
           VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK+
Sbjct: 139 VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKN 198

Query: 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180
           WGT+ SGPNTFIETLRERMFRPSLSTI+PE SKVVT+ PT+TVL  TKKMLE R SSAVV
Sbjct: 199 WGTTFSGPNTFIETLRERMFRPSLSTILPENSKVVTVLPTETVLAVTKKMLESRSSSAVV 258

Query: 181 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
            V+ KPRGILTSKDILMRVI+QNLP+DSTL EKVMTPNPECATIDTPIVDALH MHDGKF
Sbjct: 259 IVDQKPRGILTSKDILMRVIAQNLPSDSTLAEKVMTPNPECATIDTPIVDALHTMHDGKF 318

Query: 241 LHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDE 300
           LHLPV+DRDG+VV VVDVIHITHAAVATVG+TAG NNEAASTMMQKFWDSAMALSPN+D+
Sbjct: 319 LHLPVLDRDGNVVAVVDVIHITHAAVATVGSTAGVNNEAASTMMQKFWDSAMALSPNEDD 378

Query: 301 EDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFI 360
           +D RSEGSLK  SEGA+T R L Y  PS G P++F FK++D KG MHRFT       + I
Sbjct: 379 DDTRSEGSLKLPSEGAETGRSLPY--PSAGFPNSFGFKIEDKKGRMHRFTSDTRSLTDLI 436

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484915|gb|ABK94323.1| unknown [Populus trichocarpa]

 Score =  619 bits (1595), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 301/360 (83%), Positives = 326/360 (90%), Gaps = 2/360 (0%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAARRVDALLLTDSNALLCGILTDKD+A+RVIA E+NLEETPVSKVMTRNP FVLSDTLA
Sbjct: 76  MAARRVDALLLTDSNALLCGILTDKDLASRVIAPEVNLEETPVSKVMTRNPVFVLSDTLA 135

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120
           VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK+
Sbjct: 136 VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKN 195

Query: 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180
           WGTSIS PNTFIETLRERMFRP+LSTIIPE SKVVT+SP++TVL+ TKKMLE R   AVV
Sbjct: 196 WGTSISVPNTFIETLRERMFRPALSTIIPENSKVVTVSPSETVLVVTKKMLESRSGCAVV 255

Query: 181 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
           TV+ KPRGI TSKDILMRVI+QNLP DSTLVEKVMTPNPECATIDTPIVDALH MHDGKF
Sbjct: 256 TVDEKPRGIFTSKDILMRVIAQNLPPDSTLVEKVMTPNPECATIDTPIVDALHTMHDGKF 315

Query: 241 LHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDE 300
           LHLPVVDRDG++V V+DVIHITHAAVATVGNT G+NNE ASTMMQKFWDSAMA+SPNDDE
Sbjct: 316 LHLPVVDRDGNIVAVIDVIHITHAAVATVGNTTGANNETASTMMQKFWDSAMAMSPNDDE 375

Query: 301 EDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFI 360
           ++ RSEGSLK ASEG +TAR L Y  PS G+P+ F+FK++D KG MHRFTC      + I
Sbjct: 376 DETRSEGSLKIASEGTETARSLLY--PSSGLPNNFSFKIEDKKGRMHRFTCETRSLTDLI 433

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440540|ref|XP_004138042.1| PREDICTED: CBS domain-containing protein CBSCBSPB5-like [Cucumis sativus] gi|449520507|ref|XP_004167275.1| PREDICTED: CBS domain-containing protein CBSCBSPB5-like [Cucumis sativus]

 Score =  612 bits (1578), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 299/351 (85%), Positives = 325/351 (92%), Gaps = 2/351 (0%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAARRVDALLLTDSNALLCGILTDKDIATRVIA  +NLEET VSKVMTRNP FVLSDTLA
Sbjct: 76  MAARRVDALLLTDSNALLCGILTDKDIATRVIACGINLEETSVSKVMTRNPVFVLSDTLA 135

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120
           VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK 
Sbjct: 136 VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKS 195

Query: 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180
           WGTS+SGPNTFIETLRERMFRPSLSTIIPE  K+VT+ PT+TVLMATKKMLELR+SSAVV
Sbjct: 196 WGTSVSGPNTFIETLRERMFRPSLSTIIPENLKIVTVPPTETVLMATKKMLELRVSSAVV 255

Query: 181 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
           TV++KP+GILTSKDILMR+I+QNLP DSTLVEKVMTPNPECA+IDTPIVDALH MHDGKF
Sbjct: 256 TVDSKPQGILTSKDILMRLIAQNLPPDSTLVEKVMTPNPECASIDTPIVDALHTMHDGKF 315

Query: 241 LHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDE 300
           LHLPVVDRDG+VV VVDVIHITHAAVATVGNT+G  NEAAS+MMQKFWDSAMALSPNDD+
Sbjct: 316 LHLPVVDRDGNVVAVVDVIHITHAAVATVGNTSGVGNEAASSMMQKFWDSAMALSPNDDD 375

Query: 301 EDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTC 351
           ++ RSEGS+K ASE  DT R L  P PSPG+ + F+FK++D +G MHRF+C
Sbjct: 376 DELRSEGSMKLASEETDTLRTL--PFPSPGMSNTFSFKLEDRRGRMHRFSC 424

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456355|ref|XP_002283958.1| PREDICTED: CBS domain-containing protein CBSCBSPB5-like isoform 1 [Vitis vinifera]

 Score =  600 bits (1548), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 297/360 (82%), Positives = 319/360 (88%), Gaps = 3/360 (0%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNP FVLSDTLA
Sbjct: 81  MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPIFVLSDTLA 140

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120
           VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK+
Sbjct: 141 VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKN 200

Query: 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180
           WGTS+SGP+TFIETLRERMFRP+LSTIIPE SKVVT+SPTDTVL A KKMLEL+LS AVV
Sbjct: 201 WGTSLSGPSTFIETLRERMFRPALSTIIPENSKVVTVSPTDTVLTAAKKMLELKLSCAVV 260

Query: 181 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
            VEN+P+GILTSKDILMRVI+QNL  +ST VEKVMTPNPECATIDTPIVDALH MHDGKF
Sbjct: 261 AVENRPKGILTSKDILMRVIAQNLHPESTPVEKVMTPNPECATIDTPIVDALHTMHDGKF 320

Query: 241 LHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDE 300
           LHLPV+DRDG VV V DVIHITHAAVATVG  AG NNEAAS++MQKFWDSAMAL  +DDE
Sbjct: 321 LHLPVIDRDGGVVAVADVIHITHAAVATVGGNAGVNNEAASSLMQKFWDSAMALGTDDDE 380

Query: 301 EDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFI 360
           E  RSEGSLK ASEG +  R L Y S +  + + FAFK++D +G MHRFTC      + I
Sbjct: 381 E-TRSEGSLKLASEGTEIGRTLPYTSSA--MHNTFAFKIEDKRGRMHRFTCDTRSLTDVI 437

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491097|ref|XP_003634219.1| PREDICTED: CBS domain-containing protein CBSCBSPB5-like isoform 2 [Vitis vinifera] gi|297734436|emb|CBI15683.3| unnamed protein product [Vitis vinifera]

 Score =  600 bits (1546), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 297/360 (82%), Positives = 319/360 (88%), Gaps = 3/360 (0%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNP FVLSDTLA
Sbjct: 76  MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPIFVLSDTLA 135

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120
           VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK+
Sbjct: 136 VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKN 195

Query: 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180
           WGTS+SGP+TFIETLRERMFRP+LSTIIPE SKVVT+SPTDTVL A KKMLEL+LS AVV
Sbjct: 196 WGTSLSGPSTFIETLRERMFRPALSTIIPENSKVVTVSPTDTVLTAAKKMLELKLSCAVV 255

Query: 181 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
            VEN+P+GILTSKDILMRVI+QNL  +ST VEKVMTPNPECATIDTPIVDALH MHDGKF
Sbjct: 256 AVENRPKGILTSKDILMRVIAQNLHPESTPVEKVMTPNPECATIDTPIVDALHTMHDGKF 315

Query: 241 LHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDE 300
           LHLPV+DRDG VV V DVIHITHAAVATVG  AG NNEAAS++MQKFWDSAMAL  +DDE
Sbjct: 316 LHLPVIDRDGGVVAVADVIHITHAAVATVGGNAGVNNEAASSLMQKFWDSAMALGTDDDE 375

Query: 301 EDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFI 360
           E  RSEGSLK ASEG +  R L Y S +  + + FAFK++D +G MHRFTC      + I
Sbjct: 376 E-TRSEGSLKLASEGTEIGRTLPYTSSA--MHNTFAFKIEDKRGRMHRFTCDTRSLTDVI 432

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125528914|gb|EAY77028.1| hypothetical protein OsI_04983 [Oryza sativa Indica Group] gi|125573153|gb|EAZ14668.1| hypothetical protein OsJ_04591 [Oryza sativa Japonica Group]

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 281/351 (80%), Positives = 313/351 (89%), Gaps = 2/351 (0%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAARRVDA+LLTDSNALLCGILTDKDI TRVIAREL LEETPVSKVMTRNP FVLSDTLA
Sbjct: 31  MAARRVDAVLLTDSNALLCGILTDKDITTRVIARELKLEETPVSKVMTRNPLFVLSDTLA 90

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120
           VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH
Sbjct: 91  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 150

Query: 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180
           WG S+SGPNTFIETLRERMFRPSLSTII E SKVVT++PTDTVL A+KKMLE+++SSAVV
Sbjct: 151 WGASVSGPNTFIETLRERMFRPSLSTIISENSKVVTVAPTDTVLTASKKMLEVKVSSAVV 210

Query: 181 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
            +ENKP GILTS+DILMRVI+QNLP +ST VEKVMT  PECAT+DTPI+DALH MHDGKF
Sbjct: 211 AIENKPGGILTSRDILMRVIAQNLPPESTTVEKVMTQTPECATVDTPILDALHTMHDGKF 270

Query: 241 LHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDE 300
           LHLPV+D+DG+VV VVDV+HITHAA+ATVGN+AGS +EA S MMQ+FWDSAM++ P DD+
Sbjct: 271 LHLPVLDKDGNVVTVVDVLHITHAAIATVGNSAGSGSEATSAMMQRFWDSAMSIGPLDDD 330

Query: 301 EDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTC 351
           +D+RSEGS K ASE  D  R   Y  P+ G+ + F FK+QD +G MHRF C
Sbjct: 331 DDSRSEGSTKVASEATDVGRSAFY--PASGLSNTFGFKIQDKQGRMHRFNC 379

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122050|ref|XP_002318739.1| predicted protein [Populus trichocarpa] gi|222859412|gb|EEE96959.1| predicted protein [Populus trichocarpa]

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 290/367 (79%), Positives = 315/367 (85%), Gaps = 10/367 (2%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAARRVDALLLTDSNALLCGILTDKD+A+RVIA E+NLEETPVSKVMTRNP FVLSDTLA
Sbjct: 64  MAARRVDALLLTDSNALLCGILTDKDLASRVIAPEVNLEETPVSKVMTRNPVFVLSDTLA 123

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120
           VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK+
Sbjct: 124 VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKN 183

Query: 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180
           WGTSIS PNTFIETLRERMFRP+LSTIIPE SKVVT+SP++TVL+ TKKMLE R   AVV
Sbjct: 184 WGTSISVPNTFIETLRERMFRPALSTIIPENSKVVTVSPSETVLVVTKKMLESRSGCAVV 243

Query: 181 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
           TV+ KPRGI TSKDILMRVI+QNLP DSTLVEKVMTPNPECATIDTPIVDALH MHDGKF
Sbjct: 244 TVDEKPRGIFTSKDILMRVIAQNLPPDSTLVEKVMTPNPECATIDTPIVDALHTMHDGKF 303

Query: 241 LHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDE 300
           LHLPVVDRDG++V V+DVIHITHAAVATVGN  G+NNE ASTMMQKFWDSAMA+SPNDDE
Sbjct: 304 LHLPVVDRDGNIVAVIDVIHITHAAVATVGNATGANNETASTMMQKFWDSAMAMSPNDDE 363

Query: 301 EDNRSEGSLKF-------ASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGM 353
           ++ R    L         +S G     Y S   PS G+P+ F+FK++D KG MHRFTC  
Sbjct: 364 DETRRLDVLVLILSKILISSTGFT---YTSLLYPSSGLPNNFSFKIEDKKGRMHRFTCET 420

Query: 354 LPFPNFI 360
               + I
Sbjct: 421 RSLTDLI 427

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357126564|ref|XP_003564957.1| PREDICTED: CBS domain-containing protein CBSCBSPB5-like [Brachypodium distachyon]

 Score =  579 bits (1493), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 276/351 (78%), Positives = 311/351 (88%), Gaps = 2/351 (0%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAARRVDA+LLTDSNALLCGILTDKDI TRVIAREL LE+TPVSKVMTRNP FVLSDTLA
Sbjct: 85  MAARRVDAVLLTDSNALLCGILTDKDITTRVIARELKLEDTPVSKVMTRNPLFVLSDTLA 144

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120
           VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH
Sbjct: 145 VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 204

Query: 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180
           WGT++SGPNTF+ETLRERMFRPSLSTII E SKVVT++PTDTVL A+KKMLEL++SSAVV
Sbjct: 205 WGTAVSGPNTFVETLRERMFRPSLSTIISENSKVVTVAPTDTVLTASKKMLELKVSSAVV 264

Query: 181 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
            +ENKP GILTS+DILMRVI+QNLP +ST VEKVMT +PECAT DTPI++ALH MHDGKF
Sbjct: 265 AIENKPGGILTSRDILMRVIAQNLPPESTTVEKVMTQSPECATTDTPILEALHTMHDGKF 324

Query: 241 LHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDE 300
           LHLPV+D DG+VV V+DV+HITHAA+ATVGN+  + +EA S+MMQ+FWDSAM+  P DD+
Sbjct: 325 LHLPVLDSDGNVVTVIDVLHITHAAIATVGNSGAAGSEATSSMMQRFWDSAMSSGPLDDD 384

Query: 301 EDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTC 351
           +D+RSEGS K ASE  D  R   Y  P+ G+ S F FK+QD +G MHRF C
Sbjct: 385 DDSRSEGSTKVASEATDIGRSTFY--PASGLSSTFGFKIQDKQGRMHRFNC 433

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147863576|emb|CAN79772.1| hypothetical protein VITISV_019408 [Vitis vinifera]

 Score =  575 bits (1482), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 295/390 (75%), Positives = 317/390 (81%), Gaps = 35/390 (8%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNP FVLSDTLA
Sbjct: 76  MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPIFVLSDTLA 135

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120
           VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK+
Sbjct: 136 VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKN 195

Query: 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180
           WGTS+SGP+TFIETLRERMFRP+LSTIIPE SKVVT+SPTDTVL A KKMLEL+LS AVV
Sbjct: 196 WGTSLSGPSTFIETLRERMFRPALSTIIPENSKVVTVSPTDTVLTAAKKMLELKLSCAVV 255

Query: 181 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
            VEN+P+GILTSKDILMRVI+QNL  +ST V  VMTPNPECATIDTPIVDALH MHDGKF
Sbjct: 256 AVENRPKGILTSKDILMRVIAQNLHPESTPV--VMTPNPECATIDTPIVDALHTMHDGKF 313

Query: 241 LHLPVVDRDGDVVDVVDVIHITHAAVAT------------------------------VG 270
           LHLPV+DRDG VV V DVIHITHAAVAT                              VG
Sbjct: 314 LHLPVIDRDGGVVAVADVIHITHAAVATVKLCLSKCCSSQQQAAKELSCFQCFIDRMQVG 373

Query: 271 NTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPG 330
             AG NNEAAS++MQKFWDSAMAL  +DDEE  RSEGSLK ASEG +  R L Y S +  
Sbjct: 374 GNAGVNNEAASSLMQKFWDSAMALGTDDDEE-TRSEGSLKLASEGTEIGRTLPYTSSA-- 430

Query: 331 VPSAFAFKVQDNKGLMHRFTCGMLPFPNFI 360
           + + FAFK++D +G MHRFTC      + I
Sbjct: 431 MHNTFAFKIEDKRGRMHRFTCDTRSLTDVI 460

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511510|ref|XP_003524468.1| PREDICTED: CBS domain-containing protein CBSCBSPB5-like [Glycine max]

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 280/352 (79%), Positives = 315/352 (89%), Gaps = 3/352 (0%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAAR+VDALLLTDSNALLCGILTDKDIATRVIARE+NLEETPVSKVMTRNP FVLSDT A
Sbjct: 76  MAARKVDALLLTDSNALLCGILTDKDIATRVIAREVNLEETPVSKVMTRNPVFVLSDTRA 135

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120
           VEALQKMVQG+FRHLPVVENGEV+A+LDIAKCLYDAIARMERAAEKGKAIAAAVEG+EKH
Sbjct: 136 VEALQKMVQGRFRHLPVVENGEVVAILDIAKCLYDAIARMERAAEKGKAIAAAVEGIEKH 195

Query: 121 WGTSISGPN-TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAV 179
           WGTS    N TF+ETLRE++F+PSLSTIIPE SKVVT+SPTD+VL  TKKMLELR SSAV
Sbjct: 196 WGTSTPASNSTFMETLREQIFKPSLSTIIPENSKVVTVSPTDSVLTTTKKMLELRASSAV 255

Query: 180 VTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGK 239
           VT+++KP GILTSKDILMRVI+Q+LP  STLVEKVMTPNPEC TIDTPIVDALH MHDGK
Sbjct: 256 VTIDDKPCGILTSKDILMRVIAQSLPPSSTLVEKVMTPNPECGTIDTPIVDALHTMHDGK 315

Query: 240 FLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDD 299
           FLHLPVV+R G VV  VDVIHITHAAVATVGNT   NNEAA++M+QKFWDSAMAL+PN++
Sbjct: 316 FLHLPVVNRGGIVVATVDVIHITHAAVATVGNTPNFNNEAANSMIQKFWDSAMALAPNEE 375

Query: 300 EEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTC 351
           +ED++SE SLK  SEG +T R +SY + S  + + F+FK+QD KG +HRFTC
Sbjct: 376 DEDSQSEASLKMISEGGETGRSISYLTSS--MQNVFSFKLQDRKGRLHRFTC 425

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	369
TAIR|locus:2167331	543	AT5G63490 "AT5G63490" [Arabido	0.924	0.627	0.673	3.3e-118
ASPGD|ASPL0000033419	666	AN5716 [Emericella nidulans (t	0.807	0.447	0.344	8.6e-39
CGD|CAL0003543	605	orf19.5238 [Candida albicans (	0.913	0.557	0.290	1.1e-31
POMBASE|SPAC24C9.05c	730	mug70 "conserved protein Mug20	0.276	0.139	0.366	4.8e-25
UNIPROTKB|Q48IU0	146	PSPPH_2494 "CBS domain protein	0.260	0.657	0.333	6.1e-09
UNIPROTKB|Q5LRC8	144	SPO2201 "CBS domain protein" [	0.273	0.701	0.295	7.9e-09
TIGR_CMR|SPO_2201	144	SPO_2201 "CBS domain protein"	0.273	0.701	0.295	7.9e-09
UNIPROTKB|Q5LLL6	174	Q5LLL6 "CBS domain protein" [R	0.262	0.557	0.323	1.7e-08
TIGR_CMR|SPO_A0034	174	SPO_A0034 "CBS domain protein"	0.262	0.557	0.323	1.7e-08
UNIPROTKB|Q0BYV1	144	HNE_2660 "CBS domain protein"	0.265	0.680	0.295	1.6e-07

TAIR|locus:2167331 AT5G63490 "AT5G63490" [Arabidopsis thaliana (taxid:3702)]

 Score = 1164 (414.8 bits), Expect = 3.3e-118, P = 3.3e-118
 Identities = 235/349 (67%), Positives = 271/349 (77%)

Query:     1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
             MA+RRVDALLLTDSN +LCGILTDKDIATRVI++ELN+EETPVSKVMT+NP FVLS+TLA
Sbjct:    79 MASRRVDALLLTDSNEMLCGILTDKDIATRVISQELNVEETPVSKVMTKNPMFVLSETLA 138

Query:    61 VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERXXXXXXXXXXXXXXXXXH 120
             VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMER                  
Sbjct:   139 VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKS 198

Query:   121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180
             WGT+ S PNTFIETLR+RMFRPSLSTIIP+ +KV+ +SPTDTVL   KKM+E + S AVV
Sbjct:   199 WGTNTSVPNTFIETLRDRMFRPSLSTIIPDDTKVLKVSPTDTVLTVAKKMVEFQSSCAVV 258

Query:   181 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
              +E+K RGI TSKDILMRV+++NLP   TLVE VMT NPE   +DTPIV+ALHIMH+GKF
Sbjct:   259 IIEDKLRGIFTSKDILMRVVAENLPPSETLVETVMTQNPESTIVDTPIVEALHIMHEGKF 318

Query:   241 LHLPXXXXXXXXXXXXXXIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDE 300
             LHLP              IH+THAAVAT G TAG  NEA +TMMQKFWDSAMALSPN+D+
Sbjct:   319 LHLPVTDKEGDVVAVVDVIHVTHAAVATAGTTAGIGNEATNTMMQKFWDSAMALSPNEDD 378

Query:   301 EDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRF 349
             ED+RSE S+K ASE A+T +  S+P       + F+FK++D K   HRF
Sbjct:   379 EDSRSESSMKVASE-AETGK--SFP-----FANTFSFKIEDKKHRKHRF 419

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

ASPGD|ASPL0000033419 AN5716 [Emericella nidulans (taxid:162425)]

 Score = 419 (152.6 bits), Expect = 8.6e-39, P = 8.6e-39
 Identities = 107/311 (34%), Positives = 163/311 (52%)

Query:     1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
             MAA+R D +L+TD +  + GI T KD+A RV+   L   +  VS++MT+NP    +DT A
Sbjct:   132 MAAKREDCVLVTDDDDRIAGIFTAKDLAFRVVGAGLKARDITVSEIMTKNPLCARTDTSA 191

Query:    61 VEALQKMVQGKFRHLPVV-ENGEVIALLDIAKCLYDAIARMERXXXXXXXXXXXXXXXXX 119
              +AL  MV+  FRHLPV+ EN ++  +LDI KC YDA+ ++ER                 
Sbjct:   192 TDALDLMVRKGFRHLPVMDENQDISGVLDITKCFYDAMEKLERAYSSSRKLYDALEGVQS 251

Query:   120 HWGTSISGPNT-FIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSA 178
               G+S       ++E LR +M  P+L +++ +     T+S   TV  A   M E   ++ 
Sbjct:   252 ELGSSQPQQIIQYVEALRSKMSGPTLESVL-DGMPPTTVSVRTTVKEAAALMKEHHTTAL 310

Query:   179 VVTVENKPRGILTSKDILMRVISQNL-PADSTLVEKVMTPNPECATIDTPIVDALHIMHD 237
             +V  +    GI TSKDI++RVI+  L PA  ++V +VMTP+P+ A  D  I  AL  MHD
Sbjct:   311 LVQDQGSITGIFTSKDIVLRVIAPGLDPATCSVV-RVMTPHPDFAPSDMSIQAALRKMHD 369

Query:   238 GKFLHLPXXXXXXXXXXXXXXIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPN 297
             G +L+LP              + +T+A +  + + +  ++E  +    KFW S       
Sbjct:   370 GHYLNLPVMNEGGEIVGMVDVLKLTYATLEQINSMSTQDDEGPA--WNKFWLSM------ 421

Query:   298 DDEEDNRSEGS 308
             D E D+   GS
Sbjct:   422 DHESDSMVSGS 432

GO:0006139 "nucleobase-containing compound metabolic process" evidence=RCA

GO:0003938 "IMP dehydrogenase activity" evidence=RCA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

CGD|CAL0003543 orf19.5238 [Candida albicans (taxid:5476)]

 Score = 353 (129.3 bits), Expect = 1.1e-31, P = 1.1e-31
 Identities = 105/362 (29%), Positives = 165/362 (45%)

Query:     1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
             M ARR + +L+ +    L GI T KD+A R++   LN  +  +  +MT+NP    +   A
Sbjct:    73 MTARRENCVLVVNEIGELLGIFTAKDVAFRIVGSGLNATQVTIDTIMTKNPICANAADPA 132

Query:    61 VEALQKMVQGKFRHLPVV-ENGEVIALLDIAKCLYDAIARMERXXXXXXXXXXXXXXXXX 119
              +AL  MV+  FRHLPV+ E  +++ +LDI K     + ++ER                 
Sbjct:   133 GDALNLMVERGFRHLPVLDEKSQIVGVLDITKSYAQQMEKLERMHSSSKKLHEALDSVHN 192

Query:   120 HWGTSISGPNTF--IETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSS 177
               G      + F   ETL+ +M  P+L   +   +    ++   +V  AT  M E R ++
Sbjct:   193 EIGVGEQPHHVFQYFETLKNKMNGPTLEDALDANTVPTYVNVKASVHEATMLMKENRTTA 252

Query:   178 AVVTVENKP-RGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMH 236
              +V   N+   GI TSKD+++RVI+  L      V +VMTP P+ A I  P+ DAL  M 
Sbjct:   253 VLVKDTNEQVAGIFTSKDVVLRVIAAGLDPKKCSVVRVMTPQPDVAPIGLPVQDALRKMF 312

Query:   237 DGKFLHLPXXXXXXXXXXXXXXIHITHAAVATV----------GNTA-GSNNEAASTMMQ 285
             DG +L+LP              + +TH  +  +          G+TA  S NE  +    
Sbjct:   313 DGHYLNLPVVANEGDIIGVVEVLKLTHITLNQIKQLETSETSNGSTAVDSTNEGPA--WN 370

Query:   286 KFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGL 345
             KFW S   L   D + ++    SL   S G+ TA     P  +P    +F   ++ +  +
Sbjct:   371 KFWTS---LDNTDGDTESAHSDSLMETSRGSATA-----PDITPSEFHSFNVDIKPSDSV 422

Query:   346 MH 347
              H
Sbjct:   423 SH 424

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

POMBASE|SPAC24C9.05c mug70 "conserved protein Mug20" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 182 (69.1 bits), Expect = 4.8e-25, Sum P(3) = 4.8e-25
 Identities = 41/112 (36%), Positives = 67/112 (59%)

Query:     1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
             MAA+R + +L+ D +  L GI+T  DIATR +   LN  +T ++ +M+ +P  + SDT  
Sbjct:    89 MAAKRQNCVLVVDDDEQLAGIVTATDIATRCVGAGLNARQTLIADIMSTSPLCITSDTRF 148

Query:    61 VEALQKMVQGKFRHLPVV----------ENGEVIALLDIAKCLYDAIARMER 102
              +AL  M++ KFRHLPVV          + G+VI ++++  CL + + R+ R
Sbjct:   149 DDALLLMIEHKFRHLPVVSDGGPDGSAGDEGDVIGIINMRACLREPLNRIAR 200

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

UNIPROTKB|Q48IU0 PSPPH_2494 "CBS domain protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 139 (54.0 bits), Expect = 6.1e-09, P = 6.1e-09
 Identities = 33/99 (33%), Positives = 57/99 (57%)

Query:     1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
             MA + + AL + + N ++ G+++++D A +VI +  +   TPV ++M+ N    +    +
Sbjct:    34 MAEKNIGALPVVEGNVVV-GVVSERDYARKVILKGRSSVGTPVREIMS-NKVITVDSQQS 91

Query:    61 VEALQK-MVQGKFRHLPVVENGEVIALLDIAKCLYDAIA 98
             VEA    M     RHLPVVE+G ++ LL I   + +AIA
Sbjct:    92 VEACMGIMTDSHLRHLPVVEDGRLLGLLSIGDLVKEAIA 130

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5LRC8 SPO2201 "CBS domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 138 (53.6 bits), Expect = 7.9e-09, P = 7.9e-09
 Identities = 31/105 (29%), Positives = 57/105 (54%)

Query:     1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
             +A +R+  ++++D      GIL+++DI   + A        PVS  MT++      D   
Sbjct:    31 LAEKRIGTVVVSDDGETAQGILSERDIVRELAASGSGCLSEPVSTYMTKDLITCGRDAKV 90

Query:    61 VEALQKMVQGKFRHLPVVENGEVIALL---DIAKCLYDAIARMER 102
              + L +M +G+FRH+PV+E G+++ L+   D+ K     +A ME+
Sbjct:    91 QDVLSQMTEGRFRHMPVIEEGKLVGLVTLGDVVKAQLAELA-MEK 134

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_2201 SPO_2201 "CBS domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 138 (53.6 bits), Expect = 7.9e-09, P = 7.9e-09
 Identities = 31/105 (29%), Positives = 57/105 (54%)

Query:     1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
             +A +R+  ++++D      GIL+++DI   + A        PVS  MT++      D   
Sbjct:    31 LAEKRIGTVVVSDDGETAQGILSERDIVRELAASGSGCLSEPVSTYMTKDLITCGRDAKV 90

Query:    61 VEALQKMVQGKFRHLPVVENGEVIALL---DIAKCLYDAIARMER 102
              + L +M +G+FRH+PV+E G+++ L+   D+ K     +A ME+
Sbjct:    91 QDVLSQMTEGRFRHMPVIEEGKLVGLVTLGDVVKAQLAELA-MEK 134

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5LLL6 Q5LLL6 "CBS domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 135 (52.6 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 32/99 (32%), Positives = 55/99 (55%)

Query:     4 RRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRN-PTFVLSDTLAVE 62
             +R+ A+L+TD N  L GIL+++DI  R+              +MTR   T    +TL V 
Sbjct:    65 KRIGAVLVTDQNGALLGILSERDIVRRMADTPGQTLPQQAEGLMTRAVQTCAPDETLNV- 123

Query:    63 ALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARME 101
              L++M +G+FRHLPV+ +G++  ++ I   +   +  +E
Sbjct:   124 VLKRMTEGRFRHLPVMRDGKLCGMITIGDVVNFRLRELE 162

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_A0034 SPO_A0034 "CBS domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 135 (52.6 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 32/99 (32%), Positives = 55/99 (55%)

Query:     4 RRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRN-PTFVLSDTLAVE 62
             +R+ A+L+TD N  L GIL+++DI  R+              +MTR   T    +TL V 
Sbjct:    65 KRIGAVLVTDQNGALLGILSERDIVRRMADTPGQTLPQQAEGLMTRAVQTCAPDETLNV- 123

Query:    63 ALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARME 101
              L++M +G+FRHLPV+ +G++  ++ I   +   +  +E
Sbjct:   124 VLKRMTEGRFRHLPVMRDGKLCGMITIGDVVNFRLRELE 162

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q0BYV1 HNE_2660 "CBS domain protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 126 (49.4 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 29/98 (29%), Positives = 49/98 (50%)

Query:     4 RRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEA 63
             RR+ A++  D++  + G+L+++DI  +   +     + PV   MTR    + +D    EA
Sbjct:    33 RRIGAVVTLDADGEIVGVLSERDIVRQFARQGEGALDMPVGNAMTRAVITISADAEVDEA 92

Query:    64 LQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARME 101
             LQ M   + RHLPVV N  +   + I   +   IA  +
Sbjct:    93 LQLMTDRRIRHLPVVRNSRLTGFVSIGDLVKWKIAETQ 130

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0DH79	Y5064_ARATH	No assigned EC number	0.7528	0.9295	0.6259	yes	no
Q0WLC7	Y5053_ARATH	No assigned EC number	0.7528	0.9295	0.6259	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	369
cd04587	113	cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd	7e-50
cd04587	113	cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd	2e-35
cd04800	111	cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c	1e-22
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	2e-22
cd04800	111	cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c	4e-22
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	4e-22
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	3e-21
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	7e-20
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	7e-16
cd04604	114	cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contain	2e-15
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	2e-14
cd04633	121	cd04633, CBS_pair_20, The CBS domain, named after	2e-14
cd04611	111	cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd co	2e-14
cd04624	112	cd04624, CBS_pair_11, The CBS domain, named after	1e-13
COG2905	610	COG2905, COG2905, Predicted signal-transduction pr	1e-12
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	3e-12
cd04624	112	cd04624, CBS_pair_11, The CBS domain, named after	3e-12
cd04636	132	cd04636, CBS_pair_23, The CBS domain, named after	3e-12
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	5e-12
cd04802	112	cd04802, CBS_pair_3, The CBS domain, named after h	6e-12
cd04607	113	cd04607, CBS_pair_NTP_transferase_assoc, This cd c	9e-12
cd04607	113	cd04607, CBS_pair_NTP_transferase_assoc, This cd c	2e-11
COG2905	610	COG2905, COG2905, Predicted signal-transduction pr	1e-10
cd04803	122	cd04803, CBS_pair_15, The CBS domain, named after	1e-10
cd04604	114	cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contain	2e-10
cd04611	111	cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd co	2e-10
cd04601	110	cd04601, CBS_pair_IMPDH, This cd contains two tand	7e-10
cd04637	122	cd04637, CBS_pair_24, The CBS domain, named after	2e-09
cd04589	111	cd04589, CBS_pair_CAP-ED_DUF294_assoc_bac, This cd	3e-09
cd04600	124	cd04600, CBS_pair_HPP_assoc, This cd contains two	6e-09
pfam00571	57	pfam00571, CBS, CBS domain	6e-09
cd04586	135	cd04586, CBS_pair_BON_assoc, This cd contains two	6e-09
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	9e-09
cd04625	112	cd04625, CBS_pair_12, The CBS domain, named after	1e-08
cd04605	110	cd04605, CBS_pair_MET2_assoc, This cd contains two	1e-08
PTZ00314	495	PTZ00314, PTZ00314, inosine-5'-monophosphate dehyd	2e-08
COG2524	294	COG2524, COG2524, Predicted transcriptional regula	2e-08
cd04633	121	cd04633, CBS_pair_20, The CBS domain, named after	3e-08
cd04583	109	cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contai	3e-08
cd04635	122	cd04635, CBS_pair_22, The CBS domain, named after	4e-08
cd04620	115	cd04620, CBS_pair_7, The CBS domain, named after h	6e-08
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	9e-08
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	1e-07
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	1e-07
cd04630	114	cd04630, CBS_pair_17, The CBS domain, named after	1e-07
TIGR01302	450	TIGR01302, IMP_dehydrog, inosine-5'-monophosphate	1e-07
cd04610	107	cd04610, CBS_pair_ParBc_assoc, This cd contains tw	1e-07
cd04802	112	cd04802, CBS_pair_3, The CBS domain, named after h	2e-07
cd04630	114	cd04630, CBS_pair_17, The CBS domain, named after	2e-07
PRK05567	486	PRK05567, PRK05567, inosine 5'-monophosphate dehyd	2e-07
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	2e-07
COG3448	382	COG3448, COG3448, CBS-domain-containing membrane p	8e-07
cd04583	109	cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contai	9e-07
pfam00571	57	pfam00571, CBS, CBS domain	2e-06
cd04629	114	cd04629, CBS_pair_16, The CBS domain, named after	2e-06
cd04638	106	cd04638, CBS_pair_25, The CBS domain, named after	2e-06
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	3e-06
cd04609	110	cd04609, CBS_pair_PALP_assoc2, This cd contains tw	3e-06
cd04641	120	cd04641, CBS_pair_28, The CBS domain, named after	4e-06
cd04606	109	cd04606, CBS_pair_Mg_transporter, This cd contains	4e-06
cd04620	115	cd04620, CBS_pair_7, The CBS domain, named after h	5e-06
cd04596	108	cd04596, CBS_pair_DRTGG_assoc, This cd contains tw	6e-06
pfam00571	57	pfam00571, CBS, CBS domain	9e-06
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	1e-05
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	1e-05
pfam00478	467	pfam00478, IMPDH, IMP dehydrogenase / GMP reductas	1e-05
cd04602	114	cd04602, CBS_pair_IMPDH_2, This cd contains two ta	1e-05
cd04637	122	cd04637, CBS_pair_24, The CBS domain, named after	2e-05
cd04629	114	cd04629, CBS_pair_16, The CBS domain, named after	2e-05
TIGR00393	268	TIGR00393, kpsF, KpsF/GutQ family protein	2e-05
cd04617	118	cd04617, CBS_pair_4, The CBS domain, named after h	2e-05
cd04596	108	cd04596, CBS_pair_DRTGG_assoc, This cd contains tw	3e-05
cd04588	110	cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This c	3e-05
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	4e-05
cd04613	114	cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd con	4e-05
cd04589	111	cd04589, CBS_pair_CAP-ED_DUF294_assoc_bac, This cd	5e-05
cd04634	143	cd04634, CBS_pair_21, The CBS domain, named after	5e-05
cd04625	112	cd04625, CBS_pair_12, The CBS domain, named after	7e-05
TIGR00393	268	TIGR00393, kpsF, KpsF/GutQ family protein	7e-05
PRK14869	546	PRK14869, PRK14869, putative manganese-dependent i	8e-05
cd04595	110	cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd con	9e-05
cd04632	128	cd04632, CBS_pair_19, The CBS domain, named after	1e-04
cd04619	114	cd04619, CBS_pair_6, The CBS domain, named after h	1e-04
cd04803	122	cd04803, CBS_pair_15, The CBS domain, named after	2e-04
cd04613	114	cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd con	2e-04
cd04615	113	cd04615, CBS_pair_2, The CBS domain, named after h	2e-04
cd04633	121	cd04633, CBS_pair_20, The CBS domain, named after	3e-04
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	4e-04
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	4e-04
cd04637	122	cd04637, CBS_pair_24, The CBS domain, named after	4e-04
cd04605	110	cd04605, CBS_pair_MET2_assoc, This cd contains two	4e-04
PRK05567	486	PRK05567, PRK05567, inosine 5'-monophosphate dehyd	4e-04
cd04638	106	cd04638, CBS_pair_25, The CBS domain, named after	4e-04
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	4e-04
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	5e-04
cd04600	124	cd04600, CBS_pair_HPP_assoc, This cd contains two	6e-04
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	7e-04
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	9e-04
cd04599	105	cd04599, CBS_pair_GGDEF_assoc2, This cd contains t	0.001
PRK10892	326	PRK10892, PRK10892, D-arabinose 5-phosphate isomer	0.001
cd04593	115	cd04593, CBS_pair_EriC_assoc_bac_arch, This cd con	0.001
cd04643	116	cd04643, CBS_pair_30, The CBS domain, named after	0.001
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	0.002
cd04599	105	cd04599, CBS_pair_GGDEF_assoc2, This cd contains t	0.002
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	0.003
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	0.003
COG2239	451	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains	0.003
COG2905	610	COG2905, COG2905, Predicted signal-transduction pr	0.004
cd04602	114	cd04602, CBS_pair_IMPDH_2, This cd contains two ta	0.004
cd04634	143	cd04634, CBS_pair_21, The CBS domain, named after	0.004
PRK07807	479	PRK07807, PRK07807, inosine 5-monophosphate dehydr	0.004
COG4109	432	COG4109, COG4109, Predicted transcriptional regula	0.004

>gnl|CDD|239960 cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score =  162 bits (413), Expect = 7e-50
 Identities = 65/113 (57%), Positives = 82/113 (72%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 211
           +K  T+SPT TV  A K M E R+S  +V   NK  GI TSKDI +RV++Q L  +STLV
Sbjct: 1   TKPATVSPTTTVQEAAKLMREKRVSCVLVMDGNKLVGIFTSKDIALRVVAQGLDPESTLV 60

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264
           E+VMTPNP CAT DTP+++ALH+M  GKF HLPVVD+ G VV ++DV  +THA
Sbjct: 61  ERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTHA 113

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|239960 cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score =  125 bits (315), Expect = 2e-35
 Identities = 50/96 (52%), Positives = 64/96 (66%), Gaps = 2/96 (2%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M  +RV  +L+ D N L  GI T KDIA RV+A+ L+ E T V +VMT NP    SDT  
Sbjct: 19  MREKRVSCVLVMDGNKL-VGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPV 77

Query: 61  VEALQKMVQGKFRHLPVV-ENGEVIALLDIAKCLYD 95
           +EAL  MVQGKFRHLPVV ++G+V+ LLD+ K  + 
Sbjct: 78  LEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTHA 113

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 91.0 bits (227), Expect = 1e-22
 Identities = 40/104 (38%), Positives = 59/104 (56%), Gaps = 2/104 (1%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVE 212
             VT SP  T+  A + M E R+SS +V  + +  GI+T +D+  RV+++ L  D T V 
Sbjct: 2   PPVTCSPDTTIREAARLMTEHRVSSLLVVDDGRLVGIVTDRDLRNRVVAEGLDPD-TPVS 60

Query: 213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
           +VMT  P     D  + +AL +M +    HLPVVD DG +V V+
Sbjct: 61  EVMTAPPITIPPDATVFEALLLMLERGIHHLPVVD-DGRLVGVI 103

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 90.3 bits (225), Expect = 2e-22
 Identities = 33/89 (37%), Positives = 55/89 (61%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MA + + A+++ D    L GI +++DI  +V  R  +  +TPVS++MTRN   V  D   
Sbjct: 19  MAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTV 78

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDI 89
            EA+  M + +FRHLPVV+ G+++ ++ I
Sbjct: 79  DEAMALMTERRFRHLPVVDGGKLVGIVSI 107

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 89.9 bits (224), Expect = 4e-22
 Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 2/84 (2%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M   RV +LL+ D +  L GI+TD+D+  RV+A  L+ + TPVS+VMT  P  +  D   
Sbjct: 19  MTEHRVSSLLVVD-DGRLVGIVTDRDLRNRVVAEGLDPD-TPVSEVMTAPPITIPPDATV 76

Query: 61  VEALQKMVQGKFRHLPVVENGEVI 84
            EAL  M++    HLPVV++G ++
Sbjct: 77  FEALLLMLERGIHHLPVVDDGRLV 100

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 89.9 bits (224), Expect = 4e-22
 Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 2/105 (1%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSSAVVT-VENKPRGILTSKDILMRVISQNLPADSTLV 211
            V+T+ P  TV  A K M E  + + VV     +  GI + +DI+ +V  +   A  T V
Sbjct: 2   DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPV 61

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
            ++MT N    T D  + +A+ +M + +F HLPVVD  G +V +V
Sbjct: 62  SEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVD-GGKLVGIV 105

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 87.6 bits (218), Expect = 3e-21
 Identities = 36/105 (34%), Positives = 58/105 (55%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 211
             VVT+SP DT+  A + M E  + +  V   ++  GI+T +DI++R +++    D+T V
Sbjct: 1   RDVVTVSPDDTIREAARLMREHDVGALPVCENDRLVGIVTDRDIVVRAVAEGRDPDTTTV 60

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
             VMT      T D  + +A  +M + +   LPVVD DG +V +V
Sbjct: 61  GDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIV 105

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 83.6 bits (207), Expect = 7e-20
 Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 2/106 (1%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVISQNLPADSTL 210
             VVT+SP DTV  A + MLE  +S   V  ++ +  GI+T +D+ +R +++        
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDL-LRALAEGGLDPLVT 59

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
           V  VMT +    + DT + +A  +M +     LPVVD +G +V +V
Sbjct: 60  VGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIV 105

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 72.9 bits (179), Expect = 7e-16
 Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 5/113 (4%)

Query: 151 KSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTL 210
              V+T+ P  +V  A   M E  +S+  V  + K  GI+T +DIL  + +         
Sbjct: 6   TKDVITVKPDTSVRDALLLMSENGVSAVPVVDDGKLVGIITERDILRALAAGG--KRLLP 63

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDG-KFLHLPVVDRDGDVVDVVDVIHIT 262
           V++VMT        DTP+ +AL +M +  K   LPVVD DG    +V +I ++
Sbjct: 64  VKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGG--KLVGIITLS 114

Length = 117

>gnl|CDD|239977 cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

 Score = 71.8 bits (177), Expect = 2e-15
 Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 2/90 (2%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M+ + +    + D +  L GI TD D+  R + + L++   PV+ VMTRNP  +  D LA
Sbjct: 20  MSRKGLGMTAVVDEDGRLVGIFTDGDLR-RALEKGLDILTLPVADVMTRNPKTIDPDALA 78

Query: 61  VEALQKMVQGKFRHLPVV-ENGEVIALLDI 89
            EAL+ M + K   LPVV +NG  + +L I
Sbjct: 79  AEALELMEENKITALPVVDDNGRPVGVLHI 108

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 68.3 bits (168), Expect = 2e-14
 Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 5/96 (5%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M    V AL + +++ L+ GI+TD+DI  R +A   + + T V  VMTR    V  D   
Sbjct: 19  MREHDVGALPVCENDRLV-GIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDV 77

Query: 61  VEALQKMVQGKFRHLPVVENGE----VIALLDIAKC 92
            EA + M + + R LPVV++      +++L D+A+ 
Sbjct: 78  DEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLARA 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 68.8 bits (169), Expect = 2e-14
 Identities = 36/114 (31%), Positives = 50/114 (43%), Gaps = 10/114 (8%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVIS---------Q 202
             V+T+SP D V  A + ML+  +S   V    K  GI+T KDI   + S         Q
Sbjct: 1   KPVITVSPDDRVSHARRLMLDHDISRLPVIEGGKLVGIVTEKDIADALRSFRPLVRDRHQ 60

Query: 203 NLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
                +  V  +MT        DT + D   +M +     LPVVD DG +V +V
Sbjct: 61  ERRIRNLPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVD-DGKLVGIV 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121

>gnl|CDD|239984 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

 Score = 68.4 bits (168), Expect = 2e-14
 Identities = 34/110 (30%), Positives = 60/110 (54%), Gaps = 5/110 (4%)

Query: 154 VVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEK 213
           ++T  P  ++  A  +M E R+SS VV  + +P GI+T +DIL R+++      + + E 
Sbjct: 3   ILTCPPDTSLAEAASRMRERRISSIVVVDDGRPLGIVTERDIL-RLLASGPDLQTPVGE- 60

Query: 214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIH 260
           VM+        DT + DA  +M +    HL VVD DG+++ ++   D++ 
Sbjct: 61  VMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239996 cd04624, CBS_pair_11, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 66.1 bits (162), Expect = 1e-13
 Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 6/96 (6%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MA   V ++++ D +    GI+T++DI  R +A  ++L+ TPVS++MTR+   V  D   
Sbjct: 19  MAEENVGSVVVVDPDERPIGIVTERDI-VRAVAAGIDLD-TPVSEIMTRDLVTVDPDEPV 76

Query: 61  VEALQKMVQGKFRHLPVVENGE----VIALLDIAKC 92
            EA + M +   RH  VV+ G     VI++ D+ + 
Sbjct: 77  AEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVRE 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|225457 COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

 Score = 68.9 bits (169), Expect = 1e-12
 Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M    V +L++ D +  L GI+T KD+ +RVIA +   +   VS+VMT     V      
Sbjct: 175 MKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIA-DGRSKTQKVSEVMTSPVISVDRGDFL 233

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCL 93
            EA+  M++ + +HLPV E+G+ + +L +   L
Sbjct: 234 FEAMLMMLRNRIKHLPVTEDGQPLGILTLTDIL 266

Length = 610

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 62.4 bits (152), Expect = 3e-12
 Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M    +  L + D +  L GI+T++D+  R +A         V  VMTR+   V  DT  
Sbjct: 19  MLEHGISGLPVVDDDGRLVGIVTERDLL-RALAEGGLDPLVTVGDVMTRDVVTVSPDTSL 77

Query: 61  VEALQKMVQGKFRHLPVVENGE----VIALLDIAK 91
            EA + M++   R LPVV++      ++   DI +
Sbjct: 78  EEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239996 cd04624, CBS_pair_11, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 62.3 bits (152), Expect = 3e-12
 Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 3/106 (2%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTL 210
             VVT+ P  ++  A K M E  + S VV   + +P GI+T +DI+ R ++  +    T 
Sbjct: 1   RPVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIV-RAVAAGID-LDTP 58

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
           V ++MT +      D P+ +A  +M      H  VVD+ G++V V+
Sbjct: 59  VSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVI 104

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|240007 cd04636, CBS_pair_23, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 62.8 bits (153), Expect = 3e-12
 Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 24/130 (18%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTL- 210
            V+T+   DT+    + +L  ++S   VV  E +  GI++  D++ ++         TL 
Sbjct: 2   DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVTLL 61

Query: 211 ------------------VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDV 252
                             VE++MT        DT I D   IM       LPVVD DG +
Sbjct: 62  YSVIFLDESKIKKLLGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVD-DGKL 120

Query: 253 VDVV---DVI 259
           V ++   D+I
Sbjct: 121 VGIISRGDII 130

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 132

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 61.9 bits (151), Expect = 5e-12
 Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 9/113 (7%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQ---------N 203
             +T++P  +++ A K M E  +    V    K  GI+T +D+ +   S+          
Sbjct: 2   NPITVTPDTSLMEALKLMKENSIRRLPVVDRGKLVGIVTDRDLKLASPSKATTLDIWELY 61

Query: 204 LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
                  V  +MT +P   + D  + +A  +M + K   LPVVD  G +V ++
Sbjct: 62  YLLSKIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGII 114

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|240115 cd04802, CBS_pair_3, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 61.6 bits (150), Expect = 6e-12
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 1/109 (0%)

Query: 154 VVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEK 213
           V+T+ P  TV  A   M E  +   +V    KP GI+T +D++ +V+S+NL      V +
Sbjct: 3   VITVDPDTTVYEAANIMTENNIGRLIVVDNEKPVGIITERDLVKKVVSRNLKPREVPVGE 62

Query: 214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHIT 262
           VM+        +  + +A  +M       LPVVD D ++V +V    I 
Sbjct: 63  VMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVD-DDELVGIVTTTDIV 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|239980 cd04607, CBS_pair_NTP_transferase_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

 Score = 61.0 bits (149), Expect = 9e-12
 Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 3/102 (2%)

Query: 155 VTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVISQNLPADSTLVEK 213
           + +SP  ++L A +K+ +  L   +V  EN +  G +T  DI  R + + L  D   V +
Sbjct: 5   LLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDI-RRALLKGLSLDDP-VSE 62

Query: 214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDV 255
           VM  NP  A + +   + L +M +    HLP++D +G VV +
Sbjct: 63  VMNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGL 104

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|239980 cd04607, CBS_pair_NTP_transferase_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

 Score = 60.2 bits (147), Expect = 2e-11
 Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 3/82 (3%)

Query: 9   LLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMV 68
           +L+ D N  L G +TD DI  R + + L+L+  PVS+VM RNP      +   E L  M 
Sbjct: 28  VLVVDENGRLLGTVTDGDI-RRALLKGLSLD-DPVSEVMNRNPITAKVGSSREEILALMR 85

Query: 69  QGKFRHLPVV-ENGEVIALLDI 89
           +   RHLP++ E G V+ L  +
Sbjct: 86  ERSIRHLPILDEEGRVVGLATL 107

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|225457 COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 3/110 (2%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLV 211
             VT+SP  ++  A +KM +  +SS VV        GI+T KD+  RVI+         V
Sbjct: 158 PAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSKTQK-V 216

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHI 261
            +VMT           + +A+ +M   +  HLPV + DG  + ++ +  I
Sbjct: 217 SEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDI 265

Length = 610

>gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 58.4 bits (142), Expect = 1e-10
 Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 9/114 (7%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNLPAD--- 207
           S VVT+S  D++  A + M E R+    VV  + K  G+LT +D+L   +S         
Sbjct: 1   SPVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEES 60

Query: 208 -----STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
                   V +VM  +    T DTP+ +A  IM + K   LPVVD  G +V ++
Sbjct: 61  LTKERDVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGII 114

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239977 cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

 Score = 57.5 bits (140), Expect = 2e-10
 Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 5/100 (5%)

Query: 161 DTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE 220
           D +L  ++K L +   +AVV  + +  GI T  D L R + + L   +  V  VMT NP+
Sbjct: 15  DALLEMSRKGLGM---TAVVDEDGRLVGIFTDGD-LRRALEKGLDILTLPVADVMTRNPK 70

Query: 221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIH 260
               D    +AL +M + K   LPVVD +G  V V+  IH
Sbjct: 71  TIDPDALAAEALELMEENKITALPVVDDNGRPVGVLH-IH 109

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239984 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

 Score = 57.6 bits (140), Expect = 2e-10
 Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 4/88 (4%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M  RR+ ++++ D    L GI+T++DI  R++A   +L+ TPV +VM+     V +DT  
Sbjct: 19  MRERRISSIVVVDDGRPL-GIVTERDIL-RLLASGPDLQ-TPVGEVMSSPLLTVPADTSL 75

Query: 61  VEALQKMVQGKFRHLPVV-ENGEVIALL 87
            +A Q M +   RHL VV ++GE++ LL
Sbjct: 76  YDARQLMREHGIRHLVVVDDDGELLGLL 103

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 55.6 bits (135), Expect = 7e-10
 Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 8/99 (8%)

Query: 154 VVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTLVE 212
            +T+SP  TV  A + M E  +S   VV  + K  GI+T++D  +R  +         V 
Sbjct: 4   PITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRD--LRFETD----LDKPVS 57

Query: 213 KVMTPNPECAT-IDTPIVDALHIMHDGKFLHLPVVDRDG 250
           +VMTP     T   T + +AL ++H+ K   LPVVD +G
Sbjct: 58  EVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEG 96

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 110

>gnl|CDD|240008 cd04637, CBS_pair_24, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 11/114 (9%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNL------PA 206
           +VVT+   D +    +   + +    +V  +N+  G+++ +D L + IS  L        
Sbjct: 2   RVVTVEMDDRLEEVREIFEKHKFHHLLVVEDNELVGVISDRDYL-KAISPFLGTAGETEK 60

Query: 207 D----STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
           D    +    ++MT +P   + DTP+ +A  ++ +     LPVVD +G ++ ++
Sbjct: 61  DLATLNRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGII 114

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239962 cd04589, CBS_pair_CAP-ED_DUF294_assoc_bac, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 53.8 bits (130), Expect = 3e-09
 Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 2/105 (1%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVE 212
             + +  + ++  A + M E    + +V   +   GI+T  D+L  V+   LP+ ST V 
Sbjct: 2   PPLIVDASTSIRDAARLMREHGADALLVRDGDPRLGIVTRTDLLDAVLLDGLPS-STPVG 60

Query: 213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVD 257
           ++ T        D  + +AL +M   + +H  VV   G+VV V++
Sbjct: 61  EIATFPLITVDPDDFLFNALLLMTRHR-IHRVVVREGGEVVGVLE 104

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239973 cd04600, CBS_pair_HPP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

 Score = 53.4 bits (129), Expect = 6e-09
 Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 10/113 (8%)

Query: 154 VVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRV-------ISQNLP 205
           VVT++P  ++  A   +   R+ +  VV  + +  GI+T +D+L          +   L 
Sbjct: 4   VVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLR 63

Query: 206 ADST--LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
                  V  +M+P       DTPI + + ++ DG   H+PVVD D  +V +V
Sbjct: 64  GRDKPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIV 116

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 51.4 bits (124), Expect = 6e-09
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264
           V+ +MTP+      DT + +AL +M +     LPVVD DG +V +V +  +  A
Sbjct: 1   VKDIMTPDVVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDLLRA 54

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|239959 cd04586, CBS_pair_BON_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

 Score = 53.4 bits (129), Expect = 6e-09
 Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 23/127 (18%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTL 210
           + VVT+SP  +V  A + ML+  +S   VV  + +  GI++  D+L R         +  
Sbjct: 2   TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARW 61

Query: 211 ---------------------VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRD 249
                                V  VMT        DTP+ +   +M + +   +PVV R 
Sbjct: 62  LDLLAGAEELAAAFVRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVV-RG 120

Query: 250 GDVVDVV 256
           G +V +V
Sbjct: 121 GRLVGIV 127

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 135

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 52.6 bits (127), Expect = 9e-09
 Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 13/122 (10%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDIL---------MRVIS 201
             VVTI+PT T+  A + M E ++    VV  E +  GI+T +D+          +    
Sbjct: 1   RDVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHE 60

Query: 202 QNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDV--VDVVDVI 259
             L      V+++MT +         + +A  +M + +   LPVV+    V  +   D++
Sbjct: 61  LYLLLKMP-VKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVEDGRLVGIITETDLL 119

Query: 260 HI 261
             
Sbjct: 120 RT 121

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|239997 cd04625, CBS_pair_12, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 1/101 (0%)

Query: 156 TISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVM 215
           T++P   +  A   M E  L S VV    +  G+LT +++L  +         T V  +M
Sbjct: 5   TVAPETLLSEAVATMAEQDLGSLVVMERGELVGLLTFREVLQAMAQHGAGVLDTTVRAIM 64

Query: 216 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
            P P  A+ D  I +   +M +    +LPV+D  G ++ V+
Sbjct: 65  NPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVI 104

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|239978 cd04605, CBS_pair_MET2_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

 Score = 51.9 bits (125), Expect = 1e-08
 Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 6/112 (5%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNLPADSTL 210
             VVTIS   ++  A K M+E  ++   VV  + +  GI+TS D     IS+ +  D   
Sbjct: 2   RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWD-----ISKAVARDKKS 56

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHIT 262
           VE +MT N   AT D PI  A   M       LPVVD +  V+ ++    I+
Sbjct: 57  VEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDIS 108

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|240355 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase; Provisional

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 20/112 (17%)

Query: 155 VTISPTDTVLMATKKMLELR----LSSAVVTVENKPR----GILTSKDILMRVISQNLPA 206
             +SP  TV      +LE++     SS ++TV+ K      GI+TS+DI        +  
Sbjct: 107 YVLSPNHTV----ADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDID------FVKD 156

Query: 207 DSTLVEKVMTPNPECATIDTPIV--DALHIMHDGKFLHLPVVDRDGDVVDVV 256
            ST V +VMTP  +    +TPI   +A  ++ + +   LP+V+ +G++V +V
Sbjct: 157 KSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALV 208

Length = 495

>gnl|CDD|225321 COG2524, COG2524, Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 3/106 (2%)

Query: 151 KSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTL 210
             K++T+ P DT+  A K   E  +  A V  ++K  GI+T  DI   + + NL A    
Sbjct: 179 SKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDDKIVGIITLSDIAKAIANGNLDAK--- 235

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
           V   M  N      D  I DA+ +M+      L V D +G  V ++
Sbjct: 236 VSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGII 281

Length = 294

>gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 51.1 bits (123), Expect = 3e-08
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 10/93 (10%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIA-RELNLEET--------PVSKVMTRNP 51
           M    +  L + +   L+ GI+T+KDIA  + + R L  +          PVS +MTR  
Sbjct: 19  MLDHDISRLPVIEGGKLV-GIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPV 77

Query: 52  TFVLSDTLAVEALQKMVQGKFRHLPVVENGEVI 84
             +  DT   +    M++     LPVV++G+++
Sbjct: 78  ITIEPDTSVSDVASLMLENNIGGLPVVDDGKLV 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121

>gnl|CDD|239956 cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

 Score = 50.6 bits (122), Expect = 3e-08
 Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 7/105 (6%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSSAVVT-VENKPRGILTSKDILMRVISQNLPADSTLV 211
             VTI+P  T+  A K M + ++ S +V   +NK  GI++ + +      +    ++  +
Sbjct: 3   NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESL------EQAYKEAKSL 56

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
           E +M  +      D  + D L ++      ++PVVD DG +V ++
Sbjct: 57  EDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLI 101

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|240006 cd04635, CBS_pair_22, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 50.9 bits (122), Expect = 4e-08
 Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 9/114 (7%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMR--------VISQN 203
           + VT +P D V      MLE   +   VV    +  GI+T +DI+             + 
Sbjct: 2   EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRT 61

Query: 204 LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVD 257
               S  VEK+M+      T D  I  A+ +M +     LPVV+    +V +VD
Sbjct: 62  QTKASPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVD 115

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239992 cd04620, CBS_pair_7, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 50.4 bits (121), Expect = 6e-08
 Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 4/104 (3%)

Query: 156 TISPTDTVLMATKKMLELRLSSAVVTVENKP-RGILTSKDILMRVISQNLPADSTLVEKV 214
           T++P   V  A   M +   SS V+ VE     GI T +DI+ R+ +         + +V
Sbjct: 5   TVTPDTPVADAIALMSQQGDSSCVLVVEKGRLLGIFTERDIV-RLTAIGKDLSDLPIGEV 63

Query: 215 MTPNPECATID--TPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
           MT             I  AL +    +  HLPV+D  G ++ +V
Sbjct: 64  MTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLV 107

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 115

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 49.5 bits (119), Expect = 9e-08
 Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 2/105 (1%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 211
             VVT+    TV      M   R     V  + +  GI+T  DI  R +       + LV
Sbjct: 1   PDVVTVPVDLTVDEVLALMFGERHRGYPVVDDGRLVGIVTLADI--RRVPAEGREATVLV 58

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
             VMT +P  A+ D  + DAL  M +     LPVVD  G +V +V
Sbjct: 59  GDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIV 103

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 4/83 (4%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M+   V A+ + D   L+ GI+T++DI   + A    L   PV +VMT+    V  DT  
Sbjct: 25  MSENGVSAVPVVDDGKLV-GIITERDILRALAAGGKRL--LPVKEVMTKPVVTVDPDTPL 81

Query: 61  VEALQKMVQG-KFRHLPVVENGE 82
            EAL+ MV+  K R LPVV++  
Sbjct: 82  EEALELMVERHKIRRLPVVDDDG 104

Length = 117

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 49.9 bits (120), Expect = 1e-07
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 8/95 (8%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDI--ATRVIARELN------LEETPVSKVMTRNPT 52
           M   ++  L + D    L GI+TD+D+  A+      L+      L + PV ++MT++  
Sbjct: 19  MREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVI 78

Query: 53  FVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALL 87
            V       EA   M + +   LPVVE+G ++ ++
Sbjct: 79  TVHPLDTVEEAALLMREHRIGCLPVVEDGRLVGII 113

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|240001 cd04630, CBS_pair_17, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 49.5 bits (119), Expect = 1e-07
 Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 9/117 (7%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPR-----GILTSKDILMRVISQNLPAD 207
            VVTI    TV  A + M E  +SS VV    K R     GI+T +DIL +V+++    D
Sbjct: 2   NVVTIDGLATVAEALQLMKEHGVSSLVV---EKRRESDAYGIVTMRDILKKVVAEGRDPD 58

Query: 208 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264
              V ++MT      + D  I     +M        PVV+ + +++ ++ +  I  A
Sbjct: 59  RVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVE-NNELIGIISLTDIFLA 114

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 11/110 (10%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPR----GILTSKDILMRVISQNLPAD 207
           S  VTISP  TV    + M    +S   V  +        GI+T +DI      + +   
Sbjct: 88  SDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDI------RFVKDK 141

Query: 208 STLVEKVMTP-NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
              V +VMT            + +AL ++H+ +   LPVVD++G++V ++
Sbjct: 142 GKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLI 191

This model describes IMP dehydrogenase, an enzyme of GMP biosynthesis. This form contains two CBS domains. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 450

>gnl|CDD|239983 cd04610, CBS_pair_ParBc_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 10/110 (9%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVE 212
            V+T+SP +TV    K + E       V    K  GI++++D+L +            VE
Sbjct: 3   DVITVSPDNTVKDVIKLIKETGHDGFPVVDNGKVVGIVSARDLLGK-------DPDETVE 55

Query: 213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVI 259
           ++M+ +   A  +  I+DA  +M       LPVVD + ++V ++   DVI
Sbjct: 56  EIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVI 105

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 107

>gnl|CDD|240115 cd04802, CBS_pair_3, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 1/87 (1%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M    +  L++ D N    GI+T++D+  +V++R L   E PV +VM+     +  +   
Sbjct: 19  MTENNIGRLIVVD-NEKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASL 77

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALL 87
            EA + M +   + LPVV++ E++ ++
Sbjct: 78  NEAAKLMAKHGIKRLPVVDDDELVGIV 104

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|240001 cd04630, CBS_pair_17, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 2/70 (2%)

Query: 20  GILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVE-ALQKMVQGKFRHLPVV 78
           GI+T +DI  +V+A   + +   V ++MT+ P   +S  + ++   + M +   R  PVV
Sbjct: 39  GIVTMRDILKKVVAEGRDPDRVNVYEIMTK-PLISVSPDMDIKYCARLMERTNIRRAPVV 97

Query: 79  ENGEVIALLD 88
           EN E+I ++ 
Sbjct: 98  ENNELIGIIS 107

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed

 Score = 52.5 bits (127), Expect = 2e-07
 Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 16/103 (15%)

Query: 154 VVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNLPADSTLVE 212
            VT++P  T+  A   M    +S   VV    K  GI+T++D  +R  +      S  V 
Sbjct: 97  PVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRD--VRFETD----LSQPVS 150

Query: 213 KVMTPN-----PECATIDTPIVDALHIMHDGKFLHLPVVDRDG 250
           +VMT       PE  T++    +AL ++H+ +   LPVVD +G
Sbjct: 151 EVMTKERLVTVPEGTTLE----EALELLHEHRIEKLPVVDDNG 189

Length = 486

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 42/155 (27%), Positives = 62/155 (40%), Gaps = 39/155 (25%)

Query: 49  RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGE-----VIALLDIAKCLYDAIARMER- 102
           ++   V   T  +EA + MV+  FR LPVV+ G      +I   DI K L       E+ 
Sbjct: 1   KDVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYL----GGGEKF 56

Query: 103 AAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDT 162
              K      A+                  E +R  M              V+TI+P D+
Sbjct: 57  NKIKTGNGLEAIN-----------------EPVRSIM-----------TRNVITITPDDS 88

Query: 163 VLMATKKMLELRLSSA-VVTVENKPRGILTSKDIL 196
           +  A + MLE R+    VV  + K  GI+T +D+L
Sbjct: 89  IKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLL 123

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|225979 COG3448, COG3448, CBS-domain-containing membrane protein [Signal transduction mechanisms]

 Score = 50.2 bits (120), Expect = 8e-07
 Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 8/115 (6%)

Query: 154 VVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDIL---MRVISQNLPADS- 208
           VVT+S   ++  A K + E R+ +  V  E+ +  GI+T +D+L        Q L     
Sbjct: 255 VVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLRFLRP 314

Query: 209 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIH 260
             V+ +MT        DTP V+ +  + D     LPV+D  G +V +V   D+I 
Sbjct: 315 PTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIA 369

Length = 382

>gnl|CDD|239956 cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

 Score = 46.8 bits (112), Expect = 9e-07
 Identities = 20/88 (22%), Positives = 45/88 (51%), Gaps = 7/88 (7%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M  ++VD+LL+ D +  L GI++ + +       +   E   +  +M  +   V  D   
Sbjct: 20  MRDKKVDSLLVVDKDNKLLGIVSLESL------EQAYKEAKSLEDIMLEDVFTVQPDASL 73

Query: 61  VEALQKMVQGKFRHLPVV-ENGEVIALL 87
            + L  +++   +++PVV E+G+++ L+
Sbjct: 74  RDVLGLVLKRGPKYVPVVDEDGKLVGLI 101

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 44.1 bits (105), Expect = 2e-06
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)

Query: 43 VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYD 95
          V  +MT +   V  DT   EAL+ M +     LPVV E+G+++ ++   D+ + L +
Sbjct: 1  VKDIMTPDVVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDLLRALLE 57

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|240000 cd04629, CBS_pair_16, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 45.6 bits (109), Expect = 2e-06
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 3/104 (2%)

Query: 155 VTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADST-LVE 212
           VT +P  +V  A +K+L+ ++S   VV       G L+ +D L +++  +   D    V 
Sbjct: 4   VTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHCDGVATVR 63

Query: 213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
            +MT      + D  IVD   +M   K    PVVD DG +V  +
Sbjct: 64  DIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVD-DGKLVGQI 106

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|240009 cd04638, CBS_pair_25, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 7/73 (9%)

Query: 18  LCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPV 77
           L GI+T KD+         N EE  ++ +MTR+P  V  D    EA + MV+   R +PV
Sbjct: 36  LVGIITRKDLLR-------NPEEEQLALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPV 88

Query: 78  VENGEVIALLDIA 90
           V++G+++ ++ +A
Sbjct: 89  VDDGKLVGIVTVA 101

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 106

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 37/116 (31%), Positives = 51/116 (43%), Gaps = 12/116 (10%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSSAVVT--VENKPRGILTSKDILMRVISQN------- 203
            VVT+ PT  ++ A K M+        V      K  GI+T+ DIL  +           
Sbjct: 2   DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKT 61

Query: 204 ---LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
              L A +  V  +MT N    T D  I DA  +M + +   LPVVD DG +V +V
Sbjct: 62  GNGLEAINEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIV 117

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|239982 cd04609, CBS_pair_PALP_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

 Score = 45.3 bits (108), Expect = 3e-06
 Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 6/109 (5%)

Query: 154 VVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEK 213
           VV+++P DTV  A ++M E  +S   V  + +  G +   D+L  +I       S  V +
Sbjct: 3   VVSVAPDDTVSQAIERMREYGVSQLPVVDDGRVVGSIDESDLLDALIEGK-AKFSLPVRE 61

Query: 214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVI 259
           VM         D PI +   ++  G      VVD  G  V ++   D++
Sbjct: 62  VMGEPLPTVDPDAPIEELSELLDRG--NVAVVVDEGGKFVGIITRADLL 108

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|240012 cd04641, CBS_pair_28, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 45.3 bits (108), Expect = 4e-06
 Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 3/44 (6%)

Query: 221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDV---VDVIHI 261
            A  DTP++D L ++ + +   LP+VD +G VVDV    DVI++
Sbjct: 5   TARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINL 48

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 120

>gnl|CDD|239979 cd04606, CBS_pair_Mg_transporter, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

 Score = 44.8 bits (107), Expect = 4e-06
 Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 19/116 (16%)

Query: 156 TISPTDTVLMATKKMLELRLSSA------VVTVENKPRGILTSKDILMRVISQNLPADST 209
            +    TV  A + +              VV  E +  G+++ +D+L+           T
Sbjct: 1   AVREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA-------DPDT 53

Query: 210 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV------DVVDVI 259
            V  +M  +    + D    +   +      L LPVVD +G +V      DV+DVI
Sbjct: 54  PVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDVI 109

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|239992 cd04620, CBS_pair_7, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 44.6 bits (106), Expect = 5e-06
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 4/73 (5%)

Query: 18  LCGILTDKDIATRVIARELNLEETPVSKVMTRN-PTFVLSDTL-AVEALQKMVQGKFRHL 75
           L GI T++DI  R+ A   +L + P+ +VMT+   T   S+      AL    Q + RHL
Sbjct: 36  LLGIFTERDI-VRLTAIGKDLSDLPIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHL 94

Query: 76  PVVENGE-VIALL 87
           PV+++   +I L+
Sbjct: 95  PVLDDQGQLIGLV 107

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 115

>gnl|CDD|239969 cd04596, CBS_pair_DRTGG_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

 Score = 44.5 bits (106), Expect = 6e-06
 Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 11/111 (9%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNLPADSTLV 211
               ++ TDTV    +   E   S   VV  +NK  GI+TSKD+  +          T +
Sbjct: 3   DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGK-------DPDTTI 55

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVI 259
           EKVMT NP      T +    H+M       LPVVD +  ++ ++   DV+
Sbjct: 56  EKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVL 106

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 108

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 42.2 bits (100), Expect = 9e-06
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVIS 201
             VVT+ P  ++  A + M E  +S   V  E+ K  GI+T +D+L  ++ 
Sbjct: 7   PDVVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDLLRALLE 57

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 35/150 (23%), Positives = 57/150 (38%), Gaps = 41/150 (27%)

Query: 49  RNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALLDIAKCLYDAIARMERAAEKG 107
           R+   V  D    EAL+ M++     LPVV ++G ++ ++       D +  +       
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTER----DLLRALAE----- 51

Query: 108 KAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMAT 167
                              G    + T+ + M R            VVT+SP  ++  A 
Sbjct: 52  -------------------GGLDPLVTVGDVMTRD-----------VVTVSPDTSLEEAA 81

Query: 168 KKMLELRLSS-AVVTVENKPRGILTSKDIL 196
           + MLE  +    VV  E +  GI+T  DIL
Sbjct: 82  ELMLEHGIRRLPVVDDEGRLVGIVTRSDIL 111

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 11/97 (11%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDI-------ATRVIARELN--LEETPVSKVMTRNP 51
           M    +  L + D   L+ GI+TD+D+       AT +   EL   L +  VS +MTR+P
Sbjct: 19  MKENSIRRLPVVDRGKLV-GIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDP 77

Query: 52  TFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALL 87
             V  D    EA + M++ K   LPVV+  G ++ ++
Sbjct: 78  ITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGII 114

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|215936 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 4/105 (3%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 211
           +  VT+SP  TV  A +      +S   VT + K  G L        +           V
Sbjct: 90  TDPVTVSPDTTVAEALELKERYGISGVPVTEDGKLLGGLVGIRTSRDI----DFLSKVSV 145

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
              MT +   A     + +A  I+H+ K   LP+VD DG++V ++
Sbjct: 146 VMTMTEDLVTAPEGITLEEANEILHEHKIEKLPIVDDDGELVGLI 190

This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family. Length = 467

>gnl|CDD|239975 cd04602, CBS_pair_IMPDH_2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 43.3 bits (103), Expect = 1e-05
 Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 16/110 (14%)

Query: 155 VTISPTDTV--LMATKKMLELRLSSAVVTVENKPR----GILTSKDILMRVISQNLPADS 208
             +SP  TV  ++  K+  +   S   VT + K      GI+TS+DI        L    
Sbjct: 5   SVLSPDHTVADVLEIKE--KKGFSGIPVTEDGKSGGKLLGIVTSRDI------DFLTDSE 56

Query: 209 TLVEKVMTPNPECATIDTPIV--DALHIMHDGKFLHLPVVDRDGDVVDVV 256
           T + +VMTP        T I   +A  I+ + K   LP+V+ DG++V +V
Sbjct: 57  TPLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALV 106

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 114

>gnl|CDD|240008 cd04637, CBS_pair_24, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 33/129 (25%), Positives = 52/129 (40%), Gaps = 30/129 (23%)

Query: 69  QGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128
           + KF HL VVE+ E++ ++     L              KAI+  +         +    
Sbjct: 21  KHKFHHLLVVEDNELVGVISDRDYL--------------KAISPFLG--------TAGET 58

Query: 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPR 187
              + TL  R        I+      +T+SP   V  A+K +LE  +S   VV    +  
Sbjct: 59  EKDLATLNRRA-----HQIM--TRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLI 111

Query: 188 GILTSKDIL 196
           GI+T KD+L
Sbjct: 112 GIITWKDLL 120

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|240000 cd04629, CBS_pair_16, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 1/76 (1%)

Query: 13  DSNALLCGILTDKDIATRVI-ARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGK 71
           D N  L G L+++D   +++ +         V  +MT     V  D   V+  Q M++ K
Sbjct: 31  DDNGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSIVDLAQLMLKAK 90

Query: 72  FRHLPVVENGEVIALL 87
            +  PVV++G+++  +
Sbjct: 91  PKRYPVVDDGKLVGQI 106

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|129488 TIGR00393, kpsF, KpsF/GutQ family protein

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 9/105 (8%)

Query: 156 TISPTDTVLMATKKMLELRLSSAVVTVENKP-RGILTSKDI---LMRVISQNLPADSTLV 211
            I+PT +   A  +M E RL SA+V  EN    G+ T  D+   L+   S         V
Sbjct: 168 LIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLGGGSLKSE-----V 222

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
              MT  P+   +D  +++AL  +   K   L VVD    V+ V+
Sbjct: 223 RDFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVL 267

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli [Energy metabolism, Sugars]. Length = 268

>gnl|CDD|239989 cd04617, CBS_pair_4, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 3/77 (3%)

Query: 6  VDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNP--TFVLSDTLAVEA 63
          V +L + D +  L G+++ KD+    I    +L++ PV  +MTR P  T    +   +EA
Sbjct: 24 VGSLFVVDEDGDLVGVVSRKDLLKASIGGA-DLQKVPVGVIMTRMPNITTTTPEESVLEA 82

Query: 64 LQKMVQGKFRHLPVVEN 80
           +K+++ +   LPVVE 
Sbjct: 83 AKKLIEHQVDSLPVVEK 99

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 118

>gnl|CDD|239969 cd04596, CBS_pair_DRTGG_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

 Score = 42.2 bits (100), Expect = 3e-05
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 7/68 (10%)

Query: 13 DSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKF 72
          D    + GI+T KD+A +         +T + KVMT+NP  V   T        M+    
Sbjct: 32 DEKNKVVGIVTSKDVAGK-------DPDTTIEKVMTKNPITVNPKTSVASVAHMMIWEGI 84

Query: 73 RHLPVVEN 80
            LPVV++
Sbjct: 85 EMLPVVDD 92

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 108

>gnl|CDD|239961 cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 6/112 (5%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVE 212
            ++T++P  T+  A +      +  A V  + K  GI+T  DI    I++ L      V+
Sbjct: 2   PLITLNPNATLREAARLFNTHHIHGAPVVDDGKLVGIVTLSDIAH-AIARGLE--LAKVK 58

Query: 213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIHI 261
            VMT +      D  + DA+ +M+      L V D +G  V ++   D++  
Sbjct: 59  DVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILRS 110

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 42.2 bits (100), Expect = 4e-05
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 6/78 (7%)

Query: 18  LCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPV 77
           L GI+T  DI  R +  E       V  VMTR+P     D    +AL++M +     LPV
Sbjct: 35  LVGIVTLADI--RRVPAEGREATVLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPV 92

Query: 78  VENGE----VIALLDIAK 91
           V++      +++  D+ +
Sbjct: 93  VDDSGRLVGIVSRSDLLR 110

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239986 cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 42.2 bits (100), Expect = 4e-05
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 10 LLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQ 69
           + D +  L GI++  DI   ++      +    S +MT+ P  V  +    +AL+K   
Sbjct: 28 PVVDDDGRLVGIVSLDDIRE-ILFDPSLYDLVVASDIMTKPPVVVYPEDSLEDALKKFED 86

Query: 70 GKFRHLPVVENGE 82
            +  LPVV++  
Sbjct: 87 SDYEQLPVVDDDP 99

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239962 cd04589, CBS_pair_CAP-ED_DUF294_assoc_bac, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 41.8 bits (99), Expect = 5e-05
 Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 2/88 (2%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M     DALL+ D +  L GI+T  D+    +  +     TPV ++ T     V  D   
Sbjct: 19  MREHGADALLVRDGDPRL-GIVTRTDL-LDAVLLDGLPSSTPVGEIATFPLITVDPDDFL 76

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLD 88
             AL  M + +   + V E GEV+ +L+
Sbjct: 77  FNALLLMTRHRIHRVVVREGGEVVGVLE 104

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|240005 cd04634, CBS_pair_21, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 36/143 (25%), Positives = 56/143 (39%), Gaps = 35/143 (24%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQN------LP 205
              +T +  DT+  A + + E ++S A V    K  GI++  DIL  +++ +      LP
Sbjct: 1   KNPITCNADDTISDAARLLRENKISGAPVLDGGKLVGIVSESDILKLLVTHDPSGNLWLP 60

Query: 206 -------------------------ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
                                    A    V  +MT      + D  I DA  +M   K 
Sbjct: 61  SPLELIELPLREFINWEETKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKI 120

Query: 241 LHLPVVDRDGDVVDVV---DVIH 260
             LPVV+ DG +V +V   D+I 
Sbjct: 121 KRLPVVE-DGRLVGIVTRGDIIE 142

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 143

>gnl|CDD|239997 cd04625, CBS_pair_12, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 4/94 (4%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MA + + +L++ +   L+ G+LT +++   +      + +T V  +M   P     D   
Sbjct: 19  MAEQDLGSLVVMERGELV-GLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSI 77

Query: 61  VEALQKMVQGKFRHLPVVENGE---VIALLDIAK 91
            E  + MV+   R+LPV++ G    VI+  D+AK
Sbjct: 78  DEVRRLMVERHLRYLPVLDGGTLLGVISFHDVAK 111

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|129488 TIGR00393, kpsF, KpsF/GutQ family protein

 Score = 43.6 bits (103), Expect = 7e-05
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 3/88 (3%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M+ +R+ + ++ D N  L G+ TD D+  R         ++ V   MT  P     D L 
Sbjct: 182 MSEKRLGSAIVCDENNQLVGVFTDGDL--RRALLGGGSLKSEVRDFMTLGPKTFKLDALL 239

Query: 61  VEALQKMVQGKFRHLPVV-ENGEVIALL 87
           +EAL+ + + K   L VV ++ +V+ +L
Sbjct: 240 LEALEFLERRKITSLVVVDDHNKVLGVL 267

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli [Energy metabolism, Sugars]. Length = 268

>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic pyrophosphatase; Provisional

 Score = 44.1 bits (105), Expect = 8e-05
 Identities = 54/243 (22%), Positives = 91/243 (37%), Gaps = 41/243 (16%)

Query: 40  ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGE----VIALLDIAKCLYD 95
           +  V  +    P  V  DT   EA   M +   + LPVV+       +++L D+A+   D
Sbjct: 67  KPQVRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMD 126

Query: 96  A--IARMERAAEKGKAIAAAVEGVEKHWGTSISG-PNTFIETLRER---MFRPSLSTIIP 149
                 + ++    + I   ++      G  + G     +E  +     M   SL   I 
Sbjct: 127 ILDPEILSKSPTSLENIIRTLD------GEVLVGAEEDKVEEGKVVVAAMAPESLLERIE 180

Query: 150 EKSKVVTISPTDTVLMATKKMLELRLSSAVVT--------VENKPRG-----ILTSKD-- 194
           E   V+     D  L A    +E  +   ++T        V    +      I T  D  
Sbjct: 181 EGDIVIVGDREDIQLAA----IEAGVRLLIITGGAPVSEDVLELAKENGVTVISTPYDTF 236

Query: 195 ILMRVISQNLPADSTLVEKVM-TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 253
              R+I+Q++P     V  +M T +    + D  + D   +M   ++   PVVD DG VV
Sbjct: 237 TTARLINQSIP-----VSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVV 291

Query: 254 DVV 256
            V+
Sbjct: 292 GVI 294

Length = 546

>gnl|CDD|239968 cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

 Score = 41.0 bits (97), Expect = 9e-05
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 18 LCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPV 77
          + GI++ +D+     A    L   PV   M+ +   V  DT   E  + MV+     +PV
Sbjct: 36 VVGIISRRDV---EKALRHGLGHAPVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPV 92

Query: 78 VENGEVI 84
          VE+G ++
Sbjct: 93 VEDGRLV 99

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|240003 cd04632, CBS_pair_19, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 5/65 (7%)

Query: 137 ERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVT---VENKPRGILTSK 193
           ERM    +   +   S V+T SP D+V  A  +MLE   SS VV     + K  GILT K
Sbjct: 66  ERMLDLPVYDAM--SSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKK 123

Query: 194 DILMR 198
           D+L  
Sbjct: 124 DVLRA 128

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 128

>gnl|CDD|239991 cd04619, CBS_pair_6, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 3/88 (3%)

Query: 4   RRVDALLLTDSNALLCGILTDKDIATRVIARELNLEET-PVSKVMTRNPTFVLSDTLAVE 62
             +D +++ D +  L G+LT  D+  R + R      T PV  VMTR         L  +
Sbjct: 22  PGIDLVVVCDPHGKLAGVLTKTDV-VRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLHD 80

Query: 63  ALQKMVQGKFRHLPVV-ENGEVIALLDI 89
             Q M Q   +++PVV EN   + +L+ 
Sbjct: 81  VWQVMKQRGLKNIPVVDENARPLGVLNA 108

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 8/90 (8%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARE--------LNLEETPVSKVMTRNPT 52
           M   R+  L + + +  L G+LT +D+    ++              + PV++VM  +  
Sbjct: 19  MREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVL 78

Query: 53  FVLSDTLAVEALQKMVQGKFRHLPVVENGE 82
            V  DT   EA + MV+ K   LPVV++  
Sbjct: 79  TVTPDTPLREAAEIMVENKIGCLPVVDDKG 108

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239986 cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 2/100 (2%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNLPADSTLV 211
            VVTI     +      +     ++  VV  + +  GI++  DI   ++      D  + 
Sbjct: 2   DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIR-EILFDPSLYDLVVA 60

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGD 251
             +MT  P     +  + DAL    D  +  LPVVD D  
Sbjct: 61  SDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPG 100

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239988 cd04615, CBS_pair_2, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 4/107 (3%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPR--GILTSKDILMRVISQNLPADST 209
            K   +     +  A  +M      +  V V++K R  GI+T  D+L   +      D  
Sbjct: 1   MKPSCVVLNTDIARAVAEMYTSGSRALPV-VDDKKRLVGIITRYDVLSYALESEELKD-A 58

Query: 210 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
            V +VM         +  I  A  +M +     LPV+D  G V  +V
Sbjct: 59  KVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIV 105

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 31/139 (22%), Positives = 49/139 (35%), Gaps = 35/139 (25%)

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALL---DIAKCLYDAIARMERAAEKGKAIAAAVEGV 117
             A + M+      LPV+E G+++ ++   DIA                  A+ +    V
Sbjct: 13  SHARRLMLDHDISRLPVIEGGKLVGIVTEKDIAD-----------------ALRSFRPLV 55

Query: 118 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSS 177
                               R+    +S I+     V+TI P  +V      MLE  +  
Sbjct: 56  RD-------------RHQERRIRNLPVSDIM--TRPVITIEPDTSVSDVASLMLENNIGG 100

Query: 178 AVVTVENKPRGILTSKDIL 196
             V  + K  GI+T  DIL
Sbjct: 101 LPVVDDGKLVGIVTRTDIL 119

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 35/160 (21%), Positives = 57/160 (35%), Gaps = 49/160 (30%)

Query: 43  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALL---DIAKCLYDAIAR 99
           V  +MT++   V  DT   +AL  M +     +PVV++G+++ ++   DI          
Sbjct: 1   VKDIMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDDGKLVGIITERDIL--------- 51

Query: 100 MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISP 159
             RA   G      V+ V                                    VVT+ P
Sbjct: 52  --RALAAGGKRLLPVKEVMTK--------------------------------PVVTVDP 77

Query: 160 TDTVLMATKKMLELRLSSAVVTVEN---KPRGILTSKDIL 196
              +  A + M+E      +  V++   K  GI+T  DIL
Sbjct: 78  DTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117

Length = 117

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 40/153 (26%), Positives = 62/153 (40%), Gaps = 38/153 (24%)

Query: 49  RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGK 108
           +NP  V  DT  +EAL+ M +   R LPVV+ G+++ ++           R  + A   K
Sbjct: 1   KNPITVTPDTSLMEALKLMKENSIRRLPVVDRGKLVGIV---------TDRDLKLASPSK 51

Query: 109 AIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTI---IPEKSKVVTISPTDTVLM 165
           A                        TL        LS I          +T+SP  +V  
Sbjct: 52  A-----------------------TTLDIWELYYLLSKIKVSDIMTRDPITVSPDASVEE 88

Query: 166 ATKKMLELRLSSAVVTVENKPR--GILTSKDIL 196
           A + MLE ++S   V V+++ R  GI+T  D+ 
Sbjct: 89  AAELMLERKISGLPV-VDDQGRLVGIITESDLF 120

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|240008 cd04637, CBS_pair_24, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 13/90 (14%)

Query: 9   LLLTDSNALLCGILTDKDIATRVIA----------RELNLEETPVSKVMTRNPTFVLSDT 58
           LL+ + N L  G+++D+D   + I+          ++L        ++MTR+P  V  DT
Sbjct: 27  LLVVEDNEL-VGVISDRDY-LKAISPFLGTAGETEKDLATLNRRAHQIMTRDPITVSPDT 84

Query: 59  LAVEALQKMVQGKFRHLPVV-ENGEVIALL 87
              EA + +++     LPVV ENG++I ++
Sbjct: 85  PVDEASKLLLENSISCLPVVDENGQLIGII 114

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239978 cd04605, CBS_pair_MET2_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 51/139 (36%)

Query: 62  EALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIARMERAAEKGKAIAAAVEGV 117
           EA + M++    HLPVV E+G ++ ++   DI+K    A+AR ++               
Sbjct: 15  EAAKLMIEENINHLPVVDEDGRLVGIVTSWDISK----AVARDKK--------------- 55

Query: 118 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSS 177
                           ++ + M R            V+T +P + + +A +KM    +S+
Sbjct: 56  ----------------SVEDIMTR-----------NVITATPDEPIDVAARKMERHNISA 88

Query: 178 -AVVTVENKPRGILTSKDI 195
             VV  EN+  GI+TS+DI
Sbjct: 89  LPVVDAENRVIGIITSEDI 107

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed

 Score = 41.7 bits (99), Expect = 4e-04
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 11/96 (11%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTF-VLSDTL 59
           MA   +  + + D N  L GI+T++D+  R           PVS+VMT+     V   T 
Sbjct: 113 MARYGISGVPVVDENGKLVGIITNRDV--RFETD----LSQPVSEVMTKERLVTVPEGTT 166

Query: 60  AVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAK 91
             EAL+ + + +   LPVV +NG +  L+   DI K
Sbjct: 167 LEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEK 202

Length = 486

>gnl|CDD|240009 cd04638, CBS_pair_25, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 9/112 (8%)

Query: 154 VVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTLVE 212
           VV ++   T     + + E ++S   VV    +  GI+T KD+L          +   + 
Sbjct: 3   VVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRN-------PEEEQLA 55

Query: 213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264
            +MT +P   + D  + +A  +M +     +PVVD DG +V +V V  I  A
Sbjct: 56  LLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVD-DGKLVGIVTVADIVRA 106

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 106

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 37.5 bits (88), Expect = 4e-04
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 154 VVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDIL 196
           VVT+SP  T+  A + + E  +    VV  E +  GI+T +DI+
Sbjct: 2   VVTVSPDTTLEEALELLRENGIRRLPVVDEEGRLVGIVTRRDII 45

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 14/66 (21%), Positives = 27/66 (40%)

Query: 217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSN 276
            +    + D  + +AL +M +     LPVVD DG +V +V    +  A      +   + 
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDPLVTV 60

Query: 277 NEAAST 282
            +  + 
Sbjct: 61  GDVMTR 66

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239973 cd04600, CBS_pair_HPP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 9/94 (9%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDI-------ATRVIARELNLEETP--VSKVMTRNP 51
           +   R+ AL + D +  L GI+T +D+         R +   L   + P  V  +M+   
Sbjct: 20  LRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPPV 79

Query: 52  TFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIA 85
             V  DT   E +  +  G   H+PVV+    + 
Sbjct: 80  VTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLV 113

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 38.8 bits (91), Expect = 7e-04
 Identities = 39/153 (25%), Positives = 59/153 (38%), Gaps = 37/153 (24%)

Query: 49  RNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIARMERAA 104
           R+   +   T   EAL+ M + K RHLPVV E G ++ ++   D+            R A
Sbjct: 1   RDVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDL------------RDA 48

Query: 105 EKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVL 164
                              S S   T  E     + +  +  I+     V+T+ P DTV 
Sbjct: 49  -------------------SPSPFTTLSEHELYLLLKMPVKEIM--TKDVITVHPLDTVE 87

Query: 165 MATKKMLELRLSSAVVTVENKPRGILTSKDILM 197
            A   M E R+    V  + +  GI+T  D+L 
Sbjct: 88  EAALLMREHRIGCLPVVEDGRLVGIITETDLLR 120

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 36.3 bits (85), Expect = 9e-04
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 218 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIHI 261
           +    + DT + +AL ++ +     LPVVD +G +V +V   D+I  
Sbjct: 1   DVVTVSPDTTLEEALELLRENGIRRLPVVDEEGRLVGIVTRRDIIKA 47

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|239972 cd04599, CBS_pair_GGDEF_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 17/46 (36%), Positives = 24/46 (52%)

Query: 151 KSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196
             +VVTISP  ++L A + M E ++    V  E K  GI+T   I 
Sbjct: 58  TREVVTISPEASLLEAKRLMEEKKIERLPVLRERKLVGIITKGTIA 103

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 105

>gnl|CDD|182814 PRK10892, PRK10892, D-arabinose 5-phosphate isomerase; Provisional

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 13  DSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKF 72
           D N  + GI TD D+  RV    ++L +  ++ VMT     V    LAV+AL  M     
Sbjct: 242 DDNMKIEGIFTDGDL-RRVFDMGIDLRQASIADVMTPGGIRVRPGILAVDALNLMQSRHI 300

Query: 73  RHLPVVENGEVIALL 87
             + V +   ++ +L
Sbjct: 301 TSVLVADGDHLLGVL 315

Length = 326

>gnl|CDD|239966 cd04593, CBS_pair_EriC_assoc_bac_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 1/81 (1%)

Query: 1  MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
          +   +  + L+ D +  + GI+T  D+  R +  +   E + V +V T     V  D   
Sbjct: 19 LIESKHGSALVVDRDGGVVGIITLPDL-LRALEADEAGEPSAVDEVATPPLLTVHPDEPL 77

Query: 61 VEALQKMVQGKFRHLPVVENG 81
            AL +M     R LPVV+ G
Sbjct: 78 AHALDRMASRGLRQLPVVDRG 98

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in CLC chloride channel family members have been associated with classic Bartter syndrome, Osteopetrosis, Dent's disease, idiopathic generalized epilepsy, and myotonia. Length = 115

>gnl|CDD|240014 cd04643, CBS_pair_30, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.9 bits (89), Expect = 0.001
 Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 7/104 (6%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNL----PA 206
            +V  +  T+T+  A   + +   S+  V+  E K  G ++  DIL ++           
Sbjct: 1   EEVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLERL 60

Query: 207 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDG 250
               V  VM  +      D  I + LH++ D  F  LPVVD DG
Sbjct: 61  VDLKVIDVMNTDVPVIIDDADIEEILHLLIDQPF--LPVVDDDG 102

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 116

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 37.5 bits (87), Expect = 0.002
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRD 249
           V+ +MT +      DT + DAL +M +     +PVVD  
Sbjct: 1   VKDIMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDDG 39

Length = 117

>gnl|CDD|239972 cd04599, CBS_pair_GGDEF_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVE 212
             +TI P D+V  A + M + R+    V  + K  GI+TS+D + R     L AD+ +  
Sbjct: 2   DPITIDPLDSVGRAARLMEKHRIGGLPVVEDGKLVGIITSRD-VRRAHPNRLVADA-MTR 59

Query: 213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRD 249
           +V+T +PE +     +++A  +M + K   LPV+   
Sbjct: 60  EVVTISPEAS-----LLEAKRLMEEKKIERLPVLRER 91

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 105

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 29/150 (19%), Positives = 49/150 (32%), Gaps = 43/150 (28%)

Query: 49  RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGK 108
            +   V  D    E L  M   + R  PVV++G ++ ++ +                   
Sbjct: 1   PDVVTVPVDLTVDEVLALMFGERHRGYPVVDDGRLVGIVTL------------------- 41

Query: 109 AIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATK 168
              A +  V                T+                   VT SP +T+  A K
Sbjct: 42  ---ADIRRVP---------AEGREATVLVGDVM---------TRDPVTASPDETLRDALK 80

Query: 169 KMLELRLSSAVVTVENKPR--GILTSKDIL 196
           +M E  +    V V++  R  GI++  D+L
Sbjct: 81  RMAERDIGRLPV-VDDSGRLVGIVSRSDLL 109

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 35.2 bits (82), Expect = 0.003
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)

Query: 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLY 94
          +   V  DT   EAL+ + +   R LPVV E G ++ ++   DI K L 
Sbjct: 1  DVVTVSPDTTLEEALELLRENGIRRLPVVDEEGRLVGIVTRRDIIKALA 49

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|225148 COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 13/87 (14%)

Query: 179 VVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDG 238
           VV  + K  G+++ +D+L             L++ +M  +      D    +   +    
Sbjct: 173 VVDEKGKLLGVVSLRDLLTA-------EPDELLKDLMEDDVVSVLADDDQEEVARLFEKY 225

Query: 239 KFLHLPVVDRDG------DVVDVVDVI 259
             L +PVVD D        + D++DVI
Sbjct: 226 DLLAVPVVDEDNRLIGIITIDDIIDVI 252

Length = 451

>gnl|CDD|225457 COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

 Score = 38.9 bits (91), Expect = 0.004
 Identities = 34/103 (33%), Positives = 43/103 (41%), Gaps = 8/103 (7%)

Query: 109 AIAAAVEGVEKHWGTSISGPNTFIET---LRERMFRPSLSTIIPEK----SKVVTISPTD 161
           A     EGV        SGP   I T   LR R+     S          S V+++   D
Sbjct: 172 ARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSKTQKVSEVMTSPVISVDRGD 231

Query: 162 TVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNL 204
            +  A   ML  R+    VT + +P GILT  DIL R+ SQN 
Sbjct: 232 FLFEAMLMMLRNRIKHLPVTEDGQPLGILTLTDIL-RLFSQNS 273

Length = 610

>gnl|CDD|239975 cd04602, CBS_pair_IMPDH_2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 36.4 bits (85), Expect = 0.004
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 11/79 (13%)

Query: 13  DSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSD---TLAVEALQKMVQ 69
            S   L GI+T +DI        L   ETP+S+VMT     V++    TL  EA + + +
Sbjct: 35  KSGGKLLGIVTSRDI------DFLTDSETPLSEVMTPREVLVVAPTGITLE-EANEILRE 87

Query: 70  GKFRHLPVV-ENGEVIALL 87
            K   LP+V ++GE++AL+
Sbjct: 88  SKKGKLPIVNDDGELVALV 106

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 114

>gnl|CDD|240005 cd04634, CBS_pair_21, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.0 bits (86), Expect = 0.004
 Identities = 14/51 (27%), Positives = 28/51 (54%)

Query: 37  NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALL 87
           +  +  V  +MT+    +  D    +A + MV+ K + LPVVE+G ++ ++
Sbjct: 85  DAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVEDGRLVGIV 135

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 143

>gnl|CDD|181127 PRK07807, PRK07807, inosine 5-monophosphate dehydrogenase; Validated

 Score = 38.7 bits (91), Expect = 0.004
 Identities = 34/105 (32%), Positives = 47/105 (44%), Gaps = 12/105 (11%)

Query: 155 VTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADS-TLV 211
           VT+SP DTV  A   +L  R   AVV V  E +P G++T  D            D  T V
Sbjct: 100 VTLSPDDTVGDALA-LLPKRAHGAVVVVDEEGRPVGVVTEADCAGV--------DRFTQV 150

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
             VM+ +       T   +A  ++   +    PVVD DG +V V+
Sbjct: 151 RDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVL 195

Length = 479

>gnl|CDD|226594 COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 8/103 (7%)

Query: 155 VTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNLPADSTLVEK 213
             +  TDTV      + +   S   VV    K  G++T +D+L +         ST +EK
Sbjct: 201 SYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDK-------KPSTTIEK 253

Query: 214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
           VMT NP      T +     +M       LPVVD +  ++ ++
Sbjct: 254 VMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGII 296

Length = 432

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	369
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.94
PRK11573	413	hypothetical protein; Provisional	99.94
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.94
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	99.91
COG1253	429	TlyC Hemolysins and related proteins containing CB	99.91
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	99.88
COG2524	294	Predicted transcriptional regulator, contains C-te	99.83
COG2524	294	Predicted transcriptional regulator, contains C-te	99.78
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.75
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.73
COG3620	187	Predicted transcriptional regulator with C-termina	99.71
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.71
COG3620	187	Predicted transcriptional regulator with C-termina	99.69
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.68
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.68
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.67
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.66
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.66
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.66
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.66
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.65
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.64
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.64
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.63
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.63
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.63
COG2905	610	Predicted signal-transduction protein containing c	99.63
COG4109	432	Predicted transcriptional regulator containing CBS	99.62
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.62
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.62
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.61
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.61
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.61
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.61
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.61
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.6
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.6
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.6
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.6
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.59
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.59
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.59
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.59
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.59
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.59
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.58
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.58
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.58
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.58
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.58
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.58
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.58
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.58
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.58
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.58
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.57
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.57
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.57
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.57
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.57
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.57
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.57
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.56
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.56
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.56
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.56
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.56
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.56
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.56
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.55
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.55
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.55
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.54
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.54
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.54
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.53
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.53
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.53
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.53
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.53
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.53
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.52
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.51
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.51
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.51
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.5
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.5
COG0517	117	FOG: CBS domain [General function prediction only]	99.5
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.5
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.5
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.49
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.49
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.49
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.48
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.48
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.47
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.46
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.46
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.46
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.46
COG2905	610	Predicted signal-transduction protein containing c	99.46
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.46
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.46
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.46
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.45
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.44
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.43
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.43
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.42
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.42
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.42
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.41
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.39
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.39
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.39
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.39
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.39
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.39
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.38
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.38
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.38
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.38
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.38
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.38
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.38
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.38
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.37
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.37
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.37
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.37
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.36
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.36
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.36
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.36
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.36
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.36
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.36
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.35
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.35
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.35
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.34
PRK11573	413	hypothetical protein; Provisional	99.34
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.34
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.34
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.34
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.34
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.34
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.33
COG4109	432	Predicted transcriptional regulator containing CBS	99.33
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.33
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.33
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.33
COG0517	117	FOG: CBS domain [General function prediction only]	99.33
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.33
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.32
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.32
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.32
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.32
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.32
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.32
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.31
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.31
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.3
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.3
COG1253	429	TlyC Hemolysins and related proteins containing CB	99.3
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.3
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.3
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.29
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.29
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.28
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	99.27
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.27
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.26
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.26
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.24
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.24
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.22
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	99.22
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.22
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	99.2
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.19
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.16
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	99.14
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.05
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	99.0
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	98.99
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.98
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.95
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	98.83
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	98.82
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	98.62
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.6
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.57
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	98.37
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.35
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.31
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.17
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	98.07
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	97.95
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	97.74
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	97.65
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.61
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	97.3
KOG2118	498	consensus Predicted membrane protein, contains two	97.26
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	97.23
PF03471	81	CorC_HlyC: Transporter associated domain; InterPro	96.88
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	96.25
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	95.52
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	95.48
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	91.24
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	88.57

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.94  E-value=9.8e-27  Score=208.81  Aligned_cols=196  Identities=15%  Similarity=0.183  Sum_probs=162.7

Q ss_pred             hCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-C-CEEEEEeehHHHHHHHHhcCCCccccccccccc
Q 017536          139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMT  216 (369)
Q Consensus       139 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~-~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~  216 (369)
                      +...+++++|+|+.++++++++.++.++++.+.+++++++||++ + ++++|+++.+|++ ........  ...+.++|.
T Consensus        64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll-~~~~~~~~--~~~l~~l~r  140 (292)
T PRK15094         64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLL-PFMRSDAE--AFSMDKVLR  140 (292)
T ss_pred             cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHH-hHhhccCC--cCCHHHHcC
Confidence            56778999999988999999999999999999999999999998 4 7899999999997 44332211  235788884


Q ss_pred             cCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHhcCCCCCchH-HH-----------HHHH
Q 017536          217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNE-AA-----------STMM  284 (369)
Q Consensus       217 ~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~~~~~~~~~~-~~-----------~~~~  284 (369)
                       +++++++++++.++++.|++++.+.+||+|++|.++|+||++||+++++|++.++.+...+ ..           ..+.
T Consensus       141 -~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei~de~d~~~~~~i~~~~~~~~~v~G~~~  219 (292)
T PRK15094        141 -QAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQLSRHTWTVRALAS  219 (292)
T ss_pred             -CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCCccccccccccccEEeCCCeEEEEeccC
Confidence             6679999999999999999999999999999999999999999999999999887763321 01           1112


Q ss_pred             HHHHHHhhcCCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEEEcCCCce
Q 017536          285 QKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLM  346 (369)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g~~  346 (369)
                      -+..++.+....++++|+|++|++...++++|+.|+.+.+.++.        |+|.+++|+-
T Consensus       220 l~dl~~~l~~~l~~~~~~Tl~G~i~~~l~~iP~~Gd~i~~~~~~--------f~V~~~~~~r  273 (292)
T PRK15094        220 IEDFNEAFGTHFSDEEVDTIGGLVMQAFGHLPARGETIDIDGYQ--------FKVAMADSRR  273 (292)
T ss_pred             HHHHHHHhCCCCCCCCCccHHHHHHHHhCcCCCCCCEEEECCEE--------EEEEEccCCe
Confidence            22234445555566689999999999999999999999999999        9999997654

>PRK11573 hypothetical protein; Provisional

Probab=99.94  E-value=3.2e-26  Score=214.99  Aligned_cols=203  Identities=13%  Similarity=0.125  Sum_probs=165.7

Q ss_pred             hCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe--CCEEEEEeehHHHHHHHHhcCCCccccccccccc
Q 017536          139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT  216 (369)
Q Consensus       139 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d--~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~  216 (369)
                      +...+++++|+|+.++.+++.++++.++++.+.+++++++||++  .++++|+++.+|++ .....+.......+.+++ 
T Consensus       184 l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll-~~~~~~~~~~~~~l~~~~-  261 (413)
T PRK11573        184 LEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAY-RLMTEKKEFTKENMLRAA-  261 (413)
T ss_pred             cCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHH-HHhhccCcCCHHHHHhhc-
Confidence            56788999999999999999999999999999999999999998  48999999999998 443322211122344565 


Q ss_pred             cCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHhcCCCCCch-HHH-----------HHHH
Q 017536          217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNN-EAA-----------STMM  284 (369)
Q Consensus       217 ~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~~~~~~~~~-~~~-----------~~~~  284 (369)
                      +++.+|++++++.++++.|++++.|.+.|+||+|...|+||.+||+++++|++.++.+... ...           +.+.
T Consensus       262 r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei~de~d~~~~~~i~~~~~~~~~v~G~~~  341 (413)
T PRK11573        262 DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQNDGSVIIDGTAN  341 (413)
T ss_pred             cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCCCcccCcccccceEEecCCEEEEEeeeE
Confidence            6899999999999999999999999999999999999999999999999999998876421 101           1122


Q ss_pred             HHHHHHhhcCCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEEEcCCC-ceEEeec
Q 017536          285 QKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKG-LMHRFTC  351 (369)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~  351 (369)
                      -+..+..+.+..++++|+|++|++...+|++|+.|+.+.+.++.        |+|.+++| ++.|.++
T Consensus       342 l~d~~~~l~~~l~~~~~~Tl~G~i~~~lg~iP~~Ge~~~~~~~~--------f~V~~~~~~rI~~v~v  401 (413)
T PRK11573        342 VREINKAFNWHLPEDDARTVNGVILEALEEIPVAGTRVRIGEYD--------IDILDVQDNMIKQVKV  401 (413)
T ss_pred             HHHHHHHhCCCCCCCCCeeHHHHHHHHhCcCCCCCCEEEECCEE--------EEEEEecCCeEEEEEE
Confidence            23335555556666689999999999999999999999999999        99999964 5554444

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.94  E-value=2.2e-26  Score=216.20  Aligned_cols=194  Identities=13%  Similarity=0.138  Sum_probs=160.7

Q ss_pred             hCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe--CCEEEEEeehHHHHHHHHhcCCCccccccccccc
Q 017536          139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT  216 (369)
Q Consensus       139 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d--~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~  216 (369)
                      +...+++++|+|+.++++++.++++.++++.+.+++++++||++  .++++|+++.+|++ .....    ...++.++| 
T Consensus       188 l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll-~~~~~----~~~~l~~~~-  261 (408)
T TIGR03520       188 FGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLL-PHLNK----KNFDWQSLL-  261 (408)
T ss_pred             cCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHH-hHhcc----CCCCHHHHc-
Confidence            45788999999999999999999999999999999999999998  36899999999998 44332    134577888 


Q ss_pred             cCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHhcCCCCCchHHH-----------HHHHH
Q 017536          217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAA-----------STMMQ  285 (369)
Q Consensus       217 ~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~~~~~~~~~~~~-----------~~~~~  285 (369)
                      +++.++++++++.++++.|++++.+.++|+||+|.++|+||.+||+++++|++.++.+...+..           ..+.-
T Consensus       262 ~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivgei~de~d~~~~~i~~~~~~~~~v~G~~~l  341 (408)
T TIGR03520       262 REPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDISDEFDDEDLIYSKIDDNNYVFEGKTSL  341 (408)
T ss_pred             CCCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCCCCCcCCcCccceEEeCCCeEEEEeccCH
Confidence            5789999999999999999999999999999999999999999999999999988765332211           11222


Q ss_pred             HHHHHhhcCCC---C--CCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEEEcCCCce
Q 017536          286 KFWDSAMALSP---N--DDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLM  346 (369)
Q Consensus       286 ~~~~~~~~~~~---~--~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g~~  346 (369)
                      +..++.+..+.   +  +++++|++|++...++++|+.||.+.+.++.        |+|.+++++-
T Consensus       342 ~~l~~~l~~~~~~~~~~~~~~~Tl~G~i~~~l~~iP~~G~~~~~~~~~--------f~V~~~~~~r  399 (408)
T TIGR03520       342 KDFYKILKLEEDMFDEVKGEAETLAGFLLEISGGFPKKGEKITFENFE--------FTIEAMDKKR  399 (408)
T ss_pred             HHHHHHhCCCccccCCcCCCCccHHHHHHHHhCcCCCCCCEEEECCEE--------EEEEEccCCe
Confidence            22344444442   1  3468999999999999999999999999999        9999997553

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=99.91  E-value=2.3e-24  Score=177.67  Aligned_cols=203  Identities=14%  Similarity=0.161  Sum_probs=171.3

Q ss_pred             CCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe--CCEEEEEeehHHHHHHHHhcCCCcccccccccccc
Q 017536          140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP  217 (369)
Q Consensus       140 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d--~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~  217 (369)
                      ...+++++|.||....++..+.++.+++..+.+..++++||+.  .+.+.||+..+|++ +++.....  ...+.++. +
T Consensus        65 adl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL-~~~~~~~~--~F~i~~lL-R  140 (293)
T COG4535          65 ADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLL-PFMRSDAE--PFDIKELL-R  140 (293)
T ss_pred             HHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHH-HHhcCCcc--cccHHHhc-c
Confidence            3456999999999999999999999999999999999999997  67899999999998 66554432  34677766 8


Q ss_pred             CCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHhcCCCCCchHHH-HHHHHH----------
Q 017536          218 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAA-STMMQK----------  286 (369)
Q Consensus       218 ~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~~~~~~~~~~~~-~~~~~~----------  286 (369)
                      |.++||++..+...++-|+.++.|++.|+||+|.+.|+||.+||++.++|.+.++.+..++.- ..+...          
T Consensus       141 Pav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGdIEDE~Deee~~dI~~ls~~~~~VrALT~I  220 (293)
T COG4535         141 PAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGDIEDEYDEEEDADIRQLSRHTWRVRALTEI  220 (293)
T ss_pred             cceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhcccccccchhhhhhhHhhcCCceEEEecccH
Confidence            999999999999999999999999999999999999999999999999999999988765421 111111          


Q ss_pred             -HHHHhhcCCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEEEcCC-CceEEeecCCC
Q 017536          287 -FWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNK-GLMHRFTCGML  354 (369)
Q Consensus       287 -~~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~-g~~~~~~~g~~  354 (369)
                       .++..++-...+++++|.+|+++...|+.|..|+.+...++.        |+|...| +++|...+-+.
T Consensus       221 edFNe~F~t~FsDeevDTIGGLVm~afGhLP~RGE~i~i~~~~--------FkV~~ADsRrv~~l~vt~~  282 (293)
T COG4535         221 EDFNEAFGTHFSDEEVDTIGGLVMQAFGHLPARGEKIDIGGYQ--------FKVARADSRRVIQLHVTVP  282 (293)
T ss_pred             HHHHHHhcCCCChhhhhhhhHHHHHHhccCCCCCCEEEEcceE--------EEEeecccceEEEEEEecC
Confidence             235555556677889999999999999999999999999999        9998874 77776655443

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=99.91  E-value=1.4e-23  Score=199.06  Aligned_cols=202  Identities=15%  Similarity=0.174  Sum_probs=164.6

Q ss_pred             HhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe--CCEEEEEeehHHHHHHHHhcCCCcccccccccc
Q 017536          138 RMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVM  215 (369)
Q Consensus       138 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d--~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m  215 (369)
                      .+..++++++|+||.++.+++.+.+++++.+.+.+++++++||++  .++++|+++.+|++........   .......+
T Consensus       202 ~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~---~~~~~~~~  278 (429)
T COG1253         202 DLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS---DLDLRVLV  278 (429)
T ss_pred             ccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc---ccchhhcc
Confidence            356789999999999999999999999999999999999999998  6889999999999954443321   01111222


Q ss_pred             ccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHhcCCCCCch--HH----------HHHH
Q 017536          216 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNN--EA----------ASTM  283 (369)
Q Consensus       216 ~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~~~~~~~~~--~~----------~~~~  283 (369)
                       ++++++++++++.++++.|++++.|.+.|+||+|.+.|+||.+||+++++|++.++++...  ..          ...+
T Consensus       279 -~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei~de~d~~~~~~~~~~~~~~~~v~G~~  357 (429)
T COG1253         279 -RPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIPDEHDEDEEEDIIQRDDDGWLVDGRV  357 (429)
T ss_pred             -cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCCcCcccccccccceEecCCcEEEeccc
Confidence             4899999999999999999999999999999999999999999999999999998887532  11          1222


Q ss_pred             HHHHHHHhhcCC-CCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEEEcCC-CceEEeec
Q 017536          284 MQKFWDSAMALS-PNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNK-GLMHRFTC  351 (369)
Q Consensus       284 ~~~~~~~~~~~~-~~~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~-g~~~~~~~  351 (369)
                      .-+..++.+... +++++|+|++|++...++++|..|+.+.++++.        |+|.+++ .++.|.++
T Consensus       358 ~l~e~~~~l~~~~~~~~~~~Ti~G~v~~~lg~iP~~g~~~~~~~~~--------~~V~~~~~~rI~~v~i  419 (429)
T COG1253         358 PLEELEELLGIDLDEEEDYDTIAGLVLSLLGRIPKVGESVVIGGLR--------FEVLDMDGRRIDKVLI  419 (429)
T ss_pred             cHHHHHHHhCCCCcccCCcccHHHHHHHHhCcCCCCCCEEEEcCCe--------EEEEEccCCcEEEEEE
Confidence            223335555555 334478999999999999999999999999999        9999996 45655544

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=99.88  E-value=1.6e-22  Score=177.96  Aligned_cols=203  Identities=14%  Similarity=0.156  Sum_probs=170.5

Q ss_pred             hCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe--CCEEEEEeehHHHHHHHHhcCCCccccccccccc
Q 017536          139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT  216 (369)
Q Consensus       139 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d--~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~  216 (369)
                      +.+.+|+|+|.||.++..++.+++.+++++.+....+.++|++.  -++++|+++.+|++ +++.+........+..+. 
T Consensus       197 Le~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~ll-r~l~e~~~~~k~d~~~~a-  274 (423)
T COG4536         197 LENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLL-RLLNEKNEFTKEDILRAA-  274 (423)
T ss_pred             cccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHH-HHhhccCcccHhHHHHHh-
Confidence            34678999999999999999999999999999999999999997  46799999999998 666554433233333333 


Q ss_pred             cCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHhcCCCCCchHHHHH-----------HHH
Q 017536          217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAAST-----------MMQ  285 (369)
Q Consensus       217 ~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~~~~~~~~~~~~~~-----------~~~  285 (369)
                      .+|+++|+++++.+-+..|++++-|...||||+|.+.|+||.+||+++++|++.++++...+....           ..-
T Consensus       275 ~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVGdftde~d~~~~ev~~q~dgs~iidGs~~i  354 (423)
T COG4536         275 DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVGDFTDEHDTLAKEVIPQSDGSFIIDGSANV  354 (423)
T ss_pred             cCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhccccccCcccchhhcccCCCcEEEeCCCcH
Confidence            689999999999999999999999999999999999999999999999999998877766542222           233


Q ss_pred             HHHHHhhcCCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEEEcC-CCceEEeec
Q 017536          286 KFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDN-KGLMHRFTC  351 (369)
Q Consensus       286 ~~~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~-~g~~~~~~~  351 (369)
                      ...++.+.+..|+++..|..|++.+.++++|+.|..+..-++.        |+|.+. ++++.+-++
T Consensus       355 RdlNr~l~W~Lp~e~a~TinGLvle~le~IP~~~~~~~i~~~~--------~~Il~~~~N~I~~vri  413 (423)
T COG4536         355 RDLNRALDWNLPDEDARTINGLVLEELEEIPEEGQAVRIGGYR--------IDILKVQENRIKQVKI  413 (423)
T ss_pred             HHHHHhcCCCCCCCcchhHHHHHHHHHHhCCCCCeEEEEcCEE--------EEEEehhhcceeeEEE
Confidence            3458889999999999999999999999999999999999998        998887 455654443

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.83  E-value=5.2e-20  Score=154.17  Aligned_cols=123  Identities=25%  Similarity=0.329  Sum_probs=113.2

Q ss_pred             CCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCC
Q 017536          140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  219 (369)
Q Consensus       140 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~  219 (369)
                      .+.++.++|+  ++++++.+++|+.++.+.|.++++++.||+|+++++|++|..|+. ..++++.  ...+|+++|.+++
T Consensus       170 Pk~~V~~~~s--~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~dk~vGiit~~dI~-~aia~g~--~~~kV~~~M~k~v  244 (294)
T COG2524         170 PKEKVKNLMS--KKLITVRPDDTLREAAKLFYEKGIRGAPVVDDDKIVGIITLSDIA-KAIANGN--LDAKVSDYMRKNV  244 (294)
T ss_pred             Ccchhhhhcc--CCceEecCCccHHHHHHHHHHcCccCCceecCCceEEEEEHHHHH-HHHHcCC--ccccHHHHhccCC
Confidence            4567889998  789999999999999999999999999999988999999999997 6666653  2689999999999


Q ss_pred             ceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHH
Q 017536          220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (369)
Q Consensus       220 ~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~  267 (369)
                      +++.+++.+.||+++|..+++.+|.|+|.+|+++|+||++||++.+.+
T Consensus       245 itI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia~  292 (294)
T COG2524         245 ITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIAG  292 (294)
T ss_pred             ceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhhc
Confidence            999999999999999999999999999999999999999999987653

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.78  E-value=1.2e-18  Score=145.95  Aligned_cols=123  Identities=22%  Similarity=0.354  Sum_probs=110.2

Q ss_pred             CCCcccccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 017536           36 LNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE  115 (369)
Q Consensus        36 ~~~~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~  115 (369)
                      ..+.+.+|.++|+++++++++++|+.+|.++|.++++++.||+|+++++|+++..|+..++...                
T Consensus       167 ~siPk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~dk~vGiit~~dI~~aia~g----------------  230 (294)
T COG2524         167 VSIPKEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDDKIVGIITLSDIAKAIANG----------------  230 (294)
T ss_pred             eecCcchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecCCceEEEEEHHHHHHHHHcC----------------
Confidence            3566889999999999999999999999999999999999999988999999999987763311                


Q ss_pred             hHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHH
Q 017536          116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKD  194 (369)
Q Consensus       116 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~d  194 (369)
                                             -...+|+++|.  +++++++.++.+.||+++|..+++.++.|+| +|+++|+||+.|
T Consensus       231 -----------------------~~~~kV~~~M~--k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTD  285 (294)
T COG2524         231 -----------------------NLDAKVSDYMR--KNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTD  285 (294)
T ss_pred             -----------------------CccccHHHHhc--cCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHH
Confidence                                   22356889998  7899999999999999999999999999999 999999999999


Q ss_pred             HHHHH
Q 017536          195 ILMRV  199 (369)
Q Consensus       195 ll~~~  199 (369)
                      ++.++
T Consensus       286 IL~~i  290 (294)
T COG2524         286 ILTRI  290 (294)
T ss_pred             HHHHh
Confidence            98444

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.75  E-value=1e-16  Score=148.42  Aligned_cols=238  Identities=20%  Similarity=0.226  Sum_probs=173.1

Q ss_pred             ccCCcCEEEEEcCC-CcEEEEEeHHHHHHHHHhccCC------Ccc---------cccccc----cccCCeEEeCCCcHH
Q 017536            2 AARRVDALLLTDSN-ALLCGILTDKDIATRVIARELN------LEE---------TPVSKV----MTRNPTFVLSDTLAV   61 (369)
Q Consensus         2 ~~~~~~~~~V~d~~-~~~~Givt~~Di~~~~~~~~~~------~~~---------~~v~di----m~~~~i~v~~~~~l~   61 (369)
                      ..+..++.|++|.. .++.|++|..|+...+......      ...         .++..+    -.++++++.+..++.
T Consensus        95 ~~~~~~~~p~~~~~~~~~~g~~~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~s~l  174 (381)
T KOG1764|consen   95 VQNGVRAAPLWDSKKQQFVGMLTITDFITVLLRYYKSKSSLDNIEVLEDSQLSKRREVECLLKETLKPPFVSISPESSLL  174 (381)
T ss_pred             HhhceeeeccccCccceeEEEEEHHHHHHHHHHhhccCCcHHHHhhhhhhhccccchhhhhhccccCCCceeecCcHHHH
Confidence            35678899999944 5799999999998554432111      000         111111    123338899999999


Q ss_pred             HHHHHHHhCCCeEeeEee--CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChhhHHHHHHHHh
Q 017536           62 EALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERM  139 (369)
Q Consensus        62 ~a~~~m~~~~~~~lpVvd--~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  139 (369)
                      ++...+.+++++++||.|  .++++.+++.+.+++.+........                               ...+
T Consensus       175 ~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~-------------------------------~~~~  223 (381)
T KOG1764|consen  175 DAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLP-------------------------------LPSL  223 (381)
T ss_pred             HHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccc-------------------------------cHHH
Confidence            999999999999999998  4899999999999987543322110                               0011


Q ss_pred             CCCCccccccCC-CceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhc-CCCccccc-ccccc
Q 017536          140 FRPSLSTIIPEK-SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQ-NLPADSTL-VEKVM  215 (369)
Q Consensus       140 ~~~~v~~im~~~-~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~-~~~~~~~~-v~~~m  215 (369)
                      ...++.+.-... .++..+..++++.+|++.|.+.+++.+||++ .|+.+|.++..|+. ..... ........ +....
T Consensus       224 l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~-~l~~~~~~~~~~~~~l~~~~  302 (381)
T KOG1764|consen  224 LSKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVI-HLAREGTYNNLDLSCLSEAL  302 (381)
T ss_pred             hhCCHHHhCcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhh-hhhhcCccCccchhHHHHHh
Confidence            122222222211 3588999999999999999999999999999 77779999999996 44433 22222222 22222


Q ss_pred             ------ccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHhcC
Q 017536          216 ------TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGN  271 (369)
Q Consensus       216 ------~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~~~  271 (369)
                            ..+++++.++.++.++++.|..+++|+++|||++|.++|+||..|++.+++..-..
T Consensus       303 ~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~p~~  364 (381)
T KOG1764|consen  303 SHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLTPSG  364 (381)
T ss_pred             hhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhCccC
Confidence                  13569999999999999999999999999999999999999999999988765543

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.73  E-value=4.3e-17  Score=160.40  Aligned_cols=217  Identities=20%  Similarity=0.229  Sum_probs=151.8

Q ss_pred             ccccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHH
Q 017536           40 ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE  118 (369)
Q Consensus        40 ~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~  118 (369)
                      ..+++++|.++++++++++++.+|++.|.+++++.+||+| +|+++|+++..|+...........  ........+..+.
T Consensus        67 ~~~V~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~~~~~~--~~~~~~~t~~~i~  144 (546)
T PRK14869         67 KPQVRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDILDPE--ILSKSPTSLENII  144 (546)
T ss_pred             CCcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhhcchh--hhhhcCCCHHHHH
Confidence            3689999999999999999999999999999999999999 699999999999988766433210  0111122222333


Q ss_pred             HhcCCCCCChhhHHHH-HHH----HhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCC---------
Q 017536          119 KHWGTSISGPNTFIET-LRE----RMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVEN---------  184 (369)
Q Consensus       119 ~~~g~~~~~~~~~~~~-~~~----~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~---------  184 (369)
                      +.++..+......... ...    .+....+.+.|.+ .+++++..+..+.   ..+.+.+.++++|+.+.         
T Consensus       145 ~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~-~~lvi~gdr~d~~---~~ai~~~~~~lIlt~g~~~~~~v~~l  220 (546)
T PRK14869        145 RTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEE-GDIVIVGDREDIQ---LAAIEAGVRLLIITGGAPVSEDVLEL  220 (546)
T ss_pred             HhcCcEEEecCcccccccccEEEEEcCHHHHHHhccC-CCEEEEcCcHHHH---HHHHHcCCCEEEECCCCCCCHHHHHH
Confidence            3333222211100000 000    0000112233443 3466666555443   35688899999888632         


Q ss_pred             ----EEEEEeehHHHHHHHHhcCCCccccccccccc-cCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHH
Q 017536          185 ----KPRGILTSKDILMRVISQNLPADSTLVEKVMT-PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVI  259 (369)
Q Consensus       185 ----~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~-~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~  259 (369)
                          .+.++.|..|.+ .....-.  ...+++++|+ ++++++++++++.++.+.|.+++.+.+||+|++|+++|+||..
T Consensus       221 a~~~~i~ii~t~~dt~-~t~~~l~--~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~  297 (546)
T PRK14869        221 AKENGVTVISTPYDTF-TTARLIN--QSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRY  297 (546)
T ss_pred             HHhCCCeEEEecccHH-HHHHHhh--cCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHH
Confidence                378899999987 4333222  2678999999 8999999999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 017536          260 HITHAA  265 (369)
Q Consensus       260 di~~~~  265 (369)
                      |+++..
T Consensus       298 dl~~~~  303 (546)
T PRK14869        298 HLLSPV  303 (546)
T ss_pred             Hhhccc
Confidence            999753

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.71  E-value=9.9e-17  Score=124.64  Aligned_cols=122  Identities=18%  Similarity=0.300  Sum_probs=104.0

Q ss_pred             cccccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHH
Q 017536           39 EETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE  118 (369)
Q Consensus        39 ~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~  118 (369)
                      ...+++.+|+++++++.|++++.+++++|.+++++.+||+++++++|-++..++.+..++.++                 
T Consensus        63 ~~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~k~VGsItE~~iv~~~le~~e-----------------  125 (187)
T COG3620          63 TRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEEDKVVGSITENDIVRALLEGME-----------------  125 (187)
T ss_pred             ceEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeCCeeeeeecHHHHHHHHhcccc-----------------
Confidence            467889999999999999999999999999999999999999999999999999877543321                 


Q ss_pred             HhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHH
Q 017536          119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMR  198 (369)
Q Consensus       119 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~  198 (369)
                                         .....+++++|.  ..+++++++.++.....++..+  .++.|+++|+++||||..|++ +
T Consensus       126 -------------------~i~~~~vr~vM~--e~fP~Vs~~~~l~vI~~LL~~~--~AVlV~e~G~~vGIITk~DI~-k  181 (187)
T COG3620         126 -------------------SIRSLRVREVMG--EPFPTVSPDESLNVISQLLEEH--PAVLVVENGKVVGIITKADIM-K  181 (187)
T ss_pred             -------------------chhhhhHHHHhc--CCCCcCCCCCCHHHHHHHHhhC--CeEEEEeCCceEEEEeHHHHH-H
Confidence                               133456888998  6799999999998888777654  568888999999999999998 6


Q ss_pred             HHh
Q 017536          199 VIS  201 (369)
Q Consensus       199 ~~~  201 (369)
                      +++
T Consensus       182 ~~~  184 (187)
T COG3620         182 LLA  184 (187)
T ss_pred             HHh
Confidence            554

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.71  E-value=1.2e-16  Score=136.60  Aligned_cols=132  Identities=26%  Similarity=0.305  Sum_probs=114.2

Q ss_pred             HHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHH----hcCCCccccc
Q 017536          136 RERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVI----SQNLPADSTL  210 (369)
Q Consensus       136 ~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~----~~~~~~~~~~  210 (369)
                      ...+...+..++|+  ++++++++++++.+|.++|.+++++.+||+| +.+++|++|.+|++..+-    +.-.......
T Consensus       239 ~R~~~~LtcadIMS--rdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~  316 (382)
T COG3448         239 RRRMGELTCADIMS--RDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLRFLRPPT  316 (382)
T ss_pred             HHHhccccHHHhcC--ccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcchHHHhhccCCCc
Confidence            33566677899999  7999999999999999999999999999999 889999999999984211    1111123567


Q ss_pred             cccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHh
Q 017536          211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  269 (369)
Q Consensus       211 v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~  269 (369)
                      ++.+|+.++.++.++++..+++..+.+.+.|++||+|++|+++||||..|++.++..+.
T Consensus       317 vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r~~  375 (382)
T COG3448         317 VKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYRNW  375 (382)
T ss_pred             ccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998876543

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.69  E-value=2.7e-16  Score=122.21  Aligned_cols=120  Identities=23%  Similarity=0.273  Sum_probs=105.4

Q ss_pred             CCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCCce
Q 017536          142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPEC  221 (369)
Q Consensus       142 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~  221 (369)
                      .+...+|+  .+++.+++++++.+++++|.+++++.+||+++++++|-||.+++.+..+....+.....+.++|..+.++
T Consensus        65 ita~~iM~--spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM~e~fP~  142 (187)
T COG3620          65 ITAKTIMH--SPVVSVSPDDSISDVVNLMRDKGISQLPVIEEDKVVGSITENDIVRALLEGMESIRSLRVREVMGEPFPT  142 (187)
T ss_pred             EeHhhhcc--CCeeEECchhhHHHHHHHHHHcCCccCceeeCCeeeeeecHHHHHHHHhccccchhhhhHHHHhcCCCCc
Confidence            45688998  7899999999999999999999999999999999999999999985555554555678899999999999


Q ss_pred             ecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHH
Q 017536          222 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (369)
Q Consensus       222 v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~  266 (369)
                      |+++.++..+..++..++  .+.|+ ++|+++||||..||++.+-
T Consensus       143 Vs~~~~l~vI~~LL~~~~--AVlV~-e~G~~vGIITk~DI~k~~~  184 (187)
T COG3620         143 VSPDESLNVISQLLEEHP--AVLVV-ENGKVVGIITKADIMKLLA  184 (187)
T ss_pred             CCCCCCHHHHHHHHhhCC--eEEEE-eCCceEEEEeHHHHHHHHh
Confidence            999999999999888765  46677 6899999999999998543

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.68  E-value=1e-15  Score=118.80  Aligned_cols=110  Identities=28%  Similarity=0.343  Sum_probs=96.8

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-C-CEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHH
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD  230 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~-~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~  230 (369)
                      ++.+++++.++.++++.|.+++++.+||++ + ++++|+++.+|+++.+..........++.++|.++++++++++++.+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~   81 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIKY   81 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHHH
Confidence            578899999999999999999999999998 6 89999999999974454433333346789999888999999999999


Q ss_pred             HHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       231 a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      +++.|.+.+.+.+||+|+ |+++|+||..|+++
T Consensus        82 ~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~  113 (114)
T cd04630          82 CARLMERTNIRRAPVVEN-NELIGIISLTDIFL  113 (114)
T ss_pred             HHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence            999999999999999997 99999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.68  E-value=1.1e-15  Score=118.79  Aligned_cols=109  Identities=24%  Similarity=0.308  Sum_probs=96.7

Q ss_pred             eeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhc-CCCccccccccccccCCceecCCCCHHHH
Q 017536          154 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQ-NLPADSTLVEKVMTPNPECATIDTPIVDA  231 (369)
Q Consensus       154 ~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~-~~~~~~~~v~~~m~~~~~~v~~~~~l~~a  231 (369)
                      +.++++++++.++++.|.+.+...+||++ +|+++|+++.+|++ +.... .......++.++|.+++.++++++++.++
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~-~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a   81 (114)
T cd04619           3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVV-RQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLHDV   81 (114)
T ss_pred             eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHH-HHHhhcCCCcccCCHHHHhcCCCeeECCCCCHHHH
Confidence            77899999999999999999999999998 88999999999997 44432 12223567899999999999999999999


Q ss_pred             HHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       232 ~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      ++.|.+++...+||+|++|+++|+||..|+++
T Consensus        82 ~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          82 WQVMKQRGLKNIPVVDENARPLGVLNARDALK  113 (114)
T ss_pred             HHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence            99999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.67  E-value=1.3e-15  Score=117.78  Aligned_cols=108  Identities=23%  Similarity=0.268  Sum_probs=95.0

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHH
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  231 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a  231 (369)
                      ++.+++++.++.++.+.|.+.+.+.+||++ +++++|+++..|+. +....  .....++.++|..++.++++++++.+|
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~-~~~~~--~~~~~~v~~~~~~~~~~v~~~~~l~~a   78 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLL-EIGPN--DYETLKVCEVYIVPVPIVYCDSKVTDL   78 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHH-hhccc--cccccChhheeecCCcEECCCCcHHHH
Confidence            477899999999999999999999999998 78999999999996 43211  112357899998889999999999999


Q ss_pred             HHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       232 ~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      +++|.+++.+++||+|++|+++|+||..|+++
T Consensus        79 l~~m~~~~~~~lpVvd~~~~~~Giit~~di~~  110 (111)
T cd04603          79 LRIFRETEPPVVAVVDKEGKLVGTIYERELLR  110 (111)
T ss_pred             HHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence            99999999999999998899999999999985

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.66  E-value=1.4e-15  Score=144.63  Aligned_cols=148  Identities=24%  Similarity=0.305  Sum_probs=123.8

Q ss_pred             HhhhhHHHHHHHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeC
Q 017536          104 AEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVE  183 (369)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~  183 (369)
                      ++..+++..+..+     |.++++.+...+...+.....++.++|.  .+++++++++++.++++.|.+++++.+||+++
T Consensus        55 Te~~MAi~~A~~G-----GigvIh~n~~i~~qae~v~~VKv~eim~--~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~  127 (475)
T TIGR01303        55 AGRRMAETVARRG-----GIVILPQDLPIPAVKQTVAFVKSRDLVL--DTPITLAPHDTVSDAMALIHKRAHGAAVVILE  127 (475)
T ss_pred             HHHHHHHHHHHCC-----CEEEEeCCCCHHHHHHHHhhcchhhccc--cCCeEECCCCCHHHHHHHHHhcCCeEEEEEEC
Confidence            3344444444444     7777777755666666666777888988  67899999999999999999999999999998


Q ss_pred             CEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          184 NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       184 ~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      ++++|++|.+|+. ..     .. ..++.++|+++++++++++++.+|+++|.+++.+++||+|++|+++|+||..||++
T Consensus       128 gklvGIVT~rDL~-~~-----~~-~~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~  200 (475)
T TIGR01303       128 DRPVGLVTDSDLL-GV-----DR-FTQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALR  200 (475)
T ss_pred             CEEEEEEEHHHhh-cC-----CC-CCCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHH
Confidence            8999999999984 21     11 35799999999999999999999999999999999999999999999999999998


Q ss_pred             HH
Q 017536          264 AA  265 (369)
Q Consensus       264 ~~  265 (369)
                      +.
T Consensus       201 ~~  202 (475)
T TIGR01303       201 AT  202 (475)
T ss_pred             HH
Confidence            54

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.66  E-value=6.8e-16  Score=131.94  Aligned_cols=130  Identities=20%  Similarity=0.322  Sum_probs=112.1

Q ss_pred             CCcccccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 017536           37 NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE  115 (369)
Q Consensus        37 ~~~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~  115 (369)
                      ...+.++.|||+++++++.+++++.+|.++|.+++++.+||+| +.+++|+++.+|+++..-                  
T Consensus       241 ~~~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~------------------  302 (382)
T COG3448         241 RMGELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHAR------------------  302 (382)
T ss_pred             HhccccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccC------------------
Confidence            3456789999999999999999999999999999999999999 689999999999986411                  


Q ss_pred             hHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHH
Q 017536          116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKD  194 (369)
Q Consensus       116 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~d  194 (369)
                                   ..+.+.++ .+...+++.+|+  +.+.++.++++..+++-.+.+.+.+++||+| .|+++||+|..|
T Consensus       303 -------------~~p~qrlr-~~~~~~vk~imt--~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtD  366 (382)
T COG3448         303 -------------PSPFQRLR-FLRPPTVKGIMT--TPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTD  366 (382)
T ss_pred             -------------cchHHHhh-ccCCCccccccc--CcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHH
Confidence                         12233333 456788999999  6799999999999999999999999999999 999999999999


Q ss_pred             HHHHHH
Q 017536          195 ILMRVI  200 (369)
Q Consensus       195 ll~~~~  200 (369)
                      ++..+.
T Consensus       367 liaal~  372 (382)
T COG3448         367 LIAALY  372 (382)
T ss_pred             HHHHHH
Confidence            984443

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.66  E-value=1.5e-15  Score=144.61  Aligned_cols=135  Identities=25%  Similarity=0.276  Sum_probs=117.4

Q ss_pred             CCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHH
Q 017536          122 GTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVI  200 (369)
Q Consensus       122 g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~  200 (369)
                      |.++.+.+-..+...+.+...++.++|.  .+++++++++++.++++.|.+++++++||++ +++++|++|.+|+. .. 
T Consensus        69 GiGvih~nl~~~~q~~~l~~VKv~~iMi--~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~-~~-  144 (479)
T PRK07807         69 GLVVLPQDIPIDVVAEVVAWVKSRDLVF--DTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCA-GV-  144 (479)
T ss_pred             CceEeeCCCCHHHHHHHHhhcccccccc--cCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHh-cC-
Confidence            5566665555556666667777889998  6899999999999999999999999999998 88999999999994 21 


Q ss_pred             hcCCCccccccccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHH
Q 017536          201 SQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (369)
Q Consensus       201 ~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~  265 (369)
                          .. ..++.++|+++++++++++++.+|++.|.+++.+.+||+|++|+++|+||..||++..
T Consensus       145 ----~~-~~~V~diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~  204 (479)
T PRK07807        145 ----DR-FTQVRDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRAT  204 (479)
T ss_pred             ----cc-CCCHHHhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHh
Confidence                11 3579999999999999999999999999999999999999999999999999999864

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.66  E-value=2.2e-15  Score=118.04  Aligned_cols=110  Identities=14%  Similarity=0.189  Sum_probs=91.7

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCC-ccccccc------cccccCCceecC
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLP-ADSTLVE------KVMTPNPECATI  224 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~-~~~~~v~------~~m~~~~~~v~~  224 (369)
                      ++.++++++++.++++.|.+++.+++||++ +|+++|+++.+|++ .+...+.. ....++.      +.|..++.++++
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   80 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVI-NLAKEGAYNNLDLTVGEALERRSQDFEGVRTCSP   80 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHH-HHHhcCccccccCCHHHHHhhcccCCCCCeEEcC
Confidence            478899999999999999999999999998 88999999999997 54433221 1111222      334456789999


Q ss_pred             CCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          225 DTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       225 ~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      ++++.++++.|.+++.+.+||+|++|+++|+||+.|+++
T Consensus        81 ~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~  119 (120)
T cd04641          81 DDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ  119 (120)
T ss_pred             CCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence            999999999999999999999998899999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.65  E-value=2.1e-15  Score=113.70  Aligned_cols=93  Identities=22%  Similarity=0.267  Sum_probs=84.8

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-C-CEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHH
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD  230 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~-~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~  230 (369)
                      ++.++++++++.++.+.|.+++++++||++ + ++++|++|.+|+. +...                 +.++.+++++.+
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~-~~~~-----------------~~~v~~~~~l~~   63 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFI-LILR-----------------LVSIHPERSLFD   63 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHh-hhee-----------------eEEeCCCCcHHH
Confidence            478999999999999999999999999998 4 7999999999996 3211                 778999999999


Q ss_pred             HHHHHHhCCCceeeEEcCC-CcEEEEEeHHHHHH
Q 017536          231 ALHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITH  263 (369)
Q Consensus       231 a~~~~~~~~~~~l~Vvd~~-g~~~Givt~~di~~  263 (369)
                      |++.|.+++.+++||+|++ |+++|+||.+|++.
T Consensus        64 a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~   97 (98)
T cd04618          64 AALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK   97 (98)
T ss_pred             HHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence            9999999999999999987 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.64  E-value=3.8e-15  Score=115.75  Aligned_cols=110  Identities=27%  Similarity=0.397  Sum_probs=96.2

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHH
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  231 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a  231 (369)
                      ++.++++++++.++.+.|.+.+.+.+||++ +++++|+++.+|++ ............++.++|.+++.++++++++.++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~   80 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLL-RALEADEAGEPSAVDEVATPPLLTVHPDEPLAHA   80 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHH-HHHhcccccccccHHHhccCCceEECCCCCHHHH
Confidence            467889999999999999999999999999 79999999999997 4443333222445888998899999999999999


Q ss_pred             HHHHHhCCCceeeEEcCC--CcEEEEEeHHHHHH
Q 017536          232 LHIMHDGKFLHLPVVDRD--GDVVDVVDVIHITH  263 (369)
Q Consensus       232 ~~~~~~~~~~~l~Vvd~~--g~~~Givt~~di~~  263 (369)
                      ++.|.+++...+||+|++  |+++|+||..|+++
T Consensus        81 l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~  114 (115)
T cd04593          81 LDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL  114 (115)
T ss_pred             HHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence            999999999999999987  89999999999986

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.64  E-value=2.3e-15  Score=138.81  Aligned_cols=123  Identities=22%  Similarity=0.279  Sum_probs=106.9

Q ss_pred             CCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccC
Q 017536          140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN  218 (369)
Q Consensus       140 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~  218 (369)
                      ...+++++|.+.++++++++++++.++++.|.+++.+.+||++ +|+++|++|.+|+. +....+......++.++|.++
T Consensus       200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~-~~~~~~~~~~~~~v~~im~~~  278 (326)
T PRK10892        200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLR-RVFDMGIDLRQASIADVMTPG  278 (326)
T ss_pred             ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHH-HHHhcCCCcccCCHHHhcCCC
Confidence            4456899998433899999999999999999998888888888 89999999999996 555444333356899999999


Q ss_pred             CceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHH
Q 017536          219 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (369)
Q Consensus       219 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~  264 (369)
                      +.++.+++++.+|++.|.+++.+++||+| +|+++|+||..|++++
T Consensus       279 ~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~  323 (326)
T PRK10892        279 GIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA  323 (326)
T ss_pred             CEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence            99999999999999999999999999997 6899999999999974

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.63  E-value=1.4e-15  Score=120.02  Aligned_cols=112  Identities=17%  Similarity=0.108  Sum_probs=96.2

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHH
Q 017536          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD  230 (369)
Q Consensus       152 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~  230 (369)
                      +++.+++++.++.++++.|.+++.+++||++ +++++|+++.+|++...... ......+++++|.+++.++.+++++.+
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~-~~~~~~~v~~im~~~~~~v~~~~~~~~   80 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSG-KVQPSDPVSKALYKQFKRVNKNDTLGK   80 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHh-ccCCCCcHHHHhhccceecCCCCCHHH
Confidence            3588899999999999999999999999998 78999999999998444433 323367999999999999999999999


Q ss_pred             HHHHHH---------hCCCceeeEEcCCCcEEEEEeHHHHHHH
Q 017536          231 ALHIMH---------DGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (369)
Q Consensus       231 a~~~~~---------~~~~~~l~Vvd~~g~~~Givt~~di~~~  264 (369)
                      +.+++.         +.+.+++||+|++|+++|+||..|++++
T Consensus        81 v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~  123 (124)
T cd04608          81 LSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY  123 (124)
T ss_pred             HHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence            999653         3367888999988999999999999975

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.63  E-value=5e-15  Score=115.73  Aligned_cols=110  Identities=21%  Similarity=0.259  Sum_probs=94.6

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCcccccccccccc--CCceecCCCCHH
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDTPIV  229 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~  229 (369)
                      ++.+++++.++.++++.|.+++.+++||++ +++++|++|..|+.+... ........++.++|.+  ++.++++++++.
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~   80 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASI-GGADLQKVPVGVIMTRMPNITTTTPEESVL   80 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHH-cCCCccCCCHHHHhCCCCCcEEECCCCcHH
Confidence            467899999999999999999999999998 689999999999974433 3332335568889974  688999999999


Q ss_pred             HHHHHHHhCCCceeeEEcCC---CcEEEEEeHHHHHH
Q 017536          230 DALHIMHDGKFLHLPVVDRD---GDVVDVVDVIHITH  263 (369)
Q Consensus       230 ~a~~~~~~~~~~~l~Vvd~~---g~~~Givt~~di~~  263 (369)
                      +++++|.+++.+.+||+|++   |+++|+||..|+++
T Consensus        81 ~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          81 EAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             HHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence            99999999999999999987   69999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.63  E-value=7.7e-15  Score=113.52  Aligned_cols=111  Identities=58%  Similarity=0.840  Sum_probs=96.8

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHHH
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  232 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~  232 (369)
                      ++.++.++.++.++++.|.+++.+.+||+++++++|+++.+|++......+......++.++|.+++.++++++++.+++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~~~~   81 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDGNKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVLEAL   81 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHHHHH
Confidence            46788999999999999998899999999889999999999997555443322222578899988899999999999999


Q ss_pred             HHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       233 ~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      +.|.+++.+++||+|++|+++|+||..|++.
T Consensus        82 ~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~  112 (113)
T cd04587          82 HLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH  112 (113)
T ss_pred             HHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence            9999999999999998899999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.63  E-value=9.9e-15  Score=135.64  Aligned_cols=120  Identities=27%  Similarity=0.356  Sum_probs=109.9

Q ss_pred             CCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCC
Q 017536          141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  219 (369)
Q Consensus       141 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~  219 (369)
                      .+++.++++  .++++|++.+++.+|...|.+.|.+++.+++ ++...||+|.+|+..+.+.++.+. +.+|+++|+.|+
T Consensus       148 ~trv~~~~~--~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~-~~~V~evmT~p~  224 (610)
T COG2905         148 LTRVGEVKT--LPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSK-TQKVSEVMTSPV  224 (610)
T ss_pred             HHHHHHHhc--CCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCc-ccchhhhhccCc
Confidence            345677777  6799999999999999999999999888888 899999999999987888777665 789999999999


Q ss_pred             ceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHH
Q 017536          220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (369)
Q Consensus       220 ~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~  264 (369)
                      +++..++.+.+|+-.|.+++++++||.+ +|+++|+||..||++.
T Consensus       225 ~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l  268 (610)
T COG2905         225 ISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRL  268 (610)
T ss_pred             eeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHh
Confidence            9999999999999999999999999996 7999999999999985

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.62  E-value=5e-15  Score=129.70  Aligned_cols=119  Identities=24%  Similarity=0.247  Sum_probs=110.2

Q ss_pred             CCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCc
Q 017536          142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE  220 (369)
Q Consensus       142 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~  220 (369)
                      ..|.++|+|..+...+.+++++++..++..+.+++++||+| ..+++|++|.+|+.      ... .+.++..+|+++|+
T Consensus       188 ~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~------~~~-~~t~ieKVMtknp~  260 (432)
T COG4109         188 ITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVL------DKK-PSTTIEKVMTKNPI  260 (432)
T ss_pred             eeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhh------cCC-CCccHHHHhccCCe
Confidence            35789999988999999999999999999999999999999 89999999999997      222 26899999999999


Q ss_pred             eecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHH
Q 017536          221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (369)
Q Consensus       221 ~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~  267 (369)
                      ++.+.+++..+.+.|...++..+||+|++.+++|+||+.|+++++-.
T Consensus       261 tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~  307 (432)
T COG4109         261 TVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQM  307 (432)
T ss_pred             eecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999997643

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.62  E-value=8.2e-15  Score=113.25  Aligned_cols=110  Identities=33%  Similarity=0.479  Sum_probs=95.3

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHH
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  231 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a  231 (369)
                      ++.+++++.++.++++.|.+.+++++||++ +++++|+++.+|+++.+..........++.++|.+++.++++++++.++
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   81 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVDEA   81 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHHHH
Confidence            467889999999999999999999999998 6899999999999743433222222457889998889999999999999


Q ss_pred             HHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       232 ~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      ++.|.+.+.+.+||+++ |+++|+||..|+++
T Consensus        82 l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  112 (113)
T cd04623          82 MALMTERRFRHLPVVDG-GKLVGIVSIGDVVK  112 (113)
T ss_pred             HHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence            99999999999999987 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.62  E-value=7.3e-15  Score=115.67  Aligned_cols=111  Identities=27%  Similarity=0.417  Sum_probs=97.2

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCC----------ccccccccccccCCc
Q 017536          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLP----------ADSTLVEKVMTPNPE  220 (369)
Q Consensus       152 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~----------~~~~~v~~~m~~~~~  220 (369)
                      +++.+++++.++.++.+.|.+.+++++||++ +|+++|+++.+|++ ........          ....++.++|.+++.
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   80 (124)
T cd04600           2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLL-RHARPDGRRPLRGRLRGRDKPETVGDIMSPPVV   80 (124)
T ss_pred             CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHH-hhhcccccchhhhhhhcccccccHHHhccCCCe
Confidence            4688899999999999999999999999998 69999999999997 44332211          124478899988999


Q ss_pred             eecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       221 ~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      ++++++++.++++.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~  123 (124)
T cd04600          81 TVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA  123 (124)
T ss_pred             eeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence            9999999999999999999999999999999999999999986

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.61  E-value=1.2e-14  Score=112.98  Aligned_cols=110  Identities=25%  Similarity=0.345  Sum_probs=94.0

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcC-CceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCC--CCHH
Q 017536          153 KVVTISPTDTVLMATKKMLELR-LSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATID--TPIV  229 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~-~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~--~~l~  229 (369)
                      ++.+++++.++.++++.|.+.+ ...+||+++++++|+++..|++ +...........++.++|.+++.+++++  +++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~-~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~l~   80 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEKGRLLGIFTERDIV-RLTAIGKDLSDLPIGEVMTQPVVTLQESEIQDIF   80 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCCCcEEEEEeHHHHH-HHHhcCCCccccCHHHhcCCCcEEEecccccCHH
Confidence            3667899999999999998888 6778888888999999999997 5544333322467889998888889887  7899


Q ss_pred             HHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          230 DALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       230 ~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      ++++.|.+++...+||+|++|+++|+||..|+++
T Consensus        81 ~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~  114 (115)
T cd04620          81 TALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ  114 (115)
T ss_pred             HHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence            9999999999999999999999999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.61  E-value=5.8e-15  Score=135.98  Aligned_cols=122  Identities=19%  Similarity=0.275  Sum_probs=106.4

Q ss_pred             CCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCC
Q 017536          141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  219 (369)
Q Consensus       141 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~  219 (369)
                      ..+|+++|.+..+++++++++++.++.+.|.+.+.+.+||++ +|+++|+++.+|+. +.+...... ..++.++|.+++
T Consensus       196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~-~~~~~~~~~-~~~v~~im~~~~  273 (321)
T PRK11543        196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLR-RWLVGGGAL-TTPVNEAMTRGG  273 (321)
T ss_pred             HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHH-HHHhCCCCc-CCcHHHhcCCCC
Confidence            356899998422399999999999999999988999999999 88999999999996 544433222 457999999999


Q ss_pred             ceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHH
Q 017536          220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (369)
Q Consensus       220 ~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~  264 (369)
                      .++.+++++.+|++.|.+++...+||+|++|+++|+||..|++++
T Consensus       274 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~  318 (321)
T PRK11543        274 TTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA  318 (321)
T ss_pred             EEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence            999999999999999999999999999988999999999999974

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.61  E-value=1.6e-14  Score=111.69  Aligned_cols=111  Identities=32%  Similarity=0.478  Sum_probs=97.3

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHHH
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  232 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~  232 (369)
                      ++.++++++++.++.+.|.+.+++++||+++|+++|+++..|++.+...........++.++|...+.++++++++.+++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   81 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCENDRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVDEAA   81 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHHHHH
Confidence            47789999999999999999999999999989999999999986444444333323358999988999999999999999


Q ss_pred             HHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       233 ~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      +.|.+.+.+++||+|++|+++|+||..|+++
T Consensus        82 ~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  112 (113)
T cd04622          82 RLMREHQVRRLPVVDDDGRLVGIVSLGDLAR  112 (113)
T ss_pred             HHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            9999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.61  E-value=1.8e-14  Score=129.55  Aligned_cols=172  Identities=13%  Similarity=0.149  Sum_probs=125.2

Q ss_pred             EEEeHHHHHHHHHhccCCCccccccccccc--CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-C-CeEEEEEehHHHHHH
Q 017536           20 GILTDKDIATRVIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYD   95 (369)
Q Consensus        20 Givt~~Di~~~~~~~~~~~~~~~v~dim~~--~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~-~~~vGiv~~~dil~~   95 (369)
                      |.++..+  +.++.+..++.+.+|+++|++  +++++++++++.++++.+.+++++++||++ + ++++|+++.+|++..
T Consensus        48 g~l~~~e--~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~  125 (292)
T PRK15094         48 DLIDEDT--RDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPF  125 (292)
T ss_pred             CCCCHHH--HHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhH
Confidence            4454433  234445568888999999997  689999999999999999999999999998 4 789999999999753


Q ss_pred             HHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCC
Q 017536           96 AIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRL  175 (369)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~  175 (369)
                      ...                                       ......+.++|.+   ++++++++++.++++.|.+++.
T Consensus       126 ~~~---------------------------------------~~~~~~l~~l~r~---~~~V~e~~~l~~~L~~m~~~~~  163 (292)
T PRK15094        126 MRS---------------------------------------DAEAFSMDKVLRQ---AVVVPESKRVDRMLKEFRSQRY  163 (292)
T ss_pred             hhc---------------------------------------cCCcCCHHHHcCC---CcCcCCCCcHHHHHHHHHhcCC
Confidence            100                                       0001225566753   5689999999999999999999


Q ss_pred             ceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccc-ccc--ccCCceecCCCCHHHHHHHH
Q 017536          176 SSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVE-KVM--TPNPECATIDTPIVDALHIM  235 (369)
Q Consensus       176 ~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~-~~m--~~~~~~v~~~~~l~~a~~~~  235 (369)
                      +.+||+| .|.++|+||..|++..+...-.+..+..-. .+-  ....+.++..+++.++.+.+
T Consensus       164 ~~a~VvDe~G~viGiVTleDIle~ivGei~de~d~~~~~~i~~~~~~~~~v~G~~~l~dl~~~l  227 (292)
T PRK15094        164 HMAIVIDEFGGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQLSRHTWTVRALASIEDFNEAF  227 (292)
T ss_pred             EEEEEEeCCCCEEEEeEHHHHHHHHhCCCccccccccccccEEeCCCeEEEEeccCHHHHHHHh
Confidence            9999999 788999999999996665443222111110 111  12346667777777766665

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.61  E-value=1.6e-14  Score=111.86  Aligned_cols=109  Identities=27%  Similarity=0.412  Sum_probs=95.7

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHH
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  231 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a  231 (369)
                      ++.+++++.++.++++.|.+.+.+.+||++ +++++|+++.+|++ +........ ..++.++|.+++.++++++++.++
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~-~~~~~~~~~-~~~v~~~~~~~~~~v~~~~~l~~~   80 (113)
T cd04607           3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIR-RALLKGLSL-DDPVSEVMNRNPITAKVGSSREEI   80 (113)
T ss_pred             cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHH-HHHhcCCCc-CCCHHHhhcCCCEEEcCCCCHHHH
Confidence            367789999999999999999999999998 78999999999997 444333322 457899998889999999999999


Q ss_pred             HHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       232 ~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      ++.|.+++.+++||+|++|+++|+||..|++.
T Consensus        81 ~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  112 (113)
T cd04607          81 LALMRERSIRHLPILDEEGRVVGLATLDDLLS  112 (113)
T ss_pred             HHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence            99999999999999998999999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.60  E-value=2.7e-14  Score=109.96  Aligned_cols=109  Identities=31%  Similarity=0.481  Sum_probs=96.6

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHHH
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  232 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~  232 (369)
                      ++.+++++.++.++.+.|.+.++..+||+++++++|+++.+|++ +....... ...++.++|.+++.++++++++.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~~l~-~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~l~~~l   79 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDDGRPLGIVTERDIL-RLLASGPD-LQTPVGEVMSSPLLTVPADTSLYDAR   79 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEeHHHHH-HHHhcCCC-CCcCHHHhcCCCceEECCCCCHHHHH
Confidence            46789999999999999999899999999989999999999997 55443332 35678999988999999999999999


Q ss_pred             HHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       233 ~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      +.|.+.+.+.+||+|++|++.|+||..|+++
T Consensus        80 ~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~  110 (111)
T cd04611          80 QLMREHGIRHLVVVDDDGELLGLLSQTDLLQ  110 (111)
T ss_pred             HHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence            9999999999999998899999999999975

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.60  E-value=1.3e-14  Score=112.22  Aligned_cols=110  Identities=21%  Similarity=0.286  Sum_probs=97.2

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHH
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  231 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a  231 (369)
                      ++++++++.++.++.+.|.+.+++++||++ +++++|+++..|++ ++..........++.++|.+++.++++++++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~-~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~   80 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIR-EILFDPSLYDLVVASDIMTKPPVVVYPEDSLEDA   80 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHH-HHHhcccccccEEHHHhccCCCcEEcCCCCHHHH
Confidence            477899999999999999999999999999 78999999999997 5554433322367899999999999999999999


Q ss_pred             HHHHHhCCCceeeEEcC-CCcEEEEEeHHHHHH
Q 017536          232 LHIMHDGKFLHLPVVDR-DGDVVDVVDVIHITH  263 (369)
Q Consensus       232 ~~~~~~~~~~~l~Vvd~-~g~~~Givt~~di~~  263 (369)
                      ++.|.+.+.+.+||+|+ +|+++|++|..|++.
T Consensus        81 ~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          81 LKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             HHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence            99999999999999997 899999999999975

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.60  E-value=1.6e-14  Score=113.92  Aligned_cols=110  Identities=32%  Similarity=0.388  Sum_probs=95.8

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-C-CEEEEEeehHHHHHHHHhcCCCc-----------cccccccccccCC
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPA-----------DSTLVEKVMTPNP  219 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~-~~~~Giit~~dll~~~~~~~~~~-----------~~~~v~~~m~~~~  219 (369)
                      ++.+++++.++.++++.|.+.+.+.+||++ + |+++|+++..|++ +++......           ...++.++|.+++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDIL-KYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNV   80 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHH-HHhhccchhccccccccchhhhcCHHHHhcCCc
Confidence            467889999999999999999999999998 5 8999999999997 544432211           1347888998889


Q ss_pred             ceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       220 ~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      +++++++++.++++.|.+.+.+.+||+|++|+++|+||..||++
T Consensus        81 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~  124 (125)
T cd04631          81 ITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK  124 (125)
T ss_pred             eEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence            99999999999999999999999999998899999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.60  E-value=1.8e-14  Score=113.95  Aligned_cols=110  Identities=22%  Similarity=0.208  Sum_probs=92.3

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccc-------------cccccccccC
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADS-------------TLVEKVMTPN  218 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~-------------~~v~~~m~~~  218 (369)
                      ++.++++++++.++++.|.+++++++||++ +|+++|+++..|++ +..........             ......|..+
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLK-GLLLSPDDLLLYRTITFKELSEKFTDSDGVKSRP   80 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhh-hhhcCcchhhcccchhhhhhhhhcccccccccCC
Confidence            477899999999999999999999999998 78999999999997 44432221111             1123466678


Q ss_pred             CceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          219 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       219 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      +.++++++++.+|++.|.+++.+++||+|++|+++|+||..|+++
T Consensus        81 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~  125 (126)
T cd04642          81 LITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS  125 (126)
T ss_pred             CeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence            899999999999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.59  E-value=2e-14  Score=111.22  Aligned_cols=109  Identities=20%  Similarity=0.232  Sum_probs=95.3

Q ss_pred             eeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHHH
Q 017536          154 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  232 (369)
Q Consensus       154 ~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~  232 (369)
                      +..+.++.++.++++.|.+.+.+++||++ +++++|+++.+|+++.... .......++.++|..++.++++++++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~-~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~   81 (113)
T cd04615           3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALE-SEELKDAKVREVMNSPVITIDANDSIAKAR   81 (113)
T ss_pred             CEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhh-hhhhcCCcHHHhccCCceEECCCCcHHHHH
Confidence            67789999999999999999999999998 7899999999999733333 222234678899988999999999999999


Q ss_pred             HHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       233 ~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      +.|.+++...+||+|++|+++|++|..|+++
T Consensus        82 ~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          82 WLMSNNNISRLPVLDDKGKVGGIVTEDDILR  112 (113)
T ss_pred             HHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence            9999999999999999999999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.59  E-value=2.1e-14  Score=110.67  Aligned_cols=108  Identities=25%  Similarity=0.368  Sum_probs=95.6

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHH
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  231 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a  231 (369)
                      ++.++++++++.++++.|.+.+.+.+||++ +++++|+++..|++ +.+.....  ..++.++|..++.++++++++.++
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~-~~~~~~~~--~~~v~~~~~~~~~~i~~~~~~~~~   78 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLI-RALAEGGP--DAPVRGVMRRDFPTVSPSATLDAV   78 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHH-HHHHhcCC--CCcHHHHhcCCCcEECCCCcHHHH
Confidence            467789999999999999888899999999 68999999999997 54433322  457899998899999999999999


Q ss_pred             HHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       232 ~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      ++.|.+++.+++||+|++|+++|++|..|+.+
T Consensus        79 ~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~  110 (111)
T cd04639          79 LRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE  110 (111)
T ss_pred             HHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence            99999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.59  E-value=3.4e-14  Score=109.34  Aligned_cols=107  Identities=33%  Similarity=0.402  Sum_probs=95.2

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHH
Q 017536          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD  230 (369)
Q Consensus       152 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~  230 (369)
                      +++.+++++.++.++++.|.+++.+++||++ +|+++|+++.+|++ +.....    ..++.++|.+++.++++++++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~-~~~~~~----~~~~~~~~~~~~~~v~~~~~l~~   76 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDIS-KAVARD----KKSVEDIMTRNVITATPDEPIDV   76 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHH-HHHhhC----ccCHHHhcCCCCeEECCCCcHHH
Confidence            4578899999999999999999999999998 78999999999997 444332    23588889889999999999999


Q ss_pred             HHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       231 a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      +++.|.+++.+.+||++++|++.|+||..|+++
T Consensus        77 ~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~  109 (110)
T cd04605          77 AARKMERHNISALPVVDAENRVIGIITSEDISK  109 (110)
T ss_pred             HHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence            999999999999999999999999999999975

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.59  E-value=4.5e-14  Score=108.67  Aligned_cols=108  Identities=26%  Similarity=0.341  Sum_probs=95.7

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHHH
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  232 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~  232 (369)
                      ++.++++++++.++.+.|.+.+++++||+++++++|+++.+|++ +....+..  ..++.++|..++.+++++.++.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~~l~-~~~~~~~~--~~~v~~~~~~~~~~v~~~~~~~~~~   78 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVDDGKLVGIVTLSDIA-HAIARGLE--LAKVKDVMTKDVITIDEDEQLYDAI   78 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHH-HHHhcccc--ccCHHHHhcCCceEECCCCCHHHHH
Confidence            47789999999999999999999999999888999999999997 55443322  3578889988899999999999999


Q ss_pred             HHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       233 ~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      +.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus        79 ~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  109 (110)
T cd04588          79 RLMNKHNVGRLIVTDDEGRPVGIITRTDILR  109 (110)
T ss_pred             HHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence            9999999999999998899999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.59  E-value=2e-14  Score=111.73  Aligned_cols=108  Identities=26%  Similarity=0.258  Sum_probs=92.7

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCc-c----ccccccccccCCceecCCC
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPA-D----STLVEKVMTPNPECATIDT  226 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~-~----~~~v~~~m~~~~~~v~~~~  226 (369)
                      +++++++++++.++++.|.+.+.+.+||++ +++++|+++.+|++ ++....... .    ..++.++|.+++.++++++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~   80 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDIL-WKLKGLENLDLERLVDLKVIDVMNTDVPVIIDDA   80 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHH-HHhhccCchhHHHHhCCcHHHHhcCCCceecCCC
Confidence            478899999999999999999999999998 78999999999997 444322111 1    3578899988999999999


Q ss_pred             CHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          227 PIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       227 ~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      ++.++++.|.+.+  .+||+|++|+++|++|..|+++
T Consensus        81 ~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~  115 (116)
T cd04643          81 DIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK  115 (116)
T ss_pred             CHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence            9999999998865  5999999999999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.59  E-value=3.9e-14  Score=109.41  Aligned_cols=109  Identities=30%  Similarity=0.502  Sum_probs=95.9

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHH
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  231 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a  231 (369)
                      ++.+++++.++.++.+.|.+.+++++||++ +++++|+++..|++ +.+..... ...++.++|.+++.++++++++.++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~-~~~~~~~~-~~~~v~~~~~~~~~~v~~~~~~~~~   79 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIV-RAVAAGID-LDTPVSEIMTRDLVTVDPDEPVAEA   79 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHH-HHHhccCC-CccCHHHhccCCCEEECCCCcHHHH
Confidence            467889999999999999999999999998 78999999999997 44433322 2457889998899999999999999


Q ss_pred             HHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       232 ~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      ++.|.+++...+||+|++|++.|++|..|+++
T Consensus        80 ~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~  111 (112)
T cd04624          80 AKLMRKNNIRHHLVVDKGGELVGVISIRDLVR  111 (112)
T ss_pred             HHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence            99999999999999998899999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.58  E-value=3.1e-14  Score=112.04  Aligned_cols=109  Identities=21%  Similarity=0.335  Sum_probs=90.6

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-C-CEEEEEeehHHHHHHHHhcCCCc---------cccccccccccCCce
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPA---------DSTLVEKVMTPNPEC  221 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~-~~~~Giit~~dll~~~~~~~~~~---------~~~~v~~~m~~~~~~  221 (369)
                      ++.++++++++.++++.|.+++++++||++ + ++++|+++.+|++ ++.......         ....+.++|.+++.+
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLV-EFLWENARSFPGLDPLYPIPLRDLTIGTSDVIS   80 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHH-HHHHHhHHhccchhhhhhhhhhhcccCcCCceE
Confidence            467889999999999999999999999999 5 8999999999997 433221100         001223467788899


Q ss_pred             ecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHH
Q 017536          222 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHIT  262 (369)
Q Consensus       222 v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~  262 (369)
                      +++++++.+|++.|.+++.+++||+|++|+++|+||..|+-
T Consensus        81 v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~  121 (123)
T cd04627          81 INGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR  121 (123)
T ss_pred             eCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence            99999999999999999999999999999999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.58  E-value=4e-14  Score=109.34  Aligned_cols=110  Identities=25%  Similarity=0.391  Sum_probs=93.4

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHHH
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  232 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~  232 (369)
                      ++.+++++.++.++++.|.+.+...++|.++++++|+++.+|+++............++.++|..++.++++++++.+++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~   81 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVMERGELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSIDEVR   81 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHHHHH
Confidence            46789999999999999988888888877789999999999997433322122224579999988889999999999999


Q ss_pred             HHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       233 ~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      +.|.+++...+||+| +|+++|+||..|+++
T Consensus        82 ~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~  111 (112)
T cd04625          82 RLMVERHLRYLPVLD-GGTLLGVISFHDVAK  111 (112)
T ss_pred             HHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence            999999999999998 599999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.58  E-value=6.8e-15  Score=140.75  Aligned_cols=187  Identities=19%  Similarity=0.197  Sum_probs=146.0

Q ss_pred             EEEEEeHHHHHHHHHhccCCCcccccccccccCCeEEeCCCcHHHHHHHHHh-----CCCeEeeEee-CCeEEEEEehHH
Q 017536           18 LCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQ-----GKFRHLPVVE-NGEVIALLDIAK   91 (369)
Q Consensus        18 ~~Givt~~Di~~~~~~~~~~~~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~-----~~~~~lpVvd-~~~~vGiv~~~d   91 (369)
                      +++.++..+  +..+..-..+.+.+++++|+++++++++++++.+|++.|.+     ++...+||+| +++++|+++.+|
T Consensus       110 lL~~l~~~e--r~~i~~ll~~~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~d  187 (449)
T TIGR00400       110 LLASSTEEE--RKAINLLLSYSDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRD  187 (449)
T ss_pred             HHHcCCHHH--HHHHHHHhCCCcchHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHH
Confidence            344555544  23333445677889999999999999999999999999975     4567889888 689999999999


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHH
Q 017536           92 CLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKML  171 (369)
Q Consensus        92 il~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~  171 (369)
                      ++..                                           ....+++++|.  ++++++++++++.++++.|.
T Consensus       188 Ll~a-------------------------------------------~~~~~v~~im~--~~~~~v~~~~~~~eal~~m~  222 (449)
T TIGR00400       188 LILA-------------------------------------------KPEEILSSIMR--SSVFSIVGVNDQEEVARLIQ  222 (449)
T ss_pred             HhcC-------------------------------------------CCCCcHHHHhC--CCCeeECCCCCHHHHHHHHH
Confidence            8632                                           01234778887  56888999999999999999


Q ss_pred             HcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCC
Q 017536          172 ELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDG  250 (369)
Q Consensus       172 ~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g  250 (369)
                      +++...+||+| +|+++|++|.+|++ ..+.+.      ..+++|.....+..+++.+.+++..|.+++...++|.    
T Consensus       223 ~~~~~~lpVVD~~g~lvGiIt~~Dil-~~l~~~------~~ed~~~~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~----  291 (449)
T TIGR00400       223 KYDFLAVPVVDNEGRLVGIVTVDDII-DVIQSE------ATEDFYMIAAVKPLDDSYFDTSILVMAKNRIIWLLVL----  291 (449)
T ss_pred             HcCCCEEeEEcCCCeEEEEEEHHHHH-HHHHhh------hHHHHHHhcCCCCCcchhhhchHHHHHHhccchHHHH----
Confidence            99999999999 89999999999998 444332      2367776666665567888999999999999999886    


Q ss_pred             cEEEEEeHHHHHH
Q 017536          251 DVVDVVDVIHITH  263 (369)
Q Consensus       251 ~~~Givt~~di~~  263 (369)
                      .+.|++| ..++.
T Consensus       292 ~~~~~~t-~~ii~  303 (449)
T TIGR00400       292 LVSSTFT-ATIIS  303 (449)
T ss_pred             HHHHHHH-HHHHH
Confidence            4667776 44444

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.58  E-value=4.8e-14  Score=108.68  Aligned_cols=109  Identities=35%  Similarity=0.490  Sum_probs=95.6

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHHH
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  232 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~  232 (369)
                      ++.+++++.++.++.+.|.+.+.+.+||+++++++|+++..|++..+...... ...++.++|..+++++++++++.+++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~~~~-~~~~i~~~~~~~~~~v~~~~~l~~~~   80 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDDGRLVGIVTDRDLRNRVVAEGLD-PDTPVSEVMTAPPITIPPDATVFEAL   80 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHhccCCC-ccCCHHHHhCCCCeEECCCCcHHHHH
Confidence            47789999999999999999899999999989999999999997444433222 24578899988999999999999999


Q ss_pred             HHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       233 ~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      +.|.+++.+++||+++ |+++|++|..|+++
T Consensus        81 ~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~  110 (111)
T cd04800          81 LLMLERGIHHLPVVDD-GRLVGVISATDLLR  110 (111)
T ss_pred             HHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence            9999999999999987 99999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.58  E-value=3.3e-14  Score=110.11  Aligned_cols=110  Identities=28%  Similarity=0.392  Sum_probs=97.1

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHH
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  231 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a  231 (369)
                      ++++++++.++.++++.|.+.+.+.+||++ +++++|+++..+++ +++.........++.++|.+++.++++++++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~-~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~   81 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLR-RALEKGLDILTLPVADVMTRNPKTIDPDALAAEA   81 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHH-HHHhccCccccCCHHHhhccCCeEECCCCcHHHH
Confidence            467789999999999999888889999998 78999999999997 5555444333457999998889999999999999


Q ss_pred             HHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       232 ~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      ++.|..++...+||+|++|+++|+||..||++
T Consensus        82 ~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~  113 (114)
T cd04604          82 LELMEENKITALPVVDDNGRPVGVLHIHDLLR  113 (114)
T ss_pred             HHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence            99999999999999998899999999999975

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.58  E-value=3.7e-14  Score=109.30  Aligned_cols=107  Identities=21%  Similarity=0.254  Sum_probs=93.3

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-C-CEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHH
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD  230 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~-~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~  230 (369)
                      ++.+++++.++.++.+.|.+.+.+++||++ + ++++|+++..|++ +.......  ..++..+| +++.++++++++.+
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~-~~~~~~~~--~~~~~~~~-~~~~~v~~~~~l~~   77 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLL-RALAEGEE--DLDLRDLL-RPPLFVPESTPLDD   77 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHH-HHHHcCCC--cCCHHHHh-cCCeecCCCCcHHH
Confidence            578899999999999999998999999998 6 8999999999997 55443322  14566666 57889999999999


Q ss_pred             HHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       231 a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      +++.|.+++.+++||+|++|+++|+||..|+++
T Consensus        78 ~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  110 (111)
T cd04590          78 LLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE  110 (111)
T ss_pred             HHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence            999999999999999998899999999999985

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.58  E-value=6.9e-14  Score=131.88  Aligned_cols=161  Identities=14%  Similarity=0.154  Sum_probs=124.4

Q ss_pred             HHhccCCCccccccccccc--CCeEEeCCCcHHHHHHHHHhCCCeEeeEeeC--CeEEEEEehHHHHHHHHHHHHHHHhh
Q 017536           31 VIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEK  106 (369)
Q Consensus        31 ~~~~~~~~~~~~v~dim~~--~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~~~vGiv~~~dil~~~~~~~~~~~~~  106 (369)
                      ++.+-.++++.+|+|+|++  ++++++.++++.++++.+.+++++++||+++  ++++|+++.+|++.....        
T Consensus       181 ~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~--------  252 (408)
T TIGR03520       181 ILQGIVSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNK--------  252 (408)
T ss_pred             HHHHHhccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhcc--------
Confidence            3344558889999999996  7899999999999999999999999999984  689999999999743100        


Q ss_pred             hhHHHHHHHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCE
Q 017536          107 GKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENK  185 (369)
Q Consensus       107 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~  185 (369)
                                                       ...+++++|+   ++.++++++++.++++.|.+++.+..+|+| .|.
T Consensus       253 ---------------------------------~~~~l~~~~~---~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~  296 (408)
T TIGR03520       253 ---------------------------------KNFDWQSLLR---EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGG  296 (408)
T ss_pred             ---------------------------------CCCCHHHHcC---CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCC
Confidence                                             0112455665   478999999999999999999999999999 689


Q ss_pred             EEEEeehHHHHHHHHhcCCCccccccccccc---cCCceecCCCCHHHHHHHHH
Q 017536          186 PRGILTSKDILMRVISQNLPADSTLVEKVMT---PNPECATIDTPIVDALHIMH  236 (369)
Q Consensus       186 ~~Giit~~dll~~~~~~~~~~~~~~v~~~m~---~~~~~v~~~~~l~~a~~~~~  236 (369)
                      .+|+||..|+++.+..+-.+..+ .-.+.+.   ...+.++...++.++.+.|.
T Consensus       297 ~~GiVT~eDileeivgei~de~d-~~~~~i~~~~~~~~~v~G~~~l~~l~~~l~  349 (408)
T TIGR03520       297 TSGLVTLEDIIEEIVGDISDEFD-DEDLIYSKIDDNNYVFEGKTSLKDFYKILK  349 (408)
T ss_pred             EEEEEEHHHHHHHHhCCCCCcCC-cCccceEEeCCCeEEEEeccCHHHHHHHhC
Confidence            99999999999666654333211 1122221   34577777888888877773

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.58  E-value=3.1e-14  Score=109.28  Aligned_cols=104  Identities=30%  Similarity=0.284  Sum_probs=94.5

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHH
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  231 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a  231 (369)
                      ++.++++++++.++.+.|.+.+.+.+||++ +|+++|+++..|++ ...      ...++.++|..++.++++++++.++
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~-~~~------~~~~v~~~~~~~~~~v~~~~~l~~~   75 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVA-GKD------PDTTIEKVMTKNPITVNPKTSVASV   75 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHh-ccc------ccccHHHHhcCCCeEECCCCCHHHH
Confidence            578899999999999999999999999998 79999999999996 221      1457899998889999999999999


Q ss_pred             HHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       232 ~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      ++.|.+++.+.+||+|++|+++|++|..|+++
T Consensus        76 ~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~  107 (108)
T cd04596          76 AHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK  107 (108)
T ss_pred             HHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence            99999999999999999999999999999985

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.58  E-value=4.8e-14  Score=108.75  Aligned_cols=109  Identities=20%  Similarity=0.228  Sum_probs=94.7

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHHH
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  232 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~  232 (369)
                      ++++++++.++.++++.|.+.+...++|++++++.|+++..|++ ............++.++|.+++.++++++++.+++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~-~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~   80 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDGDPRLGIVTRTDLL-DAVLLDGLPSSTPVGEIATFPLITVDPDDFLFNAL   80 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecCCeEEEEEEHHHHH-HHHHcCCCCCCCCHHHHhCCCcEEECCCCcHHHHH
Confidence            36678999999999999999999999999878899999999997 44433222235678899988899999999999999


Q ss_pred             HHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       233 ~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      +.|.+++.+.+||+|+ |+++|+||..|+++
T Consensus        81 ~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~  110 (111)
T cd04589          81 LLMTRHRIHRVVVREG-GEVVGVLEQTDLLS  110 (111)
T ss_pred             HHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence            9999999999999985 89999999999985

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.58  E-value=2.9e-14  Score=114.24  Aligned_cols=109  Identities=23%  Similarity=0.370  Sum_probs=94.4

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCc-----------------------cc
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPA-----------------------DS  208 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~-----------------------~~  208 (369)
                      +++++++++++.++++.|.+.+.+.+||++ +++++|+++..|++ +........                       ..
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLA-FAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVP   80 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHH-HHhhcccccccchhhhhhhhhccccccccccccc
Confidence            467889999999999999999999999999 79999999999997 443321111                       13


Q ss_pred             cccccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          209 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       209 ~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      .+++++|.+++.++++++++.++++.|.+++.+++||+++ |+++|+||..|+++
T Consensus        81 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~  134 (135)
T cd04621          81 LVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR  134 (135)
T ss_pred             ccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence            4788999888899999999999999999999999999986 99999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.57  E-value=6.7e-14  Score=108.06  Aligned_cols=110  Identities=30%  Similarity=0.459  Sum_probs=94.6

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHHH
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  232 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~  232 (369)
                      ++.++++++++.++++.|.+.+.+.+||+++++++|+++..|+++.+..........++.++|.+++.++++++++.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~   81 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDNEKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLNEAA   81 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEECCEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHHHHH
Confidence            46778999999999999999999999999966999999999998444433222224578899988889999999999999


Q ss_pred             HHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       233 ~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      +.|.+++.+.+||+|++ +++|+||..|+++
T Consensus        82 ~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~  111 (112)
T cd04802          82 KLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM  111 (112)
T ss_pred             HHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence            99999999999999865 9999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.57  E-value=3.3e-14  Score=111.59  Aligned_cols=110  Identities=33%  Similarity=0.428  Sum_probs=96.0

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCC---------ccccccccccccCCcee
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLP---------ADSTLVEKVMTPNPECA  222 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~---------~~~~~v~~~m~~~~~~v  222 (369)
                      ++.++.++.++.++.+.|.+.+++++||++ +|+++|+++.+|++ +.......         ....++.++|..++.++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v   80 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLL-RAALSSLSDNGEESLTKERDVPVAEVMKTDVLTV   80 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHH-HHhccccccccccccccccCcCHHHhhCCCCeEe
Confidence            467899999999999999999999999998 68999999999997 44332211         12457889998899999


Q ss_pred             cCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          223 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       223 ~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      ++++++.++++.|.+.+.+.+||+|++|+++|++|..|+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~  121 (122)
T cd04803          81 TPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR  121 (122)
T ss_pred             CCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence            99999999999999999999999998899999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.57  E-value=2.5e-14  Score=107.46  Aligned_cols=93  Identities=16%  Similarity=0.262  Sum_probs=84.8

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHH
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  231 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a  231 (369)
                      +++++.+++++.++++.|.+++++.+||++ +++++|+++.+|+. +..                 .+.++++++++.++
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~-~~~-----------------~~~~v~~~~~l~~a   63 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLI-AKS-----------------EVVTATKRTTVSEC   63 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHh-cCC-----------------CcEEecCCCCHHHH
Confidence            477899999999999999999999999998 79999999999996 210                 17899999999999


Q ss_pred             HHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       232 ~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      ++.|.+++.+++||+|++|+++|+||..|+++
T Consensus        64 ~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~   95 (96)
T cd04614          64 AQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK   95 (96)
T ss_pred             HHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            99999999999999998899999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.57  E-value=2.3e-14  Score=111.11  Aligned_cols=108  Identities=19%  Similarity=0.256  Sum_probs=91.7

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcC-CceEEEEe-CCEEEEEeehHHHHHHHHhcCCCcccccccccccc--CCceecCCCCH
Q 017536          153 KVVTISPTDTVLMATKKMLELR-LSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDTPI  228 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~-~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l  228 (369)
                      ++.+++++.++.++++.|.+++ .+.+||++ +++++|+++.+|++ .......  ...++.++|.+  +++++.+++++
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~-~~~~~~~--~~~~v~~~~~~~~~~~~v~~~~~l   78 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLR-AIPTSQW--AQTTVIQVMTPAAKLVTVLSEESL   78 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHH-HHHHhhc--cccchhhhhcccccceEECCCCcH
Confidence            4778999999999999987665 88999998 68999999999997 4433222  14578888864  35789999999


Q ss_pred             HHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          229 VDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       229 ~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      .+|++.|.+++.+++||+|++|+++|++|..||++
T Consensus        79 ~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~  113 (114)
T cd04801          79 AEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR  113 (114)
T ss_pred             HHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence            99999999999999999998899999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.57  E-value=3.5e-14  Score=109.48  Aligned_cols=108  Identities=25%  Similarity=0.293  Sum_probs=94.5

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHH
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  231 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a  231 (369)
                      ++.+++++.++.++++.|.+.+++++||++ +|+++|+++.+|++ .+...... ...++.++|.+++.++++++++.++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~-~~~~~~~~-~~~~v~~~~~~~~~~v~~~~~l~~~   79 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDIL-DLDLFESF-LEKKVFNIVSQDVFYVNEEDTIDEA   79 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhH-HHHhhccc-ccCcHHHHhcCCcEEEcCCCcHHHH
Confidence            467899999999999999999999999998 79999999999997 44332211 1457888998899999999999999


Q ss_pred             HHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       232 ~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      ++.|.+++.+.+||+|+ |+++|+||..|+++
T Consensus        80 ~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~  110 (111)
T cd04626          80 LDIMREKQIGRLPVVDD-NKLIGVVRTKDILD  110 (111)
T ss_pred             HHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence            99999999999999997 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.57  E-value=6.7e-14  Score=107.72  Aligned_cols=108  Identities=23%  Similarity=0.381  Sum_probs=96.1

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHH
Q 017536          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  231 (369)
Q Consensus       152 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a  231 (369)
                      +++.+++.+.++.++.+.|.+.+++++||+++++++|+++..|+. +......  ...++.++|.+++.++++++++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~dl~-~~~~~~~--~~~~~~~~~~~~~~~v~~~~~l~~~   78 (110)
T cd04595           2 SPVKTVRPEATIEEARELLLRYGHTALPVVEGGRVVGIISRRDVE-KALRHGL--GHAPVKDYMSTDVVTVPPDTPLSEV   78 (110)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeCCEEEEEEEHHHHH-HHHhccc--ccCcHHHHhcCCCEEECCCCcHHHH
Confidence            357889999999999999998899999999889999999999997 5443332  3568899999999999999999999


Q ss_pred             HHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       232 ~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      ++.|.+++.+.+||+| +|+++|+||..|+++
T Consensus        79 ~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~  109 (110)
T cd04595          79 QELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR  109 (110)
T ss_pred             HHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence            9999999999999999 899999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.57  E-value=3.3e-14  Score=113.40  Aligned_cols=109  Identities=28%  Similarity=0.356  Sum_probs=94.4

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccc--------------------ccc
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADS--------------------TLV  211 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~--------------------~~v  211 (369)
                      ++.+++++.++.++++.|.+.+++++||++ +++++|+++..|++ ++.........                    .++
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLI-RKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKV   80 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHH-HHHhccCCcccccccccccccchHHHHHHcCCCH
Confidence            467899999999999999999999999998 78999999999997 44433221111                    278


Q ss_pred             ccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       212 ~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      .++|.+++.++++++++.++++.|.+.+.+.+||+|+ |+++|++|..|+++
T Consensus        81 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~  131 (132)
T cd04636          81 EEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR  131 (132)
T ss_pred             HHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence            8889888999999999999999999999999999998 99999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.56  E-value=4.5e-14  Score=111.65  Aligned_cols=111  Identities=19%  Similarity=0.290  Sum_probs=91.1

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHH-----HHhcCCCccccccccccccCCcee----
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMR-----VISQNLPADSTLVEKVMTPNPECA----  222 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~-----~~~~~~~~~~~~v~~~m~~~~~~v----  222 (369)
                      ++.++.+++++.++++.|.+++.+.+||++ +|+++|+++.+|+...     ...........+++++|.+++..+    
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~   81 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKALDL   81 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccccH
Confidence            367899999999999999989999999998 7899999999999631     122111222467899997655433    


Q ss_pred             --cCCCCHHHHHHHHHhCCCceeeEEcCC-CcEEEEEeHHHHHH
Q 017536          223 --TIDTPIVDALHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITH  263 (369)
Q Consensus       223 --~~~~~l~~a~~~~~~~~~~~l~Vvd~~-g~~~Givt~~di~~  263 (369)
                        .+++++.++++.|.+++.+++||+|++ |+++|+||..|+++
T Consensus        82 ~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          82 EELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             HHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence              368999999999999999999999986 79999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.56  E-value=3.7e-14  Score=136.18  Aligned_cols=136  Identities=25%  Similarity=0.295  Sum_probs=111.8

Q ss_pred             CCCCCChhhHHHHH-HHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeC----CEEEEEeehHHHH
Q 017536          122 GTSISGPNTFIETL-RERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDIL  196 (369)
Q Consensus       122 g~~~~~~~~~~~~~-~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~----~~~~Giit~~dll  196 (369)
                      |.++++.+...+.. .+...-+..++.|.  .+++++++++++.+++++|.+++++.+||+++    ++++|++|.+|+.
T Consensus        75 glGvi~~~~~~e~~~~~v~kvk~~e~g~i--~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~  152 (495)
T PTZ00314         75 GIGVIHNNCSIEEQVEEVRKVKRFENGFI--MDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDID  152 (495)
T ss_pred             CeEEecCCCCHHHHHHHHhhccccccccc--cCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHh
Confidence            66666655333333 33333344667777  67899999999999999999999999999984    7999999999994


Q ss_pred             HHHHhcCCCcccccccccccc--CCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHH
Q 017536          197 MRVISQNLPADSTLVEKVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (369)
Q Consensus       197 ~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~  265 (369)
                       . ..    ....++.++|++  +++++++++++.+++++|.+++.+.+||+|++|+++|+||++||++..
T Consensus       153 -~-~~----~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~  217 (495)
T PTZ00314        153 -F-VK----DKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR  217 (495)
T ss_pred             -h-cc----cCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcc
Confidence             2 11    125689999987  789999999999999999999999999999999999999999999864

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.56  E-value=4.3e-14  Score=134.93  Aligned_cols=116  Identities=29%  Similarity=0.359  Sum_probs=103.5

Q ss_pred             CCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-C---CEEEEEeehHHHHHHHHhcCCCccccccccccc-
Q 017536          142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E---NKPRGILTSKDILMRVISQNLPADSTLVEKVMT-  216 (369)
Q Consensus       142 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~---~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~-  216 (369)
                      .+.++.|.  +++++++++.++.++++.|.+++++++||++ +   ++++|++|.+|++ ...  .   ...++.++|. 
T Consensus        80 k~~~~~~~--~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~-~~~--~---~~~~V~dvm~~  151 (450)
T TIGR01302        80 KRAENGII--SDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIR-FVK--D---KGKPVSEVMTR  151 (450)
T ss_pred             ccccCcee--cCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHh-hhh--c---CCCCHHHhhCC
Confidence            35677787  5799999999999999999999999999999 5   6999999999996 321  1   2568999998 


Q ss_pred             cCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHH
Q 017536          217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (369)
Q Consensus       217 ~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~  265 (369)
                      .+++++++++++.++++.|.+++.+.+||+|++|+++|+||.+||++..
T Consensus       152 ~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~  200 (450)
T TIGR01302       152 EEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRR  200 (450)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcc
Confidence            4899999999999999999999999999999999999999999999875

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.56  E-value=3.4e-14  Score=110.06  Aligned_cols=110  Identities=25%  Similarity=0.346  Sum_probs=94.7

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcC-CCccccccccccccCCceecCCCCHHH
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN-LPADSTLVEKVMTPNPECATIDTPIVD  230 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~-~~~~~~~v~~~m~~~~~~v~~~~~l~~  230 (369)
                      ++.+++++.++.++.+.|.+.+.+.+||++ +++++|+++.+|+++.+.... ......++.++|.+++.++++++++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~   81 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSIVD   81 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCcHHH
Confidence            467889999999999999988889999998 789999999999974333221 111246788999888999999999999


Q ss_pred             HHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       231 a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      +++.|.+++.+++||+|+ |+++|+||..|+++
T Consensus        82 ~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  113 (114)
T cd04629          82 LAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR  113 (114)
T ss_pred             HHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence            999999999999999997 99999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.56  E-value=7.3e-14  Score=106.72  Aligned_cols=103  Identities=23%  Similarity=0.289  Sum_probs=92.1

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHH
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  231 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a  231 (369)
                      ++++++++.++.++++.|.+.+.+.+||++ +|+++|+++..|++ +..       ..++.++|.+.+.++++++++.++
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~   73 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAA-RAS-------GGCCGDHAEPFKVTVSVDDDLRIV   73 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHH-Hhc-------ccchhhhcccCCEEECCCCCHHHH
Confidence            477889999999999999999999999998 79999999999997 431       124778888788899999999999


Q ss_pred             HHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       232 ~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      ++.|.+++...+||+|++|+++|+||..|+++
T Consensus        74 ~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          74 LSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD  105 (106)
T ss_pred             HHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            99999999999999999899999999999975

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.56  E-value=8.7e-14  Score=106.76  Aligned_cols=106  Identities=25%  Similarity=0.339  Sum_probs=94.4

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHH
Q 017536          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD  230 (369)
Q Consensus       152 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~  230 (369)
                      .++.+++++.++.++.+.|.+.++.++||++ +++++|+++..|++ .....     ..++.++|.+.+.++++++++.+
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~-~~~~~-----~~~v~~~~~~~~~~v~~~~~~~~   75 (109)
T cd04583           2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLE-QAYKE-----AKSLEDIMLEDVFTVQPDASLRD   75 (109)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHH-HHhhc-----CCcHhHhhcCCceEECCCCcHHH
Confidence            3577899999999999999999999999998 68999999999996 43321     34688899889999999999999


Q ss_pred             HHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       231 a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      +++.|.+.+.+++||+|++|+++|++|.+|+++
T Consensus        76 ~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~  108 (109)
T cd04583          76 VLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD  108 (109)
T ss_pred             HHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence            999999999999999999999999999999975

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.56  E-value=9.5e-14  Score=106.91  Aligned_cols=109  Identities=32%  Similarity=0.359  Sum_probs=95.3

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHHH
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  232 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~  232 (369)
                      ++..+++++++.++++.|.+.+.+.+||+++++++|+++.+|++ +....... ...++.++|.+++.++.+++++.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~-~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~   79 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDDGRLVGIVTLADIR-RVPAEGRE-ATVLVGDVMTRDPVTASPDETLRDAL   79 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEeeCCeEEEEEEHHHHH-HHHhcCcc-cccCHHHhccCCCeEECCCCCHHHHH
Confidence            47789999999999999999899999999889999999999997 44433221 12367888989999999999999999


Q ss_pred             HHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       233 ~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      +.|.+++.+.+||+|++|+++|+||..|+++
T Consensus        80 ~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  110 (111)
T cd04612          80 KRMAERDIGRLPVVDDSGRLVGIVSRSDLLR  110 (111)
T ss_pred             HHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence            9999999999999998899999999999975

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.55  E-value=8.4e-14  Score=107.00  Aligned_cols=108  Identities=24%  Similarity=0.313  Sum_probs=91.8

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHHH
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  232 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~  232 (369)
                      ++.++++++++.++.+.|.+.+.+++||+++++++|+++.+|+. +...........++.++|.+++.++++++++.+++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~   80 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDDGRVVGSIDESDLL-DALIEGKAKFSLPVREVMGEPLPTVDPDAPIEELS   80 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeCCeeEEEEeHHHHH-HHHhccccccCcCHHHHhcCCCceeCCCCcHHHHH
Confidence            46788999999999999999999999999889999999999997 54433322224578889988899999999999999


Q ss_pred             HHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       233 ~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      +.|.+ . ..+||+|++|+++|+||.+|+++
T Consensus        81 ~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~  109 (110)
T cd04609          81 ELLDR-G-NVAVVVDEGGKFVGIITRADLLK  109 (110)
T ss_pred             HHHHh-C-CceeEEecCCeEEEEEeHHHhhc
Confidence            99988 3 34789998999999999999986

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.55  E-value=4.2e-14  Score=113.22  Aligned_cols=110  Identities=27%  Similarity=0.409  Sum_probs=95.1

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCC----------------------Cccc
Q 017536          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL----------------------PADS  208 (369)
Q Consensus       152 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~----------------------~~~~  208 (369)
                      .++.+++++.++.++++.|.+.++.++||++ +++++|+++..|++ +......                      ....
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
T cd04586           2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLL-RRAELGTERRRARWLDLLAGAEELAAAFVRSHG   80 (135)
T ss_pred             CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHH-HHhcccCcchhhhHHHHhcchHHHHHHHHHhcC
Confidence            4578899999999999999999999999999 78999999999997 3322110                      0123


Q ss_pred             cccccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          209 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       209 ~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      .++.++|.+++.++++++++.++++.|.+.+.+.+||+| +|+++|+||..|+++
T Consensus        81 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~  134 (135)
T cd04586          81 RKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR  134 (135)
T ss_pred             CCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence            568899988899999999999999999999999999999 899999999999985

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.55  E-value=8e-14  Score=110.48  Aligned_cols=110  Identities=23%  Similarity=0.233  Sum_probs=93.5

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcC-------------CCccccccccccccC
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN-------------LPADSTLVEKVMTPN  218 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~-------------~~~~~~~v~~~m~~~  218 (369)
                      ++.+++++.++.++++.|.+.+.+.+||++ +++++|++|.+|++ .++...             ......++.++|.++
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIV-DFVVRDRDKARTGDRSGEKERMLDLPVYDAMSSP   80 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHH-HHHhhhhhhcchhhhhhhhhhhccCcHHHHhcCC
Confidence            467889999999999999999999999998 78999999999997 433211             001235688999888


Q ss_pred             CceecCCCCHHHHHHHHHhCCCceeeEEc--CCCcEEEEEeHHHHHH
Q 017536          219 PECATIDTPIVDALHIMHDGKFLHLPVVD--RDGDVVDVVDVIHITH  263 (369)
Q Consensus       219 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd--~~g~~~Givt~~di~~  263 (369)
                      ++++++++++.++++.|.+.+.+.+||++  ++|+++|+||..|+++
T Consensus        81 ~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          81 VITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             CceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence            99999999999999999999999999984  4699999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.54  E-value=5.9e-14  Score=110.12  Aligned_cols=111  Identities=28%  Similarity=0.334  Sum_probs=94.8

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcC---CC-----ccccccccccccCCceec
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN---LP-----ADSTLVEKVMTPNPECAT  223 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~---~~-----~~~~~v~~~m~~~~~~v~  223 (369)
                      ++.++.++.++.++++.|.+.+++++||++ +|+++|+++..|+++......   ..     ....++.++|.+++.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYSVT   81 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCeeEC
Confidence            477899999999999999989999999999 799999999999973211110   00     124567889988899999


Q ss_pred             CCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          224 IDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       224 ~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      +++++.++++.|.+++.+.+||+|++|+++|++|..|+++
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~  121 (122)
T cd04635          82 PDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK  121 (122)
T ss_pred             CCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence            9999999999999999999999998899999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.54  E-value=1.5e-13  Score=107.65  Aligned_cols=110  Identities=25%  Similarity=0.361  Sum_probs=95.2

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCC----------ccccccccccccCCcee
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLP----------ADSTLVEKVMTPNPECA  222 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~----------~~~~~v~~~m~~~~~~v  222 (369)
                      ++.+++++.++.++++.|.+.+...+||+++++++|+++..|++ ........          ....++.++|.+++.++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~i~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDRGKLVGIVTDRDLK-LASPSKATTLDIWELYYLLSKIKVSDIMTRDPITV   80 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecCCeEEEEEeHHHHH-HhhhcccccccchhhhhhhcccCHHHhccCCCeEe
Confidence            46788999999999999999999999999989999999999997 44322110          01356788998899999


Q ss_pred             cCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          223 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       223 ~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      ++++++.+++..|.+.+.+.+||+|++|+++|+||..|+++
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~  121 (122)
T cd04585          81 SPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR  121 (122)
T ss_pred             CCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence            99999999999999999999999998899999999999986

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.54  E-value=8.4e-14  Score=137.81  Aligned_cols=126  Identities=21%  Similarity=0.228  Sum_probs=108.2

Q ss_pred             HhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccc
Q 017536          138 RMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT  216 (369)
Q Consensus       138 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~  216 (369)
                      .+...+++++|.  +++.++++++++.++.+.|.+++.+.+||+| +++++|+++.+|+.+.... .......++.++|.
T Consensus       443 ~L~~~~V~dim~--~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~-~~~~~~~~v~dim~  519 (574)
T PRK01862        443 RLRTTQMRELIQ--PAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLD-KRDTTDKTAADYAH  519 (574)
T ss_pred             HHhhCcHHHHhc--CCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhc-ccccccchHHHhcc
Confidence            455678899998  5678899999999999999999999999999 7899999999999733332 22222467899999


Q ss_pred             cCCceecCCCCHHHHHHHHHhCCCceeeEEcCC--CcEEEEEeHHHHHHHHH
Q 017536          217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRD--GDVVDVVDVIHITHAAV  266 (369)
Q Consensus       217 ~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~--g~~~Givt~~di~~~~~  266 (369)
                      +++.++++++++.++++.|.+++.+.+||+|++  |+++|+||+.|+++++.
T Consensus       520 ~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~  571 (574)
T PRK01862        520 TPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR  571 (574)
T ss_pred             CCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence            999999999999999999999999999999976  47999999999998654

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.53  E-value=1.9e-13  Score=104.56  Aligned_cols=105  Identities=27%  Similarity=0.385  Sum_probs=93.9

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHH
Q 017536          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  231 (369)
Q Consensus       152 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a  231 (369)
                      +++++++.+.++.++++.|.+.+.+.+||+++++++|+++..|++ ..      ....++.++|..++.++++++++.++
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~g~v~~~~l~-~~------~~~~~~~~~~~~~~~~v~~~~~l~~~   74 (107)
T cd04610           2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDNGKVVGIVSARDLL-GK------DPDETVEEIMSKDLVVAVPEMDIMDA   74 (107)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhh-cc------CccccHHHhCCCCCeEECCCCCHHHH
Confidence            457889999999999999988888899999889999999999996 31      11457889998889999999999999


Q ss_pred             HHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       232 ~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      ++.|.+++.+.+||+|++|+++|+|+..|+++
T Consensus        75 ~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~  106 (107)
T cd04610          75 ARVMFRTGISKLPVVDENNNLVGIITNTDVIR  106 (107)
T ss_pred             HHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence            99999999999999999999999999999985

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.53  E-value=1.4e-13  Score=131.96  Aligned_cols=107  Identities=27%  Similarity=0.287  Sum_probs=95.3

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEeC----CEEEEEeehHHHHHHHHhcCCCcccccccccccc--CCceecCCC
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDT  226 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~----~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~  226 (369)
                      +++++++++++.++++.|.+++++.+||+++    ++++|+||.+|+. .. .   ...+.+++++|++  +++++++++
T Consensus       106 ~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr-~~-~---~~~~~~V~dIMt~~~~~itv~~d~  180 (502)
T PRK07107        106 SDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYR-IS-R---MSLDTKVKDFMTPFEKLVTANEGT  180 (502)
T ss_pred             CCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhh-cc-c---cCCCCCHHHHhCCCCCeEEECCCC
Confidence            3578999999999999999999999999984    7999999999994 32 1   1235789999986  678999999


Q ss_pred             CHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHH
Q 017536          227 PIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (369)
Q Consensus       227 ~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~  264 (369)
                      ++.+|+++|.+++++.+||+|++|+++|+||..|+++.
T Consensus       181 ~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~  218 (502)
T PRK07107        181 TLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSH  218 (502)
T ss_pred             cHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhc
Confidence            99999999999999999999999999999999999984

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.53  E-value=1.6e-13  Score=103.36  Aligned_cols=91  Identities=20%  Similarity=0.278  Sum_probs=82.4

Q ss_pred             CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-C-CeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCC
Q 017536           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (369)
Q Consensus        50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~-~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  127 (369)
                      +++++++++++.+|.+.|.+++++++||+| + |+++|+++..|+...                                
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~--------------------------------   49 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILI--------------------------------   49 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhh--------------------------------
Confidence            467899999999999999999999999998 4 799999999998643                                


Q ss_pred             hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-C-CEEEEEeehHHHH
Q 017536          128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDIL  196 (369)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~-~~~~Giit~~dll  196 (369)
                                              ..+.++.+++++.+|++.|.+++.+++||++ + |+++|++|.+|++
T Consensus        50 ------------------------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~   96 (98)
T cd04618          50 ------------------------LRLVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRIL   96 (98)
T ss_pred             ------------------------eeeEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhh
Confidence                                    0167899999999999999999999999999 5 8999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.53  E-value=1.3e-13  Score=108.04  Aligned_cols=110  Identities=32%  Similarity=0.356  Sum_probs=94.2

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCC---------CccccccccccccCCceec
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNL---------PADSTLVEKVMTPNPECAT  223 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~---------~~~~~~v~~~m~~~~~~v~  223 (369)
                      ++.++++++++.++.+.|.+.+.+++||+++|+++|+++..|+++.......         .....++.++|..++.+++
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEGGKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVITIE   81 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEECCEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccCCceEEC
Confidence            4678999999999999999999999999998999999999999733221111         1124578888988999999


Q ss_pred             CCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          224 IDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       224 ~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      +++++.++++.|.+.+.+.+||+|+ |+++|++|..|+++
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~  120 (121)
T cd04633          82 PDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR  120 (121)
T ss_pred             CCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence            9999999999999999999999997 99999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.53  E-value=2.1e-13  Score=103.94  Aligned_cols=103  Identities=27%  Similarity=0.379  Sum_probs=92.3

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHHH
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  232 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~  232 (369)
                      ++.++++++++.++++.|.+++.+.+||+++++++|+++.+|++ ...      ...++.++|.+++.++++++++.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~Giv~~~~l~-~~~------~~~~~~~~~~~~~~~v~~~~~l~~~~   74 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVEDGKLVGIITSRDVR-RAH------PNRLVADAMTREVVTISPEASLLEAK   74 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEehHHhh-ccc------ccCCHHHHccCCCEEECCCCCHHHHH
Confidence            46778999999999999998999999999989999999999996 321      13468899988999999999999999


Q ss_pred             HHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       233 ~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      +.|.+++...+||+|+ |+++|+||..|++.
T Consensus        75 ~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~~  104 (105)
T cd04599          75 RLMEEKKIERLPVLRE-RKLVGIITKGTIAL  104 (105)
T ss_pred             HHHHHcCCCEeeEEEC-CEEEEEEEHHHhcc
Confidence            9999999999999997 99999999999874

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.53  E-value=1.2e-13  Score=108.36  Aligned_cols=110  Identities=23%  Similarity=0.390  Sum_probs=95.1

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCC--------C--ccccccccccccCCcee
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNL--------P--ADSTLVEKVMTPNPECA  222 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~--------~--~~~~~v~~~m~~~~~~v  222 (369)
                      ++.+++++.++.++.+.|.+.+++++||+++|+++|+++..|+++ .+....        +  ....++.++|.++++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVEDNELVGVISDRDYLK-AISPFLGTAGETEKDLATLNRRAHQIMTRDPITV   80 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeCCeEEEEEEHHHHHH-HHHHHhccccchHHHHHHHHhHHHHhhcCCCeee
Confidence            477899999999999999999999999999899999999999973 332210        0  01346888998899999


Q ss_pred             cCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          223 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       223 ~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      ++++++.++++.|.+++...+||+|++|+++|++|..|+++
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~  121 (122)
T cd04637          81 SPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK  121 (122)
T ss_pred             CCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence            99999999999999999999999998899999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.52  E-value=3.2e-13  Score=130.34  Aligned_cols=172  Identities=21%  Similarity=0.261  Sum_probs=130.6

Q ss_pred             ccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHh
Q 017536           42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH  120 (369)
Q Consensus        42 ~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (369)
                      .+.++|.++++++++++++.++++.|.+++++.+||+| +++++|+++.+|+....                        
T Consensus        88 ~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~------------------------  143 (486)
T PRK05567         88 RSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFET------------------------  143 (486)
T ss_pred             hhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcc------------------------
Confidence            46788999999999999999999999999999999998 79999999999985320                        


Q ss_pred             cCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHH
Q 017536          121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRV  199 (369)
Q Consensus       121 ~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~  199 (369)
                                        ....++.++|.+ .+++++++++++.++++.|.+++.+.+||++ +++++|++|.+|+++..
T Consensus       144 ------------------~~~~~V~dim~~-~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~  204 (486)
T PRK05567        144 ------------------DLSQPVSEVMTK-ERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAE  204 (486)
T ss_pred             ------------------cCCCcHHHHcCC-CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhh
Confidence                              012346677762 4689999999999999999999999999999 89999999999998443


Q ss_pred             HhcCC--C-ccccccccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcC-CCcEEEEEeHHHHHHH
Q 017536          200 ISQNL--P-ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDR-DGDVVDVVDVIHITHA  264 (369)
Q Consensus       200 ~~~~~--~-~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~-~g~~~Givt~~di~~~  264 (369)
                      .....  + .....+...|..+     +  .-.+..+.|.+.+.+.+ |+|. +|+..|+++..+.++.
T Consensus       205 ~~p~a~~d~~g~l~V~aai~~~-----~--~~~e~a~~L~~agvdvi-vvD~a~g~~~~vl~~i~~i~~  265 (486)
T PRK05567        205 EFPNACKDEQGRLRVGAAVGVG-----A--DNEERAEALVEAGVDVL-VVDTAHGHSEGVLDRVREIKA  265 (486)
T ss_pred             hCCCcccccCCCEEEEeecccC-----c--chHHHHHHHHHhCCCEE-EEECCCCcchhHHHHHHHHHh
Confidence            22111  0 0122344444322     2  12778888888999855 5554 6888787766666654

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.51  E-value=2.2e-13  Score=104.71  Aligned_cols=106  Identities=32%  Similarity=0.438  Sum_probs=92.4

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecC-CCCHH
Q 017536          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATI-DTPIV  229 (369)
Q Consensus       152 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~-~~~l~  229 (369)
                      +++.+++++.++.++.+.|.+.+.+.+||++ +|+++|+++.++++ ...     ....++.++|...+.++.+ ++++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~-~~~-----~~~~~v~~~~~~~~~~~~~~~~~l~   75 (110)
T cd04601           2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLR-FET-----DLDKPVSEVMTPENLLTTVEGTSLE   75 (110)
T ss_pred             CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHee-ecc-----cCCCCHHHhcccCceEEecCCCCHH
Confidence            3577899999999999999999999999998 78999999999985 221     1245788999777777777 99999


Q ss_pred             HHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          230 DALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       230 ~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      ++++.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus        76 ~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~  109 (110)
T cd04601          76 EALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK  109 (110)
T ss_pred             HHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence            9999999999999999999999999999999985

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.51  E-value=3.1e-13  Score=104.78  Aligned_cols=106  Identities=27%  Similarity=0.342  Sum_probs=91.7

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCCceEEEEeC----CEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecC--C
Q 017536          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATI--D  225 (369)
Q Consensus       152 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~----~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~--~  225 (369)
                      .++.++++++++.++++.|.+.+.+++||+++    ++++|+++.+|++ ... .    ...++.++|.+++.++..  +
T Consensus         2 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~-~~~-~----~~~~v~~~~~~~~~~~~~~~~   75 (114)
T cd04602           2 TDPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDID-FLT-D----SETPLSEVMTPREVLVVAPTG   75 (114)
T ss_pred             CCCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhh-hhh-c----cCCCHHHhcCCCceEEECCCC
Confidence            35778899999999999999889899999983    7999999999985 322 1    134688999877777766  9


Q ss_pred             CCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          226 TPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       226 ~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      +++.++++.|.+++.+.+||+|++|+++|+||..|+++
T Consensus        76 ~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~  113 (114)
T cd04602          76 ITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK  113 (114)
T ss_pred             CCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence            99999999999999999999999999999999999875

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.51  E-value=2.6e-13  Score=130.32  Aligned_cols=113  Identities=27%  Similarity=0.263  Sum_probs=100.2

Q ss_pred             cccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeC----CEEEEEeehHHHHHHHHhcCCCccccccccccccC--Cc
Q 017536          147 IIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN--PE  220 (369)
Q Consensus       147 im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~----~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~--~~  220 (369)
                      .|.  ++++++++++++.++++.|.+++++.+||+++    ++++|++|.+|+. ...     ....++.++|+++  ++
T Consensus       105 gmi--~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~-~v~-----~~~~~V~eIMt~~~~lv  176 (505)
T PLN02274        105 GFV--SDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWD-FVN-----DRETKLSEVMTSDDDLV  176 (505)
T ss_pred             ccc--CCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHh-hcc-----ccCCcHHHHhccCCCcE
Confidence            355  57999999999999999999999999999984    7999999999994 322     1257899999876  78


Q ss_pred             eecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHH
Q 017536          221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (369)
Q Consensus       221 ~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~  267 (369)
                      ++++++++.+|++.|.+++.+.+||+|++|+++|+||+.||++....
T Consensus       177 tv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~  223 (505)
T PLN02274        177 TAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY  223 (505)
T ss_pred             EECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999987653

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.50  E-value=3.2e-13  Score=104.24  Aligned_cols=106  Identities=15%  Similarity=0.107  Sum_probs=89.6

Q ss_pred             CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017536           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (369)
Q Consensus        50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  128 (369)
                      +++++.+++++.+|++.|.+++.+.+||+| +|+++|+++..|+.....                               
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~-------------------------------   50 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGP-------------------------------   50 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhcc-------------------------------
Confidence            467889999999999999999999999998 689999999999864200                               


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                              +.....++.++|.  .++.++.+++++.++++.|.+++.+.+||++ +|+++|++|.+|++
T Consensus        51 --------~~~~~~~v~~~~~--~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~  109 (111)
T cd04603          51 --------NDYETLKVCEVYI--VPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELL  109 (111)
T ss_pred             --------ccccccChhheee--cCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhh
Confidence                    0011234777886  5678999999999999999999999999998 69999999999996

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.50  E-value=2.1e-13  Score=104.82  Aligned_cols=101  Identities=21%  Similarity=0.276  Sum_probs=88.8

Q ss_pred             eCCCCcHHHHHHHHHHcC-----CceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHH
Q 017536          157 ISPTDTVLMATKKMLELR-----LSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD  230 (369)
Q Consensus       157 v~~~~~l~~~~~~m~~~~-----~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~  230 (369)
                      +.+++++.++++.|.+++     +..+||++ +++++|+++.+|++ +.     . ...++.++|.+++.++++++++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~-~~-----~-~~~~v~~~~~~~~~~i~~~~~~~~   74 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLL-LA-----D-PDTPVSDIMDTDVISVSADDDQEE   74 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHh-cC-----C-CcchHHHHhCCCCeEEcCCCCHHH
Confidence            568899999999998777     46889998 78999999999996 31     1 245788999888999999999999


Q ss_pred             HHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHH
Q 017536          231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (369)
Q Consensus       231 a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~  264 (369)
                      +++.|...+.+.+||+|++|+++|+||..|++++
T Consensus        75 ~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~  108 (109)
T cd04606          75 VARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV  108 (109)
T ss_pred             HHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence            9999999999999999989999999999999974

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.50  E-value=5.7e-13  Score=103.57  Aligned_cols=109  Identities=34%  Similarity=0.444  Sum_probs=95.9

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHH
Q 017536          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  231 (369)
Q Consensus       152 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a  231 (369)
                      .+++++.++.++.++...|.++++..+||++.++++|++|.+|++ +........ ..++.++|.++++++.++.++.++
T Consensus         7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~~l~Giit~~di~-~~~~~~~~~-~~~v~~v~~~~~~~~~~~~~~~~~   84 (117)
T COG0517           7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDDGKLVGIITERDIL-RALAAGGKR-LLPVKEVMTKPVVTVDPDTPLEEA   84 (117)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHH-HHHhccCCc-cccHHHhccCCcEEECCCCCHHHH
Confidence            578999999999999999999999999999877999999999998 444333221 126899998899999999999999


Q ss_pred             HHHHHh-CCCceeeEEcCCC-cEEEEEeHHHHH
Q 017536          232 LHIMHD-GKFLHLPVVDRDG-DVVDVVDVIHIT  262 (369)
Q Consensus       232 ~~~~~~-~~~~~l~Vvd~~g-~~~Givt~~di~  262 (369)
                      ++.|.+ ++.+.+||+|+++ +++|++|..|++
T Consensus        85 ~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~  117 (117)
T COG0517          85 LELMVERHKIRRLPVVDDDGGKLVGIITLSDIL  117 (117)
T ss_pred             HHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence            999999 7999999999886 999999999973

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.50  E-value=3.6e-13  Score=129.97  Aligned_cols=116  Identities=27%  Similarity=0.332  Sum_probs=104.2

Q ss_pred             CCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccc-cCC
Q 017536          142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT-PNP  219 (369)
Q Consensus       142 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~-~~~  219 (369)
                      ..++++|.  .++.+++++.++.++++.|.+++++++||++ +++++|++|.+|+. ...    . ...++.++|. +++
T Consensus        87 k~~~dim~--~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~-~~~----~-~~~~V~dim~~~~~  158 (486)
T PRK05567         87 KRSESGVV--TDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVR-FET----D-LSQPVSEVMTKERL  158 (486)
T ss_pred             hhhhhccc--CCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhh-hcc----c-CCCcHHHHcCCCCC
Confidence            34678887  6899999999999999999999999999999 89999999999995 321    1 2457999998 788


Q ss_pred             ceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHH
Q 017536          220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (369)
Q Consensus       220 ~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~  265 (369)
                      +++++++++.++++.|.+++.+.+||+|++|+++|+||..||++++
T Consensus       159 v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~  204 (486)
T PRK05567        159 VTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAE  204 (486)
T ss_pred             EEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhh
Confidence            9999999999999999999999999999999999999999999875

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.50  E-value=1.1e-12  Score=125.03  Aligned_cols=189  Identities=16%  Similarity=0.169  Sum_probs=136.5

Q ss_pred             EEEEcCCCcEEEEEeHHHHHHHHHhcc------C---------CCcccccccccccCCeEEeCCCcHHHHHHHHHhCCCe
Q 017536            9 LLLTDSNALLCGILTDKDIATRVIARE------L---------NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFR   73 (369)
Q Consensus         9 ~~V~d~~~~~~Givt~~Di~~~~~~~~------~---------~~~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~   73 (369)
                      +|++...   ..-+|+.+++..+...+      .         .+...++.++|.++++++.+++++.+|++.|.+++++
T Consensus        45 ~Pi~sa~---Mdtvt~~~MAiaLAr~GGiGvih~nl~~~~q~~~l~~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s  121 (479)
T PRK07807         45 IPLVVAN---MTAVAGRRMAETVARRGGLVVLPQDIPIDVVAEVVAWVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHG  121 (479)
T ss_pred             cceeecC---CcchhHHHHHHHHHHCCCceEeeCCCCHHHHHHHHhhcccccccccCCeEECCCCCHHHHHHHHHhcCCc
Confidence            5666432   45677777765555544      2         2335678899999999999999999999999999999


Q ss_pred             EeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCC
Q 017536           74 HLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKS  152 (369)
Q Consensus        74 ~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~  152 (369)
                      .+||+| +++++|+++.+|+...                                           ....+++++|+  .
T Consensus       122 ~l~VVD~~gklvGIVT~rDL~~~-------------------------------------------~~~~~V~diMt--~  156 (479)
T PRK07807        122 AVVVVDEEGRPVGVVTEADCAGV-------------------------------------------DRFTQVRDVMS--T  156 (479)
T ss_pred             eEEEECCCCeEEEEEeHHHHhcC-------------------------------------------ccCCCHHHhcc--C
Confidence            999998 6899999999997321                                           01134778887  6


Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHH
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  231 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a  231 (369)
                      +++++++++++.++++.|.+++...+||+| +++++|+||.+|++ +.......  ...-...+.....  .......+.
T Consensus       157 ~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl-~~~~~~~~--~~~~g~l~V~aav--~~~~~~~~~  231 (479)
T PRK07807        157 DLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGAL-RATIYTPA--VDAAGRLRVAAAV--GINGDVAAK  231 (479)
T ss_pred             CceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHH-HHhhCCch--hhhhhccchHhhh--ccChhHHHH
Confidence            799999999999999999999999999999 79999999999998 43322110  0000011111111  223346788


Q ss_pred             HHHHHhCCCceeeEEcC-CCc
Q 017536          232 LHIMHDGKFLHLPVVDR-DGD  251 (369)
Q Consensus       232 ~~~~~~~~~~~l~Vvd~-~g~  251 (369)
                      +..|.+.+.+. +++|- +|+
T Consensus       232 a~~Lv~aGvd~-i~~D~a~~~  251 (479)
T PRK07807        232 ARALLEAGVDV-LVVDTAHGH  251 (479)
T ss_pred             HHHHHHhCCCE-EEEeccCCc
Confidence            88888888876 56664 444

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.49  E-value=5e-13  Score=101.83  Aligned_cols=100  Identities=26%  Similarity=0.241  Sum_probs=89.3

Q ss_pred             eEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHHHHH
Q 017536          155 VTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHI  234 (369)
Q Consensus       155 ~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~  234 (369)
                      .+++++.++.++++.|.+.+.+++||+++++++|+++.+|++ ...       ..++.++|.+.+.+++++.++.++++.
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~-~~~-------~~~~~~~~~~~~~~v~~~~~l~~a~~~   75 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDYNKFLGAVYLKDIE-NAT-------YGDVVDYIVRGIPYVRLTSTAEEAWEV   75 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHHh-hhc-------ccchhhhhhcCCcEEcCCCCHHHHHHH
Confidence            467899999999999999999999999889999999999996 321       235777888889999999999999999


Q ss_pred             HHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          235 MHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       235 ~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      |.+++.+.+||+| +|+++|++|..|+++
T Consensus        76 ~~~~~~~~~~Vv~-~~~~iGvit~~dl~~  103 (104)
T cd04594          76 MMKNKTRWCPVVD-DGKFKGIVTLDSILD  103 (104)
T ss_pred             HHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence            9999999999998 699999999999975

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.49  E-value=3.8e-13  Score=128.78  Aligned_cols=120  Identities=19%  Similarity=0.240  Sum_probs=104.6

Q ss_pred             hCCCCccccccCCCceeEeCCCCcHHHHHHHHHH-----cCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccc
Q 017536          139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLE-----LRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVE  212 (369)
Q Consensus       139 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~-----~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~  212 (369)
                      +...+++++|+  +++.+++++.++.++++.|.+     .+...++|++ +++++|+++.+|++ ..    .  .+.+++
T Consensus       128 ~~e~tvg~iMt--~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl-~a----~--~~~~v~  198 (449)
T TIGR00400       128 YSDDSAGRIMT--IEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLI-LA----K--PEEILS  198 (449)
T ss_pred             CCcchHHHhCc--CceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHh-cC----C--CCCcHH
Confidence            34578999998  689999999999999999975     3456788888 78999999999996 21    1  245799


Q ss_pred             cccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHH
Q 017536          213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (369)
Q Consensus       213 ~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~  267 (369)
                      ++|.++++++++++++.+|++.|.+++...+||||++|+++|+||.+|+++.+..
T Consensus       199 ~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~  253 (449)
T TIGR00400       199 SIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQS  253 (449)
T ss_pred             HHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHh
Confidence            9999889999999999999999999999999999999999999999999987654

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.49  E-value=3.1e-13  Score=124.71  Aligned_cols=119  Identities=15%  Similarity=0.163  Sum_probs=100.8

Q ss_pred             ccccccccccc--CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 017536           39 EETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE  115 (369)
Q Consensus        39 ~~~~v~dim~~--~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~  115 (369)
                      ...+|+++|.+  +++++++++++.+|++.|.++++..+||++ +|+++|+++..|+.+....                 
T Consensus       200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~-----------------  262 (326)
T PRK10892        200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDM-----------------  262 (326)
T ss_pred             ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhc-----------------
Confidence            45679999997  899999999999999999999888888888 7999999999997642100                 


Q ss_pred             hHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHH
Q 017536          116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDI  195 (369)
Q Consensus       116 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dl  195 (369)
                            +.              .....+++++|.  +++.++.+++++.++++.|.+++.+++||+++++++|++|.+|+
T Consensus       263 ------~~--------------~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~lvGiit~~di  320 (326)
T PRK10892        263 ------GI--------------DLRQASIADVMT--PGGIRVRPGILAVDALNLMQSRHITSVLVADGDHLLGVLHMHDL  320 (326)
T ss_pred             ------CC--------------CcccCCHHHhcC--CCCEEECCCCCHHHHHHHHHHCCCcEEEEeeCCEEEEEEEhHHh
Confidence                  00              011245888998  57899999999999999999999999999998899999999999


Q ss_pred             H
Q 017536          196 L  196 (369)
Q Consensus       196 l  196 (369)
                      +
T Consensus       321 l  321 (326)
T PRK10892        321 L  321 (326)
T ss_pred             H
Confidence            7

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.48  E-value=8.5e-13  Score=101.32  Aligned_cols=110  Identities=34%  Similarity=0.440  Sum_probs=94.6

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHH
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  231 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a  231 (369)
                      ++.+++++.++.++.+.|.+.+.+.+||++ +++++|+++.+|++ .............+.++|..++.++++++++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLL-RALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEEA   80 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHH-HHHHhccCCccccHHHHhcCCceecCCCcCHHHH
Confidence            467789999999999999998999999998 68999999999997 4443332221223677888899999999999999


Q ss_pred             HHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       232 ~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      ++.|.+.+.+.+||+|++|+++|+++..|+++
T Consensus        81 ~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  112 (113)
T cd02205          81 AELMLEHGIRRLPVVDDEGRLVGIVTRSDILR  112 (113)
T ss_pred             HHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence            99999999999999999999999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.48  E-value=7.2e-13  Score=102.74  Aligned_cols=109  Identities=15%  Similarity=0.168  Sum_probs=90.3

Q ss_pred             CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017536           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (369)
Q Consensus        50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  128 (369)
                      .+.++.+++++.+|++.|.+++...+||+| +|+++|+++..++++.....                             
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~-----------------------------   52 (114)
T cd04619           2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRC-----------------------------   52 (114)
T ss_pred             ceEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhc-----------------------------
Confidence            366889999999999999999999999998 78999999999987542100                             


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                             .......++.++|.  .+++++.+++++.++++.|.+++..++||++ +|+++|+++.+|++
T Consensus        53 -------~~~~~~~~v~~~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~  112 (114)
T cd04619          53 -------GGPGCTAPVENVMT--RAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDAL  112 (114)
T ss_pred             -------CCCcccCCHHHHhc--CCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhc
Confidence                   00012234667776  5788999999999999999999999999998 78999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.47  E-value=6.1e-13  Score=104.10  Aligned_cols=109  Identities=25%  Similarity=0.320  Sum_probs=93.7

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCC---------CccccccccccccCCcee
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL---------PADSTLVEKVMTPNPECA  222 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~---------~~~~~~v~~~m~~~~~~v  222 (369)
                      ++.++++++++.++.+.|.+.+++++||++ +++++|+++..|++ +......         .....++.++|.++++++
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~i   80 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLR-DASPSPFTTLSEHELYLLLKMPVKEIMTKDVITV   80 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHH-HHhhhhcccchhhhhhhhcCcCHHHHhhCCCeEE
Confidence            467889999999999999999999999999 69999999999997 4332110         112456889998899999


Q ss_pred             cCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          223 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       223 ~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      ++++++.++++.|.+++...+||+|+ |+++|++|..|+++
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~  120 (121)
T cd04584          81 HPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR  120 (121)
T ss_pred             CCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence            99999999999999999999999986 99999999999985

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.46  E-value=3.4e-12  Score=118.41  Aligned_cols=192  Identities=22%  Similarity=0.295  Sum_probs=140.7

Q ss_pred             cCCeEEeCCCcHHHHHHHHHhCCCeEeeEee--CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCC
Q 017536           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSIS  126 (369)
Q Consensus        49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  126 (369)
                      ...+.++...++.+|+..+..++++..|+++  ...++|+++..|++..+........                      
T Consensus        76 ~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~~~~~~g~~~~~d~i~~~~~~~~~~~----------------------  133 (381)
T KOG1764|consen   76 SKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSKKQQFVGMLTITDFITVLLRYYKSKS----------------------  133 (381)
T ss_pred             ceeEEeeCCCcHHHHHHHHHhhceeeeccccCccceeEEEEEHHHHHHHHHHhhccCC----------------------
Confidence            4678899999999999999999999999998  5889999999999887654332100                      


Q ss_pred             ChhhHHHHHHH--HhCCCCcccc--ccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe--CCEEEEEeehHHHHHHHH
Q 017536          127 GPNTFIETLRE--RMFRPSLSTI--IPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVI  200 (369)
Q Consensus       127 ~~~~~~~~~~~--~~~~~~v~~i--m~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d--~~~~~Giit~~dll~~~~  200 (369)
                       ..+....+..  ......+..+  ....+.++.+.+..++.++...+.+++++++||.|  .+.+..++|.+-++ +++
T Consensus       134 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl-~~l  211 (381)
T KOG1764|consen  134 -SLDNIEVLEDSQLSKRREVECLLKETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRIL-KFL  211 (381)
T ss_pred             -cHHHHhhhhhhhccccchhhhhhccccCCCceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHH-HHH
Confidence             0000000100  0111111111  11113448899999999999999999999999998  67999999999998 444


Q ss_pred             hcCCCccccccccccc-----------cCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHH
Q 017536          201 SQNLPADSTLVEKVMT-----------PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (369)
Q Consensus       201 ~~~~~~~~~~v~~~m~-----------~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~  266 (369)
                      ......  .+...+|.           .+...+.+++++.+|+++|..+++..+||||+.|+.+|.++..|+.....
T Consensus       212 ~~~~~~--~~~~~~l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~  286 (381)
T KOG1764|consen  212 WLNGRL--LPLPSLLSKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAR  286 (381)
T ss_pred             HHhhcc--cccHHHhhCCHHHhCcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhh
Confidence            332221  11222221           25789999999999999999999999999999999999999999998543

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.46  E-value=4.7e-13  Score=120.12  Aligned_cols=112  Identities=27%  Similarity=0.361  Sum_probs=98.8

Q ss_pred             CCccccccCCCc-eeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCC
Q 017536          142 PSLSTIIPEKSK-VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  219 (369)
Q Consensus       142 ~~v~~im~~~~~-~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~  219 (369)
                      .+++++|.  ++ ++++++++++.++++.|.+.+.+++||++ +++++|+++.+|+. +....... ...+++++|.+++
T Consensus       155 ~~v~~im~--~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~-~~~~~~~~-~~~~v~~im~~~~  230 (268)
T TIGR00393       155 VKVKDLMQ--TTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLR-RALLGGGS-LKSEVRDFMTLGP  230 (268)
T ss_pred             hhHHHHhC--CCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHH-HHHhcCCc-ccCcHHHhCCCCC
Confidence            56889998  45 88999999999999999999999999999 78999999999997 54433222 2567999999999


Q ss_pred             ceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEe
Q 017536          220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVD  257 (369)
Q Consensus       220 ~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt  257 (369)
                      .++++++++.+|++.|.+++.+.+||+|++|+++|+|+
T Consensus       231 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~  268 (268)
T TIGR00393       231 KTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH  268 (268)
T ss_pred             eEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence            99999999999999999999999999999999999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=1.2e-12  Score=98.29  Aligned_cols=91  Identities=25%  Similarity=0.345  Sum_probs=82.7

Q ss_pred             CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017536           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (369)
Q Consensus        50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  128 (369)
                      +++++.+++++.+|++.|.+++++.+||+| +|+++|+++..|+...                                 
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~---------------------------------   48 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAK---------------------------------   48 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcC---------------------------------
Confidence            577899999999999999999999999998 6999999999998642                                 


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                                             ..+.++++++++.++++.|.+++.+++||++ +++++|++|.+|++
T Consensus        49 -----------------------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~   94 (96)
T cd04614          49 -----------------------SEVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLL   94 (96)
T ss_pred             -----------------------CCcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhh
Confidence                                   1277899999999999999999999999998 68999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=4.5e-13  Score=103.82  Aligned_cols=94  Identities=26%  Similarity=0.359  Sum_probs=82.1

Q ss_pred             CccCCcCEEEEEcCC-CcEEEEEeHHHHHHHHHhccCCCcccccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee
Q 017536            1 MAARRVDALLLTDSN-ALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE   79 (369)
Q Consensus         1 M~~~~~~~~~V~d~~-~~~~Givt~~Di~~~~~~~~~~~~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd   79 (369)
                      |.+++.+.+||+|++ ++++|++|.+|+++.+.....+....++.++|.++++++++++++.+|++.|.+++...+||++
T Consensus        19 ~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd   98 (114)
T cd04630          19 MKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVE   98 (114)
T ss_pred             HHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEee
Confidence            456788899999987 8999999999998656554445556789999998999999999999999999999999999998


Q ss_pred             CCeEEEEEehHHHHH
Q 017536           80 NGEVIALLDIAKCLY   94 (369)
Q Consensus        80 ~~~~vGiv~~~dil~   94 (369)
                      +|+++|+++..+++.
T Consensus        99 ~~~~~Gvi~~~dl~~  113 (114)
T cd04630          99 NNELIGIISLTDIFL  113 (114)
T ss_pred             CCEEEEEEEHHHhhc
Confidence            899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.46  E-value=2e-13  Score=127.12  Aligned_cols=94  Identities=33%  Similarity=0.469  Sum_probs=89.1

Q ss_pred             CccCCcCEEEEEcCCCcEEEEEeHHHHHHHHHhccCCCcccccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeC
Q 017536            1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN   80 (369)
Q Consensus         1 M~~~~~~~~~V~d~~~~~~Givt~~Di~~~~~~~~~~~~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~   80 (369)
                      |.++|+++++++++++++.||+|.+|+.++++.++.+. ..+|+++|+.++++++.++.+.+|+-.|.+++++++||+++
T Consensus       175 m~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~-~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e~  253 (610)
T COG2905         175 MKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSK-TQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTED  253 (610)
T ss_pred             HHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCc-ccchhhhhccCceeecCcchHHHHHHHHHHhCCceeeeecC
Confidence            67899999999999999999999999999999888766 78999999999999999999999999999999999999999


Q ss_pred             CeEEEEEehHHHHHH
Q 017536           81 GEVIALLDIAKCLYD   95 (369)
Q Consensus        81 ~~~vGiv~~~dil~~   95 (369)
                      |+++|+++..|++..
T Consensus       254 gq~~Gilt~~dIl~l  268 (610)
T COG2905         254 GQPLGILTLTDILRL  268 (610)
T ss_pred             CeeeEEeeHHHHHHh
Confidence            999999999999875

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.46  E-value=1e-12  Score=100.29  Aligned_cols=99  Identities=16%  Similarity=0.203  Sum_probs=88.0

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCCceEEEEeC----CEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCC
Q 017536          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTP  227 (369)
Q Consensus       152 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~----~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~  227 (369)
                      .....++++.++.++.+.+.+.+.+.+||+++    ++++|+++.+|+. +....           +|.+++.+++++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~-~~~~~-----------~m~~~~~~v~~~~~   69 (105)
T cd04591           2 PLVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLV-VALKN-----------YIDPSPFTVSPRTS   69 (105)
T ss_pred             CceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHH-HHHHH-----------hccCCCceECCCCc
Confidence            35778899999999999999998889999984    7899999999996 43321           77788899999999


Q ss_pred             HHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          228 IVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       228 l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      +.++++.|.+++.+.+||++ +|+++|+||+.|+++
T Consensus        70 l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~  104 (105)
T cd04591          70 LEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK  104 (105)
T ss_pred             HHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence            99999999999999999995 789999999999986

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=1.2e-12  Score=105.99  Aligned_cols=109  Identities=30%  Similarity=0.378  Sum_probs=94.0

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCC---------------------------
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLP---------------------------  205 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~---------------------------  205 (369)
                      +++++++++++.++++.|.+.+++.+||+++++++|+++..|++ +++.....                           
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLDGGKLVGIVSESDIL-KLLVTHDPSGNLWLPSPLELIELPLREFINWEETK   80 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeECCeEEEEecHHHHH-HHHHhccCccccccCCcceeeeccchheeehHHHH
Confidence            47789999999999999999999999999888999999999997 44432110                           


Q ss_pred             -----ccccccccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          206 -----ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       206 -----~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                           ....++.++|..++.++++++++.+++..|.+.+.+.+||+++ |+++|+||..|+++
T Consensus        81 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~  142 (143)
T cd04634          81 RALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE  142 (143)
T ss_pred             HHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence                 0134677888889999999999999999999999999999987 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.46  E-value=1.2e-12  Score=101.38  Aligned_cols=109  Identities=19%  Similarity=0.276  Sum_probs=89.0

Q ss_pred             cCCeEEeCCCcHHHHHHHHHhCC-CeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCC
Q 017536           49 RNPTFVLSDTLAVEALQKMVQGK-FRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSIS  126 (369)
Q Consensus        49 ~~~i~v~~~~~l~~a~~~m~~~~-~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  126 (369)
                      +++.++++++++.+|++.|.+++ .+.+||+| +|+++|+++..|++.....                            
T Consensus         1 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~----------------------------   52 (114)
T cd04801           1 RDFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTS----------------------------   52 (114)
T ss_pred             CCcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHh----------------------------
Confidence            35778999999999999997775 88999998 5899999999998764210                            


Q ss_pred             ChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          127 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       127 ~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                                 .....++.++|.+...++++.+++++.++++.|.+++.+.+||++ +++++|++|.+|++
T Consensus        53 -----------~~~~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~  112 (114)
T cd04801          53 -----------QWAQTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLL  112 (114)
T ss_pred             -----------hccccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEecccee
Confidence                       011234667776433467899999999999999999999999998 68999999999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.45  E-value=6.9e-13  Score=103.82  Aligned_cols=116  Identities=23%  Similarity=0.289  Sum_probs=88.7

Q ss_pred             cCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCC
Q 017536           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (369)
Q Consensus        49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  127 (369)
                      ++++++++++++.+|++.|.+++++++||++ +|+++|+++..|++.....+..                        . 
T Consensus         1 ~~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~------------------------~-   55 (120)
T cd04641           1 KNIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAY------------------------N-   55 (120)
T ss_pred             CCcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCcc------------------------c-
Confidence            4678899999999999999999999999998 7999999999999864211100                        0 


Q ss_pred             hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                        .....+...+   ....+|.  .++.++++++++.++++.|.+++.+.+||++ +|+++|++|.+|++
T Consensus        56 --~~~~~~~~~~---~~~~~~~--~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~  118 (120)
T cd04641          56 --NLDLTVGEAL---ERRSQDF--EGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDIL  118 (120)
T ss_pred             --cccCCHHHHH---hhcccCC--CCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhh
Confidence              0000000000   0123343  4578999999999999999999999999999 68999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.44  E-value=5.2e-12  Score=120.39  Aligned_cols=114  Identities=13%  Similarity=0.074  Sum_probs=100.7

Q ss_pred             cccccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHH
Q 017536           39 EETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE  118 (369)
Q Consensus        39 ~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~  118 (369)
                      ...++.++|.++++++.+++++.+++++|.+++++.+||+|+++++|+++.+|+...                       
T Consensus        86 ~~VKv~eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~gklvGIVT~rDL~~~-----------------------  142 (475)
T TIGR01303        86 AFVKSRDLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVILEDRPVGLVTDSDLLGV-----------------------  142 (475)
T ss_pred             hhcchhhccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEEEHHHhhcC-----------------------
Confidence            356788999999999999999999999999999999999998899999999997321                       


Q ss_pred             HhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHH
Q 017536          119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM  197 (369)
Q Consensus       119 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~  197 (369)
                                          ....+++++|+  .+++++++++++.++++.|.+++.+.+||++ +++++|+||.+|+++
T Consensus       143 --------------------~~~~~V~dIMt--~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~  200 (475)
T TIGR01303       143 --------------------DRFTQVRDIMS--TDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALR  200 (475)
T ss_pred             --------------------CCCCCHHHHcc--CCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHH
Confidence                                01134778888  5799999999999999999999999999999 899999999999983

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.43  E-value=1.7e-12  Score=125.32  Aligned_cols=123  Identities=19%  Similarity=0.216  Sum_probs=102.4

Q ss_pred             HHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCcccccccccc
Q 017536          137 ERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVM  215 (369)
Q Consensus       137 ~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m  215 (369)
                      +.+...+++++|.  +++.++.+++++.++++.|.+++++.+||++ +++++|+||.+|+++.+. ........++.++|
T Consensus       330 ~~l~~~~v~~im~--~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~-~~~~~~~~~v~~im  406 (454)
T TIGR01137       330 DVLKNATVKDLHL--PAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALF-AGKANPDDAVSKVM  406 (454)
T ss_pred             HHhccCCHHHhCc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHh-ccCCCcCCCHHHhc
Confidence            3466678999998  5799999999999999999999999999998 789999999999974333 32222245799999


Q ss_pred             ccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHH
Q 017536          216 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (369)
Q Consensus       216 ~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~  265 (369)
                      .+++.++++++++.++++.|.+++   .+||+++|+++|+||..|+++++
T Consensus       407 ~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l  453 (454)
T TIGR01137       407 SKKFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL  453 (454)
T ss_pred             CCCCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence            888899999999999999998864   35555579999999999999853

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=2.1e-12  Score=100.77  Aligned_cols=110  Identities=22%  Similarity=0.338  Sum_probs=90.0

Q ss_pred             CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017536           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (369)
Q Consensus        50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  128 (369)
                      ++.++++++++.+|++.|.+++...+||+| +++++|+++..++++.....                             
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~-----------------------------   52 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGG-----------------------------   52 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcC-----------------------------
Confidence            568899999999999999999999999998 58999999999987652100                             


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-C---CEEEEEeehHHHH
Q 017536          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E---NKPRGILTSKDIL  196 (369)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~---~~~~Giit~~dll  196 (369)
                              ......++.++|.....+.++++++++.++++.|.+++.+.+||++ +   ++++|++|.+|++
T Consensus        53 --------~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~  116 (118)
T cd04617          53 --------ADLQKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNIT  116 (118)
T ss_pred             --------CCccCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhhee
Confidence                    0011234566775213688999999999999999999999999998 5   6999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.42  E-value=5.2e-12  Score=97.11  Aligned_cols=107  Identities=21%  Similarity=0.279  Sum_probs=90.6

Q ss_pred             cCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017536           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (369)
Q Consensus        49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  128 (369)
                      ++++++++++++.++.+.|.++++..+||+++|+++|+++..++......                              
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~dl~~~~~~------------------------------   51 (110)
T cd04595           2 SPVKTVRPEATIEEARELLLRYGHTALPVVEGGRVVGIISRRDVEKALRH------------------------------   51 (110)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeCCEEEEEEEHHHHHHHHhc------------------------------
Confidence            46788999999999999999999999999998999999999998653110                              


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHH
Q 017536          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (369)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll  196 (369)
                               .....++.++|.  ..+.++++++++.++++.|.+.+.+.+||+++|+++|++|.+|++
T Consensus        52 ---------~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Gvvt~~di~  108 (110)
T cd04595          52 ---------GLGHAPVKDYMS--TDVVTVPPDTPLSEVQELMVEHDIGRVPVVEDGRLVGIVTRTDLL  108 (110)
T ss_pred             ---------ccccCcHHHHhc--CCCEEECCCCcHHHHHHHHHHcCCCeeEEEeCCEEEEEEEhHHhh
Confidence                     012234666776  568899999999999999999999999999988999999999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.42  E-value=3.9e-12  Score=96.83  Aligned_cols=102  Identities=25%  Similarity=0.310  Sum_probs=88.2

Q ss_pred             CCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChh
Q 017536           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN  129 (369)
Q Consensus        50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  129 (369)
                      ++.++++++++.++++.|.+++.+.+||+++++++|+++..+++...                                 
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~Giv~~~~l~~~~---------------------------------   48 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVEDGKLVGIITSRDVRRAH---------------------------------   48 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEehHHhhccc---------------------------------
Confidence            56788999999999999999999999999999999999999986420                                 


Q ss_pred             hHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHH
Q 017536          130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (369)
Q Consensus       130 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll  196 (369)
                                ...++.++|.  .++.++++++++.++++.|.+++.+.+||+++++++|++|.+|++
T Consensus        49 ----------~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~~l~  103 (105)
T cd04599          49 ----------PNRLVADAMT--REVVTISPEASLLEAKRLMEEKKIERLPVLRERKLVGIITKGTIA  103 (105)
T ss_pred             ----------ccCCHHHHcc--CCCEEECCCCCHHHHHHHHHHcCCCEeeEEECCEEEEEEEHHHhc
Confidence                      0123556665  568899999999999999999999999999989999999999985

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.42  E-value=1.4e-12  Score=120.25  Aligned_cols=117  Identities=12%  Similarity=0.168  Sum_probs=100.3

Q ss_pred             ccccccccccC--CeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 017536           40 ETPVSKVMTRN--PTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG  116 (369)
Q Consensus        40 ~~~v~dim~~~--~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~  116 (369)
                      ..+|+++|.++  ++++++++++.+|++.|.+++...+||+| +|+++|+++..|+......                  
T Consensus       196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~------------------  257 (321)
T PRK11543        196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVG------------------  257 (321)
T ss_pred             HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhC------------------
Confidence            46799999988  99999999999999999999999999998 7899999999997653110                  


Q ss_pred             HHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHH
Q 017536          117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI  195 (369)
Q Consensus       117 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dl  195 (369)
                                          ......++.++|.  .+++++.+++++.++++.|.+++...+||++ +++++|++|.+|+
T Consensus       258 --------------------~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di  315 (321)
T PRK11543        258 --------------------GGALTTPVNEAMT--RGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDF  315 (321)
T ss_pred             --------------------CCCcCCcHHHhcC--CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHH
Confidence                                0011234778887  5788999999999999999999999999999 7899999999999


Q ss_pred             H
Q 017536          196 L  196 (369)
Q Consensus       196 l  196 (369)
                      +
T Consensus       316 ~  316 (321)
T PRK11543        316 Y  316 (321)
T ss_pred             H
Confidence            7

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.41  E-value=3.1e-12  Score=99.83  Aligned_cols=110  Identities=20%  Similarity=0.297  Sum_probs=91.3

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcC-CceEEEEeCCEEEEEeehHHHHHHHHhcCC---CccccccccccccCCceecCCCCH
Q 017536          153 KVVTISPTDTVLMATKKMLELR-LSSAVVTVENKPRGILTSKDILMRVISQNL---PADSTLVEKVMTPNPECATIDTPI  228 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~-~~~~~V~d~~~~~Giit~~dll~~~~~~~~---~~~~~~v~~~m~~~~~~v~~~~~l  228 (369)
                      +++++++++++.++++.|...+ ++.+||+++|+++|+++..|++ +......   .....++.++|.+++.++++++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~   80 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDDGRPVGLIMREALM-ELLSTPYGRALYGKKPVSEVMDPDPLIVEADTPL   80 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEECCeeEEEEEHHHHH-HHHhchhhHHHHcCCcHHHhcCCCcEEecCCCCH
Confidence            3667899999999999998876 8899999889999999999997 4433210   012457889998899999999999


Q ss_pred             HHHHHHHHhCCCc---eeeEEcCCCcEEEEEeHHHHHH
Q 017536          229 VDALHIMHDGKFL---HLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       229 ~~a~~~~~~~~~~---~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      .+++..|.+++..   ..+|++++|+++|+||..|+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~  118 (119)
T cd04598          81 EEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR  118 (119)
T ss_pred             HHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence            9999999988864   3478888999999999999985

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.39  E-value=7.2e-12  Score=95.64  Aligned_cols=103  Identities=28%  Similarity=0.409  Sum_probs=90.3

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHH
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  231 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a  231 (369)
                      ++.++.++.++.+++..|.+.+++.+||++ +++++|+++.++++ ..    .  ...++.++|..++.++++++++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~-~~----~--~~~~~~~~~~~~~~~v~~~~~l~~~   74 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLL-RN----P--EEEQLALLMTRDPPTVSPDDDVKEA   74 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHH-hc----c--ccchHHHHhcCCCceECCCCCHHHH
Confidence            467888999999999999988999999998 68999999999996 31    1  1345778888889999999999999


Q ss_pred             HHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       232 ~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      +..|.+++.+.+||+| +|+++|++|..|+++
T Consensus        75 ~~~~~~~~~~~~~Vvd-~~~~~G~it~~d~~~  105 (106)
T cd04638          75 AKLMVENNIRRVPVVD-DGKLVGIVTVADIVR  105 (106)
T ss_pred             HHHHHHcCCCEEEEEE-CCEEEEEEEHHHhhc
Confidence            9999999999999998 479999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.39  E-value=6.6e-12  Score=98.69  Aligned_cols=119  Identities=22%  Similarity=0.289  Sum_probs=93.7

Q ss_pred             cCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCC
Q 017536           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (369)
Q Consensus        49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  127 (369)
                      ++++++++++++.++.+.|.+++++.+||++ +|+++|+++..+++.........                         
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~-------------------------   56 (124)
T cd04600           2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRR-------------------------   56 (124)
T ss_pred             CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccc-------------------------
Confidence            5788999999999999999999999999998 59999999999987542211000                         


Q ss_pred             hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                        .............++.++|.  .++.++++++++.++++.|.+.+.+.+||++ +|+++|++|.+|++
T Consensus        57 --~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~  122 (124)
T cd04600          57 --PLRGRLRGRDKPETVGDIMS--PPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLI  122 (124)
T ss_pred             --hhhhhhhcccccccHHHhcc--CCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhh
Confidence              00000001122345777886  5789999999999999999999999999999 89999999999996

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.39  E-value=9.1e-12  Score=97.89  Aligned_cols=116  Identities=21%  Similarity=0.186  Sum_probs=88.5

Q ss_pred             CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-C-CeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCC
Q 017536           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (369)
Q Consensus        50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~-~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  127 (369)
                      ++.++.+++++.+|++.|.+++++++||+| + |+++|+++..|+++...........                      
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~----------------------   59 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPG----------------------   59 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccc----------------------
Confidence            567889999999999999999999999998 5 8999999999988753322110000                      


Q ss_pred             hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHH
Q 017536          128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI  195 (369)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dl  195 (369)
                          .....  .......++|.  .++.++++++++.+|++.|.+++.+++||++ +++++|+||.+|+
T Consensus        60 ----~~~~~--~~~~~~~~~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di  120 (123)
T cd04627          60 ----LDPLY--PIPLRDLTIGT--SDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDV  120 (123)
T ss_pred             ----hhhhh--hhhhhhcccCc--CCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHh
Confidence                00000  00011234554  5788999999999999999999999999998 7899999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.39  E-value=5.4e-12  Score=97.14  Aligned_cols=106  Identities=14%  Similarity=0.174  Sum_probs=88.7

Q ss_pred             CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017536           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (369)
Q Consensus        50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  128 (369)
                      ++.++.+++++.++++.|.+.++..+||++ +|+++|+++..++++.....                             
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~-----------------------------   52 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEG-----------------------------   52 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhc-----------------------------
Confidence            567889999999999999989999999998 58999999999987542100                             


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                                ....++.++|.  .++.+++++.++.++++.|.+++...+||++ +++++|++|.+|+.
T Consensus        53 ----------~~~~~v~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~  109 (111)
T cd04639          53 ----------GPDAPVRGVMR--RDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVG  109 (111)
T ss_pred             ----------CCCCcHHHHhc--CCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhh
Confidence                      01124666665  5688999999999999999999999999998 59999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.39  E-value=1.5e-11  Score=94.84  Aligned_cols=109  Identities=22%  Similarity=0.302  Sum_probs=89.1

Q ss_pred             CCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChh
Q 017536           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN  129 (369)
Q Consensus        50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  129 (369)
                      .+.++.+++++.++++.|.+++...++|.++|+++|+++..+++.......                             
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~-----------------------------   52 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVMERGELVGLLTFREVLQAMAQHG-----------------------------   52 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHHHHHHHhcC-----------------------------
Confidence            467889999999999999888888888888899999999999876522100                             


Q ss_pred             hHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHH
Q 017536          130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (369)
Q Consensus       130 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll  196 (369)
                             ......++.++|.  ..+.++++++++.++++.|.+++..++||+++++++|++|.+|++
T Consensus        53 -------~~~~~~~v~~~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~~~~~Gvvt~~dl~  110 (112)
T cd04625          53 -------AGVLDTTVRAIMN--PEPIVASPDDSIDEVRRLMVERHLRYLPVLDGGTLLGVISFHDVA  110 (112)
T ss_pred             -------CchhcCCHHHHhC--CCCeEECCCCCHHHHHHHHHHcCCCeeeEEECCEEEEEEEHHHhh
Confidence                   0001234667776  568889999999999999999999999999989999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.39  E-value=5.8e-12  Score=96.55  Aligned_cols=103  Identities=14%  Similarity=0.240  Sum_probs=88.6

Q ss_pred             cCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCC
Q 017536           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (369)
Q Consensus        49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  127 (369)
                      .++.++++++++.+|++.|.+++.+.+||+| +|+++|+++..+++..                                
T Consensus         2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~--------------------------------   49 (108)
T cd04596           2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGK--------------------------------   49 (108)
T ss_pred             CccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhcc--------------------------------
Confidence            3678899999999999999999999999998 6999999999998632                                


Q ss_pred             hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                                 ....++.++|.  ..+.++++++++.++++.|.+++...+||++ +|+++|++|..|++
T Consensus        50 -----------~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~  106 (108)
T cd04596          50 -----------DPDTTIEKVMT--KNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVL  106 (108)
T ss_pred             -----------cccccHHHHhc--CCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhh
Confidence                       01123556665  4688999999999999999999999999998 88999999999986

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.38  E-value=1.2e-11  Score=94.97  Aligned_cols=107  Identities=20%  Similarity=0.314  Sum_probs=89.4

Q ss_pred             cCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017536           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (369)
Q Consensus        49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  128 (369)
                      +++.++++++++.++++.|.+++++.+||+++++++|+++..++++.....                             
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~~l~~~~~~~-----------------------------   51 (110)
T cd04588           1 KPLITLNPNATLREAARLFNTHHIHGAPVVDDGKLVGIVTLSDIAHAIARG-----------------------------   51 (110)
T ss_pred             CCcEEECCCCCHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHhcc-----------------------------
Confidence            367789999999999999999999999999889999999999987641100                             


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                                ....++.++|.  .++.+++++.++.++++.|.+.+.+.+||++ +|++.|+++.+|++
T Consensus        52 ----------~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~  108 (110)
T cd04588          52 ----------LELAKVKDVMT--KDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDIL  108 (110)
T ss_pred             ----------ccccCHHHHhc--CCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhh
Confidence                      00123555665  5788999999999999999999999999998 69999999999986

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.38  E-value=1.1e-11  Score=94.46  Aligned_cols=101  Identities=20%  Similarity=0.231  Sum_probs=86.6

Q ss_pred             CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017536           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (369)
Q Consensus        50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  128 (369)
                      +++++++++++.+|++.|.+++.+.+||++ +|+++|+++..+++...                                
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~--------------------------------   49 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARAS--------------------------------   49 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhc--------------------------------
Confidence            567889999999999999999999999998 79999999999986430                                


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                                  ..++.++|.  ..+.++.+++++.++++.|.+++.+.+||++ +++++|+++.+|++
T Consensus        50 ------------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~  104 (106)
T cd04582          50 ------------GGCCGDHAE--PFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIA  104 (106)
T ss_pred             ------------ccchhhhcc--cCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhh
Confidence                        012455665  4567899999999999999999999999998 68999999999986

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.38  E-value=9.3e-12  Score=95.81  Aligned_cols=109  Identities=24%  Similarity=0.321  Sum_probs=90.5

Q ss_pred             cCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017536           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (369)
Q Consensus        49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  128 (369)
                      +++.+++++.++.++.+.|.+++++.+||+++++++|+++..+++......                             
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~-----------------------------   51 (111)
T cd04800           1 RPPVTCSPDTTIREAARLMTEHRVSSLLVVDDGRLVGIVTDRDLRNRVVAE-----------------------------   51 (111)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHhcc-----------------------------
Confidence            367789999999999999999999999999989999999999987532110                             


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHH
Q 017536          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (369)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll  196 (369)
                              ......++.++|.  .+++++++++++.++++.|.+.+.+++||+++|+++|++|.+|++
T Consensus        52 --------~~~~~~~i~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Giit~~di~  109 (111)
T cd04800          52 --------GLDPDTPVSEVMT--APPITIPPDATVFEALLLMLERGIHHLPVVDDGRLVGVISATDLL  109 (111)
T ss_pred             --------CCCccCCHHHHhC--CCCeEECCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhh
Confidence                    0001234566665  578899999999999999999999999999889999999999996

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.38  E-value=9.7e-12  Score=96.43  Aligned_cols=109  Identities=19%  Similarity=0.287  Sum_probs=89.6

Q ss_pred             cCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCC
Q 017536           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (369)
Q Consensus        49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  127 (369)
                      +++.++++++++.++++.|.+.++..+||+| +|+++|+++..+++.......                           
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~---------------------------   53 (115)
T cd04593           1 PPPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADE---------------------------   53 (115)
T ss_pred             CCCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhccc---------------------------
Confidence            3567889999999999999999999999998 699999999999876421100                           


Q ss_pred             hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-C--CEEEEEeehHHHH
Q 017536          128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E--NKPRGILTSKDIL  196 (369)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~--~~~~Giit~~dll  196 (369)
                                .....++.++|.  .++.++.+++++.++++.|.+++...+||++ +  |+++|++|.+|++
T Consensus        54 ----------~~~~~~~~~~~~--~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~  113 (115)
T cd04593          54 ----------AGEPSAVDEVAT--PPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVL  113 (115)
T ss_pred             ----------ccccccHHHhcc--CCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhh
Confidence                      001123556665  5788999999999999999999999999998 5  7999999999996

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=9.7e-12  Score=99.52  Aligned_cols=131  Identities=21%  Similarity=0.305  Sum_probs=93.9

Q ss_pred             CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017536           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (369)
Q Consensus        50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  128 (369)
                      +++++.+++++.+|++.|.++++..+||+| +|+++|+++..+++............... .  .+   ....+      
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~-~--~~---~~~~~------   69 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKKS-I--KM---KRKAG------   69 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccchhh-h--hh---hhhcc------
Confidence            567889999999999999999999999998 59999999999998753211000000000 0  00   00000      


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHH
Q 017536          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (369)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll  196 (369)
                       . .......+...+++++|.  .++..+.+++++.++++.|.+.+.+.+||+++|+++|++|.+|++
T Consensus        70 -~-~~~~~~~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~Gvit~~di~  133 (135)
T cd04621          70 -Q-KRYRYVKEVPLVAEDIMT--EEIITVSPNDDVVDAAKLMLEANISGLPVVDNDNIVGVITKTDIC  133 (135)
T ss_pred             -c-ccccccccccccHHHhcC--CCCeEECCCCCHHHHHHHHHHcCCCEEEEEeCCEEEEEEEHHHHh
Confidence             0 000001123456888887  568899999999999999999999999999989999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=3.6e-12  Score=98.32  Aligned_cols=94  Identities=35%  Similarity=0.615  Sum_probs=80.4

Q ss_pred             CccCCcCEEEEEcCCCcEEEEEeHHHHHHHHHhccCCCcccccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeC
Q 017536            1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN   80 (369)
Q Consensus         1 M~~~~~~~~~V~d~~~~~~Givt~~Di~~~~~~~~~~~~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~   80 (369)
                      |.+++...+||+|++++++|+++..|+++.+..........++.++|.+++.++.+++++.++++.|.+++.+.+||+++
T Consensus        19 ~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~   98 (113)
T cd04623          19 MAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG   98 (113)
T ss_pred             HHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC
Confidence            34567889999998899999999999986554333333356899999889999999999999999999999999999998


Q ss_pred             CeEEEEEehHHHHH
Q 017536           81 GEVIALLDIAKCLY   94 (369)
Q Consensus        81 ~~~vGiv~~~dil~   94 (369)
                      |+++|+++..++++
T Consensus        99 ~~~~Gvit~~di~~  112 (113)
T cd04623          99 GKLVGIVSIGDVVK  112 (113)
T ss_pred             CEEEEEEEHHHhhc
Confidence            99999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.38  E-value=1.1e-11  Score=119.06  Aligned_cols=115  Identities=12%  Similarity=0.134  Sum_probs=97.6

Q ss_pred             ccccccc---cCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeC----CeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHH
Q 017536           42 PVSKVMT---RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV  114 (369)
Q Consensus        42 ~v~dim~---~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~----~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~  114 (369)
                      +|+++|.   .+++++++++++.+|++.|.++++..+||+|+    ++++|+++..|+...                   
T Consensus        95 kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~-------------------  155 (502)
T PRK07107         95 RVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRIS-------------------  155 (502)
T ss_pred             HHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhcc-------------------
Confidence            4666664   45578999999999999999999999999984    799999999997421                   


Q ss_pred             HhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehH
Q 017536          115 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSK  193 (369)
Q Consensus       115 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~  193 (369)
                                            ......+++++|++.++++++++++++.+|++.|.++++..+||+| +++++|+||.+
T Consensus       156 ----------------------~~~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~  213 (502)
T PRK07107        156 ----------------------RMSLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRK  213 (502)
T ss_pred             ----------------------ccCCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhH
Confidence                                  0022356889998655899999999999999999999999999999 78999999999


Q ss_pred             HHHH
Q 017536          194 DILM  197 (369)
Q Consensus       194 dll~  197 (369)
                      |+++
T Consensus       214 Dilk  217 (502)
T PRK07107        214 DYDS  217 (502)
T ss_pred             HHHh
Confidence            9983

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.38  E-value=1.6e-11  Score=94.34  Aligned_cols=105  Identities=28%  Similarity=0.412  Sum_probs=88.7

Q ss_pred             cCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCC
Q 017536           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (369)
Q Consensus        49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  127 (369)
                      ++++++.+++++.++++.|.++++..+||++ +|+++|+++..+++......                            
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~----------------------------   53 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARD----------------------------   53 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhhC----------------------------
Confidence            5778899999999999999999999999998 68999999999987541100                            


Q ss_pred             hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                                   ..++.++|.  .++.++++++++.++++.|.+.+...+||++ +|+++|++|..|++
T Consensus        54 -------------~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~  108 (110)
T cd04605          54 -------------KKSVEDIMT--RNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDIS  108 (110)
T ss_pred             -------------ccCHHHhcC--CCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhh
Confidence                         012455565  4688899999999999999999999999998 78999999999985

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=9.2e-12  Score=96.26  Aligned_cols=110  Identities=25%  Similarity=0.413  Sum_probs=90.8

Q ss_pred             CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017536           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (369)
Q Consensus        50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  128 (369)
                      ++.++++++++.+|++.|.+++++.+||++ +++++|+++..++++.......                           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~---------------------------   54 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSY---------------------------   54 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhh---------------------------
Confidence            567899999999999999999999999998 6899999999998765332100                           


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHH
Q 017536          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (369)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll  196 (369)
                              ......++.++|.  .++.++.+++++.++++.|.+++.+.+||+++|+++|++|.+|++
T Consensus        55 --------~~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvit~~di~  112 (114)
T cd04629          55 --------HCDGVATVRDIMT--TEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDDGKLVGQISRRDVL  112 (114)
T ss_pred             --------ccCCCccHHHHhc--cCceEECCCCcHHHHHHHHHHhCCCccCEEECCEEEEEEEHHHHh
Confidence                    0011234667776  468889999999999999999999999999889999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=1.7e-11  Score=94.59  Aligned_cols=108  Identities=27%  Similarity=0.355  Sum_probs=90.2

Q ss_pred             CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017536           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (369)
Q Consensus        50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  128 (369)
                      ++.++.+++++.++++.|.+++.+.+||+| +++++|+++..+++......                             
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~-----------------------------   52 (113)
T cd04615           2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALES-----------------------------   52 (113)
T ss_pred             CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhh-----------------------------
Confidence            467889999999999999999999999998 68999999999987542210                             


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                              +.....++.++|.  .++.++++++++.++++.|.+.+.+.+||++ +|+++|++|..|++
T Consensus        53 --------~~~~~~~i~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~  111 (113)
T cd04615          53 --------EELKDAKVREVMN--SPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDIL  111 (113)
T ss_pred             --------hhhcCCcHHHhcc--CCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhh
Confidence                    1122334667776  5688999999999999999999999999998 78999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=1.4e-11  Score=96.39  Aligned_cols=119  Identities=24%  Similarity=0.264  Sum_probs=93.3

Q ss_pred             cCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017536           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (369)
Q Consensus        49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  128 (369)
                      ++++++.+++++.++++.|.+++++.+||+++|+++|+++..+++..........                         
T Consensus         1 ~~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~~~~~-------------------------   55 (121)
T cd04633           1 KPVITVSPDDRVSHARRLMLDHDISRLPVIEGGKLVGIVTEKDIADALRSFRPLV-------------------------   55 (121)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCeeEEEECCEEEEEEchHHHHHhhhhhhhcc-------------------------
Confidence            3677899999999999999999999999999999999999999876432110000                         


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHH
Q 017536          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (369)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll  196 (369)
                        +...........++.++|.  .++.++++++++.++++.|.+.+.+.+||+++++++|+++.+|++
T Consensus        56 --~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvi~~~dl~  119 (121)
T cd04633          56 --RDRHQERRIRNLPVSDIMT--RPVITIEPDTSVSDVASLMLENNIGGLPVVDDGKLVGIVTRTDIL  119 (121)
T ss_pred             --cchhhhhhhhccCHHHHcc--CCceEECCCCcHHHHHHHHHHcCCCcccEEECCEEEEEEEHHHhh
Confidence              0000111122345667776  568899999999999999999999999999889999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.37  E-value=1.4e-11  Score=94.70  Aligned_cols=107  Identities=19%  Similarity=0.261  Sum_probs=89.5

Q ss_pred             CCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChh
Q 017536           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN  129 (369)
Q Consensus        50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  129 (369)
                      ++.++++++++.+|++.|.++++..+||+++++++|+++..+++.......                             
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~~l~~~~~~~~-----------------------------   52 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDDGRPLGIVTERDILRLLASGP-----------------------------   52 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEeHHHHHHHHhcCC-----------------------------
Confidence            467889999999999999999999999999999999999999876421000                             


Q ss_pred             hHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       130 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                               ....++.++|.  .+++++++++++.++++.|.+.+.+.+||++ +|++.|+++.+|++
T Consensus        53 ---------~~~~~v~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~  109 (111)
T cd04611          53 ---------DLQTPVGEVMS--SPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLL  109 (111)
T ss_pred             ---------CCCcCHHHhcC--CCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhh
Confidence                     01234666775  5688899999999999999999999999998 69999999999986

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.36  E-value=9.4e-12  Score=96.18  Aligned_cols=107  Identities=18%  Similarity=0.210  Sum_probs=89.0

Q ss_pred             CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017536           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (369)
Q Consensus        50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  128 (369)
                      +++++++++++.++++.|.+++.+.+||++ +|+++|+++..++++.....                             
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~-----------------------------   53 (113)
T cd04607           3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKG-----------------------------   53 (113)
T ss_pred             cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcC-----------------------------
Confidence            456789999999999999999999999998 68999999999987542110                             


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                               .....++.++|.  ..+.++++++++.++++.|.+++.+.+||++ +|+++|++|.+|++
T Consensus        54 ---------~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~  111 (113)
T cd04607          54 ---------LSLDDPVSEVMN--RNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLL  111 (113)
T ss_pred             ---------CCcCCCHHHhhc--CCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhc
Confidence                     001234666776  5688899999999999999999999999998 78999999999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.36  E-value=2e-11  Score=93.51  Aligned_cols=104  Identities=20%  Similarity=0.269  Sum_probs=88.7

Q ss_pred             cCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCC
Q 017536           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (369)
Q Consensus        49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  127 (369)
                      +++.++++++++.++++.|.++++..+||++ +++++|+++..+++....                              
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~------------------------------   51 (109)
T cd04583           2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAYK------------------------------   51 (109)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHhh------------------------------
Confidence            4677899999999999999999999999998 589999999999865310                              


Q ss_pred             hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                                  ...++.++|.  ..+.++++++++.++++.|.+.+.+++||++ +|+++|++|.+|++
T Consensus        52 ------------~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~  107 (109)
T cd04583          52 ------------EAKSLEDIML--EDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLV  107 (109)
T ss_pred             ------------cCCcHhHhhc--CCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhh
Confidence                        0123556665  5688999999999999999999999999998 78999999999986

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.36  E-value=1.5e-11  Score=94.71  Aligned_cols=107  Identities=21%  Similarity=0.247  Sum_probs=89.4

Q ss_pred             CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017536           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (369)
Q Consensus        50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  128 (369)
                      ++.++++++++.++++.|.+++++.+||++ +|+++|+++..+++......                             
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~-----------------------------   52 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFE-----------------------------   52 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhc-----------------------------
Confidence            567889999999999999999999999998 59999999999987541100                             


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHH
Q 017536          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (369)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll  196 (369)
                               .....++.++|.  +++.++.+++++.++++.|.+++.+.+||+++|+++|++|..|++
T Consensus        53 ---------~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~di~  109 (111)
T cd04626          53 ---------SFLEKKVFNIVS--QDVFYVNEEDTIDEALDIMREKQIGRLPVVDDNKLIGVVRTKDIL  109 (111)
T ss_pred             ---------ccccCcHHHHhc--CCcEEEcCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEhHHhc
Confidence                     001224566665  578899999999999999999999999999888999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.36  E-value=1.9e-11  Score=94.24  Aligned_cols=109  Identities=22%  Similarity=0.292  Sum_probs=89.9

Q ss_pred             CCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChh
Q 017536           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN  129 (369)
Q Consensus        50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  129 (369)
                      ++.++++++++.++++.|.+++.+.+||+++++++|+++..+++.......                             
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~-----------------------------   52 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDNEKPVGIITERDLVKKVVSRN-----------------------------   52 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEECCEEEEEEEHHHHHHHHhhcc-----------------------------
Confidence            567889999999999999999999999999779999999999886532100                             


Q ss_pred             hHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHH
Q 017536          130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (369)
Q Consensus       130 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll  196 (369)
                             ......++.++|.  .++.++.+++++.++++.|.+.+...+||+++++++|+++.+|++
T Consensus        53 -------~~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvi~~~di~  110 (112)
T cd04802          53 -------LKPREVPVGEVMS--TPLITIDPNASLNEAAKLMAKHGIKRLPVVDDDELVGIVTTTDIV  110 (112)
T ss_pred             -------CCcccCCHHHhcC--CCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCCEEEEEEEhhhhh
Confidence                   0011234667776  568889999999999999999999999999955999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.36  E-value=9.7e-12  Score=99.45  Aligned_cols=131  Identities=21%  Similarity=0.300  Sum_probs=94.6

Q ss_pred             cCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCC
Q 017536           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (369)
Q Consensus        49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  127 (369)
                      +++.++.+++++.++++.|.+++++++||+| +++++|+++..+++...........   .........           
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~---~~~~~~~~~-----------   67 (135)
T cd04586           2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRR---ARWLDLLAG-----------   67 (135)
T ss_pred             CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchh---hhHHHHhcc-----------
Confidence            5778899999999999999999999999998 6899999999998764321100000   000000000           


Q ss_pred             hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHH
Q 017536          128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (369)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll  196 (369)
                      ........ ......++.++|.  .++.++.+++++.++++.|.+.+.+.+||+++|+++|++|.+|++
T Consensus        68 ~~~~~~~~-~~~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd~g~~~Gvit~~di~  133 (135)
T cd04586          68 AEELAAAF-VRSHGRKVADVMT--RPVVTVGEDTPLAEVAELMEEHRIKRVPVVRGGRLVGIVSRADLL  133 (135)
T ss_pred             hHHHHHHH-HHhcCCCHHHHhC--CCceEeCCCCcHHHHHHHHHHcCCCccCEecCCEEEEEEEhHhhh
Confidence            00000000 0123346788886  578999999999999999999999999999989999999999986

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.36  E-value=2.2e-11  Score=92.71  Aligned_cols=99  Identities=20%  Similarity=0.177  Sum_probs=85.2

Q ss_pred             eEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChhhH
Q 017536           52 TFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTF  131 (369)
Q Consensus        52 i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  131 (369)
                      +++++++++.++++.|.+.++..+||+++++++|+++..+++...                                   
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~-----------------------------------   48 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDYNKFLGAVYLKDIENAT-----------------------------------   48 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHHhhhc-----------------------------------
Confidence            467899999999999999999999999889999999999886420                                   


Q ss_pred             HHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHH
Q 017536          132 IETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (369)
Q Consensus       132 ~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll  196 (369)
                               ..++.++|.  ..+.+++++.++.++++.|.+++.+.+||+++|+++|++|.+|++
T Consensus        49 ---------~~~~~~~~~--~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~~~~iGvit~~dl~  102 (104)
T cd04594          49 ---------YGDVVDYIV--RGIPYVRLTSTAEEAWEVMMKNKTRWCPVVDDGKFKGIVTLDSIL  102 (104)
T ss_pred             ---------ccchhhhhh--cCCcEEcCCCCHHHHHHHHHHcCcceEEEEECCEEEEEEEHHHhh
Confidence                     012445555  457899999999999999999999999999989999999999986

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.36  E-value=3.8e-12  Score=100.34  Aligned_cols=109  Identities=23%  Similarity=0.349  Sum_probs=88.9

Q ss_pred             cCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCC
Q 017536           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (369)
Q Consensus        49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  127 (369)
                      ++++++.+++++.++++.|.++++..+||++ +|+++|+++..+++.......                           
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~---------------------------   54 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGK---------------------------   54 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhc---------------------------
Confidence            4678899999999999999999999999998 689999999999876422110                           


Q ss_pred             hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHH---------HcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKML---------ELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~---------~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                                .....+++++|.  .++.++.+++++.++.+++.         +.+...+||++ +|+++|++|.+|++
T Consensus        55 ----------~~~~~~v~~im~--~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~  121 (124)
T cd04608          55 ----------VQPSDPVSKALY--KQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLL  121 (124)
T ss_pred             ----------cCCCCcHHHHhh--ccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhh
Confidence                      012346888997  67899999999999998653         33567778887 68999999999997

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.35  E-value=2.5e-11  Score=93.41  Aligned_cols=108  Identities=19%  Similarity=0.209  Sum_probs=89.6

Q ss_pred             CCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChh
Q 017536           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN  129 (369)
Q Consensus        50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  129 (369)
                      +++++++++++.++++.|.+++...+||+|+|+++|+++..+++......                              
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~~~~------------------------------   51 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDGDPRLGIVTRTDLLDAVLLD------------------------------   51 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecCCeEEEEEEHHHHHHHHHcC------------------------------
Confidence            56788999999999999999999999999888999999999987542100                              


Q ss_pred             hHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHH
Q 017536          130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (369)
Q Consensus       130 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll  196 (369)
                             ......++.++|.  .++..+++++++.++++.|.+++...+||+++++++|++|..|++
T Consensus        52 -------~~~~~~~i~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~dl~  109 (111)
T cd04589          52 -------GLPSSTPVGEIAT--FPLITVDPDDFLFNALLLMTRHRIHRVVVREGGEVVGVLEQTDLL  109 (111)
T ss_pred             -------CCCCCCCHHHHhC--CCcEEECCCCcHHHHHHHHHHhCccEEEEeeCCEEEEEEEhHHhh
Confidence                   0011234666776  568899999999999999999999999999988999999999986

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.35  E-value=1.7e-11  Score=95.85  Aligned_cols=119  Identities=27%  Similarity=0.373  Sum_probs=92.8

Q ss_pred             cCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017536           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (369)
Q Consensus        49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  128 (369)
                      +++.++++++++.++++.|.++++..+||+++|+++|+++..+++.........                       ...
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~i~~~~l~~~~~~~~~~-----------------------~~~   57 (122)
T cd04585           1 KNPITVTPDTSLMEALKLMKENSIRRLPVVDRGKLVGIVTDRDLKLASPSKATT-----------------------LDI   57 (122)
T ss_pred             CCCEEeCCCCcHHHHHHHHHhCCcceeeEecCCeEEEEEeHHHHHHhhhccccc-----------------------ccc
Confidence            357789999999999999999999999999989999999999987652210000                       000


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                      .    .........++.++|.  .++.++++++++.+++..|.+.+.+.+||++ +|+++|++|.+|++
T Consensus        58 ~----~~~~~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~  120 (122)
T cd04585          58 W----ELYYLLSKIKVSDIMT--RDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLF  120 (122)
T ss_pred             h----hhhhhhcccCHHHhcc--CCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhh
Confidence            0    0000122345677786  5788999999999999999999999999998 69999999999996

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.35  E-value=2.1e-11  Score=93.68  Aligned_cols=108  Identities=24%  Similarity=0.306  Sum_probs=89.4

Q ss_pred             cCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017536           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (369)
Q Consensus        49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  128 (369)
                      ++++++++++++.++++.|.+.+++++||+++++++|+++..+++......                             
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~-----------------------------   51 (111)
T cd04612           1 PDVVTVPVDLTVDEVLALMFGERHRGYPVVDDGRLVGIVTLADIRRVPAEG-----------------------------   51 (111)
T ss_pred             CCCEEeCCCCcHHHHHHHHHHcCCCcceEeeCCeEEEEEEHHHHHHHHhcC-----------------------------
Confidence            467889999999999999999999999999889999999999987541100                             


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                               .....++.++|.  .++.++.+++++.++++.|.+.+.+.+||++ +++++|++|..|++
T Consensus        52 ---------~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~  109 (111)
T cd04612          52 ---------REATVLVGDVMT--RDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLL  109 (111)
T ss_pred             ---------cccccCHHHhcc--CCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhh
Confidence                     000023455665  5689999999999999999999999999998 69999999999986

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.34  E-value=3.7e-12  Score=125.57  Aligned_cols=134  Identities=16%  Similarity=0.172  Sum_probs=101.3

Q ss_pred             ChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhc---
Q 017536          127 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQ---  202 (369)
Q Consensus       127 ~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~---  202 (369)
                      ++.+..+.........+++++|+. ++++++++++++.++.+.|.+++++.+||+| +|+++|++|.+|++ .....   
T Consensus       231 t~~dt~~t~~~l~~~~~V~~iM~~-~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~-~~~~~~~i  308 (546)
T PRK14869        231 TPYDTFTTARLINQSIPVSYIMTT-EDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLL-SPVRKKVI  308 (546)
T ss_pred             ecccHHHHHHHhhcCCCHHHhccC-CCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhh-ccccCceE
Confidence            344556666666677889999983 4799999999999999999999999999999 89999999999998 32221   


Q ss_pred             ------------CCCc-------cccccccccccCCcee---cCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHH
Q 017536          203 ------------NLPA-------DSTLVEKVMTPNPECA---TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIH  260 (369)
Q Consensus       203 ------------~~~~-------~~~~v~~~m~~~~~~v---~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~d  260 (369)
                                  +...       ...++.++|+..++.+   +...+..-+.+.|.+.++...|++. ..-+.||+|-++
T Consensus       309 LVD~~e~~q~~~~~~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia-~~ll~gIlsDT~  387 (546)
T PRK14869        309 LVDHNEKSQAVEGIEEAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIA-GLLLAAILSDTL  387 (546)
T ss_pred             EEcCccccccccchhhceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHHhc
Confidence                        0000       0124556777666555   4467778889999999998888885 456888888777


Q ss_pred             HHH
Q 017536          261 ITH  263 (369)
Q Consensus       261 i~~  263 (369)
                      .++
T Consensus       388 ~f~  390 (546)
T PRK14869        388 LFK  390 (546)
T ss_pred             Ccc
Confidence            665

>PRK11573 hypothetical protein; Provisional

Probab=99.34  E-value=4.1e-11  Score=113.16  Aligned_cols=130  Identities=12%  Similarity=0.168  Sum_probs=104.7

Q ss_pred             ccCCCccccccccccc--CCeEEeCCCcHHHHHHHHHhCCCeEeeEeeC--CeEEEEEehHHHHHHHHHHHHHHHhhhhH
Q 017536           34 RELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEKGKA  109 (369)
Q Consensus        34 ~~~~~~~~~v~dim~~--~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~~~vGiv~~~dil~~~~~~~~~~~~~~~~  109 (369)
                      +-.++++.+|+++|++  ++++++.++++.++++.+.+++++++||+++  ++++|++..+|++.......         
T Consensus       180 ~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~---------  250 (413)
T PRK11573        180 SVLDLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKK---------  250 (413)
T ss_pred             HHhccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccC---------
Confidence            4457889999999985  6799999999999999999999999999973  88999999999985311000         


Q ss_pred             HHHHHHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEE
Q 017536          110 IAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRG  188 (369)
Q Consensus       110 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~G  188 (369)
                                    .              .....+.+++   +++.+++++.++.++++.|++++.+...|+| .|...|
T Consensus       251 --------------~--------------~~~~~l~~~~---r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~G  299 (413)
T PRK11573        251 --------------E--------------FTKENMLRAA---DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQG  299 (413)
T ss_pred             --------------c--------------CCHHHHHhhc---cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEE
Confidence                          0              0000122334   3588999999999999999999999999999 789999


Q ss_pred             EeehHHHHHHHHhcC
Q 017536          189 ILTSKDILMRVISQN  203 (369)
Q Consensus       189 iit~~dll~~~~~~~  203 (369)
                      +||..|++..++.+-
T Consensus       300 iVTleDilEeivGei  314 (413)
T PRK11573        300 LVTVEDILEEIVGDF  314 (413)
T ss_pred             EeeHHHHHHHHhCCC
Confidence            999999997776543

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.34  E-value=8.3e-12  Score=123.68  Aligned_cols=122  Identities=12%  Similarity=0.157  Sum_probs=101.7

Q ss_pred             CcccccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 017536           38 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG  116 (369)
Q Consensus        38 ~~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~  116 (369)
                      +...+++|+|.+++.++++++++.++.+.|.+++.+.+||+| +++++|+++.+|+.+.....                 
T Consensus       444 L~~~~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~-----------------  506 (574)
T PRK01862        444 LRTTQMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDK-----------------  506 (574)
T ss_pred             HhhCcHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhcc-----------------
Confidence            446789999999999999999999999999999999999998 68999999999987532110                 


Q ss_pred             HHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-C--CEEEEEeehH
Q 017536          117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E--NKPRGILTSK  193 (369)
Q Consensus       117 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~--~~~~Giit~~  193 (369)
                                          +.....++.++|.  +++.++++++++.++++.|.+++.+.+||+| +  ++++|++|.+
T Consensus       507 --------------------~~~~~~~v~dim~--~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~  564 (574)
T PRK01862        507 --------------------RDTTDKTAADYAH--TPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKT  564 (574)
T ss_pred             --------------------cccccchHHHhcc--CCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHH
Confidence                                0011234667776  5688999999999999999999999999998 4  4899999999


Q ss_pred             HHHHH
Q 017536          194 DILMR  198 (369)
Q Consensus       194 dll~~  198 (369)
                      |+++.
T Consensus       565 DIl~~  569 (574)
T PRK01862        565 SLLDA  569 (574)
T ss_pred             HHHHH
Confidence            99843

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.34  E-value=2e-11  Score=96.04  Aligned_cols=120  Identities=27%  Similarity=0.362  Sum_probs=91.9

Q ss_pred             cCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-C-CeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCC
Q 017536           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSIS  126 (369)
Q Consensus        49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~-~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  126 (369)
                      +++.++.++.++.+|++.|.++++..+||++ + |+++|+++..+++........... ..           ...     
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~-~~-----------~~~-----   63 (125)
T cd04631           1 KDVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNK-IK-----------TGN-----   63 (125)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhcc-cc-----------ccc-----
Confidence            4677899999999999999999999999998 4 899999999998864321100000 00           000     


Q ss_pred             ChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          127 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       127 ~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                               .......++.++|.  .+++++++++++.++++.|.+.+.+.+||++ +|+++|+||.+|++
T Consensus        64 ---------~~~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~  123 (125)
T cd04631          64 ---------GLEAINEPVRSIMT--RNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLL  123 (125)
T ss_pred             ---------cchhhhcCHHHHhc--CCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhh
Confidence                     00112234667776  5799999999999999999999999999998 69999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.34  E-value=2e-11  Score=94.67  Aligned_cols=111  Identities=16%  Similarity=0.267  Sum_probs=88.1

Q ss_pred             CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017536           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (369)
Q Consensus        50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  128 (369)
                      +++++++++++.++++.|.+++++.+||+| +|+++|+++..+++++.......                          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~--------------------------   55 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENL--------------------------   55 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCch--------------------------
Confidence            577899999999999999999999999998 68999999999987653210000                          


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                       .    . ..+...++.++|.  +.+.++++++++.++++.|.+.+  .+||++ +++++|++|.+|++
T Consensus        56 -~----~-~~~~~~~v~~~~~--~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil  114 (116)
T cd04643          56 -D----L-ERLVDLKVIDVMN--TDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREIL  114 (116)
T ss_pred             -h----H-HHHhCCcHHHHhc--CCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhh
Confidence             0    0 0012345777777  56889999999999999998754  589998 79999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.34  E-value=2e-11  Score=97.19  Aligned_cols=129  Identities=17%  Similarity=0.208  Sum_probs=95.7

Q ss_pred             cCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCC
Q 017536           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (369)
Q Consensus        49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  127 (369)
                      ++++++++++++.++++.|.+++++++||+| +|+++|+++..+++...........               ..+.....
T Consensus         1 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~---------------~~~~~~~~   65 (132)
T cd04636           1 KDVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFY---------------VTLLYSVI   65 (132)
T ss_pred             CCCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCccc---------------cccccccc
Confidence            3577899999999999999999999999998 6899999999998765321100000               00000000


Q ss_pred             hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHH
Q 017536          128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (369)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll  196 (369)
                      ...  ....+.+...++.++|.  +++..+.+++++.++++.|.+.+.+.+||+++|+++|++|..|++
T Consensus        66 ~~~--~~~~~~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~iGvit~~dl~  130 (132)
T cd04636          66 FLD--ESKIKKLLGKKVEEIMT--KKVITVDEDTTIEDVARIMSKKNIKRLPVVDDGKLVGIISRGDII  130 (132)
T ss_pred             ccc--hHHHHHHcCCCHHHhcc--CCceEECCCCcHHHHHHHHHHCCCCeeEEEECCEEEEEEEHHHhh
Confidence            000  12233344456888887  568899999999999999999999999999889999999999997

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.34  E-value=2.6e-11  Score=92.54  Aligned_cols=103  Identities=21%  Similarity=0.340  Sum_probs=88.1

Q ss_pred             cCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017536           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (369)
Q Consensus        49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  128 (369)
                      +++++++++.++.++++.|.+++...+||+++++++|+++..+++..                                 
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~g~v~~~~l~~~---------------------------------   48 (107)
T cd04610           2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDNGKVVGIVSARDLLGK---------------------------------   48 (107)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhhcc---------------------------------
Confidence            46788999999999999999888889999988999999999998631                                 


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                                ....+++++|.  ..+.++.+++++.++++.|.+++..++||++ +|+++|+++..|++
T Consensus        49 ----------~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~  105 (107)
T cd04610          49 ----------DPDETVEEIMS--KDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVI  105 (107)
T ss_pred             ----------CccccHHHhCC--CCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhh
Confidence                      00123566775  5688899999999999999999999999998 78999999999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=2.5e-11  Score=93.49  Aligned_cols=107  Identities=21%  Similarity=0.252  Sum_probs=89.4

Q ss_pred             CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017536           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (369)
Q Consensus        50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  128 (369)
                      ++.++++++++.++++.|.++++..+||++ +|+++|+++..++++.....                             
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~-----------------------------   52 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAG-----------------------------   52 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhcc-----------------------------
Confidence            567899999999999999999999999998 69999999999987642210                             


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                               .....++.++|.  .+++++.+++++.++++.|.+++...+||++ +|++.|++|..|++
T Consensus        53 ---------~~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~  110 (112)
T cd04624          53 ---------IDLDTPVSEIMT--RDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLV  110 (112)
T ss_pred             ---------CCCccCHHHhcc--CCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhc
Confidence                     011224666776  5688999999999999999999999999998 69999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.33  E-value=1.3e-11  Score=108.64  Aligned_cols=145  Identities=14%  Similarity=0.253  Sum_probs=115.6

Q ss_pred             CEEEEEcCCCcEEEEEeHHHHHHHHHhc-cCCCcccccccccc--cCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCe
Q 017536            7 DALLLTDSNALLCGILTDKDIATRVIAR-ELNLEETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGE   82 (369)
Q Consensus         7 ~~~~V~d~~~~~~Givt~~Di~~~~~~~-~~~~~~~~v~dim~--~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~   82 (369)
                      .++||....   .--+|.--++.+.+.. ...-+=..|.|+|.  ....++.+++++.+-.++-.+.++.++||+| ..+
T Consensus       156 ~~lPvlsts---YDTFTVAtmIN~Al~n~lIKkdI~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~k  232 (432)
T COG4109         156 KGLPVLSTS---YDTFTVATMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMK  232 (432)
T ss_pred             cCCceEEec---ccceeHHHHHHHHHHHhhhhhheeeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccce
Confidence            345555422   3345555555444442 22233367999998  5788999999999999999999999999999 689


Q ss_pred             EEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCc
Q 017536           83 VIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDT  162 (369)
Q Consensus        83 ~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~  162 (369)
                      ++|+++.+|++..                                           ....++..+|+  ++++++.+.++
T Consensus       233 vvGvVt~rDv~~~-------------------------------------------~~~t~ieKVMt--knp~tv~~~ts  267 (432)
T COG4109         233 VVGVVTMRDVLDK-------------------------------------------KPSTTIEKVMT--KNPITVRAKTS  267 (432)
T ss_pred             EEEEEEehhhhcC-------------------------------------------CCCccHHHHhc--cCCeeecccch
Confidence            9999999998643                                           33455777888  78999999999


Q ss_pred             HHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHH
Q 017536          163 VLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRV  199 (369)
Q Consensus       163 l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~  199 (369)
                      +..+.+.|...++..+||++ +.+++|+||++|++..+
T Consensus       268 VAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~l  305 (432)
T COG4109         268 VASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSL  305 (432)
T ss_pred             HHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHH
Confidence            99999999999999999999 89999999999998443

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=1.8e-11  Score=94.90  Aligned_cols=108  Identities=18%  Similarity=0.232  Sum_probs=86.5

Q ss_pred             CCeEEeCCCcHHHHHHHHHhCC-CeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017536           50 NPTFVLSDTLAVEALQKMVQGK-FRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (369)
Q Consensus        50 ~~i~v~~~~~l~~a~~~m~~~~-~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  128 (369)
                      ++.++.+++++.++++.|.+++ ...+||.++|+++|+++..+++.......                            
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~----------------------------   53 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEKGRLLGIFTERDIVRLTAIGK----------------------------   53 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCCCcEEEEEeHHHHHHHHhcCC----------------------------
Confidence            5678899999999999998888 67788888899999999999875421000                            


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCC--CcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPT--DTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~--~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                               .....++.++|.  .+++++.++  +++.++++.|.+++...+||++ +|+++|++|.+|++
T Consensus        54 ---------~~~~~~i~~~~~--~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~  113 (115)
T cd04620          54 ---------DLSDLPIGEVMT--QPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIR  113 (115)
T ss_pred             ---------CccccCHHHhcC--CCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhh
Confidence                     001234666776  457778776  7899999999999999999998 78999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=2.1e-11  Score=95.51  Aligned_cols=117  Identities=23%  Similarity=0.359  Sum_probs=91.6

Q ss_pred             CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017536           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (369)
Q Consensus        50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  128 (369)
                      +++++.+++++.++++.|.+.+++.+||++ +|+++|+++..+++..........                  +.     
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~------------------~~-----   58 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDN------------------GE-----   58 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccc------------------cc-----
Confidence            577899999999999999999999999998 599999999999876532110000                  00     


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                       .    ..+.....++.++|.  .++.++++++++.++++.|.+.+.+.+||++ +|+++|++|..|++
T Consensus        59 -~----~~~~~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~  120 (122)
T cd04803          59 -E----SLTKERDVPVAEVMK--TDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFL  120 (122)
T ss_pred             -c----ccccccCcCHHHhhC--CCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhh
Confidence             0    001122345667776  5788999999999999999999999999998 58999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=2.7e-11  Score=93.49  Aligned_cols=110  Identities=24%  Similarity=0.295  Sum_probs=89.9

Q ss_pred             cCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017536           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (369)
Q Consensus        49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  128 (369)
                      ++++++++++++.+|++.|.+++++.+||+++|+++|+++..+++......                      +      
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~i~~~~l~~~~~~~----------------------~------   52 (113)
T cd04622           1 RDVVTVSPDDTIREAARLMREHDVGALPVCENDRLVGIVTDRDIVVRAVAE----------------------G------   52 (113)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEhHHHHHHHhhc----------------------c------
Confidence            357789999999999999999999999999999999999999986321100                      0      


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                              ......++.++|.  ..+.++.+++++.++++.|.+.+.+++||++ +++++|++|..|++
T Consensus        53 --------~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~  111 (113)
T cd04622          53 --------RDPDTTTVGDVMT--RGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLA  111 (113)
T ss_pred             --------CCcccCCHHHhcc--CCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhh
Confidence                    0011123667776  5688899999999999999999999999998 68999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.33  E-value=4.1e-11  Score=93.01  Aligned_cols=111  Identities=25%  Similarity=0.337  Sum_probs=94.2

Q ss_pred             cccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCC
Q 017536           45 KVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTS  124 (369)
Q Consensus        45 dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  124 (369)
                      ++|.++++++.++.++.+|...|.++++..+||++.++++|+++..|++........                       
T Consensus         3 ~~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~~l~Giit~~di~~~~~~~~~-----------------------   59 (117)
T COG0517           3 DIMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDDGKLVGIITERDILRALAAGGK-----------------------   59 (117)
T ss_pred             ccccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHhccCC-----------------------
Confidence            455588999999999999999999999999999998899999999999876332100                       


Q ss_pred             CCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHH-cCCceEEEEe-CC-EEEEEeehHHH
Q 017536          125 ISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLE-LRLSSAVVTV-EN-KPRGILTSKDI  195 (369)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~-~~~~~~~V~d-~~-~~~Giit~~dl  195 (369)
                                     ...++.++|.  .++.++.++.++.++.+.|.+ ++.+.+||++ ++ +++|++|.+|+
T Consensus        60 ---------------~~~~v~~v~~--~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di  116 (117)
T COG0517          60 ---------------RLLPVKEVMT--KPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDI  116 (117)
T ss_pred             ---------------ccccHHHhcc--CCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHc
Confidence                           0004677777  478999999999999999999 7999999999 54 99999999997

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.33  E-value=2.9e-11  Score=93.02  Aligned_cols=105  Identities=16%  Similarity=0.202  Sum_probs=86.4

Q ss_pred             CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-C-CeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCC
Q 017536           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (369)
Q Consensus        50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~-~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  127 (369)
                      +++++++++++.+|++.|.++++..+||++ + |+++|+++..+++......                            
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~----------------------------   53 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEG----------------------------   53 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcC----------------------------
Confidence            567899999999999999999999999998 5 8999999999987642100                            


Q ss_pred             hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                                 ....++.++|.   ++.++.+++++.++++.|.+++.+.+||++ +|+++|++|.+|++
T Consensus        54 -----------~~~~~~~~~~~---~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~  109 (111)
T cd04590          54 -----------EEDLDLRDLLR---PPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDIL  109 (111)
T ss_pred             -----------CCcCCHHHHhc---CCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhh
Confidence                       00012334443   478899999999999999999999999998 69999999999986

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.32  E-value=2.2e-11  Score=93.94  Aligned_cols=109  Identities=16%  Similarity=0.209  Sum_probs=89.7

Q ss_pred             CCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChh
Q 017536           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN  129 (369)
Q Consensus        50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  129 (369)
                      +++++.+++++.++++.|.+++.+.+||+++++++|+++..+++......                      +       
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~----------------------~-------   52 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDGNKLVGIFTSKDIALRVVAQ----------------------G-------   52 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHHhc----------------------C-------
Confidence            56788999999999999999999999999889999999999987532210                      0       


Q ss_pred             hHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       130 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                             ......++.++|.  ..+.++++++++.++++.|.+++..++||++ +++++|++|.+|++
T Consensus        53 -------~~~~~~~v~~i~~--~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~  111 (113)
T cd04587          53 -------LDPESTLVERVMT--PNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLT  111 (113)
T ss_pred             -------CCcCcCCHHHhcC--CCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhc
Confidence                   0001134667776  5688899999999999999999999999998 68999999999986

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.32  E-value=2e-11  Score=96.42  Aligned_cols=121  Identities=20%  Similarity=0.267  Sum_probs=88.5

Q ss_pred             CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017536           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (369)
Q Consensus        50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  128 (369)
                      .+.++++++++.+|++.|.++++..+||+| +|+++|+++..|++...........                      .+
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~----------------------~~   59 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLLL----------------------YR   59 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcchhhc----------------------cc
Confidence            567899999999999999999999999998 6899999999998765321100000                      00


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                      ......+...  .....+.|.  .++.++++++++.++++.|.+++.+++||++ +++++|++|..|++
T Consensus        60 ~~~~~~~~~~--~~~~~~~~~--~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil  124 (126)
T cd04642          60 TITFKELSEK--FTDSDGVKS--RPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDII  124 (126)
T ss_pred             chhhhhhhhh--ccccccccc--CCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHh
Confidence            0000000000  011223444  5688999999999999999999999999998 68999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.32  E-value=6.3e-11  Score=92.81  Aligned_cols=118  Identities=27%  Similarity=0.295  Sum_probs=90.8

Q ss_pred             CCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChh
Q 017536           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN  129 (369)
Q Consensus        50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  129 (369)
                      +++++++++++.++++.|.++++..+||+|+|+++|+++..++.+..........+.                       
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~~~~~~~~~~~-----------------------   58 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVEDNELVGVISDRDYLKAISPFLGTAGET-----------------------   58 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeCCeEEEEEEHHHHHHHHHHHhccccch-----------------------
Confidence            577899999999999999999999999999899999999999876533211000000                       


Q ss_pred             hHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       130 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                        ....  .....++.++|.  .+++++++++++.++++.|.+++...+||++ +++++|+++..|++
T Consensus        59 --~~~~--~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll  120 (122)
T cd04637          59 --EKDL--ATLNRRAHQIMT--RDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLL  120 (122)
T ss_pred             --HHHH--HHHHhHHHHhhc--CCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhh
Confidence              0000  000113556665  5688999999999999999999999999998 68999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.32  E-value=1.2e-10  Score=112.03  Aligned_cols=114  Identities=10%  Similarity=0.070  Sum_probs=97.8

Q ss_pred             ccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeC----CeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHH
Q 017536           44 SKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK  119 (369)
Q Consensus        44 ~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~----~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (369)
                      ...|.++++++.+++++.+|+++|.+++++.+||+|+    ++++|+++..|+....                       
T Consensus       103 ~~gmi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~-----------------------  159 (505)
T PLN02274        103 RVGFVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN-----------------------  159 (505)
T ss_pred             cccccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc-----------------------
Confidence            3347789999999999999999999999999999985    7999999999985310                       


Q ss_pred             hcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHH
Q 017536          120 HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMR  198 (369)
Q Consensus       120 ~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~  198 (369)
                                         ....++.++|++...++++++++++.++++.|.+++...+||++ +++++|+||.+|+++.
T Consensus       160 -------------------~~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~  220 (505)
T PLN02274        160 -------------------DRETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRV  220 (505)
T ss_pred             -------------------ccCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHH
Confidence                               12345888998544588999999999999999999999999998 8999999999999843


Q ss_pred             H
Q 017536          199 V  199 (369)
Q Consensus       199 ~  199 (369)
                      .
T Consensus       221 ~  221 (505)
T PLN02274        221 K  221 (505)
T ss_pred             h
Confidence            3

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.32  E-value=5.7e-11  Score=114.32  Aligned_cols=114  Identities=10%  Similarity=0.158  Sum_probs=99.1

Q ss_pred             ccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeC----CeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhH
Q 017536           42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV  117 (369)
Q Consensus        42 ~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~----~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~  117 (369)
                      +..+.|..+++++++++++.+|+++|.+++++.+||+++    ++++|+++.+|+...                      
T Consensus        97 ~~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~----------------------  154 (495)
T PTZ00314         97 RFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFV----------------------  154 (495)
T ss_pred             ccccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhc----------------------
Confidence            356778889999999999999999999999999999985    799999999997521                      


Q ss_pred             HHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          118 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       118 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                                          .....+++++|++..++++++++.++.+++++|.+++...+||++ +++++|+||.+|++
T Consensus       155 --------------------~~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl  214 (495)
T PTZ00314        155 --------------------KDKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLK  214 (495)
T ss_pred             --------------------ccCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhh
Confidence                                011345888998545799999999999999999999999999999 88999999999998


Q ss_pred             H
Q 017536          197 M  197 (369)
Q Consensus       197 ~  197 (369)
                      +
T Consensus       215 ~  215 (495)
T PTZ00314        215 K  215 (495)
T ss_pred             h
Confidence            3

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.32  E-value=2.4e-11  Score=93.80  Aligned_cols=109  Identities=22%  Similarity=0.260  Sum_probs=90.2

Q ss_pred             cCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCC
Q 017536           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (369)
Q Consensus        49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  127 (369)
                      +++.++.+++++.++++.|.++++..+||++ +|+++|+++..+++......                            
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~----------------------------   52 (114)
T cd04613           1 RDVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDP----------------------------   52 (114)
T ss_pred             CCceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhcc----------------------------
Confidence            3577899999999999999999999999998 58999999999987541100                            


Q ss_pred             hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeC--CEEEEEeehHHHH
Q 017536          128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVE--NKPRGILTSKDIL  196 (369)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~--~~~~Giit~~dll  196 (369)
                               ......++.++|.  .++.++++++++.++++.|.+.+.+.+||+++  ++++|++|.+|++
T Consensus        53 ---------~~~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~  112 (114)
T cd04613          53 ---------SLYDLVVASDIMT--KPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLL  112 (114)
T ss_pred             ---------cccccEEHHHhcc--CCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhh
Confidence                     0011234667776  56899999999999999999999999999986  8999999999986

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.31  E-value=2.2e-11  Score=96.21  Aligned_cols=116  Identities=21%  Similarity=0.270  Sum_probs=85.6

Q ss_pred             CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017536           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (369)
Q Consensus        50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  128 (369)
                      +++++.+++++.+|++.|.+++.+.+||++ +|+++|+++..|+......+....                  +      
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~------------------~------   57 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQE------------------G------   57 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHH------------------c------
Confidence            467899999999999999999999999998 689999999999875311000000                  0      


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEe----CCCCcHHHHHHHHHHcCCceEEEEe-C-CEEEEEeehHHHH
Q 017536          129 NTFIETLRERMFRPSLSTIIPEKSKVVTI----SPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDIL  196 (369)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v----~~~~~l~~~~~~m~~~~~~~~~V~d-~-~~~~Giit~~dll  196 (369)
                             .......+++++|.+....+.+    .+++++.++++.|.+++.+.+||++ + |+++|+||.+|++
T Consensus        58 -------~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~  124 (126)
T cd04640          58 -------GISRSELTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIA  124 (126)
T ss_pred             -------CCCchheEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHh
Confidence                   0001123466777631112233    2688999999999999999999999 5 7999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.31  E-value=4.9e-11  Score=94.34  Aligned_cols=121  Identities=30%  Similarity=0.366  Sum_probs=91.2

Q ss_pred             CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017536           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (369)
Q Consensus        50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  128 (369)
                      ++.++.+++++.+|++.|.+.+++.+||++ +|+++|+++..+++............                       
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~-----------------------   58 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKART-----------------------   58 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcch-----------------------
Confidence            567889999999999999999999999998 69999999999987643211000000                       


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe---CCEEEEEeehHHHH
Q 017536          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDIL  196 (369)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d---~~~~~Giit~~dll  196 (369)
                      ..... -.......++.++|.  .++++++++.++.++++.|.+.+...+||++   +++++|+||.+|++
T Consensus        59 ~~~~~-~~~~~~~~~~~~~~~--~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~  126 (128)
T cd04632          59 GDRSG-EKERMLDLPVYDAMS--SPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVL  126 (128)
T ss_pred             hhhhh-hhhhhccCcHHHHhc--CCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhh
Confidence            00000 001122345777886  5688999999999999999999999999985   48999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.30  E-value=3.3e-11  Score=96.00  Aligned_cols=98  Identities=30%  Similarity=0.301  Sum_probs=78.7

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCcc----------cccccccc------
Q 017536          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPAD----------STLVEKVM------  215 (369)
Q Consensus       153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~----------~~~v~~~m------  215 (369)
                      ++.++++++++.+|++.|.+.+.+++||+| +|+++|++|.+|+++..........          ...+.++|      
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~   81 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGISY   81 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhhhh
Confidence            578899999999999999999999999999 7999999999999844432221100          01133454      


Q ss_pred             ---ccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCC
Q 017536          216 ---TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDG  250 (369)
Q Consensus       216 ---~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g  250 (369)
                         .++++++++++++.+|++.|.+++.+.+||+|+.+
T Consensus        82 ~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~  119 (133)
T cd04592          82 GGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGV  119 (133)
T ss_pred             cccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCc
Confidence               46788999999999999999999999999999654

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.30  E-value=6.3e-11  Score=95.79  Aligned_cols=140  Identities=18%  Similarity=0.228  Sum_probs=94.6

Q ss_pred             cCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHH-HHHhhhhHHHHHHHhHHHhcCCCCCC
Q 017536           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARME-RAAEKGKAIAAAVEGVEKHWGTSISG  127 (369)
Q Consensus        49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~  127 (369)
                      ++++++++++++.++++.|.++++..+||+++++++|+++..++++....... .................     .+..
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~   75 (143)
T cd04634           1 KNPITCNADDTISDAARLLRENKISGAPVLDGGKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLR-----EFIN   75 (143)
T ss_pred             CCcEEecCCCCHHHHHHHHHHcCCCcceEeECCeEEEEecHHHHHHHHHhccCccccccCCcceeeeccch-----heee
Confidence            46788999999999999999999999999988999999999998765322110 00000000000000000     0000


Q ss_pred             hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHH
Q 017536          128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (369)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll  196 (369)
                      ......... .....++.++|.  .++.++++++++.++++.|.+.+.+.+||++.++++|+++.+|++
T Consensus        76 ~~~~~~~~~-~~~~~~v~~~~~--~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~~~~~Gvvt~~dl~  141 (143)
T cd04634          76 WEETKRALT-DAGKMKVRDIMT--KKVITISPDASIEDAAELMVRHKIKRLPVVEDGRLVGIVTRGDII  141 (143)
T ss_pred             hHHHHHHHH-HHhcCCHHHHcC--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHhh
Confidence            000001111 123345778886  578999999999999999999999999999888999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=99.30  E-value=1.2e-10  Score=110.89  Aligned_cols=140  Identities=16%  Similarity=0.282  Sum_probs=114.1

Q ss_pred             EEEEeHHHHHHHHHhccCCCccccccccccc--CCeEEeCCCcHHHHHHHHHhCCCeEeeEee--CCeEEEEEehHHHHH
Q 017536           19 CGILTDKDIATRVIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLY   94 (369)
Q Consensus        19 ~Givt~~Di~~~~~~~~~~~~~~~v~dim~~--~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~~~vGiv~~~dil~   94 (369)
                      .|.++..+  +.++.+-.++.+.+|+++|++  ++.+++.+.++.++.+.+.+++++++||++  .+.++|++..+|++.
T Consensus       186 ~g~~~~~E--~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~  263 (429)
T COG1253         186 EGVLEEEE--REMINNVLDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLR  263 (429)
T ss_pred             cCCcCHHH--HHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHH
Confidence            57777777  466777789999999999995  678899999999999999999999999998  388999999999987


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcC
Q 017536           95 DAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELR  174 (369)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~  174 (369)
                      .......                                       .......+   .+++.++++.++.++++.|++.+
T Consensus       264 ~~~~~~~---------------------------------------~~~~~~~~---~~~~~Vpet~~~~~lL~~~r~~~  301 (429)
T COG1253         264 ALLDGQS---------------------------------------DLDLRVLV---RPPLFVPETLSLSDLLEEFREER  301 (429)
T ss_pred             HHhcCcc---------------------------------------ccchhhcc---cCCeEecCCCcHHHHHHHHHHhC
Confidence            6332100                                       00011111   25899999999999999999999


Q ss_pred             CceEEEEe-CCEEEEEeehHHHHHHHHhc
Q 017536          175 LSSAVVTV-ENKPRGILTSKDILMRVISQ  202 (369)
Q Consensus       175 ~~~~~V~d-~~~~~Giit~~dll~~~~~~  202 (369)
                      .+...|+| .|.+.|++|..|++..+..+
T Consensus       302 ~hmAiVvDEyG~~~GlVTleDIiEeIvGe  330 (429)
T COG1253         302 THMAIVVDEYGGVEGLVTLEDIIEEIVGE  330 (429)
T ss_pred             CeEEEEEEcCCCeEEEeEHHHHHHHHhCC
Confidence            99999999 79999999999999666654

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.30  E-value=6.1e-11  Score=91.81  Aligned_cols=104  Identities=15%  Similarity=0.251  Sum_probs=85.0

Q ss_pred             cCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeC----CeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCC
Q 017536           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTS  124 (369)
Q Consensus        49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~----~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  124 (369)
                      .+++++.+++++.++++.|.++++..+||+|+    |+++|+++..+++...                            
T Consensus         2 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~----------------------------   53 (114)
T cd04602           2 TDPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLT----------------------------   53 (114)
T ss_pred             CCCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhh----------------------------
Confidence            35678899999999999999999999999984    8999999988875320                            


Q ss_pred             CCChhhHHHHHHHHhCCCCccccccCCCceeEe--CCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          125 ISGPNTFIETLRERMFRPSLSTIIPEKSKVVTI--SPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v--~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                                    ....+++++|.+  ...++  ++++++.++++.|.+++...+||++ +++++|++|.+|++
T Consensus        54 --------------~~~~~v~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~  112 (114)
T cd04602          54 --------------DSETPLSEVMTP--REVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLK  112 (114)
T ss_pred             --------------ccCCCHHHhcCC--CceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhh
Confidence                          011236677763  44455  4499999999999999999999998 78999999999986

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.30  E-value=3.5e-11  Score=92.93  Aligned_cols=108  Identities=19%  Similarity=0.280  Sum_probs=89.0

Q ss_pred             CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017536           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (369)
Q Consensus        50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  128 (369)
                      ++.++++++++.++++.|.+.+.+.+||++ +|+++|+++..+++.......                            
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~----------------------------   54 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGL----------------------------   54 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccC----------------------------
Confidence            456789999999999999888899999998 689999999988875422100                            


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                               .....++.++|.  .++.++++++++.++++.|.+++...+||++ +++++|++|..|++
T Consensus        55 ---------~~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~  112 (114)
T cd04604          55 ---------DILTLPVADVMT--RNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLL  112 (114)
T ss_pred             ---------ccccCCHHHhhc--cCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhh
Confidence                     011234677776  4678899999999999999999999999998 89999999999996

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.29  E-value=3.5e-11  Score=115.07  Aligned_cols=114  Identities=20%  Similarity=0.301  Sum_probs=98.4

Q ss_pred             ccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-C---CeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhH
Q 017536           42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N---GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV  117 (369)
Q Consensus        42 ~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~---~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~  117 (369)
                      +..+.|.++++++++++++.++++.|.+++++++||+| +   ++++|+++.+|++...                     
T Consensus        81 ~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~---------------------  139 (450)
T TIGR01302        81 RAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVK---------------------  139 (450)
T ss_pred             cccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhh---------------------
Confidence            45778889999999999999999999999999999998 4   5999999999986320                     


Q ss_pred             HHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          118 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       118 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                                           ....+++++|.+ .+++++++++++.++++.|.+++.+.+||+| +|+++|++|.+|++
T Consensus       140 ---------------------~~~~~V~dvm~~-~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl  197 (450)
T TIGR01302       140 ---------------------DKGKPVSEVMTR-EEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIV  197 (450)
T ss_pred             ---------------------cCCCCHHHhhCC-CCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhh
Confidence                                 012357778863 3799999999999999999999999999999 89999999999998


Q ss_pred             HH
Q 017536          197 MR  198 (369)
Q Consensus       197 ~~  198 (369)
                      +.
T Consensus       198 ~~  199 (450)
T TIGR01302       198 KR  199 (450)
T ss_pred             hc
Confidence            43

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.29  E-value=4.2e-11  Score=93.80  Aligned_cols=118  Identities=23%  Similarity=0.401  Sum_probs=91.2

Q ss_pred             cCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCC
Q 017536           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (369)
Q Consensus        49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  127 (369)
                      ++++++.+++++.++++.|.+++++.+||+| +|+++|+++..+++.........                         
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~-------------------------   55 (122)
T cd04635           1 REPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSV-------------------------   55 (122)
T ss_pred             CCCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccc-------------------------
Confidence            3577899999999999999999999999998 69999999999987541100000                         


Q ss_pred             hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                       ..  ..........++.++|.  .++.++++++++.++++.|.+.+.+.+||++ +|+++|++|..|++
T Consensus        56 -~~--~~~~~~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~  120 (122)
T cd04635          56 -ED--QQRTQTKASPTVEKIMS--TPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVL  120 (122)
T ss_pred             -cc--hhhhhhhccCcHHHHhc--CCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhh
Confidence             00  00000112334667776  5688999999999999999999999999998 78999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.28  E-value=8.4e-11  Score=91.86  Aligned_cols=117  Identities=26%  Similarity=0.360  Sum_probs=91.0

Q ss_pred             CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017536           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (369)
Q Consensus        50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  128 (369)
                      ++.++++++++.+|++.|.+.+++.+||+| +|+++|+++..+++..........                         
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~-------------------------   56 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTL-------------------------   56 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccc-------------------------
Confidence            567889999999999999999999999998 599999999999865421110000                         


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHH
Q 017536          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (369)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll  196 (369)
                        ..... ......++.++|.  ..+.++++++++.++++.|.+.+.+.+||+++++++|+++.+|++
T Consensus        57 --~~~~~-~~~~~~~v~~~~~--~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Gvv~~~di~  119 (121)
T cd04584          57 --SEHEL-YLLLKMPVKEIMT--KDVITVHPLDTVEEAALLMREHRIGCLPVVEDGRLVGIITETDLL  119 (121)
T ss_pred             --hhhhh-hhhcCcCHHHHhh--CCCeEECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHhh
Confidence              00000 1122345667776  568899999999999999999999999999889999999999986

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=99.27  E-value=1.1e-11  Score=110.87  Aligned_cols=107  Identities=32%  Similarity=0.398  Sum_probs=97.3

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCCceEEEEe----CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCC
Q 017536          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV----ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTP  227 (369)
Q Consensus       152 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d----~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~  227 (369)
                      .++++++|+.++.++++....+++..+||++    +.+++|+||.+|+  .++.+    ....++++|++.+++.+.+.+
T Consensus       116 ~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi--~f~~~----~~~~~~~vmt~~~~~~~~gi~  189 (503)
T KOG2550|consen  116 NNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDI--QFLED----NSLLVSDVMTKNPVTGAQGIT  189 (503)
T ss_pred             cCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhh--hhhhc----ccchhhhhccccccccccccc
Confidence            4688899999999999999999999999996    5789999999999  45422    267899999999999999999


Q ss_pred             HHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHH
Q 017536          228 IVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (369)
Q Consensus       228 l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~  264 (369)
                      +.++.+.+.+++...+||||++|+++-++++.||.+.
T Consensus       190 l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~  226 (503)
T KOG2550|consen  190 LKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKN  226 (503)
T ss_pred             HHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhh
Confidence            9999999999999999999999999999999999983

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.27  E-value=9e-11  Score=89.51  Aligned_cols=97  Identities=18%  Similarity=0.226  Sum_probs=84.6

Q ss_pred             CCeEEeCCCcHHHHHHHHHhCCCeEeeEeeC----CeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCC
Q 017536           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSI  125 (369)
Q Consensus        50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~----~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  125 (369)
                      ....+.+++++.++.+.|.++++..+||+++    |+++|+++..++.....                            
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~----------------------------   54 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALK----------------------------   54 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHH----------------------------
Confidence            4567899999999999999999999999985    89999999999865410                            


Q ss_pred             CChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHH
Q 017536          126 SGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (369)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll  196 (369)
                                 .         +|.  .++.++++++++.++++.|.+++.+.+||+++|+++|++|.+|++
T Consensus        55 -----------~---------~m~--~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~~~~~~Gvvt~~dl~  103 (105)
T cd04591          55 -----------N---------YID--PSPFTVSPRTSLEKVHQLFRKLGLRHLLVVDEGRLVGIITRKDLL  103 (105)
T ss_pred             -----------H---------hcc--CCCceECCCCcHHHHHHHHHHcCCCEEEEEECCeEEEEEEhhhhh
Confidence                       0         444  468899999999999999999999999999999999999999996

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.26  E-value=5.7e-11  Score=91.11  Aligned_cols=104  Identities=23%  Similarity=0.359  Sum_probs=85.4

Q ss_pred             cCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCC
Q 017536           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (369)
Q Consensus        49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  127 (369)
                      +++.++.+++++.++++.|.++++..+||+| +|+++|+++..+++...                               
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~-------------------------------   50 (110)
T cd04601           2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFET-------------------------------   50 (110)
T ss_pred             CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeecc-------------------------------
Confidence            4677899999999999999999999999998 58999999988875310                               


Q ss_pred             hhhHHHHHHHHhCCCCccccccCCCceeEeCC-CCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISP-TDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~-~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                                 ....++.++|.  ..+..+.+ ++++.++++.|.+.+.+.+||++ +++++|++|.+|++
T Consensus        51 -----------~~~~~v~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil  108 (110)
T cd04601          51 -----------DLDKPVSEVMT--PENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIE  108 (110)
T ss_pred             -----------cCCCCHHHhcc--cCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhh
Confidence                       01224566665  34555555 99999999999999999999998 79999999999986

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.26  E-value=3.1e-11  Score=108.32  Aligned_cols=111  Identities=16%  Similarity=0.198  Sum_probs=94.6

Q ss_pred             cccccccccC-CeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHH
Q 017536           41 TPVSKVMTRN-PTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE  118 (369)
Q Consensus        41 ~~v~dim~~~-~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~  118 (369)
                      .+++++|.++ +.++.+++++.++++.|.+.+++.+||+| +|+++|+++..|++.....                    
T Consensus       155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~--------------------  214 (268)
T TIGR00393       155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLG--------------------  214 (268)
T ss_pred             hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhc--------------------
Confidence            6789999988 99999999999999999999999999998 7999999999998753110                    


Q ss_pred             HhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEee
Q 017536          119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILT  191 (369)
Q Consensus       119 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit  191 (369)
                                        ......+++++|.  .+++++++++++.++++.|.+++...+||++ +|+++|+|+
T Consensus       215 ------------------~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~  268 (268)
T TIGR00393       215 ------------------GGSLKSEVRDFMT--LGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH  268 (268)
T ss_pred             ------------------CCcccCcHHHhCC--CCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence                              0011245778887  5688999999999999999999999999998 789999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.24  E-value=6.8e-11  Score=90.71  Aligned_cols=98  Identities=21%  Similarity=0.292  Sum_probs=81.7

Q ss_pred             EeCCCcHHHHHHHHHhCC-----CeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCC
Q 017536           54 VLSDTLAVEALQKMVQGK-----FRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (369)
Q Consensus        54 v~~~~~l~~a~~~m~~~~-----~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  127 (369)
                      +.+++++.++++.|.+++     +..+||+| +|+++|+++..+++..                                
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~--------------------------------   49 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA--------------------------------   49 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcC--------------------------------
Confidence            578899999999998877     47899998 6899999998887531                                


Q ss_pred             hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                                 ....++.++|.  .++.++.+++++.++++.|.+.+...+||++ +++++|++|..|++
T Consensus        50 -----------~~~~~v~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll  106 (109)
T cd04606          50 -----------DPDTPVSDIMD--TDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVI  106 (109)
T ss_pred             -----------CCcchHHHHhC--CCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhh
Confidence                       00123555665  4688999999999999999999999999998 79999999999997

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.24  E-value=2.1e-10  Score=87.51  Aligned_cols=102  Identities=26%  Similarity=0.353  Sum_probs=85.2

Q ss_pred             CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017536           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (369)
Q Consensus        50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  128 (369)
                      ++.++.+++++.+++..|.+.++..+||++ +++++|+++..+++...                                
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~--------------------------------   49 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNP--------------------------------   49 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhcc--------------------------------
Confidence            567889999999999999999999999998 58999999999886420                                


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHH
Q 017536          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (369)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll  196 (369)
                                 ...++.++|.  .++.++++++++.++++.|.+.+...+||+++++++|++|.+|++
T Consensus        50 -----------~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~~~~G~it~~d~~  104 (106)
T cd04638          50 -----------EEEQLALLMT--RDPPTVSPDDDVKEAAKLMVENNIRRVPVVDDGKLVGIVTVADIV  104 (106)
T ss_pred             -----------ccchHHHHhc--CCCceECCCCCHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHhh
Confidence                       0011334454  468889999999999999999999999999978999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.22  E-value=1.2e-10  Score=112.52  Aligned_cols=118  Identities=25%  Similarity=0.343  Sum_probs=96.3

Q ss_pred             CcccccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 017536           38 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG  116 (369)
Q Consensus        38 ~~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~  116 (369)
                      +...+++++|.+++.++.+++++.++++.|.++++..+||+| +++++|+++..|++......                 
T Consensus       332 l~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~-----------------  394 (454)
T TIGR01137       332 LKNATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAG-----------------  394 (454)
T ss_pred             hccCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhcc-----------------
Confidence            556789999999999999999999999999999999999998 68999999999987642210                 


Q ss_pred             HHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHH
Q 017536          117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (369)
Q Consensus       117 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll  196 (369)
                                          ......++.++|.  .++.++++++++.++++.|.+++  ..+|+++++++|+||.+|++
T Consensus       395 --------------------~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~~~~~~--~~vV~~~g~liGvvt~~dll  450 (454)
T TIGR01137       395 --------------------KANPDDAVSKVMS--KKFIQIGEGEKLSDLSKFLEKNS--SAIVTEEGKPIGVVTKIDLL  450 (454)
T ss_pred             --------------------CCCcCCCHHHhcC--CCCeEECCcCcHHHHHHHHHHCC--eeEEEECCEEEEEEEHHHHH
Confidence                                0011234777886  56889999999999999998754  34555589999999999998

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=99.22  E-value=9.4e-11  Score=110.14  Aligned_cols=116  Identities=19%  Similarity=0.292  Sum_probs=103.7

Q ss_pred             CCCccccccCCCceeEeCCCCcHHHHHHHHHHc-----CCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccc
Q 017536          141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLEL-----RLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKV  214 (369)
Q Consensus       141 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~-----~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~  214 (369)
                      ..+++.+|+  .++++++++.|+.+++..+++.     ....+.|+| ++++.|+++.++++       ....+.++.++
T Consensus       131 e~taG~~Mt--~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll-------~a~~~~~i~~i  201 (451)
T COG2239         131 EDTAGRIMT--TEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLL-------TAEPDELLKDL  201 (451)
T ss_pred             hhhhhccce--eeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHh-------cCCcHhHHHHH
Confidence            457889999  7899999999999999999854     356788999 88899999999997       11236789999


Q ss_pred             cccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHH
Q 017536          215 MTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (369)
Q Consensus       215 m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~  265 (369)
                      |.+.++++.++++.+++.+.|.+++.-.+||||++++++|+||..|++..+
T Consensus       202 m~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi  252 (451)
T COG2239         202 MEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVI  252 (451)
T ss_pred             hcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998765

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.22  E-value=2.4e-10  Score=87.53  Aligned_cols=106  Identities=24%  Similarity=0.312  Sum_probs=84.4

Q ss_pred             CCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChh
Q 017536           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN  129 (369)
Q Consensus        50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  129 (369)
                      +++++++++++.++++.|.+++++.+||+++|+++|+++..++.+......                             
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~~-----------------------------   52 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDDGRVVGSIDESDLLDALIEGK-----------------------------   52 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeCCeeEEEEeHHHHHHHHhccc-----------------------------
Confidence            567889999999999999999999999998899999999999876522100                             


Q ss_pred             hHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       130 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                              .....++.++|.  .++.++++++++.++.+.|.+ .. .+||++ +++++|++|.+|++
T Consensus        53 --------~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~-~~-~~~vv~~~~~~~Gvvt~~di~  108 (110)
T cd04609          53 --------AKFSLPVREVMG--EPLPTVDPDAPIEELSELLDR-GN-VAVVVDEGGKFVGIITRADLL  108 (110)
T ss_pred             --------cccCcCHHHHhc--CCCceeCCCCcHHHHHHHHHh-CC-ceeEEecCCeEEEEEeHHHhh
Confidence                    000233556665  568889999999999999988 33 467777 79999999999996

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>PF00571 CBS: CBS domain CBS domain web page

Probab=99.20  E-value=4.9e-11  Score=80.06  Aligned_cols=56  Identities=34%  Similarity=0.571  Sum_probs=53.0

Q ss_pred             cccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHH
Q 017536          211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (369)
Q Consensus       211 v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~  266 (369)
                      ++++|.++++++++++++.++++.|.+++.+++||+|++|+++|+||..||++++.
T Consensus         1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen    1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL   56 (57)
T ss_dssp             HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred             CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence            46789999999999999999999999999999999999999999999999999764

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.19  E-value=5.7e-10  Score=86.89  Aligned_cols=111  Identities=16%  Similarity=0.184  Sum_probs=86.9

Q ss_pred             CCeEEeCCCcHHHHHHHHHhCC-CeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017536           50 NPTFVLSDTLAVEALQKMVQGK-FRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (369)
Q Consensus        50 ~~i~v~~~~~l~~a~~~m~~~~-~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  128 (369)
                      ++.++++++++.++++.|...+ +..+||+++|+++|+++..+++.......                            
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~~l~~~~~~~~----------------------------   53 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDDGRPVGLIMREALMELLSTPY----------------------------   53 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEECCeeEEEEEHHHHHHHHhchh----------------------------
Confidence            5667899999999999998877 89999998899999999999875422100                            


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCc---eEEEEe-CCEEEEEeehHHHH
Q 017536          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLS---SAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~---~~~V~d-~~~~~Giit~~dll  196 (369)
                            ........++.++|.  .++..+++++++.++++.|.+++..   ..||++ +|+++|++|..|++
T Consensus        54 ------~~~~~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~  117 (119)
T cd04598          54 ------GRALYGKKPVSEVMD--PDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLL  117 (119)
T ss_pred             ------hHHHHcCCcHHHhcC--CCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHh
Confidence                  001122345778887  5788999999999999999988753   345666 89999999999986

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.16  E-value=9.1e-10  Score=84.22  Aligned_cols=108  Identities=27%  Similarity=0.339  Sum_probs=87.4

Q ss_pred             CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017536           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (369)
Q Consensus        50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  128 (369)
                      ++.++++++++.++++.|.+++...+||++ +++++|+++..+++.........                          
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~--------------------------   55 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLD--------------------------   55 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccCC--------------------------
Confidence            567889999999999999999999999998 58999999999987653211000                          


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                                 ....+.++|.  .++..++++.++.++++.|.+.+.+.+||++ +++++|+++.+|++
T Consensus        56 -----------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~  111 (113)
T cd02205          56 -----------PLVTVGDVMT--RDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDIL  111 (113)
T ss_pred             -----------ccccHHHHhc--CCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhh
Confidence                       0000334454  5688899999999999999999999999999 79999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=99.14  E-value=5.9e-10  Score=99.28  Aligned_cols=132  Identities=17%  Similarity=0.175  Sum_probs=106.4

Q ss_pred             hccCCCccccccccccc--CCeEEeCCCcHHHHHHHHHhCCCeEeeEeeC--CeEEEEEehHHHHHHHHHHHHHHHhhhh
Q 017536           33 ARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEKGK  108 (369)
Q Consensus        33 ~~~~~~~~~~v~dim~~--~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~~~vGiv~~~dil~~~~~~~~~~~~~~~  108 (369)
                      ..-.++++++|+|+|.+  ++..++.+++..+.++.+....+.++|++.+  +.++|++..+++++...+.-..      
T Consensus       192 ~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~------  265 (423)
T COG4536         192 LGVLDLENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEF------  265 (423)
T ss_pred             hcccccccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCcc------
Confidence            34568999999999985  6789999999999999999999999999963  6799999999999875432100      


Q ss_pred             HHHHHHHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEE
Q 017536          109 AIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPR  187 (369)
Q Consensus       109 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~  187 (369)
                                            ..+            +++.--.++.+++.++++.+-+..|.+++-+-..|+| .|.+.
T Consensus       266 ----------------------~k~------------d~~~~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~  311 (423)
T COG4536         266 ----------------------TKE------------DILRAADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQ  311 (423)
T ss_pred             ----------------------cHh------------HHHHHhcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEE
Confidence                                  001            1111114699999999999999999999888888999 89999


Q ss_pred             EEeehHHHHHHHHhcCC
Q 017536          188 GILTSKDILMRVISQNL  204 (369)
Q Consensus       188 Giit~~dll~~~~~~~~  204 (369)
                      |++|..|++........
T Consensus       312 GLVTLEDIlEEIVGdft  328 (423)
T COG4536         312 GLVTLEDILEEIVGDFT  328 (423)
T ss_pred             eeeeHHHHHHHHhcccc
Confidence            99999999977765543

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.05  E-value=1.1e-08  Score=94.86  Aligned_cols=107  Identities=19%  Similarity=0.201  Sum_probs=91.9

Q ss_pred             eeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHHH
Q 017536          154 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  232 (369)
Q Consensus       154 ~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~  232 (369)
                      .....++.+..++++.|...+...+.|++ ++++.|.++.+++. .....     ...+.+.+.....++++++++.+++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  325 (363)
T TIGR01186       252 PITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIK-QARKK-----AQGLQDVLIDDIYTVDAGTLLRETV  325 (363)
T ss_pred             ceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHH-HHhhc-----CCchhhhhccCCceECCCCcHHHHH
Confidence            34556777899999999999999999998 89999999999985 44432     2357777877888999999999999


Q ss_pred             HHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHH
Q 017536          233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (369)
Q Consensus       233 ~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~  267 (369)
                      ..|.+++.. +||+|++|+++|+||..++++++..
T Consensus       326 ~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~  359 (363)
T TIGR01186       326 RKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYD  359 (363)
T ss_pred             HHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence            999999998 9999999999999999999997754

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=99.00  E-value=2.3e-09  Score=100.89  Aligned_cols=120  Identities=21%  Similarity=0.288  Sum_probs=102.2

Q ss_pred             HhccCCCcccccccccccCCeEEeCCCcHHHHHHHHHhC-----CCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHh
Q 017536           32 IARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQG-----KFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAE  105 (369)
Q Consensus        32 ~~~~~~~~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~-----~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~  105 (369)
                      +.......+-++..+|+.+.+++.++.|+.+++..+++.     .+..+.|+| +++++|+++.++++..          
T Consensus       123 v~~~l~y~e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a----------  192 (451)
T COG2239         123 VRQLLSYPEDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTA----------  192 (451)
T ss_pred             HHHhcCCChhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcC----------
Confidence            334456667889999999999999999999999999853     467889999 7889999999998743          


Q ss_pred             hhhHHHHHHHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CC
Q 017536          106 KGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-EN  184 (369)
Q Consensus       106 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~  184 (369)
                                                       .....++++|.  ++++++.++++.+++.+.+.+++.-.+||+| ++
T Consensus       193 ---------------------------------~~~~~i~~im~--~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~  237 (451)
T COG2239         193 ---------------------------------EPDELLKDLME--DDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDN  237 (451)
T ss_pred             ---------------------------------CcHhHHHHHhc--ccceeecccCCHHHHHHHHHHhCCeecceECCCC
Confidence                                             01123567777  4599999999999999999999999999999 89


Q ss_pred             EEEEEeehHHHH
Q 017536          185 KPRGILTSKDIL  196 (369)
Q Consensus       185 ~~~Giit~~dll  196 (369)
                      +++|++|..|++
T Consensus       238 ~LiG~itiDDii  249 (451)
T COG2239         238 RLIGIITIDDII  249 (451)
T ss_pred             ceeeeeeHHHHH
Confidence            999999999998

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=98.99  E-value=4.6e-09  Score=83.62  Aligned_cols=114  Identities=15%  Similarity=-0.008  Sum_probs=77.1

Q ss_pred             CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017536           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (369)
Q Consensus        50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  128 (369)
                      ++.++.+++++.+|++.|.++++..+||+| +|+++|+++..|+++.........   .....       ..++      
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~---~~~~~-------~~~~------   65 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTR---VQPED-------ETKQ------   65 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccc---cccch-------hhcc------
Confidence            578899999999999999999999999998 699999999999887643210000   00000       0000      


Q ss_pred             hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe
Q 017536          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV  182 (369)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d  182 (369)
                       .....+.+.+....+.+.|.  .+++++.+++++.+|++.|.+++.+++||++
T Consensus        66 -~~~~~v~~i~~~~~~~~~~~--~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd  116 (133)
T cd04592          66 -TNTCLVSSVCTKGISYGGQE--CGLWTCTPDTDLTTAKKLMEAKGVKQLPVVK  116 (133)
T ss_pred             -cccccHHHHhhhhhhhcccC--CCCEEECCCCCHHHHHHHHHHcCCCcCCEec
Confidence             00000111111111223343  4688999999999999999999999999998

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.98  E-value=1.5e-09  Score=72.68  Aligned_cols=54  Identities=30%  Similarity=0.453  Sum_probs=50.8

Q ss_pred             cccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHH
Q 017536           43 VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDA   96 (369)
Q Consensus        43 v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~   96 (369)
                      |+++|.++++++++++++.++++.|.+++++++||+| +|+++|+++..|++++.
T Consensus         1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l   55 (57)
T PF00571_consen    1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKAL   55 (57)
T ss_dssp             HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHH
T ss_pred             CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhh
Confidence            5789999999999999999999999999999999997 79999999999998764

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.95  E-value=4.2e-08  Score=92.19  Aligned_cols=104  Identities=18%  Similarity=0.190  Sum_probs=89.6

Q ss_pred             eCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHHHHHH
Q 017536          157 ISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIM  235 (369)
Q Consensus       157 v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~  235 (369)
                      ..++.+..+++..|...+.++++|+| ++++.|+++.+++. +....     ...+.+.+.....++++++++.+++..+
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (400)
T PRK10070        290 KTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLK-TALTQ-----QQGLDAALIDAPLAVDAQTPLSELLSHV  363 (400)
T ss_pred             cCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHH-hhhhc-----CCchhhhhccCCceeCCCCCHHHHHHHH
Confidence            44677889999999999999999999 89999999999996 44332     2356777777889999999999999999


Q ss_pred             HhCCCceeeEEcCCCcEEEEEeHHHHHHHHHH
Q 017536          236 HDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (369)
Q Consensus       236 ~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~  267 (369)
                      .+.... +||||++|+++|+||..++++++.+
T Consensus       364 ~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~  394 (400)
T PRK10070        364 GQAPCA-VPVVDEDQQYVGIISKGMLLRALDR  394 (400)
T ss_pred             HhCCCc-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence            998776 9999999999999999999997743

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=98.83  E-value=1.2e-08  Score=85.27  Aligned_cols=127  Identities=16%  Similarity=0.188  Sum_probs=103.3

Q ss_pred             ccCCCccccccccccc--CCeEEeCCCcHHHHHHHHHhCCCeEeeEee--CCeEEEEEehHHHHHHHHHHHHHHHhhhhH
Q 017536           34 RELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAAEKGKA  109 (369)
Q Consensus        34 ~~~~~~~~~v~dim~~--~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~~~vGiv~~~dil~~~~~~~~~~~~~~~~  109 (369)
                      .-.++.+.+|+|+|.+  ..++++.+.++.+.+..+.+..++++||+.  .+.+.|++-.+|++..+...          
T Consensus        60 Gvm~iadl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~----------  129 (293)
T COG4535          60 GVMDIADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSD----------  129 (293)
T ss_pred             HHHHHHHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCC----------
Confidence            3446778899999985  678999999999999999999999999996  47899999999998762211          


Q ss_pred             HHHHHHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEE
Q 017536          110 IAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRG  188 (369)
Q Consensus       110 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~G  188 (369)
                                                   .....+.++.+   +.+.++++..+...++.++..+.+...|+| -|.+.|
T Consensus       130 -----------------------------~~~F~i~~lLR---Pav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsG  177 (293)
T COG4535         130 -----------------------------AEPFDIKELLR---PAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSG  177 (293)
T ss_pred             -----------------------------cccccHHHhcc---cceecccchhHHHHHHHHHhhcCceEEEEeccCCeee
Confidence                                         00112444554   488899999999999999999999999999 788999


Q ss_pred             EeehHHHHHHHHhc
Q 017536          189 ILTSKDILMRVISQ  202 (369)
Q Consensus       189 iit~~dll~~~~~~  202 (369)
                      ++|..|++......
T Consensus       178 LVTIEDiLEqIVGd  191 (293)
T COG4535         178 LVTIEDILEQIVGD  191 (293)
T ss_pred             eEEHHHHHHHHhcc
Confidence            99999999666544

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.82  E-value=1.1e-08  Score=96.79  Aligned_cols=125  Identities=13%  Similarity=0.200  Sum_probs=104.6

Q ss_pred             HhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe---C---CEEEEEeehHHHHHHHHhcCCCc-----
Q 017536          138 RMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---E---NKPRGILTSKDILMRVISQNLPA-----  206 (369)
Q Consensus       138 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d---~---~~~~Giit~~dll~~~~~~~~~~-----  206 (369)
                      .+.+.+++++|+  +++++++..+.+....+.+....++.+||+|   .   +++.|+|-+..++ .++.+....     
T Consensus       578 ~mr~L~a~ev~~--~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~-vlL~~~~f~~~~~~  654 (762)
T KOG0474|consen  578 YMRNLTAGEVMS--KPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLL-VLLKKRVFVEESRS  654 (762)
T ss_pred             HhhhhhHhhhcc--CCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHH-HHHHhhhhhccCcc
Confidence            345567899999  6899999999999999999999999999998   2   4688999999886 443321100     


Q ss_pred             ---------------------------------cccccccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEE
Q 017536          207 ---------------------------------DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV  253 (369)
Q Consensus       207 ---------------------------------~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~  253 (369)
                                                       .-..+..+|++.|+++++++++..++.+|++-+.+++.||+..++.+
T Consensus       655 ~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~  734 (762)
T KOG0474|consen  655 TFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVV  734 (762)
T ss_pred             ccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCcee
Confidence                                             01456678889999999999999999999999999999999999999


Q ss_pred             EEEeHHHHHHHH
Q 017536          254 DVVDVIHITHAA  265 (369)
Q Consensus       254 Givt~~di~~~~  265 (369)
                      |++|++|+..+-
T Consensus       735 gilTR~D~~~~~  746 (762)
T KOG0474|consen  735 GILTRKDLARYR  746 (762)
T ss_pred             EEEehhhhhhHH
Confidence            999999999654

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.62  E-value=7.3e-08  Score=91.24  Aligned_cols=156  Identities=16%  Similarity=0.124  Sum_probs=105.3

Q ss_pred             cccccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeC------CeEEEEEehHHHHHHHHHHHHHHHhhhhHHHH
Q 017536           39 EETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN------GEVIALLDIAKCLYDAIARMERAAEKGKAIAA  112 (369)
Q Consensus        39 ~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~------~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~  112 (369)
                      .+++++|+|++++++++.-+.+....+.+.++.++.+||+|+      +++.|++-+..++.-+.++........+....
T Consensus       580 r~L~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~  659 (762)
T KOG0474|consen  580 RNLTAGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLP  659 (762)
T ss_pred             hhhhHhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccccCcc
Confidence            357899999999999999999999999999999999999983      46788887777665544332221110000000


Q ss_pred             HHHh-HHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEe
Q 017536          113 AVEG-VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGIL  190 (369)
Q Consensus       113 ~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Gii  190 (369)
                      .... -...+....+...+..-.-.+.-....+..+|.  +.+.++++++++..+..+++.-+.+++.|+. ..+.+|++
T Consensus       660 ~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n--~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gil  737 (762)
T KOG0474|consen  660 VRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMN--PSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGIL  737 (762)
T ss_pred             hhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccC--CCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEE
Confidence            0000 000000111111111111122223345677887  5799999999999999999999999999998 77789999


Q ss_pred             ehHHHH
Q 017536          191 TSKDIL  196 (369)
Q Consensus       191 t~~dll  196 (369)
                      |++|+.
T Consensus       738 TR~D~~  743 (762)
T KOG0474|consen  738 TRKDLA  743 (762)
T ss_pred             ehhhhh
Confidence            999997

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.60  E-value=2.5e-06  Score=80.37  Aligned_cols=150  Identities=11%  Similarity=0.098  Sum_probs=104.4

Q ss_pred             cCEEEEEcCCCcEEEEEeHHHHHHH-------HHhccCCCc-ccccccccccCC---eEEeCCCcHHHHHHHHHhCCCeE
Q 017536            6 VDALLLTDSNALLCGILTDKDIATR-------VIARELNLE-ETPVSKVMTRNP---TFVLSDTLAVEALQKMVQGKFRH   74 (369)
Q Consensus         6 ~~~~~V~d~~~~~~Givt~~Di~~~-------~~~~~~~~~-~~~v~dim~~~~---i~v~~~~~l~~a~~~m~~~~~~~   74 (369)
                      .+.+.+.+ +|+++..-+..++...       .+....+.. -.++.++|.+.+   +...++.+..+++..|..++...
T Consensus       232 ~Dri~vL~-~G~i~~~g~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (400)
T PRK10070        232 GDRIAIMQ-NGEVVQVGTPDEILNNPANDYVRTFFRGVDISQVFSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREY  310 (400)
T ss_pred             CCEEEEEE-CCEEEecCCHHHHHhCcccHHHHHHHhccccccccchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCce
Confidence            35566665 5666655556665421       111111221 246677775433   23346678999999999999999


Q ss_pred             eeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCc
Q 017536           75 LPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSK  153 (369)
Q Consensus        75 lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~  153 (369)
                      ++|+| +++++|+++..++....-                                          ....+.+.+.  ..
T Consensus       311 ~~~~~~~~~~~g~~~~~~~~~~~~------------------------------------------~~~~~~~~~~--~~  346 (400)
T PRK10070        311 GYVIERGNKFVGAVSIDSLKTALT------------------------------------------QQQGLDAALI--DA  346 (400)
T ss_pred             EEEEcCCCcEEEEEeHHHHHhhhh------------------------------------------cCCchhhhhc--cC
Confidence            99998 799999999998754310                                          0112333443  45


Q ss_pred             eeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHh
Q 017536          154 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVIS  201 (369)
Q Consensus       154 ~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~  201 (369)
                      ..++++++++.+++..+.+.... +||+| +|+++|+|+..++++.+..
T Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~  394 (400)
T PRK10070        347 PLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDR  394 (400)
T ss_pred             CceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence            78899999999999999987766 99999 8999999999999844433

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.57  E-value=3.1e-06  Score=78.72  Aligned_cols=148  Identities=16%  Similarity=0.245  Sum_probs=104.3

Q ss_pred             cCEEEEEcCCCcEEEEEeHHHHHHHH-------HhccCCC-cccccccc---cccCCeEEeCCCcHHHHHHHHHhCCCeE
Q 017536            6 VDALLLTDSNALLCGILTDKDIATRV-------IARELNL-EETPVSKV---MTRNPTFVLSDTLAVEALQKMVQGKFRH   74 (369)
Q Consensus         6 ~~~~~V~d~~~~~~Givt~~Di~~~~-------~~~~~~~-~~~~v~di---m~~~~i~v~~~~~l~~a~~~m~~~~~~~   74 (369)
                      .+.+.+.+ +|+++..-|..++...-       +...... ......++   |........++.+..+++..|...+...
T Consensus       197 ~drI~vl~-~G~iv~~g~~~ei~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (363)
T TIGR01186       197 GDRIVIMK-AGEIVQVGTPDEILRNPANEYVEEFIGKVDLSQVFDAERIAQRMNTGPITKTADKGPRSALQLMRDERVDS  275 (363)
T ss_pred             CCEEEEEe-CCEEEeeCCHHHHHhCcccHHHHHHhhccchhcccchhhHhhhccccceeecCCCCHHHHHHHHHhcCCce
Confidence            45666775 67888877877775321       1111111 11222233   3333345667778999999999999999


Q ss_pred             eeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCc
Q 017536           75 LPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSK  153 (369)
Q Consensus        75 lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~  153 (369)
                      +.|+| ++++.|.++..++..+.-                                          ....+.+.+.  ..
T Consensus       276 ~~~~~~~~~~~g~~~~~~~~~~~~------------------------------------------~~~~~~~~~~--~~  311 (363)
T TIGR01186       276 LYVVDRQNKLVGVVDVESIKQARK------------------------------------------KAQGLQDVLI--DD  311 (363)
T ss_pred             EEEEcCCCCEEEEEeHHHHHHHhh------------------------------------------cCCchhhhhc--cC
Confidence            99998 799999999887654310                                          0112344444  46


Q ss_pred             eeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHH
Q 017536          154 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVI  200 (369)
Q Consensus       154 ~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~  200 (369)
                      +.++++++++.+++..|.+++.+ +||++ +|+++|+||..+++ ..+
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~-~~~  357 (363)
T TIGR01186       312 IYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLV-DAL  357 (363)
T ss_pred             CceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHH-HHH
Confidence            78899999999999999999998 99999 89999999999998 444

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.37  E-value=4.3e-06  Score=73.88  Aligned_cols=165  Identities=17%  Similarity=0.260  Sum_probs=115.2

Q ss_pred             ccCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCC
Q 017536           48 TRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (369)
Q Consensus        48 ~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  127 (369)
                      .+.+++++.+  +.||+++     -+++.++.+|+++-+-|..+++..-                               
T Consensus       215 ~KTIvFitHD--LdEAlri-----G~rIaimkdG~ivQ~Gtp~eIl~~P-------------------------------  256 (386)
T COG4175         215 KKTIVFITHD--LDEALRI-----GDRIAIMKDGEIVQVGTPEEILLNP-------------------------------  256 (386)
T ss_pred             CCeEEEEecC--HHHHHhc-----cceEEEecCCeEEEeCCHHHHHcCc-------------------------------
Confidence            3456666554  7777765     3567888999999999999987541                               


Q ss_pred             hhhHHHHHHHH---hCCCCccccccCCCceeEe-CCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhc
Q 017536          128 PNTFIETLRER---MFRPSLSTIIPEKSKVVTI-SPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQ  202 (369)
Q Consensus       128 ~~~~~~~~~~~---~~~~~v~~im~~~~~~~~v-~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~  202 (369)
                      .+++...+-+.   ..-.+..++|.+ .+..+. .+...-..++..+.......+.+++ +++.+|+++..+.. ..   
T Consensus       257 AndYV~~Fv~~v~~~~VltA~~IM~~-~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~-~~---  331 (386)
T COG4175         257 ANDYVRDFVRNVDRSRVLTAKDIMRR-PDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLV-KA---  331 (386)
T ss_pred             cHHHHHHHHhcCChhheeeHHHhhcc-cccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchh-cc---
Confidence            11222222221   112346788874 222222 2233345677777777777777777 77799999999885 11   


Q ss_pred             CCCccccccccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHH
Q 017536          203 NLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (369)
Q Consensus       203 ~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~  267 (369)
                                 .+..++.+++.++++.+.+....+.+.. ++|+|++|+++|+++...+++++.+
T Consensus       332 -----------~~~~~~~~v~~d~~~~~~~~~~~~~~~p-~aVvde~~r~vG~i~~~~vl~aL~~  384 (386)
T COG4175         332 -----------ALIDDVLTVDADTPLSEILARIRQAPCP-VAVVDEDGRYVGIISRGELLEALAR  384 (386)
T ss_pred             -----------cccccccccCccchHHHHHHHHhcCCCc-eeEEcCCCcEEEEecHHHHHHHHhc
Confidence                       3446778999999999999999988774 7899999999999999999987653

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.35  E-value=9e-07  Score=68.28  Aligned_cols=55  Identities=29%  Similarity=0.579  Sum_probs=51.4

Q ss_pred             cccccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          209 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       209 ~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      .++.++|.+++.++++++++.++++.|.+.+.+.+||+|++|+++|+||..||.+
T Consensus        58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~  112 (113)
T cd04597          58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE  112 (113)
T ss_pred             hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence            5688999889999999999999999999999999999999999999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.31  E-value=1.6e-06  Score=78.37  Aligned_cols=104  Identities=15%  Similarity=0.204  Sum_probs=89.7

Q ss_pred             cCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeC----CeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCC
Q 017536           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTS  124 (369)
Q Consensus        49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~----~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  124 (369)
                      .+++++.|+.++.++++...++++..+||.++    .+++|+|+.+|+-..                             
T Consensus       116 ~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~-----------------------------  166 (503)
T KOG2550|consen  116 NNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL-----------------------------  166 (503)
T ss_pred             cCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh-----------------------------
Confidence            47788999999999999999999999999974    689999999986321                             


Q ss_pred             CCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          125 ISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                                   .-....+.++|++  +.++.+.+.++.++-+++.+.+...+||++ +|+++.++++.|+.
T Consensus       167 -------------~~~~~~~~~vmt~--~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~  224 (503)
T KOG2550|consen  167 -------------EDNSLLVSDVMTK--NPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLM  224 (503)
T ss_pred             -------------hcccchhhhhccc--ccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhh
Confidence                         1123447889995  458899999999999999999999999999 99999999999996

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.17  E-value=3.5e-06  Score=64.97  Aligned_cols=53  Identities=26%  Similarity=0.412  Sum_probs=49.7

Q ss_pred             cccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHH
Q 017536           41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCL   93 (369)
Q Consensus        41 ~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil   93 (369)
                      .+++++|.+++.++.+++++.++++.|.+++++.+||+| +|+++|+++..++.
T Consensus        58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~  111 (113)
T cd04597          58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLA  111 (113)
T ss_pred             hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhh
Confidence            679999999999999999999999999999999999998 68999999999875

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=98.07  E-value=1.4e-05  Score=50.58  Aligned_cols=47  Identities=30%  Similarity=0.478  Sum_probs=42.7

Q ss_pred             CCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHH
Q 017536          218 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (369)
Q Consensus       218 ~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~  264 (369)
                      ++.++++++++.++++.|.+.+.+.+||+++++++.|+++..++.+.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~   47 (49)
T smart00116        1 DVVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKA   47 (49)
T ss_pred             CceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHh
Confidence            35678999999999999999999999999988999999999999864

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.95  E-value=0.00011  Score=70.38  Aligned_cols=111  Identities=11%  Similarity=0.181  Sum_probs=88.9

Q ss_pred             ceeEeCCC-CcHHHHHHHHHHcCCceEEEEe---CCEEEEEeehHHHHHHHHhcCCC----------------------c
Q 017536          153 KVVTISPT-DTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQNLP----------------------A  206 (369)
Q Consensus       153 ~~~~v~~~-~~l~~~~~~m~~~~~~~~~V~d---~~~~~Giit~~dll~~~~~~~~~----------------------~  206 (369)
                      ....++.+ .++.+....|.++.++.+||+-   .++++|++.++|+...+......                      .
T Consensus       557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~~~~~  636 (696)
T KOG0475|consen  557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAVAGIP  636 (696)
T ss_pred             hheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccccCCCCccccCCCC
Confidence            35555554 8999999999999999999874   67899999999997554422100                      0


Q ss_pred             cccccccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHH
Q 017536          207 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (369)
Q Consensus       207 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~  264 (369)
                      .....+++|...|.++...++..-+++++++-+.+...|. ++|++.|+||.+|+++.
T Consensus       637 ~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~-~~G~l~Giitkkd~l~~  693 (696)
T KOG0475|consen  637 SRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVT-KNGILLGIITKKDCLRH  693 (696)
T ss_pred             CCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEc-cCCeeEeeeehHHHHHh
Confidence            1234678888899999999999999999999999887665 68999999999999974

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=97.74  E-value=0.00053  Score=64.29  Aligned_cols=83  Identities=22%  Similarity=0.187  Sum_probs=64.3

Q ss_pred             cCCceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcE
Q 017536          173 LRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDV  252 (369)
Q Consensus       173 ~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~  252 (369)
                      .+.+++.|++.    |+++..+.. .+.....   ...+.+ +.....++++++++.+++..+.+.+.. ++|+|+ |++
T Consensus       298 ~~~~~~~~~~~----~~~~~~~~~-~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~  366 (382)
T TIGR03415       298 RRDTWLFTIDK----QVRRRDAKL-PVQAWAA---EQEVES-LEAAPTVINPDTLMRDVLAARHRTGGA-ILLVEN-GRI  366 (382)
T ss_pred             cccceeEeecc----ceecccchH-hHhhccc---ccchhh-hcccCcccCCCCcHHHHHHHHhcCCCC-eEEeeC-CeE
Confidence            77888888876    788877764 4333111   234555 556788999999999999999988765 788886 999


Q ss_pred             EEEEeHHHHHHHHH
Q 017536          253 VDVVDVIHITHAAV  266 (369)
Q Consensus       253 ~Givt~~di~~~~~  266 (369)
                      +|+|+..++++++.
T Consensus       367 ~g~~~~~~~~~~~~  380 (382)
T TIGR03415       367 VGVIGDDNIYHALL  380 (382)
T ss_pred             EEEEeHHHHHHHHh
Confidence            99999999998765

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.65  E-value=0.00021  Score=68.47  Aligned_cols=130  Identities=15%  Similarity=0.144  Sum_probs=89.6

Q ss_pred             CeEEeC-CCcHHHHHHHHHhCCCeEeeEe-e--CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCC
Q 017536           51 PTFVLS-DTLAVEALQKMVQGKFRHLPVV-E--NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSIS  126 (369)
Q Consensus        51 ~i~v~~-~~~l~~a~~~m~~~~~~~lpVv-d--~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  126 (369)
                      +..+.. ++++.+...+|.+..++.+||+ +  ..+++|+++.+++...+........           ....+.- .+.
T Consensus       558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~-----------~~~~~~~-~f~  625 (696)
T KOG0475|consen  558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQS-----------FIVTTSI-YFN  625 (696)
T ss_pred             heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccc-----------cceeccc-ccC
Confidence            455544 4899999999999999999998 3  4789999999998876542211110           0000000 000


Q ss_pred             ChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHH
Q 017536          127 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (369)
Q Consensus       127 ~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll  196 (369)
                      .+..  ......-.....+++|.  ..+.++...++.+-+++++++-+.+.+.|..+|++.|+||.+|++
T Consensus       626 ~~~~--~~~~~~~~~~~lk~il~--~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~~G~l~Giitkkd~l  691 (696)
T KOG0475|consen  626 DPSP--SAVAGIPSRLDLKDILD--MTPFTVTDLTPMETVVDLFRKLGLRQILVTKNGILLGIITKKDCL  691 (696)
T ss_pred             CCCc--cccCCCCCCcCceeecc--CCcccccccCcHHHHHHHHHhhCceEEEEccCCeeEeeeehHHHH
Confidence            0000  00001112334677787  568899999999999999999999999998899999999999998

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.61  E-value=0.00021  Score=44.84  Aligned_cols=46  Identities=26%  Similarity=0.395  Sum_probs=40.7

Q ss_pred             CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHH
Q 017536           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYD   95 (369)
Q Consensus        50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~   95 (369)
                      ++.++.+++++.++++.|.+++++.+||++ +++++|+++..+++..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~   47 (49)
T smart00116        1 DVVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKA   47 (49)
T ss_pred             CceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHh
Confidence            356789999999999999999999999998 5899999999988653

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=97.30  E-value=0.0041  Score=58.39  Aligned_cols=139  Identities=9%  Similarity=0.037  Sum_probs=85.8

Q ss_pred             cCEEEEEcCCCcEEEEEeHHHHHH-------HHHhccCC-CcccccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeE
Q 017536            6 VDALLLTDSNALLCGILTDKDIAT-------RVIARELN-LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPV   77 (369)
Q Consensus         6 ~~~~~V~d~~~~~~Givt~~Di~~-------~~~~~~~~-~~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpV   77 (369)
                      .+.+.+.+ +|+++-.-+..+++.       +.+....+ ..-.++.++|.+.......+.+  .|++   +++...+.|
T Consensus       232 ~DrI~vl~-~G~iv~~g~~~ei~~~p~~~~~~~~~~~~~~~~~l~a~~~m~~~~~~~~~~~~--~~~~---~~~~~~~~~  305 (382)
T TIGR03415       232 GNRIAIME-GGRIIQHGTPEEIVLNPANDYVADFVAHTNPLNVLTARSLMRPLTDLEHVDGG--WCVS---DRRDTWLFT  305 (382)
T ss_pred             CCEEEEEE-CCEEEEecCHHHHhhCcchHHHHHHhcccCcccceeHHHHhcccccccccCcc--hhhh---hcccceeEe
Confidence            45666665 677777767777642       11112222 2234778899433333333323  4433   378888999


Q ss_pred             eeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEe
Q 017536           78 VENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTI  157 (369)
Q Consensus        78 vd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v  157 (369)
                      +|+    |+++..+.... ...                                       ....++.+ +.  ....++
T Consensus       306 ~~~----~~~~~~~~~~~-~~~---------------------------------------~~~~~~~~-~~--~~~~~~  338 (382)
T TIGR03415       306 IDK----QVRRRDAKLPV-QAW---------------------------------------AAEQEVES-LE--AAPTVI  338 (382)
T ss_pred             ecc----ceecccchHhH-hhc---------------------------------------ccccchhh-hc--ccCccc
Confidence            987    67765553321 000                                       00111223 22  457889


Q ss_pred             CCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHH
Q 017536          158 SPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMR  198 (369)
Q Consensus       158 ~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~  198 (369)
                      ++++++.+++..+.+.++. ++|+++|+++|+|+..+++..
T Consensus       339 ~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~g~~~~~~~~~~  378 (382)
T TIGR03415       339 NPDTLMRDVLAARHRTGGA-ILLVENGRIVGVIGDDNIYHA  378 (382)
T ss_pred             CCCCcHHHHHHHHhcCCCC-eEEeeCCeEEEEEeHHHHHHH
Confidence            9999999999998887765 777788999999999999833

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]

Probab=97.26  E-value=0.00042  Score=67.02  Aligned_cols=134  Identities=14%  Similarity=0.181  Sum_probs=102.6

Q ss_pred             hCCCCccccccCCCceeEeCCCCcHH-HHHHHHHHcCCceEEEEe---CCEEEEEeehHHHHHHHHhcCCCccccccccc
Q 017536          139 MFRPSLSTIIPEKSKVVTISPTDTVL-MATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQNLPADSTLVEKV  214 (369)
Q Consensus       139 ~~~~~v~~im~~~~~~~~v~~~~~l~-~~~~~m~~~~~~~~~V~d---~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~  214 (369)
                      +....++++|+|..++..++.+..+. +......+.+++++||.+   ...+.|.+....+  ++..........++...
T Consensus       201 l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~--~~~~~~~~~~~~~v~~~  278 (498)
T KOG2118|consen  201 LTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLL--RLLQVEVPLEPLPVSES  278 (498)
T ss_pred             HHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhh--hhhccccccccccchhh
Confidence            44455899999988899999888887 555566689999999998   2334444444444  44433334446788888


Q ss_pred             cccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHhcCCCCCc
Q 017536          215 MTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSN  276 (369)
Q Consensus       215 m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~~~~~~~~  276 (369)
                      +......+++++++.+.++.|++.+.|.+.|.. ...-.|+++..|+ ++.+.++.++.+..
T Consensus       279 ~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~-~~~~~~~~~l~~~-~~~~~ev~de~d~~  338 (498)
T KOG2118|consen  279 ALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN-GHVDIFVLTLEDL-EEVVKEVEDEEDKE  338 (498)
T ss_pred             hccccccCCCcccHHHHHHHHhhhhceeEEEec-CCcceeeEeccch-hhhcceeccccccc
Confidence            888999999999999999999999998887776 6678999999999 77777777665533

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.23  E-value=0.0029  Score=62.13  Aligned_cols=60  Identities=15%  Similarity=0.161  Sum_probs=51.4

Q ss_pred             ccccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeC---CeEEEEEehHHHHHHHHHH
Q 017536           40 ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN---GEVIALLDIAKCLYDAIAR   99 (369)
Q Consensus        40 ~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~~~vGiv~~~dil~~~~~~   99 (369)
                      .+.|.++|.+++.++..++|..|.-+.+..+.++.+|++|+   -.++|.|.++.+...+-.+
T Consensus       587 ~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~  649 (931)
T KOG0476|consen  587 TVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRH  649 (931)
T ss_pred             EEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhh
Confidence            56799999999999999999999999888877999999983   4699999988887665543

>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters

Probab=96.88  E-value=0.00059  Score=48.97  Aligned_cols=54  Identities=9%  Similarity=0.129  Sum_probs=38.6

Q ss_pred             HHhhcCCCCCCCCccccccccccccCCCCccc--cccCCCCCCCCCCceeEEEEcCC-CceEEee
Q 017536          289 DSAMALSPNDDEEDNRSEGSLKFASEGADTAR--YLSYPSPSPGVPSAFAFKVQDNK-GLMHRFT  350 (369)
Q Consensus       289 ~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~v~~~~-g~~~~~~  350 (369)
                      ++.+.+..++++++|++|++...++++|..|+  .+.++++.        |+|.+++ +++.+.+
T Consensus        20 ~~~~~~~l~~~~~~Tl~G~i~~~l~~iP~~Ge~~~i~~~~~~--------~~V~~~~~~rI~~V~   76 (81)
T PF03471_consen   20 NELLGLDLPEEDYDTLGGLILEQLGRIPEVGERVEIELENYE--------FEVLEMDGRRIRKVR   76 (81)
T ss_dssp             HHHHTS-TTTTTTSBHHHHHHHHHTSS--TTSEEEEEETTEE--------EEEEEEETTEEEEEE
T ss_pred             HHHHCcCCCccchhhHHHHHHHHcCCCCCCCeEEEEEcCCEE--------EEEEEeeCCEEEEEE
Confidence            34444555666789999999999999999999  55555888        9999996 4554443

This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=96.25  E-value=0.033  Score=48.46  Aligned_cols=97  Identities=20%  Similarity=0.076  Sum_probs=65.6

Q ss_pred             cHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHH--------HHHHhcCCC----ccccccccccccCC----ceecCC
Q 017536          162 TVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL--------MRVISQNLP----ADSTLVEKVMTPNP----ECATID  225 (369)
Q Consensus       162 ~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll--------~~~~~~~~~----~~~~~v~~~m~~~~----~~v~~~  225 (369)
                      .+.||+++-     +++.|.++|+++-+=+..+++        ..++.....    .....+.+.|....    -.+...
T Consensus       195 DidEA~kLa-----dri~vm~~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  269 (309)
T COG1125         195 DIDEALKLA-----DRIAVMDAGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGEPADGEPLLEG  269 (309)
T ss_pred             CHHHHHhhh-----ceEEEecCCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhcccccccCCccccc
Confidence            355666542     467888888999888877766        333333211    11233444443322    233445


Q ss_pred             CCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          226 TPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       226 ~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      ....+++..+...+...+||+|++|+++|.||..+++.
T Consensus       270 ~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~  307 (309)
T COG1125         270 FVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLD  307 (309)
T ss_pred             hhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhh
Confidence            56667888899999999999999999999999999986

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=95.52  E-value=0.016  Score=41.57  Aligned_cols=32  Identities=31%  Similarity=0.502  Sum_probs=28.4

Q ss_pred             eeEEEEcCCCceEEeecC-CCChHHHHHhhccc
Q 017536          335 FAFKVQDNKGLMHRFTCG-MLPFPNFIEVTNYE  366 (369)
Q Consensus       335 ~~~~v~~~~g~~~~~~~g-~~~~~~~~~~~~~~  366 (369)
                      |+||..+..|++|||+++ .-|+.+++..|.++
T Consensus         1 f~FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~R   33 (86)
T cd06409           1 FAFKFKDPKGRVHRFRLRPSESLEELRTLISQR   33 (86)
T ss_pred             CcEEeeCCCCCEEEEEecCCCCHHHHHHHHHHH
Confidence            469999999999999998 99999999887653

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=95.48  E-value=0.084  Score=47.43  Aligned_cols=135  Identities=11%  Similarity=0.148  Sum_probs=93.3

Q ss_pred             EEEEcCCCcEEEEEeHHHHHH--------HHHhccCCCc-cccccccccc--CCeEEeCCCcHHHHHHHHHhCCCeEeeE
Q 017536            9 LLLTDSNALLCGILTDKDIAT--------RVIARELNLE-ETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPV   77 (369)
Q Consensus         9 ~~V~d~~~~~~Givt~~Di~~--------~~~~~~~~~~-~~~v~dim~~--~~i~v~~~~~l~~a~~~m~~~~~~~lpV   77 (369)
                      +.+. ++|+++-+=|..+|+.        ..+ .+.+.. -.++.++|..  ..+.-.+...-..++..+.+.....+.+
T Consensus       235 Iaim-kdG~ivQ~Gtp~eIl~~PAndYV~~Fv-~~v~~~~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~  312 (386)
T COG4175         235 IAIM-KDGEIVQVGTPEEILLNPANDYVRDFV-RNVDRSRVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYA  312 (386)
T ss_pred             EEEe-cCCeEEEeCCHHHHHcCccHHHHHHHH-hcCChhheeeHHHhhcccccccccccccccchhhhhhhhccchhhHH
Confidence            3344 4788998889888873        112 222322 3478888873  2222233444567888888887777777


Q ss_pred             ee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeE
Q 017536           78 VE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVT  156 (369)
Q Consensus        78 vd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~  156 (369)
                      ++ +++.+|+++..+....                                                   .+.  +.+.+
T Consensus       313 ~~~~~~~~g~v~~~~~~~~---------------------------------------------------~~~--~~~~~  339 (386)
T COG4175         313 VDRGNKFVGVVSIDSLVKA---------------------------------------------------ALI--DDVLT  339 (386)
T ss_pred             HhccCceeeEEeccchhcc---------------------------------------------------ccc--ccccc
Confidence            76 6779999987765431                                                   111  46788


Q ss_pred             eCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHH
Q 017536          157 ISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVI  200 (369)
Q Consensus       157 v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~  200 (369)
                      +++++++.+.+..+.+.+. .++|+| +++++|+++...++ .++
T Consensus       340 v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl-~aL  382 (386)
T COG4175         340 VDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELL-EAL  382 (386)
T ss_pred             cCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHH-HHH
Confidence            9999999999988887665 467777 99999999999998 444

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=91.24  E-value=1.2  Score=38.99  Aligned_cols=87  Identities=20%  Similarity=0.236  Sum_probs=58.1

Q ss_pred             CEEEEEcCCCcEEEEEeHHHHH--------HHHHhcc----CCCcccccccccccCCe----EEeCCCcHHHHHHHHHhC
Q 017536            7 DALLLTDSNALLCGILTDKDIA--------TRVIARE----LNLEETPVSKVMTRNPT----FVLSDTLAVEALQKMVQG   70 (369)
Q Consensus         7 ~~~~V~d~~~~~~Givt~~Di~--------~~~~~~~----~~~~~~~v~dim~~~~i----~v~~~~~l~~a~~~m~~~   70 (369)
                      +.+.|.+ +|+++-.=|..+|+        +..+...    ..++..++.+.|.....    .+.....-.+++..+...
T Consensus       204 dri~vm~-~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~  282 (309)
T COG1125         204 DRIAVMD-AGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLAR  282 (309)
T ss_pred             ceEEEec-CCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhcccccccCCccccchhhHHHHHHHHhc
Confidence            4567776 78888888865554        3333322    12334456666654321    223344556788888888


Q ss_pred             CCeEeeEee-CCeEEEEEehHHHHH
Q 017536           71 KFRHLPVVE-NGEVIALLDIAKCLY   94 (369)
Q Consensus        71 ~~~~lpVvd-~~~~vGiv~~~dil~   94 (369)
                      +...+||+| +|+++|.++..+++.
T Consensus       283 ~~~~~~Vvd~~g~~~G~vt~~~l~~  307 (309)
T COG1125         283 GRSVLPVVDEDGRPLGTVTRADLLD  307 (309)
T ss_pred             CCceeEEECCCCcEeeEEEHHHHhh
Confidence            999999999 799999999998864

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=88.57  E-value=0.72  Score=46.13  Aligned_cols=66  Identities=17%  Similarity=0.202  Sum_probs=57.1

Q ss_pred             ccccccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCC--CcEEEEEeHHHHHHHHHHHhcCCC
Q 017536          208 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRD--GDVVDVVDVIHITHAAVATVGNTA  273 (369)
Q Consensus       208 ~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~--g~~~Givt~~di~~~~~~~~~~~~  273 (369)
                      ...|+++|.+++.++..+++..|..+.+....++.+|+||..  --++|.|.+..+...+-.++..+.
T Consensus       587 ~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~ig~~~  654 (931)
T KOG0476|consen  587 TVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRHIGPEP  654 (931)
T ss_pred             EEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhhcCccH
Confidence            467899999999999999999999999988889999999864  359999999999988777776543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	369
4fry_A	157	The Structure Of A Putative Signal-Transduction Pro		1e-08
3fhm_A	165	Crystal Structure Of The Cbs-Domain Containing Prot		2e-08
2rc3_A	135	Crystal Structure Of Cbs Domain, Ne2398 Length = 13		2e-08
2yzi_A	138	Crystal Structure Of Uncharacterized Conserved Prot		9e-04

>pdb|4FRY|A Chain A, The Structure Of A Putative Signal-Transduction Protein With Cbs Domains From Burkholderia Ambifaria Mc40-6 Length = 157

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MA + + ALL+ D + +  GI+T++D A +V+ +E + + T V ++MT    +V      
Sbjct: 39  MAEKGIGALLVVDGDDI-AGIVTERDYARKVVLQERSSKATRVEEIMTAKVRYVEPSQST 97
Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIA 98
            E +  M + + RHLPV++ G++I L+ I   +   IA
Sbjct: 98  DECMALMTEHRMRHLPVLDGGKLIGLISIGDLVKSVIA 135

>pdb|3FHM|A Chain A, Crystal Structure Of The Cbs-Domain Containing Protein Atu1752 From Agrobacterium Tumefaciens Length = 165

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 54/99 (54%)
Query: 3   ARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVE 62
           A ++ A+++TD++ ++ GI T++D+   V  +     +  VS  MT+N      ++   +
Sbjct: 55  AHKIGAVVVTDADGVVLGIFTERDLVKAVAGQGAASLQQSVSVAMTKNVVRCQHNSTTDQ 114
Query: 63  ALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARME 101
            ++ M  G+FRH+PV ENG +  ++ I   +   I  +E
Sbjct: 115 LMEIMTGGRFRHVPVEENGRLAGIISIGDVVKARIGEIE 153

>pdb|2RC3|A Chain A, Crystal Structure Of Cbs Domain, Ne2398 Length = 135

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAA  + ALL+     L+ GILT++D + +    +  +++T V ++MTR   +V  +   
Sbjct: 35  MAADNIGALLVMKDEKLV-GILTERDFSRKSYLLDKPVKDTQVKEIMTRQVAYVDLNNTN 93
Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARME 101
            + +  + + + RHLPV+++G+VI LL I   + DAI++ +
Sbjct: 94  EDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKDAISQHQ 134

>pdb|2YZI|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein From Pyrococcus Horikoshii Length = 138

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 6   VDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQ 65
           V +L++ + +  + G  T  DI  RVI   L  +  PV ++ TRN      +T   E L+
Sbjct: 38  VGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYD-IPVERIXTRNLITANVNTPLGEVLR 96
Query: 66  KMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARME 101
           K  + + +H+ + E G+++ +  ++  L  +  R+E
Sbjct: 97  KXAEHRIKHILIEEEGKIVGIFTLSDLLEASRRRLE 132

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	369
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	4e-36
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	9e-29
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	1e-05
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	4e-31
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	3e-27
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	9e-11
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	9e-05
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	2e-29
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	1e-28
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	1e-08
3ddj_A	296	CBS domain-containing protein; structural genomics	5e-29
3ddj_A	296	CBS domain-containing protein; structural genomics	6e-27
3ddj_A	296	CBS domain-containing protein; structural genomics	1e-10
3ddj_A	296	CBS domain-containing protein; structural genomics	1e-07
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	4e-28
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	2e-25
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	3e-19
4fry_A	157	Putative signal-transduction protein with CBS DOM;	6e-28
4fry_A	157	Putative signal-transduction protein with CBS DOM;	2e-27
4fry_A	157	Putative signal-transduction protein with CBS DOM;	7e-10
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	8e-26
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	4e-18
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	6e-12
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	8e-05
1pvm_A	184	Conserved hypothetical protein TA0289; structural	2e-25
1pvm_A	184	Conserved hypothetical protein TA0289; structural	8e-20
1pvm_A	184	Conserved hypothetical protein TA0289; structural	2e-08
1pvm_A	184	Conserved hypothetical protein TA0289; structural	2e-06
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	9e-25
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	1e-22
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	8e-10
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	4e-06
1pbj_A	125	Hypothetical protein; structural genomics, domain,	3e-23
1pbj_A	125	Hypothetical protein; structural genomics, domain,	3e-18
1pbj_A	125	Hypothetical protein; structural genomics, domain,	1e-11
1pbj_A	125	Hypothetical protein; structural genomics, domain,	1e-04
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	1e-21
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	9e-17
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	1e-07
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	7e-04
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	1e-21
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	2e-09
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	2e-04
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	4e-21
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	3e-17
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	4e-07
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	6e-21
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	3e-10
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	1e-04
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	8e-21
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	8e-15
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	2e-13
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	8e-10
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	1e-20
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	8e-10
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	3e-05
3fio_A	70	A cystathionine beta-synthase domain protein fused	1e-20
3fio_A	70	A cystathionine beta-synthase domain protein fused	9e-14
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	4e-20
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	1e-12
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	6e-10
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	2e-07
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	6e-20
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	2e-09
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	4e-05
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	1e-04
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	2e-18
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	8e-17
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	3e-16
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	3e-15
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	3e-18
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	7e-13
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	8e-10
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	2e-08
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	3e-17
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	6e-10
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	4e-09
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	5e-07
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	4e-17
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	1e-13
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	4e-10
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	1e-07
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	5e-17
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	5e-10
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	3e-09
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	7e-17
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	9e-11
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	8e-09
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	2e-07
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	4e-16
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	1e-09
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	2e-07
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	6e-06
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	5e-16
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	1e-12
1vr9_A	213	CBS domain protein/ACT domain protein; structural	6e-16
1vr9_A	213	CBS domain protein/ACT domain protein; structural	1e-09
1vr9_A	213	CBS domain protein/ACT domain protein; structural	5e-08
1vr9_A	213	CBS domain protein/ACT domain protein; structural	5e-07
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	3e-15
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	3e-10
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	4e-15
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	7e-07
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	3e-06
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	1e-12
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	1e-11
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	9e-09
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	4e-08
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	6e-05
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	2e-12
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	4e-06
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	4e-06
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	4e-11
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	1e-06
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	4e-09
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	9e-09
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	3e-08
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	7e-08
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	2e-07
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	8e-07
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	1e-06
2oux_A	286	Magnesium transporter; 10001B, structural genomics	1e-06
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	1e-06
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	2e-06
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	2e-06
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	3e-06
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	6e-06
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	4e-04

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score =  128 bits (323), Expect = 4e-36
 Identities = 32/113 (28%), Positives = 60/113 (53%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           + A ++ A+++TD++ ++ GI T++D+   V  +     +  VS  MT+N      ++  
Sbjct: 53  LHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQGAASLQQSVSVAMTKNVVRCQHNSTT 112

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAA 113
            + ++ M  G+FRH+PV ENG +  ++ I   +   I  +E  AE  KA  A 
Sbjct: 113 DQLMEIMTGGRFRHVPVEENGRLAGIISIGDVVKARIGEIEAEAEHIKAYIAG 165

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score =  108 bits (273), Expect = 9e-29
 Identities = 31/148 (20%), Positives = 64/148 (43%), Gaps = 7/148 (4%)

Query: 126 SGPNTFIETLRERMFRPSLSTIIPE-----KSKVVTISPTDTVLMATKKMLELRLSSAVV 180
           S  +    + RE ++   ++T + +        VVT+ P  ++  A   +   ++ + VV
Sbjct: 4   SHHHHHHSSGRENLYFQGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVV 63

Query: 181 T-VENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGK 239
           T  +    GI T +D++  V  Q   +    V   MT N      ++     + IM  G+
Sbjct: 64  TDADGVVLGIFTERDLVKAVAGQGAASLQQSVSVAMTKNVVRCQHNSTTDQLMEIMTGGR 123

Query: 240 FLHLPVVDRDGDVVDVVDVIHITHAAVA 267
           F H+PV + +G +  ++ +  +  A + 
Sbjct: 124 FRHVPVEE-NGRLAGIISIGDVVKARIG 150

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 24/172 (13%), Positives = 46/172 (26%), Gaps = 45/172 (26%)

Query: 43  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALL---DIAKCLYDAIA 98
           +     R+   V  D    EA   +   K   + V + +G V+ +    D+ K +     
Sbjct: 29  LLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAV----- 83

Query: 99  RMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTIS 158
               A +   ++  +V                        M              VV   
Sbjct: 84  ----AGQGAASLQQSVSVA---------------------M-----------TKNVVRCQ 107

Query: 159 PTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTL 210
              T     + M   R     V    +  GI++  D++   I +       +
Sbjct: 108 HNSTTDQLMEIMTGGRFRHVPVEENGRLAGIISIGDVVKARIGEIEAEAEHI 159

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score =  114 bits (287), Expect = 4e-31
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 1/105 (0%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M    V +L++ + +  + G  T  DI  RVI   L  +  PV ++MTRN      +T  
Sbjct: 33  MMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYD-IPVERIMTRNLITANVNTPL 91

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAE 105
            E L+KM + + +H+ + E G+++ +  ++  L  +  R+E A  
Sbjct: 92  GEVLRKMAEHRIKHILIEEEGKIVGIFTLSDLLEASRRRLETAIS 136

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score =  103 bits (259), Expect = 3e-27
 Identities = 33/125 (26%), Positives = 64/125 (51%), Gaps = 3/125 (2%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVISQNLPADSTL 210
            K++ + P+ +V  A++ M+E  + S VV  ++    G  T  DI+ RVI   LP D   
Sbjct: 15  KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYD-IP 73

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVG 270
           VE++MT N   A ++TP+ + L  M + +  H+ + + +G +V +  +  +  A+   + 
Sbjct: 74  VERIMTRNLITANVNTPLGEVLRKMAEHRIKHILIEE-EGKIVGIFTLSDLLEASRRRLE 132

Query: 271 NTAGS 275
               +
Sbjct: 133 TAISA 137

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 58.4 bits (142), Expect = 9e-11
 Identities = 33/173 (19%), Positives = 58/173 (33%), Gaps = 47/173 (27%)

Query: 34  RELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DI 89
           R ++++  P+   MT+    V   T   EA + M++     L V+ ++G V+      DI
Sbjct: 1   RVMDMK-APIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDI 59

Query: 90  AKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIP 149
            +          R    G      VE +                     M R        
Sbjct: 60  IR----------RVIVPGLPYDIPVERI---------------------MTRN------- 81

Query: 150 EKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQ 202
               ++T +    +    +KM E R+   ++  E K  GI T  D+L     +
Sbjct: 82  ----LITANVNTPLGEVLRKMAEHRIKHILIEEEGKIVGIFTLSDLLEASRRR 130

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 41.1 bits (97), Expect = 9e-05
 Identities = 11/46 (23%), Positives = 20/46 (43%)

Query: 208 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 253
              ++  MT         T + +A  +M +     L V++ DG+VV
Sbjct: 6   KAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVV 51

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score =  109 bits (275), Expect = 2e-29
 Identities = 32/101 (31%), Positives = 60/101 (59%), Gaps = 1/101 (0%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAA  + ALL+     L+ GILT++D + +    +  +++T V ++MTR   +V  +   
Sbjct: 35  MAADNIGALLVMKDEKLV-GILTERDFSRKSYLLDKPVKDTQVKEIMTRQVAYVDLNNTN 93

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARME 101
            + +  + + + RHLPV+++G+VI LL I   + DAI++ +
Sbjct: 94  EDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKDAISQHQ 134

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score =  107 bits (269), Expect = 1e-28
 Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 1/114 (0%)

Query: 154 VVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEK 213
           VV I P D+V  A +KM    + + +V  + K  GILT +D   +    + P   T V++
Sbjct: 19  VVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLLDKPVKDTQVKE 78

Query: 214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA 267
           +MT       ++    D + ++ + +  HLPV+D DG V+ ++ +  +   A++
Sbjct: 79  IMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAIS 131

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score = 52.2 bits (126), Expect = 1e-08
 Identities = 27/169 (15%), Positives = 57/169 (33%), Gaps = 47/169 (27%)

Query: 41  TPVSKVMTRNPTFVLS---DTLAVEALQKMVQGKFRHLPVVENGEVIALL---DIAKCLY 94
             V  ++      V++   D     A+QKM       L V+++ +++ +L   D ++   
Sbjct: 6   KTVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSR--- 62

Query: 95  DAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKV 154
                  ++    K +                        ++E M R            V
Sbjct: 63  -------KSYLLDKPVKDT--------------------QVKEIMTRQ-----------V 84

Query: 155 VTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQN 203
             +   +T       + E+R+    V  + K  G+L+  D++   ISQ+
Sbjct: 85  AYVDLNNTNEDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKDAISQH 133

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score =  113 bits (284), Expect = 5e-29
 Identities = 47/283 (16%), Positives = 93/283 (32%), Gaps = 65/283 (22%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARE---------LNLEETPVSKVMTRNP 51
           +    +  +++ +    + G+LT +D+ + V +            ++  TP+   MT NP
Sbjct: 46  INEGGIGRIIVANEK--IEGLLTTRDLLSTVESYCKDSCSQGDLYHISTTPIIDYMTPNP 103

Query: 52  TFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIARMERAAEKG 107
             V + +    A+  MV   F  LPVV  N + + ++   +      D            
Sbjct: 104 VTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKDLDEIF------- 156

Query: 108 KAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMAT 167
                                      ++  M            +KV TI     +  A 
Sbjct: 157 --------------------------PVKVFM-----------STKVQTIYKEVRLDQAV 179

Query: 168 KKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPAD-----STLVEKVMTPNPEC 221
           K ML        V+  +NK  GI+T  + + ++       D       +V+ VM  N   
Sbjct: 180 KLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDVMVTNLVT 239

Query: 222 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264
                 +  A   M   +   L ++++D  +  ++    +  A
Sbjct: 240 IDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIA 282

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score =  107 bits (269), Expect = 6e-27
 Identities = 42/265 (15%), Positives = 78/265 (29%), Gaps = 41/265 (15%)

Query: 25  KDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEV- 83
             I        L  +   +  +M +NP  +  +     A +K+ +G    + V       
Sbjct: 4   DKIHHHHHHENLYFQGMNIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVANEKIEG 63

Query: 84  -IALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRP 142
            +   D+   +           +        +                        M   
Sbjct: 64  LLTTRDLLSTVESYCKDSCSQGDLYHISTTPIIDY---------------------MTPN 102

Query: 143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVIS 201
                       VT+  T     A   M+     S  VV + +KP GI+T ++ L+    
Sbjct: 103 -----------PVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKD 151

Query: 202 QNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DV 258
            +   +   V+  M+   +    +  +  A+ +M    F  LPV+D D  VV +V   + 
Sbjct: 152 LD---EIFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNA 208

Query: 259 IHITHAAVATVGNTAGSNNEAASTM 283
           I     AV  +             M
Sbjct: 209 IKQLAKAVDKLDPDYFYGKVVKDVM 233

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 60.9 bits (148), Expect = 1e-10
 Identities = 17/105 (16%), Positives = 40/105 (38%), Gaps = 11/105 (10%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELN------LEETPVSKVMTRNPTFV 54
           M  R    L + D +  + GI+T  +   + +A+ ++           V  VM  N   +
Sbjct: 182 MLRRGFRRLPVIDDDNKVVGIVTVVNAI-KQLAKAVDKLDPDYFYGKVVKDVMVTNLVTI 240

Query: 55  LSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYD 95
                   A  +M+  +   L ++ ++  +  ++   D+   L+ 
Sbjct: 241 DELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHH 285

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 51.7 bits (124), Expect = 1e-07
 Identities = 16/119 (13%), Positives = 38/119 (31%), Gaps = 11/119 (9%)

Query: 190 LTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRD 249
           + S  I      +NL      +E +M  NP   + +  +  A   +++G    + V   +
Sbjct: 1   MGSDKIHHHHHHENLYFQGMNIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVA--N 58

Query: 250 GDVV------DVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDEED 302
             +       D++  +        + G+    +       M     + + +    DE  
Sbjct: 59  EKIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTTPIIDYMTP---NPVTVYNTSDEFT 114

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score =  110 bits (276), Expect = 4e-28
 Identities = 46/284 (16%), Positives = 91/284 (32%), Gaps = 71/284 (25%)

Query: 1   MAARRVDALLLTDS-NALLCGILTDKDIATRVIARE-------------LNLEETPVSKV 46
           M   +   L + ++ N  + GI+T  DI   +                 L     PV ++
Sbjct: 30  MNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLIREKHERNFLAAINEPVREI 89

Query: 47  MTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIARMER 102
           M  N   +  +    EA++  +       P+V +  ++I+L+   D+ + L D I   E 
Sbjct: 90  MEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDKIDENEV 149

Query: 103 AAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDT 162
                                           + + + R            V+  +P + 
Sbjct: 150 --------------------------------IDDYITRD-----------VIVATPGER 166

Query: 163 VLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQ----------NLPADSTLVE 212
           +    + M+        V  E +  GI+TS D +  + S                +  +E
Sbjct: 167 LKDVARTMVRNGFRRLPVVSEGRLVGIITSTDFIKLLGSDWAFNHMQTGNVREITNVRME 226

Query: 213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
           ++M  +   A     +     IM       LPVVD +  +  ++
Sbjct: 227 EIMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGII 270

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score =  102 bits (257), Expect = 2e-25
 Identities = 49/255 (19%), Positives = 94/255 (36%), Gaps = 40/255 (15%)

Query: 42  PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE--NGEVIALL---DIAKCLYDA 96
            +     +    V   T   +AL  M + K+R LPVV   N +V+ ++   DI   +   
Sbjct: 5   VMKIAQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGG 64

Query: 97  IARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVT 156
                   +  +   AA+                  E +RE M              V+T
Sbjct: 65  SKYNLIREKHERNFLAAIN-----------------EPVREIMEEN-----------VIT 96

Query: 157 ISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVM 215
           +     +  A +  L   +  A +V  EN+   ++T +D++  ++ +    +   ++  +
Sbjct: 97  LKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDKIDENEV--IDDYI 154

Query: 216 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIHITHAAVATVGNT 272
           T +   AT    + D    M    F  LPVV  +G +V ++   D I +  +  A     
Sbjct: 155 TRDVIVATPGERLKDVARTMVRNGFRRLPVVS-EGRLVGIITSTDFIKLLGSDWAFNHMQ 213

Query: 273 AGSNNEAASTMMQKF 287
            G+  E  +  M++ 
Sbjct: 214 TGNVREITNVRMEEI 228

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 85.6 bits (212), Expect = 3e-19
 Identities = 37/205 (18%), Positives = 72/205 (35%), Gaps = 38/205 (18%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
              + V    + +    L  ++T++D+   ++  +   E   +   +TR+          
Sbjct: 110 FLTKNVGGAPIVNDENQLISLITERDVIRALL--DKIDENEVIDDYITRDVIVATPGERL 167

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALL---DIAKCLYDAIARMERAAEKGKAIAAAVEGV 117
            +  + MV+  FR LPVV  G ++ ++   D  K L    A         + I       
Sbjct: 168 KDVARTMVRNGFRRLPVVSEGRLVGIITSTDFIKLLGSDWAFNHMQTGNVREITNV---- 223

Query: 118 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSS 177
                            + E M R            V+T    D +    + M+   + +
Sbjct: 224 ----------------RMEEIMKRD-----------VITAKEGDKLKKIAEIMVTNDIGA 256

Query: 178 AVVTVEN-KPRGILTSKDILMRVIS 201
             V  EN + +GI+T KD+L +  +
Sbjct: 257 LPVVDENLRIKGIITEKDVL-KYFA 280

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score =  106 bits (266), Expect = 6e-28
 Identities = 31/109 (28%), Positives = 59/109 (54%), Gaps = 1/109 (0%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MA + + ALL+ D + +  GI+T++D A +V+ +E + + T V ++MT    +V      
Sbjct: 39  MAEKGIGALLVVDGDDI-AGIVTERDYARKVVLQERSSKATRVEEIMTAKVRYVEPSQST 97

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKA 109
            E +  M + + RHLPV++ G++I L+ I   +   IA  +    + + 
Sbjct: 98  DECMALMTEHRMRHLPVLDGGKLIGLISIGDLVKSVIADQQFTISQLEH 146

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score =  105 bits (263), Expect = 2e-27
 Identities = 31/141 (21%), Positives = 64/141 (45%), Gaps = 6/141 (4%)

Query: 127 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKP 186
           GP +   T+ + +     S        + T++  D V  A K M E  + + +V   +  
Sbjct: 1   GPGSMSTTVAQILKAKPDSG-----RTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDDI 55

Query: 187 RGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVV 246
            GI+T +D   +V+ Q   + +T VE++MT             + + +M + +  HLPV+
Sbjct: 56  AGIVTERDYARKVVLQERSSKATRVEEIMTAKVRYVEPSQSTDECMALMTEHRMRHLPVL 115

Query: 247 DRDGDVVDVVDVIHITHAAVA 267
           D  G ++ ++ +  +  + +A
Sbjct: 116 D-GGKLIGLISIGDLVKSVIA 135

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score = 56.1 bits (136), Expect = 7e-10
 Identities = 23/185 (12%), Positives = 56/185 (30%), Gaps = 45/185 (24%)

Query: 43  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALL---DIAKCLYDAIAR 99
                 R    V  +    +A++ M +     L VV+  ++  ++   D A+        
Sbjct: 15  AKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDDIAGIVTERDYAR-------- 66

Query: 100 MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISP 159
             +   + ++  A                      + E M              V  + P
Sbjct: 67  --KVVLQERSSKAT--------------------RVEEIMTAK-----------VRYVEP 93

Query: 160 TDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 219
           + +       M E R+    V    K  G+++  D++ + +  +     + +E  +   P
Sbjct: 94  SQSTDECMALMTEHRMRHLPVLDGGKLIGLISIGDLV-KSVIADQQFTISQLEHYIHGTP 152

Query: 220 ECATI 224
              ++
Sbjct: 153 SVTSV 157

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score =   99 bits (250), Expect = 8e-26
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 2/105 (1%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 211
           ++V++++    +    K M E  + S +V   NKP GI+T +DI+ + I +    + T  
Sbjct: 12  TQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIV-KAIGKGKSLE-TKA 69

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
           E+ MT +      D+PI  AL +M      HLPVVD  G++  ++
Sbjct: 70  EEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGII 114

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 78.8 bits (195), Expect = 4e-18
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 7/105 (6%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M  + + ++++ D N  + GI+T++DI  + I +  +LE T   + MT +   +  D+  
Sbjct: 30  MTEKNIGSVIVVDGNKPV-GIITERDIV-KAIGKGKSLE-TKAEEFMTASLITIREDSPI 86

Query: 61  VEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIARME 101
             AL  M Q   RHLPVV + G +  ++   DI + + D    M 
Sbjct: 87  TGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDMFETMG 131

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 61.4 bits (150), Expect = 6e-12
 Identities = 27/170 (15%), Positives = 52/170 (30%), Gaps = 47/170 (27%)

Query: 38  LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALL---DIAKCLY 94
           +EE  V + M      V  D    +  + M +     + VV+  + + ++   DI     
Sbjct: 1   MEEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIV---- 56

Query: 95  DAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKV 154
                  +A  KGK++    E                       M              +
Sbjct: 57  -------KAIGKGKSLETKAEEF---------------------MTAS-----------L 77

Query: 155 VTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQN 203
           +TI     +  A   M +  +    VV  +   +GI++ +DI   +    
Sbjct: 78  ITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDMF 127

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 41.0 bits (97), Expect = 8e-05
 Identities = 17/96 (17%), Positives = 29/96 (30%), Gaps = 17/96 (17%)

Query: 207 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV------DVVDVIH 260
           +  +V++ M       T D  + D   +M +     + VVD     V      D+V  I 
Sbjct: 2   EEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIG 60

Query: 261 ITHAAVATVGN-------TAGSN---NEAASTMMQK 286
              +              T   +     A + M Q 
Sbjct: 61  KGKSLETKAEEFMTASLITIREDSPITGALALMRQF 96

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score =  100 bits (251), Expect = 2e-25
 Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVISQNLPADSTL 210
           S   T++   TV  A K M E  L   VV  +N    G+L+ + I+ R I +N   D   
Sbjct: 17  SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVP 76

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 253
           +  VM         D  + D    + +       VVD  G VV
Sbjct: 77  IRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVV 119

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 85.1 bits (211), Expect = 8e-20
 Identities = 27/130 (20%), Positives = 51/130 (39%), Gaps = 9/130 (6%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M    +  L++ D N    G+L+++ I  R I R    +E P+  VM +    V SD   
Sbjct: 35  MNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPIPKVKSDYDV 94

Query: 61  VEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIARMERAAEKGKAI-----A 111
            +    + +       VV + G V+ ++   D+++ L  A       + + K        
Sbjct: 95  KDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSRASITDILLSHRTKDYQHLCPK 154

Query: 112 AAVEGVEKHW 121
             V  +E  +
Sbjct: 155 CGVGVLEPVY 164

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 34/177 (19%), Positives = 55/177 (31%), Gaps = 47/177 (26%)

Query: 43  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIA 98
           V K+M  N   V  +T   +A++ M +     L V  +NG  + LL    I K     I 
Sbjct: 11  VEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRF---IP 67

Query: 99  RMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTIS 158
           R ++  E                             +R  M           +  +  + 
Sbjct: 68  RNKKPDEV---------------------------PIRLVM-----------RKPIPKVK 89

Query: 159 PTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTLVEKV 214
               V      + E  L    VV    +  GI+T  D+  R +S+    D  L  + 
Sbjct: 90  SDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLS-RYLSRASITDILLSHRT 145

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 15/46 (32%), Positives = 26/46 (56%)

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
           VEK+M  N +    +T + DA+ IM++     L V D +G+ V ++
Sbjct: 11  VEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLL 56

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 96.8 bits (242), Expect = 9e-25
 Identities = 18/106 (16%), Positives = 52/106 (49%), Gaps = 2/106 (1%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVISQNLPADSTL 210
           + V  +   +T+  A + M E  + +  +  ++ +  G+LT +DI+++ ++  L  ++  
Sbjct: 16  AGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTAT 75

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
             ++   +      +  I + L++M + +   +PV+  +  +V +V
Sbjct: 76  AGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVIS-EHRLVGIV 120

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 91.4 bits (228), Expect = 1e-22
 Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 3/98 (3%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M    + AL +   +  L G+LTD+DI  + +A  L+       ++   +  +V ++   
Sbjct: 34  MREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDSIYYVDANASI 93

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALL---DIAKCLYD 95
            E L  M + + R +PV+    ++ ++   DIA+ L +
Sbjct: 94  QEMLNVMEEHQVRRVPVISEHRLVGIVTEADIARHLPE 131

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 55.2 bits (134), Expect = 8e-10
 Identities = 26/170 (15%), Positives = 46/170 (27%), Gaps = 46/170 (27%)

Query: 38  LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCL 93
              T    +M    T V        A Q M +     LP+  ++  +  +L   DI    
Sbjct: 5   FTMTTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVI-- 62

Query: 94  YDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSK 153
                   +    G     A                    T  E                
Sbjct: 63  --------KGLAAGLDPNTA--------------------TAGELARDS----------- 83

Query: 154 VVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQN 203
           +  +    ++      M E ++    V  E++  GI+T  DI  R + ++
Sbjct: 84  IYYVDANASIQEMLNVMEEHQVRRVPVISEHRLVGIVTEADIA-RHLPEH 132

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 44.8 bits (107), Expect = 4e-06
 Identities = 9/52 (17%), Positives = 16/52 (30%)

Query: 205 PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
           P   T    +M     C      +  A   M +     LP+   D  +  ++
Sbjct: 4   PFTMTTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGML 55

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 92.6 bits (231), Expect = 3e-23
 Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 2/105 (1%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 211
           + V TI  T ++    +  +E    S+VV  E    GI+T+ D+L   I++        V
Sbjct: 9   TDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVL-EAIAEGDDLAEVKV 67

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
            +VM  +    +    I +A   M       L V + D +++ V+
Sbjct: 68  WEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEE-DDEIIGVI 111

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 79.1 bits (196), Expect = 3e-18
 Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 5/98 (5%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
                  + ++      + GI+T  D+    IA   +L E  V +VM R+   +      
Sbjct: 27  YVENAKGSSVVVKEGVRV-GIVTTWDVL-EAIAEGDDLAEVKVWEVMERDLVTISPRATI 84

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALL---DIAKCLYD 95
            EA +KMV+     L V E+ E+I ++   DI +    
Sbjct: 85  KEAAEKMVKNVVWRLLVEEDDEIIGVISATDILRAKMA 122

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 60.2 bits (147), Expect = 1e-11
 Identities = 29/163 (17%), Positives = 58/163 (35%), Gaps = 45/163 (27%)

Query: 43  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALL---DIAKCLYDAIAR 99
           V  VM  +   +       + L+  V+       VV+ G  + ++   D+ + +      
Sbjct: 3   VEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAI------ 56

Query: 100 MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISP 159
               AE        V  V                     M R            +VTISP
Sbjct: 57  ----AEGDDLAEVKVWEV---------------------MERD-----------LVTISP 80

Query: 160 TDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQ 202
             T+  A +KM++  +   +V  +++  G++++ DIL   +++
Sbjct: 81  RATIKEAAEKMVKNVVWRLLVEEDDEIIGVISATDILRAKMAK 123

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 1/44 (2%)

Query: 210 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 253
            VE VM  + +   I   + D L    +       VV  +G  V
Sbjct: 2   RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRV 44

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 88.9 bits (221), Expect = 1e-21
 Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 6/109 (5%)

Query: 151 KSKVVTISPTDTVLMATKKMLELRLSSAVVTVEN---KPRGILTSKDILMRVISQNLPAD 207
           K   V++  T T+     ++ + R+  AV+T  +   +P  +++ +DIL R ++Q L  D
Sbjct: 12  KRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDIL-RAVAQRLDLD 70

Query: 208 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
                 +   +P       P+  A   M      H+ VV+++G++V V+
Sbjct: 71  -GPAMPIAN-SPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVL 117

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 75.4 bits (186), Expect = 9e-17
 Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 9/111 (8%)

Query: 1   MAARRVDALLLT--DSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDT 58
           +A  RV   +LT  D+      +++++DI  R +A+ L+L+  P   +   +P  VL   
Sbjct: 31  LAKNRVGLAVLTARDNPKRPVAVVSERDIL-RAVAQRLDLD-GPAMPIAN-SPITVLDTD 87

Query: 59  LAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIARMERAAE 105
               A +KM +   RH+ VV +NGE++ +L   D+       +        
Sbjct: 88  PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERAILLELATAEVP 138

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 19/163 (11%), Positives = 46/163 (28%), Gaps = 51/163 (31%)

Query: 41  TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALL------DIAKCLY 94
              S+++ R P  +       E   ++ + +     +         +      DI + + 
Sbjct: 5   IRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAV- 63

Query: 95  DAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKV 154
                      +   +      +                                  +  
Sbjct: 64  ----------AQRLDLDGPAMPI---------------------A------------NSP 80

Query: 155 VTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDIL 196
           +T+  TD V +A +KM    +   VV  +N +  G+L+ +D+ 
Sbjct: 81  ITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLC 123

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 38.4 bits (90), Expect = 7e-04
 Identities = 4/44 (9%), Positives = 12/44 (27%)

Query: 208 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGD 251
           +    +++   P        I +    +   +     +  RD  
Sbjct: 4   AIRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNP 47

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 87.8 bits (218), Expect = 4e-21
 Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 4/114 (3%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVISQNLPADSTL 210
           S  V I    +V  A   M    + +  V   +    G+L+ KD+L   I Q     S  
Sbjct: 24  SIPVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQEL-TSVP 82

Query: 211 VEKVMTPNPECATI--DTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHIT 262
           V  +MT  P       +  ++D    + + +   LPV+       +V+  +  T
Sbjct: 83  VHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKT 136

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 77.0 bits (190), Expect = 3e-17
 Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 10/104 (9%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNP--TFVLSDT 58
           M    V  L + D +A+L G+L+ KD+    I ++  L   PV  +MTR P  T    + 
Sbjct: 42  MFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQ-ELTSVPVHIIMTRMPNITVCRRED 100

Query: 59  LAVEALQKMVQGKFRHLPVVENGEVIALL-------DIAKCLYD 95
             ++  + +++ +   LPV+++ +    +       ++ K L  
Sbjct: 101 YVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVS 144

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 48.1 bits (115), Expect = 4e-07
 Identities = 26/189 (13%), Positives = 63/189 (33%), Gaps = 52/189 (27%)

Query: 22  LTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-EN 80
           +T K   T+++A +L  ++  V    +  P  +  +    +A+  M       L VV  +
Sbjct: 1   MTGKTG-TQLLADKL--KKLQVKDFQSI-PVVIHENVSVYDAICTMFLEDVGTLFVVDRD 56

Query: 81  GEVIALL---DIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRE 137
             ++ +L   D+ +           +  + +  +  V  +                    
Sbjct: 57  AVLVGVLSRKDLLR----------ASIGQQELTSVPVHII-------------------- 86

Query: 138 RMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPR---GILTSK 193
            M R            +      D V+   K ++E ++ +  V+   +K     G +T  
Sbjct: 87  -MTR---------MPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKT 136

Query: 194 DILMRVISQ 202
           ++   ++S 
Sbjct: 137 NMTKILVSL 145

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 87.1 bits (216), Expect = 6e-21
 Identities = 22/130 (16%), Positives = 50/130 (38%), Gaps = 7/130 (5%)

Query: 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPR 187
           N  I   ++   +  +  ++    KV  +   + +  A   +++   S+  V+    K  
Sbjct: 2   NAMISIPKDEFQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLH 61

Query: 188 GILTSKDILMRVISQNL----PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHL 243
           G++++  IL  ++          +   VE+VM  +     ++     AL +  D  F  +
Sbjct: 62  GLISTAMILDGILGLERIEFERLEEMKVEQVMKQDIPVLKLEDSFAKALEMTIDHPF--I 119

Query: 244 PVVDRDGDVV 253
             V+ DG   
Sbjct: 120 CAVNEDGYFE 129

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 57.0 bits (138), Expect = 3e-10
 Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 10/110 (9%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIAREL----NLEETPVSKVMTRNPTFVLS 56
           +      A+ + D    L G+++   I   ++  E      LEE  V +VM ++   +  
Sbjct: 43  LVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERIEFERLEEMKVEQVMKQDIPVLKL 102

Query: 57  DTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIARMER 102
           +    +AL+  +   F  +  V E+G    +L    I K L   + +  R
Sbjct: 103 EDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLLNKKVRQHNR 150

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 26/165 (15%), Positives = 48/165 (29%), Gaps = 44/165 (26%)

Query: 38  LEETPVSKVMTRNP--TFVLSDTLAVEALQKMVQGKFRHLPVVENGE----VIALLDIAK 91
            ++  V  +M  +     V        AL  +V+  +  +PV++       +I+   I  
Sbjct: 12  FQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILD 71

Query: 92  CLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEK 151
            +           E+ K     VE V                     M           K
Sbjct: 72  GILGLERIEFERLEEMK-----VEQV---------------------M-----------K 94

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196
             +  +   D+   A +  ++       V  +    GILT + IL
Sbjct: 95  QDIPVLKLEDSFAKALEMTIDHPFI-CAVNEDGYFEGILTRRAIL 138

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 91.2 bits (226), Expect = 8e-21
 Identities = 40/289 (13%), Positives = 87/289 (30%), Gaps = 63/289 (21%)

Query: 1   MAARRVDALLLTDS-NALLCGILTDKDI--------------ATRVIARELNLEETPVSK 45
           +    V A  L DS      G+LT  D                  +   ++        +
Sbjct: 63  LVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEHKIETWREVYLQ 122

Query: 46  VMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV--ENGEVIALL---DIAKCLYDAIARM 100
              +    +  +    +A+  +++ K   LPV+  E+G  + +L    I K L   I   
Sbjct: 123 DSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEF 182

Query: 101 ERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPT 160
            +     K++                      E L+   +             +  +  T
Sbjct: 183 PKPEFMSKSL----------------------EELQIGTYAN-----------IAMVRTT 209

Query: 161 DTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNLP------ADSTLVEK 213
             V +A    ++ R+S+  VV  + +   I +  D++     +           +     
Sbjct: 210 TPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRS 269

Query: 214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVI 259
                     +   +   ++ + + +   L VVD    V  +V   D++
Sbjct: 270 HYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDIL 318

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 73.4 bits (180), Expect = 8e-15
 Identities = 43/225 (19%), Positives = 75/225 (33%), Gaps = 36/225 (16%)

Query: 53  FVLSDTLAVEALQKMVQGKFRHLPVV--ENGEVIALLDIAKCLYDAIARMERAAEKGKAI 110
              +     +A   +V    R  P+   +    + +L I     D I  +       K+ 
Sbjct: 49  VFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT----DFINIL---HRYYKSA 101

Query: 111 AAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKM 170
              +  +E+H         T+ E   +  F+P           +V ISP  ++  A   +
Sbjct: 102 LVQIYELEEHK------IETWREVYLQDSFKP-----------LVCISPNASLFDAVSSL 144

Query: 171 LELRLSSAVV--TVENKPRGILTSKDILMRV--------ISQNLPADSTLVEKVMTPNPE 220
           +  ++    V          ILT K IL  +          + +      ++     N  
Sbjct: 145 IRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYANIA 204

Query: 221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 265
                TP+  AL I    +   LPVVD  G VVD+     + + A
Sbjct: 205 MVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLA 249

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 69.2 bits (169), Expect = 2e-13
 Identities = 24/154 (15%), Positives = 52/154 (33%), Gaps = 17/154 (11%)

Query: 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV--TVENK 185
           P +        M       +IP  SK+V    +  V  A   ++   + +A +  + +  
Sbjct: 21  PESNSSVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQS 80

Query: 186 PRGILTSKDILMR--------------VISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231
             G+LT  D +                +    +     +  +       C + +  + DA
Sbjct: 81  FVGMLTITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDA 140

Query: 232 LHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITHA 264
           +  +   K   LPV+D + G+ + ++    I   
Sbjct: 141 VSSLIRNKIHRLPVIDPESGNTLYILTHKRILKF 174

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 58.4 bits (141), Expect = 8e-10
 Identities = 35/221 (15%), Positives = 63/221 (28%), Gaps = 49/221 (22%)

Query: 1   MAARRVDALLLTDS-NALLCGILTDKDIATRVIARELNLEETP--------VSKVMTRNP 51
           +   ++  L + D  +     ILT K I   +        +          +      N 
Sbjct: 144 LIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYANI 203

Query: 52  TFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIARMERAAEKG 107
             V + T    AL   VQ +   LPVV E G V+ +    D+     +            
Sbjct: 204 AMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNN------- 256

Query: 108 KAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMAT 167
                            +    T     R   F             V+     +T+    
Sbjct: 257 -----------------LDVSVTKALQHRSHYFEG-----------VLKCYLHETLEAII 288

Query: 168 KKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPAD 207
            +++E  +    VV   +  +GI++  DIL  ++       
Sbjct: 289 NRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVLTGGEKK 329

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 86.7 bits (215), Expect = 1e-20
 Identities = 19/127 (14%), Positives = 50/127 (39%), Gaps = 7/127 (5%)

Query: 132 IETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGIL 190
           +        + ++   +    KV  + P + +  A   + +   S+  V+    K  G++
Sbjct: 1   MTWEHNEFMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLI 60

Query: 191 TSKDILMRVISQNL----PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVV 246
           +   ++  ++          ++  VE+VM  N     +D  ++ A+ ++ +  F  + V 
Sbjct: 61  SMTMMMDAILGLERIEFERLETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVE 118

Query: 247 DRDGDVV 253
           + DG   
Sbjct: 119 NDDGYFA 125

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 56.3 bits (136), Expect = 8e-10
 Identities = 22/116 (18%), Positives = 48/116 (41%), Gaps = 10/116 (8%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIAREL----NLEETPVSKVMTRNPTFVLS 56
           +      A+ + D++  L G+++   +   ++  E      LE   V +VM RN   +  
Sbjct: 39  LTKTGYSAIPVLDTSYKLHGLISMTMMMDAILGLERIEFERLETMKVEEVMNRNIPRLRL 98

Query: 57  DTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIARMERAAEKGK 108
           D   ++A+  +V   F  + V  ++G    +    ++ K L   + R     + G+
Sbjct: 99  DDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQLNKQLHRPNGGRKLGR 152

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 25/191 (13%), Positives = 52/191 (27%), Gaps = 47/191 (24%)

Query: 32  IARELN-LEETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGE----VI 84
           +  E N   +  V   +        V        AL  + +  +  +PV++       +I
Sbjct: 1   MTWEHNEFMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLI 60

Query: 85  ALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSL 144
           ++  +   +           E  K     VE V                     M     
Sbjct: 61  SMTMMMDAILGLERIEFERLETMK-----VEEV---------------------M----- 89

Query: 145 STIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQ-- 202
                    +  +   D+++ A   ++       V   +    GI T +++L ++  Q  
Sbjct: 90  ------NRNIPRLRLDDSLMKAVGLIVNHPFV-CVENDDGYFAGIFTRREVLKQLNKQLH 142

Query: 203 NLPADSTLVEK 213
                  L  K
Sbjct: 143 RPNGGRKLGRK 153

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 84.6 bits (210), Expect = 4e-20
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 7/108 (6%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTL 210
             V+T    + V+ A +KML+ ++SS  V+  ENK  GI+T+ DI   +I      ++T 
Sbjct: 16  KNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKYTLETT- 74

Query: 211 VEKVMTPNPECATIDTPIVDALHIM-----HDGKFLHLPVVDRDGDVV 253
           +  VMT +      D  I++A+  M      +     LPVVD++  +V
Sbjct: 75  IGDVMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLV 122

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 63.4 bits (155), Expect = 1e-12
 Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 10/106 (9%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M   ++ +L + D    + GI+T  DI   +I  +  LE T +  VMT++   +  D   
Sbjct: 34  MLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKYTLE-TTIGDVMTKDVITIHEDASI 92

Query: 61  VEALQKMVQG-----KFRHLPVV-ENGEVIALL---DIAKCLYDAI 97
           +EA++KM            LPVV +N +++ ++   DI + +   I
Sbjct: 93  LEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTISKII 138

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 56.1 bits (136), Expect = 6e-10
 Identities = 40/176 (22%), Positives = 59/176 (33%), Gaps = 53/176 (30%)

Query: 37  NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKC 92
            L+   V  VMT+N          VEA +KM++ K   LPV+ +  +VI ++   DI   
Sbjct: 4   TLKNIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGY- 62

Query: 93  LYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKS 152
                            +   +  V                     M             
Sbjct: 63  ---------NLIRDKYTLETTIGDV---------------------M-----------TK 81

Query: 153 KVVTISPTDTVLMATKKMLELRLSSA------VVTVENKPRGILTSKDILMRVISQ 202
            V+TI    ++L A KKM              VV   NK  GI++  DI+ R IS+
Sbjct: 82  DVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDII-RTISK 136

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 48.4 bits (116), Expect = 2e-07
 Identities = 16/50 (32%), Positives = 24/50 (48%)

Query: 207 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
            +  V+ VMT N   A     +V+A   M   K   LPV+D +  V+ +V
Sbjct: 6   KNIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIV 55

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 84.8 bits (210), Expect = 6e-20
 Identities = 18/130 (13%), Positives = 49/130 (37%), Gaps = 7/130 (5%)

Query: 132 IETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGIL 190
           I    +++   ++   + E  KV  +   + +  A   + +   ++  V+    +  G++
Sbjct: 4   ISLQSDQLLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLI 63

Query: 191 TSKDILMRVISQNL----PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVV 246
            +  I+  +           D   VE+VM  +     I+ PI+    ++ +  F  + V 
Sbjct: 64  GTNMIMNSIFGLERIEFEKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNGF--VCVE 121

Query: 247 DRDGDVVDVV 256
           + +     + 
Sbjct: 122 NDEQVFEGIF 131

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 54.8 bits (132), Expect = 2e-09
 Identities = 15/110 (13%), Positives = 38/110 (34%), Gaps = 10/110 (9%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIAREL----NLEETPVSKVMTRNPTFVLS 56
           +      A+ + D +  L G++    I   +   E      L++  V +VM  +   +  
Sbjct: 42  LTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEEVMLTDIPRLHI 101

Query: 57  DTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIARMER 102
           +   ++    ++   F  + V  +      +     + K L   I  + +
Sbjct: 102 NDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKELNKHIRSLNK 149

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 23/176 (13%), Positives = 49/176 (27%), Gaps = 47/176 (26%)

Query: 32  IARELN-LEETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGE----VI 84
           I+ + + L E  V + M        V        AL  + +  +  +PV++       +I
Sbjct: 4   ISLQSDQLLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLI 63

Query: 85  ALLDIAKCLYDA-IARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPS 143
               I   ++       E+  +                            T+ E M    
Sbjct: 64  GTNMIMNSIFGLERIEFEKLDQI---------------------------TVEEVM---- 92

Query: 144 LSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRV 199
                   + +  +   D ++     ++       V   E    GI T + +L  +
Sbjct: 93  -------LTDIPRLHINDPIMKGFGMVINNGFV-CVENDEQVFEGIFTRRVVLKEL 140

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 9/56 (16%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 211 VEKVMTPNPECATI--DTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264
           V + M    + A +     +  AL ++    +  +PV+D    +  ++    I ++
Sbjct: 16  VGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNS 71

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 83.3 bits (206), Expect = 2e-18
 Identities = 41/287 (14%), Positives = 87/287 (30%), Gaps = 82/287 (28%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
               +V +  + +    L GI++ K I        +N +E  ++ ++ R+   V  +   
Sbjct: 27  FKKYKVRSFPVVNKEGKLVGIISVKRIL-------VNPDEEQLAMLVKRDVPVVKENDTL 79

Query: 61  VEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIARMERAAEKGKAIAAAVEG 116
            +A + M++  +R + VV   G+ + +L   DI +  +    + +    + +        
Sbjct: 80  KKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSEKYK--GVEIEPYYQRY-- 135

Query: 117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLS 176
                                                V  +     +  A K +L     
Sbjct: 136 -------------------------------------VSIVWEGTPLKAALKALLLSNSM 158

Query: 177 SAVV-TVENKPRGILTSKDIL-----------------------------MRVISQNLPA 206
           +  V   E    GI+   D+L                             +      L  
Sbjct: 159 ALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQL 218

Query: 207 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 253
            +  V ++MT +   AT    + +    M       LPV+  +GD++
Sbjct: 219 PNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLI 265

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 78.7 bits (194), Expect = 8e-17
 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 8/101 (7%)

Query: 154 VVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTLVE 212
            VTI+   T   A +   + ++ S  VV  E K  GI++ K IL       +  D   + 
Sbjct: 11  PVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRIL-------VNPDEEQLA 63

Query: 213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 253
            ++  +      +  +  A  +M +  +  + VVD  G  V
Sbjct: 64  MLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPV 104

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 77.1 bits (190), Expect = 3e-16
 Identities = 51/248 (20%), Positives = 84/248 (33%), Gaps = 56/248 (22%)

Query: 43  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIA 98
           V  +MT+NP  +        AL+   + K R  PVV + G+++ ++    I     +   
Sbjct: 3   VKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNPDE--- 59

Query: 99  RMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTIS 158
                                             E L   + R            V  + 
Sbjct: 60  ----------------------------------EQLAMLVKRD-----------VPVVK 74

Query: 159 PTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP 217
             DT+  A K MLE       VV  + KP GILT  DI+ R  +++       +E     
Sbjct: 75  ENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSEKYKGVEIEPYYQR 134

Query: 218 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGD---VVDVVDVIHITHAAVATVGNTAG 274
                   TP+  AL  +     + LPVVD +G+   +VD  D++  +            
Sbjct: 135 YVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELA 194

Query: 275 SNNEAAST 282
           +++E    
Sbjct: 195 ASSEEEWI 202

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 74.1 bits (182), Expect = 3e-15
 Identities = 36/201 (17%), Positives = 61/201 (30%), Gaps = 17/201 (8%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M       +++ DS     GILT  DI  R  A+    +   +     R  + V   T  
Sbjct: 86  MLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSEKYKGVEIEPYYQRYVSIVWEGTPL 145

Query: 61  VEALQKMVQGKFRHLPVV-ENGE---VIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG 116
             AL+ ++      LPVV   G    ++   D+ +                      +E 
Sbjct: 146 KAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILES 205

Query: 117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLS 176
                           + + E M              V+  +P  TV     KM +  + 
Sbjct: 206 HPTLLFEKFELQLP-NKPVAEIM-----------TRDVIVATPHMTVHEVALKMAKYSIE 253

Query: 177 SA-VVTVENKPRGILTSKDIL 196
              V+  E    G++   D+L
Sbjct: 254 QLPVIRGEGDLIGLIRDFDLL 274

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 79.1 bits (196), Expect = 3e-18
 Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 6/103 (5%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTL 210
              +T     +++ A K +++  ++   +V    K  GI+TS DI   +           
Sbjct: 9   KPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNKKT----- 63

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 253
           +E++MT N   A  D P+      M       +PVVD    VV
Sbjct: 64  IEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVV 106

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 63.7 bits (156), Expect = 7e-13
 Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 9/99 (9%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           +    ++ L + D +  L GI+T  DIA     + L   +  + ++MTRN      D   
Sbjct: 27  LIKHNINHLPIVDEHGKLVGIITSWDIA-----KALAQNKKTIEEIMTRNVITAHEDEPV 81

Query: 61  VEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYD 95
                KM +     +PVV +   V+ ++   DI++    
Sbjct: 82  DHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFGG 120

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 55.2 bits (134), Expect = 8e-10
 Identities = 36/168 (21%), Positives = 66/168 (39%), Gaps = 52/168 (30%)

Query: 41  TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDA 96
           T V  ++++ P    S+   +EA + +++    HLP+V E+G+++ ++   DIAK    A
Sbjct: 1   TLVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAK----A 56

Query: 97  IARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVT 156
           +A+ ++                               T+ E M              V+T
Sbjct: 57  LAQNKK-------------------------------TIEEIM-----------TRNVIT 74

Query: 157 ISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQN 203
               + V     KM +  +S   VV    +  GI+TS+DI  R+    
Sbjct: 75  AHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDIS-RLFGGK 121

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 51.4 bits (124), Expect = 2e-08
 Identities = 15/45 (33%), Positives = 25/45 (55%)

Query: 209 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 253
           TLV+ +++  P  A  +  I++A  I+      HLP+VD  G +V
Sbjct: 1   TLVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLV 45

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 76.8 bits (190), Expect = 3e-17
 Identities = 17/118 (14%), Positives = 41/118 (34%), Gaps = 10/118 (8%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTL 210
             + +   T  V+   + + + R+SS  ++        +  + D+L  +        S  
Sbjct: 19  DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLS 78

Query: 211 VEKVMT------PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVI 259
           V + +             T +  +   +  +   +     VVD  G +V V+   D++
Sbjct: 79  VGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDIL 136

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 56.0 bits (136), Expect = 6e-10
 Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 12/104 (11%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFV------ 54
           +   RV ++ + D N  L  +    D+   +     N     V + + R           
Sbjct: 37  LTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTC 96

Query: 55  -LSDTLAVEALQKMVQGKFRHLPVV-ENGE---VIALLDIAKCL 93
             +D L+   +  + + +     VV + G    V+ L DI K +
Sbjct: 97  TKNDKLS-TIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI 139

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 53.7 bits (130), Expect = 4e-09
 Identities = 29/174 (16%), Positives = 58/174 (33%), Gaps = 41/174 (23%)

Query: 34  RELNLEETPVSKV---MTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALLDI 89
           RE +  + P+  +      N       T  ++ +Q + QG+   +P++ ENG +I +   
Sbjct: 1   RETHFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVY-- 58

Query: 90  AKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIP 149
               YD +  ++                           N    ++ E +          
Sbjct: 59  --EAYDVLGLIKGGIY-----------------------NDLSLSVGEAL-----MRRSD 88

Query: 150 EKSKVVTISPTDTVLMATKKMLEL---RLSSAVVTVENKPRGILTSKDILMRVI 200
           +   V T +  D +      + +    R    VV    +  G+LT  DIL  ++
Sbjct: 89  DFEGVYTCTKNDKLSTIMDNIRKARVHRF--FVVDDVGRLVGVLTLSDILKYIL 140

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 47.5 bits (114), Expect = 5e-07
 Identities = 11/54 (20%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIHI 261
           +  +   N +   + TP++D + ++  G+   +P++D +G +++V    DV+ +
Sbjct: 13  LNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGL 66

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 77.0 bits (190), Expect = 4e-17
 Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 9/110 (8%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDIL-------MRVISQN 203
               T+  T T+  A   M  L +    +V    K  GI++ +D+L        R    +
Sbjct: 13  RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGD 72

Query: 204 LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 253
             A  T + +VM  +         + ++   M   K   LPVV     +V
Sbjct: 73  SLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA-KDVLV 121

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 67.3 bits (165), Expect = 1e-13
 Identities = 26/130 (20%), Positives = 50/130 (38%), Gaps = 11/130 (8%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDI-------ATRVIARELNLEETPVSKVMTRNPTF 53
           M A  +  + + D+N  L GI++ +D+         R    +    ETP+ +VM  + T 
Sbjct: 31  MEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFEVMHTDVTS 90

Query: 54  VLSDTLAVEALQKMVQGKFRHLPVVENGEVIALL---DIAKCLYDAIARMERAAEKGKAI 110
           V       E+   M + K   LPVV    ++ ++   D      + +  ++  +E  +  
Sbjct: 91  VAPQAGLKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFVTIAIN-LLELQEESEPDELD 149

Query: 111 AAAVEGVEKH 120
                    H
Sbjct: 150 EEQEGHHHHH 159

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 56.9 bits (138), Expect = 4e-10
 Identities = 27/180 (15%), Positives = 61/180 (33%), Gaps = 38/180 (21%)

Query: 43  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIA 98
           V  +MTR+P  +L      +A   M     RH+P+V  N +++ ++   D+      ++ 
Sbjct: 7   VEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQ 66

Query: 99  RMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTIS 158
           R  +                                L E M            + V +++
Sbjct: 67  RSAQGDSLAFET-----------------------PLFEVM-----------HTDVTSVA 92

Query: 159 PTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN 218
           P   +  +   M + ++    V  ++   GI+T  D +   I+     + +  +++    
Sbjct: 93  PQAGLKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFVTIAINLLELQEESEPDELDEEQ 152

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 14/47 (29%), Positives = 24/47 (51%)

Query: 210 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
            VE +MT +P        + DA H+M      H+P+VD +  ++ +V
Sbjct: 6   KVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIV 52

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 77.1 bits (190), Expect = 5e-17
 Identities = 26/140 (18%), Positives = 55/140 (39%), Gaps = 30/140 (21%)

Query: 151 KSKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLP---- 205
           +  +  + P+ +V  A + ++E +++   V+       G+++  D+L             
Sbjct: 13  RQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDT 72

Query: 206 ----------------------ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHL 243
                                     +V  +MTP+P      T + DA  ++ + KF  L
Sbjct: 73  NLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRL 132

Query: 244 PVVDRDGDVVDVV---DVIH 260
           PVVD DG ++ ++   +V+ 
Sbjct: 133 PVVDADGKLIGILTRGNVVR 152

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 57.4 bits (139), Expect = 5e-10
 Identities = 31/182 (17%), Positives = 63/182 (34%), Gaps = 20/182 (10%)

Query: 43  VSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALLDIAKCLYDAIAR 99
           V   MT  +N   V   T   +AL+ +V+ K   LPV+ +N  ++ ++      YD +A 
Sbjct: 6   VGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVV----SDYDLLAL 61

Query: 100 MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPE--KSKVVTI 157
              +                                 +++   +   ++ +      + +
Sbjct: 62  DSISGRSQND----------TNLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTPSPLVV 111

Query: 158 SPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMT 216
             +  +  A + +LE +     VV  + K  GILT  +++   +     ADS        
Sbjct: 112 RDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQIKRNADSISGRSQND 171

Query: 217 PN 218
            N
Sbjct: 172 TN 173

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 54.7 bits (132), Expect = 3e-09
 Identities = 28/135 (20%), Positives = 55/135 (40%), Gaps = 34/135 (25%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELN----------------------- 37
           +  ++V  L + D N  L G+++D D+         +                       
Sbjct: 32  LVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWKTFNELQKL 91

Query: 38  ---LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIA 90
                   V  +MT +P  V   T   +A + +++ KFR LPVV  +G++I +L   ++ 
Sbjct: 92  ISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVV 151

Query: 91  KCLYDAIARMERAAE 105
           +    A  +++R A+
Sbjct: 152 R----AALQIKRNAD 162

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 76.2 bits (188), Expect = 7e-17
 Identities = 23/127 (18%), Positives = 48/127 (37%), Gaps = 19/127 (14%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLP----- 205
            K   +     +     ++LE  ++    V  +NK  G++    +L              
Sbjct: 24  LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKE 83

Query: 206 ---------ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
                      +    ++M  +P    +DTP+ +AL +M D     +PVVD  G++V  +
Sbjct: 84  ELIRSSMKRLIAKNASEIML-DPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDL 142

Query: 257 ---DVIH 260
              +++ 
Sbjct: 143 NSLEILL 149

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 58.8 bits (143), Expect = 9e-11
 Identities = 25/161 (15%), Positives = 57/161 (35%), Gaps = 27/161 (16%)

Query: 38  LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALLDIAKCLYDA 96
           ++   V K+++  PT V  DT   E + ++++        V  + +++ ++ +   L  +
Sbjct: 13  MKVKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVS 72

Query: 97  IARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVT 156
                    K + I ++++ +                   E M               V 
Sbjct: 73  GFHFFGFIPKEELIRSSMKRLIAK-------------NASEIM------------LDPVY 107

Query: 157 ISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDIL 196
           +     +  A K M++  +    VV  + +  G L S +IL
Sbjct: 108 VHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEIL 148

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 53.1 bits (128), Expect = 8e-09
 Identities = 22/120 (18%), Positives = 39/120 (32%), Gaps = 23/120 (19%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIAREL--------------NLEETPVSKV 46
           +    V   +    +  L G++    +                        L     S++
Sbjct: 42  ILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLIAKNASEI 101

Query: 47  MTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIARMER 102
           M      V  DT   EAL+ M+    + +PVV E GE++  L   +I      A+ +   
Sbjct: 102 MLDPVY-VHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILL----ALWKGRE 156

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIHI 261
           V K+++  P     DTPI + +  + +        V RD  +V ++    ++ +
Sbjct: 18  VCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKV 71

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 76.9 bits (189), Expect = 5e-16
 Identities = 35/287 (12%), Positives = 83/287 (28%), Gaps = 57/287 (19%)

Query: 1   MAARRVDALLLTDS-NALLCGILTDKDIATRV---------------IARELNLEETPVS 44
           +    + +  L DS  +   G+LT  D    +               +  +   +     
Sbjct: 58  LLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKFELVDKLQLDGLKDIERAL 117

Query: 45  KVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCL--YDAIARMER 102
            V   +   +       EA  KM++ +   +P+++  E      +   L  Y  +  +  
Sbjct: 118 GVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVAL 177

Query: 103 AAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDT 162
              +                                +  P     I  +  + +   T  
Sbjct: 178 NCRE-----------------------------THFLKIPIGDLNIITQDNMKSCQMTTP 208

Query: 163 VLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMT----- 216
           V+   + + + R+SS  ++        +  + D+L  +        S  V + +      
Sbjct: 209 VIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRRSDD 268

Query: 217 -PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVI 259
                  T +  +   +  +   +     VVD  G +V V+   D++
Sbjct: 269 FEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDIL 315

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 66.9 bits (163), Expect = 1e-12
 Identities = 36/225 (16%), Positives = 76/225 (33%), Gaps = 39/225 (17%)

Query: 56  SDTLAVEALQKMVQGKFRHLPVV--ENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAA 113
           +  L  ++L  ++Q      P+   +      LL       D I  +             
Sbjct: 47  TSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTT----DFINVI------------- 89

Query: 114 VEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLEL 173
                  +  S       ++ L+    +     +  ++    +I P+  +  A  KMLE 
Sbjct: 90  ------QYYFSNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLES 143

Query: 174 RLSSAVV------TVENKPRGILTSKDILMRVIS-----QNLPADSTLVEKVMTPNPECA 222
           R     +      T       +LT   IL  V         L      +  +   N +  
Sbjct: 144 RSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFLKIPIGDLNIITQDNMKSC 203

Query: 223 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIHITHA 264
            + TP++D + ++  G+   +P++D +G +++V    DV+ +   
Sbjct: 204 QMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKG 248

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 74.8 bits (184), Expect = 6e-16
 Identities = 21/145 (14%), Positives = 48/145 (33%), Gaps = 21/145 (14%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNLPADSTLV 211
               +  + TV     +M + + +   V   E   RG++  +D+L            + V
Sbjct: 22  DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDL-------DLDSSV 74

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV------DVVDVIHITHAA 265
              ++        +  I  AL +  + +  +LPVVD +  +       D ++ +    A 
Sbjct: 75  FNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEALAM 134

Query: 266 -------VATVGNTAGSNNEAASTM 283
                     + +  G   +    +
Sbjct: 135 DVPGIRFSVLLEDKPGELRKVVDAL 159

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 56.3 bits (136), Expect = 1e-09
 Identities = 18/102 (17%), Positives = 40/102 (39%), Gaps = 11/102 (10%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M   + +  ++ D      G++  +D+            ++ V   ++    FV  +   
Sbjct: 39  MRQYQTNECIVKDREGHFRGVVNKEDLLDL-------DLDSSVFNKVSLPDFFVHEEDNI 91

Query: 61  VEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIA 98
             AL   ++ +  +LPVV E   +   +   D  + L +A+A
Sbjct: 92  THALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEALA 133

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 51.7 bits (124), Expect = 5e-08
 Identities = 23/166 (13%), Positives = 43/166 (25%), Gaps = 53/166 (31%)

Query: 43  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIA 98
           V K +T++   V       E L +M Q +     V    G    ++   D+     D   
Sbjct: 15  VKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDLD--- 71

Query: 99  RMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTIS 158
                                              ++  ++                 + 
Sbjct: 72  ----------------------------------SSVFNKV-----------SLPDFFVH 86

Query: 159 PTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQN 203
             D +  A    LE +     VV  E + +G ++  D L  +I   
Sbjct: 87  EEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEAL 132

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 49.0 bits (117), Expect = 5e-07
 Identities = 12/47 (25%), Positives = 19/47 (40%)

Query: 210 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
            V+K +T +         + + LH M   +     V DR+G    VV
Sbjct: 14  KVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVV 60

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* Length = 149

 Score = 71.4 bits (176), Expect = 3e-15
 Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 8   ALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKM 67
              + D +  + GI TD D+  RV    +++ +  ++ VMTR    +   TLAV+AL  M
Sbjct: 63  MTAICDDDMNIIGIFTDGDLR-RVFDTGVDMRDASIADVMTRGGIRIRPGTLAVDALNLM 121

Query: 68  VQGKFRHLPVVENGEVIALLDI 89
                  + V +   ++ ++ +
Sbjct: 122 QSRHITCVLVADGDHLLGVVHM 143

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* Length = 149

 Score = 57.1 bits (139), Expect = 3e-10
 Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 6/106 (5%)

Query: 157 ISPTDTVLMATKKMLELRL-SSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVM 215
           +    T+  A  ++    L  +A+   +    GI T  D L RV    +      +  VM
Sbjct: 43  VGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGD-LRRVFDTGVDMRDASIADVM 101

Query: 216 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHI 261
           T         T  VDAL++M       + V D D     ++ V+H+
Sbjct: 102 TRGGIRIRPGTLAVDALNLMQSRHITCVLVADGDH----LLGVVHM 143

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 70.5 bits (173), Expect = 4e-15
 Identities = 15/106 (14%), Positives = 35/106 (33%), Gaps = 2/106 (1%)

Query: 151 KSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTL 210
           ++     +   +   A +++     + A V    +  G++    +L     +  P     
Sbjct: 12  ETDYPVFTLGGSTADAARRLAASGCACAPVLDGERYLGMVHLSRLLE--GRKGWPTVKEK 69

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
           + + +            + D L  +   K   +P+ D DG    VV
Sbjct: 70  LGEELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVV 115

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 47.0 bits (112), Expect = 7e-07
 Identities = 10/85 (11%), Positives = 25/85 (29%), Gaps = 4/85 (4%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           +AA       + D    L G++    +      +     +  + + +             
Sbjct: 31  LAASGCACAPVLDGERYL-GMVHLSRLLE--GRKGWPTVKEKLGEELLETVRSYRPGEQL 87

Query: 61  VEALQKMVQGKFRHLPVV-ENGEVI 84
            + L  +   K   +P+  E+G   
Sbjct: 88  FDNLISVAAAKCSVVPLADEDGRYE 112

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 14/155 (9%), Positives = 41/155 (26%), Gaps = 41/155 (26%)

Query: 43  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMER 102
            S +   +           +A +++        PV++    + ++ ++      +   + 
Sbjct: 7   FSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDGERYLGMVHLS----RLLEGRKG 62

Query: 103 AAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDT 162
                                         E L E +              V +  P + 
Sbjct: 63  WPTVK-------------------------EKLGEELLE-----------TVRSYRPGEQ 86

Query: 163 VLMATKKMLELRLSS-AVVTVENKPRGILTSKDIL 196
           +      +   + S   +   + +  G+++ K IL
Sbjct: 87  LFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRIL 121

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 67.2 bits (164), Expect = 1e-12
 Identities = 37/283 (13%), Positives = 79/283 (27%), Gaps = 55/283 (19%)

Query: 1   MAARRVDALLLTDSNAL-LCGILTDKDIATRVIARELNLEETPVSK-------------- 45
           +    + +  L DS A    G+LT  D    VI         P +               
Sbjct: 50  LTLNNIVSAPLWDSEANKFAGLLTMADFV-NVIKYYYQSSSFPEAIAEIDKFRLLGLREV 108

Query: 46  -----VMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARM 100
                 +     +V      ++A   M + + R +P+++                     
Sbjct: 109 ERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDV------------------DG 150

Query: 101 ERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPT 160
           E  +E   ++      + K    +          L     + ++ T       + T S  
Sbjct: 151 ETGSEMIVSVLT-QYRILKFISMNCKETAMLRVPLN----QMTIGTWSN----LATASME 201

Query: 161 DTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 219
             V    K + E  +S+  +V  E     +  S D++  +   +       V + +   P
Sbjct: 202 TKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRP 261

Query: 220 E------CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
                         +      +   +   L VVD +  +  ++
Sbjct: 262 ANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGIL 304

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 64.5 bits (157), Expect = 1e-11
 Identities = 37/224 (16%), Positives = 76/224 (33%), Gaps = 38/224 (16%)

Query: 56  SDTLAVEALQKMVQGKFRHLPVV--ENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAA 113
                  +L  +        P+   E  +   LL +A    D +  ++   +      A 
Sbjct: 39  VTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMA----DFVNVIKYYYQSSSFPEAI 94

Query: 114 VEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLEL 173
            E                I+  R    R     I     + + + P  +++ A   M + 
Sbjct: 95  AE----------------IDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKS 138

Query: 174 R------LSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKV------MTPNPEC 221
           R      +     T       +LT   IL + IS N    + L   +         N   
Sbjct: 139 RARRIPLIDVDGETGSEMIVSVLTQYRIL-KFISMNCKETAMLRVPLNQMTIGTWSNLAT 197

Query: 222 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIHIT 262
           A+++T + D + ++ +     +P+V+ +G +++V    DV+H+ 
Sbjct: 198 ASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLI 241

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 55.3 bits (133), Expect = 9e-09
 Identities = 24/140 (17%), Positives = 51/140 (36%), Gaps = 20/140 (14%)

Query: 147 IIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV--TVENKPRGILTSKDILMRVI---- 200
           ++P   +++    T  V  +   +    + SA +  +  NK  G+LT  D +  +     
Sbjct: 27  VLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQ 86

Query: 201 SQNLPADSTLVEK--------------VMTPNPECATIDTPIVDALHIMHDGKFLHLPVV 246
           S + P     ++K               + P          ++DA   M   +   +P++
Sbjct: 87  SSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLI 146

Query: 247 DRDGDVVDVVDVIHITHAAV 266
           D DG+    + V  +T   +
Sbjct: 147 DVDGETGSEMIVSVLTQYRI 166

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 53.3 bits (128), Expect = 4e-08
 Identities = 20/125 (16%), Positives = 45/125 (36%), Gaps = 12/125 (9%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFV------ 54
           +A + + A+ + +S   L  +    D+   +   + +  +  V + + + P         
Sbjct: 211 LAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRPANFDGVHTC 270

Query: 55  -LSDTLAVEALQKMVQGKFRHLPVV-ENGE---VIALLDIAKCLYDAIARMERAAEKGKA 109
             +D L       +   +   L VV EN +   +++L DI   +           E+   
Sbjct: 271 RATDRLD-GIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYDKTTTPGVPEQTDN 329

Query: 110 IAAAV 114
             +AV
Sbjct: 330 FESAV 334

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 43.3 bits (102), Expect = 6e-05
 Identities = 32/217 (14%), Positives = 63/217 (29%), Gaps = 52/217 (23%)

Query: 6   VDALLLTDSNALLCGILTDKDIATRVIARELNLEETP--VSKV------MTRNPTFVLSD 57
           +D    T S  ++  +LT   I   +    +N +ET      +         N      +
Sbjct: 146 IDVDGETGSEMIV-SVLTQYRI---LKFISMNCKETAMLRVPLNQMTIGTWSNLATASME 201

Query: 58  TLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIARMERAAEKGKAIAAA 113
           T   + ++ + +     +P+V   G ++ +    D+   + D                  
Sbjct: 202 TKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQD------------------ 243

Query: 114 VEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLEL 173
                          +    ++ E + +            V T   TD +      +   
Sbjct: 244 ------------GDYSNLDLSVGEALLKRP-----ANFDGVHTCRATDRLDGIFDAIKHS 286

Query: 174 RLSSA-VVTVENKPRGILTSKDILMRVISQNLPADST 209
           R+    VV    K  GIL+  DIL  +I         
Sbjct: 287 RVHRLFVVDENLKLEGILSLADILNYIIYDKTTTPGV 323

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 63.9 bits (155), Expect = 2e-12
 Identities = 31/185 (16%), Positives = 61/185 (32%), Gaps = 29/185 (15%)

Query: 30  RVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDI 89
           R++ R +      V   M  + T +  DT   E ++ +        P+VE+ E   L+ I
Sbjct: 2   RILGRNIGSHHVRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGI 61

Query: 90  AKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIP 149
            +     +  ++                                   ++  +  L+   P
Sbjct: 62  VQ-RAQLVQALQAEP-------------------------PSRAPGHQQCLQDILARGCP 95

Query: 150 EKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQ--NLPAD 207
            +   +T+    T+  A      L L S  VT   +  G ++  ++  + IS   N PA 
Sbjct: 96  TEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSRGRAVGCVSWVEMK-KAISNLTNPPAP 154

Query: 208 STLVE 212
              +E
Sbjct: 155 KEFLE 159

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 45.8 bits (108), Expect = 4e-06
 Identities = 15/98 (15%), Positives = 38/98 (38%), Gaps = 2/98 (2%)

Query: 198 RVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDR--DGDVVDV 255
           R++ +N+ +    VE  M  +      DTP+ + + ++        P+V+      +V +
Sbjct: 2   RILGRNIGSHHVRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGI 61

Query: 256 VDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMA 293
           V    +  A  A   + A  + +    ++ +   +   
Sbjct: 62  VQRAQLVQALQAEPPSRAPGHQQCLQDILARGCPTEPV 99

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 45.4 bits (107), Expect = 4e-06
 Identities = 15/117 (12%), Positives = 30/117 (25%), Gaps = 13/117 (11%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVV---TVENKPRGILTSKDIL---------MRV 199
             + T++    +    K +    ++   +   T      GI+    ++            
Sbjct: 21  HSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAP 80

Query: 200 ISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
             Q    D         P       +T +  A ++        L V    G  V  V
Sbjct: 81  GHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCV 136

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 61.9 bits (149), Expect = 4e-11
 Identities = 25/225 (11%), Positives = 60/225 (26%), Gaps = 11/225 (4%)

Query: 43  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGE----VIALLDIAKCLYDAIA 98
           V  +       +  +     A   M     + +PV +       +++  +I     D   
Sbjct: 9   VEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDIWD 68

Query: 99  RMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTIS 158
               A               +    +        + +   M   SL   I E    +   
Sbjct: 69  SNILAKSATSLDNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGD 128

Query: 159 PTDTVLMATKK-------MLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 211
             +      +              S  ++ +  K    + +        S+ +     + 
Sbjct: 129 RAEIQAELIELKVSLLIVTGGHTPSKEIIELAKKNNITVITTPHDSFTASRLIVQSLPVD 188

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
             +   N    + D  + D    M + ++ + PV+D +  VV  +
Sbjct: 189 YVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSI 233

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 48.4 bits (114), Expect = 1e-06
 Identities = 18/109 (16%), Positives = 41/109 (37%), Gaps = 3/109 (2%)

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVG 270
           VE +          +  +  A +IM D     +PV D +  ++ ++   +IT   +    
Sbjct: 9   VEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDIWD 68

Query: 271 NTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTA 319
           +   + +  +   +        A + N +EE     G +  A+  A++ 
Sbjct: 69  SNILAKSATSLDNILDT---LSAEAQNINEERKVFPGKVVVAAMQAESL 114

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486

 Score = 57.1 bits (139), Expect = 4e-09
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 8/96 (8%)

Query: 155 VTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKV 214
           +TI+P +TV  A   M +  +    V  + K  GI+T KD  +         +  LV+++
Sbjct: 104 ITIAPDETVDFALFLMEKHGIDGLPVVEDEKVVGIITKKD--IAAR------EGKLVKEL 155

Query: 215 MTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDG 250
           MT           + +AL IM + +   LPVVD  G
Sbjct: 156 MTKEVITVPESIEVEEALKIMIENRIDRLPVVDERG 191

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Length = 503

 Score = 56.0 bits (136), Expect = 9e-09
 Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 11/102 (10%)

Query: 155 VTISPTDTVLMATKKMLELRLSSAVVTVENKPR----GILTSKDILMRVISQNLPADSTL 210
             + P  T             ++  VT +  P     G++T +D    +         T 
Sbjct: 108 SNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRD--YPIDLTQT---ETK 162

Query: 211 VEKVMTPNPECATI--DTPIVDALHIMHDGKFLHLPVVDRDG 250
           V  +MTP  +  T   DT + +A  I+ + K   LP++D D 
Sbjct: 163 VSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQ 204

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496

 Score = 54.0 bits (131), Expect = 3e-08
 Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 9/99 (9%)

Query: 155 VTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTLVEK 213
           VT+ P  T+    +       +   VVT  N+  GI+T +D  +R ++      +  V  
Sbjct: 100 VTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRD--VRFVTD----LTKSVAA 153

Query: 214 VMTPNPECATI--DTPIVDALHIMHDGKFLHLPVVDRDG 250
           VMTP    AT+       +    MH  +   + VV+ + 
Sbjct: 154 VMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEF 192

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494

 Score = 53.3 bits (129), Expect = 7e-08
 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 9/99 (9%)

Query: 155 VTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTLVEK 213
           +T++P  TV  A   M E ++    VV  E +  G+LT++D  +R         S  ++ 
Sbjct: 106 ITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRD--VRFEKN----LSKKIKD 159

Query: 214 VMTPNPECATI--DTPIVDALHIMHDGKFLHLPVVDRDG 250
           +MTP  +      D  +  A  I+H  +   LP+V +D 
Sbjct: 160 LMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDN 198

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Length = 514

 Score = 51.8 bits (125), Expect = 2e-07
 Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 10/105 (9%)

Query: 155 VTISPTDTVLMATKKMLELRLSSAVVTVENKPR----GILTSKDILMRVISQNLPADSTL 210
           V +SP+ TV    +  +    S   +T          GI+TS+D  +  +++     +TL
Sbjct: 119 VVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRD--IDFLAEK--DHTTL 174

Query: 211 VEKVMTPNPECAT--IDTPIVDALHIMHDGKFLHLPVVDRDGDVV 253
           + +VMTP  E         + +A  I+   K   LP+V+   ++V
Sbjct: 175 LSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELV 219

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Length = 527

 Score = 49.6 bits (119), Expect = 8e-07
 Identities = 15/137 (10%), Positives = 41/137 (29%), Gaps = 13/137 (9%)

Query: 151 KSKVVTISPTDTVLMATKKMLELRLSSAVVTVEN--KPRGILTSKDILMRVISQNLPADS 208
            +  V +    TV  A   M + R+    V  ++     G++  + ++ +++S N     
Sbjct: 392 PAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQSD 451

Query: 209 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGD-------VVDVVDVI-H 260
               K +            +     ++       + ++ ++         +   +DV   
Sbjct: 452 P-AIKALNKRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTF 508

Query: 261 ITHAAVATVGNTAGSNN 277
           I         N   +  
Sbjct: 509 IAAGKQKPKANGTTNGG 525

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A Length = 473

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 25/122 (20%)

Query: 154 VVTISPTDTVLMATKKMLELRLSSA---------VVTVENKPRGILTSKDILMRVISQNL 204
            V +    TV      +  LR ++          VV  + + +G+L+ +D+++       
Sbjct: 165 YVAVREGMTVEEV---LRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA------ 215

Query: 205 PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV------DVVDV 258
               T V ++M P       DT   +   +M D  F  LPVVD +G +V      DV+DV
Sbjct: 216 -DPRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDV 274

Query: 259 IH 260
           + 
Sbjct: 275 LE 276

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1 Length = 286

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 25/122 (20%)

Query: 154 VVTISPTDTVLMATKKMLELRLSSA---------VVTVENKPRGILTSKDILMRVISQNL 204
            V+I    TV  A   M  L+  +          VV  EN   G+++ +D+++       
Sbjct: 147 FVSIVANQTVRSA---MYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVN------ 197

Query: 205 PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV------DVVDV 258
             D TL+  ++        +     D    + D  FL +PV D D  ++      D++DV
Sbjct: 198 -DDDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDV 256

Query: 259 IH 260
           I 
Sbjct: 257 ID 258

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491

 Score = 49.0 bits (118), Expect = 1e-06
 Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 10/100 (10%)

Query: 155 VTISPTDTVLMATKKMLELRLSSAVVT---VENKPRGILTSKDILMRVISQNLPADSTLV 211
             ++P   V  A + M   R+S   +       K  GI+T++D  MR IS      +  +
Sbjct: 101 FFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRD--MRFISD----YNAPI 154

Query: 212 EKVMTPNP-ECATIDTPIVDALHIMHDGKFLHLPVVDRDG 250
            + MT      A + T +  A  I+H+ +   LP+VD  G
Sbjct: 155 SEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSG 194

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511

 Score = 48.7 bits (117), Expect = 2e-06
 Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 10/100 (10%)

Query: 155 VTISPTDTVLMATKKMLELRLSSAVVT---VENKPRGILTSKDILMRVISQNLPADSTLV 211
             ++P   V  A   M + R+S   V     E K  GI+T++D  MR I       S  +
Sbjct: 124 FFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRD--MRFIQD----YSIKI 177

Query: 212 EKVMTPNP-ECATIDTPIVDALHIMHDGKFLHLPVVDRDG 250
             VMT      A + T + +A  I+   K   LP+VD +G
Sbjct: 178 SDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNG 217

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1} Length = 205

 Score = 46.8 bits (112), Expect = 2e-06
 Identities = 19/120 (15%), Positives = 42/120 (35%), Gaps = 23/120 (19%)

Query: 154 VVTISPTDTVLMATKKMLELRLSSA-------VVTVENKPRGILTSKDILMRVISQNLPA 206
           ++ +S   TV  A       R           +V   +K  G +   DI           
Sbjct: 64  MLVLSDKATVAQA---QRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKH-------E 113

Query: 207 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV------DVVDVIH 260
               +  +++ +    T +T ++DA   +   + + LPV+D  G+++          ++ 
Sbjct: 114 PHEPLISLLSEDSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVR 173

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A Length = 278

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 25/122 (20%)

Query: 154 VVTISPTDTVLMATKKMLELRLSSA---------VVTVENKPRGILTSKDILMRVISQNL 204
            V +    TV      +  LR ++          VV  + + +G+L+ +D+++       
Sbjct: 145 YVAVREGMTVEEV---LRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA------ 195

Query: 205 PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV------DVVDV 258
               T V ++M P       DT   +   +M D  F  LPVVD +G +V      DV+DV
Sbjct: 196 -DPRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDV 254

Query: 259 IH 260
           + 
Sbjct: 255 LE 256

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 45.3 bits (107), Expect = 6e-06
 Identities = 32/173 (18%), Positives = 58/173 (33%), Gaps = 19/173 (10%)

Query: 41  TPVSKVMTRNP-----TFVLSDTLAV-EALQKMVQGKFRHLPVVENGEVIALLDIAKCLY 94
           T    VM         T +  D++ V +    + +  +   PVV + E   L+       
Sbjct: 11  TLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFV-LRR 69

Query: 95  DAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKV 154
           D I  +E A +K   + +            +         LR  +               
Sbjct: 70  DLIISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLS-----------P 118

Query: 155 VTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPAD 207
            T++    + +      +L L   +VT   +  GI+T KD+L + I+Q    D
Sbjct: 119 FTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGIITKKDVL-KHIAQMANQD 170

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 7/73 (9%)

Query: 33  ARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALL---DI 89
                     +  ++  +P  V   T     +    +   R   V  NG ++ ++   D+
Sbjct: 100 LPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGIITKKDV 159

Query: 90  AKCLYDAIARMER 102
            K     IA+M  
Sbjct: 160 LK----HIAQMAN 168

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 51/371 (13%), Positives = 109/371 (29%), Gaps = 101/371 (27%)

Query: 17  LLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLP 76
           +   IL+ ++I        + + +  VS       T  L  TL   + Q+ +  KF    
Sbjct: 41  MPKSILSKEEI------DHIIMSKDAVSG------TLRLFWTL--LSKQEEMVQKF---- 82

Query: 77  VVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLR 136
            VE      L    K L   I       +        +E  ++ +  +       +   R
Sbjct: 83  -VEE----VLRINYKFLMSPIK--TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS--R 133

Query: 137 ERMF---RPSLSTIIPE------------KSKVVTISPTDTVLMATKKMLELRLSSAV-- 179
            + +   R +L  + P             K+  V +     V ++ K  ++ ++   +  
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKT-WVALD----VCLSYK--VQCKMDFKIFW 186

Query: 180 VTV--ENKPRGILTSKDILMRVISQNL--PADSTLVEKVMT--------------PNPEC 221
           + +   N P  +L     L+  I  N    +D +   K+                P   C
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 222 ATI-----DTPIVDALHIMHDG--KFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAG 274
             +     +    +A     +   K L   +  R   V D +     TH  ++   ++  
Sbjct: 247 LLVLLNVQNAKAWNAF----NLSCKIL---LTTRFKQVTDFLSAATTTH--ISLDHHSMT 297

Query: 275 SNNEAASTMMQKFWD--------SAMALSP--------NDDEEDNRSEGSLKFASEGADT 318
              +   +++ K+ D          +  +P        +  +     +       +   T
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357

Query: 319 ARYLSYPSPSP 329
               S     P
Sbjct: 358 IIESSLNVLEP 368

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} Length = 632

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 27/175 (15%), Positives = 56/175 (32%), Gaps = 12/175 (6%)

Query: 34  RELNLEETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRH-LPVVENG----EVIAL 86
           R     E    ++M        +  D+        + +   R   PV++        I+ 
Sbjct: 446 RRDRSPEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISR 505

Query: 87  LDIAKCLYDAIARMERAAEKGKAI-----AAAVEGVEKHWGTSISGPNTFIETLRERMFR 141
            +I   L   +  +       + +     A   E +E     + SG ++        +  
Sbjct: 506 KEIVDRLQHVLEDVPEPIAGHRTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLE 565

Query: 142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196
           P+ S ++P     + ++    V       + L  S   VT   K  GI+  +D+ 
Sbjct: 566 PTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVTERGKLVGIVEREDVA 620

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	369
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	100.0
3ddj_A	296	CBS domain-containing protein; structural genomics	100.0
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.97
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.97
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.97
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.96
3ddj_A	296	CBS domain-containing protein; structural genomics	99.96
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.95
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.94
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.93
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.92
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.91
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.89
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.87
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.87
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.87
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.87
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.86
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.86
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.85
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.85
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.85
4esy_A	170	CBS domain containing membrane protein; structural	99.84
4esy_A	170	CBS domain containing membrane protein; structural	99.84
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.83
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.82
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.82
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.82
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.82
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.81
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.81
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.81
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.81
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.81
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.81
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.81
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.81
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.81
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.8
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.8
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.8
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.8
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.79
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.79
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.79
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.79
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.78
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.78
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.78
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.78
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.77
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.77
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.77
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.76
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.75
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.75
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.74
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.74
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.73
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.73
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.73
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.73
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.73
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.73
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.73
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.73
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.72
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.72
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.72
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.72
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.72
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.72
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.71
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.71
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.71
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.7
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.7
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.7
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.7
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.7
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.69
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.69
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.69
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.68
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.68
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.68
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.67
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.67
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.67
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.66
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.66
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.66
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.66
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.66
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.64
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.64
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.64
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.63
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.63
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.63
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.61
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.6
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.6
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.58
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.56
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.52
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.51
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.51
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.5
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.5
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.49
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.49
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.48
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.47
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	99.47
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.43
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.38
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.36
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.36
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.33
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.31
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.29
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.21
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.21
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.13
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	99.12
3fio_A	70	A cystathionine beta-synthase domain protein fused	99.12
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.59
2pli_A	91	Uncharacterized protein; CORC-associated region, M	97.64
3llb_A	83	Uncharacterized protein; protein PA3983, unknown f	97.61
3lae_A	81	UPF0053 protein HI0107; APC85784.2, conserved prot	97.58
2pls_A	86	CBS domain protein; APC86064.2, CORC/HLYC transpor	97.51
2oai_A	94	Hemolysin; PFAM03471, xylella fastidiosa temecula1	97.47
2r2z_A	93	Hemolysin; APC85144, enterococcus faecalis V583, S	97.46
2p13_A	90	CBS domain; alpha-beta structure, structural genom	97.44
2p4p_A	86	Hypothetical protein HD1797; CORC_HLYC, PFAM: PF03	97.42
2o3g_A	92	Putative protein; APC85631.1, neisseria meningitid	97.41
2p3h_A	101	Uncharacterized CBS domain-containing protein; str	97.37
2rk5_A	87	Putative hemolysin; structural genomics, PSI-2, MC	97.32
2nqw_A	93	CBS domain protein; PFAM03471, hemolysins, CBS dom	97.29
3ded_A	113	Probable hemolysin; structural genomics, P protein	97.16

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=100.00  E-value=2.1e-33  Score=252.51  Aligned_cols=223  Identities=18%  Similarity=0.276  Sum_probs=188.5

Q ss_pred             CccCCcCEEEEEcC-CCcEEEEEeHHHHHHHHHh-------ccC------CCcccccccccccCCeEEeCCCcHHHHHHH
Q 017536            1 MAARRVDALLLTDS-NALLCGILTDKDIATRVIA-------REL------NLEETPVSKVMTRNPTFVLSDTLAVEALQK   66 (369)
Q Consensus         1 M~~~~~~~~~V~d~-~~~~~Givt~~Di~~~~~~-------~~~------~~~~~~v~dim~~~~i~v~~~~~l~~a~~~   66 (369)
                      |.+++++++||+|+ +|+++|++|.+||++.+..       ...      ...+.+++++|.++++++.+++++.+|++.
T Consensus        30 m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~a~~~  109 (280)
T 3kh5_A           30 MNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLIREKHERNFLAAINEPVREIMEENVITLKENADIDEAIET  109 (280)
T ss_dssp             HHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGGGHHHHTTSTTCHHHHTTSBGGGTSBCSCCCEETTCBHHHHHHH
T ss_pred             HHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccchhhhhhhccccchhHHhhhhHHHhcCCCCEEECCCCCHHHHHHH
Confidence            56789999999996 7899999999999854311       000      011468999999999999999999999999


Q ss_pred             HHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChhhHHHHHHHHhCCCCcc
Q 017536           67 MVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLS  145 (369)
Q Consensus        67 m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~  145 (369)
                      |.+++++++||+| +|+++|+++..|+++.....                                      .....+++
T Consensus       110 ~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~--------------------------------------~~~~~~v~  151 (280)
T 3kh5_A          110 FLTKNVGGAPIVNDENQLISLITERDVIRALLDK--------------------------------------IDENEVID  151 (280)
T ss_dssp             HHHTTCSEEEEECTTCBEEEEEEHHHHHHHHGGG--------------------------------------SCTTCBSG
T ss_pred             HHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHhhc--------------------------------------CCCCCCHH
Confidence            9999999999998 79999999999987652110                                      01224688


Q ss_pred             ccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCC-----------Cccccccccc
Q 017536          146 TIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNL-----------PADSTLVEKV  214 (369)
Q Consensus       146 ~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~-----------~~~~~~v~~~  214 (369)
                      ++|.  +++.++++++++.++++.|.+++++++||+++|+++|++|.+|++ +.+....           .....++.++
T Consensus       152 ~~m~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Givt~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~  228 (280)
T 3kh5_A          152 DYIT--RDVIVATPGERLKDVARTMVRNGFRRLPVVSEGRLVGIITSTDFI-KLLGSDWAFNHMQTGNVREITNVRMEEI  228 (280)
T ss_dssp             GGCB--CSCCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHH-HHHTSHHHHHHHHSCCTHHHHHCBHHHH
T ss_pred             HHhC--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHH-HHHhhhhhhhhhcccchhhhhCCcHHHH
Confidence            9998  578999999999999999999999999999999999999999998 4443211           0125689999


Q ss_pred             cccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHH
Q 017536          215 MTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (369)
Q Consensus       215 m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~  264 (369)
                      |.++++++++++++.+|++.|.+++++++||+|++|+++|+||..||+++
T Consensus       229 m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Givt~~dil~~  278 (280)
T 3kh5_A          229 MKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVLKY  278 (280)
T ss_dssp             SBSSCCCBCTTCBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHGGG
T ss_pred             hcCCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCeEEEEEeHHHHHHh
Confidence            99999999999999999999999999999999999999999999999874

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=100.00  E-value=2.7e-33  Score=254.03  Aligned_cols=226  Identities=20%  Similarity=0.215  Sum_probs=191.6

Q ss_pred             CccCCcCEEEEEcCCCcEEEEEeHHHHHHHHHhcc---------CCCcccccccccccCCeEEeCCCcHHHHHHHHHhCC
Q 017536            1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARE---------LNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGK   71 (369)
Q Consensus         1 M~~~~~~~~~V~d~~~~~~Givt~~Di~~~~~~~~---------~~~~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~   71 (369)
                      |.+++++++||+|  ++++|++|.+||++.+....         ......+++++|+++++++.+++++.+|++.|.+++
T Consensus        46 m~~~~~~~~~V~d--~~l~GivT~~Di~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~  123 (296)
T 3ddj_A           46 INEGGIGRIIVAN--EKIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRN  123 (296)
T ss_dssp             TTGGGCCEEEEES--SSEEEEEEHHHHHGGGTTCC---CCHHHHHHHHTSBGGGTSEESCCCEETTSCHHHHHHHHHHHT
T ss_pred             HHHCCCceEEEEC--CeEEEEEeHHHHHHHhcccccccccchhhHHHhcccHHHhccCCCEEEcCCCCHHHHHHHHHHcC
Confidence            7889999999998  89999999999985442111         012356899999999999999999999999999999


Q ss_pred             CeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccC
Q 017536           72 FRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPE  150 (369)
Q Consensus        72 ~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~  150 (369)
                      ++++||+| +|+++|+++..|++....                                       ......+++++|. 
T Consensus       124 ~~~lpVvd~~~~lvGivt~~dl~~~~~---------------------------------------~~~~~~~v~~~m~-  163 (296)
T 3ddj_A          124 FGSLPVVDINDKPVGIVTEREFLLLYK---------------------------------------DLDEIFPVKVFMS-  163 (296)
T ss_dssp             CSEEEEECTTSCEEEEEEHHHHGGGGG---------------------------------------GSCCCCBHHHHSB-
T ss_pred             CCEEEEEcCCCcEEEEEeHHHHHHhhh---------------------------------------cccccccHHHhhc-
Confidence            99999998 699999999999875310                                       0122346888887 


Q ss_pred             CCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcC-----CCccccccccccccCCceecC
Q 017536          151 KSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN-----LPADSTLVEKVMTPNPECATI  224 (369)
Q Consensus       151 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~-----~~~~~~~v~~~m~~~~~~v~~  224 (369)
                       ++++++++++++.++++.|.+++++++||++ +|+++|++|.+|+++.+....     ......++.++|.++++++++
T Consensus       164 -~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~  242 (296)
T 3ddj_A          164 -TKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDVMVTNLVTIDE  242 (296)
T ss_dssp             -CSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHHHSBCCCCBCCT
T ss_pred             -CCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHHHhhcChhhhcCcCHHHHhCCCCeEECC
Confidence             5789999999999999999999999999999 899999999999984433110     001256899999999999999


Q ss_pred             CCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHh
Q 017536          225 DTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  269 (369)
Q Consensus       225 ~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~  269 (369)
                      ++++.+|++.|.+++.+++||+|++|+++|+||..||++++....
T Consensus       243 ~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~Dil~~l~~~~  287 (296)
T 3ddj_A          243 LASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHIL  287 (296)
T ss_dssp             TSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEcHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999887665

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.97  E-value=2.5e-31  Score=244.00  Aligned_cols=231  Identities=16%  Similarity=0.178  Sum_probs=185.5

Q ss_pred             CccCCcCEEEEEcCCC-cEEEEEeHHHHHHHHHhc---cC---C---Cccc------ccccccccCCeEEeCCCcHHHHH
Q 017536            1 MAARRVDALLLTDSNA-LLCGILTDKDIATRVIAR---EL---N---LEET------PVSKVMTRNPTFVLSDTLAVEAL   64 (369)
Q Consensus         1 M~~~~~~~~~V~d~~~-~~~Givt~~Di~~~~~~~---~~---~---~~~~------~v~dim~~~~i~v~~~~~l~~a~   64 (369)
                      |.+++++++||+|+++ +++|++|.+|++..+...   ..   .   ....      ++.++|.++++++.+++++.+|+
T Consensus        58 m~~~~~~~~pV~d~~~~~lvGilt~~Dl~~~l~~~~~~~~~~~~l~~~~~~~v~~i~~~~~~~~~~~v~v~~~~~l~~a~  137 (323)
T 3t4n_C           58 LLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEAC  137 (323)
T ss_dssp             HHHTTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHCGGGGGGGGGCBHHHHHHHHHHTTC----CCCBCTTSBHHHHH
T ss_pred             HHHcCCceEEEEeCCCCeEEEEEEHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHhCCCCCCceEeCCCCcHHHHH
Confidence            5689999999999754 899999999999654321   00   0   1111      23345578999999999999999


Q ss_pred             HHHHhCCCeEeeEee-CCe-----EEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChhhHHHHHHHH
Q 017536           65 QKMVQGKFRHLPVVE-NGE-----VIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRER  138 (369)
Q Consensus        65 ~~m~~~~~~~lpVvd-~~~-----~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  138 (369)
                      +.|.+++++++||+| ++.     ++|+++..|++.........                                  ..
T Consensus       138 ~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~~~~~~----------------------------------~~  183 (323)
T 3t4n_C          138 LKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRE----------------------------------TH  183 (323)
T ss_dssp             HHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHHHCGG----------------------------------GG
T ss_pred             HHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHHHhcCCc----------------------------------hh
Confidence            999999999999998 453     99999999998764321100                                  11


Q ss_pred             hCCCCcccc---ccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCC-Ccccccccc
Q 017536          139 MFRPSLSTI---IPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL-PADSTLVEK  213 (369)
Q Consensus       139 ~~~~~v~~i---m~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~-~~~~~~v~~  213 (369)
                      ....+++++   |.  ++++++++++++.++++.|.+++++++||++ +|+++|++|.+|++ +.+.... .....++.+
T Consensus       184 ~~~~~v~~~~~~m~--~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~-~~~~~~~~~~~~~~v~~  260 (323)
T 3t4n_C          184 FLKIPIGDLNIITQ--DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVL-GLIKGGIYNDLSLSVGE  260 (323)
T ss_dssp             GCCSBGGGTTCSBC--TTCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETTHHH-HHHHTTHHHHTTSBHHH
T ss_pred             hhhCcHHHcCCCCC--CCcEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHH-HHHhhchhhhccCCHHH
Confidence            334578888   76  6799999999999999999999999999999 79999999999998 5544332 223568999


Q ss_pred             cccc------CCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHH
Q 017536          214 VMTP------NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (369)
Q Consensus       214 ~m~~------~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~  268 (369)
                      +|.+      +++++++++++.+|+++|.+++++++||+|++|+++|+||..||++++++.
T Consensus       261 ~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~l~Giit~~Dil~~l~~~  321 (323)
T 3t4n_C          261 ALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILLG  321 (323)
T ss_dssp             HGGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECTTSBEEEEEEHHHHHHHHHHC
T ss_pred             HHhhccccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECCCCcEEEEEEHHHHHHHHHhc
Confidence            9987      789999999999999999999999999999999999999999999988764

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.97  E-value=4.7e-31  Score=237.44  Aligned_cols=219  Identities=18%  Similarity=0.246  Sum_probs=174.7

Q ss_pred             CccCCcCEEEEEcCCCcEEEEEeHHHHHHHHHhccCCCcccccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-
Q 017536            1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-   79 (369)
Q Consensus         1 M~~~~~~~~~V~d~~~~~~Givt~~Di~~~~~~~~~~~~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-   79 (369)
                      |.+++++++||+|++|+++|++|.+|+++.       +.+.+++++|.++++++++++++.+|++.|.+++++.+||+| 
T Consensus        27 ~~~~~~~~~pV~d~~~~~~Giv~~~dl~~~-------~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~   99 (282)
T 2yzq_A           27 FKKYKVRSFPVVNKEGKLVGIISVKRILVN-------PDEEQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDS   99 (282)
T ss_dssp             -----CCEEEEECTTCCEEEEEESSCC-----------------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             HHHcCCCeEEEEcCCCcEEEEEEHHHHHhh-------hccCCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC
Confidence            567899999999988999999999999843       235789999999899999999999999999999999999999 


Q ss_pred             CCeEEEEEehHHHHH-HHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeC
Q 017536           80 NGEVIALLDIAKCLY-DAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTIS  158 (369)
Q Consensus        80 ~~~~vGiv~~~dil~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~  158 (369)
                      +|+++|+++..|+++ .....                                     ......+++++|.  .++++++
T Consensus       100 ~~~~~Giit~~di~~~~~~~~-------------------------------------~~~~~~~v~~~m~--~~~~~v~  140 (282)
T 2yzq_A          100 KGKPVGILTVGDIIRRYFAKS-------------------------------------EKYKGVEIEPYYQ--RYVSIVW  140 (282)
T ss_dssp             TSCEEEEEEHHHHHHHTTTTC-------------------------------------SGGGGCBSTTTSB--SCCCCEE
T ss_pred             CCEEEEEEEHHHHHHHHHhcc-------------------------------------CCcccCcHHHHhC--CCCEEEC
Confidence            589999999999876 31100                                     0011346788997  6788999


Q ss_pred             CCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH------HHHH------hc-----------------CCCccc
Q 017536          159 PTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL------MRVI------SQ-----------------NLPADS  208 (369)
Q Consensus       159 ~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll------~~~~------~~-----------------~~~~~~  208 (369)
                      +++++.++++.|.+++++++||++ +|+++|++|.+|++      +.+.      ..                 ......
T Consensus       141 ~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (282)
T 2yzq_A          141 EGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPN  220 (282)
T ss_dssp             TTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC--------------------------------CC
T ss_pred             CCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHhhhhhhhhhhccchhhhhhhhhhhcccchHHHHhHhhhhhcc
Confidence            999999999999999999999998 88999999999997      2221      00                 011135


Q ss_pred             cccccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHH
Q 017536          209 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (369)
Q Consensus       209 ~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~  265 (369)
                      .+++++|+++++++++++++.+|+++|.+++++++||+|++|+++|+||..||++++
T Consensus       221 ~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGiit~~Dil~~~  277 (282)
T 2yzq_A          221 KPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVL  277 (282)
T ss_dssp             CBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGG
T ss_pred             CCHHHhcCCCCceeCCCCCHHHHHHHHHHcCcceeEEECCCCCEEEEEeHHHHHHHH
Confidence            789999999999999999999999999999999999999888999999999999744

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.97  E-value=2e-29  Score=232.41  Aligned_cols=232  Identities=16%  Similarity=0.176  Sum_probs=185.9

Q ss_pred             CccCCcCEEEEEcCC-CcEEEEEeHHHHHHHHHhccC---CCc------cccccc-------ccccCC--eEEeCCCcHH
Q 017536            1 MAARRVDALLLTDSN-ALLCGILTDKDIATRVIAREL---NLE------ETPVSK-------VMTRNP--TFVLSDTLAV   61 (369)
Q Consensus         1 M~~~~~~~~~V~d~~-~~~~Givt~~Di~~~~~~~~~---~~~------~~~v~d-------im~~~~--i~v~~~~~l~   61 (369)
                      |.+++++++||+|++ ++++|++|.+|+++.+.....   ...      ..++..       +|.+++  +++.+++++.
T Consensus        50 ~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~im~~~~~~~~v~~~~~~~  129 (334)
T 2qrd_G           50 LTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLM  129 (334)
T ss_dssp             HHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGGGGGGGGSCBHHHHHHHHHHHTCSCSSCCCBCTTSBHH
T ss_pred             HHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHHHHHhhccCCccHHHHHhhhchhhHHHHHHhhccCCCceeeeCCCCcHH
Confidence            457889999999976 799999999999854432100   111      233333       366667  9999999999


Q ss_pred             HHHHHHHhCCCeEeeEee-CC-e----EEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChhhHHHHH
Q 017536           62 EALQKMVQGKFRHLPVVE-NG-E----VIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETL  135 (369)
Q Consensus        62 ~a~~~m~~~~~~~lpVvd-~~-~----~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  135 (369)
                      +|++.|.+++++++||+| ++ +    ++|+++..|++........                                  
T Consensus       130 ~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~~~~----------------------------------  175 (334)
T 2qrd_G          130 DACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCK----------------------------------  175 (334)
T ss_dssp             HHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHHHCG----------------------------------
T ss_pred             HHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHhhcc----------------------------------
Confidence            999999999999999998 43 4    9999999999876332100                                  


Q ss_pred             HHHhCCCCccc---cccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCC-Cccccc
Q 017536          136 RERMFRPSLST---IIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL-PADSTL  210 (369)
Q Consensus       136 ~~~~~~~~v~~---im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~-~~~~~~  210 (369)
                      .......++++   +|.  +++.++++++++.++++.|.+++++++||++ +|+++|++|.+|++ +.+..+. .....+
T Consensus       176 ~~~~~~~~v~~l~~~m~--~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~-~~~~~~~~~~~~~~  252 (334)
T 2qrd_G          176 ETAMLRVPLNQMTIGTW--SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVM-HLIQDGDYSNLDLS  252 (334)
T ss_dssp             GGGGCCCBGGGSSCSBC--SSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETHHHH-HHHTTSCGGGGGSB
T ss_pred             chhhhhCcHHHhCCccc--CCceEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHH-HHhhccccccccCc
Confidence            00123456777   476  6789999999999999999999999999999 78999999999998 5554432 233578


Q ss_pred             ccccccc------CCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHh
Q 017536          211 VEKVMTP------NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  269 (369)
Q Consensus       211 v~~~m~~------~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~  269 (369)
                      +.++|.+      +++++++++++.+|++.|.+++++++||+|++|+++|+||..||++++....
T Consensus       253 v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~Giit~~dil~~~~~~~  317 (334)
T 2qrd_G          253 VGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYDK  317 (334)
T ss_dssp             HHHHHTTCCTTCCCCCEECTTCBHHHHHHHHHHSCCCEEEEECTTCBEEEEEEHHHHHHHHHSCC
T ss_pred             HHHHHhcccccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHHhcc
Confidence            9999984      8899999999999999999999999999999999999999999999887554

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.96  E-value=6.6e-29  Score=228.62  Aligned_cols=235  Identities=18%  Similarity=0.221  Sum_probs=184.0

Q ss_pred             CccCCcCEEEEEcCC-CcEEEEEeHHHHHHHHHhcc-------CCCcccc-------cccccccCCeEEeCCCcHHHHHH
Q 017536            1 MAARRVDALLLTDSN-ALLCGILTDKDIATRVIARE-------LNLEETP-------VSKVMTRNPTFVLSDTLAVEALQ   65 (369)
Q Consensus         1 M~~~~~~~~~V~d~~-~~~~Givt~~Di~~~~~~~~-------~~~~~~~-------v~dim~~~~i~v~~~~~l~~a~~   65 (369)
                      |.+++++++||+|++ ++++|++|.+|+++.+....       ..+...+       +.++|.++++++.+++++.+|++
T Consensus        63 ~~~~~~~~~pV~d~~~~~~vGivt~~Dll~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~im~~~~~~v~~~~~~~~a~~  142 (330)
T 2v8q_E           63 LVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVS  142 (330)
T ss_dssp             HHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGGCBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHH
T ss_pred             HHHcCCcEEEEEeCCCCeEEEEEEHHHHHHHHHHHHhccccchhHHhhccHHHHHHHHhhcccCCceEeCCCCCHHHHHH
Confidence            457899999999977 68999999999986543211       1111222       34678999999999999999999


Q ss_pred             HHHhCCCeEeeEee--CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChhhHHHHHHHHhCCCC
Q 017536           66 KMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPS  143 (369)
Q Consensus        66 ~m~~~~~~~lpVvd--~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  143 (369)
                      .|.+++++++||+|  +|+++|+++..|+++.......                     .. ... .        ....+
T Consensus       143 ~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~~~---------------------~~-~~~-~--------~~~~~  191 (330)
T 2v8q_E          143 SLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFIT---------------------EF-PKP-E--------FMSKS  191 (330)
T ss_dssp             HHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHSC---------------------SS-SCC-G--------GGGSB
T ss_pred             HHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHHhh---------------------cc-Cch-h--------hhcCC
Confidence            99999999999998  5899999999999875321100                     00 000 0        01123


Q ss_pred             cccc--ccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcC-CCcccccccccc----
Q 017536          144 LSTI--IPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN-LPADSTLVEKVM----  215 (369)
Q Consensus       144 v~~i--m~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~-~~~~~~~v~~~m----  215 (369)
                      ++++  |. ..+++++++++++.++++.|.+++++++||++ +|+++|++|.+|++ +..... ......++.++|    
T Consensus       192 v~~~~v~~-~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~l~Giit~~dl~-~~~~~~~~~~~~~~v~~~~~~~~  269 (330)
T 2v8q_E          192 LEELQIGT-YANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVI-NLAAEKTYNNLDVSVTKALQHRS  269 (330)
T ss_dssp             HHHHTCSB-CSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTG-GGGGSSCCCCCSSBHHHHGGGCC
T ss_pred             HHHhcccC-cCCceEECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEHHHHH-HHHhccccccccCcHHHHHhccc
Confidence            3343  32 14688999999999999999999999999999 89999999999997 444322 222256788888    


Q ss_pred             --ccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHH
Q 017536          216 --TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (369)
Q Consensus       216 --~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~  268 (369)
                        .++++++++++++.+|++.|.+++++++||+|++|+++|+||..||++++...
T Consensus       270 ~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~l~Giit~~Dil~~~~~~  324 (330)
T 2v8q_E          270 HYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVLT  324 (330)
T ss_dssp             SCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHSS
T ss_pred             cccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhh
Confidence              47899999999999999999999999999999999999999999999977643

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.96  E-value=6.1e-29  Score=225.32  Aligned_cols=199  Identities=20%  Similarity=0.266  Sum_probs=167.7

Q ss_pred             cCCCcccccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHH
Q 017536           35 ELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV  114 (369)
Q Consensus        35 ~~~~~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~  114 (369)
                      +.+....+|+|+|+++++++++++++.+|++.|.+++++++||++ |+++|++|..|++........             
T Consensus        14 ~~~~~~~~V~dim~~~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d-~~l~GivT~~Di~~~~~~~~~-------------   79 (296)
T 3ddj_A           14 NLYFQGMNIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVAN-EKIEGLLTTRDLLSTVESYCK-------------   79 (296)
T ss_dssp             CCTTCCSSGGGTCEESCCEECTTSBHHHHHHHTTGGGCCEEEEES-SSEEEEEEHHHHHGGGTTCC--------------
T ss_pred             hhhhcccCHHHhccCCCcEECCCccHHHHHHHHHHCCCceEEEEC-CeEEEEEeHHHHHHHhccccc-------------
Confidence            445667899999999999999999999999999999999999999 999999999999865221000             


Q ss_pred             HhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehH
Q 017536          115 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSK  193 (369)
Q Consensus       115 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~  193 (369)
                                   ...+...+.. ....+++++|.  ++++++++++++.++++.|.+++++++||++ +++++|++|.+
T Consensus        80 -------------~~~~~~~~~~-~~~~~v~~im~--~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~lvGivt~~  143 (296)
T 3ddj_A           80 -------------DSCSQGDLYH-ISTTPIIDYMT--PNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTER  143 (296)
T ss_dssp             ---------------CCHHHHHH-HHTSBGGGTSE--ESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHH
T ss_pred             -------------ccccchhhHH-HhcccHHHhcc--CCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHH
Confidence                         0011111111 23567999998  5788999999999999999999999999998 88999999999


Q ss_pred             HHHHHHHhcCCCccccccccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHH
Q 017536          194 DILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (369)
Q Consensus       194 dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~  266 (369)
                      |++ +.+.....  ..++.++|.++++++++++++.++++.|.+++.+++||+|++|+++|+||..|+++++.
T Consensus       144 dl~-~~~~~~~~--~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~  213 (296)
T 3ddj_A          144 EFL-LLYKDLDE--IFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLA  213 (296)
T ss_dssp             HHG-GGGGGSCC--CCBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             HHH-Hhhhcccc--cccHHHhhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHH
Confidence            997 54443322  46899999999999999999999999999999999999999999999999999998665

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.95  E-value=4.6e-27  Score=210.99  Aligned_cols=194  Identities=19%  Similarity=0.288  Sum_probs=158.0

Q ss_pred             ccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee--CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhc
Q 017536           44 SKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHW  121 (369)
Q Consensus        44 ~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (369)
                      ..+|+++++++++++|+.+|+++|.+++++++||+|  +|+++|++|..|++........         ...+   ....
T Consensus         7 ~~i~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~---------~~~~---~~~~   74 (280)
T 3kh5_A            7 KIAQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSK---------YNLI---REKH   74 (280)
T ss_dssp             GTSCCSCCCCBCTTSBHHHHHHHHHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGG---------GHHH---HTTS
T ss_pred             HHhcCCCcEEECCCCcHHHHHHHHHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccch---------hhhh---hhcc
Confidence            446778999999999999999999999999999998  5999999999999875311000         0000   0000


Q ss_pred             CCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHH
Q 017536          122 GTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVI  200 (369)
Q Consensus       122 g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~  200 (369)
                                ...+. .....+++++|.  ++++++++++++.++++.|.+++++++||++ +|+++|++|.+|++ +.+
T Consensus        75 ----------~~~~~-~~~~~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~-~~~  140 (280)
T 3kh5_A           75 ----------ERNFL-AAINEPVREIME--ENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVI-RAL  140 (280)
T ss_dssp             ----------TTCHH-HHTTSBGGGTSB--CSCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHH-HHH
T ss_pred             ----------ccchh-HHhhhhHHHhcC--CCCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHH-HHH
Confidence                      00011 122567999999  5789999999999999999999999999998 89999999999998 555


Q ss_pred             hcCCCccccccccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHH
Q 017536          201 SQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (369)
Q Consensus       201 ~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~  265 (369)
                      ...... ..++.++|.++++++++++++.++++.|.+++.+++||+ ++|+++|+||..|+++++
T Consensus       141 ~~~~~~-~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~~~~Givt~~dl~~~~  203 (280)
T 3kh5_A          141 LDKIDE-NEVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVV-SEGRLVGIITSTDFIKLL  203 (280)
T ss_dssp             GGGSCT-TCBSGGGCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEE-ETTEEEEEEEHHHHHHHH
T ss_pred             hhcCCC-CCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEE-ECCEEEEEEEHHHHHHHH
Confidence            443332 458999999999999999999999999999999999999 689999999999999865

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.94  E-value=9.7e-27  Score=209.20  Aligned_cols=178  Identities=27%  Similarity=0.378  Sum_probs=140.5

Q ss_pred             cccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHH
Q 017536           41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK  119 (369)
Q Consensus        41 ~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (369)
                      ++++++|+++++++++++++.+|++.|.+++++++||+| +|+++|+++..|++..                        
T Consensus         1 m~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~~~~~~Giv~~~dl~~~------------------------   56 (282)
T 2yzq_A            1 MRVKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVN------------------------   56 (282)
T ss_dssp             CBHHHHSEESCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC---------------------------
T ss_pred             CchHHhccCCCeEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhh------------------------
Confidence            368899999999999999999999999999999999999 7999999999998743                        


Q ss_pred             hcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHH
Q 017536          120 HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMR  198 (369)
Q Consensus       120 ~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~  198 (369)
                                         ....+++++|.  ++++++++++++.++++.|.+++.+++||++ +|+++|++|.+|++++
T Consensus        57 -------------------~~~~~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~  115 (282)
T 2yzq_A           57 -------------------PDEEQLAMLVK--RDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRR  115 (282)
T ss_dssp             --------------------------CCCB--SCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             -------------------hccCCHHHHcC--CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHH
Confidence                               11245788998  4688999999999999999999999999999 7899999999999831


Q ss_pred             HHhcCCCccccccccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          199 VISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       199 ~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      .+.........++.++|.++++++++++++.++++.|.+++++++||+|++|+++|+||..|+++
T Consensus       116 ~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~~Giit~~dl~~  180 (282)
T 2yzq_A          116 YFAKSEKYKGVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLR  180 (282)
T ss_dssp             TTTTCSGGGGCBSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGG
T ss_pred             HHhccCCcccCcHHHHhCCCCEEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHhh
Confidence            55432222356889999999999999999999999999999999999999999999999999984

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.93  E-value=7.6e-25  Score=200.78  Aligned_cols=205  Identities=17%  Similarity=0.242  Sum_probs=156.5

Q ss_pred             ccccccccccc--CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-C-CeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHH
Q 017536           39 EETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV  114 (369)
Q Consensus        39 ~~~~v~dim~~--~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~-~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~  114 (369)
                      ...++.|+|.+  ++++++.++|+.+|++.|.+++++++||+| + ++++|+++..|++..+....... ..       .
T Consensus        28 ~~~~~~d~m~~~~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~~~~~lvGilt~~Dl~~~l~~~~~~~-~~-------~   99 (323)
T 3t4n_C           28 NSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSNP-DK-------F   99 (323)
T ss_dssp             HHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHTTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHCG-GG-------G
T ss_pred             HhCchHhhCCCCCcEEEEcCCCcHHHHHHHHHHcCCceEEEEeCCCCeEEEEEEHHHHHHHHHHHHcCc-ch-------h
Confidence            56789999984  578999999999999999999999999998 3 59999999999987654322110 00       0


Q ss_pred             HhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCE-----EEE
Q 017536          115 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENK-----PRG  188 (369)
Q Consensus       115 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~-----~~G  188 (369)
                      ..+..          .....+.+.+   ++.++|.  ++++++++++++.+|++.|.+++++++||++ ++.     ++|
T Consensus       100 ~~l~~----------~~~~~v~~i~---~~~~~~~--~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~G  164 (323)
T 3t4n_C          100 ELVDK----------LQLDGLKDIE---RALGVDQ--LDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVS  164 (323)
T ss_dssp             GGGGG----------CBHHHHHHHH---HHTTC------CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEE
T ss_pred             HHHHH----------HHHHHHHHHH---HHhCCCC--CCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEE
Confidence            00000          0011112211   1334555  6788999999999999999999999999999 553     999


Q ss_pred             EeehHHHHHHHHhcC--CCccccccccc---cccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          189 ILTSKDILMRVISQN--LPADSTLVEKV---MTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       189 iit~~dll~~~~~~~--~~~~~~~v~~~---m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      ++|.+|+++.+....  ......++.++   |.++++++++++++.+|++.|.+++++++||+|++|+++|+||..|+++
T Consensus       165 ivt~~di~~~l~~~~~~~~~~~~~v~~~~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  244 (323)
T 3t4n_C          165 VLTQYRILKFVALNCRETHFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLG  244 (323)
T ss_dssp             EEEHHHHHHHHHHHCGGGGGCCSBGGGTTCSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETTHHHH
T ss_pred             EecHHHHHHHHHhcCCchhhhhCcHHHcCCCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHH
Confidence            999999984433221  11224689999   8889999999999999999999999999999999999999999999998


Q ss_pred             HHH
Q 017536          264 AAV  266 (369)
Q Consensus       264 ~~~  266 (369)
                      ++.
T Consensus       245 ~~~  247 (323)
T 3t4n_C          245 LIK  247 (323)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            654

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.92  E-value=3.8e-24  Score=196.79  Aligned_cols=203  Identities=21%  Similarity=0.201  Sum_probs=156.4

Q ss_pred             ccccccccc--ccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-C-CeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHH
Q 017536           39 EETPVSKVM--TRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV  114 (369)
Q Consensus        39 ~~~~v~dim--~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~-~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~  114 (369)
                      .+.+++|+|  .++++++++++++.+|++.|.+++++++||++ + ++++|+++..|++..+..........        
T Consensus        33 ~~~~v~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dll~~l~~~~~~~~~~--------  104 (330)
T 2v8q_E           33 KSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQ--------  104 (330)
T ss_dssp             HHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTT--------
T ss_pred             HcCcHhhhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCCCeEEEEEEHHHHHHHHHHHHhccccc--------
Confidence            357899999  78899999999999999999999999999998 4 78999999999987644322110000        


Q ss_pred             HhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe--CCEEEEEeeh
Q 017536          115 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTS  192 (369)
Q Consensus       115 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d--~~~~~Giit~  192 (369)
                            .. . ..... ...+..     +++++|.  ++++++++++++.++++.|.+++++++||++  +|+++|++|.
T Consensus       105 ------~~-~-l~~~~-~~~~~~-----~~~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~  168 (330)
T 2v8q_E          105 ------IY-E-LEEHK-IETWRE-----VYLQDSF--KPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTH  168 (330)
T ss_dssp             ------CC-C-GGGCB-HHHHHH-----HHSSSSC--CCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECH
T ss_pred             ------hh-H-Hhhcc-HHHHHH-----HHhhccc--CCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcH
Confidence                  00 0 00000 111111     2457787  6799999999999999999999999999998  6899999999


Q ss_pred             HHHHHHHHhcCCC-----ccccccccc--cc-cCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHH
Q 017536          193 KDILMRVISQNLP-----ADSTLVEKV--MT-PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (369)
Q Consensus       193 ~dll~~~~~~~~~-----~~~~~v~~~--m~-~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~  264 (369)
                      +|+++.+......     ....++.++  |. ++++++++++++.++++.|.+++.+++||+|++|+++|+||..|++++
T Consensus       169 ~dl~~~~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~l~Giit~~dl~~~  248 (330)
T 2v8q_E          169 KRILKFLKLFITEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINL  248 (330)
T ss_dssp             HHHHHHHHHHSCSSSCCGGGGSBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGG
T ss_pred             HHHHHHHHHHhhccCchhhhcCCHHHhcccCcCCceEECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEHHHHHHH
Confidence            9998433322111     112345554  54 788999999999999999999999999999999999999999999974


Q ss_pred             H
Q 017536          265 A  265 (369)
Q Consensus       265 ~  265 (369)
                      .
T Consensus       249 ~  249 (330)
T 2v8q_E          249 A  249 (330)
T ss_dssp             G
T ss_pred             H
Confidence            3

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.91  E-value=1.3e-23  Score=193.43  Aligned_cols=207  Identities=14%  Similarity=0.178  Sum_probs=155.3

Q ss_pred             cccccccccc--CCeEEeCCCcHHHHHHHHHhCCCeEeeEeeC--CeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 017536           40 ETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE  115 (369)
Q Consensus        40 ~~~v~dim~~--~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~  115 (369)
                      ..+++++|++  +++++++++++.+|++.|.+++++++||+++  ++++|+++.+|++........... ...    .+.
T Consensus        21 ~~~v~dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~~~~~~~~~-~~~----~~~   95 (334)
T 2qrd_G           21 SRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSS-FPE----AIA   95 (334)
T ss_dssp             HSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCS-CGG----GGG
T ss_pred             cCchhhhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHHHHHhhccC-Ccc----HHH
Confidence            5799999975  5789999999999999999999999999984  799999999999876433211000 000    000


Q ss_pred             hHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-C-CE----EEEE
Q 017536          116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NK----PRGI  189 (369)
Q Consensus       116 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~-~~----~~Gi  189 (369)
                      ...          ......+.+..     +++|.+..+++++++++++.++++.|.+++.+++||++ + ++    ++|+
T Consensus        96 ~~~----------~~~~~~i~~~l-----~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Gi  160 (334)
T 2qrd_G           96 EID----------KFRLLGLREVE-----RKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSV  160 (334)
T ss_dssp             GGG----------SCBHHHHHHHH-----HHHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEE
T ss_pred             HHh----------hhchhhHHHHH-----HhhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEE
Confidence            000          00011122111     34565323348999999999999999999999999998 4 44    9999


Q ss_pred             eehHHHHHHHHhcC--CCcccccccc---ccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHH
Q 017536          190 LTSKDILMRVISQN--LPADSTLVEK---VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (369)
Q Consensus       190 it~~dll~~~~~~~--~~~~~~~v~~---~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~  264 (369)
                      +|.+|+++.+....  ......++.+   +|.++++++++++++.+|++.|.+++.+++||+|++|+++|+||..|++++
T Consensus       161 vt~~dl~~~~~~~~~~~~~~~~~v~~l~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~~~  240 (334)
T 2qrd_G          161 LTQYRILKFISMNCKETAMLRVPLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHL  240 (334)
T ss_dssp             EEHHHHHHHHHHHCGGGGGCCCBGGGSSCSBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETHHHHHH
T ss_pred             eeHHHHHHHHHhhccchhhhhCcHHHhCCcccCCceEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHHHH
Confidence            99999984433211  1112457888   588899999999999999999999999999999999999999999999986


Q ss_pred             HH
Q 017536          265 AV  266 (369)
Q Consensus       265 ~~  266 (369)
                      +.
T Consensus       241 ~~  242 (334)
T 2qrd_G          241 IQ  242 (334)
T ss_dssp             HT
T ss_pred             hh
Confidence            54

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.89  E-value=1.8e-22  Score=164.86  Aligned_cols=130  Identities=19%  Similarity=0.238  Sum_probs=113.5

Q ss_pred             CCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCc---cccccccccc
Q 017536          141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPA---DSTLVEKVMT  216 (369)
Q Consensus       141 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~---~~~~v~~~m~  216 (369)
                      ..+++++|+|+.+++++++++|+.+|++.|.+++++++||++ +++++|++|.+|+++.+.......   ...++.++|.
T Consensus        14 ~~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~~~~~~~~~~~~v~~im~   93 (156)
T 3k6e_A           14 LGQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDLSQEIMADTDIVHMTK   93 (156)
T ss_dssp             HTTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTCCHHHHTTSBGGGTCB
T ss_pred             hccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhcccccccccccCHHHhhc
Confidence            346899999999999999999999999999999999999998 799999999999985554433221   2568999999


Q ss_pred             cCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHhcCC
Q 017536          217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNT  272 (369)
Q Consensus       217 ~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~~~~  272 (369)
                      ++++++++++++.+|++.|.+++  .+||||++|+++|+||..||++++.+.+.+.
T Consensus        94 ~~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~~g~l~GiiT~~Dil~~~~~~~~~~  147 (156)
T 3k6e_A           94 TDVAVVSPDFTITEVLHKLVDES--FLPVVDAEGIFQGIITRKSILKAVNALLHDF  147 (156)
T ss_dssp             CSCCCBCTTCCHHHHHHHTTTSS--EEEEECTTSBEEEEEEHHHHHHHHHHHSCC-
T ss_pred             CCceecccccHHHHHHHHHHHcC--CeEEEecCCEEEEEEEHHHHHHHHHHHhccc
Confidence            99999999999999999998876  4999999999999999999999998777553

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.87  E-value=2.9e-22  Score=158.61  Aligned_cols=126  Identities=17%  Similarity=0.186  Sum_probs=111.1

Q ss_pred             CCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe--CCEEEEEeehHHHHHHHHhcCCCccccccccccccCC
Q 017536          142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  219 (369)
Q Consensus       142 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d--~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~  219 (369)
                      .+++++|+|+.+++++++++++.+|++.|.+++++++||++  +++++|++|.+|++ +....+......++.++| +++
T Consensus         2 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~-~~~~~~~~~~~~~v~~~m-~~~   79 (130)
T 3hf7_A            2 VSVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAY-RLMTEKKEFTKEIMLRAA-DEI   79 (130)
T ss_dssp             CBHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHH-HHHTSSSCCCHHHHHHHS-BCC
T ss_pred             cCHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHH-HHHhccCccchhhHHHhc-cCC
Confidence            35889998767899999999999999999999999999996  47999999999997 555544333356789999 788


Q ss_pred             ceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHh
Q 017536          220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  269 (369)
Q Consensus       220 ~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~  269 (369)
                      +++++++++.+|++.|.+++.+++||+|++|+++|+||..|+++++++++
T Consensus        80 ~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~g~i  129 (130)
T 3hf7_A           80 YFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDF  129 (130)
T ss_dssp             CEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHHHC--
T ss_pred             eEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999988765

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.87  E-value=1e-21  Score=163.26  Aligned_cols=130  Identities=14%  Similarity=0.123  Sum_probs=113.7

Q ss_pred             hCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-C-CEEEEEeehHHHHHHHHhcCCCccccccccccc
Q 017536          139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMT  216 (369)
Q Consensus       139 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~-~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~  216 (369)
                      +...+++++|+|+.+++++++++++.+|++.|.+++++++||++ + ++++|++|.+|++ +......   ..++.++| 
T Consensus        39 l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~-~~~~~~~---~~~v~~im-  113 (172)
T 3lhh_A           39 LDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLL-SESIAGE---RLELVDLV-  113 (172)
T ss_dssp             ----CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHH-HHHHTTC---CCCGGGGC-
T ss_pred             cCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHH-HHHhhcC---cccHHHHh-
Confidence            45678999999877899999999999999999999999999999 5 8999999999998 4444332   56899999 


Q ss_pred             cCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHhcCCC
Q 017536          217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTA  273 (369)
Q Consensus       217 ~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~~~~~  273 (369)
                      ++++++++++++.+|++.|.+++.+++||+|++|+++|+||..||++++++++.++.
T Consensus       114 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l~~~~~de~  170 (172)
T 3lhh_A          114 KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDALTGEFFQED  170 (172)
T ss_dssp             BCCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHTTCC---
T ss_pred             cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHHhCCCcccc
Confidence            999999999999999999999999999999999999999999999999999887654

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.87  E-value=2.2e-22  Score=160.61  Aligned_cols=130  Identities=18%  Similarity=0.208  Sum_probs=108.5

Q ss_pred             CCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-C-CEEEEEeehHHHHHHHHhcCCCccccccccccccCC
Q 017536          142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  219 (369)
Q Consensus       142 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~-~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~  219 (369)
                      .+++++|+|+.+++++++++++.+|++.|.+++++++||++ + ++++|++|.+|++ +.+.... ....++.++|. ++
T Consensus         3 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~-~~~~~~~-~~~~~v~~~m~-~~   79 (136)
T 3lfr_A            3 LQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLL-PLILKAD-GDSDDVKKLLR-PA   79 (136)
T ss_dssp             CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGG-GGGGSSS-GGGCCGGGTCB-CC
T ss_pred             CChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHH-HHHHhcc-CCCcCHHHHcC-CC
Confidence            46889999777899999999999999999999999999999 5 7999999999997 4443222 23678999995 48


Q ss_pred             ceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHhcCCCC
Q 017536          220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAG  274 (369)
Q Consensus       220 ~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~~~~~~  274 (369)
                      +++++++++.+|++.|.+++.+++||+|++|+++|+||..|+++++++++.++.+
T Consensus        80 ~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~~~~~de~~  134 (136)
T 3lfr_A           80 TFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQIVGDIEDEHD  134 (136)
T ss_dssp             CEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC---------
T ss_pred             eEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCCCcCccc
Confidence            9999999999999999999999999999999999999999999999988866543

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.87  E-value=1.9e-21  Score=157.49  Aligned_cols=126  Identities=18%  Similarity=0.211  Sum_probs=114.1

Q ss_pred             hCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-C-CEEEEEeehHHHHHHHHhcCCCccccccccccc
Q 017536          139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMT  216 (369)
Q Consensus       139 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~-~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~  216 (369)
                      +...+++++|+++.+++++++++++.+|++.|.+++++++||++ + |+++|++|.+|+++.+....    ..++.++| 
T Consensus        20 l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~----~~~v~~~m-   94 (148)
T 3lv9_A           20 FEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINEN----KIELEEIL-   94 (148)
T ss_dssp             GGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS----CCCGGGTC-
T ss_pred             cCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcCC----CccHHHhc-
Confidence            45678999999766899999999999999999999999999999 5 89999999999984443332    56899999 


Q ss_pred             cCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHh
Q 017536          217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  269 (369)
Q Consensus       217 ~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~  269 (369)
                      ++++++++++++.+|++.|.+++.+++||+|++|+++|+||..|+++++++++
T Consensus        95 ~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~~i  147 (148)
T 3lv9_A           95 RDIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILEEIVGEI  147 (148)
T ss_dssp             BCCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHHHHHHTC
T ss_pred             CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCcC
Confidence            89999999999999999999999999999999999999999999999998865

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.86  E-value=1.1e-21  Score=155.30  Aligned_cols=125  Identities=15%  Similarity=0.178  Sum_probs=109.6

Q ss_pred             hCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-C-CEEEEEeehHHHHHHHHhcCCCccccccccccc
Q 017536          139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMT  216 (369)
Q Consensus       139 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~-~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~  216 (369)
                      +...+++++|+++..++++++++++.+|++.|.+++++++||++ + ++++|++|.+|++ +....+..  ..++.++| 
T Consensus         3 l~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~-~~~~~~~~--~~~v~~~m-   78 (130)
T 3i8n_A            3 AQDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELF-KMQQSGSG--QKQLGAVM-   78 (130)
T ss_dssp             ----CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHH-HHHHTTTT--TSBHHHHS-
T ss_pred             cCcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHH-HHHhcCCC--cCCHHHHh-
Confidence            34567999999877788999999999999999999999999998 5 8999999999998 54443332  57899999 


Q ss_pred             cCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHH
Q 017536          217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (369)
Q Consensus       217 ~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~  267 (369)
                      ++++++++++++.+|++.|.+++.+++||+|++|+++|+||..|+++++++
T Consensus        79 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l~g  129 (130)
T 3i8n_A           79 RPIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHLVG  129 (130)
T ss_dssp             EECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHHHT
T ss_pred             cCCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHHcC
Confidence            578999999999999999999999999999999999999999999998875

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.86  E-value=2.1e-21  Score=153.40  Aligned_cols=123  Identities=15%  Similarity=0.186  Sum_probs=109.8

Q ss_pred             CCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-C-CEEEEEeehHHHHHHHHhcCCCccccccccccccC
Q 017536          141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN  218 (369)
Q Consensus       141 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~-~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~  218 (369)
                      ..+++++|+|+.+++++++++++.+|++.|.+++++++||++ + ++++|++|.+|++ +....    ...++.++|. +
T Consensus         4 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~-~~~~~----~~~~v~~~m~-~   77 (129)
T 3jtf_A            4 ERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLL-RYMLE----PALDIRSLVR-P   77 (129)
T ss_dssp             CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGG-GGGTC----TTSCGGGGCB-C
T ss_pred             CCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHH-hHhcc----CCcCHHHHhC-C
Confidence            457899999877889999999999999999999999999998 4 8999999999997 44332    2568999994 6


Q ss_pred             CceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHh
Q 017536          219 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  269 (369)
Q Consensus       219 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~  269 (369)
                      ++++++++++.+|++.|.+++.+++||+|++|+++|+||..|+++++++++
T Consensus        78 ~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l~gei  128 (129)
T 3jtf_A           78 AVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIVGDI  128 (129)
T ss_dssp             CCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHHHHTC
T ss_pred             CeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCCC
Confidence            899999999999999999999999999999999999999999999998865

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.85  E-value=2.2e-21  Score=157.99  Aligned_cols=131  Identities=15%  Similarity=0.164  Sum_probs=111.7

Q ss_pred             hCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEE-e--CCEEEEEeehHHHHHHHHhcCCCcccccccccc
Q 017536          139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVT-V--ENKPRGILTSKDILMRVISQNLPADSTLVEKVM  215 (369)
Q Consensus       139 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~-d--~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m  215 (369)
                      +...+++++|+++.+++++++++++.+|++.|.+++++++||+ +  +|+++|++|.+|+++.+....    ..++.++|
T Consensus        17 l~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~~----~~~v~~~m   92 (153)
T 3oco_A           17 MNDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARIDD----KAKISTIM   92 (153)
T ss_dssp             HHHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHHT----TSBGGGTC
T ss_pred             cCCCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcCC----CCcHHHHh
Confidence            3446799999965689999999999999999999999999999 5  489999999999984443332    56899999


Q ss_pred             ccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHhcCCCC
Q 017536          216 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAG  274 (369)
Q Consensus       216 ~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~~~~~~  274 (369)
                       ++++++++++++.+|++.|.+++.+++||+|++|+++|+||..||++++++++.++.+
T Consensus        93 -~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l~~~~~de~~  150 (153)
T 3oco_A           93 -RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEELFGNLRDEQD  150 (153)
T ss_dssp             -BCCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHHHC-------
T ss_pred             -CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHHhccCCCccc
Confidence             8999999999999999999999999999999999999999999999999998876654

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.85  E-value=5.3e-21  Score=158.89  Aligned_cols=132  Identities=14%  Similarity=0.146  Sum_probs=116.3

Q ss_pred             HhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-C-CEEEEEeehHHHHHHHHhcCCCcccccccccc
Q 017536          138 RMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVM  215 (369)
Q Consensus       138 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~-~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m  215 (369)
                      .+...+++++|+|+.+++++++++++.+|++.|.+++++++||++ + ++++|+||.+|++...... .   ..++.  |
T Consensus        32 ~l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~~-~---~~~v~--~  105 (173)
T 3ocm_A           32 TLAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITE-G---RVRRN--R  105 (173)
T ss_dssp             HHTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHHH-S---SCCGG--G
T ss_pred             ccCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhcC-C---cchhH--h
Confidence            356788999999767899999999999999999999999999998 5 7999999999998443332 1   45677  4


Q ss_pred             ccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHhcCCCCC
Q 017536          216 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGS  275 (369)
Q Consensus       216 ~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~~~~~~~  275 (369)
                      .++++++++++++.+|++.|.+++.+.+||+|++|+++|+||..||++++++++.++.+.
T Consensus       106 ~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~~i~de~~~  165 (173)
T 3ocm_A          106 LRDPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIAGEFPDEDEL  165 (173)
T ss_dssp             SBCCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHHHCCCCCTTSC
T ss_pred             cCCCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHHhCcCCCcccc
Confidence            478899999999999999999999999999999999999999999999999988776653

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.85  E-value=2.4e-21  Score=152.67  Aligned_cols=122  Identities=19%  Similarity=0.269  Sum_probs=107.0

Q ss_pred             CCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-C-CEEEEEeehHHHHHHHHhcCCCccccccccccccCC
Q 017536          142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  219 (369)
Q Consensus       142 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~-~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~  219 (369)
                      .+++++|.++.+++++++++++.+|++.|.+++++++||++ + |+++|++|.+|++ +.+....  ...+++++|. ++
T Consensus         3 ~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~-~~~~~~~--~~~~v~~~m~-~~   78 (127)
T 3nqr_A            3 QRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLL-PFMRSDA--EAFSMDKVLR-TA   78 (127)
T ss_dssp             CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGG-GGGSTTC--CCCCHHHHCB-CC
T ss_pred             cCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHH-HHHhccC--CCCCHHHHcC-CC
Confidence            46889999655699999999999999999999999999999 5 7999999999997 4443222  2678999994 58


Q ss_pred             ceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHH
Q 017536          220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (369)
Q Consensus       220 ~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~  267 (369)
                      +++++++++.+|++.|.+++.+++||+|++|+++|+||..|+++++++
T Consensus        79 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l~g  126 (127)
T 3nqr_A           79 VVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVG  126 (127)
T ss_dssp             CEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC--
T ss_pred             eEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence            899999999999999999999999999999999999999999998765

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.84  E-value=1.7e-21  Score=161.57  Aligned_cols=128  Identities=23%  Similarity=0.242  Sum_probs=110.0

Q ss_pred             HHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCC----------
Q 017536          136 RERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL----------  204 (369)
Q Consensus       136 ~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~----------  204 (369)
                      ...+...+++++|+  ++++++++++++.+|++.|.+++++++||+| +|+++|+||.+|+++ ......          
T Consensus        12 ~~~l~~~~V~diM~--~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~-~~~~~~~~~~~~~~~~   88 (170)
T 4esy_A           12 ARAIRQVPIRDILT--SPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLR-GSIPFWIYEASEILSR   88 (170)
T ss_dssp             HHHHHTSBGGGGCC--SCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGG-GTCCTTHHHHHHHHTT
T ss_pred             HHHHcCCCHHHhcC--CCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHH-HHhhccccchhhhhhh
Confidence            33455678999998  6899999999999999999999999999998 899999999999972 211110          


Q ss_pred             ------------CccccccccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHH
Q 017536          205 ------------PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (369)
Q Consensus       205 ------------~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~  267 (369)
                                  .....+++++|+++++++++++++.+|+++|.+++++++||+| +|+++|+||..||+++++.
T Consensus        89 ~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd-~g~lvGivt~~Dil~~l~~  162 (170)
T 4esy_A           89 AIPAPEVEHLFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ-DGVPVGIVTRRDLLKLLLL  162 (170)
T ss_dssp             TSCHHHHHHHHHHHTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHTTTSCC
T ss_pred             ccchhhHHhhhccccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEE-CCEEEEEEEHHHHHHHHHh
Confidence                        0114578999999999999999999999999999999999998 6999999999999986643

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.84  E-value=2.5e-21  Score=160.57  Aligned_cols=143  Identities=23%  Similarity=0.312  Sum_probs=114.4

Q ss_pred             CcccccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 017536           38 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG  116 (369)
Q Consensus        38 ~~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~  116 (369)
                      +.+.+|+|+|+++++++.+++++.+|++.|.+++++++||+| +|+++|++|..|+++............          
T Consensus        15 l~~~~V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~~~~~~~~~~----------   84 (170)
T 4esy_A           15 IRQVPIRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSIPFWIYEASE----------   84 (170)
T ss_dssp             HHTSBGGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTCCTTHHHHHH----------
T ss_pred             HcCCCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHHhhccccchhh----------
Confidence            346899999999999999999999999999999999999998 799999999999986532211100000          


Q ss_pred             HHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHH
Q 017536          117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (369)
Q Consensus       117 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll  196 (369)
                         .  ..............+.....+++++|+  ++++++++++++.+|+++|.+++++++||+++|+++|+||.+|++
T Consensus        85 ---~--~~~~~~~~~~~~~~~~~~~~~v~~im~--~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~g~lvGivt~~Dil  157 (170)
T 4esy_A           85 ---I--LSRAIPAPEVEHLFETGRKLTASAVMT--QPVVTAAPEDSVGSIADQMRRHGIHRIPVVQDGVPVGIVTRRDLL  157 (170)
T ss_dssp             ---H--HTTTSCHHHHHHHHHHHTTCBHHHHCB--CCSCCBCTTSBHHHHHHHHHHTTCSEEEEEETTEEEEEEEHHHHT
T ss_pred             ---h--hhhccchhhHHhhhccccccchhhhcc--cCcccCCcchhHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHHH
Confidence               0  000111223344455667788999998  689999999999999999999999999999999999999999998


Q ss_pred             H
Q 017536          197 M  197 (369)
Q Consensus       197 ~  197 (369)
                      +
T Consensus       158 ~  158 (170)
T 4esy_A          158 K  158 (170)
T ss_dssp             T
T ss_pred             H
Confidence            3

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.83  E-value=1.2e-19  Score=143.84  Aligned_cols=125  Identities=28%  Similarity=0.410  Sum_probs=112.3

Q ss_pred             CCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCCc
Q 017536          141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE  220 (369)
Q Consensus       141 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~  220 (369)
                      ..+++++|.  ++++++++++++.+|++.|.+++++++||+++|+++|++|.+|++ +.+..+.. ...++.++|.+++.
T Consensus         3 ~~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~-~~~~~~~~-~~~~v~~~~~~~~~   78 (133)
T 2ef7_A            3 EEIVKEYMK--TQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIV-KAIGKGKS-LETKAEEFMTASLI   78 (133)
T ss_dssp             CCBGGGTSB--CSCCEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHH-HHHHTTCC-TTCBGGGTSEECCC
T ss_pred             cccHHHhcc--CCCEEECCCCcHHHHHHHHHhcCCCEEEEEECCEEEEEEcHHHHH-HHHhcCCC-cccCHHHHcCCCCE
Confidence            457899998  468999999999999999999999999999988999999999997 55544332 25789999999999


Q ss_pred             eecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHh
Q 017536          221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  269 (369)
Q Consensus       221 ~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~  269 (369)
                      ++++++++.++++.|.+++.+++||+|++|+++|+||..|+++++....
T Consensus        79 ~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~~~  127 (133)
T 2ef7_A           79 TIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDMF  127 (133)
T ss_dssp             CEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHC
T ss_pred             EECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999877655

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.82  E-value=5.4e-20  Score=145.02  Aligned_cols=123  Identities=13%  Similarity=0.081  Sum_probs=109.5

Q ss_pred             CCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCCc
Q 017536          141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE  220 (369)
Q Consensus       141 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~  220 (369)
                      ..+++++|.  ++++++++++++.+|++.|.+++++++||+++|+++|++|.+|++ +....+.. ...+++++|.+++.
T Consensus         4 s~~v~~~m~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~-~~~~~~~~-~~~~v~~~m~~~~~   79 (128)
T 3gby_A            4 SVTFSYLAE--TDYPVFTLGGSTADAARRLAASGCACAPVLDGERYLGMVHLSRLL-EGRKGWPT-VKEKLGEELLETVR   79 (128)
T ss_dssp             TCBGGGGCB--CCSCCEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHH-TTCSSSCC-TTCBCCGGGCBCCC
T ss_pred             ceEHHHhhc--CCcceECCCCCHHHHHHHHHHCCCcEEEEEECCEEEEEEEHHHHH-HHHhhCCc-ccCcHHHHccCCCc
Confidence            457899998  679999999999999999999999999999999999999999997 44433322 13679999999999


Q ss_pred             eecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHH
Q 017536          221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (369)
Q Consensus       221 ~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~  267 (369)
                      ++++++++.++++.|.+++.+++||+|++|+++|+||..|+++++..
T Consensus        80 ~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l~~  126 (128)
T 3gby_A           80 SYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLAE  126 (128)
T ss_dssp             CBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHHHT
T ss_pred             EECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999987643

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.82  E-value=7.1e-20  Score=145.68  Aligned_cols=124  Identities=27%  Similarity=0.464  Sum_probs=110.2

Q ss_pred             CccccccCC-CceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCCce
Q 017536          143 SLSTIIPEK-SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPEC  221 (369)
Q Consensus       143 ~v~~im~~~-~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~  221 (369)
                      +++++|.|+ ++++++++++++.+|++.|.+++++++||+++|+++|++|.+|+++.+...+......++.++|.+++.+
T Consensus         7 ~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~~~~   86 (135)
T 2rc3_A            7 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTRQVAY   86 (135)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBCSCCC
T ss_pred             eHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEECCEEEEEEehHHHHHHHHHcCCCcccCCHHHhccCCCeE
Confidence            578888743 5789999999999999999999999999999899999999999974455444334477899999999999


Q ss_pred             ecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHH
Q 017536          222 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (369)
Q Consensus       222 v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~  267 (369)
                      +++++++.+|++.|.+++.+++||+| +|+++|+||..|+++++..
T Consensus        87 v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dll~~~~~  131 (135)
T 2rc3_A           87 VDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAIS  131 (135)
T ss_dssp             BCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC
T ss_pred             ECCCCcHHHHHHHHHHhCCCEEEEEe-CCEEEEEEEHHHHHHHHHh
Confidence            99999999999999999999999999 7999999999999997754

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.82  E-value=4.2e-19  Score=145.38  Aligned_cols=134  Identities=20%  Similarity=0.222  Sum_probs=117.1

Q ss_pred             HHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccc
Q 017536          134 TLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVE  212 (369)
Q Consensus       134 ~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~  212 (369)
                      .+...+...+++++|.+   ++++++++++.+|++.|.+++++++||++ +|+++|++|.+|++ +.+.........++.
T Consensus         9 ~l~~~l~~~~v~~im~~---~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~-~~~~~~~~~~~~~v~   84 (159)
T 3fv6_A            9 LLADKLKKLQVKDFQSI---PVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLL-RASIGQQELTSVPVH   84 (159)
T ss_dssp             HHHHHHTTCBGGGSCBC---CCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHH-HHHTSCSCTTTCBGG
T ss_pred             HHHHHHhhCCHHHHcCC---CEEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHH-HHhhccCcccCcCHH
Confidence            35566778899999983   55999999999999999999999999999 89999999999997 544333333467999


Q ss_pred             ccccc--CCceecCCCCHHHHHHHHHhCCCceeeEEcCCC---cEEEEEeHHHHHHHHHHHhcC
Q 017536          213 KVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVDRDG---DVVDVVDVIHITHAAVATVGN  271 (369)
Q Consensus       213 ~~m~~--~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g---~~~Givt~~di~~~~~~~~~~  271 (369)
                      ++|.+  +++++++++++.+|++.|.+++++++||+|++|   +++|+||..||++++......
T Consensus        85 ~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~~~~~~  148 (159)
T 3fv6_A           85 IIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVSLSEN  148 (159)
T ss_dssp             GTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHHHHHTT
T ss_pred             HHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHHHHhhc
Confidence            99988  899999999999999999999999999999888   999999999999988765543

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.81  E-value=2.4e-19  Score=157.59  Aligned_cols=218  Identities=17%  Similarity=0.219  Sum_probs=140.3

Q ss_pred             ccccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHH--HhhhhHHHHHHHh
Q 017536           40 ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERA--AEKGKAIAAAVEG  116 (369)
Q Consensus        40 ~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~--~~~~~~~~~~~~~  116 (369)
                      ..+|+++|+++++++.+++++.+|+++|.+++++++||+| +|+++|+++..|+++.........  ......+......
T Consensus         6 ~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~~v~~~   85 (245)
T 3l2b_A            6 KLKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDIWDSNILAKSATSLDNILDT   85 (245)
T ss_dssp             CCBGGGSCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHHHHHHH
T ss_pred             cCcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHhhhhhhhhhccCCHHHHHHH
Confidence            5789999999999999999999999999999999999999 699999999999988754211000  0000000000000


Q ss_pred             HHHhcCCCCCChhhHHHHH-HHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCC-----------
Q 017536          117 VEKHWGTSISGPNTFIETL-RERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVEN-----------  184 (369)
Q Consensus       117 ~~~~~g~~~~~~~~~~~~~-~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~-----------  184 (369)
                      .....-.+..........+ ...+....+.+.+.+ ..++.+..   -.++...+.+.+.++++++.+.           
T Consensus        86 l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~-~~ivIvgd---r~~~~~~~i~~~~~~liit~~~~~~~~v~~~a~  161 (245)
T 3l2b_A           86 LSAEAQNINEERKVFPGKVVVAAMQAESLKEFISE-GDIAIAGD---RAEIQAELIELKVSLLIVTGGHTPSKEIIELAK  161 (245)
T ss_dssp             TTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCT-TCEEEECS---CHHHHHHHHHTTCSEEEECTTCCCCHHHHHHHH
T ss_pred             hCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCC-CCEEEECC---CHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHH
Confidence            0000000000000000000 000111122334443 44555533   3577888899999999888522           


Q ss_pred             --EEEEEeehHHHHHHHHhcCCCccccccccccc-cCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHH
Q 017536          185 --KPRGILTSKDILMRVISQNLPADSTLVEKVMT-PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHI  261 (369)
Q Consensus       185 --~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~-~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di  261 (369)
                        .+..+.|..|.+ .......  ...+++++|+ +++.++++++++.+|+++|.+++++++||+|++|+++|+||..|+
T Consensus       162 ~~~~~~i~t~~d~~-~~~~~~~--~~~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl  238 (245)
T 3l2b_A          162 KNNITVITTPHDSF-TASRLIV--QSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHL  238 (245)
T ss_dssp             HHTCEEEECSSCHH-HHHHHGG--GGSBHHHHSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECTTCBEEEEEECC--
T ss_pred             HcCCeEEEeCCChH-HHHHHHh--cCCceeeEecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcCCCeEEEEEEHHHh
Confidence              235567777765 3222111  2568999999 899999999999999999999999999999999999999999999


Q ss_pred             HHH
Q 017536          262 THA  264 (369)
Q Consensus       262 ~~~  264 (369)
                      +++
T Consensus       239 l~~  241 (245)
T 3l2b_A          239 IST  241 (245)
T ss_dssp             ---
T ss_pred             hch
Confidence            974

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.81  E-value=5.3e-20  Score=151.75  Aligned_cols=132  Identities=21%  Similarity=0.343  Sum_probs=113.9

Q ss_pred             HhCCCCccccccCC-CceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCcccccccccc
Q 017536          138 RMFRPSLSTIIPEK-SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVM  215 (369)
Q Consensus       138 ~~~~~~v~~im~~~-~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m  215 (369)
                      .+...+++++|.+. .+++++++++++.+|++.|.+++++++||++ +|+++|++|.+|+++.+..........++.++|
T Consensus        20 ~l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m   99 (165)
T 3fhm_A           20 QGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQGAASLQQSVSVAM   99 (165)
T ss_dssp             SSSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHGGGGGTSBGGGTS
T ss_pred             hhhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhcCCccccCCHHHHh
Confidence            35567889999852 3699999999999999999999999999999 889999999999985544432233367899999


Q ss_pred             ccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHhc
Q 017536          216 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVG  270 (369)
Q Consensus       216 ~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~~  270 (369)
                      .++++++++++++.+|++.|.+++.+++||+|+ |+++|+||..||++++.....
T Consensus       100 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~~Giit~~dil~~~~~~~~  153 (165)
T 3fhm_A          100 TKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRLAGIISIGDVVKARIGEIE  153 (165)
T ss_dssp             BSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHTTCC--
T ss_pred             cCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998 999999999999997765543

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.81  E-value=1.8e-19  Score=141.14  Aligned_cols=120  Identities=22%  Similarity=0.235  Sum_probs=108.0

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCCcee
Q 017536          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECA  222 (369)
Q Consensus       143 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v  222 (369)
                      +++++|.  ++++++++++++.+|++.|.+++.+++||+++|+++|++|.+|++ +.+..+......++.++|.+++.++
T Consensus         2 ~v~~~m~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~G~it~~dl~-~~~~~~~~~~~~~v~~~m~~~~~~v   78 (125)
T 1pbj_A            2 RVEDVMV--TDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVL-EAIAEGDDLAEVKVWEVMERDLVTI   78 (125)
T ss_dssp             CHHHHCB--CSCCEEETTCBHHHHHHHHHHHCCCEEEEEETTEEEEEEEHHHHH-HHHHHTCCTTTSBHHHHCBCGGGEE
T ss_pred             CHHHhcC--CCceEECCCCcHHHHHHHHHHcCCCEEEEEeCCeeEEEEeHHHHH-HHHhcCCcccccCHHHHcCCCCeEE
Confidence            4678887  579999999999999999999999999999999999999999997 5554444434678999999999999


Q ss_pred             cCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHH
Q 017536          223 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (369)
Q Consensus       223 ~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~  266 (369)
                      ++++++.++++.|.+++.+++||+|+ |+++|+||..|+++++.
T Consensus        79 ~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~Gvit~~dl~~~l~  121 (125)
T 1pbj_A           79 SPRATIKEAAEKMVKNVVWRLLVEED-DEIIGVISATDILRAKM  121 (125)
T ss_dssp             CTTSCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHhcCCcEEEEEEC-CEEEEEEEHHHHHHHHH
Confidence            99999999999999999999999998 99999999999998764

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.81  E-value=2.3e-19  Score=143.22  Aligned_cols=129  Identities=24%  Similarity=0.441  Sum_probs=113.9

Q ss_pred             hCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCcccccccccccc
Q 017536          139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP  217 (369)
Q Consensus       139 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~  217 (369)
                      +...+++++|.  ++++++++++++.+|++.|.+++++++||++ +|+++|++|.+|++++++..+. ....++.++|.+
T Consensus         4 l~~~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~-~~~~~v~~~m~~   80 (138)
T 2yzi_A            4 DMKAPIKVYMT--KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGL-PYDIPVERIMTR   80 (138)
T ss_dssp             CTTSBGGGTCB--CCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCC-CTTSBGGGTCBC
T ss_pred             hhhhhHHHHhc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhcCC-cccCCHHHHhhC
Confidence            34567999998  6799999999999999999999999999999 8999999999999744544333 236789999999


Q ss_pred             CCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHhcC
Q 017536          218 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGN  271 (369)
Q Consensus       218 ~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~~~  271 (369)
                      +++++++++++.+|++.|.+++.+++ |+|++|+++|+||..||++++...+..
T Consensus        81 ~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~dil~~~~~~~~~  133 (138)
T 2yzi_A           81 NLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDLLEASRRRLET  133 (138)
T ss_dssp             SCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHHHHHHHCCSCC
T ss_pred             CCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHHHHHHHHHHHh
Confidence            99999999999999999999999999 999899999999999999988766543

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.81  E-value=1.2e-19  Score=147.15  Aligned_cols=129  Identities=18%  Similarity=0.166  Sum_probs=112.5

Q ss_pred             hCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCC-----Cccccccc
Q 017536          139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL-----PADSTLVE  212 (369)
Q Consensus       139 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~-----~~~~~~v~  212 (369)
                      +...+++++|.+..+++++++++++.+|++.|.+++++++||++ +|+++|++|.+|++ +.+....     .....++.
T Consensus        12 l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~-~~~~~~~~~~~~~~~~~~v~   90 (150)
T 3lqn_A           12 FQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMIL-DGILGLERIEFERLEEMKVE   90 (150)
T ss_dssp             HHHCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHH-HHTBCSSSBCGGGGGGCBGG
T ss_pred             hhcCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHH-HHHHhhcccchhHHhcCCHH
Confidence            44567999999755799999999999999999999999999999 89999999999997 5443211     12357899


Q ss_pred             cccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHhc
Q 017536          213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVG  270 (369)
Q Consensus       213 ~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~~  270 (369)
                      ++|.++++++++++++.+|++.|.++++  +||+|++|+++|+||..||++++...+.
T Consensus        91 ~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~dil~~l~~~~~  146 (150)
T 3lqn_A           91 QVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLLNKKVR  146 (150)
T ss_dssp             GTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHHHHHHHHHC-
T ss_pred             HHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHHHHHHHHHhH
Confidence            9999999999999999999999999987  9999999999999999999998887664

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.81  E-value=2.2e-19  Score=140.15  Aligned_cols=117  Identities=25%  Similarity=0.295  Sum_probs=106.3

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCce
Q 017536          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPEC  221 (369)
Q Consensus       143 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~  221 (369)
                      +++++|.  ++++++++++++.++++.|.+++++++||++ +|+++|++|.+|++ +.+...    ..++.++|.+++.+
T Consensus         2 ~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~-~~~~~~----~~~v~~~~~~~~~~   74 (122)
T 3kpb_A            2 LVKDILS--KPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIA-KALAQN----KKTIEEIMTRNVIT   74 (122)
T ss_dssp             BHHHHCC--SCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHH-HHHHTT----CCBGGGTSBSSCCC
T ss_pred             chHHhhC--CCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHH-HHHHhc----ccCHHHHhcCCCeE
Confidence            5778898  5788999999999999999999999999999 89999999999997 544433    34899999999999


Q ss_pred             ecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHH
Q 017536          222 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (369)
Q Consensus       222 v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~  266 (369)
                      +++++++.++++.|.+++.+++||+|++|+++|+||..|+++++.
T Consensus        75 v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l~  119 (122)
T 3kpb_A           75 AHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFG  119 (122)
T ss_dssp             EETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHC
T ss_pred             ECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHhh
Confidence            999999999999999999999999999999999999999998654

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.81  E-value=9.8e-20  Score=148.81  Aligned_cols=131  Identities=23%  Similarity=0.370  Sum_probs=114.4

Q ss_pred             CCccccccCC----CceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCCcccccccccccc
Q 017536          142 PSLSTIIPEK----SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP  217 (369)
Q Consensus       142 ~~v~~im~~~----~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~  217 (369)
                      .+++++|.++    ++++++++++++.+|++.|.+++++++||.++|+++|++|.+|+++.+..........++.++|.+
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~   86 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDDIAGIVTERDYARKVVLQERSSKATRVEEIMTA   86 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEESSSSEEEEEEHHHHHHHSGGGTCCSSSCBHHHHSBS
T ss_pred             HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHHhccCCccccCHHHHcCC
Confidence            4588899865    567999999999999999999999999997789999999999998444444433346789999999


Q ss_pred             CCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHhcCCC
Q 017536          218 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTA  273 (369)
Q Consensus       218 ~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~~~~~  273 (369)
                      ++.++++++++.+|+++|.+++.+++||+| +|+++|+||..||++++........
T Consensus        87 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dil~~l~~~~~~~~  141 (157)
T 4fry_A           87 KVRYVEPSQSTDECMALMTEHRMRHLPVLD-GGKLIGLISIGDLVKSVIADQQFTI  141 (157)
T ss_dssp             SCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTCCCCC
T ss_pred             CCcEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHHHHhhH
Confidence            999999999999999999999999999999 7999999999999999887665433

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.81  E-value=3.7e-19  Score=142.60  Aligned_cols=120  Identities=22%  Similarity=0.357  Sum_probs=107.6

Q ss_pred             CCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CC--EEEEEeehHHHHHHHHhcCCCccccccccccccC
Q 017536          142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-EN--KPRGILTSKDILMRVISQNLPADSTLVEKVMTPN  218 (369)
Q Consensus       142 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~--~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~  218 (369)
                      .+++++|.  ++++++++++++.+|++.|.+++++++||++ ++  +++|++|.+|++ +.+..+... ..++.++|.++
T Consensus         5 ~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~-~~~~~~~~~-~~~v~~~m~~~   80 (141)
T 2rih_A            5 IRTSELLK--RPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDIL-RAVAQRLDL-DGPAMPIANSP   80 (141)
T ss_dssp             CBGGGGCC--SCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHH-HHHHTTCCT-TSBSGGGCBCC
T ss_pred             eEHHHHhc--CCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHH-HHHhcCCCC-CCCHHHHcCCC
Confidence            56899998  5799999999999999999999999999999 56  899999999997 554443322 57899999999


Q ss_pred             CceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHH
Q 017536          219 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (369)
Q Consensus       219 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~  266 (369)
                      +++++++ ++.+|++.|.+++.+++||+|++|+++|+||..||++++.
T Consensus        81 ~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~  127 (141)
T 2rih_A           81 ITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERA  127 (141)
T ss_dssp             CEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCHH
T ss_pred             CeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHHHH
Confidence            9999999 9999999999999999999999999999999999998654

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.81  E-value=5.9e-20  Score=150.02  Aligned_cols=120  Identities=14%  Similarity=0.190  Sum_probs=107.3

Q ss_pred             HhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-C-CEEEEEeehHHHHHHHHhcCCCcccccccccc
Q 017536          138 RMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVM  215 (369)
Q Consensus       138 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~-~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m  215 (369)
                      .+...+++++|+++.+++++++++++.+|++.|.+++++++||++ + ++++|++|.+|++ +....+   ...++.++|
T Consensus        34 ~l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~-~~~~~~---~~~~v~~im  109 (156)
T 3oi8_A           34 DFSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLL-KYMFNP---EQFHLKSIL  109 (156)
T ss_dssp             HHTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGG-GGSSCG---GGCCHHHHC
T ss_pred             ccCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHH-HHHHcC---CcccHHHHc
Confidence            356788999999766899999999999999999999999999998 5 5999999999997 443222   367899999


Q ss_pred             ccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHH
Q 017536          216 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHIT  262 (369)
Q Consensus       216 ~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~  262 (369)
                      . +++++++++++.+|++.|.+++.+++||+|++|+++|+||..||+
T Consensus       110 ~-~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil  155 (156)
T 3oi8_A          110 R-PAVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII  155 (156)
T ss_dssp             B-CCCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred             C-CCEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence            5 589999999999999999999999999999999999999999986

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.80  E-value=3.8e-19  Score=141.89  Aligned_cols=125  Identities=27%  Similarity=0.361  Sum_probs=110.3

Q ss_pred             hCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHH-HHHHHhcCCCccccccccccc
Q 017536          139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI-LMRVISQNLPADSTLVEKVMT  216 (369)
Q Consensus       139 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dl-l~~~~~~~~~~~~~~v~~~m~  216 (369)
                      +...+++++|.  +++.++++++++.++++.|.+++.+++||++ +|+++|++|.+|+ + +.+..... ...++.++|.
T Consensus         5 l~~~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~-~~~~~~~~-~~~~v~~~m~   80 (138)
T 2p9m_A            5 LKNIKVKDVMT--KNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGY-NLIRDKYT-LETTIGDVMT   80 (138)
T ss_dssp             CTTCBGGGTSB--CSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHH-HHTTTCCC-SSCBHHHHSC
T ss_pred             cccCCHHHhhc--CCceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHH-HHHhhccc-CCcCHHHHhC
Confidence            45678999998  5788999999999999999999999999999 8999999999999 7 44443322 3678999999


Q ss_pred             cCCceecCCCCHHHHHHHHHhCC-----CceeeEEcCCCcEEEEEeHHHHHHHHHH
Q 017536          217 PNPECATIDTPIVDALHIMHDGK-----FLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (369)
Q Consensus       217 ~~~~~v~~~~~l~~a~~~~~~~~-----~~~l~Vvd~~g~~~Givt~~di~~~~~~  267 (369)
                      +++.++++++++.++++.|.+++     .+++||+|++|+++|+||..|+++++..
T Consensus        81 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~  136 (138)
T 2p9m_A           81 KDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTISK  136 (138)
T ss_dssp             SSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             CCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHHHHHHHHh
Confidence            99999999999999999999999     9999999999999999999999987654

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.80  E-value=2.1e-19  Score=145.51  Aligned_cols=121  Identities=20%  Similarity=0.231  Sum_probs=109.5

Q ss_pred             CCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCC
Q 017536          141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  219 (369)
Q Consensus       141 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~  219 (369)
                      ..+++++|.+..+++++++++++.+|++.|.+++++++||++ +|+++|+||.+|++ +.+..+......++.++|.+++
T Consensus        27 ~~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~-~~~~~~~~~~~~~v~~~m~~~~  105 (149)
T 3k2v_A           27 LLRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLR-RVFDTGVDMRDASIADVMTRGG  105 (149)
T ss_dssp             TSBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHH-HHHCSSSCCTTCBHHHHSEESC
T ss_pred             ccCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHH-HHHhcCCCcccCcHHHHcCCCC
Confidence            467999999544899999999999999999999999999999 89999999999997 6665554444789999999999


Q ss_pred             ceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017536          220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (369)
Q Consensus       220 ~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~  263 (369)
                      +++++++++.+|++.|.+++.+++||+|++ +++|+||..||++
T Consensus       106 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~Giit~~dil~  148 (149)
T 3k2v_A          106 IRIRPGTLAVDALNLMQSRHITCVLVADGD-HLLGVVHMHDLLR  148 (149)
T ss_dssp             CEECTTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEHHHHTC
T ss_pred             eEECCCCCHHHHHHHHHHcCCCEEEEecCC-EEEEEEEHHHhhc
Confidence            999999999999999999999999999965 9999999999975

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.80  E-value=1.3e-18  Score=140.58  Aligned_cols=136  Identities=18%  Similarity=0.337  Sum_probs=107.7

Q ss_pred             EEEeHHHHHHHHHhccCCCccccccccccc--CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-C-CeEEEEEehHHHHHH
Q 017536           20 GILTDKDIATRVIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYD   95 (369)
Q Consensus        20 Givt~~Di~~~~~~~~~~~~~~~v~dim~~--~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~-~~~vGiv~~~dil~~   95 (369)
                      |.++..+  +..+.....+...+|+++|++  +++++++++++.+|++.|.+++++++||+| + |+++|+++..|++..
T Consensus         4 g~l~~~e--~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~   81 (148)
T 3lv9_A            4 GLIDESE--QRLVDNIFEFEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQ   81 (148)
T ss_dssp             ----------------CGGGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHH
T ss_pred             CccCHHH--HHHHHHHhccCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHH
Confidence            5566544  344455567788999999998  999999999999999999999999999998 4 899999999999865


Q ss_pred             HHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCC
Q 017536           96 AIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRL  175 (369)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~  175 (369)
                      ...                                        ....+++++|.   +++++++++++.++++.|.+++.
T Consensus        82 ~~~----------------------------------------~~~~~v~~~m~---~~~~v~~~~~l~~~~~~m~~~~~  118 (148)
T 3lv9_A           82 KIN----------------------------------------ENKIELEEILR---DIIYISENLTIDKALERIRKEKL  118 (148)
T ss_dssp             HHH----------------------------------------HSCCCGGGTCB---CCEEEETTSBHHHHHHHHHHHTC
T ss_pred             Hhc----------------------------------------CCCccHHHhcC---CCeEECCCCCHHHHHHHHHhcCC
Confidence            221                                        01456889994   48899999999999999999999


Q ss_pred             ceEEEEe-CCEEEEEeehHHHHHHHH
Q 017536          176 SSAVVTV-ENKPRGILTSKDILMRVI  200 (369)
Q Consensus       176 ~~~~V~d-~~~~~Giit~~dll~~~~  200 (369)
                      +.+||++ +|+++|++|..|+++.+.
T Consensus       119 ~~l~Vvd~~g~~~Giit~~dil~~l~  144 (148)
T 3lv9_A          119 QLAIVVDEYGGTSGVVTIEDILEEIV  144 (148)
T ss_dssp             SEEEEECTTSSEEEEEEHHHHHHHHH
T ss_pred             eEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence            9999999 799999999999985554

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.80  E-value=2.2e-19  Score=145.59  Aligned_cols=128  Identities=27%  Similarity=0.390  Sum_probs=109.0

Q ss_pred             CCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcC-------------CCc
Q 017536          141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN-------------LPA  206 (369)
Q Consensus       141 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~-------------~~~  206 (369)
                      ..+++++|.++.+++++++++++.+|++.|.+++++++||++ +++++|++|.+|++ ++....             ...
T Consensus         4 ~~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~-~~~~~~~~~~~~~~~~~~~~~~   82 (152)
T 4gqw_A            4 VYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLL-ALDSGDSTWKTFNAVQKLLSKT   82 (152)
T ss_dssp             CSBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHT-TCC----CCHHHHHHHTC----
T ss_pred             eEEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHH-HhhcccCcccchHHHHHHHHHh
Confidence            356899999655899999999999999999999999999999 78999999999996 321100             112


Q ss_pred             cccccccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHh
Q 017536          207 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  269 (369)
Q Consensus       207 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~  269 (369)
                      ...++.++|.++++++++++++.+|++.|.+++.+++||+|++|+++|+||..||++++....
T Consensus        83 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~~~~  145 (152)
T 4gqw_A           83 NGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQIK  145 (152)
T ss_dssp             -CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHHC--
T ss_pred             ccccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHHhcc
Confidence            256899999999999999999999999999999999999999999999999999999877544

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.79  E-value=1e-18  Score=142.64  Aligned_cols=130  Identities=15%  Similarity=0.193  Sum_probs=112.1

Q ss_pred             hCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCC-----Cccccccc
Q 017536          139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL-----PADSTLVE  212 (369)
Q Consensus       139 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~-----~~~~~~v~  212 (369)
                      +...+++++|.+..+++++++++++.+|++.|.+++++++||++ +|+++|++|.+|++ +.+....     .....++.
T Consensus         8 l~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~-~~~~~~~~~~~~~~~~~~v~   86 (157)
T 2emq_A            8 FMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMM-DAILGLERIEFERLETMKVE   86 (157)
T ss_dssp             --CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHH-HHSBCSSSBCGGGGGTCBGG
T ss_pred             HhhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHH-HHHhcccccchHHhcCCcHH
Confidence            45678999998544799999999999999999999999999999 79999999999997 5443211     12356899


Q ss_pred             cccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHhcC
Q 017536          213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGN  271 (369)
Q Consensus       213 ~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~~~  271 (369)
                      ++|.++++++++++++.+|++.|.++++  +||+|++|+++|+||..||++++......
T Consensus        87 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~~~~~~~  143 (157)
T 2emq_A           87 EVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQLNKQLHR  143 (157)
T ss_dssp             GTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHHHHTTCC
T ss_pred             HHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHHHHHhhc
Confidence            9999999999999999999999999987  99999999999999999999988876654

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.79  E-value=1.4e-19  Score=143.47  Aligned_cols=121  Identities=17%  Similarity=0.320  Sum_probs=107.7

Q ss_pred             CCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCc
Q 017536          142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE  220 (369)
Q Consensus       142 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~  220 (369)
                      .+++++|.  ++++++++++++.++++.|.+++++++||++ +++++|++|.+|++++++..+......++.++|.++++
T Consensus         8 ~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~~~   85 (133)
T 1y5h_A            8 TTARDIMN--AGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDSIY   85 (133)
T ss_dssp             CCHHHHSE--ETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTTCCC
T ss_pred             cCHHHHhc--CCceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhcCCCccccCHHHHhcCCCE
Confidence            46889998  5788999999999999999999999999997 89999999999997445544433346789999999999


Q ss_pred             eecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHH
Q 017536          221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (369)
Q Consensus       221 ~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~  265 (369)
                      ++++++++.++++.|.+++.+++||+|+ |+++|+||..||++++
T Consensus        86 ~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~dil~~l  129 (133)
T 1y5h_A           86 YVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARHL  129 (133)
T ss_dssp             CEETTCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHTC
T ss_pred             EECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHH
Confidence            9999999999999999999999999997 9999999999999854

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.79  E-value=6.5e-19  Score=147.13  Aligned_cols=130  Identities=22%  Similarity=0.323  Sum_probs=110.9

Q ss_pred             CCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcC-----------------
Q 017536          142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN-----------------  203 (369)
Q Consensus       142 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~-----------------  203 (369)
                      .+++++|.++.+++++++++++.+|++.|.+++++++||++ +++++|++|.+|+++......                 
T Consensus         4 ~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~   83 (180)
T 3sl7_A            4 YTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWK   83 (180)
T ss_dssp             CBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC-------------------CCC
T ss_pred             eeHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhhhhhccccCCcccccccccchhh
Confidence            35789998544899999999999999999999999999999 899999999999962111000                 


Q ss_pred             ---------CCccccccccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHhcC
Q 017536          204 ---------LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGN  271 (369)
Q Consensus       204 ---------~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~~~  271 (369)
                               ......++.++|.++++++++++++.+|+++|.+++++++||+|++|+++|+||..||++++......
T Consensus        84 ~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~~~~~~~  160 (180)
T 3sl7_A           84 TFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQIKRN  160 (180)
T ss_dssp             SHHHHHHHHHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHHhhh
Confidence                     01125689999999999999999999999999999999999999999999999999999988776543

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.79  E-value=2.7e-18  Score=146.39  Aligned_cols=123  Identities=15%  Similarity=0.232  Sum_probs=110.8

Q ss_pred             hCCCCccccccCCCceeEeCCCCcHHHHHHHHHHc---CCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccc
Q 017536          139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLEL---RLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKV  214 (369)
Q Consensus       139 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~---~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~  214 (369)
                      +...+++++|+  +++++++++.|+.+|++.|.+.   +++.+||++ +++++|++|.+|++ ..      ....+++++
T Consensus        51 ~~~~~v~~iM~--~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll-~~------~~~~~v~~i  121 (205)
T 3kxr_A           51 YSENEIGRYTD--HQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIF-KH------EPHEPLISL  121 (205)
T ss_dssp             SCTTCGGGGCB--CCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHT-TS------CTTSBGGGG
T ss_pred             CCcchHHhhcc--CceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHH-hC------CCcchHHHH
Confidence            45678999999  5899999999999999999987   789999999 89999999999996 21      125789999


Q ss_pred             cccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHhc
Q 017536          215 MTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVG  270 (369)
Q Consensus       215 m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~~  270 (369)
                      |.++++++++++++.+|++.|.+++++.+||||++|+++|+||..|+++.+..+..
T Consensus       122 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i~~e~~  177 (205)
T 3kxr_A          122 LSEDSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVREHYE  177 (205)
T ss_dssp             CCSSCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHHHHHHC
T ss_pred             hcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998766553

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.78  E-value=1.1e-18  Score=143.02  Aligned_cols=126  Identities=19%  Similarity=0.191  Sum_probs=108.8

Q ss_pred             CCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhc-------CCCccccccc
Q 017536          141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQ-------NLPADSTLVE  212 (369)
Q Consensus       141 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~-------~~~~~~~~v~  212 (369)
                      ..+++++|.  ++++++++++++.+|++.|.+++++++||++ +|+++|++|.+|+++.+...       .......++.
T Consensus         4 ~~~v~dim~--~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~~v~   81 (160)
T 2o16_A            4 MIKVEDMMT--RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLF   81 (160)
T ss_dssp             CCBGGGTSE--ESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------CCCBHH
T ss_pred             cCcHHHHhc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHHhhcccccccchhcccCHH
Confidence            356899998  5789999999999999999999999999999 79999999999997443321       1112357899


Q ss_pred             cccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHh
Q 017536          213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  269 (369)
Q Consensus       213 ~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~  269 (369)
                      ++|.++++++++++++.+|++.|.+++.+++||+|+ |+++|+||..||++++...+
T Consensus        82 ~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~lvGiit~~dil~~~~~~~  137 (160)
T 2o16_A           82 EVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITDSDFVTIAINLL  137 (160)
T ss_dssp             HHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEECHHHHHHHHHHHH
T ss_pred             HHhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-CEEEEEEEHHHHHHHHHHHh
Confidence            999999999999999999999999999999999997 99999999999999776544

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.78  E-value=1.3e-18  Score=139.73  Aligned_cols=124  Identities=15%  Similarity=0.172  Sum_probs=105.6

Q ss_pred             CCCccc---cccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCC-Ccccccccccc
Q 017536          141 RPSLST---IIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL-PADSTLVEKVM  215 (369)
Q Consensus       141 ~~~v~~---im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~-~~~~~~v~~~m  215 (369)
                      ..++++   +|.  ++++++++++++.+|++.|.+++++++||++ +|+++|++|.+|++ +.+..+. .....++.++|
T Consensus         7 ~~~v~~~~~~~~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~-~~~~~~~~~~~~~~v~~~m   83 (144)
T 2nyc_A            7 KIPIGDLNIITQ--DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVL-GLIKGGIYNDLSLSVGEAL   83 (144)
T ss_dssp             GSBGGGSSCCBC--SSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHH-HHHHTC----CCSBHHHHH
T ss_pred             hcchhhcCCCCC--CCceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHH-HHhcccccccCCccHHHHH
Confidence            456777   776  6789999999999999999999999999999 89999999999997 4443321 22356899999


Q ss_pred             cc------CCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHH
Q 017536          216 TP------NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (369)
Q Consensus       216 ~~------~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~  267 (369)
                      .+      ++.++++++++.++++.|.+++.+++||+|++|+++|+||..||++++..
T Consensus        84 ~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~  141 (144)
T 2nyc_A           84 MRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILL  141 (144)
T ss_dssp             HHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             hcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHh
Confidence            76      68999999999999999999999999999999999999999999997764

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.78  E-value=2.7e-18  Score=140.22  Aligned_cols=124  Identities=21%  Similarity=0.297  Sum_probs=107.7

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCCce-EEEEeCCEEEEEeehHHHHHHHHhc--------------CCCcc
Q 017536          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQ--------------NLPAD  207 (369)
Q Consensus       143 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~-~~V~d~~~~~Giit~~dll~~~~~~--------------~~~~~  207 (369)
                      +++++|.  ++++++++++++.+|++.|.++++++ +||+++++++|++|.+|+++.....              .....
T Consensus        17 ~v~~im~--~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~~~vGivt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (157)
T 1o50_A           17 DVCKLIS--LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLI   94 (157)
T ss_dssp             HHTTSSC--CCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHHHCCCC-------CCCCCS
T ss_pred             cHhhccc--CCCceECCCCCHHHHHHHHHhCCCCccEEEEECCEEEEEEEHHHHHHHHhhhHHhhhccHHHHHHHHHHHc
Confidence            4789998  57999999999999999999999999 9999944999999999998433210              01223


Q ss_pred             ccccccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHh
Q 017536          208 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  269 (369)
Q Consensus       208 ~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~  269 (369)
                      ..++.++|.+ ++++++++++.+|++.|.+++.+++||+|++|+++|+||..||++++...+
T Consensus        95 ~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~l~~~~  155 (157)
T 1o50_A           95 AKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKGR  155 (157)
T ss_dssp             SCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHSC
T ss_pred             CCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHHHHHhh
Confidence            6789999998 999999999999999999999999999998999999999999999876543

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.78  E-value=1.3e-18  Score=142.41  Aligned_cols=130  Identities=14%  Similarity=0.177  Sum_probs=112.0

Q ss_pred             hCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCC-----ccccccc
Q 017536          139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLP-----ADSTLVE  212 (369)
Q Consensus       139 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~-----~~~~~v~  212 (369)
                      +...+++++|.++.+++++++++++.+|++.|.+++++++||++ +|+++|++|.+|++ ..+.....     ....++.
T Consensus        11 l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~-~~~~~~~~~~~~~~~~~~v~   89 (159)
T 1yav_A           11 LLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIM-NSIFGLERIEFEKLDQITVE   89 (159)
T ss_dssp             CTTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHH-HHHBCSSSBCGGGTTTSBHH
T ss_pred             HhHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHH-HHhhhhcccchhhhccCCHH
Confidence            45678999998534799999999999999999999999999999 78999999999997 55543211     2357899


Q ss_pred             cccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHhcC
Q 017536          213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGN  271 (369)
Q Consensus       213 ~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~~~  271 (369)
                      ++|.+++.++++++++.+|++.|.++++  +||+|++|+++|+||..||++++...+..
T Consensus        90 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~dil~~~~~~~~~  146 (159)
T 1yav_A           90 EVMLTDIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKELNKHIRS  146 (159)
T ss_dssp             HHSBCSCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHHHHHHHHHHC--
T ss_pred             HhcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHHHHHHHHHHHHh
Confidence            9999999999999999999999999877  99999999999999999999988776643

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.77  E-value=1.8e-18  Score=145.20  Aligned_cols=124  Identities=24%  Similarity=0.271  Sum_probs=109.1

Q ss_pred             CCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCC
Q 017536          141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  219 (369)
Q Consensus       141 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~  219 (369)
                      ..+++++|.  ++++++++++++.+|++.|.+++++++||++ +|+++|++|.+|++..+..........++.++|.+++
T Consensus         8 ~~~v~~im~--~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~~~~~~~~~~~v~~im~~~~   85 (184)
T 1pvm_A            8 FMRVEKIMN--SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPI   85 (184)
T ss_dssp             CCBGGGTSB--TTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSSC
T ss_pred             ccCHHHhcC--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccCcccCCHHHHhCCCC
Confidence            357999998  6799999999999999999999999999998 7999999999999733332222233678999999999


Q ss_pred             ceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHH
Q 017536          220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (369)
Q Consensus       220 ~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~  266 (369)
                      +++++++++.+|++.|.+++.+++||+|++|+++|+||..||++++.
T Consensus        86 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~~~  132 (184)
T 1pvm_A           86 PKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLS  132 (184)
T ss_dssp             CEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSC
T ss_pred             cEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHH
Confidence            99999999999999999999999999999899999999999997543

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.77  E-value=1.8e-18  Score=148.67  Aligned_cols=161  Identities=16%  Similarity=0.107  Sum_probs=103.9

Q ss_pred             ccccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHH
Q 017536           40 ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE  118 (369)
Q Consensus        40 ~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~  118 (369)
                      ..++.++|.++++++.+++++.+|+++|.+++++++||+| +++++|+++..|+...                       
T Consensus        12 ~~~~~~~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~~-----------------------   68 (213)
T 1vr9_A           12 HMKVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDL-----------------------   68 (213)
T ss_dssp             -CBGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTS-----------------------
T ss_pred             ccCHHHhhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHhh-----------------------
Confidence            4578999999999999999999999999999999999998 7999999999997642                       


Q ss_pred             HhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHH
Q 017536          119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM  197 (369)
Q Consensus       119 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~  197 (369)
                                          ....+++++|.  ++++++++++++.++++.|.+++++++||++ +|+++|++|.+|+++
T Consensus        69 --------------------~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~  126 (213)
T 1vr9_A           69 --------------------DLDSSVFNKVS--LPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLE  126 (213)
T ss_dssp             --------------------CTTSBSGGGCB--CTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHH
T ss_pred             --------------------cCCCcHHHHcc--CCCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHH
Confidence                                11346899998  5789999999999999999999999999999 699999999999984


Q ss_pred             HHHhcCCCccccccccccccCC-ceecCCCCHHHHHHHHHhCCCceeeEEcCCCc
Q 017536          198 RVISQNLPADSTLVEKVMTPNP-ECATIDTPIVDALHIMHDGKFLHLPVVDRDGD  251 (369)
Q Consensus       198 ~~~~~~~~~~~~~v~~~m~~~~-~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~  251 (369)
                      .+. ...     ...+.+.+-. .+.....++.++.+.|.+++.+.++|++.+|.
T Consensus       127 ~~~-~~~-----~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~l~V~~~~~~  175 (213)
T 1vr9_A          127 ALI-EAL-----AMDVPGIRFSVLLEDKPGELRKVVDALALSNINILSVITTRSG  175 (213)
T ss_dssp             HHH-HSC-----C------------------------------------------
T ss_pred             HHH-HHh-----cCCCCcEEEEEEeCCCCccHHHHHHHHHHCCCcEEEEEEEecC
Confidence            443 222     1222232211 11233445999999999999999999876654

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.77  E-value=5.7e-18  Score=140.52  Aligned_cols=141  Identities=14%  Similarity=0.242  Sum_probs=103.2

Q ss_pred             CcEEEEEeHHHHHHHHHhccCCCcccccccccc--cCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-C-CeEEEEEehHH
Q 017536           16 ALLCGILTDKDIATRVIARELNLEETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAK   91 (369)
Q Consensus        16 ~~~~Givt~~Di~~~~~~~~~~~~~~~v~dim~--~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~-~~~vGiv~~~d   91 (369)
                      +.-.|.++..+  +..+.....+...+|+++|+  ++++++++++++.+|++.|.+++++++||++ + ++++|+++..|
T Consensus        19 ~~~~g~l~~~e--~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~d   96 (172)
T 3lhh_A           19 GSSAGVIEHNE--HAMVKNVFRLDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQ   96 (172)
T ss_dssp             --------------------------CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHH
T ss_pred             HHHcCCCCHHH--HHHHHHHhccCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHH
Confidence            34567777555  24444455777899999999  7889999999999999999999999999998 4 89999999999


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHH
Q 017536           92 CLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKML  171 (369)
Q Consensus        92 il~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~  171 (369)
                      ++.....                                        ....+++++|.   +++++++++++.++++.|.
T Consensus        97 l~~~~~~----------------------------------------~~~~~v~~im~---~~~~v~~~~~l~~a~~~m~  133 (172)
T 3lhh_A           97 LLSESIA----------------------------------------GERLELVDLVK---NCNFVPNSLSGMELLEHFR  133 (172)
T ss_dssp             HHHHHHT----------------------------------------TCCCCGGGGCB---CCEEEETTCCHHHHHHHHH
T ss_pred             HHHHHhh----------------------------------------cCcccHHHHhc---CCeEeCCCCCHHHHHHHHH
Confidence            9865210                                        11456899993   5889999999999999999


Q ss_pred             HcCCceEEEEe-CCEEEEEeehHHHHHHHHh
Q 017536          172 ELRLSSAVVTV-ENKPRGILTSKDILMRVIS  201 (369)
Q Consensus       172 ~~~~~~~~V~d-~~~~~Giit~~dll~~~~~  201 (369)
                      +++.+.+||++ +|+++|+||..|+++.+..
T Consensus       134 ~~~~~~~pVvd~~g~lvGiit~~Dil~~l~~  164 (172)
T 3lhh_A          134 TTGSQMVFVVDEYGDLKGLVTLQDMMDALTG  164 (172)
T ss_dssp             HHTCSEEEEECTTSCEEEEEEHHHHHHHHHT
T ss_pred             HcCCeEEEEEeCCCCEEEEeeHHHHHHHHhC
Confidence            99999999999 7999999999999955543

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.75  E-value=6.1e-18  Score=141.88  Aligned_cols=132  Identities=11%  Similarity=0.163  Sum_probs=111.5

Q ss_pred             HhCCCCccccccCCCc--eeEe--CCCCcHHHHHHHHHHcCCceEEEE--e-CCEEEEEeehHHHHHHHHhcC-------
Q 017536          138 RMFRPSLSTIIPEKSK--VVTI--SPTDTVLMATKKMLELRLSSAVVT--V-ENKPRGILTSKDILMRVISQN-------  203 (369)
Q Consensus       138 ~~~~~~v~~im~~~~~--~~~v--~~~~~l~~~~~~m~~~~~~~~~V~--d-~~~~~Giit~~dll~~~~~~~-------  203 (369)
                      .+...+++++|.+..+  ++++  ++++++.+|++.|.+++++++||+  + +|+++|+||.+|+++.+....       
T Consensus         7 ~~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~~~~   86 (185)
T 2j9l_A            7 FAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVV   86 (185)
T ss_dssp             --CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCC
T ss_pred             hhccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCCCcc
Confidence            3556789999996322  7788  999999999999999999999999  6 889999999999984433210       


Q ss_pred             ----------------CCccccccccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHH
Q 017536          204 ----------------LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (369)
Q Consensus       204 ----------------~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~  267 (369)
                                      ......++.++|.++++++++++++.+|++.|.+++.+++||+| +|+++|+||..||++++..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g~~vGiit~~dll~~l~~  165 (185)
T 2j9l_A           87 STSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQ  165 (185)
T ss_dssp             TTCEEECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred             ccceeecccCCcccccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence                            01235689999999999999999999999999999999999999 8999999999999998876


Q ss_pred             Hhc
Q 017536          268 TVG  270 (369)
Q Consensus       268 ~~~  270 (369)
                      ...
T Consensus       166 ~~~  168 (185)
T 2j9l_A          166 MAN  168 (185)
T ss_dssp             HCC
T ss_pred             hhc
Confidence            653

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.75  E-value=5.1e-18  Score=133.99  Aligned_cols=121  Identities=18%  Similarity=0.194  Sum_probs=100.8

Q ss_pred             Cccccccccccc--CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-C-CeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHH
Q 017536           38 LEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAA  113 (369)
Q Consensus        38 ~~~~~v~dim~~--~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~-~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~  113 (369)
                      +.+.+++++|++  +++++++++++.+|++.|.+++++++||+| + |+++|+++..|++.....               
T Consensus         3 l~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~---------------   67 (130)
T 3i8n_A            3 AQDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQS---------------   67 (130)
T ss_dssp             ----CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHT---------------
T ss_pred             cCcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhc---------------
Confidence            457899999994  567899999999999999999999999998 5 899999999999865211               


Q ss_pred             HHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeeh
Q 017536          114 VEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTS  192 (369)
Q Consensus       114 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~  192 (369)
                                              .....+++++|.   ++.++++++++.++++.|.+++.+.+||++ +|+++|++|.
T Consensus        68 ------------------------~~~~~~v~~~m~---~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~  120 (130)
T 3i8n_A           68 ------------------------GSGQKQLGAVMR---PIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTL  120 (130)
T ss_dssp             ------------------------TTTTSBHHHHSE---ECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEH
T ss_pred             ------------------------CCCcCCHHHHhc---CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEH
Confidence                                    012346788885   378999999999999999999999999998 7999999999


Q ss_pred             HHHHHHHH
Q 017536          193 KDILMRVI  200 (369)
Q Consensus       193 ~dll~~~~  200 (369)
                      .|+++.+.
T Consensus       121 ~dil~~l~  128 (130)
T 3i8n_A          121 EDIFEHLV  128 (130)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHc
Confidence            99985443

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.74  E-value=2.1e-17  Score=136.14  Aligned_cols=128  Identities=17%  Similarity=0.163  Sum_probs=109.6

Q ss_pred             CCCccccccccccc---CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHH
Q 017536           36 LNLEETPVSKVMTR---NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIA  111 (369)
Q Consensus        36 ~~~~~~~v~dim~~---~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~  111 (369)
                      ..+..++|+++|.+   +++++.+++++.+|++.|.+++++.+||+| +|+++|+++..|+++......           
T Consensus        19 ~~l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~-----------   87 (165)
T 3fhm_A           19 FQGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQG-----------   87 (165)
T ss_dssp             CSSSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHG-----------
T ss_pred             HhhhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhcC-----------
Confidence            35667899999995   699999999999999999999999999999 789999999999987633210           


Q ss_pred             HHHHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEee
Q 017536          112 AAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILT  191 (369)
Q Consensus       112 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit  191 (369)
                                               ......+++++|.  ++++++++++++.++++.|.+++.+++||+++|+++|+||
T Consensus        88 -------------------------~~~~~~~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~~Giit  140 (165)
T 3fhm_A           88 -------------------------AASLQQSVSVAMT--KNVVRCQHNSTTDQLMEIMTGGRFRHVPVEENGRLAGIIS  140 (165)
T ss_dssp             -------------------------GGGGTSBGGGTSB--SSCCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEE
T ss_pred             -------------------------CccccCCHHHHhc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEE
Confidence                                     0123457899998  6789999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhc
Q 017536          192 SKDILMRVISQ  202 (369)
Q Consensus       192 ~~dll~~~~~~  202 (369)
                      ..|++ +.+..
T Consensus       141 ~~dil-~~~~~  150 (165)
T 3fhm_A          141 IGDVV-KARIG  150 (165)
T ss_dssp             HHHHH-HHTTC
T ss_pred             HHHHH-HHHHH
Confidence            99998 54443

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.74  E-value=2.1e-17  Score=128.80  Aligned_cols=116  Identities=22%  Similarity=0.355  Sum_probs=103.2

Q ss_pred             cccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHH
Q 017536           41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK  119 (369)
Q Consensus        41 ~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (369)
                      ++++++|.++++++++++++.+|++.|.+++++.+||+| +|+++|+++..|++....                      
T Consensus         1 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~----------------------   58 (122)
T 3kpb_A            1 TLVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALA----------------------   58 (122)
T ss_dssp             CBHHHHCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHH----------------------
T ss_pred             CchHHhhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHH----------------------
Confidence            368999999999999999999999999999999999999 799999999999876522                      


Q ss_pred             hcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHH
Q 017536          120 HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMR  198 (369)
Q Consensus       120 ~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~  198 (369)
                                         ....+++++|.  +++.++++++++.++++.|.+++.+++||++ +|+++|++|.+|++ +
T Consensus        59 -------------------~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~-~  116 (122)
T 3kpb_A           59 -------------------QNKKTIEEIMT--RNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDIS-R  116 (122)
T ss_dssp             -------------------TTCCBGGGTSB--SSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHH-H
T ss_pred             -------------------hcccCHHHHhc--CCCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHH-H
Confidence                               11236889998  5788999999999999999999999999999 69999999999998 5


Q ss_pred             HH
Q 017536          199 VI  200 (369)
Q Consensus       199 ~~  200 (369)
                      .+
T Consensus       117 ~l  118 (122)
T 3kpb_A          117 LF  118 (122)
T ss_dssp             HH
T ss_pred             Hh
Confidence            44

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.73  E-value=2.2e-17  Score=135.60  Aligned_cols=128  Identities=10%  Similarity=0.154  Sum_probs=109.0

Q ss_pred             hCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe---CCEEEEEeehHHHHHHHHhcCCC----cccccc
Q 017536          139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQNLP----ADSTLV  211 (369)
Q Consensus       139 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d---~~~~~Giit~~dll~~~~~~~~~----~~~~~v  211 (369)
                      ....+++++|.  ++++++++++++.+|++.|.+++++++||++   +|+++|++|.+|++ +.......    ....++
T Consensus        10 ~~~~~v~dim~--~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~-~~~~~~~~~~~~~~~~~v   86 (164)
T 2pfi_A           10 SHHVRVEHFMN--HSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLV-QALQAEPPSRAPGHQQCL   86 (164)
T ss_dssp             CCSCBHHHHCB--CCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHH-HHHHC-------CCCCBH
T ss_pred             ccCCCHHHHcC--CCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHH-HHHHhhccccCCcccchh
Confidence            34567899998  5788999999999999999999999999998   48999999999997 44433211    124578


Q ss_pred             ccccccC------CceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHhc
Q 017536          212 EKVMTPN------PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVG  270 (369)
Q Consensus       212 ~~~m~~~------~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~~  270 (369)
                      .++|.++      ++++++++++.+|++.|.+++.+++||+| +|+++|+||..||++++.....
T Consensus        87 ~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~l~Giit~~dil~~~~~~~~  150 (164)
T 2pfi_A           87 QDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCVSWVEMKKAISNLTN  150 (164)
T ss_dssp             HHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHHHHHHS
T ss_pred             hhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEHHHHHHHHHhhhC
Confidence            8999876      78999999999999999999999999999 7999999999999998876553

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.73  E-value=4.1e-17  Score=127.65  Aligned_cols=120  Identities=20%  Similarity=0.254  Sum_probs=103.6

Q ss_pred             cccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHh
Q 017536           41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH  120 (369)
Q Consensus        41 ~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (369)
                      ++++++|.++++++++++++.+|++.|.+++++.+||+|+|+++|+++..|+++.....                     
T Consensus         1 m~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~G~it~~dl~~~~~~~---------------------   59 (125)
T 1pbj_A            1 MRVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAIAEG---------------------   59 (125)
T ss_dssp             -CHHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEETTEEEEEEEHHHHHHHHHHT---------------------
T ss_pred             CCHHHhcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEeCCeeEEEEeHHHHHHHHhcC---------------------
Confidence            36889999999999999999999999999999999999999999999999987542210                     


Q ss_pred             cCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHH
Q 017536          121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVI  200 (369)
Q Consensus       121 ~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~  200 (369)
                                      ......+++++|.  +++.++++++++.++++.|.+++.+++||+++|+++|++|.+|++ +.+
T Consensus        60 ----------------~~~~~~~v~~~m~--~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~Gvit~~dl~-~~l  120 (125)
T 1pbj_A           60 ----------------DDLAEVKVWEVME--RDLVTISPRATIKEAAEKMVKNVVWRLLVEEDDEIIGVISATDIL-RAK  120 (125)
T ss_dssp             ----------------CCTTTSBHHHHCB--CGGGEECTTSCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHH-HHH
T ss_pred             ----------------CcccccCHHHHcC--CCCeEECCCCCHHHHHHHHHhcCCcEEEEEECCEEEEEEEHHHHH-HHH
Confidence                            0012456888887  578999999999999999999999999999989999999999998 444

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.73  E-value=1.7e-17  Score=135.14  Aligned_cols=123  Identities=20%  Similarity=0.226  Sum_probs=102.9

Q ss_pred             cccccccccc--CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 017536           40 ETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG  116 (369)
Q Consensus        40 ~~~v~dim~~--~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~  116 (369)
                      ..+++++|++  +++++.+++|+.+|+++|.+++++++||+| +|+++|+++.+|++........               
T Consensus        14 ~~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~~~---------------   78 (156)
T 3k6e_A           14 LGQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDL---------------   78 (156)
T ss_dssp             HTTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTC---------------
T ss_pred             hccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhccc---------------
Confidence            3478999984  789999999999999999999999999998 6999999999999876432100               


Q ss_pred             HHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHH
Q 017536          117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI  195 (369)
Q Consensus       117 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dl  195 (369)
                                        ........+++++|.  +++.++++++++.+|++.|.++++  +||+| +|+++|+||.+|+
T Consensus        79 ------------------~~~~~~~~~v~~im~--~~~~~v~~~~~l~~~~~~m~~~~~--lpVVd~~g~l~GiiT~~Di  136 (156)
T 3k6e_A           79 ------------------SQEIMADTDIVHMTK--TDVAVVSPDFTITEVLHKLVDESF--LPVVDAEGIFQGIITRKSI  136 (156)
T ss_dssp             ------------------CHHHHTTSBGGGTCB--CSCCCBCTTCCHHHHHHHTTTSSE--EEEECTTSBEEEEEEHHHH
T ss_pred             ------------------ccccccccCHHHhhc--CCceecccccHHHHHHHHHHHcCC--eEEEecCCEEEEEEEHHHH
Confidence                              012345667999998  689999999999999999987654  99998 8999999999999


Q ss_pred             HHHH
Q 017536          196 LMRV  199 (369)
Q Consensus       196 l~~~  199 (369)
                      ++.+
T Consensus       137 l~~~  140 (156)
T 3k6e_A          137 LKAV  140 (156)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9544

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.73  E-value=3.9e-18  Score=134.12  Aligned_cols=117  Identities=17%  Similarity=0.186  Sum_probs=100.3

Q ss_pred             ccccccccccC--CeEEeCCCcHHHHHHHHHhCCCeEeeEee-C-CeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 017536           40 ETPVSKVMTRN--PTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE  115 (369)
Q Consensus        40 ~~~v~dim~~~--~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~-~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~  115 (369)
                      +.+++++|+++  ++++++++++.+|++.|.+++++++||++ + |+++|+++..|+++....                 
T Consensus         2 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~-----------------   64 (127)
T 3nqr_A            2 DQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRS-----------------   64 (127)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGST-----------------
T ss_pred             CcCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhc-----------------
Confidence            46899999955  99999999999999999999999999998 4 799999999998753110                 


Q ss_pred             hHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHH
Q 017536          116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKD  194 (369)
Q Consensus       116 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~d  194 (369)
                                            .....+++++|.+   +.++++++++.++++.|.+++.+.+||++ +|+++|++|..|
T Consensus        65 ----------------------~~~~~~v~~~m~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~d  119 (127)
T 3nqr_A           65 ----------------------DAEAFSMDKVLRT---AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIED  119 (127)
T ss_dssp             ----------------------TCCCCCHHHHCBC---CCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHH
T ss_pred             ----------------------cCCCCCHHHHcCC---CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHH
Confidence                                  0124467888863   67899999999999999999999999999 899999999999


Q ss_pred             HHHH
Q 017536          195 ILMR  198 (369)
Q Consensus       195 ll~~  198 (369)
                      +++.
T Consensus       120 ll~~  123 (127)
T 3nqr_A          120 ILEL  123 (127)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9844

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.73  E-value=1.4e-17  Score=131.20  Aligned_cols=118  Identities=16%  Similarity=0.237  Sum_probs=101.7

Q ss_pred             cccccccccc--cCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeC--CeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHH
Q 017536           39 EETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV  114 (369)
Q Consensus        39 ~~~~v~dim~--~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~  114 (369)
                      .+.+++++|+  ++++++++++++.+|++.|.+++++++||+++  |+++|+++..|++....                 
T Consensus         3 ~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~-----------------   65 (129)
T 3jtf_A            3 AERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYML-----------------   65 (129)
T ss_dssp             -CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGT-----------------
T ss_pred             CCCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhc-----------------
Confidence            4678999999  67899999999999999999999999999984  89999999999875310                 


Q ss_pred             HhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehH
Q 017536          115 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSK  193 (369)
Q Consensus       115 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~  193 (369)
                                              ....+++++|.+   ++++++++++.++++.|.+++.+.+||++ +|+++|++|.+
T Consensus        66 ------------------------~~~~~v~~~m~~---~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~  118 (129)
T 3jtf_A           66 ------------------------EPALDIRSLVRP---AVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTME  118 (129)
T ss_dssp             ------------------------CTTSCGGGGCBC---CCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHH
T ss_pred             ------------------------cCCcCHHHHhCC---CeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHH
Confidence                                    013468899963   78999999999999999999999999999 69999999999


Q ss_pred             HHHHHHH
Q 017536          194 DILMRVI  200 (369)
Q Consensus       194 dll~~~~  200 (369)
                      |+++.+.
T Consensus       119 Dil~~l~  125 (129)
T 3jtf_A          119 DVLEQIV  125 (129)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9985554

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.73  E-value=8.7e-18  Score=132.24  Aligned_cols=122  Identities=11%  Similarity=0.180  Sum_probs=105.4

Q ss_pred             cccccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHH
Q 017536           39 EETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE  118 (369)
Q Consensus        39 ~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~  118 (369)
                      ...+++++|.+++.++.+++++.+|++.|.+++++++||+|+|+++|+++..|+++....                    
T Consensus         3 ~s~~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~~--------------------   62 (128)
T 3gby_A            3 ASVTFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDGERYLGMVHLSRLLEGRKG--------------------   62 (128)
T ss_dssp             TTCBGGGGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHTTCSS--------------------
T ss_pred             cceEHHHhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEECCEEEEEEEHHHHHHHHhh--------------------
Confidence            367999999999999999999999999999999999999999999999999998753100                    


Q ss_pred             HhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHH
Q 017536          119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM  197 (369)
Q Consensus       119 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~  197 (369)
                         +               .....+++++|.  +++.++++++++.++++.|.+++.+++||++ +|+++|++|.+|++ 
T Consensus        63 ---~---------------~~~~~~v~~~m~--~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll-  121 (128)
T 3gby_A           63 ---W---------------PTVKEKLGEELL--ETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRIL-  121 (128)
T ss_dssp             ---S---------------CCTTCBCCGGGC--BCCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHH-
T ss_pred             ---C---------------CcccCcHHHHcc--CCCcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHH-
Confidence               0               001245889998  5788999999999999999999999999998 89999999999998 


Q ss_pred             HHHh
Q 017536          198 RVIS  201 (369)
Q Consensus       198 ~~~~  201 (369)
                      +.+.
T Consensus       122 ~~l~  125 (128)
T 3gby_A          122 GFLA  125 (128)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.73  E-value=4.8e-17  Score=134.88  Aligned_cols=139  Identities=16%  Similarity=0.184  Sum_probs=111.0

Q ss_pred             cEEEEEeHHHHHHHHHhccCCCcccccccccc--cCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-C-CeEEEEEehHHH
Q 017536           17 LLCGILTDKDIATRVIARELNLEETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKC   92 (369)
Q Consensus        17 ~~~Givt~~Di~~~~~~~~~~~~~~~v~dim~--~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~-~~~vGiv~~~di   92 (369)
                      .--|.++..+-  ..+.....+...+|+++|+  ++++++++++++.+|++.|.+++++++||++ + |+++|+++.+|+
T Consensus        14 ~~~g~l~~~e~--~~i~~~l~l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl   91 (173)
T 3ocm_A           14 PAVPAFGVEER--NMVSGVLTLAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDL   91 (173)
T ss_dssp             ----CCCHHHH--HHHHHHHHHTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHH
T ss_pred             HhcCCcCHHHH--HHHHHHhccCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHH
Confidence            34588885552  3333444677889999997  4689999999999999999999999999998 4 799999999999


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHH
Q 017536           93 LYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLE  172 (369)
Q Consensus        93 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~  172 (369)
                      +.....                                        ....+++ +|   .+++++++++++.++++.|.+
T Consensus        92 ~~~~~~----------------------------------------~~~~~v~-~~---~~~~~v~~~~~l~~al~~m~~  127 (173)
T 3ocm_A           92 VADLIT----------------------------------------EGRVRRN-RL---RDPIIVHESIGILRLMDTLKR  127 (173)
T ss_dssp             HHHHHH----------------------------------------HSSCCGG-GS---BCCCEECGGGCHHHHHHHHHH
T ss_pred             HHHHhc----------------------------------------CCcchhH-hc---CCCeEECCCCcHHHHHHHHHH
Confidence            875221                                        0133466 44   358899999999999999999


Q ss_pred             cCCceEEEEe-CCEEEEEeehHHHHHHHHh
Q 017536          173 LRLSSAVVTV-ENKPRGILTSKDILMRVIS  201 (369)
Q Consensus       173 ~~~~~~~V~d-~~~~~Giit~~dll~~~~~  201 (369)
                      ++.+.+||++ +|+++|+||..|++..+..
T Consensus       128 ~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~  157 (173)
T 3ocm_A          128 SRGQLVLVADEFGAIEGLVTPIDVFEAIAG  157 (173)
T ss_dssp             STTCCEEEECTTCCEEEEECHHHHHHHHHC
T ss_pred             cCCeEEEEEeCCCCEEEEEeHHHHHHHHhC
Confidence            9999999998 8999999999999955553

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.73  E-value=4.6e-17  Score=128.87  Aligned_cols=121  Identities=15%  Similarity=0.198  Sum_probs=105.4

Q ss_pred             cccccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHH
Q 017536           39 EETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE  118 (369)
Q Consensus        39 ~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~  118 (369)
                      .+.+++++|.++++++.+++++.+|++.|.+++++++||+|+|+++|+++..|++......                   
T Consensus         2 ~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~~~-------------------   62 (133)
T 2ef7_A            2 EEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGKG-------------------   62 (133)
T ss_dssp             CCCBGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHTT-------------------
T ss_pred             CcccHHHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEECCEEEEEEcHHHHHHHHhcC-------------------
Confidence            4678999999999999999999999999999999999999999999999999987642100                   


Q ss_pred             HhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHH
Q 017536          119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM  197 (369)
Q Consensus       119 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~  197 (369)
                                         .....+++++|.  +++.++++++++.++++.|.+++.+++||++ +|+++|++|..|++.
T Consensus        63 -------------------~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~  121 (133)
T 2ef7_A           63 -------------------KSLETKAEEFMT--ASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITR  121 (133)
T ss_dssp             -------------------CCTTCBGGGTSE--ECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHH
T ss_pred             -------------------CCcccCHHHHcC--CCCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHH
Confidence                               012356889997  4788999999999999999999999999999 899999999999984


Q ss_pred             HH
Q 017536          198 RV  199 (369)
Q Consensus       198 ~~  199 (369)
                      .+
T Consensus       122 ~~  123 (133)
T 2ef7_A          122 AI  123 (133)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.72  E-value=4.1e-17  Score=133.14  Aligned_cols=138  Identities=15%  Similarity=0.223  Sum_probs=106.4

Q ss_pred             cccccccc------cCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHH
Q 017536           41 TPVSKVMT------RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV  114 (369)
Q Consensus        41 ~~v~dim~------~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~  114 (369)
                      .+|+++|.      ++++++.+++++.+|++.|.+++++++||.++|+++|+++..|+++.....               
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~---------------   71 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDDIAGIVTERDYARKVVLQ---------------   71 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEESSSSEEEEEEHHHHHHHSGGG---------------
T ss_pred             HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHHhc---------------
Confidence            47999998      456999999999999999999999999997789999999999998652210               


Q ss_pred             HhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHH
Q 017536          115 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKD  194 (369)
Q Consensus       115 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~d  194 (369)
                             +              ......+++++|.  +++.++++++++.++++.|.+++++++||+++|+++|++|.+|
T Consensus        72 -------~--------------~~~~~~~v~~~m~--~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g~~~Giit~~d  128 (157)
T 4fry_A           72 -------E--------------RSSKATRVEEIMT--AKVRYVEPSQSTDECMALMTEHRMRHLPVLDGGKLIGLISIGD  128 (157)
T ss_dssp             -------T--------------CCSSSCBHHHHSB--SSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHH
T ss_pred             -------c--------------CCccccCHHHHcC--CCCcEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHH
Confidence                   0              0013456888998  5789999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCcccccccccccc
Q 017536          195 ILMRVISQNLPADSTLVEKVMTP  217 (369)
Q Consensus       195 ll~~~~~~~~~~~~~~v~~~m~~  217 (369)
                      ++ +.+..........+.+++..
T Consensus       129 il-~~l~~~~~~~~~~~~~~i~~  150 (157)
T 4fry_A          129 LV-KSVIADQQFTISQLEHYIHG  150 (157)
T ss_dssp             HH-HHHHTTCCCCCC--------
T ss_pred             HH-HHHHHHHHhhHHHHHhhccC
Confidence            98 44444333323455555543

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.72  E-value=8.5e-17  Score=131.74  Aligned_cols=128  Identities=20%  Similarity=0.307  Sum_probs=106.1

Q ss_pred             ccccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHH
Q 017536           40 ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE  118 (369)
Q Consensus        40 ~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~  118 (369)
                      ..+|+++|.++++++.+++++.+|++.|.+++++++||+| +|+++|+++..|++..........               
T Consensus         4 ~~~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~---------------   68 (160)
T 2o16_A            4 MIKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRS---------------   68 (160)
T ss_dssp             CCBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC-----------------
T ss_pred             cCcHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHHhhccc---------------
Confidence            5689999999999999999999999999999999999998 799999999999987643211000               


Q ss_pred             HhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHH
Q 017536          119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMR  198 (369)
Q Consensus       119 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~  198 (369)
                                    ..........+++++|.  ++++++++++++.++++.|.+++.+++||+++|+++|+||.+|+++.
T Consensus        69 --------------~~~~~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~lvGiit~~dil~~  132 (160)
T 2o16_A           69 --------------AQGDSLAFETPLFEVMH--TDVTSVAPQAGLKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFVTI  132 (160)
T ss_dssp             ---------------------CCCBHHHHSC--SCEEEBCTTSBHHHHHHHHHHTTCSCEEEEETTEEEEEECHHHHHHH
T ss_pred             --------------ccccchhcccCHHHHhc--CCCeEECCCCCHHHHHHHHHHhCCCEEEEEECCEEEEEEEHHHHHHH
Confidence                          00011234567889998  57999999999999999999999999999999999999999999843

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.72  E-value=5.1e-17  Score=128.24  Aligned_cols=120  Identities=9%  Similarity=0.126  Sum_probs=99.2

Q ss_pred             ccccccccc--CCeEEeCCCcHHHHHHHHHhCCCeEeeEee--CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 017536           41 TPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG  116 (369)
Q Consensus        41 ~~v~dim~~--~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~  116 (369)
                      .+|+++|++  +++++++++++.+|++.|.+++++++||++  +|+++|+++.+|+++.....                 
T Consensus         2 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~-----------------   64 (130)
T 3hf7_A            2 VSVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEK-----------------   64 (130)
T ss_dssp             CBHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSS-----------------
T ss_pred             cCHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhcc-----------------
Confidence            578999974  689999999999999999999999999996  38999999999998752210                 


Q ss_pred             HHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHH
Q 017536          117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI  195 (369)
Q Consensus       117 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dl  195 (369)
                            ..              ....+++++|.   +++++++++++.++++.|.+++.+.+||++ +|+++|++|.+|+
T Consensus        65 ------~~--------------~~~~~v~~~m~---~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Di  121 (130)
T 3hf7_A           65 ------KE--------------FTKEIMLRAAD---EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDI  121 (130)
T ss_dssp             ------SC--------------CCHHHHHHHSB---CCCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHH
T ss_pred             ------Cc--------------cchhhHHHhcc---CCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHH
Confidence                  00              00113566674   478999999999999999999999999998 8999999999999


Q ss_pred             HHHHH
Q 017536          196 LMRVI  200 (369)
Q Consensus       196 l~~~~  200 (369)
                      ++.+.
T Consensus       122 l~~l~  126 (130)
T 3hf7_A          122 LEEIV  126 (130)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            85544

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.72  E-value=7.2e-17  Score=138.55  Aligned_cols=118  Identities=17%  Similarity=0.200  Sum_probs=106.7

Q ss_pred             CCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCC
Q 017536          141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  219 (369)
Q Consensus       141 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~  219 (369)
                      ..+++++|.  ++++++++++++.+|++.|.+++++++||++ +++++|++|.+|+. +..      ...+++++|.+++
T Consensus        12 ~~~~~~~~~--~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~-~~~------~~~~v~~im~~~~   82 (213)
T 1vr9_A           12 HMKVKKWVT--QDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLL-DLD------LDSSVFNKVSLPD   82 (213)
T ss_dssp             -CBGGGGCB--SCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGT-TSC------TTSBSGGGCBCTT
T ss_pred             ccCHHHhhc--CCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHH-hhc------CCCcHHHHccCCC
Confidence            356788898  6899999999999999999999999999999 89999999999996 321      1468999999999


Q ss_pred             ceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHH
Q 017536          220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (369)
Q Consensus       220 ~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~  267 (369)
                      +++++++++.+|++.|.+++++++||+|++|+++|+||..|+++++..
T Consensus        83 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~  130 (213)
T 1vr9_A           83 FFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIE  130 (213)
T ss_dssp             CCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             EEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHH
Confidence            999999999999999999999999999988999999999999997654

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.72  E-value=3.9e-17  Score=132.68  Aligned_cols=122  Identities=20%  Similarity=0.281  Sum_probs=105.8

Q ss_pred             CCccccccccccc--CCeEEeCCCcHHHHHHHHHhCCCeEeeEe-e--CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHH
Q 017536           37 NLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVV-E--NGEVIALLDIAKCLYDAIARMERAAEKGKAIA  111 (369)
Q Consensus        37 ~~~~~~v~dim~~--~~i~v~~~~~l~~a~~~m~~~~~~~lpVv-d--~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~  111 (369)
                      .+...+|+++|++  +++++++++++.+|++.|.+++++++||+ +  +|+++|+++..|++.....             
T Consensus        16 ~l~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~-------------   82 (153)
T 3oco_A           16 EMNDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARI-------------   82 (153)
T ss_dssp             HHHHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHH-------------
T ss_pred             ccCCCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhc-------------
Confidence            4557899999996  89999999999999999999999999999 5  3899999999999865221             


Q ss_pred             HHHHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEe
Q 017536          112 AAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGIL  190 (369)
Q Consensus       112 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Gii  190 (369)
                                                 ....+++++|.   +++++++++++.++++.|.+++.+.+||++ +|+++|+|
T Consensus        83 ---------------------------~~~~~v~~~m~---~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGiv  132 (153)
T 3oco_A           83 ---------------------------DDKAKISTIMR---DIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGII  132 (153)
T ss_dssp             ---------------------------HTTSBGGGTCB---CCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEE
T ss_pred             ---------------------------CCCCcHHHHhC---CCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEe
Confidence                                       01456899993   588999999999999999999999999999 79999999


Q ss_pred             ehHHHHHHHHh
Q 017536          191 TSKDILMRVIS  201 (369)
Q Consensus       191 t~~dll~~~~~  201 (369)
                      |..|+++.+..
T Consensus       133 t~~dil~~l~~  143 (153)
T 3oco_A          133 TDKDVYEELFG  143 (153)
T ss_dssp             CHHHHHHHHHC
T ss_pred             eHHHHHHHHhc
Confidence            99999955543

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.72  E-value=1.1e-16  Score=130.85  Aligned_cols=124  Identities=15%  Similarity=0.241  Sum_probs=105.7

Q ss_pred             CcccccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 017536           38 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG  116 (369)
Q Consensus        38 ~~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~  116 (369)
                      +...+|+++|.+ ++++.+++++.+|++.|.+++++++||+| +|+++|+++..|++......                 
T Consensus        14 l~~~~v~~im~~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~-----------------   75 (159)
T 3fv6_A           14 LKKLQVKDFQSI-PVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQ-----------------   75 (159)
T ss_dssp             HTTCBGGGSCBC-CCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHTSC-----------------
T ss_pred             HhhCCHHHHcCC-CEEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhhcc-----------------
Confidence            456799999987 56999999999999999999999999999 79999999999998652100                 


Q ss_pred             HHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CC---EEEEEeeh
Q 017536          117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-EN---KPRGILTS  192 (369)
Q Consensus       117 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~---~~~Giit~  192 (369)
                                          ......+++++|.+..+++++++++++.++++.|.+++++++||++ +|   +++|+||.
T Consensus        76 --------------------~~~~~~~v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~  135 (159)
T 3fv6_A           76 --------------------QELTSVPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTK  135 (159)
T ss_dssp             --------------------SCTTTCBGGGTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEH
T ss_pred             --------------------CcccCcCHHHHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEH
Confidence                                0123457899998444789999999999999999999999999999 66   99999999


Q ss_pred             HHHHHHH
Q 017536          193 KDILMRV  199 (369)
Q Consensus       193 ~dll~~~  199 (369)
                      +|+++.+
T Consensus       136 ~dil~~l  142 (159)
T 3fv6_A          136 TNMTKIL  142 (159)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998443

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.71  E-value=6e-17  Score=144.86  Aligned_cols=122  Identities=21%  Similarity=0.287  Sum_probs=107.7

Q ss_pred             hCCCCccccccCCCceeEeCCCCcHHHHHHHHHHc-----CCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccc
Q 017536          139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLEL-----RLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVE  212 (369)
Q Consensus       139 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~-----~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~  212 (369)
                      ....+++++|+  ++++++++++++.++++.|.++     +++++||++ +++++|++|.+|++ ..      ....++.
T Consensus       132 ~~~~~v~~iM~--~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll-~~------~~~~~v~  202 (278)
T 2yvy_A          132 YEEDEAGGLMT--PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLI-VA------DPRTRVA  202 (278)
T ss_dssp             SCTTBGGGTCB--SCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHH-HS------CTTCBST
T ss_pred             CCcchHHhhcC--CCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHh-cC------CCCCcHH
Confidence            35678999998  5899999999999999999987     789999999 89999999999997 32      1267899


Q ss_pred             cccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHh
Q 017536          213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  269 (369)
Q Consensus       213 ~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~  269 (369)
                      ++|.++++++++++++.++++.|.+++.+.+||||++|+++|+||..|+++++.++.
T Consensus       203 ~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i~~e~  259 (278)
T 2yvy_A          203 EIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAEA  259 (278)
T ss_dssp             TTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC----
T ss_pred             HHhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999766543

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.71  E-value=8.8e-17  Score=127.62  Aligned_cols=120  Identities=16%  Similarity=0.208  Sum_probs=103.8

Q ss_pred             ccccccc---cCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHH
Q 017536           42 PVSKVMT---RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE  118 (369)
Q Consensus        42 ~v~dim~---~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~  118 (369)
                      +++++|.   ++++++++++++.+|++.|.+++++.+||+|+|+++|+++..|+++.....                   
T Consensus         7 ~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~~~-------------------   67 (135)
T 2rc3_A            7 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLL-------------------   67 (135)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHGGGS-------------------
T ss_pred             eHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEECCEEEEEEehHHHHHHHHHc-------------------
Confidence            8999999   899999999999999999999999999999999999999999987532100                   


Q ss_pred             HhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHH
Q 017536          119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMR  198 (369)
Q Consensus       119 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~  198 (369)
                         +              ......+++++|.  +++.++++++++.++++.|.+++.+++||+++|+++|++|.+|+++.
T Consensus        68 ---~--------------~~~~~~~v~~~m~--~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g~~~Giit~~dll~~  128 (135)
T 2rc3_A           68 ---D--------------KPVKDTQVKEIMT--RQVAYVDLNNTNEDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKD  128 (135)
T ss_dssp             ---S--------------SCGGGSBGGGTSB--CSCCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred             ---C--------------CCcccCCHHHhcc--CCCeEECCCCcHHHHHHHHHHhCCCEEEEEeCCEEEEEEEHHHHHHH
Confidence               0              0012456899998  57899999999999999999999999999998999999999999843


Q ss_pred             H
Q 017536          199 V  199 (369)
Q Consensus       199 ~  199 (369)
                      +
T Consensus       129 ~  129 (135)
T 2rc3_A          129 A  129 (135)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.71  E-value=7.3e-17  Score=144.74  Aligned_cols=121  Identities=21%  Similarity=0.287  Sum_probs=109.4

Q ss_pred             CCCCccccccCCCceeEeCCCCcHHHHHHHHHHc-----CCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCcccccccc
Q 017536          140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLEL-----RLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEK  213 (369)
Q Consensus       140 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~-----~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~  213 (369)
                      ...+++++|+  ++++++++++++.++++.|.++     +++++||++ +++++|+||.+|++ ..      ....++.+
T Consensus       135 ~~~~v~~iM~--~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll-~~------~~~~~v~~  205 (286)
T 2oux_A          135 EDETAGAIMT--TEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLI-VN------DDDTLIAD  205 (286)
T ss_dssp             CTTBHHHHCB--SCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHT-TS------CTTSBHHH
T ss_pred             ChHHHHHhCC--CCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHH-cC------CCCCcHHH
Confidence            4567899998  5899999999999999999998     788999999 89999999999997 21      12678999


Q ss_pred             ccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHh
Q 017536          214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  269 (369)
Q Consensus       214 ~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~  269 (369)
                      +|.++++++++++++.+|++.|.+++.+++||||++|+++|+||..|+++.+..+.
T Consensus       206 im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i~~e~  261 (286)
T 2oux_A          206 ILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDDEA  261 (286)
T ss_dssp             HSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHH
T ss_pred             HcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999776554

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.70  E-value=1.3e-16  Score=130.26  Aligned_cols=140  Identities=18%  Similarity=0.229  Sum_probs=108.8

Q ss_pred             cCCCcccccccccccCCeEEeCCCcHHHHHHHHHhCCCeE-eeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHH
Q 017536           35 ELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRH-LPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAA  113 (369)
Q Consensus        35 ~~~~~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~-lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~  113 (369)
                      +......+++++|+++++++.+++++.+|++.|.+++++. +||+|+++++|+++..|++......+   .         
T Consensus        10 ~~~~~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~~~vGivt~~dl~~~~~~~~---~---------   77 (157)
T 1o50_A           10 HHHMKVKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHF---F---------   77 (157)
T ss_dssp             CTTCBHHHHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHH---H---------
T ss_pred             hhhhccccHhhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEECCEEEEEEEHHHHHHHHhhhH---H---------
Confidence            3456678999999999999999999999999999999999 99999559999999999987643211   0         


Q ss_pred             HHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeeh
Q 017536          114 VEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTS  192 (369)
Q Consensus       114 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~  192 (369)
                              . .......+.. ........+++++|.  + ++++++++++.++++.|.+++.+++||++ +|+++|+||.
T Consensus        78 --------~-~~~~~~~~~~-~~~~~~~~~v~~im~--~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~  144 (157)
T 1o50_A           78 --------G-FIPKEELIRS-SMKRLIAKNASEIML--D-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNS  144 (157)
T ss_dssp             --------C-CCC--------CCCCCSSCBHHHHCB--C-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEH
T ss_pred             --------h-hhccHHHHHH-HHHHHcCCcHHHHcC--C-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEH
Confidence                    0 0000000000 000123456889998  5 89999999999999999999999999999 8999999999


Q ss_pred             HHHHHHH
Q 017536          193 KDILMRV  199 (369)
Q Consensus       193 ~dll~~~  199 (369)
                      +|+++.+
T Consensus       145 ~dll~~l  151 (157)
T 1o50_A          145 LEILLAL  151 (157)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998443

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.70  E-value=1.4e-16  Score=126.87  Aligned_cols=125  Identities=22%  Similarity=0.268  Sum_probs=107.0

Q ss_pred             CCcccccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 017536           37 NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE  115 (369)
Q Consensus        37 ~~~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~  115 (369)
                      .+...+++++|.++++++++++++.+|++.|.+++++++||+| +|+++|+++..|+++..+..                
T Consensus         3 ~l~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~----------------   66 (138)
T 2yzi_A            3 MDMKAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVP----------------   66 (138)
T ss_dssp             CCTTSBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTT----------------
T ss_pred             chhhhhHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhc----------------
Confidence            4567899999999999999999999999999999999999999 79999999999987431100                


Q ss_pred             hHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHH
Q 017536          116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKD  194 (369)
Q Consensus       116 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~d  194 (369)
                            +               .....+++++|.  +++.++++++++.++++.|.+++.+++ |++ +|+++|++|.+|
T Consensus        67 ------~---------------~~~~~~v~~~m~--~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~d  122 (138)
T 2yzi_A           67 ------G---------------LPYDIPVERIMT--RNLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSD  122 (138)
T ss_dssp             ------C---------------CCTTSBGGGTCB--CSCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHH
T ss_pred             ------C---------------CcccCCHHHHhh--CCCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHH
Confidence                  0               012456899998  578999999999999999999999999 998 999999999999


Q ss_pred             HHHHHHhc
Q 017536          195 ILMRVISQ  202 (369)
Q Consensus       195 ll~~~~~~  202 (369)
                      ++ +.+..
T Consensus       123 il-~~~~~  129 (138)
T 2yzi_A          123 LL-EASRR  129 (138)
T ss_dssp             HH-HHHHC
T ss_pred             HH-HHHHH
Confidence            98 44443

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.70  E-value=2.5e-17  Score=131.11  Aligned_cols=118  Identities=13%  Similarity=0.163  Sum_probs=101.1

Q ss_pred             ccccccccc--cCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-C-CeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 017536           40 ETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE  115 (369)
Q Consensus        40 ~~~v~dim~--~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~-~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~  115 (369)
                      +.+|+++|+  ++++++++++++.+|++.|.+++++++||++ + |+++|+++..|++.....                 
T Consensus         2 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~-----------------   64 (136)
T 3lfr_A            2 DLQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILK-----------------   64 (136)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGS-----------------
T ss_pred             CCChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHh-----------------
Confidence            468999999  6789999999999999999999999999998 4 799999999998754110                 


Q ss_pred             hHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHH
Q 017536          116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKD  194 (369)
Q Consensus       116 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~d  194 (369)
                                           ......+++++|.+   ++++++++++.++++.|.+++.+.+||++ +|+++|++|.+|
T Consensus        65 ---------------------~~~~~~~v~~~m~~---~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~D  120 (136)
T 3lfr_A           65 ---------------------ADGDSDDVKKLLRP---ATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIED  120 (136)
T ss_dssp             ---------------------SSGGGCCGGGTCBC---CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHH
T ss_pred             ---------------------ccCCCcCHHHHcCC---CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHH
Confidence                                 00123468899963   88999999999999999999999999998 799999999999


Q ss_pred             HHHH
Q 017536          195 ILMR  198 (369)
Q Consensus       195 ll~~  198 (369)
                      +++.
T Consensus       121 il~~  124 (136)
T 3lfr_A          121 VLEQ  124 (136)
T ss_dssp             HHTT
T ss_pred             HHHH
Confidence            9843

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.70  E-value=1.1e-16  Score=136.41  Aligned_cols=119  Identities=11%  Similarity=0.056  Sum_probs=105.8

Q ss_pred             CCCcccccccccccCCeEEeCCCcHHHHHHHHHhC---CCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHH
Q 017536           36 LNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQG---KFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIA  111 (369)
Q Consensus        36 ~~~~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~---~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~  111 (369)
                      ..+.+.+++++|+++++++++++|+.+|++.|.++   +++.+||+| +|+++|+++.+|++..                
T Consensus        49 l~~~~~~v~~iM~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~----------------  112 (205)
T 3kxr_A           49 DQYSENEIGRYTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKH----------------  112 (205)
T ss_dssp             HHSCTTCGGGGCBCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTTS----------------
T ss_pred             hCCCcchHHhhccCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHhC----------------
Confidence            35667899999999999999999999999999987   899999999 7999999999998632                


Q ss_pred             HHHHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEe
Q 017536          112 AAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGIL  190 (369)
Q Consensus       112 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Gii  190 (369)
                                                 ....+++++|.  ++++++++++++.++++.|.+++.+.+||+| +|+++|+|
T Consensus       113 ---------------------------~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiI  163 (205)
T 3kxr_A          113 ---------------------------EPHEPLISLLS--EDSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRV  163 (205)
T ss_dssp             ---------------------------CTTSBGGGGCC--SSCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEE
T ss_pred             ---------------------------CCcchHHHHhc--CCCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEE
Confidence                                       12356899998  5789999999999999999999999999999 89999999


Q ss_pred             ehHHHHHHH
Q 017536          191 TSKDILMRV  199 (369)
Q Consensus       191 t~~dll~~~  199 (369)
                      |..|++..+
T Consensus       164 T~~Dil~~i  172 (205)
T 3kxr_A          164 TLRAATALV  172 (205)
T ss_dssp             EHHHHHHHH
T ss_pred             EHHHHHHHH
Confidence            999998443

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.70  E-value=1.7e-16  Score=128.30  Aligned_cols=117  Identities=15%  Similarity=0.193  Sum_probs=102.2

Q ss_pred             ccccccccc--CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhH
Q 017536           41 TPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV  117 (369)
Q Consensus        41 ~~v~dim~~--~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~  117 (369)
                      .+++++|.+  +++++.+++++.+|++.|.+++++++||+| +|+++|+++..|++.....                   
T Consensus        28 ~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~-------------------   88 (149)
T 3k2v_A           28 LRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDT-------------------   88 (149)
T ss_dssp             SBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCS-------------------
T ss_pred             cCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhc-------------------
Confidence            589999998  999999999999999999999999999999 7999999999999864210                   


Q ss_pred             HHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHH
Q 017536          118 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (369)
Q Consensus       118 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll  196 (369)
                          +.              .....+++++|.  ++++++++++++.++++.|.+++.+++||+++++++|+||.+|++
T Consensus        89 ----~~--------------~~~~~~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~Giit~~dil  147 (149)
T 3k2v_A           89 ----GV--------------DMRDASIADVMT--RGGIRIRPGTLAVDALNLMQSRHITCVLVADGDHLLGVVHMHDLL  147 (149)
T ss_dssp             ----SS--------------CCTTCBHHHHSE--ESCCEECTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHT
T ss_pred             ----CC--------------CcccCcHHHHcC--CCCeEECCCCCHHHHHHHHHHcCCCEEEEecCCEEEEEEEHHHhh
Confidence                00              013456888887  568899999999999999999999999999966999999999986

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.69  E-value=8.3e-18  Score=137.20  Aligned_cols=118  Identities=18%  Similarity=0.230  Sum_probs=102.1

Q ss_pred             CCCccccccccccc--CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-C-CeEEEEEehHHHHHHHHHHHHHHHhhhhHHH
Q 017536           36 LNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIA  111 (369)
Q Consensus        36 ~~~~~~~v~dim~~--~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~-~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~  111 (369)
                      ..+...+|+++|++  +++++++++++.+|++.|.+++++++||++ + ++++|+++..|++.....             
T Consensus        33 ~~l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~-------------   99 (156)
T 3oi8_A           33 LDFSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFN-------------   99 (156)
T ss_dssp             HHHTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSC-------------
T ss_pred             hccCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHc-------------
Confidence            35667899999996  789999999999999999999999999998 4 599999999998753110             


Q ss_pred             HHHHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEe
Q 017536          112 AAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGIL  190 (369)
Q Consensus       112 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Gii  190 (369)
                                                 ....+++++|.+   ++++++++++.++++.|.+++.+.+||+| +|+++|++
T Consensus       100 ---------------------------~~~~~v~~im~~---~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Giv  149 (156)
T 3oi8_A          100 ---------------------------PEQFHLKSILRP---AVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLV  149 (156)
T ss_dssp             ---------------------------GGGCCHHHHCBC---CCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEE
T ss_pred             ---------------------------CCcccHHHHcCC---CEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEE
Confidence                                       023457888863   88999999999999999999999999998 79999999


Q ss_pred             ehHHHH
Q 017536          191 TSKDIL  196 (369)
Q Consensus       191 t~~dll  196 (369)
                      |.+|++
T Consensus       150 t~~Dil  155 (156)
T 3oi8_A          150 TFEDII  155 (156)
T ss_dssp             EHHHHC
T ss_pred             EHHHhc
Confidence            999985

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.69  E-value=4.4e-16  Score=124.53  Aligned_cols=116  Identities=16%  Similarity=0.212  Sum_probs=101.6

Q ss_pred             ccccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CC--eEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 017536           40 ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NG--EVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG  116 (369)
Q Consensus        40 ~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~--~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~  116 (369)
                      ..+++++|.++++++.+++++.+|++.|.+++++++||+| ++  +++|+++..|++......                 
T Consensus         4 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~~-----------------   66 (141)
T 2rih_A            4 AIRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQR-----------------   66 (141)
T ss_dssp             -CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTT-----------------
T ss_pred             ceEHHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhcC-----------------
Confidence            4689999999999999999999999999999999999999 46  999999999987652100                 


Q ss_pred             HHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHH
Q 017536          117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI  195 (369)
Q Consensus       117 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dl  195 (369)
                                           .....+++++|.  +++++++++ ++.++++.|.+++.+++||++ +|+++|++|.+|+
T Consensus        67 ---------------------~~~~~~v~~~m~--~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dl  122 (141)
T 2rih_A           67 ---------------------LDLDGPAMPIAN--SPITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDL  122 (141)
T ss_dssp             ---------------------CCTTSBSGGGCB--CCCEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHH
T ss_pred             ---------------------CCCCCCHHHHcC--CCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHH
Confidence                                 012356899998  579999999 999999999999999999999 8999999999999


Q ss_pred             H
Q 017536          196 L  196 (369)
Q Consensus       196 l  196 (369)
                      +
T Consensus       123 l  123 (141)
T 2rih_A          123 C  123 (141)
T ss_dssp             H
T ss_pred             H
Confidence            7

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.69  E-value=3.2e-16  Score=128.62  Aligned_cols=131  Identities=18%  Similarity=0.190  Sum_probs=103.7

Q ss_pred             CCcccccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee---CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHH
Q 017536           37 NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE---NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAA  113 (369)
Q Consensus        37 ~~~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd---~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~  113 (369)
                      .....+++++|.++++++.+++++.+|++.|.+++++++||+|   +|+++|+++..|++.........           
T Consensus         9 ~~~~~~v~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~-----------   77 (164)
T 2pfi_A            9 GSHHVRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPS-----------   77 (164)
T ss_dssp             -CCSCBHHHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC---------------
T ss_pred             cccCCCHHHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccc-----------
Confidence            4557899999999999999999999999999999999999998   48999999999987653211000           


Q ss_pred             HHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCC----CceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEE
Q 017536          114 VEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEK----SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGI  189 (369)
Q Consensus       114 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~----~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Gi  189 (369)
                                            .......++.++|.+.    ..+.++++++++.++++.|.+++.+++||+++|+++|+
T Consensus        78 ----------------------~~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g~l~Gi  135 (164)
T 2pfi_A           78 ----------------------RAPGHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSRGRAVGC  135 (164)
T ss_dssp             -------------------------CCCCBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEETTEEEEE
T ss_pred             ----------------------cCCcccchhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEECCEEEEE
Confidence                                  0001223455666531    11688999999999999999999999999999999999


Q ss_pred             eehHHHHHHHH
Q 017536          190 LTSKDILMRVI  200 (369)
Q Consensus       190 it~~dll~~~~  200 (369)
                      ||.+|+++.+.
T Consensus       136 it~~dil~~~~  146 (164)
T 2pfi_A          136 VSWVEMKKAIS  146 (164)
T ss_dssp             EEHHHHHHHHH
T ss_pred             EEHHHHHHHHH
Confidence            99999984443

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.68  E-value=2.1e-16  Score=127.90  Aligned_cols=135  Identities=18%  Similarity=0.223  Sum_probs=104.5

Q ss_pred             cccccccccc--CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 017536           40 ETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG  116 (369)
Q Consensus        40 ~~~v~dim~~--~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~  116 (369)
                      ..+++++|.+  +++++.+++++.+|++.|.+++++++||+| +|+++|+++..|++........     ..    .   
T Consensus         4 ~~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~~-----~~----~---   71 (152)
T 4gqw_A            4 VYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSGDST-----WK----T---   71 (152)
T ss_dssp             CSBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTCC----C-----CH----H---
T ss_pred             eEEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHhhcccCc-----cc----c---
Confidence            5789999998  899999999999999999999999999999 6899999999998753110000     00    0   


Q ss_pred             HHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHH
Q 017536          117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI  195 (369)
Q Consensus       117 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dl  195 (369)
                                  ..............+++++|.  ++++++++++++.++++.|.+++.+++||++ +|+++|+||.+|+
T Consensus        72 ------------~~~~~~~~~~~~~~~v~~~m~--~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~di  137 (152)
T 4gqw_A           72 ------------FNAVQKLLSKTNGKLVGDLMT--PAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNV  137 (152)
T ss_dssp             ------------HHHHHTC-----CCBHHHHSE--ESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHH
T ss_pred             ------------hHHHHHHHHHhccccHHHhcC--CCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHH
Confidence                        000000111233467899998  4688899999999999999999999999999 8999999999999


Q ss_pred             HHHHH
Q 017536          196 LMRVI  200 (369)
Q Consensus       196 l~~~~  200 (369)
                      ++.+.
T Consensus       138 l~~~~  142 (152)
T 4gqw_A          138 VRAAL  142 (152)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            84443

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.68  E-value=3.3e-16  Score=124.71  Aligned_cols=121  Identities=26%  Similarity=0.352  Sum_probs=103.6

Q ss_pred             CcccccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHH-HHHHHHHHHHHHhhhhHHHHHHH
Q 017536           38 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKC-LYDAIARMERAAEKGKAIAAAVE  115 (369)
Q Consensus        38 ~~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~di-l~~~~~~~~~~~~~~~~~~~~~~  115 (369)
                      +.+.+++++|.++++++.+++++.+|++.|.+++++++||+| +|+++|+++..++ +.....                 
T Consensus         5 l~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~-----------------   67 (138)
T 2p9m_A            5 LKNIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRD-----------------   67 (138)
T ss_dssp             CTTCBGGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTTT-----------------
T ss_pred             cccCCHHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHhh-----------------
Confidence            456799999999999999999999999999999999999998 7999999999998 653110                 


Q ss_pred             hHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcC-----CceEEEEe-CCEEEEE
Q 017536          116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELR-----LSSAVVTV-ENKPRGI  189 (369)
Q Consensus       116 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~-----~~~~~V~d-~~~~~Gi  189 (369)
                                           ......+++++|.  +++.++++++++.++++.|.+++     .+++||++ +|+++|+
T Consensus        68 ---------------------~~~~~~~v~~~m~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Gi  124 (138)
T 2p9m_A           68 ---------------------KYTLETTIGDVMT--KDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGI  124 (138)
T ss_dssp             ---------------------CCCSSCBHHHHSC--SSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEE
T ss_pred             ---------------------cccCCcCHHHHhC--CCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEE
Confidence                                 0022456788887  57889999999999999999999     99999999 8999999


Q ss_pred             eehHHHHHH
Q 017536          190 LTSKDILMR  198 (369)
Q Consensus       190 it~~dll~~  198 (369)
                      +|.+|+++.
T Consensus       125 it~~dll~~  133 (138)
T 2p9m_A          125 ISDGDIIRT  133 (138)
T ss_dssp             EEHHHHHHH
T ss_pred             EEHHHHHHH
Confidence            999999843

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.68  E-value=2e-16  Score=127.91  Aligned_cols=127  Identities=17%  Similarity=0.197  Sum_probs=104.2

Q ss_pred             Ccccccccccc--cCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHH
Q 017536           38 LEETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV  114 (369)
Q Consensus        38 ~~~~~v~dim~--~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~  114 (369)
                      +...+++++|.  ++++++.+++++.+|++.|.+++++++||+| +|+++|+++..|++......               
T Consensus        12 l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~---------------   76 (150)
T 3lqn_A           12 FQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGL---------------   76 (150)
T ss_dssp             HHHCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTBCS---------------
T ss_pred             hhcCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHHhh---------------
Confidence            34679999999  4699999999999999999999999999998 79999999999998652100               


Q ss_pred             HhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehH
Q 017536          115 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSK  193 (369)
Q Consensus       115 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~  193 (369)
                              .. ..        .......+++++|.  +++.++++++++.++++.|.++++  +||++ +|+++|+||..
T Consensus        77 --------~~-~~--------~~~~~~~~v~~~m~--~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~  135 (150)
T 3lqn_A           77 --------ER-IE--------FERLEEMKVEQVMK--QDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRR  135 (150)
T ss_dssp             --------SS-BC--------GGGGGGCBGGGTCB--SSCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHH
T ss_pred             --------cc-cc--------hhHHhcCCHHHHhc--CCCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHH
Confidence                    00 00        00123457899998  578999999999999999999886  99999 89999999999


Q ss_pred             HHHHHHH
Q 017536          194 DILMRVI  200 (369)
Q Consensus       194 dll~~~~  200 (369)
                      |+++.+.
T Consensus       136 dil~~l~  142 (150)
T 3lqn_A          136 AILKLLN  142 (150)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9984443

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.67  E-value=3.4e-16  Score=136.74  Aligned_cols=126  Identities=15%  Similarity=0.095  Sum_probs=103.8

Q ss_pred             CCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeC---CEEEEEeehHHHHHHHHhc---CCC--------
Q 017536          140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVE---NKPRGILTSKDILMRVISQ---NLP--------  205 (369)
Q Consensus       140 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~---~~~~Giit~~dll~~~~~~---~~~--------  205 (369)
                      ...+++++|+  ++++++.+++++.+|.++|.+++++++||+++   ++++|+||.+|+++.+...   ...        
T Consensus        11 ~~~~v~diMt--~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~~~   88 (250)
T 2d4z_A           11 YNIQVGDIMV--RDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAAEA   88 (250)
T ss_dssp             SSCBTTSSSB--SSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCCCCB
T ss_pred             CCCChHHhcC--CCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhhhcc
Confidence            4567999998  68999999999999999999999999999983   5899999999998432211   000        


Q ss_pred             ----------------------c---------------------------------------------------------
Q 017536          206 ----------------------A---------------------------------------------------------  206 (369)
Q Consensus       206 ----------------------~---------------------------------------------------------  206 (369)
                                            .                                                         
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (250)
T 2d4z_A           89 DEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRFE  168 (250)
T ss_dssp             CCC---------------------------------------------------------------------------CC
T ss_pred             cccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCcccc
Confidence                                  0                                                         


Q ss_pred             ---------------ccccc--c-cccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHH
Q 017536          207 ---------------DSTLV--E-KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (369)
Q Consensus       207 ---------------~~~~v--~-~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~  268 (369)
                                     ...++  . .+|.+.|+++.+++++.++..+|...+++++||++ .|+++||||+.||++++.+.
T Consensus       169 ~~i~~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~-~GrLVGIVTrkDl~kai~~~  247 (250)
T 2d4z_A          169 EMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIEGS  247 (250)
T ss_dssp             SCCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC-
T ss_pred             cccChhhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE-CCEEEEEEEHHHHHHHHHHH
Confidence                           01222  2 36889999999999999999999999999999997 79999999999999987643

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.67  E-value=2.3e-15  Score=131.49  Aligned_cols=161  Identities=17%  Similarity=0.166  Sum_probs=110.3

Q ss_pred             CCcccccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeC---CeEEEEEehHHHHHHHHHHHHHHHhh-------
Q 017536           37 NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN---GEVIALLDIAKCLYDAIARMERAAEK-------  106 (369)
Q Consensus        37 ~~~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~~~vGiv~~~dil~~~~~~~~~~~~~-------  106 (369)
                      ....++|+|+|+++++++.+++++.+|.++|.+++++++||+|+   ++++|+|+..|+++.+..........       
T Consensus         9 ~~~~~~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~~~   88 (250)
T 2d4z_A            9 NKYNIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAAEA   88 (250)
T ss_dssp             CCSSCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCCCCB
T ss_pred             ccCCCChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhhhcc
Confidence            44578999999999999999999999999999999999999984   58999999999998654432111000       


Q ss_pred             ----------------hhHHHHHHHhHH----HhcC-------------------------------------------C
Q 017536          107 ----------------GKAIAAAVEGVE----KHWG-------------------------------------------T  123 (369)
Q Consensus       107 ----------------~~~~~~~~~~~~----~~~g-------------------------------------------~  123 (369)
                                      ............    .+.|                                           .
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (250)
T 2d4z_A           89 DEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRFE  168 (250)
T ss_dssp             CCC---------------------------------------------------------------------------CC
T ss_pred             cccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCcccc
Confidence                            000000000000    0000                                           0


Q ss_pred             CCCChhhHHHHHHHHhCCCCc--c-ccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHH
Q 017536          124 SISGPNTFIETLRERMFRPSL--S-TIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVI  200 (369)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~v--~-~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~  200 (369)
                      ....+.. .....+.....++  + .+|.  +.++++.+++++.++..+|.+.|.+++||++.|+++||||.+|++ +++
T Consensus       169 ~~i~~~~-~~~~~~~~l~~~Vdl~~~~md--~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~~GrLVGIVTrkDl~-kai  244 (250)
T 2d4z_A          169 EMLTLEE-IYRWEQREKNVVVNFETCRID--QSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSMGKLVGVVALAEIQ-AAI  244 (250)
T ss_dssp             SCCBHHH-HHHHHHHHTTCBCCTTSSCEE--CCSCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHH-HHH
T ss_pred             cccChhh-hhhHHHHhcCceecccccccc--CCCeEECCCCcHHHHHHHHHHhCCeEEEEEECCEEEEEEEHHHHH-HHH
Confidence            0000001 1111122233445  3 3687  679999999999999999999999999999999999999999998 555


Q ss_pred             h
Q 017536          201 S  201 (369)
Q Consensus       201 ~  201 (369)
                      .
T Consensus       245 ~  245 (250)
T 2d4z_A          245 E  245 (250)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.67  E-value=6.6e-16  Score=129.38  Aligned_cols=148  Identities=16%  Similarity=0.155  Sum_probs=107.2

Q ss_pred             CcccccccccccC----CeEE--eCCCcHHHHHHHHHhCCCeEeeEe--e-CCeEEEEEehHHHHHHHHHHHHHHHhhhh
Q 017536           38 LEETPVSKVMTRN----PTFV--LSDTLAVEALQKMVQGKFRHLPVV--E-NGEVIALLDIAKCLYDAIARMERAAEKGK  108 (369)
Q Consensus        38 ~~~~~v~dim~~~----~i~v--~~~~~l~~a~~~m~~~~~~~lpVv--d-~~~~vGiv~~~dil~~~~~~~~~~~~~~~  108 (369)
                      ....+|+++|+++    ++++  .+++++.+|++.|.+++++++||+  | +|+++|+++..|++..........   . 
T Consensus         8 ~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~---~-   83 (185)
T 2j9l_A            8 AHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQ---D-   83 (185)
T ss_dssp             -CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSC---S-
T ss_pred             hccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccC---C-
Confidence            3467999999987    7888  999999999999999999999999  5 699999999999987643211000   0 


Q ss_pred             HHHHHHHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEE
Q 017536          109 AIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRG  188 (369)
Q Consensus       109 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~G  188 (369)
                         .........+... ....     ........+++++|.  ++++++++++++.++++.|.+++.+++||+++|+++|
T Consensus        84 ---~~~~~~~~~~~~~-~~~~-----~~~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~g~~vG  152 (185)
T 2j9l_A           84 ---GVVSTSIIYFTEH-SPPL-----PPYTPPTLKLRNILD--LSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLG  152 (185)
T ss_dssp             ---CCCTTCEEECSSS-CCCC-----CTTCCCCEECGGGEE--SSCCEEETTSBHHHHHHHHHHHTCSEEEEEETTEEEE
T ss_pred             ---CccccceeecccC-Cccc-----ccccccCccHHHhhC--cCCeEeCCCCCHHHHHHHHHhCCCcEEEEEECCEEEE
Confidence               0000000000000 0000     000123456889997  5789999999999999999999999999999999999


Q ss_pred             EeehHHHHHHHH
Q 017536          189 ILTSKDILMRVI  200 (369)
Q Consensus       189 iit~~dll~~~~  200 (369)
                      +||.+|+++.+.
T Consensus       153 iit~~dll~~l~  164 (185)
T 2j9l_A          153 IITKKDVLKHIA  164 (185)
T ss_dssp             EEEHHHHHHHHH
T ss_pred             EEEHHHHHHHHH
Confidence            999999984444

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.66  E-value=5.4e-16  Score=124.31  Aligned_cols=126  Identities=19%  Similarity=0.274  Sum_probs=102.0

Q ss_pred             ccccccc---ccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHH
Q 017536           39 EETPVSK---VMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV  114 (369)
Q Consensus        39 ~~~~v~d---im~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~  114 (369)
                      .+.++++   +|.++++++.+++++.+|++.|.+++++.+||+| +|+++|+++..|++.......              
T Consensus         6 ~~~~v~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~--------------   71 (144)
T 2nyc_A            6 LKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGI--------------   71 (144)
T ss_dssp             GGSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC---------------
T ss_pred             hhcchhhcCCCCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhcccc--------------
Confidence            3567888   8889999999999999999999999999999998 799999999999876522100              


Q ss_pred             HhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCC----ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEE
Q 017536          115 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKS----KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGI  189 (369)
Q Consensus       115 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~----~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Gi  189 (369)
                                            ......+++++|.+..    ++.++++++++.++++.|.+++.+++||++ +|+++|+
T Consensus        72 ----------------------~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Gi  129 (144)
T 2nyc_A           72 ----------------------YNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGV  129 (144)
T ss_dssp             -------------------------CCSBHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEE
T ss_pred             ----------------------cccCCccHHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEE
Confidence                                  0012345777776321    588999999999999999999999999999 8999999


Q ss_pred             eehHHHHHHHH
Q 017536          190 LTSKDILMRVI  200 (369)
Q Consensus       190 it~~dll~~~~  200 (369)
                      +|.+|+++.+.
T Consensus       130 it~~dil~~l~  140 (144)
T 2nyc_A          130 LTLSDILKYIL  140 (144)
T ss_dssp             EEHHHHHHHHH
T ss_pred             EEHHHHHHHHH
Confidence            99999984443

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.66  E-value=2.6e-16  Score=131.19  Aligned_cols=149  Identities=17%  Similarity=0.195  Sum_probs=107.7

Q ss_pred             cccccccccc--CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 017536           40 ETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG  116 (369)
Q Consensus        40 ~~~v~dim~~--~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~  116 (369)
                      ..+|+++|.+  +++++.+++++.+|+++|.+++++++||+| +|+++|+++..|+++..........     .....  
T Consensus         3 ~~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~-----~~~~~--   75 (180)
T 3sl7_A            3 GYTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQN-----DTNLF--   75 (180)
T ss_dssp             CCBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC---------------------
T ss_pred             ceeHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhhhhhccccCC-----ccccc--
Confidence            3689999998  899999999999999999999999999999 7999999999999753211000000     00000  


Q ss_pred             HHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHH
Q 017536          117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI  195 (369)
Q Consensus       117 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dl  195 (369)
                        ...+.... ...............+++++|.  ++++++++++++.++++.|.+++++++||++ +|+++|+||.+|+
T Consensus        76 --~~~~~~~~-~~~~~~~~~~~~~~~~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~di  150 (180)
T 3sl7_A           76 --PDVDSTWK-TFNELQKLISKTYGKVVGDLMT--PSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNV  150 (180)
T ss_dssp             -------CCC-SHHHHHHHHHTTTTCBHHHHSE--ESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHH
T ss_pred             --ccccchhh-hhHHHHHHHhccccccHHHHhC--CCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHH
Confidence              00000000 0111112222345667999998  5688999999999999999999999999999 8999999999999


Q ss_pred             HHHHH
Q 017536          196 LMRVI  200 (369)
Q Consensus       196 l~~~~  200 (369)
                      ++.+.
T Consensus       151 l~~~~  155 (180)
T 3sl7_A          151 VRAAL  155 (180)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            85444

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.66  E-value=3.2e-16  Score=123.97  Aligned_cols=119  Identities=18%  Similarity=0.200  Sum_probs=101.5

Q ss_pred             ccccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHH
Q 017536           40 ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE  118 (369)
Q Consensus        40 ~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~  118 (369)
                      ..+++++|.++++++.+++++.+|++.|.+++++++||+| +|+++|+++..|++...+..                   
T Consensus         7 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~-------------------   67 (133)
T 1y5h_A            7 MTTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAA-------------------   67 (133)
T ss_dssp             -CCHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGG-------------------
T ss_pred             hcCHHHHhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhc-------------------
Confidence            3589999999999999999999999999999999999997 79999999999987421100                   


Q ss_pred             HhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHH
Q 017536          119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (369)
Q Consensus       119 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll  196 (369)
                         +.              .....+++++|.  ++++++++++++.++++.|.+++.+++||+++|+++|++|.+|++
T Consensus        68 ---~~--------------~~~~~~v~~~m~--~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~g~~~Giit~~dil  126 (133)
T 1y5h_A           68 ---GL--------------DPNTATAGELAR--DSIYYVDANASIQEMLNVMEEHQVRRVPVISEHRLVGIVTEADIA  126 (133)
T ss_dssp             ---TC--------------CTTTSBHHHHHT--TCCCCEETTCCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHH
T ss_pred             ---CC--------------CccccCHHHHhc--CCCEEECCCCCHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHH
Confidence               00              012356788887  578899999999999999999999999999989999999999998

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.66  E-value=1.1e-15  Score=124.44  Aligned_cols=128  Identities=13%  Similarity=0.218  Sum_probs=103.6

Q ss_pred             CCccccccccccc--CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHH
Q 017536           37 NLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAA  113 (369)
Q Consensus        37 ~~~~~~v~dim~~--~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~  113 (369)
                      .+...+++++|.+  +++++.+++++.+|++.|.+++++++||+| +|+++|+++..|++......              
T Consensus         7 ~l~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~--------------   72 (157)
T 2emq_A            7 EFMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILGL--------------   72 (157)
T ss_dssp             ---CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSBCS--------------
T ss_pred             hHhhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHhcc--------------
Confidence            4557899999997  899999999999999999999999999999 79999999999987641100              


Q ss_pred             HHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeeh
Q 017536          114 VEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTS  192 (369)
Q Consensus       114 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~  192 (369)
                               ..    ..     .......+++++|.  ++++++++++++.++++.|.++++  +||++ +|+++|+||.
T Consensus        73 ---------~~----~~-----~~~~~~~~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~  130 (157)
T 2emq_A           73 ---------ER----IE-----FERLETMKVEEVMN--RNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTR  130 (157)
T ss_dssp             ---------SS----BC-----GGGGGTCBGGGTCB--CCCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEH
T ss_pred             ---------cc----cc-----hHHhcCCcHHHHhC--CCCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEH
Confidence                     00    00     00123457899998  578999999999999999999987  99999 7999999999


Q ss_pred             HHHHHHHH
Q 017536          193 KDILMRVI  200 (369)
Q Consensus       193 ~dll~~~~  200 (369)
                      +|+++.+.
T Consensus       131 ~dil~~~~  138 (157)
T 2emq_A          131 REVLKQLN  138 (157)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99984443

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.64  E-value=1.1e-15  Score=146.06  Aligned_cols=120  Identities=22%  Similarity=0.292  Sum_probs=108.4

Q ss_pred             CCCCccccccCCCceeEeCCCCcHHHHHHHHHHc-----CCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCcccccccc
Q 017536          140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLEL-----RLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEK  213 (369)
Q Consensus       140 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~-----~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~  213 (369)
                      ...+++++|+  +++++++++.++.++++.|.++     +++++||+| +++++|++|.+|++ ..      ..+.++++
T Consensus       153 ~~~~v~~iM~--~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll-~~------~~~~~v~d  223 (473)
T 2zy9_A          153 EEDEAGGLMT--PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLI-VA------DPRTRVAE  223 (473)
T ss_dssp             CTTBSTTTCB--SCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHH-HS------CTTSBGGG
T ss_pred             CCCCHHHhCC--CCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHh-cC------CCCCcHHH
Confidence            4567899999  5899999999999999999986     478999999 89999999999997 31      12678999


Q ss_pred             ccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHH
Q 017536          214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (369)
Q Consensus       214 ~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~  268 (369)
                      +|+++++++++++++.++++.|.+++.+.+||||++|+++|+||..|+++.+..+
T Consensus       224 im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i~~e  278 (473)
T 2zy9_A          224 IMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAE  278 (473)
T ss_dssp             TSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHHH
T ss_pred             HhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999987553

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.64  E-value=9.8e-16  Score=128.39  Aligned_cols=119  Identities=20%  Similarity=0.199  Sum_probs=103.4

Q ss_pred             ccccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHH
Q 017536           40 ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE  118 (369)
Q Consensus        40 ~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~  118 (369)
                      ..+++++|.++++++.+++++.+|+++|.+++++++||+| +|+++|+++..|++......                   
T Consensus         8 ~~~v~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~~~-------------------   68 (184)
T 1pvm_A            8 FMRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPR-------------------   68 (184)
T ss_dssp             CCBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGG-------------------
T ss_pred             ccCHHHhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhc-------------------
Confidence            4799999999999999999999999999999999999998 79999999999987642100                   


Q ss_pred             HhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       119 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                                       .......+++++|.  ++++++++++++.++++.|.+++.+++||++ +|+++|+||..|++
T Consensus        69 -----------------~~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll  128 (184)
T 1pvm_A           69 -----------------NKKPDEVPIRLVMR--KPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLS  128 (184)
T ss_dssp             -----------------CCCGGGSBGGGTSB--SSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHT
T ss_pred             -----------------ccCcccCCHHHHhC--CCCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHH
Confidence                             00012346889998  5789999999999999999999999999999 69999999999997

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.63  E-value=9.7e-17  Score=158.94  Aligned_cols=123  Identities=11%  Similarity=0.003  Sum_probs=104.6

Q ss_pred             CCCCccccccCCCceeEeCCCCcHHHHHHHHH-HcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCC------------
Q 017536          140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKML-ELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLP------------  205 (369)
Q Consensus       140 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~-~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~------------  205 (369)
                      ...+++++|+|++++.++++++++.++.+.|. +++++++||+| +++++|++|.+|++ +.+.....            
T Consensus       451 ~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~-~~l~~~~~~~~~~~~~~~~~  529 (632)
T 3org_A          451 PEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKEIV-DRLQHVLEDVPEPIAGHRTL  529 (632)
T ss_dssp             TTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEESHHHHT-TTTTTC--------------
T ss_pred             ccCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEEEHHHHH-HHHHHHhhhcccccccccce
Confidence            34678999998889999999999999999999 79999999999 79999999999997 43322100            


Q ss_pred             -----------------------------------ccccccccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCC
Q 017536          206 -----------------------------------ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDG  250 (369)
Q Consensus       206 -----------------------------------~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g  250 (369)
                                                         ....+++++|+++++++++++++.++++.|.+++.+++||+ ++|
T Consensus       530 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e~G  608 (632)
T 3org_A          530 VLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVT-ERG  608 (632)
T ss_dssp             -----------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEE-ETT
T ss_pred             eccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEE-ECC
Confidence                                               00113788999999999999999999999999999999999 789


Q ss_pred             cEEEEEeHHHHHHH
Q 017536          251 DVVDVVDVIHITHA  264 (369)
Q Consensus       251 ~~~Givt~~di~~~  264 (369)
                      +++|+||++|++++
T Consensus       609 ~lvGIVT~~Dll~~  622 (632)
T 3org_A          609 KLVGIVEREDVAYG  622 (632)
T ss_dssp             EEEEEEEGGGTEEC
T ss_pred             EEEEEEehhhHHHH
Confidence            99999999999874

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.63  E-value=7.6e-16  Score=149.72  Aligned_cols=124  Identities=11%  Similarity=0.099  Sum_probs=108.8

Q ss_pred             CCCccccccCCCceeEeCCC-CcHHHHHHHHHHcCCceEEEEe--CCEEEEEeehHHHHHHHHhcCCCcccccccccccc
Q 017536          141 RPSLSTIIPEKSKVVTISPT-DTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP  217 (369)
Q Consensus       141 ~~~v~~im~~~~~~~~v~~~-~~l~~~~~~m~~~~~~~~~V~d--~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~  217 (369)
                      ..+++++|+  ++++++.++ +++.++++.|.+++++++||++  +++++|+||.+|+++.+.... .....++.++|++
T Consensus       383 ~~~V~diM~--~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~-~~~~~~V~~im~~  459 (527)
T 3pc3_A          383 SLAIAELEL--PAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMN-RQQSDPAIKALNK  459 (527)
T ss_dssp             TSBGGGGCC--CCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHC-CCTTSBGGGGEET
T ss_pred             CCcHHHhCc--CCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhcc-CcCCCcHHHHhcC
Confidence            567999998  679999999 9999999999999999999998  789999999999985555432 2336799999999


Q ss_pred             CCceecCCCCHHHHHHHHHhCCCceeeEEcCC----CcEEEEEeHHHHHHHHHHHh
Q 017536          218 NPECATIDTPIVDALHIMHDGKFLHLPVVDRD----GDVVDVVDVIHITHAAVATV  269 (369)
Q Consensus       218 ~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~----g~~~Givt~~di~~~~~~~~  269 (369)
                      +++++++++++.+++++|.++++  +||||++    |+++||||..||++++....
T Consensus       460 ~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~~  513 (527)
T 3pc3_A          460 RVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAAGK  513 (527)
T ss_dssp             TCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHTCC
T ss_pred             CCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHhcc
Confidence            99999999999999999977765  7999984    99999999999999887544

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.63  E-value=1.2e-15  Score=124.65  Aligned_cols=128  Identities=15%  Similarity=0.215  Sum_probs=104.2

Q ss_pred             CCccccccccccc--CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHH
Q 017536           37 NLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAA  113 (369)
Q Consensus        37 ~~~~~~v~dim~~--~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~  113 (369)
                      .+...+++++|.+  +++++.+++++.+|++.|.+++++++||+| +|+++|+++..|++......              
T Consensus        10 ~l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~--------------   75 (159)
T 1yav_A           10 QLLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGL--------------   75 (159)
T ss_dssp             -CTTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCS--------------
T ss_pred             HHhHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhhh--------------
Confidence            4567899999998  899999999999999999999999999998 68999999999987652100              


Q ss_pred             HHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeeh
Q 017536          114 VEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTS  192 (369)
Q Consensus       114 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~  192 (369)
                               ... .        .......+++++|.  ++++++++++++.++++.|.++++  +||++ +|+++|+||.
T Consensus        76 ---------~~~-~--------~~~~~~~~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~  133 (159)
T 1yav_A           76 ---------ERI-E--------FEKLDQITVEEVML--TDIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTR  133 (159)
T ss_dssp             ---------SSB-C--------GGGTTTSBHHHHSB--CSCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEH
T ss_pred             ---------ccc-c--------hhhhccCCHHHhcC--CCCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEH
Confidence                     000 0        00123456888998  578999999999999999998876  99999 8999999999


Q ss_pred             HHHHHHHH
Q 017536          193 KDILMRVI  200 (369)
Q Consensus       193 ~dll~~~~  200 (369)
                      +|+++.+.
T Consensus       134 ~dil~~~~  141 (159)
T 1yav_A          134 RVVLKELN  141 (159)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99984433

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.61  E-value=2e-15  Score=135.34  Aligned_cols=121  Identities=14%  Similarity=0.234  Sum_probs=106.3

Q ss_pred             ccCCCcccccccccccCCeEEeCCCcHHHHHHHHHhC-----CCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhh
Q 017536           34 RELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQG-----KFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKG  107 (369)
Q Consensus        34 ~~~~~~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~-----~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~  107 (369)
                      ........+++++|+++++++++++++.+|++.|.++     +++++||+| +|+++|+++..|++..            
T Consensus       130 ~ll~~~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~~------------  197 (286)
T 2oux_A          130 ELLHYEDETAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVN------------  197 (286)
T ss_dssp             HHTTSCTTBHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTS------------
T ss_pred             HHhcCChHHHHHhCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHcC------------
Confidence            3346678899999999999999999999999999987     788999999 7999999999998642            


Q ss_pred             hHHHHHHHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEE
Q 017536          108 KAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKP  186 (369)
Q Consensus       108 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~  186 (369)
                                                     ....+++++|.  ++++++++++++.++++.|.+++.+++||++ +|++
T Consensus       198 -------------------------------~~~~~v~~im~--~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~l  244 (286)
T 2oux_A          198 -------------------------------DDDTLIADILN--ERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHL  244 (286)
T ss_dssp             -------------------------------CTTSBHHHHSB--SCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBE
T ss_pred             -------------------------------CCCCcHHHHcC--CCCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeE
Confidence                                           12346888897  5789999999999999999999999999999 8999


Q ss_pred             EEEeehHHHHHHH
Q 017536          187 RGILTSKDILMRV  199 (369)
Q Consensus       187 ~Giit~~dll~~~  199 (369)
                      +|+||..|++..+
T Consensus       245 vGiIT~~Dil~~i  257 (286)
T 2oux_A          245 LGIVTVDDIIDVI  257 (286)
T ss_dssp             EEEEEHHHHHHHH
T ss_pred             EEEEEHHHHHHHH
Confidence            9999999998433

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.60  E-value=2.9e-15  Score=144.06  Aligned_cols=116  Identities=25%  Similarity=0.300  Sum_probs=104.3

Q ss_pred             ccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe---CCEEEEEeehHHHHHHHHhcCCCcccccccccccc-CC
Q 017536          144 LSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP-NP  219 (369)
Q Consensus       144 v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d---~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~-~~  219 (369)
                      .++.|.  .+++++++++++.+++++|.+++++++||++   +++++|+||.+|+. .     ......++.++|++ ++
T Consensus       115 ~~~~m~--~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~-~-----~~~~~~~V~~vM~~~~~  186 (511)
T 3usb_A          115 SESGVI--SDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMR-F-----IQDYSIKISDVMTKEQL  186 (511)
T ss_dssp             SSSCSS--SSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHT-T-----CCCSSSBHHHHCCCCCC
T ss_pred             cccccc--cCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhh-h-----hccCCCcHHHhcccCCC
Confidence            456676  5789999999999999999999999999998   57999999999995 2     12236789999997 99


Q ss_pred             ceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHH
Q 017536          220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (369)
Q Consensus       220 ~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~  267 (369)
                      +++++++++.+++++|.+++.+.+||||++|+++|+||.+|+++++..
T Consensus       187 vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~  234 (511)
T 3usb_A          187 ITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEF  234 (511)
T ss_dssp             CCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             EEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhc
Confidence            999999999999999999999999999999999999999999998753

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.60  E-value=5.3e-15  Score=132.19  Aligned_cols=116  Identities=21%  Similarity=0.240  Sum_probs=103.9

Q ss_pred             CCcccccccccccCCeEEeCCCcHHHHHHHHHhC-----CCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHH
Q 017536           37 NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQG-----KFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAI  110 (369)
Q Consensus        37 ~~~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~-----~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~  110 (369)
                      .....+++++|+++++++.+++++.+|++.|.++     ++.++||+| +|+++|+++.+|++..               
T Consensus       131 ~~~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~---------------  195 (278)
T 2yvy_A          131 RYEEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA---------------  195 (278)
T ss_dssp             HSCTTBGGGTCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHHS---------------
T ss_pred             CCCcchHHhhcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhcC---------------
Confidence            4556799999999999999999999999999986     789999998 7999999999998742               


Q ss_pred             HHHHHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEE
Q 017536          111 AAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGI  189 (369)
Q Consensus       111 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Gi  189 (369)
                                                  ....+++++|.  ++++++++++++.++++.|.+++.+.+||++ +|+++|+
T Consensus       196 ----------------------------~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGi  245 (278)
T 2yvy_A          196 ----------------------------DPRTRVAEIMN--PKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGI  245 (278)
T ss_dssp             ----------------------------CTTCBSTTTSB--SSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEE
T ss_pred             ----------------------------CCCCcHHHHhC--CCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEE
Confidence                                        12356899997  5789999999999999999999999999999 8999999


Q ss_pred             eehHHHHH
Q 017536          190 LTSKDILM  197 (369)
Q Consensus       190 it~~dll~  197 (369)
                      ||..|++.
T Consensus       246 vT~~Dil~  253 (278)
T 2yvy_A          246 VTVDDVLD  253 (278)
T ss_dssp             EEHHHHHH
T ss_pred             EEHHHHHH
Confidence            99999983

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.58  E-value=6e-17  Score=151.52  Aligned_cols=135  Identities=19%  Similarity=0.214  Sum_probs=10.2

Q ss_pred             CCCCCChh-hHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe----CCEEEEEeehHHHH
Q 017536          122 GTSISGPN-TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV----ENKPRGILTSKDIL  196 (369)
Q Consensus       122 g~~~~~~~-~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d----~~~~~Giit~~dll  196 (369)
                      |.++++.+ ...++..+...-++....|.  .+++++.|+.++.+++++|.+++++.+||++    +++++||+|.+|+ 
T Consensus       117 GiGvIH~n~sie~Qa~~V~~VKr~e~g~i--~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~-  193 (556)
T 4af0_A          117 GLGIIHHNCSAEEQAAMVRRVKKYENGFI--TDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDV-  193 (556)
T ss_dssp             CEEEECCSSCHHHHHHHHHHHHHCCC------------------------------------------------------
T ss_pred             CeEEEcCCCCHHHHHHHHHHHHhcccCcc--CCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEecccc-
Confidence            67777665 23333332211112234444  5799999999999999999999999999998    4689999999998 


Q ss_pred             HHHHhcCCCccccccccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHH
Q 017536          197 MRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (369)
Q Consensus       197 ~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~  265 (369)
                       ++.    + ...+++++|++++++++++.++.+|.++|.++++..+||||++|+++|+||++|+++..
T Consensus       194 -rf~----d-~~~~V~evMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~  256 (556)
T 4af0_A          194 -QFQ----D-AETPIKSVMTTEVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQ  256 (556)
T ss_dssp             ---------------------------------------------------------------------
T ss_pred             -ccc----c-cceEhhhhcccceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhh
Confidence             332    1 26799999999999999999999999999999999999999999999999999999844

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.56  E-value=7.7e-16  Score=147.56  Aligned_cols=115  Identities=17%  Similarity=0.176  Sum_probs=90.7

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccc-c-CC
Q 017536          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT-P-NP  219 (369)
Q Consensus       143 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~-~-~~  219 (369)
                      +++++|.  .+++++++++++.+++++|.+++++++||++ +++++|+||.+|+. .     ......++.++|+ + ++
T Consensus        90 ~~~~~m~--~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~-~-----~~~~~~~v~diM~p~~~~  161 (496)
T 4fxs_A           90 IFEAGVV--THPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVR-F-----VTDLTKSVAAVMTPKERL  161 (496)
T ss_dssp             HCCC--C--BCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHT-T-----CCCTTSBGGGTSEEGGGC
T ss_pred             ccccccc--cCceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHh-h-----cccCCCcHHHHhcCCCCC
Confidence            4577888  6899999999999999999999999999999 89999999999994 1     1223678999998 4 68


Q ss_pred             ceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHH
Q 017536          220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (369)
Q Consensus       220 ~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~  265 (369)
                      +++++++++.+++++|.+++++.+||||++|+++|+||++||+++.
T Consensus       162 vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~  207 (496)
T 4fxs_A          162 ATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAE  207 (496)
T ss_dssp             CEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC-----C
T ss_pred             EEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhh
Confidence            9999999999999999999999999999999999999999999853

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.52  E-value=6.7e-14  Score=133.85  Aligned_cols=119  Identities=20%  Similarity=0.231  Sum_probs=105.5

Q ss_pred             CCCcccccccccccCCeEEeCCCcHHHHHHHHHhC-----CCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhH
Q 017536           36 LNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQG-----KFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKA  109 (369)
Q Consensus        36 ~~~~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~-----~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~  109 (369)
                      ....+.+++++|+++++++++++++.+|++.|.++     ++.++||+| +++++|+++.+|++..              
T Consensus       150 l~~~~~~v~~iM~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~~--------------  215 (473)
T 2zy9_A          150 ARYEEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA--------------  215 (473)
T ss_dssp             HTSCTTBSTTTCBSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHHS--------------
T ss_pred             hcCCCCCHHHhCCCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhcC--------------
Confidence            35667899999999999999999999999999986     589999999 6999999999998742              


Q ss_pred             HHHHHHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEE
Q 017536          110 IAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRG  188 (369)
Q Consensus       110 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~G  188 (369)
                                                   ....+++++|.  ++++++++++++.++++.|.+++...+||+| +|+++|
T Consensus       216 -----------------------------~~~~~v~dim~--~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvG  264 (473)
T 2zy9_A          216 -----------------------------DPRTRVAEIMN--PKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVG  264 (473)
T ss_dssp             -----------------------------CTTSBGGGTSB--SSCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEE
T ss_pred             -----------------------------CCCCcHHHHhC--CCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEE
Confidence                                         12356899997  5799999999999999999999999999999 899999


Q ss_pred             EeehHHHHHHH
Q 017536          189 ILTSKDILMRV  199 (369)
Q Consensus       189 iit~~dll~~~  199 (369)
                      +||.+|++..+
T Consensus       265 iIT~~Dil~~i  275 (473)
T 2zy9_A          265 IVTVDDVLDVL  275 (473)
T ss_dssp             EEEHHHHHHHH
T ss_pred             EEehHhhHHHH
Confidence            99999998433

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.51  E-value=4.6e-14  Score=137.18  Aligned_cols=123  Identities=13%  Similarity=0.219  Sum_probs=104.0

Q ss_pred             CcccccccccccCCeEEeCC-CcHHHHHHHHHhCCCeEeeEee--CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHH
Q 017536           38 LEETPVSKVMTRNPTFVLSD-TLAVEALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV  114 (369)
Q Consensus        38 ~~~~~v~dim~~~~i~v~~~-~~l~~a~~~m~~~~~~~lpVvd--~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~  114 (369)
                      +...+|+++|+++++++.++ +++.+|+++|.+++++++||+|  +++++|+|+.+|+++.....               
T Consensus       381 l~~~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~---------------  445 (527)
T 3pc3_A          381 WWSLAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSM---------------  445 (527)
T ss_dssp             TTTSBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHH---------------
T ss_pred             ccCCcHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhc---------------
Confidence            34578999999999999999 9999999999999999999999  68999999999998763321               


Q ss_pred             HhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeC-----CEEEEE
Q 017536          115 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVE-----NKPRGI  189 (369)
Q Consensus       115 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~-----~~~~Gi  189 (369)
                                            ......+++++|.  ++++++++++++.+++++|.++++  +||+++     |+++|+
T Consensus       446 ----------------------~~~~~~~V~~im~--~~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGI  499 (527)
T 3pc3_A          446 ----------------------NRQQSDPAIKALN--KRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKAL  499 (527)
T ss_dssp             ----------------------CCCTTSBGGGGEE--TTCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEE
T ss_pred             ----------------------cCcCCCcHHHHhc--CCCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEE
Confidence                                  0122457899998  679999999999999999976654  799984     899999


Q ss_pred             eehHHHHHHHHhc
Q 017536          190 LTSKDILMRVISQ  202 (369)
Q Consensus       190 it~~dll~~~~~~  202 (369)
                      ||..|++ +.+..
T Consensus       500 VT~~Dll-~~l~~  511 (527)
T 3pc3_A          500 ATKLDVT-TFIAA  511 (527)
T ss_dssp             EEHHHHH-HHHHT
T ss_pred             EEHHHHH-HHHHh
Confidence            9999998 54443

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.51  E-value=8.8e-16  Score=147.05  Aligned_cols=115  Identities=21%  Similarity=0.221  Sum_probs=2.7

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccc-c-CCc
Q 017536          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMT-P-NPE  220 (369)
Q Consensus       143 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~-~-~~~  220 (369)
                      +++++|.  .+++++++++++.+++++|.+++++++||+++++++|+||.+|+. ...     ....++.++|+ + +++
T Consensus        89 ~~~~~m~--~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd~g~lvGIVt~rDl~-~~~-----~~~~~V~~vMtp~~~~v  160 (490)
T 4avf_A           89 KHETAIV--RDPVTVTPSTKIIELLQMAREYGFSGFPVVEQGELVGIVTGRDLR-VKP-----NAGDTVAAIMTPKDKLV  160 (490)
T ss_dssp             HCCC----------------------------------------------------------------------------
T ss_pred             ccccCcc--cCceEeCCCCcHHHHHHHHHHhCCCEEEEEECCEEEEEEEhHHhh-hcc-----ccCCcHHHHhccCCCCE
Confidence            4678888  678999999999999999999999999999989999999999994 221     12678999998 4 699


Q ss_pred             eecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHH
Q 017536          221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (369)
Q Consensus       221 ~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~  265 (369)
                      ++++++++.+++++|.+++++.+||||++|+++|+||+.|++++.
T Consensus       161 tv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~  205 (490)
T 4avf_A          161 TAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAK  205 (490)
T ss_dssp             ---------------------------------------------
T ss_pred             EECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhc
Confidence            999999999999999999999999999999999999999999864

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.50  E-value=1.4e-13  Score=132.87  Aligned_cols=115  Identities=21%  Similarity=0.304  Sum_probs=104.4

Q ss_pred             ccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe---CCEEEEEeehHHHHHHHHhcCCCcccccccccccc-CC
Q 017536          144 LSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP-NP  219 (369)
Q Consensus       144 v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d---~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~-~~  219 (369)
                      ++++|.  .+++++++++++.++++.|.+++++++||++   +++++|+||.+|++ ..  .   ....++.++|++ ++
T Consensus        92 ~~~im~--~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~-~~--~---~~~~~v~~im~~~~~  163 (491)
T 1zfj_A           92 SENGVI--IDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMR-FI--S---DYNAPISEHMTSEHL  163 (491)
T ss_dssp             HTTTTS--SSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHH-HC--S---CSSSBTTTSCCCSCC
T ss_pred             HHhcCc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHh-hh--c---cCCCcHHHHcCCCCC
Confidence            467888  5789999999999999999999999999997   68999999999996 32  1   136789999988 89


Q ss_pred             ceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHH
Q 017536          220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (369)
Q Consensus       220 ~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~  266 (369)
                      +++++++++.++++.|.+++.+.+||||++|+++|+||..||++.+.
T Consensus       164 ~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~  210 (491)
T 1zfj_A          164 VTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIE  210 (491)
T ss_dssp             CCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             EEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999876

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.50  E-value=9.3e-16  Score=147.70  Aligned_cols=116  Identities=22%  Similarity=0.201  Sum_probs=1.3

Q ss_pred             cc-ccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-C---CEEEEEeehHHHHHHHHhcCCCccccccccccccC--
Q 017536          146 TI-IPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E---NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN--  218 (369)
Q Consensus       146 ~i-m~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~---~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~--  218 (369)
                      ++ |.  ++++++++++++.++++.|.+++++++||++ +   ++++|+||.+|++ ..    ......++.++|+++  
T Consensus       100 e~gM~--~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~-~~----~~~~~~~V~diM~~~~~  172 (503)
T 1me8_A          100 KAGFV--VSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYP-ID----LTQTETKVSDMMTPFSK  172 (503)
T ss_dssp             TC------------------------------------------------------------------------------
T ss_pred             ccCcc--cCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHH-hh----hccccCcHHHHhCCCCC
Confidence            44 87  5799999999999999999999999999999 5   8999999999996 32    112367899999887  


Q ss_pred             CceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHH
Q 017536          219 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (369)
Q Consensus       219 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~  268 (369)
                      ++++++++++.+|+++|.+++++.+||||++|+++|+||.+||++++...
T Consensus       173 ~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~~  222 (503)
T 1me8_A          173 LVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVCH  222 (503)
T ss_dssp             -------------------------------------------------C
T ss_pred             CEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhhhcc
Confidence            99999999999999999999999999999999999999999999987654

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.49  E-value=1.6e-13  Score=120.28  Aligned_cols=167  Identities=17%  Similarity=0.197  Sum_probs=108.1

Q ss_pred             CccCCcCEEEEEcCCCcEEEEEeHHHHHHHHHhccCC---------------------------------------Cccc
Q 017536            1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELN---------------------------------------LEET   41 (369)
Q Consensus         1 M~~~~~~~~~V~d~~~~~~Givt~~Di~~~~~~~~~~---------------------------------------~~~~   41 (369)
                      |.+++++++||+|++|+++|++|..|+++.+......                                       ....
T Consensus        33 m~~~~~~~lpVvd~~~~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~  112 (245)
T 3l2b_A           33 MRDKNLKSIPVADGNNHLLGMLSTSNITATYMDIWDSNILAKSATSLDNILDTLSAEAQNINEERKVFPGKVVVAAMQAE  112 (245)
T ss_dssp             HHHTTCSEEEEECTTCBEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHHHHHHHTTCEEEECCTTCCCCCSCEEECCSCGG
T ss_pred             HHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHhhhhhhhhhccCCHHHHHHHhCCEEEeccCCcceeeeeEEEEeCChH
Confidence            5689999999999889999999999998665432100                                       0001


Q ss_pred             ccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhc
Q 017536           42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHW  121 (369)
Q Consensus        42 ~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (369)
                      .+.+.+.++.+.+-.+  -.++...+.+++...+++..+..+     ..++... ..                    ...
T Consensus       113 ~~~~~~~~~~ivIvgd--r~~~~~~~i~~~~~~liit~~~~~-----~~~v~~~-a~--------------------~~~  164 (245)
T 3l2b_A          113 SLKEFISEGDIAIAGD--RAEIQAELIELKVSLLIVTGGHTP-----SKEIIEL-AK--------------------KNN  164 (245)
T ss_dssp             GGGGTCCTTCEEEECS--CHHHHHHHHHTTCSEEEECTTCCC-----CHHHHHH-HH--------------------HHT
T ss_pred             HHHhcCCCCCEEEECC--CHHHHHHHHHcCCCEEEECCCCCC-----CHHHHHH-HH--------------------HcC
Confidence            1222233333334333  367777888888888877753221     1111111 00                    000


Q ss_pred             CCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          122 GTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       122 g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                      ......+.+............+++++|+| +++.++++++++.++++.|.+++++++||+| +|+++|++|.+|++
T Consensus       165 ~~~i~t~~d~~~~~~~~~~~~~v~~im~~-~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dll  239 (245)
T 3l2b_A          165 ITVITTPHDSFTASRLIVQSLPVDYVMTK-DNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLI  239 (245)
T ss_dssp             CEEEECSSCHHHHHHHGGGGSBHHHHSBC-TTCCCEETTSBHHHHHHHHHHHCCSEEEEECTTCBEEEEEECC---
T ss_pred             CeEEEeCCChHHHHHHHhcCCceeeEecC-CccEEECCCCcHHHHHHHHHhcCCceEEEEcCCCeEEEEEEHHHhh
Confidence            01111222333334444556779999986 6899999999999999999999999999999 89999999999997

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.49  E-value=1e-13  Score=133.27  Aligned_cols=160  Identities=13%  Similarity=0.186  Sum_probs=124.6

Q ss_pred             ccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee---CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHH
Q 017536           42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE---NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE  118 (369)
Q Consensus        42 ~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd---~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~  118 (369)
                      +..+.|..+++++++++++.+++++|.+++++++||+|   +++++|+|+.+|+...                       
T Consensus       114 ~~~~~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~~-----------------------  170 (511)
T 3usb_A          114 RSESGVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRFI-----------------------  170 (511)
T ss_dssp             TSSSCSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTTC-----------------------
T ss_pred             ccccccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhhh-----------------------
Confidence            34567888999999999999999999999999999998   5799999999998521                       


Q ss_pred             HhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHH
Q 017536          119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM  197 (369)
Q Consensus       119 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~  197 (369)
                                         .....+++++|++ .+++++++++++.++++.|.+++.+.+||+| +|+++|++|.+|++ 
T Consensus       171 -------------------~~~~~~V~~vM~~-~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil-  229 (511)
T 3usb_A          171 -------------------QDYSIKISDVMTK-EQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIE-  229 (511)
T ss_dssp             -------------------CCSSSBHHHHCCC-CCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHH-
T ss_pred             -------------------ccCCCcHHHhccc-CCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHH-
Confidence                               0124568899984 4899999999999999999999999999999 89999999999998 


Q ss_pred             HHHhcCCCccccccccccccCCc--eecCCCCHHHHHHHHHhCCCceeeEEcCCC
Q 017536          198 RVISQNLPADSTLVEKVMTPNPE--CATIDTPIVDALHIMHDGKFLHLPVVDRDG  250 (369)
Q Consensus       198 ~~~~~~~~~~~~~v~~~m~~~~~--~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g  250 (369)
                      +.+...     ....+.+.+..+  .+.......+.++.+.+.+...+.|-..++
T Consensus       230 ~~~~~p-----~a~~D~~~rl~V~aavg~~~d~~era~aLveaGvd~I~Id~a~g  279 (511)
T 3usb_A          230 KVIEFP-----NSAKDKQGRLLVGAAVGVTADAMTRIDALVKASVDAIVLDTAHG  279 (511)
T ss_dssp             HHHHCT-----TCCBCTTSCBCCEEEECSSTTHHHHHHHHHHTTCSEEEEECSCT
T ss_pred             Hhhhcc-----cchhhhccceeeeeeeeeccchHHHHHHHHhhccceEEeccccc
Confidence            444331     123344433333  333344456667778888998877765554

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.48  E-value=4.1e-15  Score=143.24  Aligned_cols=165  Identities=15%  Similarity=0.101  Sum_probs=24.9

Q ss_pred             ccccc-cccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-C---CeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 017536           42 PVSKV-MTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N---GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG  116 (369)
Q Consensus        42 ~v~di-m~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~---~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~  116 (369)
                      +..++ |+++++++++++++.+|+++|.+++++++||+| +   ++++|+|+.+|++..  .                  
T Consensus        97 ~~~e~gM~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~--~------------------  156 (503)
T 1me8_A           97 KNFKAGFVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPID--L------------------  156 (503)
T ss_dssp             HTTTC---------------------------------------------------------------------------
T ss_pred             hhcccCcccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhh--h------------------
Confidence            34455 999999999999999999999999999999998 4   799999999998642  0                  


Q ss_pred             HHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHH
Q 017536          117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI  195 (369)
Q Consensus       117 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dl  195 (369)
                                           .....+++++|++..+++++++++++.++++.|.+++.+.+||+| +|+++|+||.+|+
T Consensus       157 ---------------------~~~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Di  215 (503)
T 1me8_A          157 ---------------------TQTETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDY  215 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ---------------------ccccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHH
Confidence                                 012345889998544599999999999999999999999999999 8999999999999


Q ss_pred             HHHHHhcCCCccccccccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcE
Q 017536          196 LMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDV  252 (369)
Q Consensus       196 l~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~  252 (369)
                      ++.+. ..... ..+...++.  ...++. ....+.++.|.+.+.+.++|-..+|..
T Consensus       216 l~~~~-~~~~~-~d~~~~l~v--~a~v~~-~~~~e~~~~l~e~gv~~l~Vd~~~g~~  267 (503)
T 1me8_A          216 DRSQV-CHNEL-VDSQKRYLV--GAGINT-RDFRERVPALVEAGADVLCIDSSDGFS  267 (503)
T ss_dssp             -------CCCC-BCTTSCBCC--EEEECS-SSHHHHHHHHHHHTCSEEEECCSCCCS
T ss_pred             HHhhh-cccch-hcccccccc--ccccCc-hhHHHHHHHHHhhhccceEEecccCcc
Confidence            84443 22211 112222221  123344 566677888888888876552333433

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.47  E-value=6.5e-14  Score=138.70  Aligned_cols=156  Identities=13%  Similarity=0.102  Sum_probs=102.5

Q ss_pred             cccccccccc--cCCeEEeCCCcHHHHHHHHH-hCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhh--HHHH
Q 017536           39 EETPVSKVMT--RNPTFVLSDTLAVEALQKMV-QGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGK--AIAA  112 (369)
Q Consensus        39 ~~~~v~dim~--~~~i~v~~~~~l~~a~~~m~-~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~--~~~~  112 (369)
                      .+.+|+|+|+  ++++++++++++.++.+.|. +++++++||+| +++++|+++.+|+++..............  ....
T Consensus       451 ~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~  530 (632)
T 3org_A          451 PEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTLV  530 (632)
T ss_dssp             TTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEESHHHHTTTTTTC---------------
T ss_pred             ccCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEEEHHHHHHHHHHHhhhccccccccccee
Confidence            5689999999  89999999999999999999 89999999999 69999999999998653321110000000  0000


Q ss_pred             HHH--hHHHhcCCCCC-Ch----hhHHHHHHHH-hCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCC
Q 017536          113 AVE--GVEKHWGTSIS-GP----NTFIETLRER-MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVEN  184 (369)
Q Consensus       113 ~~~--~~~~~~g~~~~-~~----~~~~~~~~~~-~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~  184 (369)
                      ...  ...+....... .+    ....+..... ....+++++|+  ++++++++++++.++++.|.+++.+++||+++|
T Consensus       531 ~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt--~~pitV~~~~~l~ea~~~M~~~~i~~lpVve~G  608 (632)
T 3org_A          531 LLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCD--VSPIVVTSYSLVRQLHFLFVMLMPSMIYVTERG  608 (632)
T ss_dssp             ----------------------------------------CCSCC--CCCCEEETTCBHHHHHHHHHHTCCSEEEEEETT
T ss_pred             ccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhc--CCCceecCCCcHHHHHHHHHhcCCCEEEEEECC
Confidence            000  00000000000 00    0000000000 11124889999  678999999999999999999999999999999


Q ss_pred             EEEEEeehHHHH
Q 017536          185 KPRGILTSKDIL  196 (369)
Q Consensus       185 ~~~Giit~~dll  196 (369)
                      +++|+||.+|++
T Consensus       609 ~lvGIVT~~Dll  620 (632)
T 3org_A          609 KLVGIVEREDVA  620 (632)
T ss_dssp             EEEEEEEGGGTE
T ss_pred             EEEEEEehhhHH
Confidence            999999999997

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=99.47  E-value=2e-13  Score=94.55  Aligned_cols=69  Identities=30%  Similarity=0.415  Sum_probs=63.1

Q ss_pred             eeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCCcee
Q 017536          154 VVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECA  222 (369)
Q Consensus       154 ~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v  222 (369)
                      +++++|++++.+|+++|.+++++++||+++|+++|++|.+|+++++...+.+..+.+++++|+++++++
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~~~lvGIvT~~Di~~~~~~~~~~~~~~~V~~iMt~~~iTV   70 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEGDEILGVVTERDILDKVVAKGKNPKEVKVEEIMTKNPVKI   70 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEETTEEEEEEEHHHHHHHTTTTTCCGGGCBGGGTCEECTTCC
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHHhcCCCcccCCHHHhcCCCCeEC
Confidence            789999999999999999999999999999999999999999877777777666789999999998875

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.43  E-value=1.3e-14  Score=140.11  Aligned_cols=117  Identities=25%  Similarity=0.327  Sum_probs=6.4

Q ss_pred             ccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCcccccccccccc--CCc
Q 017536          144 LSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPE  220 (369)
Q Consensus       144 v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~--~~~  220 (369)
                      +.++|.  ++++++++++++.++++.|.+++++.+||+| +++++|+||.+|+. +.  .   ....++.++|++  +++
T Consensus        97 ~~~iM~--~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~-~~--~---~~~~~v~~im~~~~~~~  168 (494)
T 1vrd_A           97 TENGII--YDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVR-FE--K---NLSKKIKDLMTPREKLI  168 (494)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             HhhcCc--cCCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHH-hh--c---CCCCcHHHHhCCCCCCe
Confidence            577888  5799999999999999999999999999999 78999999999996 32  1   125789999998  999


Q ss_pred             eecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHH
Q 017536          221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (369)
Q Consensus       221 ~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~  268 (369)
                      ++++++++.+++++|.+++++.+||||++|+++|+||..|+++++...
T Consensus       169 ~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~~~  216 (494)
T 1vrd_A          169 VAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIEHP  216 (494)
T ss_dssp             ----------------------------------------CHHHHTCT
T ss_pred             EECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhccc
Confidence            999999999999999999999999999999999999999999986543

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.38  E-value=1.5e-13  Score=131.69  Aligned_cols=113  Identities=19%  Similarity=0.284  Sum_probs=89.5

Q ss_pred             ccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHh
Q 017536           42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH  120 (369)
Q Consensus        42 ~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (369)
                      ++.++|..+++++++++++.+++++|.+++++++||+| +++++|+|+.+|+...                         
T Consensus        90 ~~~~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~~-------------------------  144 (496)
T 4fxs_A           90 IFEAGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVRFV-------------------------  144 (496)
T ss_dssp             HCCC--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHTTC-------------------------
T ss_pred             ccccccccCceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHhhc-------------------------
Confidence            56788999999999999999999999999999999999 7999999999998521                         


Q ss_pred             cCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       121 ~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                                       .....+++++|+|+.++++++++.++.+++++|.+++...+||+| +|+++|+||.+|++
T Consensus       145 -----------------~~~~~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl  204 (496)
T 4fxs_A          145 -----------------TDLTKSVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFH  204 (496)
T ss_dssp             -----------------CCTTSBGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC---
T ss_pred             -----------------ccCCCcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHH
Confidence                             012456899998534699999999999999999999999999999 89999999999998

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.36  E-value=2.6e-13  Score=129.95  Aligned_cols=115  Identities=24%  Similarity=0.296  Sum_probs=3.3

Q ss_pred             cccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHh
Q 017536           41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH  120 (369)
Q Consensus        41 ~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (369)
                      .++.++|..+++++++++++.+|+++|.+++++++||+|+++++|+|+.+|+...                         
T Consensus        88 k~~~~~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd~g~lvGIVt~rDl~~~-------------------------  142 (490)
T 4avf_A           88 KKHETAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVEQGELVGIVTGRDLRVK-------------------------  142 (490)
T ss_dssp             HHCCC---------------------------------------------------------------------------
T ss_pred             cccccCcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEECCEEEEEEEhHHhhhc-------------------------
Confidence            3578899999999999999999999999999999999999999999999998521                         


Q ss_pred             cCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHH
Q 017536          121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM  197 (369)
Q Consensus       121 ~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~  197 (369)
                                       .....+++++|+|+.+++++++++++.+++++|.+++.+.+||+| +|+++|+||.+|+++
T Consensus       143 -----------------~~~~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~  203 (490)
T 4avf_A          143 -----------------PNAGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEK  203 (490)
T ss_dssp             ------------------------------------------------------------------------------
T ss_pred             -----------------cccCCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhh
Confidence                             012345889998534699999999999999999999999999999 899999999999983

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.36  E-value=6.1e-14  Score=134.73  Aligned_cols=112  Identities=29%  Similarity=0.408  Sum_probs=0.9

Q ss_pred             ccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceec
Q 017536          144 LSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECAT  223 (369)
Q Consensus       144 v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~  223 (369)
                      ..+.|.  .+++++++++++.++++.|.+++++++||+++++++|++|.+|++ .   .    ...++.++|.+++++++
T Consensus        95 ~~~~m~--~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~~~lvGivt~~Dl~-~---~----~~~~v~~im~~~~~~v~  164 (486)
T 2cu0_A           95 AERLIV--EDVITIAPDETVDFALFLMEKHGIDGLPVVEDEKVVGIITKKDIA-A---R----EGKLVKELMTKEVITVP  164 (486)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             hhhccc--cCceEECCCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHhc-c---C----CCCCHHHHccCCCeEEC
Confidence            355676  679999999999999999999999999999889999999999996 3   1    25689999998999999


Q ss_pred             CCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHH
Q 017536          224 IDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (369)
Q Consensus       224 ~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~  265 (369)
                      +++++.++++.|.+++.+.+||||++|+++|+||.+||+++.
T Consensus       165 ~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~~  206 (486)
T 2cu0_A          165 ESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARK  206 (486)
T ss_dssp             ------------------------------------------
T ss_pred             CcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHhh
Confidence            999999999999999999999999999999999999999864

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.33  E-value=5.7e-13  Score=128.54  Aligned_cols=115  Identities=22%  Similarity=0.355  Sum_probs=3.8

Q ss_pred             ccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHh
Q 017536           42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH  120 (369)
Q Consensus        42 ~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (369)
                      ++.++|.++++++++++++.+|+++|.+++++.+||+| +++++|+|+..|+....                        
T Consensus        96 ~~~~iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~~~------------------------  151 (494)
T 1vrd_A           96 KTENGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRFEK------------------------  151 (494)
T ss_dssp             TC------------------------------------------------------------------------------
T ss_pred             hHhhcCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHhhc------------------------
Confidence            46889999999999999999999999999999999998 68999999999986420                        


Q ss_pred             cCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHH
Q 017536          121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMR  198 (369)
Q Consensus       121 ~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~  198 (369)
                                        ....+++++|++..+++++++++++.++++.|.+++.+.+||+| +++++|++|.+|+++.
T Consensus       152 ------------------~~~~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~  212 (494)
T 1vrd_A          152 ------------------NLSKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSV  212 (494)
T ss_dssp             ---------------------------------------------------------------------------CHHH
T ss_pred             ------------------CCCCcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhh
Confidence                              01235888998433799999999999999999999999999999 8999999999999843

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.31  E-value=3.4e-11  Score=116.07  Aligned_cols=116  Identities=19%  Similarity=0.287  Sum_probs=101.7

Q ss_pred             ccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee---CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHH
Q 017536           42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE---NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE  118 (369)
Q Consensus        42 ~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd---~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~  118 (369)
                      ++.++|.++++++++++++.++++.|.+++++++||+|   +++++|+|+.+|++..                       
T Consensus        91 ~~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~-----------------------  147 (491)
T 1zfj_A           91 RSENGVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFI-----------------------  147 (491)
T ss_dssp             HHTTTTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHC-----------------------
T ss_pred             hHHhcCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhh-----------------------
Confidence            45789999999999999999999999999999999997   5899999999998642                       


Q ss_pred             HhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHH
Q 017536          119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM  197 (369)
Q Consensus       119 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~  197 (369)
                                         .....+++++|++ .+++++++++++.++++.|.+++.+.+||+| +++++|++|.+|++ 
T Consensus       148 -------------------~~~~~~v~~im~~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil-  206 (491)
T 1zfj_A          148 -------------------SDYNAPISEHMTS-EHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIE-  206 (491)
T ss_dssp             -------------------SCSSSBTTTSCCC-SCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHH-
T ss_pred             -------------------ccCCCcHHHHcCC-CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHH-
Confidence                               0124568999983 2788999999999999999999999999999 89999999999998 


Q ss_pred             HHHh
Q 017536          198 RVIS  201 (369)
Q Consensus       198 ~~~~  201 (369)
                      +.+.
T Consensus       207 ~~~~  210 (491)
T 1zfj_A          207 KVIE  210 (491)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            4443

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.29  E-value=6e-14  Score=135.85  Aligned_cols=117  Identities=24%  Similarity=0.303  Sum_probs=70.1

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeC----CEEEEEeehHHHHHHHHhcCCCcccccccccccc-
Q 017536          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTP-  217 (369)
Q Consensus       143 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~----~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~-  217 (369)
                      ++.++|.  ++++++++++++.+++++|.+++++.+||+|+    ++++|+||.+|+. ....   .....++.++|++ 
T Consensus       109 ~~~~im~--~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~-~~~~---~~~~~~v~~vm~~~  182 (514)
T 1jcn_A          109 NFEQGFI--TDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDID-FLAE---KDHTTLLSEVMTPR  182 (514)
T ss_dssp             TCCTTSC--SSCCCCCC-----------------CEESCC--------CCEECTTTTC--------------------CC
T ss_pred             hhhhccc--cCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHH-hhhh---ccCCCCHHHHhCCC
Confidence            4778898  57889999999999999999999999999984    7999999999995 3211   1125689999998 


Q ss_pred             -CCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHH
Q 017536          218 -NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (369)
Q Consensus       218 -~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~  265 (369)
                       +++++++++++.+++++|.+++.+.+||||++|+++|+||+.|+++++
T Consensus       183 ~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~  231 (514)
T 1jcn_A          183 IELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNR  231 (514)
T ss_dssp             BCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCC
T ss_pred             CCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHh
Confidence             899999999999999999999999999999999999999999988743

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.21  E-value=3.4e-12  Score=119.71  Aligned_cols=108  Identities=14%  Similarity=0.203  Sum_probs=0.8

Q ss_pred             ccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeC----CeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHH
Q 017536           44 SKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK  119 (369)
Q Consensus        44 ~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~----~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (369)
                      ...|..+|+++.|+.++.+|+++|.+++++.+||+++    ++++|++|.+|+-..                        
T Consensus       141 e~g~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~------------------------  196 (556)
T 4af0_A          141 ENGFITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQ------------------------  196 (556)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             ccCccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccccc------------------------
Confidence            3457778999999999999999999999999999984    689999999996321                        


Q ss_pred             hcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          120 HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       120 ~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                                         -...+++++|+  +++++++.+.++++|.++|.+++...+||+| +++++|+||.+|+.
T Consensus       197 -------------------d~~~~V~evMT--~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~  253 (556)
T 4af0_A          197 -------------------DAETPIKSVMT--TEVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLL  253 (556)
T ss_dssp             ------------------------------------------------------------------------------
T ss_pred             -------------------ccceEhhhhcc--cceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhh
Confidence                               11245889999  5799999999999999999999999999999 99999999999997

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.21  E-value=2.3e-12  Score=123.73  Aligned_cols=162  Identities=16%  Similarity=0.166  Sum_probs=22.9

Q ss_pred             cccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcC
Q 017536           43 VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWG  122 (369)
Q Consensus        43 v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  122 (369)
                      ..+.|..+++++++++++.++++.|.+++++++||+++++++|+++.+|++..                           
T Consensus        95 ~~~~m~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~~~lvGivt~~Dl~~~---------------------------  147 (486)
T 2cu0_A           95 AERLIVEDVITIAPDETVDFALFLMEKHGIDGLPVVEDEKVVGIITKKDIAAR---------------------------  147 (486)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             hhhccccCceEECCCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHhccC---------------------------
Confidence            45689999999999999999999999999999999988999999999997630                           


Q ss_pred             CCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHh
Q 017536          123 TSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVIS  201 (369)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~  201 (369)
                                       ...+++++|.  ++++++++++++.++++.|.+++.+.+||+| +++++|++|.+|++ +...
T Consensus       148 -----------------~~~~v~~im~--~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil-~~~~  207 (486)
T 2cu0_A          148 -----------------EGKLVKELMT--KEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLV-ARKK  207 (486)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             -----------------CCCCHHHHcc--CCCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHH-Hhhh
Confidence                             1224778887  4688999999999999999999999999999 89999999999998 4443


Q ss_pred             cCCCccccccccccccCCceecCCCCHHHHHHHHHhCCCceeeEEc-CCCcEEEEEe
Q 017536          202 QNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVD-RDGDVVDVVD  257 (369)
Q Consensus       202 ~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd-~~g~~~Givt  257 (369)
                      .... .......++..  ..+... . .+.+..+.+.+...+ |+| ..|...++++
T Consensus       208 ~~~~-~~~~~g~~~v~--~~~~~~-~-~~~a~~l~~~gvd~l-vvdta~G~~~~~L~  258 (486)
T 2cu0_A          208 YKNA-VRDENGELLVA--AAVSPF-D-IKRAIELDKAGVDVI-VVDTAHAHNLKAIK  258 (486)
T ss_dssp             CTTC-CBCTTSCBCCE--EEECTT-C-HHHHHHHHHTTCSEE-EEECSCCCCHHHHH
T ss_pred             cccc-ccccCCceeec--ceechh-h-HHHHHHHHHhcCCce-EEEecCCcEeehhh
Confidence            2110 00001111111  112233 3 566777888888765 555 3555555443

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.13  E-value=4.6e-12  Score=122.67  Aligned_cols=115  Identities=11%  Similarity=0.189  Sum_probs=68.1

Q ss_pred             ccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeC----CeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhH
Q 017536           42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV  117 (369)
Q Consensus        42 ~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~----~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~  117 (369)
                      ++.++|.++++++.+++++.+|+++|.+++++.+||+|+    ++++|+|+.+|+.... .                   
T Consensus       109 ~~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~-~-------------------  168 (514)
T 1jcn_A          109 NFEQGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLA-E-------------------  168 (514)
T ss_dssp             TCCTTSCSSCCCCCC-----------------CEESCC--------CCEECTTTTC------------------------
T ss_pred             hhhhccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhh-h-------------------
Confidence            678999999999999999999999999999999999985    7999999999975420 0                   


Q ss_pred             HHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          118 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       118 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                                          .....+++++|.+..+++++++++++.++++.|.+++...+||+| +|+++|++|.+|++
T Consensus       169 --------------------~~~~~~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll  228 (514)
T 1jcn_A          169 --------------------KDHTTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLK  228 (514)
T ss_dssp             --------------------------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCS
T ss_pred             --------------------ccCCCCHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHH
Confidence                                012345888898323799999999999999999999999999999 89999999999997

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=99.12  E-value=2.3e-11  Score=84.09  Aligned_cols=53  Identities=25%  Similarity=0.525  Sum_probs=48.2

Q ss_pred             CccCCcCEEEEEcCCCcEEEEEeHHHHHHHHHhccCCCcccccccccccCCeEE
Q 017536            1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFV   54 (369)
Q Consensus         1 M~~~~~~~~~V~d~~~~~~Givt~~Di~~~~~~~~~~~~~~~v~dim~~~~i~v   54 (369)
                      |.+++++++||+| +|+++||+|++||++++..++.++.+.+++++|+++++++
T Consensus        18 M~~~~i~~~~V~d-~~~lvGIvT~~Di~~~~~~~~~~~~~~~V~~iMt~~~iTV   70 (70)
T 3ghd_A           18 LSRNKAGSAVVME-GDEILGVVTERDILDKVVAKGKNPKEVKVEEIMTKNPVKI   70 (70)
T ss_dssp             HHHTTCSEEEEEE-TTEEEEEEEHHHHHHHTTTTTCCGGGCBGGGTCEECTTCC
T ss_pred             HHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHhcCCCcccCCHHHhcCCCCeEC
Confidence            6789999999998 6899999999999988888888888899999999998764

>2pli_A Uncharacterized protein; CORC-associated region, MCSG, PSI2, structural genomics, Pro structure initiative; 1.70A {Neisseria meningitidis} SCOP: d.145.1.4

Probab=97.64  E-value=2.3e-05  Score=56.66  Aligned_cols=52  Identities=10%  Similarity=0.050  Sum_probs=42.6

Q ss_pred             hcCCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEEEcCC-CceEEeec
Q 017536          292 MALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNK-GLMHRFTC  351 (369)
Q Consensus       292 ~~~~~~~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~-g~~~~~~~  351 (369)
                      +.+..++++++|++|++...++++|+.|+.+.+.++.        |+|.+++ +++.+.++
T Consensus        35 l~~~l~~~~~dTlgG~i~~~lg~iP~~Ge~v~~~~~~--------f~V~~~d~~rI~~v~v   87 (91)
T 2pli_A           35 FGTEYSSEEADTIGGLVIQELGHLPVRGEKVLIGGLQ--------FTVARADNRRLHTLMA   87 (91)
T ss_dssp             HCCCCCCSSCCBHHHHHHHHHSSCCCTTCEEEETTEE--------EEEEEECSSCEEEEEE
T ss_pred             hCCCCCCCCCccHHHHHHHHhCCCCCCCCEEEECCEE--------EEEEEEeCCEEEEEEE
Confidence            3344455679999999999999999999999999999        9999987 55655543

>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: d.145.1.0

Probab=97.61  E-value=1.7e-05  Score=56.30  Aligned_cols=52  Identities=12%  Similarity=0.065  Sum_probs=42.7

Q ss_pred             hhcCCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEEEcCCC-ceEEee
Q 017536          291 AMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKG-LMHRFT  350 (369)
Q Consensus       291 ~~~~~~~~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~  350 (369)
                      .+.+..++++++|++|++...++++|+.|+.+.+.++.        |+|.++++ ++.+.+
T Consensus        25 ~l~~~l~~~~~~Tl~G~i~~~lg~iP~~Gd~v~~~~~~--------f~V~~~~~~rI~~v~   77 (83)
T 3llb_A           25 FFGSEFSDEEFDTVGGLVMSAFGHLPKRNEVVELGEFR--------FRVLNADSRRVHLLR   77 (83)
T ss_dssp             HHCCCCCTTTCSBHHHHHHHHHSSCCCTTCEEEETTEE--------EEEEEECSSCEEEEE
T ss_pred             HhCCCCCCCCCcCHHHHHHHHhCcCCCCCCEEEECCEE--------EEEEEeeCCEEEEEE
Confidence            33444456679999999999999999999999999999        99999975 555544

>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} SCOP: d.145.1.4 PDB: 2o1r_A*

Probab=97.58  E-value=1.8e-05  Score=55.83  Aligned_cols=51  Identities=6%  Similarity=0.032  Sum_probs=41.9

Q ss_pred             hhcCCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEEEcCCC-ceEEe
Q 017536          291 AMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKG-LMHRF  349 (369)
Q Consensus       291 ~~~~~~~~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~  349 (369)
                      .+.+..++++++|++|++...++++|+.|+.+.+.++.        |+|.+++| ++.+.
T Consensus        25 ~l~~~l~~~~~~Tl~G~i~~~lg~iP~~Gd~v~~~~~~--------f~V~~~~~~rI~~v   76 (81)
T 3lae_A           25 MFNWELDTEDARTFNGLILEHLEEIPDEGTICEIDGLL--------ITILEVGDNMIKQA   76 (81)
T ss_dssp             HHCCCCCCSSCSBHHHHHHHHCSSCCCTTCEEEETTEE--------EEEEEEETTEEEEE
T ss_pred             HhCCCCCCCCCccHHHHHHHHhCCCCCCCCEEEECCEE--------EEEEEeeCCEEEEE
Confidence            33444556678999999999999999999999999999        99999865 45443

>2pls_A CBS domain protein; APC86064.2, CORC/HLYC transporter associated domain, CBS DOM protein, structural genomics, PSI-2 structure initiative; 2.15A {Chlorobium tepidum tls} SCOP: d.145.1.4

Probab=97.51  E-value=3.2e-05  Score=55.25  Aligned_cols=45  Identities=9%  Similarity=-0.038  Sum_probs=39.1

Q ss_pred             CCCccccccccccccCCCCccccccCCCCCCCCCCceeEEEEcCC-CceEEeec
Q 017536          299 DEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNK-GLMHRFTC  351 (369)
Q Consensus       299 ~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~-g~~~~~~~  351 (369)
                      ++++|++|++...++++|+.|+.+.+.++.        |+|.+++ +++.+..+
T Consensus        37 ~~~~Tl~G~i~~~lg~iP~~Gd~v~~~~~~--------f~V~~~~~~rI~~v~v   82 (86)
T 2pls_A           37 GVYHTLSGMIMWLLGRLPQTGDITFWENWR--------LEVIDMDSKRIDKVLA   82 (86)
T ss_dssp             CSCCBHHHHHHHHHTSCCCTTCEEEETTEE--------EEEEEEETTEEEEEEE
T ss_pred             CCcccHHHHHHHHhCCCCCCCCEEEECCEE--------EEEEEeeCCEEEEEEE
Confidence            578999999999999999999999999999        9999986 55655443

>2oai_A Hemolysin; PFAM03471, xylella fastidiosa temecula1, structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; HET: MLY; 1.80A {Xylella fastidiosa} SCOP: d.145.1.4 PDB: 2r8d_A*

Probab=97.47  E-value=3.1e-05  Score=56.31  Aligned_cols=45  Identities=4%  Similarity=0.118  Sum_probs=39.2

Q ss_pred             CCCccccccccccccCCCCccccccCCCCCCCCCCceeEEEEcCC-CceEEeec
Q 017536          299 DEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNK-GLMHRFTC  351 (369)
Q Consensus       299 ~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~-g~~~~~~~  351 (369)
                      ++|+|++|++...++++|+.|+.+.+.++.        |+|.+++ +++.+.++
T Consensus        45 ~~~dTlgG~i~~~lg~iP~~Gd~v~~~~~~--------f~V~~~d~~rI~~V~v   90 (94)
T 2oai_A           45 NNYHTLAGMCISYFGRIPHVGEYFDWAGWR--------IEIVDLDGARIDXLLL   90 (94)
T ss_dssp             CCCSBHHHHHHHHHSSCCCTTCEEEETTEE--------EEEEEEETTEEEEEEE
T ss_pred             CCCccHHHHHHHHhCCCCCCCCEEEECCEE--------EEEEEEcCCEEEEEEE
Confidence            568999999999999999999999999999        9999986 55655543

>2r2z_A Hemolysin; APC85144, enterococcus faecalis V583, STRU initiative, midwest center for structural genomics, MCSG; 1.20A {Enterococcus faecalis} SCOP: d.145.1.4

Probab=97.46  E-value=4.8e-05  Score=55.23  Aligned_cols=51  Identities=6%  Similarity=-0.012  Sum_probs=41.6

Q ss_pred             cCCCCCCCCccccccccccccCCCCccccccC--CCCCCCCCCceeEEEEcCC-CceEEeec
Q 017536          293 ALSPNDDEEDNRSEGSLKFASEGADTARYLSY--PSPSPGVPSAFAFKVQDNK-GLMHRFTC  351 (369)
Q Consensus       293 ~~~~~~~~~~T~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~v~~~~-g~~~~~~~  351 (369)
                      .+..++++++|++|++...++++|+.|+.+.+  .++.        |+|.+++ +++.+.++
T Consensus        34 ~~~l~~~~~~TlgG~i~~~lg~iP~~Gd~v~~~~~~~~--------f~V~~~~~~rI~~v~v   87 (93)
T 2r2z_A           34 ETDLHMSDVDTMAGYLITALGTIPDEGEKPSFEVGNIK--------LTAEEMEGTRLLVLRV   87 (93)
T ss_dssp             TCCCCCTTCCBHHHHHHHHHSSCCCTTCCCEEEETTEE--------EEEEEEETTEEEEEEE
T ss_pred             CCCCCCCCcccHHHHHHHHhCCCCCCCCEEEEecCCEE--------EEEEEeeCCEEEEEEE
Confidence            33445557999999999999999999999987  8889        9999986 55665544

>2p13_A CBS domain; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; 1.65A {Nitrosomonas europaea} SCOP: d.145.1.4

Probab=97.44  E-value=4e-05  Score=55.25  Aligned_cols=44  Identities=5%  Similarity=-0.086  Sum_probs=38.5

Q ss_pred             CCCccccccccccccCCCCccccccCCCCCCCCCCceeEEEEcCC-CceEEee
Q 017536          299 DEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNK-GLMHRFT  350 (369)
Q Consensus       299 ~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~-g~~~~~~  350 (369)
                      ++|+|++|++...++++|+.|+.+.+.++.        |+|.+++ +++.+..
T Consensus        41 ~~~~TlgG~i~~~lg~iP~~Gd~v~~~~~~--------f~V~~~d~~rI~~v~   85 (90)
T 2p13_A           41 ERYSTLGGYLLWQFGYIPAAGEQITVDGLI--------FEIVSVNKHNIGKVR   85 (90)
T ss_dssp             CCCCBHHHHHHHHHSSCCCTTCEEEETTEE--------EEECCBCSSSBCEEE
T ss_pred             CCCccHHHHHHHHhCCCCCCCCEEEECCEE--------EEEEEEeCCEEEEEE
Confidence            578999999999999999999999999999        9999987 5555443

>2p4p_A Hypothetical protein HD1797; CORC_HLYC, PFAM: PF03471, structural GE PSI-2, protein structure initiative, midwest center for STR genomics; HET: MLY MSE; 1.80A {Haemophilus ducreyi} SCOP: d.145.1.4

Probab=97.42  E-value=5.1e-05  Score=54.19  Aligned_cols=45  Identities=7%  Similarity=0.101  Sum_probs=39.1

Q ss_pred             CCCccccccccccccCCCCccccccCCCCCCCCCCceeEEEEcCC-CceEEeec
Q 017536          299 DEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNK-GLMHRFTC  351 (369)
Q Consensus       299 ~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~-g~~~~~~~  351 (369)
                      ++++|++|++...++++|+.|+.+.+.++.        |+|.+++ +++.+..+
T Consensus        35 ~~~~Tl~G~i~~~lg~iP~~Gd~v~~~~~~--------f~V~~~~~~rI~~v~v   80 (86)
T 2p4p_A           35 ENYETIGGFMMYMLRXIPXXTDFVLYDXYX--------FEIIDTENFRIDQLMV   80 (86)
T ss_dssp             CSSCBHHHHHHHHHCSCCCTTCEEEETTEE--------EEEEEEETTEEEEEEE
T ss_pred             CCCccHHHHHHHHhCCCCCCCcEEEEeeEE--------EEEEEccCCEEEEEEE
Confidence            579999999999999999999999999999        9999986 55655443

>2o3g_A Putative protein; APC85631.1, neisseria meningitid structural genomics, PSI-2, protein structure initiative; 2.55A {Neisseria meningitidis} SCOP: d.145.1.4

Probab=97.41  E-value=3.4e-05  Score=55.90  Aligned_cols=53  Identities=11%  Similarity=0.161  Sum_probs=42.5

Q ss_pred             hhcCC-CC-CCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEEEcCC-CceEEeec
Q 017536          291 AMALS-PN-DDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNK-GLMHRFTC  351 (369)
Q Consensus       291 ~~~~~-~~-~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~-g~~~~~~~  351 (369)
                      .+.+. .+ +++|+|++|++...++++|+.|+.+.+.++.        |+|.+++ +++.+..+
T Consensus        33 ~l~~~~l~~~~~~~Tl~G~i~~~lg~iP~~Gd~v~~~~~~--------f~V~~~~~~rI~~V~v   88 (92)
T 2o3g_A           33 QLNLPQQEEDADFHTVAGLIMEELQTIPDVGDFADFHGWR--------FEVVEKEGQRIERVKI   88 (92)
T ss_dssp             TTTCCCCCTTCSCSBHHHHHHHHHTSCCCTTCEEEETTEE--------EEEEEEETTEEEEEEE
T ss_pred             HhCCCCCCcCCCcccHHHHHHHHhCCCCCCCCEEEECCEE--------EEEEEeeCCEEEEEEE
Confidence            33444 44 4579999999999999999999999999999        9999986 55655443

>2p3h_A Uncharacterized CBS domain-containing protein; structural genomics, CORC_HLYC, PFAM03471, putative transpor protein; 1.80A {Corynebacterium glutamicum} SCOP: d.145.1.4

Probab=97.37  E-value=4.9e-05  Score=55.76  Aligned_cols=50  Identities=16%  Similarity=0.147  Sum_probs=41.6

Q ss_pred             cCCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEEEcCCCc------eEEeec
Q 017536          293 ALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGL------MHRFTC  351 (369)
Q Consensus       293 ~~~~~~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g~------~~~~~~  351 (369)
                      .+..++++++|++|++...++++|+.|+.+.++ +.        |+|.+++|+      +.+.++
T Consensus        30 g~~l~~e~~dTlgGli~~~lg~iP~~Gd~v~~~-~~--------f~V~~~d~~~~~r~rI~~V~v   85 (101)
T 2p3h_A           30 GYELPEGDYETISGLLFDHANALLKTGDVIEIP-LD--------FEPEDYLNNTSPTQRILRITV   85 (101)
T ss_dssp             TSCCCCSSCCBHHHHHHHHHCSCCCTTCEEEEE-CC--------CCGGGGTTCSSCCCCEEEEEE
T ss_pred             CCCCCCCCCccHHHHHHHHhCCCCCCCCEEEEe-EE--------EEEEEEeCCCCcCCEEEEEEE
Confidence            334455679999999999999999999999999 99        999999854      665544

>2rk5_A Putative hemolysin; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics, membrane; 1.50A {Streptococcus mutans UA159} SCOP: d.145.1.4

Probab=97.32  E-value=5e-05  Score=54.37  Aligned_cols=53  Identities=11%  Similarity=0.011  Sum_probs=41.8

Q ss_pred             hhcCCCCCCCCccccccccccccCCCCccc--cccCCC----CCCCCCCceeEEEEcCC-CceEEeec
Q 017536          291 AMALSPNDDEEDNRSEGSLKFASEGADTAR--YLSYPS----PSPGVPSAFAFKVQDNK-GLMHRFTC  351 (369)
Q Consensus       291 ~~~~~~~~~~~~T~~~~~~~~~~~~~~~g~--~~~~~~----~~~~~~~~~~~~v~~~~-g~~~~~~~  351 (369)
                      .+.+..++++++|++|++...++++|+.|+  .+.+.+    +.        |+|.+++ +++.+..+
T Consensus        24 ~l~~~l~~~~~dTl~G~v~~~lg~iP~~Gd~~~v~~~~~~~~~~--------f~V~~~~~~rI~~v~v   83 (87)
T 2rk5_A           24 YFETDLESDNVDTIAGFYLTGVGTIPSQEEKEHFEVESNGKHLE--------LINDKVKDGRVTKLKI   83 (87)
T ss_dssp             HHTCCCCCTTCCBHHHHHHHHHCSCCCSSSCCEEEEEETTEEEE--------EEEEEEETTEEEEEEE
T ss_pred             HhCCCCCCCCcccHHHHHHHHhCcCCCCCCcEEEEECCceEEEE--------EEEEEEeCCEEEEEEE
Confidence            334444556799999999999999999999  888887    78        9999986 55555443

>2nqw_A CBS domain protein; PFAM03471, hemolysins, CBS domains, transporter associated D CORC_HLYC, structural genomics, PSI-2; 1.30A {Porphyromonas gingivalis} SCOP: d.145.1.4

Probab=97.29  E-value=0.0001  Score=53.45  Aligned_cols=45  Identities=20%  Similarity=0.135  Sum_probs=39.6

Q ss_pred             CCCccccccccccccCCCCccccccCCCCCCCCCCceeEEEEcCC-CceEEeec
Q 017536          299 DEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNK-GLMHRFTC  351 (369)
Q Consensus       299 ~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~-g~~~~~~~  351 (369)
                      ++++|++|++...++++|..|+.+.+.++.        |+|.+++ +++.+..+
T Consensus        44 ~~~~TlgG~i~~~lg~iP~~Gd~v~~~~~~--------f~V~~~d~~rI~~V~v   89 (93)
T 2nqw_A           44 DEVDTLSGLFLEIKQELPHVGDTAVYEPFR--------FQVTQMDKRRIIEIKI   89 (93)
T ss_dssp             TTCSBHHHHHHHHHCSCCCTTCEEEETTEE--------EEEEEECSSSEEEEEE
T ss_pred             CCcccHHHHHHHHhCcCCCCCCEEEECCEE--------EEEEEeeCCEEEEEEE
Confidence            468999999999999999999999999999        9999986 66666554

>3ded_A Probable hemolysin; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG, membrane; HET: MSE; 2.14A {Chromobacterium violaceum} SCOP: d.145.1.4

Probab=97.16  E-value=0.0001  Score=55.46  Aligned_cols=44  Identities=11%  Similarity=0.048  Sum_probs=38.4

Q ss_pred             CCCccccccccccccCCCCccccccCCCCCCCCCCceeEEEEcCCC-ceEEee
Q 017536          299 DEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKG-LMHRFT  350 (369)
Q Consensus       299 ~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~  350 (369)
                      ++|+|++|++...++++|+.|+.+.+.++.        |+|.+++| ++.+.+
T Consensus        64 ~~~dTlgGlil~~lg~iP~~Gd~v~~~g~~--------f~V~~~d~~RI~~V~  108 (113)
T 3ded_A           64 GNIHTLAGVMLYQLGRVPSVTDRFEWNGFS--------FEVVDMDRTRVDKIL  108 (113)
T ss_dssp             TCCCBHHHHHHHHHCSSCCTTCEEEETTEE--------EEEEEEETTEEEEEE
T ss_pred             CCCccHHHHHHHHhCCCCCCCCEEEECCEE--------EEEEEEeCCeEEEEE
Confidence            568999999999999999999999999999        99999965 454443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	369
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	6e-15
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	7e-08
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	4e-04
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	8e-12
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	1e-04
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	3e-11
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	0.001
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	1e-10
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	4e-05
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	6e-10
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	1e-06
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	5e-06
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	0.004
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	1e-09
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	2e-05
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	0.001
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	1e-09
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	1e-07
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	4e-05
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	3e-09
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	9e-07
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	1e-06
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	3e-09
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	0.003
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	0.004
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	7e-09
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	0.001
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	0.002
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	1e-08
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	5e-05
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	5e-04
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	8e-04
d1zfja4	126	d.37.1.1 (A:95-220) Type II inosine monophosphate	1e-08
d1pbja3	120	d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {A	3e-08
d1pbja3	120	d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {A	8e-05
d1pbja3	120	d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {A	0.003
d2yvxa2	144	d.37.1.1 (A:132-275) Magnesium transporter MgtE {T	4e-08
d2yvxa2	144	d.37.1.1 (A:132-275) Magnesium transporter MgtE {T	0.003
d2riha1	131	d.37.1.1 (A:2-132) Uncharacterized protein PAE2072	5e-08
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	5e-08
d2ouxa2	127	d.37.1.1 (A:136-262) Magnesium transporter MgtE {E	5e-08
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	9e-08
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	9e-05
d3ddja2	135	d.37.1.1 (A:1-135) Uncharacterized protein SSO3205	2e-07
d3ddja2	135	d.37.1.1 (A:1-135) Uncharacterized protein SSO3205	0.001
d3ddja2	135	d.37.1.1 (A:1-135) Uncharacterized protein SSO3205	0.002
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	5e-07
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	7e-06
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	8e-06
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	6e-04
d2ooxe2	153	d.37.1.1 (E:182-334) Uncharacterized protein C1556	3e-06
d2ooxe2	153	d.37.1.1 (E:182-334) Uncharacterized protein C1556	2e-04
d2yzqa2	122	d.37.1.1 (A:1-122) Uncharacterized protein PH1780	4e-06
d2yzqa2	122	d.37.1.1 (A:1-122) Uncharacterized protein PH1780	0.003
d3ddja1	141	d.37.1.1 (A:136-276) Uncharacterized protein SSO32	7e-06
d3ddja1	141	d.37.1.1 (A:136-276) Uncharacterized protein SSO32	0.002
d1vr9a3	121	d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB	5e-05
d1vr9a3	121	d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB	0.004
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	1e-04
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	0.001

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 68.6 bits (167), Expect = 6e-15
 Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 1/116 (0%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 211
             VV I P D+V  A +KM    + + +V  + K  GILT +D   +    + P   T V
Sbjct: 13  HTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLLDKPVKDTQV 72

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA 267
           +++MT       ++    D + ++ + +  HLPV+D DG V+ ++ +  +   A++
Sbjct: 73  KEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAIS 127

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 48.6 bits (115), Expect = 7e-08
 Identities = 32/98 (32%), Positives = 58/98 (59%), Gaps = 1/98 (1%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAA  + ALL+     L+ GILT++D + +    +  +++T V ++MTR   +V  +   
Sbjct: 31  MAADNIGALLVMKDEKLV-GILTERDFSRKSYLLDKPVKDTQVKEIMTRQVAYVDLNNTN 89

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIA 98
            + +  + + + RHLPV+++G+VI LL I   + DAI+
Sbjct: 90  EDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKDAIS 127

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 37.8 bits (87), Expect = 4e-04
 Identities = 20/162 (12%), Positives = 43/162 (26%), Gaps = 41/162 (25%)

Query: 43  VSKVMT---RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIAR 99
           V  ++         +  D     A+QKM       L V+++ +++ +L        +   
Sbjct: 4   VKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLL 63

Query: 100 MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISP 159
                                                                +V  +  
Sbjct: 64  D--------------------------------------KPVKDTQVKEIMTRQVAYVDL 85

Query: 160 TDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVIS 201
            +T       + E+R+    V  + K  G+L+  D++   IS
Sbjct: 86  NNTNEDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKDAIS 127

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.2 bits (145), Expect = 8e-12
 Identities = 21/130 (16%), Positives = 43/130 (33%), Gaps = 7/130 (5%)

Query: 148 IPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVE-NKPRGILTSKDILMRVISQNLPA 206
           I   + +  +  T  V +A    ++ R+S+  V  E  +   I +  D++     +    
Sbjct: 16  IGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNN 75

Query: 207 DSTL------VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIH 260
                                  +   +   ++ + + +   L VVD    V  +V +  
Sbjct: 76  LDVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSD 135

Query: 261 ITHAAVATVG 270
           I  A V T G
Sbjct: 136 ILQALVLTGG 145

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.4 bits (91), Expect = 1e-04
 Identities = 17/103 (16%), Positives = 32/103 (31%), Gaps = 10/103 (9%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEET------PVSKVMTRNPTFV 54
               RV AL + D    +  I +  D+      +  N  +                    
Sbjct: 38  FVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSHYFEGVLKC 97

Query: 55  LSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCL 93
                    + ++V+ +   L VV E+  V  ++   DI + L
Sbjct: 98  YLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQAL 140

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 57.8 bits (139), Expect = 3e-11
 Identities = 15/107 (14%), Positives = 34/107 (31%), Gaps = 2/107 (1%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGIL--TSKDILMRVISQNLPADST 209
           +  V +SP D V    +           +T   +    L        +  + +       
Sbjct: 4   TDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEHDRFL 63

Query: 210 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
                   +   A     + +A  I+   K   LP+V+ + ++V ++
Sbjct: 64  EEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAII 110

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 36.3 bits (83), Expect = 0.001
 Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 4/105 (3%)

Query: 93  LYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKS 152
           + D      R    G  I        +  G   S     I+ L+E      L  I+ ++ 
Sbjct: 15  VRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRD---IDFLKEEEHDRFLEEIMTKRE 71

Query: 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDIL 196
            +V      T+  A + +   +     +  EN +   I+   D+ 
Sbjct: 72  DLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLK 116

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 57.4 bits (137), Expect = 1e-10
 Identities = 19/155 (12%), Positives = 40/155 (25%), Gaps = 11/155 (7%)

Query: 42  PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARME 101
            V  +M R+ T + S +   + L  + Q K +  P V+               + +    
Sbjct: 12  QVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDT-----------PDTNTLLGSI 60

Query: 102 RAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTD 161
              E    +   +    +     +          +                    +    
Sbjct: 61  DRTEVEGLLQRRISAYRRQPFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGT 120

Query: 162 TVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196
           ++         L L  A VT   K  G++   +I 
Sbjct: 121 SLQKTHTLFSLLGLDRAYVTSMGKLVGVVALAEIQ 155

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 41.6 bits (96), Expect = 4e-05
 Identities = 9/65 (13%), Positives = 23/65 (35%), Gaps = 3/65 (4%)

Query: 30  RVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALL-- 87
           R   RE N+     +  + ++P  ++  T   +              V   G+++ ++  
Sbjct: 92  RWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSMGKLVGVVAL 151

Query: 88  -DIAK 91
            +I  
Sbjct: 152 AEIQA 156

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 54.8 bits (131), Expect = 6e-10
 Identities = 25/114 (21%), Positives = 57/114 (50%), Gaps = 1/114 (0%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 211
            K++ + P+ +V  A++ M+E  + S VV  ++       +K  ++R +          V
Sbjct: 13  KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPV 72

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 265
           E++MT N   A ++TP+ + L  M + +  H+ + + +G +V +  +  +  A+
Sbjct: 73  ERIMTRNLITANVNTPLGEVLRKMAEHRIKHILIEE-EGKIVGIFTLSDLLEAS 125

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 45.2 bits (106), Expect = 1e-06
 Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 1/103 (0%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M    V +L++ + +  + G  T  DI  RVI   L   + PV ++MTRN      +T  
Sbjct: 31  MMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLP-YDIPVERIMTRNLITANVNTPL 89

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERA 103
            E L+KM + + +H+ + E G+++ +  ++  L  +  R+E A
Sbjct: 90  GEVLRKMAEHRIKHILIEEEGKIVGIFTLSDLLEASRRRLETA 132

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 43.2 bits (101), Expect = 5e-06
 Identities = 23/157 (14%), Positives = 43/157 (27%), Gaps = 38/157 (24%)

Query: 40  ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIAR 99
           + P+   MT+    V   T   EA + M++     L V+                     
Sbjct: 4   KAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIN-------------------- 43

Query: 100 MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISP 159
                             +          +  I  +        +         ++T + 
Sbjct: 44  ------------------DDGNVVGFFTKSDIIRRVIVPGLPYDIPVERIMTRNLITANV 85

Query: 160 TDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196
              +    +KM E R+   ++  E K  GI T  D+L
Sbjct: 86  NTPLGEVLRKMAEHRIKHILIEEEGKIVGIFTLSDLL 122

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 35.2 bits (80), Expect = 0.004
 Identities = 12/54 (22%), Positives = 21/54 (38%)

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264
           ++  MT         T + +A  +M +     L V++ DG+VV       I   
Sbjct: 7   IKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRR 60

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.4 bits (130), Expect = 1e-09
 Identities = 22/127 (17%), Positives = 46/127 (36%), Gaps = 17/127 (13%)

Query: 147 IIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVEN--KPRGILTSKDILMRVISQNL 204
           +IP  SK+V    +  V  A   ++   + +A +         G+LT  D +  +     
Sbjct: 18  LIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYK 77

Query: 205 PADSTL--------------VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRD- 249
            A   +                +       C + +  + DA+  +   K   LPV+D + 
Sbjct: 78  SALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPES 137

Query: 250 GDVVDVV 256
           G+ + ++
Sbjct: 138 GNTLYIL 144

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.7 bits (97), Expect = 2e-05
 Identities = 18/109 (16%), Positives = 34/109 (31%), Gaps = 19/109 (17%)

Query: 8   ALLLTDSNALLCGILTDKDIATRVIARELNLEET--------------PVSKVMTRNPTF 53
           A L         G+LT  D    +     +                     +   +    
Sbjct: 49  APLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVC 108

Query: 54  VLSDTLAVEALQKMVQGKFRHLPVV--ENGEVIALL---DIAKCLYDAI 97
           +  +    +A+  +++ K   LPV+  E+G  + +L    I K L   I
Sbjct: 109 ISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFI 157

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.1 bits (85), Expect = 0.001
 Identities = 24/173 (13%), Positives = 52/173 (30%), Gaps = 31/173 (17%)

Query: 38  LEETPVSKVMT-RNPTFVLSDTLAV-EALQKMVQGKFRHLPVV--ENGEVIALLDIAKCL 93
           ++      ++   +   V   +L V +A   +V    R  P+   +    + +L I   +
Sbjct: 10  MKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFI 69

Query: 94  YDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSK 153
                         K+    +  +E+H   +                             
Sbjct: 70  N-------ILHRYYKSALVQIYELEEHKIETWREVYLQDSF-----------------KP 105

Query: 154 VVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNL 204
           +V ISP  ++  A   ++  ++    V          ILT K IL + +   +
Sbjct: 106 LVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRIL-KFLKLFI 157

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.0 bits (129), Expect = 1e-09
 Identities = 17/127 (13%), Positives = 43/127 (33%), Gaps = 8/127 (6%)

Query: 147 IIPEKSKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLP 205
           II  +  + +   T  V+   + + + R+SS  ++        +  + D+L  +      
Sbjct: 13  IIT-QDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYN 71

Query: 206 ------ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVI 259
                  ++ +            T +  +   +  +   +     VVD  G +V V+ + 
Sbjct: 72  DLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLS 131

Query: 260 HITHAAV 266
            I    +
Sbjct: 132 DILKYIL 138

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (113), Expect = 1e-07
 Identities = 13/89 (14%), Positives = 36/89 (40%)

Query: 214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTA 273
           +   N +   + TP++D + ++  G+   +P++D +G +++V +   +       + N  
Sbjct: 14  ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDL 73

Query: 274 GSNNEAASTMMQKFWDSAMALSPNDDEED 302
             +   A       ++     + ND    
Sbjct: 74  SLSVGEALMRRSDDFEGVYTCTKNDKLST 102

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.9 bits (95), Expect = 4e-05
 Identities = 21/155 (13%), Positives = 46/155 (29%), Gaps = 32/155 (20%)

Query: 43  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMER 102
           ++ +   N       T  ++ +Q + QG+   +P+++    +  +  A  +   I     
Sbjct: 11  LNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGG-- 68

Query: 103 AAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDT 162
                                        I          +L     +   V T +  D 
Sbjct: 69  -----------------------------IYNDLSLSVGEALMRRSDDFEGVYTCTKNDK 99

Query: 163 VLMATKKMLELRLSSAVVTVEN-KPRGILTSKDIL 196
           +      + + R+    V  +  +  G+LT  DIL
Sbjct: 100 LSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDIL 134

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 53.5 bits (127), Expect = 3e-09
 Identities = 24/158 (15%), Positives = 46/158 (29%), Gaps = 9/158 (5%)

Query: 40  ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIAR 99
              +     R  + V   T    AL+ ++      LPVV+             +      
Sbjct: 3   GVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVD--------SEGNLVGIVDET 54

Query: 100 MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISP 159
                 +   I  + E         I   +  +   +  +  P+          V+  +P
Sbjct: 55  DLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATP 114

Query: 160 TDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDIL 196
             TV     KM +  +    V+  E    G++   D+L
Sbjct: 115 HMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLL 152

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 46.2 bits (108), Expect = 9e-07
 Identities = 15/94 (15%), Positives = 32/94 (34%)

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVG 270
           +E             TP+  AL  +     + LPVVD +G++V +VD   +   +     
Sbjct: 6   IEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRI 65

Query: 271 NTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNR 304
             +     ++           +     + +  N+
Sbjct: 66  MKSTELAASSEEEWILESHPTLLFEKFELQLPNK 99

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 45.8 bits (107), Expect = 1e-06
 Identities = 22/146 (15%), Positives = 43/146 (29%), Gaps = 30/146 (20%)

Query: 151 KSKVVTISPTDTVLMATKKMLELRLSSAVVTVE-NKPRGILTSKDILMRVISQNLPADST 209
           +  V  +     +  A K +L     +  V        GI+   D+L       +   + 
Sbjct: 11  QRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTE 70

Query: 210 L-----------------------------VEKVMTPNPECATIDTPIVDALHIMHDGKF 240
           L                             V ++MT +   AT    + +    M     
Sbjct: 71  LAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSI 130

Query: 241 LHLPVVDRDGDVVDVVDVIHITHAAV 266
             LPV+  +GD++ ++    +    V
Sbjct: 131 EQLPVIRGEGDLIGLIRDFDLLKVLV 156

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 53.0 bits (126), Expect = 3e-09
 Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 1/114 (0%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVE-NKPRGILTSKDILMRVISQNLPADSTL 210
           S   T++   TV  A K M E  L   VV  +     G+L+ + I+ R I +N   D   
Sbjct: 11  SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVP 70

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264
           +  VM         D  + D    + +       VVD  G VV +V +  ++  
Sbjct: 71  IRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRY 124

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 35.3 bits (80), Expect = 0.003
 Identities = 17/82 (20%), Positives = 29/82 (35%)

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVG 270
           VEK+M  N +    +T + DA+ IM++     L V D +G+ V ++    I    +    
Sbjct: 5   VEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNK 64

Query: 271 NTAGSNNEAASTMMQKFWDSAM 292
                              S  
Sbjct: 65  KPDEVPIRLVMRKPIPKVKSDY 86

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 35.3 bits (80), Expect = 0.004
 Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 4/100 (4%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M    +  L++ D N    G+L+++ I  R I R    +E P+  VM +    V SD   
Sbjct: 29  MNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPIPKVKSDYDV 88

Query: 61  VEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDA 96
            +    + +       VV + G V+ ++   D+++ L  A
Sbjct: 89  KDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSRA 128

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 51.4 bits (122), Expect = 7e-09
 Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 2/114 (1%)

Query: 151 KSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTL 210
           K++V++++    +    K M E  + S +V   NKP GI+T +DI+  +      +  T 
Sbjct: 11  KTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGKGK--SLETK 68

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264
            E+ MT +      D+PI  AL +M      HLPVVD  G++  ++ +  IT A
Sbjct: 69  AEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRA 122

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 9/43 (20%), Positives = 16/43 (37%)

Query: 38 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN 80
          +EE  V + M      V  D    +  + M +     + VV+ 
Sbjct: 1  MEEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDG 43

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 35.6 bits (81), Expect = 0.002
 Identities = 8/40 (20%), Positives = 16/40 (40%)

Query: 207 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVV 246
           +  +V++ M       T D  + D   +M +     + VV
Sbjct: 2   EEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVV 41

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 51.0 bits (121), Expect = 1e-08
 Identities = 18/106 (16%), Positives = 52/106 (49%), Gaps = 2/106 (1%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVISQNLPADSTL 210
           + V  +   +T+  A + M E  + +  +  ++ +  G+LT +DI+++ ++  L  ++  
Sbjct: 9   AGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTAT 68

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
             ++   +      +  I + L++M + +   +PV+  +  +V +V
Sbjct: 69  AGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVIS-EHRLVGIV 113

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 40.2 bits (93), Expect = 5e-05
 Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 3/96 (3%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M    + AL +   +  L G+LTD+DI  + +A  L+       ++   +  +V ++   
Sbjct: 27  MREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDSIYYVDANASI 86

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALL---DIAKCL 93
            E L  M + + R +PV+    ++ ++   DIA+ L
Sbjct: 87  QEMLNVMEEHQVRRVPVISEHRLVGIVTEADIARHL 122

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 37.2 bits (85), Expect = 5e-04
 Identities = 20/156 (12%), Positives = 42/156 (26%), Gaps = 37/156 (23%)

Query: 41  TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARM 100
           T    +M    T V        A Q M +     LP+  +                    
Sbjct: 1   TTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGD-------------------- 40

Query: 101 ERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPT 160
                            +      ++  +  I+ L   +   + +     +  +  +   
Sbjct: 41  -----------------DDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDSIYYVDAN 83

Query: 161 DTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196
            ++      M E ++    V  E++  GI+T  DI 
Sbjct: 84  ASIQEMLNVMEEHQVRRVPVISEHRLVGIVTEADIA 119

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 36.8 bits (84), Expect = 8e-04
 Identities = 9/58 (15%), Positives = 17/58 (29%)

Query: 209 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 266
           T    +M     C      +  A   M +     LP+   D  +  ++    I    +
Sbjct: 1   TTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGL 58

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} Length = 126

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 50.7 bits (120), Expect = 1e-08
 Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 14/121 (11%)

Query: 154 VVTISPTDTVLMATKKMLELRLSSAVVTVE---NKPRGILTSKDILMRVISQNLPADSTL 210
              ++P   V  A + M   R+S   +       K  GI+T++D+           ++ +
Sbjct: 7   PFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDY-----NAPI 61

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV------DVVDVIHITHA 264
            E + + +   A + T +  A  I+H+ +   LP+VD  G +       D+  VI   HA
Sbjct: 62  SEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEFPHA 121

Query: 265 A 265
           A
Sbjct: 122 A 122

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 49.5 bits (117), Expect = 3e-08
 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 2/115 (1%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 211
           + V TI  T ++    +  +E    S+VV  E    GI+T+ D+ +  I++        V
Sbjct: 8   TDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDV-LEAIAEGDDLAEVKV 66

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 266
            +VM  +    +    I +A   M       L V + D +++ V+    I  A +
Sbjct: 67  WEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEE-DDEIIGVISATDILRAKM 120

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 39.8 bits (92), Expect = 8e-05
 Identities = 25/154 (16%), Positives = 50/154 (32%), Gaps = 39/154 (25%)

Query: 43  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMER 102
           V  VM  +   +       + L+  V+       VV+ G  +                  
Sbjct: 2   VEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRV------------------ 43

Query: 103 AAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDT 162
                                 I      +E + E      +      +  +VTISP  T
Sbjct: 44  ---------------------GIVTTWDVLEAIAEGDDLAEVKVWEVMERDLVTISPRAT 82

Query: 163 VLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196
           +  A +KM++  +   +V  +++  G++++ DIL
Sbjct: 83  IKEAAEKMVKNVVWRLLVEEDDEIIGVISATDIL 116

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 35.2 bits (80), Expect = 0.003
 Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 5/94 (5%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
                  + ++      +   +         IA   +L E  V +VM R+   +      
Sbjct: 26  YVENAKGSSVVVKEGVRVG--IVTTWDVLEAIAEGDDLAEVKVWEVMERDLVTISPRATI 83

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALL---DIAK 91
            EA +KMV+     L V E+ E+I ++   DI +
Sbjct: 84  KEAAEKMVKNVVWRLLVEEDDEIIGVISATDILR 117

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} Length = 144

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

 Score = 49.8 bits (118), Expect = 4e-08
 Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 19/121 (15%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLS------SAVVTVENKPRGILTSKDILMRVISQNLP 205
            + V +    TV    + +              VV  + + +G+L+ +D+++        
Sbjct: 9   PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVAD------ 62

Query: 206 ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV------DVVDVI 259
              T V ++M P       DT   +   +M D  F  LPVVD +G +V      DV+DV+
Sbjct: 63  -PRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVL 121

Query: 260 H 260
            
Sbjct: 122 E 122

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} Length = 144

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

 Score = 35.6 bits (81), Expect = 0.003
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 5/80 (6%)

Query: 40  ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALLDIAKCLYDAIA 98
            T V+++M     +V +DT   E  + M    F  LPVV E G ++ ++ +     D + 
Sbjct: 64  RTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTV----DDVLD 119

Query: 99  RMERAAEKGKAIAAAVEGVE 118
            +E  A +      AV+  +
Sbjct: 120 VLEAEATEDIHKLGAVDVPD 139

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]} Length = 131

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

 Score = 49.2 bits (116), Expect = 5e-08
 Identities = 20/114 (17%), Positives = 45/114 (39%)

Query: 151 KSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTL 210
           K   V++  T T+     ++ + R+  AV+T  + P+  +        + +     D   
Sbjct: 8   KRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLDG 67

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264
               +  +P       P+  A   M      H+ VV+++G++V V+ +  +   
Sbjct: 68  PAMPIANSPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFE 121

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 50.0 bits (118), Expect = 5e-08
 Identities = 19/152 (12%), Positives = 50/152 (32%), Gaps = 20/152 (13%)

Query: 132 IETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPR--GI 189
           ++ ++  +   +   ++P   +++    T  V  +   +    + SA +      +  G+
Sbjct: 10  LKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGL 69

Query: 190 LTSKDILMRVISQNLPA------------------DSTLVEKVMTPNPECATIDTPIVDA 231
           LT  D +  +      +                  +       + P          ++DA
Sbjct: 70  LTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDA 129

Query: 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263
              M   +   +P++D DG+    + V  +T 
Sbjct: 130 CLAMSKSRARRIPLIDVDGETGSEMIVSVLTQ 161

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

 Score = 49.0 bits (116), Expect = 5e-08
 Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 13/118 (11%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVIS---QNLPADS 208
           ++ V+I    TV  A   +      +  +        ++  ++ L+ VIS     +  D 
Sbjct: 9   TEFVSIVANQTVRSAMYVLKNQADMAETIYY----VYVVDQENHLVGVISLRDLIVNDDD 64

Query: 209 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV------DVVDVIH 260
           TL+  ++        +     D    + D  FL +PV D D  ++      D++DVI 
Sbjct: 65  TLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVID 122

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 48.8 bits (115), Expect = 9e-08
 Identities = 23/128 (17%), Positives = 47/128 (36%), Gaps = 16/128 (12%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPR-GILTSKDILMRVISQNL------ 204
            K   +     +     ++LE  ++  V    +    G++    +L              
Sbjct: 12  LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKE 71

Query: 205 --------PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
                      +    ++M  +P    +DTP+ +AL +M D     +PVVD  G++V  +
Sbjct: 72  ELIRSSMKRLIAKNASEIML-DPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDL 130

Query: 257 DVIHITHA 264
           + + I  A
Sbjct: 131 NSLEILLA 138

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 40.0 bits (92), Expect = 9e-05
 Identities = 30/155 (19%), Positives = 46/155 (29%), Gaps = 25/155 (16%)

Query: 43  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMER 102
           V K+++  PT V  DT   E + ++++        V              L   I  M  
Sbjct: 6   VCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARD---------NKLVGMIPVMHL 56

Query: 103 AAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDT 162
                           K  G    G     E +R  M R             V +     
Sbjct: 57  L---------------KVSGFHFFGFIPKEELIRSSMKRLIAKNASEIMLDPVYVHMDTP 101

Query: 163 VLMATKKMLELRLSSAVVTVEN-KPRGILTSKDIL 196
           +  A K M++  +    V  E  +  G L S +IL
Sbjct: 102 LEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEIL 136

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 135

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 47.7 bits (112), Expect = 2e-07
 Identities = 26/122 (21%), Positives = 39/122 (31%), Gaps = 8/122 (6%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVEN--------KPRGILTSKDILMRVISQN 203
                +S  D +  A KK+ E  +   +V  E              + S           
Sbjct: 9   KNPPILSKEDRLGSAFKKINEGGIGRIIVANEKIEGLLTTRDLLSTVESYCKDSCSQGDL 68

Query: 204 LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263
               +T +   MTPNP      +    A++IM    F  LPVVD +   V +V       
Sbjct: 69  YHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLL 128

Query: 264 AA 265
             
Sbjct: 129 LY 130

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 135

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 7/41 (17%), Positives = 18/41 (43%)

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGD 251
           +E +M  NP   + +  +  A   +++G    + V +   +
Sbjct: 3   IETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVANEKIE 43

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 135

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 23/161 (14%), Positives = 46/161 (28%), Gaps = 32/161 (19%)

Query: 43  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMER 102
           +  +M +NP  +  +     A +K+ +G    + V        +  +             
Sbjct: 3   IETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVANEK----IEGLLTTRDLLSTVESY 58

Query: 103 AAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDT 162
                           K   +     +     + + M               VT+  T  
Sbjct: 59  ---------------CKDSCSQGDLYHISTTPIIDYMTPN-----------PVTVYNTSD 92

Query: 163 VLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQ 202
              A   M+     S  VV + +KP GI+T ++ L  +   
Sbjct: 93  EFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFL-LLYKD 132

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 46.4 bits (109), Expect = 5e-07
 Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 9/123 (7%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENK-PRGILTSKDILMRVISQ-------N 203
               T+  T T+  A   M  L +    +   NK   GI++ +D+L    S        +
Sbjct: 10  RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGD 69

Query: 204 LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263
             A  T + +VM  +         + ++   M   K   LPVV     +V ++       
Sbjct: 70  SLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA-KDVLVGIITDSDFVT 128

Query: 264 AAV 266
            A+
Sbjct: 129 IAI 131

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 43.0 bits (100), Expect = 7e-06
 Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 10/111 (9%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRV-------IARELNLEETPVSKVMTRNPTF 53
           M A  +  + + D+N  L GI++ +D+              +    ETP+ +VM  + T 
Sbjct: 28  MEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFEVMHTDVTS 87

Query: 54  VLSDTLAVEALQKMVQGKFRHLPVVENGEVIALL---DIAKCLYDAIARME 101
           V       E+   M + K   LPVV    ++ ++   D      + +   E
Sbjct: 88  VAPQAGLKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFVTIAINLLELQE 138

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 43.0 bits (100), Expect = 8e-06
 Identities = 26/160 (16%), Positives = 56/160 (35%), Gaps = 30/160 (18%)

Query: 43  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMER 102
           V  +MTR+P  +L      +A   M     RH+P+V+  + +  +   + L  A     +
Sbjct: 4   VEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQ 63

Query: 103 AAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDT 162
            + +G ++A      E                                 + V +++P   
Sbjct: 64  RSAQGDSLAFETPLFEVMH------------------------------TDVTSVAPQAG 93

Query: 163 VLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQ 202
           +  +   M + ++    V  ++   GI+T  D +   I+ 
Sbjct: 94  LKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFVTIAINL 133

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 37.6 bits (86), Expect = 6e-04
 Identities = 18/78 (23%), Positives = 37/78 (47%)

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVG 270
           VE +MT +P        + DA H+M      H+P+VD +  ++ +V    +  A  +++ 
Sbjct: 4   VEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQ 63

Query: 271 NTAGSNNEAASTMMQKFW 288
            +A  ++ A  T + +  
Sbjct: 64  RSAQGDSLAFETPLFEVM 81

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 44.6 bits (104), Expect = 3e-06
 Identities = 16/126 (12%), Positives = 38/126 (30%), Gaps = 7/126 (5%)

Query: 148 IPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVISQN--- 203
           I   S + T S    V    K + E  +S+  +         +  S D++  +   +   
Sbjct: 8   IGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSN 67

Query: 204 ---LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIH 260
                 ++ L                 +      +   +   L VVD +  +  ++ +  
Sbjct: 68  LDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLAD 127

Query: 261 ITHAAV 266
           I +  +
Sbjct: 128 ILNYII 133

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 17/124 (13%), Positives = 40/124 (32%), Gaps = 10/124 (8%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMT------RNPTFV 54
           +A + + A+ + +S   L  +    D+   +   + +  +  V + +             
Sbjct: 30  LAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRPANFDGVHTC 89

Query: 55  LSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIARMERAAEKGKAI 110
            +          +   +   L VV EN ++  +L   DI   +           E+    
Sbjct: 90  RATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYDKTTTPGVPEQTDNF 149

Query: 111 AAAV 114
            +AV
Sbjct: 150 ESAV 153

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 122

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 43.3 bits (101), Expect = 4e-06
 Identities = 16/105 (15%), Positives = 37/105 (35%), Gaps = 6/105 (5%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 211
              VTI+   T   A +   + ++ S  V  +      + S   ++    +   A     
Sbjct: 9   QNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNPDEEQLAM---- 64

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
             ++  +      +  +  A  +M +  +  + VVD  G  V ++
Sbjct: 65  --LVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGIL 107

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 122

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 35.3 bits (80), Expect = 0.003
 Identities = 16/54 (29%), Positives = 26/54 (48%)

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264
           V+ +MT NP   T+      AL +    K    PVV+++G +V ++ V  I   
Sbjct: 3   VKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVN 56

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 141

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 43.1 bits (100), Expect = 7e-06
 Identities = 18/119 (15%), Positives = 42/119 (35%), Gaps = 6/119 (5%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPAD---- 207
           +KV TI     +  A K ML        V  ++     + +    ++ +++ +       
Sbjct: 10  TKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDY 69

Query: 208 --STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264
               +V+ VM  N         +  A   M   +   L ++++D  +  ++    +  A
Sbjct: 70  FYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIA 128

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 141

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 28/167 (16%), Positives = 56/167 (33%), Gaps = 34/167 (20%)

Query: 42  PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARME 101
           PV   M+     +  +    +A++ M++  FR LPV                       +
Sbjct: 3   PVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPV---------------------IDD 41

Query: 102 RAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTD 161
                G                 +     + + +++ M              +VTI    
Sbjct: 42  DNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDVMVTN-----------LVTIDELA 90

Query: 162 TVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPAD 207
           +V  A  +M+  R+ S  ++  +N  RGI+T +D+L   +   L  +
Sbjct: 91  SVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLL-IALHHILVME 136

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

 Score = 40.3 bits (93), Expect = 5e-05
 Identities = 16/114 (14%), Positives = 40/114 (35%), Gaps = 6/114 (5%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVE 212
               +  + TV     +M + + +  +V         + +K+ L+ +   +         
Sbjct: 10  DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDLDSSV------F 63

Query: 213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 266
             ++        +  I  AL +  + +  +LPVVD +  +   V +     A +
Sbjct: 64  NKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALI 117

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

 Score = 34.9 bits (79), Expect = 0.004
 Identities = 12/54 (22%), Positives = 21/54 (38%)

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264
           V+K +T +         + + LH M   +     V DR+G    VV+   +   
Sbjct: 3   VKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDL 56

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 1e-04
 Identities = 11/70 (15%), Positives = 22/70 (31%), Gaps = 1/70 (1%)

Query: 33  ARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKC 92
                     +  ++  +P  V   T     +    +   R   V  NG ++ ++     
Sbjct: 92  LPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGIITKKDV 151

Query: 93  LYDAIARMER 102
           L   IA+M  
Sbjct: 152 L-KHIAQMAN 160

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 0.001
 Identities = 23/163 (14%), Positives = 49/163 (30%), Gaps = 18/163 (11%)

Query: 40  ETPVSKVMTRNP------TFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCL 93
           +T    VM                    +    + +  +   PVV + E   L+      
Sbjct: 2   KTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRR 61

Query: 94  YDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSK 153
              I+      ++   ++ ++    +H           +  LR  +              
Sbjct: 62  DLIISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTL-KLRNILDLS----------- 109

Query: 154 VVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196
             T++    + +      +L L   +VT   +  GI+T KD+L
Sbjct: 110 PFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGIITKKDVL 152

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	369
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.88
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.88
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.87
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.87
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.86
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.86
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.85
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.84
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.84
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.83
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.83
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.83
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.83
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.82
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.82
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.81
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.81
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.81
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.81
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.81
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.8
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.8
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.8
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.8
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.8
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.8
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.8
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.79
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.79
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.78
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.78
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.77
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.77
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.77
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.76
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.76
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.76
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.75
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.75
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.74
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.74
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.73
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.72
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.72
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.71
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.68
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.68
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.67
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.65
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.65
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.62
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.61
d2o1ra1	78	Hypothetical protein HI0107 {Haemophilus influenza	97.75
d2plia1	84	Uncharacterized protein NMB0537 {Neisseria meningi	97.51
d2p4pa1	82	Hypothetical protein HD1797 {Haemophilus ducreyi [	97.49
d2o3ga1	76	Putative protein NMB1485 {Neisseria meningitidis [	97.41
d2p13a1	85	Uncharacterized protein NE2227 {Nitrosomonas europ	97.35
d2r2za1	84	Putative hemolysin EF0700 {Enterococcus faecalis [	97.35
d2plsa1	84	Hypothetical protein CT0541 {Chlorobium tepidum [T	97.33
d3deda1	87	Probable hemolysin CV0231 {Chromobacterium violace	97.31
d2rk5a1	84	Putative hemolysin SMU1693 {Streptococcus mutans [	97.22
d2oaia1	87	Hemolysin TlyC {Xylella fastidiosa [TaxId: 2371]}	97.16
d2nqwa1	87	Hypothetical protein PG0272 {Porphyromonas gingiva	97.09
d2p3ha1	98	Uncharacterized protein Cgl1194/Cg1349 {Corynebact	95.81
d1lkvx_	213	FliG {Thermotoga maritima [TaxId: 2336]}	86.65

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.88  E-value=6e-22  Score=154.10  Aligned_cols=124  Identities=28%  Similarity=0.412  Sum_probs=112.5

Q ss_pred             CCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCC
Q 017536          140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  219 (369)
Q Consensus       140 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~  219 (369)
                      ....|+++|+  ++++++++++++.+|++.|.+++++++||+++++++|++|.+|++ +.+..+... ..++.++|.+++
T Consensus         2 ~~~~V~d~m~--~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~~~~~Givt~~dl~-~~~~~~~~~-~~~v~~~~~~~~   77 (127)
T d2ef7a1           2 EEEIVKEYMK--TQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIV-KAIGKGKSL-ETKAEEFMTASL   77 (127)
T ss_dssp             CCCBGGGTSB--CSCCEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHH-HHHHTTCCT-TCBGGGTSEECC
T ss_pred             CccCHHHhCC--CCCeEECCcCcHHHHHHHHHHcCCceEEeecccchhhhcchhHHH-HHHHhhccc-cchhhhhhhhhc
Confidence            3467899998  689999999999999999999999999999999999999999997 555544443 678999999999


Q ss_pred             ceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHH
Q 017536          220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (369)
Q Consensus       220 ~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~  267 (369)
                      .++++++++.+|++.|.+++++++||+|++|+++|+||..||++++..
T Consensus        78 ~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGiit~~Dll~~i~~  125 (127)
T d2ef7a1          78 ITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDD  125 (127)
T ss_dssp             CCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             cccccccchhHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999997653

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.88  E-value=1.8e-22  Score=157.04  Aligned_cols=123  Identities=26%  Similarity=0.453  Sum_probs=110.6

Q ss_pred             CccccccC-CCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCCce
Q 017536          143 SLSTIIPE-KSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPEC  221 (369)
Q Consensus       143 ~v~~im~~-~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~  221 (369)
                      +++++|.. .++++++++++++.+|+++|.+++++++||+++++++|++|.+|++++....+......++.++|++++.+
T Consensus         3 tV~dim~~k~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~~~~~vGiit~~Di~~~~~~~~~~~~~~~v~~im~~~~~~   82 (127)
T d2rc3a1           3 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTRQVAY   82 (127)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBCSCCC
T ss_pred             cHHHHHccCCCccEEECCcCcHHHHHHHHHHcCCCEEEEEECCeEEEEEEccchhhhhhhhcccccceeEeeeccceeEE
Confidence            46777763 24799999999999999999999999999999999999999999986655555555678999999999999


Q ss_pred             ecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHH
Q 017536          222 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (369)
Q Consensus       222 v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~  266 (369)
                      +.+++++.+|++.|.+++++++||+| +|+++|+||..|++++++
T Consensus        83 v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~GiIt~~Dil~~~i  126 (127)
T d2rc3a1          83 VDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAI  126 (127)
T ss_dssp             BCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             eccCccHHHHHHHHHHCCCcEEEEEE-CCEEEEEEEHHHHHHHHh
Confidence            99999999999999999999999998 699999999999999865

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.87  E-value=4.6e-22  Score=157.77  Aligned_cols=121  Identities=25%  Similarity=0.296  Sum_probs=112.2

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCce
Q 017536          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPEC  221 (369)
Q Consensus       143 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~  221 (369)
                      +++++|.  +++.++++++++.+|++.|.+++++++||++ +|+++|++|.+|+++++...+......+++++|++++++
T Consensus         4 ~v~dim~--~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~~~~~Giit~~di~~~~~~~~~~~~~~~v~~im~~~~~~   81 (142)
T d1pvma4           4 RVEKIMN--SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPIPK   81 (142)
T ss_dssp             BGGGTSB--TTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSSCCE
T ss_pred             EHHHhCC--CCCcEECCcCcHHHHHHHHHHCCCceEeeeccCCcccceEEeechhhhhhhhccccccccccccccccccc
Confidence            5899998  6899999999999999999999999999998 789999999999986666666666677899999999999


Q ss_pred             ecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHH
Q 017536          222 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (369)
Q Consensus       222 v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~  265 (369)
                      +.+++++.+|+++|.+++.+++||+|++|+++|+||..||++++
T Consensus        82 v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l~Giit~~Dil~~l  125 (142)
T d1pvma4          82 VKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYL  125 (142)
T ss_dssp             EETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTS
T ss_pred             ccchhhHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHHHH
Confidence            99999999999999999999999999999999999999999843

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.87  E-value=1.2e-22  Score=157.09  Aligned_cols=119  Identities=17%  Similarity=0.335  Sum_probs=109.1

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCce
Q 017536          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPEC  221 (369)
Q Consensus       143 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~  221 (369)
                      +++++|+  ++++++++++++.+|++.|.+++++++||++ +|+++|++|.+|++.+.+..+.......++++|.+++++
T Consensus         2 t~~diM~--~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Giit~~Di~~~~~~~~~~~~~~~v~~im~~~~~~   79 (123)
T d1y5ha3           2 TARDIMN--AGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDSIYY   79 (123)
T ss_dssp             CHHHHSE--ETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTTCCCC
T ss_pred             CHHHhcC--CCCcEECCcCcHHHHHHHHHHcCCCceEEEeccchhhhhhhhhhHhhhhhhcCCCcccceEEEEeecccee
Confidence            6789998  6799999999999999999999999999998 889999999999986666666665567889999999999


Q ss_pred             ecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHH
Q 017536          222 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (369)
Q Consensus       222 v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~  264 (369)
                      +++++++.+|++.|.+++++++||+| +|+++|+||..||+++
T Consensus        80 v~~~~~~~~~~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~  121 (123)
T d1y5ha3          80 VDANASIQEMLNVMEEHQVRRVPVIS-EHRLVGIVTEADIARH  121 (123)
T ss_dssp             EETTCCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHT
T ss_pred             eeecchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHhh
Confidence            99999999999999999999999998 5899999999999984

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.86  E-value=1.3e-21  Score=150.49  Aligned_cols=119  Identities=23%  Similarity=0.247  Sum_probs=108.4

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCCcee
Q 017536          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECA  222 (369)
Q Consensus       143 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v  222 (369)
                      +++++|+  ++++++++++|+.+|++.|.+++++++||.++|+++|++|.+|++ +.+..+......++.++|+++++++
T Consensus         1 kV~diM~--~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~~~~~Gvit~~Di~-~~l~~~~~~~~~~v~~~m~~~~~~v   77 (120)
T d1pbja3           1 RVEDVMV--TDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVL-EAIAEGDDLAEVKVWEVMERDLVTI   77 (120)
T ss_dssp             CHHHHCB--CSCCEEETTCBHHHHHHHHHHHCCCEEEEEETTEEEEEEEHHHHH-HHHHHTCCTTTSBHHHHCBCGGGEE
T ss_pred             ChHHhCC--CCCeEECCcCcHHHHHHHHHHcCceEEEEEeCCcEEEEEEeeecc-ccccccccccceeEeeecccccccc
Confidence            3678998  689999999999999999999999999999999999999999998 5555555555779999999999999


Q ss_pred             cCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHH
Q 017536          223 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (369)
Q Consensus       223 ~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~  265 (369)
                      ++++++.+|++.|.+++.+++||+| +|+++|+||..|+++|.
T Consensus        78 ~~~~~l~~a~~~m~~~~~~~l~V~~-~~~l~Givt~~Dil~A~  119 (120)
T d1pbja3          78 SPRATIKEAAEKMVKNVVWRLLVEE-DDEIIGVISATDILRAK  119 (120)
T ss_dssp             CTTSCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHhcC
Confidence            9999999999999999999999986 69999999999999874

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.86  E-value=3.5e-21  Score=150.71  Aligned_cols=126  Identities=24%  Similarity=0.408  Sum_probs=112.2

Q ss_pred             CCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCC
Q 017536          141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  219 (369)
Q Consensus       141 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~  219 (369)
                      +.+++++|+  ++++++++++++.+|++.|.+++++++||+| +|+++|++|.+|+++.+... ......+++++|.+++
T Consensus         4 ~~pV~~im~--~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~-~~~~~~~v~~im~~~~   80 (132)
T d2yzia1           4 KAPIKVYMT--KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVP-GLPYDIPVERIMTRNL   80 (132)
T ss_dssp             TSBGGGTCB--CCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTT-CCCTTSBGGGTCBCSC
T ss_pred             CCcHHHHcC--CCCeEECCcCcHHHHHHHHHHcCCcEEEEecccceeeeeeeHHHHHHHHhhc-cCccceeEeecccccc
Confidence            457999998  6899999999999999999999999999999 88999999999998444443 3334689999999999


Q ss_pred             ceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHhc
Q 017536          220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVG  270 (369)
Q Consensus       220 ~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~~  270 (369)
                      .++++++++.++++.|.+++++++||++ +|+++|+||..|++++...+++
T Consensus        81 ~~v~~~~~~~~~~~~m~~~~~~~l~V~~-~~~~vGivt~~Dil~a~~~~le  130 (132)
T d2yzia1          81 ITANVNTPLGEVLRKMAEHRIKHILIEE-EGKIVGIFTLSDLLEASRRRLE  130 (132)
T ss_dssp             CEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHCCSC
T ss_pred             cccCcchHHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHHHc
Confidence            9999999999999999999999999875 7999999999999998776553

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.85  E-value=2.7e-21  Score=151.43  Aligned_cols=124  Identities=14%  Similarity=0.145  Sum_probs=108.8

Q ss_pred             CCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCC-----Ccccccccccc
Q 017536          142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL-----PADSTLVEKVM  215 (369)
Q Consensus       142 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~-----~~~~~~v~~~m  215 (369)
                      .+++++|.|..+++++.+++++.+|++.|.+++++++||+| +|+++|++|.+|++ +.+....     .....++.++|
T Consensus         2 ~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~~~vGiit~~di~-~~~~~~~~~~~~~~~~~~v~~~m   80 (132)
T d1yava3           2 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIM-NSIFGLERIEFEKLDQITVEEVM   80 (132)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHH-HHHBCSSSBCGGGTTTSBHHHHS
T ss_pred             CCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecccccccEEEcchhH-HHhhccccccccccccccccccc
Confidence            46899999888999999999999999999999999999998 89999999999998 4443321     11246789999


Q ss_pred             ccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHH
Q 017536          216 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (369)
Q Consensus       216 ~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~  268 (369)
                      .++++++++++++.+++..|.+++  .+||+|++|+++|+||.+|+++++...
T Consensus        81 ~~~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd~~~~~~Givt~~dil~~l~~~  131 (132)
T d1yava3          81 LTDIPRLHINDPIMKGFGMVINNG--FVCVENDEQVFEGIFTRRVVLKELNKH  131 (132)
T ss_dssp             BCSCCEEETTSBHHHHHHHTTTCS--EEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             cccccccccchhHHHHHHHHHhCC--EEEEEccCCEEEEEEEHHHHHHHHHhh
Confidence            999999999999999999998765  599999999999999999999987643

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.84  E-value=1.9e-20  Score=144.17  Aligned_cols=118  Identities=17%  Similarity=0.221  Sum_probs=108.6

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCce
Q 017536          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPEC  221 (369)
Q Consensus       143 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~  221 (369)
                      +++++|.  ++++++++++|+.+|++.|.+++++++||++ +++++|++|.+|++ +.     . ...++.++|..++++
T Consensus         2 ~v~~~m~--~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii~~~dl~-~~-----~-~~~~v~~~~~~~~~~   72 (121)
T d1vr9a3           2 KVKKWVT--QDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLL-DL-----D-LDSSVFNKVSLPDFF   72 (121)
T ss_dssp             BGGGGCB--SCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGT-TS-----C-TTSBSGGGCBCTTCC
T ss_pred             Cchhhhc--CCCeEECCCCCHHHHHHhhhhcCcEEEEEEeCCceeEEEeehhhhh-hh-----h-ccccccccccCccEE
Confidence            4788998  7899999999999999999999999999998 89999999999996 22     1 256899999999999


Q ss_pred             ecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHh
Q 017536          222 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  269 (369)
Q Consensus       222 v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~  269 (369)
                      +++++++.+++++|.+++...+||+|++|+++|+||..|+++++..++
T Consensus        73 v~~~~~l~~~~~~~~~~~~~~lpVvde~g~~~Gvit~~dil~~l~~~l  120 (121)
T d1vr9a3          73 VHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEAL  120 (121)
T ss_dssp             EETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHSC
T ss_pred             ECCCCCHHHHHHHHHhcCceeeeeECCCCeEEEEEEHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999887654

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.84  E-value=9.2e-21  Score=149.70  Aligned_cols=124  Identities=19%  Similarity=0.186  Sum_probs=108.6

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcC-------CCccccccccc
Q 017536          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN-------LPADSTLVEKV  214 (369)
Q Consensus       143 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~-------~~~~~~~v~~~  214 (369)
                      +++++|+  +++.++.+++++.+|++.|.+++++++||+| +|+++|++|.+|+++......       ......++.++
T Consensus         3 ~v~diM~--~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~v~~i   80 (139)
T d2o16a3           3 KVEDMMT--RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFEV   80 (139)
T ss_dssp             BGGGTSE--ESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------CCCBHHHH
T ss_pred             EHHHhCc--CCCeEECCcCCHHHHHHHHHHcCCCeeeeecccccccccccHHHHHHHHHhhhhhhhcccccccccchhHh
Confidence            5899998  5799999999999999999999999999999 899999999999983332221       11235689999


Q ss_pred             cccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHh
Q 017536          215 MTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  269 (369)
Q Consensus       215 m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~  269 (369)
                      |.++++++++++++.+|+++|.+++++++||+| +|+++|+||..||++++...+
T Consensus        81 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~~~~~~  134 (139)
T d2o16a3          81 MHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA-KDVLVGIITDSDFVTIAINLL  134 (139)
T ss_dssp             SCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE-TTEEEEEECHHHHHHHHHHHH
T ss_pred             hccccccccccchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHHHHHHHH
Confidence            999999999999999999999999999999998 589999999999999887654

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.83  E-value=1.6e-20  Score=145.78  Aligned_cols=115  Identities=22%  Similarity=0.319  Sum_probs=104.1

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcC-----CceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccc
Q 017536          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELR-----LSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT  216 (369)
Q Consensus       143 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~-----~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~  216 (369)
                      +++.+|+  ++++++++++|+.+|++.|++++     ++.+||+| +++++|+++.++++ .      .....++.++|.
T Consensus         2 taG~iM~--~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~~l~-~------~~~~~~v~~im~   72 (127)
T d2ouxa2           2 TAGAIMT--TEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLI-V------NDDDTLIADILN   72 (127)
T ss_dssp             BHHHHCB--SCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHT-T------SCTTSBHHHHSB
T ss_pred             ChhHhCC--CCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecCCeEEEEEEeeccc-c------ccccEEhhhhcc
Confidence            4678898  78999999999999999998874     68999999 89999999999986 1      123678999999


Q ss_pred             cCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHH
Q 017536          217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (369)
Q Consensus       217 ~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~  266 (369)
                      ++++++++++++.+|++.|.+++++++||||++|+++|+||..||++++-
T Consensus        73 ~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~Dil~~i~  122 (127)
T d2ouxa2          73 ERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVID  122 (127)
T ss_dssp             SCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             CCCccCCCCCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998654

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.83  E-value=2.9e-20  Score=146.81  Aligned_cols=128  Identities=20%  Similarity=0.305  Sum_probs=107.0

Q ss_pred             cccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHH
Q 017536           41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK  119 (369)
Q Consensus        41 ~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (369)
                      ++|+|+|+++++++.+++++.+|++.|.+++++++||+| +|+++|+++..|++.........                 
T Consensus         2 i~v~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~~~~~Giit~~dl~~~~~~~~~~-----------------   64 (139)
T d2o16a3           2 IKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQR-----------------   64 (139)
T ss_dssp             CBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC------------------
T ss_pred             EEHHHhCcCCCeEECCcCCHHHHHHHHHHcCCCeeeeecccccccccccHHHHHHHHHhhhhh-----------------
Confidence            479999999999999999999999999999999999998 79999999999998764322110                 


Q ss_pred             hcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHH
Q 017536          120 HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRV  199 (369)
Q Consensus       120 ~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~  199 (369)
                                  ...........+++++|.  ++++++++++++.+|++.|.+++.+++||+|+|+++|++|.+|+++.+
T Consensus        65 ------------~~~~~~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~lvGiit~~Dil~~~  130 (139)
T d2o16a3          65 ------------SAQGDSLAFETPLFEVMH--TDVTSVAPQAGLKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFVTIA  130 (139)
T ss_dssp             --------------------CCCBHHHHSC--SCEEEBCTTSBHHHHHHHHHHTTCSCEEEEETTEEEEEECHHHHHHHH
T ss_pred             ------------hhcccccccccchhHhhc--cccccccccchHHHHHHHHHHcCceEEEEEECCEEEEEEEHHHHHHHH
Confidence                        000112244567899998  689999999999999999999999999999999999999999998443

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.83  E-value=2e-21  Score=149.89  Aligned_cols=117  Identities=23%  Similarity=0.251  Sum_probs=89.0

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCce
Q 017536          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPEC  221 (369)
Q Consensus       143 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~  221 (369)
                      +++++|+  ++++++++++++.+|++.|.+++++++||++ +|+++|++|.+|++ ...      ...++.++|.+++++
T Consensus         2 ~v~diM~--~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~G~it~~dl~-~~~------~~~~~~~~~~~~~~~   72 (122)
T d2yzqa2           2 RVKTIMT--QNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRIL-VNP------DEEQLAMLVKRDVPV   72 (122)
T ss_dssp             BHHHHSE--ESCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC-----------------CCCBSCCCE
T ss_pred             CcccccC--CCCEEECCcCcHHHHHHHHHHcCCcEEEEEeccccchhhhhcchhh-hhh------cccchhhccccceee
Confidence            4778898  5799999999999999999999999999998 89999999999997 321      256789999999999


Q ss_pred             ecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHH
Q 017536          222 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (369)
Q Consensus       222 v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~  268 (369)
                      +++++++.+|++.|.+++++++||+|++|+++|+||..||+++.+.+
T Consensus        73 v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~liGiit~~dil~~~~~~  119 (122)
T d2yzqa2          73 VKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAK  119 (122)
T ss_dssp             EETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTT
T ss_pred             cchhhHHHHHHHHHHHcCcEEEEEEeCCCEEEEEEEHHHHHHHHHhH
Confidence            99999999999999999999999999999999999999999876543

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.83  E-value=8.5e-21  Score=150.40  Aligned_cols=125  Identities=18%  Similarity=0.136  Sum_probs=110.1

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhc-----CCCccccccccccc
Q 017536          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQ-----NLPADSTLVEKVMT  216 (369)
Q Consensus       143 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~-----~~~~~~~~v~~~m~  216 (369)
                      +|+++|+  ++++++++++|+.+|++.|.+++++++||++ ++++.|+++..|+++.....     .......+++++|+
T Consensus         3 ~V~~iMt--~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~~~~~g~i~~~di~~~~~~~~~~~~~~~~~~~~v~~im~   80 (141)
T d3ddja1           3 PVKVFMS--TKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDVMV   80 (141)
T ss_dssp             BHHHHSB--CSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHHHSB
T ss_pred             eeHHhCc--CCCeEEcCcCcHHHHHHHHHHcCCCeeecccccCccccccccccchhhhhccccccccccccCCCHHHHhC
Confidence            5889999  5799999999999999999999999999999 88999999999997333211     11123568999999


Q ss_pred             cCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHh
Q 017536          217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  269 (369)
Q Consensus       217 ~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~  269 (369)
                      ++++++.+++++.++++.|.+++.+++||+|++|+++|+||..||++++....
T Consensus        81 ~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~~Dil~~l~~~~  133 (141)
T d3ddja1          81 TNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHIL  133 (141)
T ss_dssp             CCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHH
T ss_pred             cccccccccchhhHHHHHHHHcCCCEEEEEccCCEEEEEEEHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999887654

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.82  E-value=2.4e-20  Score=148.02  Aligned_cols=117  Identities=22%  Similarity=0.307  Sum_probs=105.0

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcC-----CceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccc
Q 017536          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELR-----LSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT  216 (369)
Q Consensus       143 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~-----~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~  216 (369)
                      +++.+|+  ++++++++++|+.+|++.|++++     ++.+||++ +|+++|+++.+|++ .     . ....++.++|.
T Consensus         2 taG~iM~--~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~dl~-~-----~-~~~~~v~~im~   72 (144)
T d2yvxa2           2 EAGGLMT--PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLI-V-----A-DPRTRVAEIMN   72 (144)
T ss_dssp             SSGGGCB--SCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTTCBBCCBCBHHHHT-T-----S-CTTCBSTTTSB
T ss_pred             CcccccC--CCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCCCCEecccchhhhh-h-----c-ccccchHHhcc
Confidence            5789999  68999999999999999998764     67899999 89999999999995 2     1 22578999999


Q ss_pred             cCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHH
Q 017536          217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (369)
Q Consensus       217 ~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~  268 (369)
                      ++++++++++++.+|++.|.+++++++||||++|+++|+||..||++++..+
T Consensus        73 ~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~Dil~~l~~e  124 (144)
T d2yvxa2          73 PKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAE  124 (144)
T ss_dssp             SSCCCEESSCCHHHHHHHHHHSCCSEEEEECSSCBEEEEEEHHHHHHHHHHH
T ss_pred             cCCccCCCCChHHHHHHHHHHcCCCEEEEEeECCEEEEEEEHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999865443

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.82  E-value=1.3e-20  Score=151.91  Aligned_cols=122  Identities=18%  Similarity=0.184  Sum_probs=106.0

Q ss_pred             CCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhc------------------
Q 017536          142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQ------------------  202 (369)
Q Consensus       142 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~------------------  202 (369)
                      .+++++|.  ++++++.+++++.+|++.|.+++++++||++ +|+++|++|..|+++.....                  
T Consensus         4 ~~v~~~m~--r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~   81 (156)
T d2yzqa1           4 VEIEPYYQ--RYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWIL   81 (156)
T ss_dssp             CBSTTTSB--SCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC-----------------
T ss_pred             CCHHHHhc--CCCeEECCcCcHHHHHHHHHHcCCCEEEEEeCCCCceeEEeeeechhhhcccccccccccccchhhhhhh
Confidence            46889998  7899999999999999999999999999998 89999999999986211110                  


Q ss_pred             -----------CCCccccccccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHH
Q 017536          203 -----------NLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (369)
Q Consensus       203 -----------~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~  265 (369)
                                 .......++.++|++++.++++++++.++++.|.+++++++||+|++|+++|+||++||++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~Dil~~l  155 (156)
T d2yzqa1          82 ESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVL  155 (156)
T ss_dssp             ---------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGG
T ss_pred             hhhhhhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHHHHHHHh
Confidence                       011124588999999999999999999999999999999999999999999999999999864

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.81  E-value=7.1e-20  Score=140.66  Aligned_cols=118  Identities=19%  Similarity=0.245  Sum_probs=104.3

Q ss_pred             ccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhc
Q 017536           42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHW  121 (369)
Q Consensus        42 ~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (369)
                      +|+|+|+++++++++++|+.+|++.|.+++++.+||.++|+++|+++..|+++.+...                      
T Consensus         1 kV~diM~~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~~~~~Gvit~~Di~~~l~~~----------------------   58 (120)
T d1pbja3           1 RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAIAEG----------------------   58 (120)
T ss_dssp             CHHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEETTEEEEEEEHHHHHHHHHHT----------------------
T ss_pred             ChHHhCCCCCeEECCcCcHHHHHHHHHHcCceEEEEEeCCcEEEEEEeeecccccccc----------------------
Confidence            5789999999999999999999999999999999999999999999999998753211                      


Q ss_pred             CCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHH
Q 017536          122 GTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMR  198 (369)
Q Consensus       122 g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~  198 (369)
                                     ......++.++|.  ++++++++++++.+|++.|.+++.+++||+++|+++|++|.+|++++
T Consensus        59 ---------------~~~~~~~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~~~~l~Givt~~Dil~A  118 (120)
T d1pbja3          59 ---------------DDLAEVKVWEVME--RDLVTISPRATIKEAAEKMVKNVVWRLLVEEDDEIIGVISATDILRA  118 (120)
T ss_dssp             ---------------CCTTTSBHHHHCB--CGGGEECTTSCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred             ---------------ccccceeEeeecc--cccccccchhHHHHHHHHHHHcCCeEEEEEECCEEEEEEEHHHHHhc
Confidence                           0123456888897  68999999999999999999999999999999999999999999843

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.81  E-value=2.3e-20  Score=150.46  Aligned_cols=149  Identities=19%  Similarity=0.237  Sum_probs=106.1

Q ss_pred             cccccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhH
Q 017536           39 EETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV  117 (369)
Q Consensus        39 ~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~  117 (369)
                      .+.+++++|.++++++.+++++.+|+++|.+++++++||+| +|+++|+++..|++...........       ......
T Consensus         2 ~~~~v~~~m~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~~~lvG~it~~Dl~~~~~~~~~~~~-------~~~~~~   74 (156)
T d2yzqa1           2 KGVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKS-------TELAAS   74 (156)
T ss_dssp             GGCBSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC-----------------
T ss_pred             CCCCHHHHhcCCCeEECCcCcHHHHHHHHHHcCCCEEEEEeCCCCceeEEeeeechhhhcccccccc-------cccccc
Confidence            36789999999999999999999999999999999999998 7999999999998754221000000       000000


Q ss_pred             HHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          118 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       118 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                      .........................++.++|+  +++.++.+++++.++++.|.+++++++||+| +|+++|++|.+|++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~--~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~Dil  152 (156)
T d2yzqa1          75 SEEEWILESHPTLLFEKFELQLPNKPVAEIMT--RDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLL  152 (156)
T ss_dssp             ----------------------CCCBGGGTCB--SSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHG
T ss_pred             hhhhhhhhhhhhhhHHHhhhcccCCEeehhcc--cCceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHHHHH
Confidence            00000000111122233344566788999998  5799999999999999999999999999999 89999999999998

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.81  E-value=1.8e-19  Score=139.63  Aligned_cols=110  Identities=22%  Similarity=0.347  Sum_probs=95.2

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCCceEEEEe---CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCH
Q 017536          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPI  228 (369)
Q Consensus       152 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d---~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l  228 (369)
                      .+++++++++++.+|+++|.+++++++||+|   +++++|++|.+|++ +.....    ......+|..+++++++++++
T Consensus         5 ~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~-~~~~~~----~~~~~~~~~~~~~~~~~~~~l   79 (126)
T d1zfja4           5 IDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMR-FISDYN----APISEHMTSEHLVTAAVGTDL   79 (126)
T ss_dssp             SSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHH-HCSCSS----SBTTTSCCCSCCCCEETTCCH
T ss_pred             eCceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHH-HhhccC----CceeeeeeccceeecCCCCCH
Confidence            4678999999999999999999999999998   57899999999996 432211    223445566788999999999


Q ss_pred             HHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHH
Q 017536          229 VDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (369)
Q Consensus       229 ~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~  266 (369)
                      .+|+++|.+++++++||||++|+++|+||+.||++++.
T Consensus        80 ~~a~~~m~~~~~~~lpVVd~~g~lvGiiT~~Dil~~~~  117 (126)
T d1zfja4          80 ETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIE  117 (126)
T ss_dssp             HHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             HHHHHHHHhcCCcEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence            99999999999999999999999999999999999654

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.81  E-value=9.5e-21  Score=146.34  Aligned_cols=118  Identities=18%  Similarity=0.207  Sum_probs=101.9

Q ss_pred             cccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHH
Q 017536           41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK  119 (369)
Q Consensus        41 ~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (369)
                      ++++|+|+++++++.+++++.+|++.|.+++++++||+| +|+++|+++.+|++...+.+                    
T Consensus         1 tt~~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Giit~~Di~~~~~~~--------------------   60 (123)
T d1y5ha3           1 TTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAA--------------------   60 (123)
T ss_dssp             CCHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGG--------------------
T ss_pred             CCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCCceEEEeccchhhhhhhhhhHhhhhhhc--------------------
Confidence            478999999999999999999999999999999999998 78999999999987642210                    


Q ss_pred             hcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHH
Q 017536          120 HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (369)
Q Consensus       120 ~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll  196 (369)
                        +.              ......++++|.  ++++++++++++.+|++.|.+++++++||+++++++|++|..|++
T Consensus        61 --~~--------------~~~~~~v~~im~--~~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd~~~lvGiit~~Dil  119 (123)
T d1y5ha3          61 --GL--------------DPNTATAGELAR--DSIYYVDANASIQEMLNVMEEHQVRRVPVISEHRLVGIVTEADIA  119 (123)
T ss_dssp             --TC--------------CTTTSBHHHHHT--TCCCCEETTCCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHH
T ss_pred             --CC--------------CcccceEEEEee--ccceeeeecchHHHHHHHHHHcCceEEEEEECCEEEEEEEHHHHH
Confidence              00              012234677887  678999999999999999999999999999999999999999998

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.81  E-value=1.4e-19  Score=145.24  Aligned_cols=128  Identities=13%  Similarity=0.127  Sum_probs=106.0

Q ss_pred             CccccccC-CCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccc----
Q 017536          143 SLSTIIPE-KSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT----  216 (369)
Q Consensus       143 ~v~~im~~-~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~----  216 (369)
                      ++++++.. .++++++.+++++.+|++.|.+++++++||++ +++++|++|.+|+++.+..........++.++|.    
T Consensus         2 pl~~~~ig~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~vG~it~~Dl~~~~~~~~~~~~~~~v~~~~~~~~~   81 (153)
T d2ooxe2           2 PLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRPA   81 (153)
T ss_dssp             BGGGTCCSBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGGGBEEEEEEHHHHHHHHGGGCGGGGGSBHHHHHHTSCC
T ss_pred             CHHHcCCCCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeecccceEEEEEEeeeeeehhccccccccccchhhheeeeec
Confidence            35555542 35899999999999999999999999999999 8899999999999744433333333456666653    


Q ss_pred             --cCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHhc
Q 017536          217 --PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVG  270 (369)
Q Consensus       217 --~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~~  270 (369)
                        .+++++++++++.++++.|.+++.+++||||++|+++|+||+.|++++++....
T Consensus        82 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGivT~~Dil~~~~~~~~  137 (153)
T d2ooxe2          82 NFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYDKT  137 (153)
T ss_dssp             CSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECTTCBEEEEEEHHHHHHHHHSCTT
T ss_pred             ccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcCCCEEEEEEEHHHHHHHHHcCcc
Confidence              466789999999999999999999999999999999999999999998876443

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.80  E-value=1.9e-19  Score=140.72  Aligned_cols=123  Identities=21%  Similarity=0.284  Sum_probs=106.8

Q ss_pred             ccccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHH
Q 017536           40 ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE  118 (369)
Q Consensus        40 ~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~  118 (369)
                      +.+|+++|+++++++++++|+.+|++.|.+++++++||+| +|+++|+++..|+++.....                   
T Consensus         4 ~~pV~~im~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~-------------------   64 (132)
T d2yzia1           4 KAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVP-------------------   64 (132)
T ss_dssp             TSBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTT-------------------
T ss_pred             CCcHHHHcCCCCeEECCcCcHHHHHHHHHHcCCcEEEEecccceeeeeeeHHHHHHHHhhc-------------------
Confidence            4589999999999999999999999999999999999998 68999999999998652210                   


Q ss_pred             HhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHH
Q 017536          119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMR  198 (369)
Q Consensus       119 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~  198 (369)
                                        ......+++++|.  +++.++++++++.++++.|.+++++++||.++|+++|++|.+|++ +
T Consensus        65 ------------------~~~~~~~v~~im~--~~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~~~~~vGivt~~Dil-~  123 (132)
T d2yzia1          65 ------------------GLPYDIPVERIMT--RNLITANVNTPLGEVLRKMAEHRIKHILIEEEGKIVGIFTLSDLL-E  123 (132)
T ss_dssp             ------------------CCCTTSBGGGTCB--CSCCEEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHH-H
T ss_pred             ------------------cCccceeEeeccc--ccccccCcchHHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHH-H
Confidence                              0112456899998  679999999999999999999999999998899999999999998 4


Q ss_pred             HHhc
Q 017536          199 VISQ  202 (369)
Q Consensus       199 ~~~~  202 (369)
                      .+.+
T Consensus       124 a~~~  127 (132)
T d2yzia1         124 ASRR  127 (132)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            4433

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=2.2e-19  Score=141.88  Aligned_cols=126  Identities=14%  Similarity=0.113  Sum_probs=98.0

Q ss_pred             CCCcccc-ccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCcccccc------c
Q 017536          141 RPSLSTI-IPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLV------E  212 (369)
Q Consensus       141 ~~~v~~i-m~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v------~  212 (369)
                      +++++++ +.+..++.++.+++++.+|++.|.+++++++||++ +|+++|++|.+|+++.+...........+      .
T Consensus         5 ~~~i~~l~~~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vG~it~~Di~~~~~~~~~~~~~~~~~~~~~~~   84 (140)
T d2nyca1           5 KIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRR   84 (140)
T ss_dssp             GSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC----CCSBHHHHHHHC
T ss_pred             cCcHHHhCCccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCeEcceehhhHHHHHHhhccccccccchhhhhhhh
Confidence            3456655 22237899999999999999999999999999999 88999999999998433333222212222      2


Q ss_pred             cccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHH
Q 017536          213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (369)
Q Consensus       213 ~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~  266 (369)
                      ..+..+++++++++++.++++.|.+++++++||||++|+++|+||..||+++++
T Consensus        85 ~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~~~l~GiIt~~Dii~~l~  138 (140)
T d2nyca1          85 SDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL  138 (140)
T ss_dssp             C------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             hhcccccEEECCCCcHHHHHHHHHhcCeeEEEEEeCCCeEEEEEEHHHHHHHHh
Confidence            344567889999999999999999999999999999999999999999999875

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.80  E-value=2.3e-19  Score=140.07  Aligned_cols=118  Identities=21%  Similarity=0.339  Sum_probs=102.8

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe---CCEEEEEeehHHHHHHHHhcCCCccccccccccccCC
Q 017536          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  219 (369)
Q Consensus       143 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d---~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~  219 (369)
                      +++++|+  ++++++++++++.+|++.|.+++++++||++   +++++|+++..|+. +.+.....  .......+..++
T Consensus         2 ~V~dim~--~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~-~~~~~~~~--~~~~~~~~~~~~   76 (131)
T d2riha1           2 RTSELLK--RPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDIL-RAVAQRLD--LDGPAMPIANSP   76 (131)
T ss_dssp             BGGGGCC--SCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHH-HHHHTTCC--TTSBSGGGCBCC
T ss_pred             CHHHhcc--CCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccc-cccccccc--cccccccccccc
Confidence            5889998  6899999999999999999999999999994   57899999999997 55544433  223445556788


Q ss_pred             ceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHH
Q 017536          220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (369)
Q Consensus       220 ~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~  265 (369)
                      +++.+++++.+|+++|.+++++++||+|++|+++|+||..||+++.
T Consensus        77 ~~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g~l~Giit~~Dll~~~  122 (131)
T d2riha1          77 ITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFER  122 (131)
T ss_dssp             CEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCH
T ss_pred             eeEeeecchHHHHHHHHHCCeEEEEEEcCCCeEEEEEEHHHHHHHH
Confidence            9999999999999999999999999999999999999999999753

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.80  E-value=2.4e-19  Score=139.07  Aligned_cols=121  Identities=17%  Similarity=0.221  Sum_probs=106.2

Q ss_pred             cccccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHH
Q 017536           39 EETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE  118 (369)
Q Consensus        39 ~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~  118 (369)
                      .+..|+++|+++++++.+++++.+|+++|.+++++.+||+|+|+++|+++..|+++....                    
T Consensus         2 ~~~~V~d~m~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~~~~~Givt~~dl~~~~~~--------------------   61 (127)
T d2ef7a1           2 EEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGK--------------------   61 (127)
T ss_dssp             CCCBGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHT--------------------
T ss_pred             CccCHHHhCCCCCeEECCcCcHHHHHHHHHHcCCceEEeecccchhhhcchhHHHHHHHh--------------------
Confidence            456899999999999999999999999999999999999999999999999999765221                    


Q ss_pred             HhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHH
Q 017536          119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM  197 (369)
Q Consensus       119 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~  197 (369)
                                        ......++.++|.  +++.++++++++.++++.|.+++.+++||++ +|+++|++|..|++ 
T Consensus        62 ------------------~~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGiit~~Dll-  120 (127)
T d2ef7a1          62 ------------------GKSLETKAEEFMT--ASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDIT-  120 (127)
T ss_dssp             ------------------TCCTTCBGGGTSE--ECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHH-
T ss_pred             ------------------hccccchhhhhhh--hhccccccccchhHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHH-
Confidence                              0122346788887  5789999999999999999999999999998 89999999999998 


Q ss_pred             HHH
Q 017536          198 RVI  200 (369)
Q Consensus       198 ~~~  200 (369)
                      +.+
T Consensus       121 ~~i  123 (127)
T d2ef7a1         121 RAI  123 (127)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.80  E-value=9.2e-20  Score=141.49  Aligned_cols=121  Identities=17%  Similarity=0.217  Sum_probs=103.5

Q ss_pred             ccccccc---cCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHH
Q 017536           42 PVSKVMT---RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE  118 (369)
Q Consensus        42 ~v~dim~---~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~  118 (369)
                      +|+++|.   ++++++++++|+.+|+++|.+++++++||+++|+++|++|..|+++.....                   
T Consensus         3 tV~dim~~k~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~~~~~vGiit~~Di~~~~~~~-------------------   63 (127)
T d2rc3a1           3 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLL-------------------   63 (127)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHGGGS-------------------
T ss_pred             cHHHHHccCCCccEEECCcCcHHHHHHHHHHcCCCEEEEEECCeEEEEEEccchhhhhhhh-------------------
Confidence            5788886   478999999999999999999999999999999999999999997652110                   


Q ss_pred             HhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHH
Q 017536          119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMR  198 (369)
Q Consensus       119 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~  198 (369)
                         +              ......+++++|.  +++.++.+++++.+|++.|.+++++++||+++|+++|+||.+|+++.
T Consensus        64 ---~--------------~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~GiIt~~Dil~~  124 (127)
T d2rc3a1          64 ---D--------------KPVKDTQVKEIMT--RQVAYVDLNNTNEDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKD  124 (127)
T ss_dssp             ---S--------------SCGGGSBGGGTSB--CSCCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred             ---c--------------ccccceeEeeecc--ceeEEeccCccHHHHHHHHHHCCCcEEEEEECCEEEEEEEHHHHHHH
Confidence               0              0022346889998  68999999999999999999999999999999999999999999855


Q ss_pred             HH
Q 017536          199 VI  200 (369)
Q Consensus       199 ~~  200 (369)
                      .+
T Consensus       125 ~i  126 (127)
T d2rc3a1         125 AI  126 (127)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.80  E-value=4.1e-20  Score=142.42  Aligned_cols=116  Identities=29%  Similarity=0.425  Sum_probs=86.9

Q ss_pred             cccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHH
Q 017536           41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK  119 (369)
Q Consensus        41 ~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (369)
                      ++|+++|+++++++++++++.+|++.|.+++++++||+| +|+++|+++.+|++..                        
T Consensus         1 m~v~diM~~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~G~it~~dl~~~------------------------   56 (122)
T d2yzqa2           1 MRVKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVN------------------------   56 (122)
T ss_dssp             CBHHHHSEESCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC---------------------------
T ss_pred             CCcccccCCCCEEECCcCcHHHHHHHHHHcCCcEEEEEeccccchhhhhcchhhhh------------------------
Confidence            478999999999999999999999999999999999998 7999999999998753                        


Q ss_pred             hcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHH
Q 017536          120 HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMR  198 (369)
Q Consensus       120 ~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~  198 (369)
                                         ....++.++|.  ++++++++++++.++++.|.+++.+++||+| +|+++|++|.+|++++
T Consensus        57 -------------------~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~liGiit~~dil~~  115 (122)
T d2yzqa2          57 -------------------PDEEQLAMLVK--RDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRR  115 (122)
T ss_dssp             --------------------------CCCB--SCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             -------------------hcccchhhccc--cceeecchhhHHHHHHHHHHHcCcEEEEEEeCCCEEEEEEEHHHHHHH
Confidence                               11234778887  6789999999999999999999999999999 8999999999999855


Q ss_pred             HHh
Q 017536          199 VIS  201 (369)
Q Consensus       199 ~~~  201 (369)
                      ++.
T Consensus       116 ~~~  118 (122)
T d2yzqa2         116 YFA  118 (122)
T ss_dssp             TTT
T ss_pred             HHh
Confidence            443

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=2e-19  Score=145.37  Aligned_cols=131  Identities=18%  Similarity=0.159  Sum_probs=109.9

Q ss_pred             hCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe--CCEEEEEeehHHHHHHHHhcCC----Cc------
Q 017536          139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNL----PA------  206 (369)
Q Consensus       139 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d--~~~~~Giit~~dll~~~~~~~~----~~------  206 (369)
                      +...++.|+|.+..++++++.++++.+|++.|.+++++++||++  +++++|++|.+|++........    ..      
T Consensus        10 l~~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~~~~~~~~~   89 (159)
T d2v8qe2          10 MKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEH   89 (159)
T ss_dssp             HHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGGC
T ss_pred             hcCCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccchhhhhhhh
Confidence            44567999998778899999999999999999999999999997  6899999999999843322110    00      


Q ss_pred             ----cccccccccccCCceecCCCCHHHHHHHHHhCCCceeeEEc-CCCcEEEEEeHHHHHHHHHHHh
Q 017536          207 ----DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVD-RDGDVVDVVDVIHITHAAVATV  269 (369)
Q Consensus       207 ----~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd-~~g~~~Givt~~di~~~~~~~~  269 (369)
                          ......++|.++++++++++++.+|+++|.+++.+++||+| ++|+++|+||.+||++++...+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l~~~~  157 (159)
T d2v8qe2          90 KIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFI  157 (159)
T ss_dssp             BHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHS
T ss_pred             hcccccceeeeeeccceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHHHHHc
Confidence                01234578888999999999999999999999999999998 5689999999999999887655

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.79  E-value=1.2e-18  Score=138.52  Aligned_cols=122  Identities=21%  Similarity=0.314  Sum_probs=103.3

Q ss_pred             ccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcC--------------CCccc
Q 017536          144 LSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN--------------LPADS  208 (369)
Q Consensus       144 v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~--------------~~~~~  208 (369)
                      +.++|.  .+++++++++++.+|++.|.+++++++||+| +++++|++|..|+++......              .....
T Consensus         6 v~~~m~--~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (145)
T d1o50a3           6 VCKLIS--LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLIA   83 (145)
T ss_dssp             HTTSSC--CCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHHHCCCC-------CCCCCSS
T ss_pred             hHHhCC--CCCEEECCcCcHHHHHHHHHHcCCceEEEeccCcceeeeeccchhhhhhhcccccccchhHHHHhhhhhccc
Confidence            567777  6889999999999999999999999999998 899999999999974332110              11123


Q ss_pred             cccccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHH
Q 017536          209 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (369)
Q Consensus       209 ~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~  268 (369)
                      .++.++| .+++++.+++++.+|+++|.+++++++||||++|+++|+||..||++++...
T Consensus        84 ~~~~~~~-~~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g~i~Gvit~~dil~~l~~~  142 (145)
T d1o50a3          84 KNASEIM-LDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKG  142 (145)
T ss_dssp             CBHHHHC-BCCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHS
T ss_pred             cCHHHHc-CCCEEEcCCCCHHHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHhc
Confidence            4566666 5778999999999999999999999999999999999999999999987654

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.79  E-value=1.8e-19  Score=141.42  Aligned_cols=119  Identities=26%  Similarity=0.311  Sum_probs=104.5

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCC----------ccccccc
Q 017536          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLP----------ADSTLVE  212 (369)
Q Consensus       143 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~----------~~~~~v~  212 (369)
                      +++++|.  ++++++++++++.+|++.|.+++++++||++ ++++|+++..|++ +.+.....          ....+++
T Consensus         2 ~V~~lM~--~~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d-~~lvg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~   77 (135)
T d3ddja2           2 NIETLMI--KNPPILSKEDRLGSAFKKINEGGIGRIIVAN-EKIEGLLTTRDLL-STVESYCKDSCSQGDLYHISTTPII   77 (135)
T ss_dssp             SGGGTCE--ESCCEECTTSBHHHHHHHTTGGGCCEEEEES-SSEEEEEEHHHHH-GGGTTCC---CCHHHHHHHHTSBGG
T ss_pred             EeeEEee--CCCeEECCCCcHHHHHHHHHHhCCeEEEEEe-cceeceeeccchh-hhhccccccchhhhhccccccCCHH
Confidence            5889998  5799999999999999999999999999985 4699999999997 44322211          1256899


Q ss_pred             cccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHH
Q 017536          213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (369)
Q Consensus       213 ~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~  265 (369)
                      ++|++++.++++++++.+|+++|.+++++++||+|++|+++|+||.+||++++
T Consensus        78 ~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dil~~~  130 (135)
T d3ddja2          78 DYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLY  130 (135)
T ss_dssp             GTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGG
T ss_pred             HHhCCccceEEeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999843

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.78  E-value=8.5e-19  Score=141.69  Aligned_cols=124  Identities=14%  Similarity=0.045  Sum_probs=105.6

Q ss_pred             CCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe---CCEEEEEeehHHHHHHHHhcC--------------
Q 017536          141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQN--------------  203 (369)
Q Consensus       141 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d---~~~~~Giit~~dll~~~~~~~--------------  203 (369)
                      ..+++++|+  ++++++++++++.+|++.|.+++++++||++   ++.++|+++..|++..+....              
T Consensus        10 ~~~V~diM~--~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~~~~~~~   87 (160)
T d2d4za3          10 NIQVGDIMV--RDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPFEEMLTL   87 (160)
T ss_dssp             SCBTTSSSB--SSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCSCCBH
T ss_pred             ceEHHHhcC--CCCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccchhhcccc
Confidence            457999999  6899999999999999999999999999998   368999999999973332210              


Q ss_pred             ----------CCccccccccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHH
Q 017536          204 ----------LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (369)
Q Consensus       204 ----------~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~  267 (369)
                                .......+.++|.++++++++++++.++++.|.+.+++++||+| +|+++|+||++||++++.|
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d-~g~lvGiIt~~Di~k~I~g  160 (160)
T d2d4za3          88 EEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIEG  160 (160)
T ss_dssp             HHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC
T ss_pred             chhhhhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHHHhCC
Confidence                      01113446678999999999999999999999999999999998 6999999999999998753

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.78  E-value=7.6e-19  Score=138.91  Aligned_cols=126  Identities=21%  Similarity=0.413  Sum_probs=106.8

Q ss_pred             cccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHH
Q 017536           41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK  119 (369)
Q Consensus        41 ~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (369)
                      .+|+++|+++++++++++|+.+|+++|.+++++++||++ +++++|+++..|+++.........                
T Consensus         2 ~~V~~iMt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~~~~~g~i~~~di~~~~~~~~~~~----------------   65 (141)
T d3ddja1           2 FPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKL----------------   65 (141)
T ss_dssp             CBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHT----------------
T ss_pred             EeeHHhCcCCCeEEcCcCcHHHHHHHHHHcCCCeeecccccCccccccccccchhhhhcccccc----------------
Confidence            489999999999999999999999999999999999998 789999999999887643221110                


Q ss_pred             hcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHH
Q 017536          120 HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMR  198 (369)
Q Consensus       120 ~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~  198 (369)
                                     ........+++++|.  ++++++++++++.++++.|.+++.+++||+| +|+++|+||.+|+++.
T Consensus        66 ---------------~~~~~~~~~v~~im~--~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~~Dil~~  128 (141)
T d3ddja1          66 ---------------DPDYFYGKVVKDVMV--TNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIA  128 (141)
T ss_dssp             ---------------CTHHHHTCBHHHHSB--CCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             ---------------ccccccCCCHHHHhC--cccccccccchhhHHHHHHHHcCCCEEEEEccCCEEEEEEEHHHHHHH
Confidence                           001123456889998  6899999999999999999999999999998 8999999999999844


Q ss_pred             H
Q 017536          199 V  199 (369)
Q Consensus       199 ~  199 (369)
                      +
T Consensus       129 l  129 (141)
T d3ddja1         129 L  129 (141)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.77  E-value=5.6e-19  Score=145.59  Aligned_cols=141  Identities=17%  Similarity=0.198  Sum_probs=115.0

Q ss_pred             HHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe--CCEEEEEeehHHHHHHHHhc----CCC
Q 017536          132 IETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQ----NLP  205 (369)
Q Consensus       132 ~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d--~~~~~Giit~~dll~~~~~~----~~~  205 (369)
                      .+.+...+...++.++|.+..++++++++.++.+|+..|.+++++++||++  .++++|++|.+|+++.+...    ...
T Consensus        10 ~~~i~~fl~~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~~~~~~~~   89 (179)
T d2ooxe1          10 LKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFP   89 (179)
T ss_dssp             HHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCG
T ss_pred             HHHHHHHHcCCEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhccccccch
Confidence            344555566678999999777899999999999999999999999999998  47999999999998443321    100


Q ss_pred             c--------------cccccccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCC-----cEEEEEeHHHHHHHHH
Q 017536          206 A--------------DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDG-----DVVDVVDVIHITHAAV  266 (369)
Q Consensus       206 ~--------------~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g-----~~~Givt~~di~~~~~  266 (369)
                      .              ........|.++++++++++++.+|+..|.+++++++||+|++|     +++|+||.+||++++.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l~  169 (179)
T d2ooxe1          90 EAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFIS  169 (179)
T ss_dssp             GGGGGGGGSBHHHHHHHHHHTTCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHH
T ss_pred             hhhhhhhccchhhhcccceeeeecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHHH
Confidence            0              01123456788999999999999999999999999999999765     5999999999999988


Q ss_pred             HHhcCC
Q 017536          267 ATVGNT  272 (369)
Q Consensus       267 ~~~~~~  272 (369)
                      ..+.+.
T Consensus       170 ~~~~~~  175 (179)
T d2ooxe1         170 MNCKET  175 (179)
T ss_dssp             TTCGGG
T ss_pred             HhhhHh
Confidence            776543

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=6.6e-19  Score=139.99  Aligned_cols=124  Identities=15%  Similarity=0.160  Sum_probs=102.1

Q ss_pred             CccccccC-CCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcC-CCccccc------ccc
Q 017536          143 SLSTIIPE-KSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN-LPADSTL------VEK  213 (369)
Q Consensus       143 ~v~~im~~-~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~-~~~~~~~------v~~  213 (369)
                      +++++... .++++++.+++++.+|++.|.+++++++||++ +|+++|++|..|++ ..+... ......+      ...
T Consensus        10 ~l~~l~i~~~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~~~~~Gvit~~di~-~~l~~~~~~~~~~~v~~~~~~~~   88 (145)
T d2v8qe1          10 SLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVI-NLAAEKTYNNLDVSVTKALQHRS   88 (145)
T ss_dssp             BHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTG-GGGGSSCCCCCSSBHHHHGGGCC
T ss_pred             CHHHHcCCCCCCceEEcCcCcHHHHHHHHHHcCCCcccccccCCceEEEEEcchhh-hhhhcccccchhhhhhhccchhh
Confidence            34444332 25689999999999999999999999999999 88999999999997 444332 2222223      334


Q ss_pred             ccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHH
Q 017536          214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (369)
Q Consensus       214 ~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~  267 (369)
                      .|..+++++.+++++.+++++|.+++.+++||+|++|+++|+||..||+++++.
T Consensus        89 ~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~~dii~~lv~  142 (145)
T d2v8qe1          89 HYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVL  142 (145)
T ss_dssp             SCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHS
T ss_pred             hccCCCeEECCCCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEHHHHHHHHHh
Confidence            566788999999999999999999999999999999999999999999998763

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.77  E-value=6.6e-19  Score=139.31  Aligned_cols=118  Identities=20%  Similarity=0.209  Sum_probs=103.8

Q ss_pred             cccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHH
Q 017536           41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK  119 (369)
Q Consensus        41 ~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (369)
                      ++|+++|++++.++++++++.+|++.|.+++++.+||+| +|+++|+++..|+++.....                    
T Consensus         3 m~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~~~~~Giit~~di~~~~~~~--------------------   62 (142)
T d1pvma4           3 MRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPR--------------------   62 (142)
T ss_dssp             CBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGG--------------------
T ss_pred             EEHHHhCCCCCcEECCcCcHHHHHHHHHHCCCceEeeeccCCcccceEEeechhhhhhhh--------------------
Confidence            589999999999999999999999999999999999998 68999999999998652210                    


Q ss_pred             hcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          120 HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       120 ~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                        +.              .....+++++|.  .+++++++++++.++++.|.+++.+++||+| +|+++|++|..|++
T Consensus        63 --~~--------------~~~~~~v~~im~--~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l~Giit~~Dil  122 (142)
T d1pvma4          63 --NK--------------KPDEVPIRLVMR--KPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLS  122 (142)
T ss_dssp             --CC--------------CGGGSBGGGTSB--SSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHT
T ss_pred             --cc--------------cccccccccccc--cccccccchhhHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHH
Confidence              00              012346889998  6899999999999999999999999999999 88999999999998

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.76  E-value=2.1e-18  Score=132.54  Aligned_cols=115  Identities=19%  Similarity=0.156  Sum_probs=103.2

Q ss_pred             cccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHH
Q 017536           41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK  119 (369)
Q Consensus        41 ~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (369)
                      ++|+++|+++++++++++|+.+|++.|.+++++++||+| +|+++|+++..|+++.                        
T Consensus         1 m~v~~~m~~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii~~~dl~~~------------------------   56 (121)
T d1vr9a3           1 MKVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDL------------------------   56 (121)
T ss_dssp             CBGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTS------------------------
T ss_pred             CCchhhhcCCCeEECCCCCHHHHHHhhhhcCcEEEEEEeCCceeEEEeehhhhhhh------------------------
Confidence            478999999999999999999999999999999999998 7999999999998642                        


Q ss_pred             hcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHH
Q 017536          120 HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMR  198 (369)
Q Consensus       120 ~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~  198 (369)
                                         ....++.++|.  .+++++++++++.++++.|.+++..++||++ +|+++|++|..|+++.
T Consensus        57 -------------------~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvde~g~~~Gvit~~dil~~  115 (121)
T d1vr9a3          57 -------------------DLDSSVFNKVS--LPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEA  115 (121)
T ss_dssp             -------------------CTTSBSGGGCB--CTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHH
T ss_pred             -------------------hcccccccccc--CccEEECCCCCHHHHHHHHHhcCceeeeeECCCCeEEEEEEHHHHHHH
Confidence                               22346888988  5788999999999999999999999999998 8999999999999854


Q ss_pred             HH
Q 017536          199 VI  200 (369)
Q Consensus       199 ~~  200 (369)
                      +.
T Consensus       116 l~  117 (121)
T d1vr9a3         116 LI  117 (121)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.76  E-value=7.5e-18  Score=136.01  Aligned_cols=147  Identities=16%  Similarity=0.119  Sum_probs=111.0

Q ss_pred             CCcccccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeC---CeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHH
Q 017536           37 NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN---GEVIALLDIAKCLYDAIARMERAAEKGKAIAAA  113 (369)
Q Consensus        37 ~~~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~  113 (369)
                      +..+.+|+|+|+++++++++++++.+|+++|.+++++++||+|+   +.++|+++..|++..+........         
T Consensus         7 ~~~~~~V~diM~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~---------   77 (160)
T d2d4za3           7 NKYNIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYR---------   77 (160)
T ss_dssp             CCSSCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTS---------
T ss_pred             CccceEHHHhcCCCCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhcccccc---------
Confidence            34477999999999999999999999999999999999999972   689999999999877554321100         


Q ss_pred             HHhHHHhcCCCCCChhhHHHHH--HHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEee
Q 017536          114 VEGVEKHWGTSISGPNTFIETL--RERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILT  191 (369)
Q Consensus       114 ~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit  191 (369)
                           .................  ........+.++|.  ..++++++++++.++++.|.+++++++||+++|+++|+||
T Consensus        78 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d~g~lvGiIt  150 (160)
T d2d4za3          78 -----RQPFEEMLTLEEIYRWEQREKNVVVNFETCRID--QSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSMGKLVGVVA  150 (160)
T ss_dssp             -----SSCCCSCCBHHHHHHHHHHHTTCBCCTTSSCEE--CCSCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEE
T ss_pred             -----ccchhhccccchhhhhhhhhcccccceeeeccc--CCCEEEcCCCCHHHHHHHHHHcCCeEEEEEECCEEEEEEE
Confidence                 00000011111111111  11233445677888  6789999999999999999999999999999999999999


Q ss_pred             hHHHHHHHH
Q 017536          192 SKDILMRVI  200 (369)
Q Consensus       192 ~~dll~~~~  200 (369)
                      .+|++ +.+
T Consensus       151 ~~Di~-k~I  158 (160)
T d2d4za3         151 LAEIQ-AAI  158 (160)
T ss_dssp             HHHHH-HHH
T ss_pred             HHHHH-HHh
Confidence            99998 544

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.76  E-value=1.1e-18  Score=135.13  Aligned_cols=114  Identities=15%  Similarity=0.249  Sum_probs=100.6

Q ss_pred             ccccccccCCeEEeCCCcHHHHHHHHHhC-----CCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 017536           42 PVSKVMTRNPTFVLSDTLAVEALQKMVQG-----KFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE  115 (369)
Q Consensus        42 ~v~dim~~~~i~v~~~~~l~~a~~~m~~~-----~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~  115 (369)
                      ++..+|+++++++++++|+.+|++.|+++     +++.+||+| +|+++|+++..+++..                    
T Consensus         2 taG~iM~~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~~l~~~--------------------   61 (127)
T d2ouxa2           2 TAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVN--------------------   61 (127)
T ss_dssp             BHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTS--------------------
T ss_pred             ChhHhCCCCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecCCeEEEEEEeeccccc--------------------
Confidence            56789999999999999999999999876     478999999 7999999999887532                    


Q ss_pred             hHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHH
Q 017536          116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKD  194 (369)
Q Consensus       116 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~d  194 (369)
                                             ....+++++|.  ++++++++++++.+|++.|.+++++++||+| +|+++|+||.+|
T Consensus        62 -----------------------~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~D  116 (127)
T d2ouxa2          62 -----------------------DDDTLIADILN--ERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDD  116 (127)
T ss_dssp             -----------------------CTTSBHHHHSB--SCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHH
T ss_pred             -----------------------cccEEhhhhcc--CCCccCCCCCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHHH
Confidence                                   12356889998  6788999999999999999999999999998 899999999999


Q ss_pred             HHHHHHh
Q 017536          195 ILMRVIS  201 (369)
Q Consensus       195 ll~~~~~  201 (369)
                      ++ .++.
T Consensus       117 il-~~i~  122 (127)
T d2ouxa2         117 II-DVID  122 (127)
T ss_dssp             HH-HHHH
T ss_pred             HH-HHHH
Confidence            98 5543

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=8.2e-18  Score=137.09  Aligned_cols=128  Identities=13%  Similarity=0.164  Sum_probs=104.0

Q ss_pred             CccccccCCCc----eeEeCCCCcHHHHHHHHHHcCCceEEEEe---CCEEEEEeehHHHHHHHHhc-------------
Q 017536          143 SLSTIIPEKSK----VVTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQ-------------  202 (369)
Q Consensus       143 ~v~~im~~~~~----~~~v~~~~~l~~~~~~m~~~~~~~~~V~d---~~~~~Giit~~dll~~~~~~-------------  202 (369)
                      .++|+|.|+..    .+.+.++.|+.++.++|.+++++++||++   +++++|++|.+|++..+...             
T Consensus         4 ~a~DiM~p~~~~~~~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~~~~   83 (169)
T d2j9la1           4 LAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSII   83 (169)
T ss_dssp             BHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTCEE
T ss_pred             chhhhcCcCCCCCceEEECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccchhh
Confidence            46788987432    24567888999999999999999999994   67899999999998433211             


Q ss_pred             ----------CCCccccccccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHhcC
Q 017536          203 ----------NLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGN  271 (369)
Q Consensus       203 ----------~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~~~  271 (369)
                                .......++.++|.++++++++++++.+++++|.+++.+++||+| +|+++|+||+.||++++....+.
T Consensus        84 ~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d-~g~lvGiIt~~Dil~~l~~~~~~  161 (169)
T d2j9la1          84 YFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQMANQ  161 (169)
T ss_dssp             ECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHHHCC-
T ss_pred             hhcccchhhhhccccccchhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEE-CCEEEEEEEHHHHHHHHHHHhcC
Confidence                      001114568999999999999999999999999999999999987 78999999999999988765543

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.75  E-value=6.9e-20  Score=140.59  Aligned_cols=109  Identities=20%  Similarity=0.303  Sum_probs=59.4

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCCceEEEEe----CCEEEEEeehHHHHHHHHhcCCCccccccccccc--cCCceecCC
Q 017536          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV----ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT--PNPECATID  225 (369)
Q Consensus       152 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d----~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~--~~~~~v~~~  225 (369)
                      ++++++++++++.+|+++|.+++++++||++    +++++|++|.+|+. .......   ..++..+|.  +++++++++
T Consensus         4 ~~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~-~~~~~~~---~~~~~~~~~~~~~~~~v~~~   79 (120)
T d1jr1a4           4 TDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDID-FLKEEEH---DRFLEEIMTKREDLVVAPAG   79 (120)
T ss_dssp             CTTCC----CCCC--CCBC---------------CTTCCC--------------------------CCSBTTTSCCEETT
T ss_pred             cCCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeee-ehhcccc---CceeEEEEeeccCceEECCC
Confidence            4577999999999999999999999999997    46899999999984 4433322   345555553  467999999


Q ss_pred             CCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHH
Q 017536          226 TPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (369)
Q Consensus       226 ~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~  264 (369)
                      +++.+|+++|.+++++++||||++|+++|+||+.||+++
T Consensus        80 ~~~~~a~~~m~~~~i~~lpVVd~~~~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          80 ITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLKKN  118 (120)
T ss_dssp             CCHHHHHHHTCSCC---CEEEETTTEEEEEECHHHHHHH
T ss_pred             CCHHHHHHHHHHcCccEEEEEcCCCEEEEEEEHHHhhhc
Confidence            999999999999999999999999999999999999985

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.74  E-value=2.4e-18  Score=134.93  Aligned_cols=129  Identities=18%  Similarity=0.249  Sum_probs=105.5

Q ss_pred             cccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHh
Q 017536           41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH  120 (369)
Q Consensus        41 ~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (369)
                      ++|+++|.++++++.+++++.+|++.|.+++++++||+|+ +++|+++..+++........                   
T Consensus         1 m~V~~lM~~~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~-~lvg~~~~~~~~~~~~~~~~-------------------   60 (135)
T d3ddja2           1 MNIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVANE-KIEGLLTTRDLLSTVESYCK-------------------   60 (135)
T ss_dssp             SSGGGTCEESCCEECTTSBHHHHHHHTTGGGCCEEEEESS-SEEEEEEHHHHHGGGTTCC--------------------
T ss_pred             CEeeEEeeCCCeEECCCCcHHHHHHHHHHhCCeEEEEEec-ceeceeeccchhhhhccccc-------------------
Confidence            4789999999999999999999999999999999999865 69999999998765321100                   


Q ss_pred             cCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHH
Q 017536          121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRV  199 (369)
Q Consensus       121 ~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~  199 (369)
                              ..............+++++|.  .++.++++++++.+|++.|.+++++++||+| +|+++|+||.+|++ ++
T Consensus        61 --------~~~~~~~~~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dil-~~  129 (135)
T d3ddja2          61 --------DSCSQGDLYHISTTPIIDYMT--PNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFL-LL  129 (135)
T ss_dssp             ----------CCHHHHHHHHTSBGGGTSE--ESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHG-GG
T ss_pred             --------cchhhhhccccccCCHHHHhC--CccceEEeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEHHHHH-HH
Confidence                    000111122334567999998  6899999999999999999999999999998 89999999999998 54


Q ss_pred             H
Q 017536          200 I  200 (369)
Q Consensus       200 ~  200 (369)
                      +
T Consensus       130 ~  130 (135)
T d3ddja2         130 Y  130 (135)
T ss_dssp             G
T ss_pred             H
Confidence            4

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.74  E-value=6.7e-18  Score=134.03  Aligned_cols=135  Identities=18%  Similarity=0.204  Sum_probs=103.6

Q ss_pred             ccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHh
Q 017536           42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH  120 (369)
Q Consensus        42 ~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (369)
                      .+.++|+++++++.+++++.+|++.|.+++++++||+| +|+++|+++..|+++...........               
T Consensus         5 ~v~~~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vGiis~~Dl~~~~~~~~~~~~~---------------   69 (145)
T d1o50a3           5 DVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIP---------------   69 (145)
T ss_dssp             HHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHHHCCCC---------------
T ss_pred             EhHHhCCCCCEEECCcCcHHHHHHHHHHcCCceEEEeccCcceeeeeccchhhhhhhcccccccc---------------
Confidence            46778999999999999999999999999999999998 79999999999998765432211000               


Q ss_pred             cCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHH
Q 017536          121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRV  199 (369)
Q Consensus       121 ~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~  199 (369)
                             ...........+...+++++|.   +++++.+++++.+|++.|.+++.+++||+| +|+++|+||.+|++ ++
T Consensus        70 -------~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g~i~Gvit~~dil-~~  138 (145)
T d1o50a3          70 -------KEELIRSSMKRLIAKNASEIML---DPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEIL-LA  138 (145)
T ss_dssp             --------------CCCCCSSCBHHHHCB---CCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHH-HH
T ss_pred             -------hhHHHHhhhhhccccCHHHHcC---CCEEEcCCCCHHHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHH-HH
Confidence                   0000000001123344566665   477899999999999999999999999998 89999999999999 44


Q ss_pred             Hhc
Q 017536          200 ISQ  202 (369)
Q Consensus       200 ~~~  202 (369)
                      +..
T Consensus       139 l~~  141 (145)
T d1o50a3         139 LWK  141 (145)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            443

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.73  E-value=2.2e-18  Score=136.54  Aligned_cols=113  Identities=20%  Similarity=0.249  Sum_probs=100.6

Q ss_pred             ccccccccCCeEEeCCCcHHHHHHHHHhCC-----CeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 017536           42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGK-----FRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE  115 (369)
Q Consensus        42 ~v~dim~~~~i~v~~~~~l~~a~~~m~~~~-----~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~  115 (369)
                      ++..+|+++++++++++|+.+|++.|++++     +..+||+| +|+++|+++.+|++..                    
T Consensus         2 taG~iM~~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~dl~~~--------------------   61 (144)
T d2yvxa2           2 EAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA--------------------   61 (144)
T ss_dssp             SSGGGCBSCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTTCBBCCBCBHHHHTTS--------------------
T ss_pred             CcccccCCCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCCCCEecccchhhhhhc--------------------
Confidence            578999999999999999999999998774     78899998 7999999999997542                    


Q ss_pred             hHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHH
Q 017536          116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKD  194 (369)
Q Consensus       116 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~d  194 (369)
                                             ....++.++|.  ++++++++++++.+|++.|.+++++++||+| +|+++|+||.+|
T Consensus        62 -----------------------~~~~~v~~im~--~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~D  116 (144)
T d2yvxa2          62 -----------------------DPRTRVAEIMN--PKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDD  116 (144)
T ss_dssp             -----------------------CTTCBSTTTSB--SSCCCEESSCCHHHHHHHHHHSCCSEEEEECSSCBEEEEEEHHH
T ss_pred             -----------------------ccccchHHhcc--cCCccCCCCChHHHHHHHHHHcCCCEEEEEeECCEEEEEEEHHH
Confidence                                   22356889998  6899999999999999999999999999999 799999999999


Q ss_pred             HHHHHH
Q 017536          195 ILMRVI  200 (369)
Q Consensus       195 ll~~~~  200 (369)
                      ++ +.+
T Consensus       117 il-~~l  121 (144)
T d2yvxa2         117 VL-DVL  121 (144)
T ss_dssp             HH-HHH
T ss_pred             HH-HHH
Confidence            98 444

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.72  E-value=3.3e-17  Score=127.59  Aligned_cols=115  Identities=17%  Similarity=0.215  Sum_probs=96.8

Q ss_pred             cccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee---CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhH
Q 017536           41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE---NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV  117 (369)
Q Consensus        41 ~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd---~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~  117 (369)
                      ++|+|+|+++++++++++|+.+|++.|.+++++++||++   +++++|+++..++++.....                  
T Consensus         1 ~~V~dim~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~------------------   62 (131)
T d2riha1           1 IRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQR------------------   62 (131)
T ss_dssp             CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTT------------------
T ss_pred             CCHHHhccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccccccccc------------------
Confidence            479999999999999999999999999999999999994   48899999999987652210                  


Q ss_pred             HHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          118 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       118 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                                           .........+.  .+++++.+++++.++++.|.+++++++||++ +|+++|++|..|++
T Consensus        63 ---------------------~~~~~~~~~~~--~~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g~l~Giit~~Dll  119 (131)
T d2riha1          63 ---------------------LDLDGPAMPIA--NSPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLC  119 (131)
T ss_dssp             ---------------------CCTTSBSGGGC--BCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHH
T ss_pred             ---------------------ccccccccccc--ccceeEeeecchHHHHHHHHHCCeEEEEEEcCCCeEEEEEEHHHHH
Confidence                                 11111222333  4578899999999999999999999999998 89999999999998

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.72  E-value=2.8e-17  Score=127.03  Aligned_cols=109  Identities=18%  Similarity=0.280  Sum_probs=91.8

Q ss_pred             cccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee---CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCC
Q 017536           47 MTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE---NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGT  123 (369)
Q Consensus        47 m~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd---~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  123 (369)
                      |..+++++.+++++.+|+++|.+++++++||+|   +++++|+++..|++...                           
T Consensus         3 mi~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~---------------------------   55 (126)
T d1zfja4           3 VIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFIS---------------------------   55 (126)
T ss_dssp             TSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCS---------------------------
T ss_pred             CEeCceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhh---------------------------
Confidence            667889999999999999999999999999997   47899999999986430                           


Q ss_pred             CCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHH
Q 017536          124 SISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMR  198 (369)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~  198 (369)
                                     .........|.. .+++++++++++.+|+++|.+++++++||++ +|+++|+||.+|+++.
T Consensus        56 ---------------~~~~~~~~~~~~-~~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGiiT~~Dil~~  115 (126)
T d1zfja4          56 ---------------DYNAPISEHMTS-EHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKV  115 (126)
T ss_dssp             ---------------CSSSBTTTSCCC-SCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHH
T ss_pred             ---------------ccCCceeeeeec-cceeecCCCCCHHHHHHHHHhcCCcEEEEEcCCCeEEEEEEHHHHHHH
Confidence                           111223333432 5788899999999999999999999999998 8999999999999843

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.71  E-value=4.1e-18  Score=132.97  Aligned_cols=123  Identities=13%  Similarity=0.170  Sum_probs=101.1

Q ss_pred             cccccccc--cCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhH
Q 017536           41 TPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV  117 (369)
Q Consensus        41 ~~v~dim~--~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~  117 (369)
                      .+|+++|.  ++++++.+++++.+|++.|.+++++++||+| +|+++|+++..|++.+......                
T Consensus         2 ~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~~~vGiit~~di~~~~~~~~~----------------   65 (132)
T d1yava3           2 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLER----------------   65 (132)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSS----------------
T ss_pred             CCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecccccccEEEcchhHHHhhcccc----------------
Confidence            57899994  6899999999999999999999999999998 6999999999999876331100                


Q ss_pred             HHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          118 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       118 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                               .       ..+.....+++++|.  ++++++++++++.++++.|.+++  .+||++ +|+++|+||.+|++
T Consensus        66 ---------~-------~~~~~~~~~v~~~m~--~~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd~~~~~~Givt~~dil  125 (132)
T d1yava3          66 ---------I-------EFEKLDQITVEEVML--TDIPRLHINDPIMKGFGMVINNG--FVCVENDEQVFEGIFTRRVVL  125 (132)
T ss_dssp             ---------B-------CGGGTTTSBHHHHSB--CSCCEEETTSBHHHHHHHTTTCS--EEEEECTTCBEEEEEEHHHHH
T ss_pred             ---------c-------ccccccccccccccc--ccccccccchhHHHHHHHHHhCC--EEEEEccCCEEEEEEEHHHHH
Confidence                     0       001133467888998  67899999999999999998754  599998 89999999999998


Q ss_pred             HHH
Q 017536          197 MRV  199 (369)
Q Consensus       197 ~~~  199 (369)
                      +.+
T Consensus       126 ~~l  128 (132)
T d1yava3         126 KEL  128 (132)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=1.4e-16  Score=128.35  Aligned_cols=137  Identities=16%  Similarity=0.147  Sum_probs=103.4

Q ss_pred             ccccccccc--cCCeEEeCCCcHHHHHHHHHhCCCeEeeEee--CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 017536           40 ETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE  115 (369)
Q Consensus        40 ~~~v~dim~--~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~  115 (369)
                      ..+++|+|.  .+++++++++|+.+|++.|.+++++++||++  +++++|+++..|++...............       
T Consensus        12 ~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~~~~-------   84 (159)
T d2v8qe2          12 SHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIY-------   84 (159)
T ss_dssp             HSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCC-------
T ss_pred             CCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccchhh-------
Confidence            568999995  5789999999999999999999999999997  48999999999998875543221110000       


Q ss_pred             hHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe--CCEEEEEeehH
Q 017536          116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSK  193 (369)
Q Consensus       116 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d--~~~~~Giit~~  193 (369)
                               ....... ....     ....++|.  .+++++++++++.++++.|.+++.+++||++  +|+++|+||.+
T Consensus        85 ---------~~~~~~~-~~~~-----~~~~~~~~--~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~  147 (159)
T d2v8qe2          85 ---------ELEEHKI-ETWR-----EVYLQDSF--KPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHK  147 (159)
T ss_dssp             ---------CGGGCBH-HHHH-----HHHSSSSC--CCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHH
T ss_pred             ---------hhhhhhc-cccc-----ceeeeeec--cceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHH
Confidence                     0000000 0011     11345665  5789999999999999999999999999997  57999999999


Q ss_pred             HHHHHHHh
Q 017536          194 DILMRVIS  201 (369)
Q Consensus       194 dll~~~~~  201 (369)
                      |++ +++.
T Consensus       148 dil-k~l~  154 (159)
T d2v8qe2         148 RIL-KFLK  154 (159)
T ss_dssp             HHH-HHHH
T ss_pred             HHH-HHHH
Confidence            998 5543

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.68  E-value=1.9e-18  Score=132.42  Aligned_cols=111  Identities=9%  Similarity=0.171  Sum_probs=60.7

Q ss_pred             cccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee----CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcC
Q 017536           47 MTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE----NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWG  122 (369)
Q Consensus        47 m~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd----~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  122 (369)
                      |.++|+++.+++++.+|+++|.+++++++||+|    +++++|++|.+|+......                        
T Consensus         2 m~~~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~~------------------------   57 (120)
T d1jr1a4           2 FITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEE------------------------   57 (120)
T ss_dssp             EECTTCC----CCCC--CCBC---------------CTTCCC--------------------------------------
T ss_pred             cccCCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhcc------------------------
Confidence            667888999999999999999999999999997    3789999999997532110                        


Q ss_pred             CCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHH
Q 017536          123 TSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM  197 (369)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~  197 (369)
                                      ....++..+|..+.+++++++++++.+|+++|.+++++++||++ +|+++|+||.+|+++
T Consensus        58 ----------------~~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~~~~lvGiiT~~Di~k  117 (120)
T d1jr1a4          58 ----------------EHDRFLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLKK  117 (120)
T ss_dssp             ------------------------CCSBTTTSCCEETTCCHHHHHHHTCSCC---CEEEETTTEEEEEECHHHHHH
T ss_pred             ----------------ccCceeEEEEeeccCceEECCCCCHHHHHHHHHHcCccEEEEEcCCCEEEEEEEHHHhhh
Confidence                            01123455555446789999999999999999999999999998 899999999999983

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=3e-16  Score=123.51  Aligned_cols=129  Identities=19%  Similarity=0.232  Sum_probs=95.4

Q ss_pred             cccccc---ccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 017536           40 ETPVSK---VMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE  115 (369)
Q Consensus        40 ~~~v~d---im~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~  115 (369)
                      +.++.+   +|.++++++.+++++.+|++.|.+++++++||+| +|+++|+++..|+++..........           
T Consensus         5 ~~~i~~l~~~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vG~it~~Di~~~~~~~~~~~~-----------   73 (140)
T d2nyca1           5 KIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDL-----------   73 (140)
T ss_dssp             GSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC----C-----------
T ss_pred             cCcHHHhCCccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCeEcceehhhHHHHHHhhcccccc-----------
Confidence            345554   4778999999999999999999999999999999 7899999999999876432211100           


Q ss_pred             hHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHH
Q 017536          116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKD  194 (369)
Q Consensus       116 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~d  194 (369)
                                .  ......+.       ....+.  .+++++++++++.++++.|.+++.+++||+| +|+++|+||.+|
T Consensus        74 ----------~--~~~~~~~~-------~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~~~l~GiIt~~D  132 (140)
T d2nyca1          74 ----------S--LSVGEALM-------RRSDDF--EGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSD  132 (140)
T ss_dssp             ----------C--SBHHHHHH-------HCC--------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHH
T ss_pred             ----------c--cchhhhhh-------hhhhcc--cccEEECCCCcHHHHHHHHHhcCeeEEEEEeCCCeEEEEEEHHH
Confidence                      0  00000000       111222  4678999999999999999999999999998 999999999999


Q ss_pred             HHHHHH
Q 017536          195 ILMRVI  200 (369)
Q Consensus       195 ll~~~~  200 (369)
                      +++.++
T Consensus       133 ii~~l~  138 (140)
T d2nyca1         133 ILKYIL  138 (140)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            985543

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.65  E-value=4.6e-16  Score=124.36  Aligned_cols=127  Identities=17%  Similarity=0.184  Sum_probs=96.6

Q ss_pred             ccccccc---cCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhH
Q 017536           42 PVSKVMT---RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV  117 (369)
Q Consensus        42 ~v~dim~---~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~  117 (369)
                      |+++++.   ++++++.+++|+.+|+++|.+++++++||+| +|+++|+++..|++........      .         
T Consensus         2 pl~~~~ig~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~vG~it~~Dl~~~~~~~~~------~---------   66 (153)
T d2ooxe2           2 PLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDY------S---------   66 (153)
T ss_dssp             BGGGTCCSBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGGGBEEEEEEHHHHHHHHGGGCG------G---------
T ss_pred             CHHHcCCCCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeecccceEEEEEEeeeeeehhccccc------c---------
Confidence            5566653   5899999999999999999999999999998 6899999999998765321100      0         


Q ss_pred             HHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017536          118 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (369)
Q Consensus       118 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll  196 (369)
                                  .....+.+.+.   ....+.  .++.++++++++.++++.|.+++.+++||+| +|+++|++|.+|++
T Consensus        67 ------------~~~~~v~~~~~---~~~~~~--~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGivT~~Dil  129 (153)
T d2ooxe2          67 ------------NLDLSVGEALL---KRPANF--DGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADIL  129 (153)
T ss_dssp             ------------GGGSBHHHHHH---TSCCCS--SCCCEECTTCBHHHHHHHHHHSCCSEEEEECTTCBEEEEEEHHHHH
T ss_pred             ------------ccccchhhhee---eeeccc--CCCeEECCCCcHHHHHHhhhhceeeEEEEEcCCCEEEEEEEHHHHH
Confidence                        00000111111   122222  4678999999999999999999999999998 89999999999999


Q ss_pred             HHHH
Q 017536          197 MRVI  200 (369)
Q Consensus       197 ~~~~  200 (369)
                      +.++
T Consensus       130 ~~~~  133 (153)
T d2ooxe2         130 NYII  133 (153)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5444

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.65  E-value=3.6e-16  Score=128.43  Aligned_cols=144  Identities=15%  Similarity=0.130  Sum_probs=104.5

Q ss_pred             cccccccccc--cCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-C-CeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHH
Q 017536           39 EETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV  114 (369)
Q Consensus        39 ~~~~v~dim~--~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~-~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~  114 (369)
                      ...++.|+|.  .++++++++.|+.+|++.|.+++++++||+| + ++++|+++..|++..+..............    
T Consensus        18 ~~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~~~~~~~~~~~~----   93 (179)
T d2ooxe1          18 RSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIA----   93 (179)
T ss_dssp             HHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGGGGG----
T ss_pred             cCCEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhccccccchhhhh----
Confidence            4568999996  5789999999999999999999999999998 4 799999999999987654332211000000    


Q ss_pred             HhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CC-----EEEE
Q 017536          115 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-EN-----KPRG  188 (369)
Q Consensus       115 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~-----~~~G  188 (369)
                           ..      ..........   .......|.  .+++++++++++.+++..|.+++.+++||+| .|     +++|
T Consensus        94 -----~~------~~~~~~~~~~---~~~~~~~~~--~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvg  157 (179)
T d2ooxe1          94 -----EI------DKFRLLGLRE---VERKIGAIP--PETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVS  157 (179)
T ss_dssp             -----GG------GGSBHHHHHH---HHHHTTCSC--SSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEE
T ss_pred             -----hh------hccchhhhcc---cceeeeecc--cCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEE
Confidence                 00      0000000100   011334555  5789999999999999999999999999998 33     7999


Q ss_pred             EeehHHHHHHHHhcC
Q 017536          189 ILTSKDILMRVISQN  203 (369)
Q Consensus       189 iit~~dll~~~~~~~  203 (369)
                      ++|.+||+ +++...
T Consensus       158 iiT~~dIl-k~l~~~  171 (179)
T d2ooxe1         158 VLTQYRIL-KFISMN  171 (179)
T ss_dssp             EEEHHHHH-HHHHTT
T ss_pred             EEeHHHHH-HHHHHh
Confidence            99999999 555443

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=4.1e-15  Score=120.78  Aligned_cols=146  Identities=14%  Similarity=0.142  Sum_probs=102.2

Q ss_pred             cccccccccc----CC--eEEeCCCcHHHHHHHHHhCCCeEeeEee---CCeEEEEEehHHHHHHHHHHHHHHHhhhhHH
Q 017536           40 ETPVSKVMTR----NP--TFVLSDTLAVEALQKMVQGKFRHLPVVE---NGEVIALLDIAKCLYDAIARMERAAEKGKAI  110 (369)
Q Consensus        40 ~~~v~dim~~----~~--i~v~~~~~l~~a~~~m~~~~~~~lpVvd---~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~  110 (369)
                      ++.++|+|.+    ++  +.+.+++|+.+|+++|.+++++++||++   +++++|+++..|++.++..........   .
T Consensus         2 ~~~a~DiM~p~~~~~~~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~---~   78 (169)
T d2j9la1           2 KTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGV---V   78 (169)
T ss_dssp             CCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCC---C
T ss_pred             ccchhhhcCcCCCCCceEEECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhccccccccc---c
Confidence            3567889963    22  4456788999999999999999999993   478999999999987644221100000   0


Q ss_pred             HHHHHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEe
Q 017536          111 AAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGIL  190 (369)
Q Consensus       111 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Gii  190 (369)
                      .   .. ...++.....      .........+++++|.  ++++++.+++++.+++++|.+++.+++||.++|+++|+|
T Consensus        79 ~---~~-~~~~~~~~~~------~~~~~~~~~~v~~im~--~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d~g~lvGiI  146 (169)
T d2j9la1          79 S---TS-IIYFTEHSPP------LPPYTPPTLKLRNILD--LSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGII  146 (169)
T ss_dssp             T---TC-EEECSSSCCC------CCTTCCCCEECGGGEE--SSCCEEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEE
T ss_pred             c---ch-hhhhcccchh------hhhccccccchhhhcc--CCCEEECCCCcHHHHHHHHHhcCceEEEEEECCEEEEEE
Confidence            0   00 0000000000      0001123456789998  578999999999999999999999999999999999999


Q ss_pred             ehHHHHHHHHh
Q 017536          191 TSKDILMRVIS  201 (369)
Q Consensus       191 t~~dll~~~~~  201 (369)
                      |.+|++ +++.
T Consensus       147 t~~Dil-~~l~  156 (169)
T d2j9la1         147 TKKDVL-KHIA  156 (169)
T ss_dssp             EHHHHH-HHHH
T ss_pred             EHHHHH-HHHH
Confidence            999998 4443

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=2.3e-15  Score=119.14  Aligned_cols=130  Identities=18%  Similarity=0.229  Sum_probs=98.5

Q ss_pred             ccccccc---ccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 017536           41 TPVSKVM---TRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG  116 (369)
Q Consensus        41 ~~v~dim---~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~  116 (369)
                      .++++++   .++++++.+++|+.+|++.|.+++++++||+| +|+++|+++..|++......                 
T Consensus         9 ~~l~~l~i~~~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~~~~~Gvit~~di~~~l~~~-----------------   71 (145)
T d2v8qe1           9 KSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEK-----------------   71 (145)
T ss_dssp             SBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSS-----------------
T ss_pred             CCHHHHcCCCCCCceEEcCcCcHHHHHHHHHHcCCCcccccccCCceEEEEEcchhhhhhhcc-----------------
Confidence            3556553   36789999999999999999999999999999 78999999999987542110                 


Q ss_pred             HHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHH
Q 017536          117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI  195 (369)
Q Consensus       117 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dl  195 (369)
                             ........   ..+.   ......|.  .+++++.+++++.++++.|.+++.+++||+| +|+++|+||.+|+
T Consensus        72 -------~~~~~~~~---v~~~---~~~~~~~~--~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~~di  136 (145)
T d2v8qe1          72 -------TYNNLDVS---VTKA---LQHRSHYF--EGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDI  136 (145)
T ss_dssp             -------CCCCCSSB---HHHH---GGGCCSCC--CSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHH
T ss_pred             -------cccchhhh---hhhc---cchhhhcc--CCCeEECCCCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEHHHH
Confidence                   00000000   0011   11334454  5688999999999999999999999999998 8999999999999


Q ss_pred             HHHHHhc
Q 017536          196 LMRVISQ  202 (369)
Q Consensus       196 l~~~~~~  202 (369)
                      ++.++..
T Consensus       137 i~~lv~~  143 (145)
T d2v8qe1         137 LQALVLT  143 (145)
T ss_dssp             HHHHHSS
T ss_pred             HHHHHhc
Confidence            9666543

>d2o1ra1 d.145.1.4 (A:1-78) Hypothetical protein HI0107 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hypothetical protein HI0107
species: Haemophilus influenzae [TaxId: 727]

Probab=97.75  E-value=3.4e-06  Score=57.37  Aligned_cols=53  Identities=6%  Similarity=0.045  Sum_probs=43.7

Q ss_pred             HHhhcCCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEEEcCCC-ceEEe
Q 017536          289 DSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKG-LMHRF  349 (369)
Q Consensus       289 ~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~  349 (369)
                      +..+....++++++|++|++...++++|+.|+.+.+.++.        |+|.++++ ++.+.
T Consensus        20 ~~~l~~~l~~~~~~Ti~G~v~~~lg~iP~~Ge~v~~~~~~--------f~V~~~~~~rI~~V   73 (78)
T d2o1ra1          20 NKMFNWELDTEDARTFNGLILEHLEEIPDEGTICEIDGLL--------ITILEVGDNMIKQA   73 (78)
T ss_dssp             HHHHCCCCCCSSCSBHHHHHHHHCSSCCCTTCEEEETTEE--------EEEEEEETTEEEEE
T ss_pred             HHHHCCCCCCccchHHHHHHHHHhCcCCCCCCEEEECCEE--------EEEEEccCCeEEEE
Confidence            3344555566789999999999999999999999999999        99999876 55443

>d2plia1 d.145.1.4 (A:5-88) Uncharacterized protein NMB0537 {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Uncharacterized protein NMB0537
species: Neisseria meningitidis [TaxId: 487]

Probab=97.51  E-value=1.4e-05  Score=55.06  Aligned_cols=54  Identities=9%  Similarity=0.062  Sum_probs=43.8

Q ss_pred             HHhhcCCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEEEcCCC-ceEEee
Q 017536          289 DSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKG-LMHRFT  350 (369)
Q Consensus       289 ~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~  350 (369)
                      +..+....++++++|++|++...++++|+.|+.+.+.++.        |+|.++++ ++++.+
T Consensus        25 ~~~~~~~l~~~~~~TigG~i~~~l~~iP~~g~~v~~~~~~--------f~V~~~~~~rI~~V~   79 (84)
T d2plia1          25 NTFFGTEYSSEEADTIGGLVIQELGHLPVRGEKVLIGGLQ--------FTVARADNRRLHTLM   79 (84)
T ss_dssp             HHHHCCCCCCSSCCBHHHHHHHHHSSCCCTTCEEEETTEE--------EEEEEECSSCEEEEE
T ss_pred             HHHhCCCCCccccHHHHHHHHHHhCccccCCcEEEECCEE--------EEEEEccCCeEEEEE
Confidence            3344455566789999999999999999999999999999        99999864 454443

>d2p4pa1 d.145.1.4 (A:1-82) Hypothetical protein HD1797 {Haemophilus ducreyi [TaxId: 730]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hypothetical protein HD1797
species: Haemophilus ducreyi [TaxId: 730]

Probab=97.49  E-value=1.2e-05  Score=55.13  Aligned_cols=46  Identities=9%  Similarity=0.159  Sum_probs=39.5

Q ss_pred             CCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEEEcCC-CceEEee
Q 017536          297 NDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNK-GLMHRFT  350 (369)
Q Consensus       297 ~~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~-g~~~~~~  350 (369)
                      ++++|+|++|++...++++|+.|+.+.+.++.        |+|.+++ .++.+.+
T Consensus        30 ~~~~~~TlgG~i~~~lg~iP~~Ge~v~~~~~~--------f~V~~~~~~rI~~V~   76 (82)
T d2p4pa1          30 RDENYETIGGFMMYMLRKIPKKTDFVLYDKYK--------FEIIDTENFRIDQLM   76 (82)
T ss_dssp             CSCSSCBHHHHHHHHHCSCCCTTCEEEETTEE--------EEEEEEETTEEEEEE
T ss_pred             cccCccCHHHHHHHHhCcCCCCCCEEEECCEE--------EEEEEeecCeEEEEE
Confidence            45578999999999999999999999999999        9999985 4554444

>d2o3ga1 d.145.1.4 (A:180-255) Putative protein NMB1485 {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Putative protein NMB1485
species: Neisseria meningitidis [TaxId: 487]

Probab=97.41  E-value=1.1e-05  Score=54.46  Aligned_cols=44  Identities=11%  Similarity=0.167  Sum_probs=38.1

Q ss_pred             CCCccccccccccccCCCCccccccCCCCCCCCCCceeEEEEcCCC-ceEEee
Q 017536          299 DEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKG-LMHRFT  350 (369)
Q Consensus       299 ~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~  350 (369)
                      .+|+|++|++...++++|+.|+.+.+.++.        |+|.++++ ++.+.+
T Consensus        27 ~~~~Ti~G~vl~~lg~iP~~Ge~v~~~~~~--------f~V~~~~~~rI~~V~   71 (76)
T d2o3ga1          27 ADFHTVAGLIMEELQTIPDVGDFADFHGWR--------FEVVEKEGQRIERVK   71 (76)
T ss_dssp             CSCSBHHHHHHHHHTSCCCTTCEEEETTEE--------EEEEEEETTEEEEEE
T ss_pred             cccccHHHHHHHHhCcCCCCCCEEEECCEE--------EEEEEeeCCeEEEEE
Confidence            368999999999999999999999999999        99999864 454443

>d2p13a1 d.145.1.4 (A:431-515) Uncharacterized protein NE2227 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Uncharacterized protein NE2227
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.35  E-value=2.8e-05  Score=53.60  Aligned_cols=40  Identities=5%  Similarity=-0.116  Sum_probs=36.8

Q ss_pred             CCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEEEcCCCc
Q 017536          298 DDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGL  345 (369)
Q Consensus       298 ~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g~  345 (369)
                      +++|+|++|++...++++|+.|+.+.+.++.        |+|.+++++
T Consensus        36 ~~~~~TlgG~i~~~lg~iP~~Ge~v~~~~~~--------f~V~~~~~~   75 (85)
T d2p13a1          36 AERYSTLGGYLLWQFGYIPAAGEQITVDGLI--------FEIVSVNKH   75 (85)
T ss_dssp             TCCCCBHHHHHHHHHSSCCCTTCEEEETTEE--------EEECCBCSS
T ss_pred             cccceEHHHHHHHHhCcCCCCCCEEEECCEE--------EEEEEeeCC
Confidence            4578999999999999999999999999999        999999755

>d2r2za1 d.145.1.4 (A:5-88) Putative hemolysin EF0700 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Putative hemolysin EF0700
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.35  E-value=2.2e-05  Score=53.98  Aligned_cols=55  Identities=4%  Similarity=-0.009  Sum_probs=42.4

Q ss_pred             HHhhcCCCCCCCCccccccccccccCCCCcccc--ccCCCCCCCCCCceeEEEEcCC-CceEEeec
Q 017536          289 DSAMALSPNDDEEDNRSEGSLKFASEGADTARY--LSYPSPSPGVPSAFAFKVQDNK-GLMHRFTC  351 (369)
Q Consensus       289 ~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~v~~~~-g~~~~~~~  351 (369)
                      +..+.+..++++++|++|++...++++|+.|+.  +.+.++.        |+|.+++ .++.+.++
T Consensus        23 ~~~l~~~l~~~~~~TigG~i~~~lg~iP~~Ge~~~i~~~~~~--------f~V~~~~~~rI~~v~v   80 (84)
T d2r2za1          23 NEVFETDLHMSDVDTMAGYLITALGTIPDEGEKPSFEVGNIK--------LTAEEMEGTRLLVLRV   80 (84)
T ss_dssp             HHHHTCCCCCTTCCBHHHHHHHHHSSCCCTTCCCEEEETTEE--------EEEEEEETTEEEEEEE
T ss_pred             HHHHCcCCCCccchhHHHHHHHHhCcCCCCCCEEEEEECCEE--------EEEEEccCCeEEEEEE
Confidence            334455556778999999999999999999995  4567888        9999985 45555443

>d2plsa1 d.145.1.4 (A:345-428) Hypothetical protein CT0541 {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hypothetical protein CT0541
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.33  E-value=4.2e-05  Score=52.60  Aligned_cols=44  Identities=9%  Similarity=-0.031  Sum_probs=38.0

Q ss_pred             CCCccccccccccccCCCCccccccCCCCCCCCCCceeEEEEcCCC-ceEEee
Q 017536          299 DEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKG-LMHRFT  350 (369)
Q Consensus       299 ~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~  350 (369)
                      ++|+|++|++...++++|+.|+.+.+.++.        |+|.++++ ++.+.+
T Consensus        35 ~~~~Tl~G~i~~~lg~iP~~Ge~v~~~~~~--------f~V~~~~~~rI~~v~   79 (84)
T d2plsa1          35 GVYHTLSGMIMWLLGRLPQTGDITFWENWR--------LEVIDMDSKRIDKVL   79 (84)
T ss_dssp             CSCCBHHHHHHHHHTSCCCTTCEEEETTEE--------EEEEEEETTEEEEEE
T ss_pred             ccccCHHHHHHHHhCccCCCCCEEEECCEE--------EEEEEeeCCeEEEEE
Confidence            458999999999999999999999999999        99999965 444443

>d3deda1 d.145.1.4 (A:341-427) Probable hemolysin CV0231 {Chromobacterium violaceum [TaxId: 536]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Probable hemolysin CV0231
species: Chromobacterium violaceum [TaxId: 536]

Probab=97.31  E-value=2.2e-05  Score=54.41  Aligned_cols=45  Identities=11%  Similarity=0.048  Sum_probs=38.7

Q ss_pred             CCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEEEcCCC-ceEEee
Q 017536          298 DDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKG-LMHRFT  350 (369)
Q Consensus       298 ~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~  350 (369)
                      +++|+|++|++...++++|+.|+.+.+.++.        |+|.++++ ++.+.+
T Consensus        37 ~~~~~TlgG~il~~lg~iP~~Ge~v~~~~~~--------f~V~~~d~~rI~~V~   82 (87)
T d3deda1          37 GGNIHTLAGVMLYQLGRVPSVTDRFEWNGFS--------FEVVDMDRTRVDKIL   82 (87)
T ss_dssp             GTCCCBHHHHHHHHHCSSCCTTCEEEETTEE--------EEEEEEETTEEEEEE
T ss_pred             cccccCHHHHHHHHhCcCCCCCCEEEECCEE--------EEEEEeeCCeEEEEE
Confidence            4578999999999999999999999999999        99999965 444443

>d2rk5a1 d.145.1.4 (A:5-88) Putative hemolysin SMU1693 {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Putative hemolysin SMU1693
species: Streptococcus mutans [TaxId: 1309]

Probab=97.22  E-value=5.2e-05  Score=52.11  Aligned_cols=53  Identities=9%  Similarity=0.011  Sum_probs=40.6

Q ss_pred             HhhcCCCCCCCCccccccccccccCCCCccccccCC------CCCCCCCCceeEEEEcCC-CceEEee
Q 017536          290 SAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYP------SPSPGVPSAFAFKVQDNK-GLMHRFT  350 (369)
Q Consensus       290 ~~~~~~~~~~~~~T~~~~~~~~~~~~~~~g~~~~~~------~~~~~~~~~~~~~v~~~~-g~~~~~~  350 (369)
                      ..+.+..++++++|++|++...++++|+.|+.+.++      .+.        |+|.+++ .++.+.+
T Consensus        21 ~~l~~~l~~~~~dTlgG~v~~~lg~iP~~Ge~~~~~~~~~~~~~~--------~~v~~~~~~rI~~v~   80 (84)
T d2rk5a1          21 EYFETDLESDNVDTIAGFYLTGVGTIPSQEEKEHFEVESNGKHLE--------LINDKVKDGRVTKLK   80 (84)
T ss_dssp             HHHTCCCCCTTCCBHHHHHHHHHCSCCCSSSCCEEEEEETTEEEE--------EEEEEEETTEEEEEE
T ss_pred             HHhCCCcccccchhHHHHHHHHhCcCCCCCCEEEEecccccCcEE--------EEEEEcccCEEEEEE
Confidence            334455567789999999999999999999999886      455        7887764 5565544

>d2oaia1 d.145.1.4 (A:5-91) Hemolysin TlyC {Xylella fastidiosa [TaxId: 2371]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hemolysin TlyC
species: Xylella fastidiosa [TaxId: 2371]

Probab=97.16  E-value=3.8e-05  Score=53.19  Aligned_cols=44  Identities=7%  Similarity=0.200  Sum_probs=38.1

Q ss_pred             CCCccccccccccccCCCCccccccCCCCCCCCCCceeEEEEcCCC-ceEEee
Q 017536          299 DEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKG-LMHRFT  350 (369)
Q Consensus       299 ~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~  350 (369)
                      .+|+|++|++...++++|+.|+.+.+.++.        |+|.++++ ++.+.+
T Consensus        38 ~~~~Tl~G~i~~~lg~iP~~Ge~v~~~~~~--------f~V~~~~~~rI~~v~   82 (87)
T d2oaia1          38 NNYHTLAGMCISYFGRIPHVGEYFDWAGWR--------IEIVDLDGARIDKLL   82 (87)
T ss_dssp             CCCSBHHHHHHHHHSSCCCTTCEEEETTEE--------EEEEEEETTEEEEEE
T ss_pred             cccccHHHHHHHHhCcCCCCCCEEEECCEE--------EEEEEeeCCeEEEEE
Confidence            468999999999999999999999999999        99999964 454443

>d2nqwa1 d.145.1.4 (A:4-90) Hypothetical protein PG0272 {Porphyromonas gingivalis [TaxId: 837]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hypothetical protein PG0272
species: Porphyromonas gingivalis [TaxId: 837]

Probab=97.09  E-value=4e-05  Score=53.09  Aligned_cols=45  Identities=20%  Similarity=0.144  Sum_probs=39.2

Q ss_pred             CCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEEEcCC-CceEEee
Q 017536          298 DDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNK-GLMHRFT  350 (369)
Q Consensus       298 ~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~-g~~~~~~  350 (369)
                      +++++|++|++...++++|+.|+.+.+.++.        |+|.+++ .++.+.+
T Consensus        37 ~~~~~Ti~G~i~~~lg~iP~~Ge~v~~~~~~--------f~V~~~~~~rI~~V~   82 (87)
T d2nqwa1          37 GDEVDTLSGLFLEIKQELPHVGDTAVYEPFR--------FQVTQMDKRRIIEIK   82 (87)
T ss_dssp             HTTCSBHHHHHHHHHCSCCCTTCEEEETTEE--------EEEEEECSSSEEEEE
T ss_pred             ccceeeHHHHHHHHhCccccCCeEEEECCEE--------EEEEEccCCeEEEEE
Confidence            4578999999999999999999999999999        9999985 5565544

>d2p3ha1 d.145.1.4 (A:5-102) Uncharacterized protein Cgl1194/Cg1349 {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Uncharacterized protein Cgl1194/Cg1349
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=95.81  E-value=0.00084  Score=47.11  Aligned_cols=35  Identities=14%  Similarity=0.126  Sum_probs=29.3

Q ss_pred             hhcCCCCCCCCccccccccccccCCCCccccccCC
Q 017536          291 AMALSPNDDEEDNRSEGSLKFASEGADTARYLSYP  325 (369)
Q Consensus       291 ~~~~~~~~~~~~T~~~~~~~~~~~~~~~g~~~~~~  325 (369)
                      .+.+..++++|+|++|++...++++|+.|+.++++
T Consensus        25 ~l~~~l~~~~~~Tl~G~~~~~lg~iP~~Ge~v~i~   59 (98)
T d2p3ha1          25 AIGYELPEGDYETISGLLFDHANALLKTGDVIEIP   59 (98)
T ss_dssp             HHTSCCCCSSCCBHHHHHHHHHCSCCCTTCEEEEE
T ss_pred             HHCCCCCCCCccCHHHHHHHHHCcCCCCCCEEEEe
Confidence            34455567789999999999999999999998764

>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: FliG
family: FliG
domain: FliG
species: Thermotoga maritima [TaxId: 2336]

Probab=86.65  E-value=0.0079  Score=48.49  Aligned_cols=75  Identities=11%  Similarity=-0.017  Sum_probs=60.4

Q ss_pred             CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHH
Q 017536          183 ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHIT  262 (369)
Q Consensus       183 ~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~  262 (369)
                      .+++.|+.+..++.....       ...+.++|...+.++..+++-.++...|.+.+.+.+||++++++..|.|+..|+.
T Consensus       118 ~~~l~~f~dl~~l~~~~~-------~~~l~~i~~~~~~~a~~~~~~e~~~~~l~~~~~~~~~vv~~e~~~~G~I~~~Die  190 (213)
T d1lkvx_         118 RRRMFVFEDILKLDDRSI-------QLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKDELEYMGPVRLKDVE  190 (213)
T ss_dssp             HHHHCCGGGGGGSCHHHH-------HHHHTTSCHHHHHHHHTTCCHHHHHHHHTTSCHHHHHHHHHHHHSCCCCCHHHHH
T ss_pred             hhhccccccHHHHccccH-------hHHHHHhhhhhheeehhcCCHHHHHHHHHhCCHHHHHHHHHhhhhcCCCcHHHHH
Confidence            445666666665542221       4567788888888999999999999999999999999999999999999999986


Q ss_pred             HH
Q 017536          263 HA  264 (369)
Q Consensus       263 ~~  264 (369)
                      ++
T Consensus       191 ~A  192 (213)
T d1lkvx_         191 EA  192 (213)
T ss_dssp             HH
T ss_pred             HH
Confidence            53