Citrus Sinensis ID: 017537

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
Protein Sequence
MALVIVKVAMMWMILAKTSWILYCLTMNLNSRMIIMRGMTRNIEIHVIRSDNRGKRRLSKRMRNLKWHIECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQERQAQASRLARGPSMNSSSRRAPMDFGPRGLSLGTPIFNIIYYLCLVVLIWWWVQV
Secondary Structure (PSIPRED)
cEEEEEEEEEEEEEEcccHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHccccEEEEEEEccccccHHHHHHHHccccccccccHHHccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcHccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MALVIVKVAMMWMILAKTSWILYCLTMNLNSRMIIMRGMTRNIEIHVIRSDNRGKRRLSKRMRNLKWHIecrgdigrlnapnFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLagelpdfsedneKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLgqyenpdeeDVEALCILMSTIGemidhpkakeHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRrkvegpkkIEEVHRDAAQERQAQASRlargpsmnsssrrapmdfgprglslgtpiFNIIYYLCLVVLIWWWVQV
Flexible Loop (DISEMBL)
MALVIVKVAMMWMILAKTSWILYCLTMNLNSRMIIMRGMTRnieihvirsdnrgkrrlskrmrnlkwhiecrgdigrlnaPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSEDNEKITFKRLLLNKCQEEFErgereqeeankadkegeikqteeereekrikarrrwlgnirligelykkkmlteRIMHECIKKLlgqyenpdEEDVEALCILMSTIGEMIDHPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSielrknkwqqrrkvegpkkieEVHRDAAQERQAqasrlargpsmnsssrrapmdfgpRGLSLGTPIFNIIYYLCLVVLIWWWVQV
Low Complexity Region (SEG)
MALVIVKVAMMWMILAKTSWILYCLTMNLNSRMIIMRGMTRNIEIHVIRSDNRGKRRLSKRMRNLKWHIECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSEDNEKITFKRLLLNKCqeefergereqeeANKADkegeikqteeereekrikarrrWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQERQAQASRLARGPSMNSSSRRAPMDFGPRGLSLGTPIFNIIYYLCLVVLIWWWVQV
Disordered region (IsUnstruct)
**LVIVKVAMMWMILAKTSWILYCLTMNLNSRMIIMRGMTRNIEIHVIRSDN*****LSKRMRNLKWHIECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSEDNEKITFKRLLLNKC************************************ARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDH*********Y**********************************************************************************GLSLGTPIFNIIYYLCLVVLIWWWV**
Disordered Region (DISOPRED)
*ALVIVKVAMMWMILAKT***************************************************ECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGE**********ITFKRLLLNKCQEEFERGEREQ*****************EREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAKEHMDAYFDRMEK******LSSRVRLMLKDSIELRKNKW*****************************************************************CLVVLIWWWVQV
Disordered Region (DISEMBL)
MALVIVKVAMMWMILAKTSWILYCLTMNLNSRMIIMRGMTRNIEIHVIRSDNRGKRRLSKRMRNLKWHIECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSEDNEKITFKRLLLNKCQEE********************************KARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKN*******************************************RAPMDFGPRGLSLGTPIFNIIYYLCLVVLIWWWVQV
Disordered Region (DISPRO)
MALVIVKVAMMWMILAKTSWILYCLTMNLNSRMIIMRGMTRNI**************LSKRMRNLKWHIECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQERQ******************************GTPIFNIIYYLCLVVLIWWWVQV
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALVIVKVAMMWMILAKTSWILYCLTMNLNSRMIIMRGMTRNIEIHVIRSDNRGKRRLSKRMRNLKWHIECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSEDNEKITFKRLLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQERQAQASRLARGPSMNSSSRRAPMDFGPRGLSLGTPIFNIIYYLCLVVLIWWWVQV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	369	2.2.26 [Sep-21-2011]
B9FXV5	1792	Eukaryotic translation in	yes	no	0.728	0.150	0.800	1e-121
G5CEW6	1488	Eukaryotic translation in	N/A	no	0.726	0.180	0.789	1e-115
Q76E23	1727	Eukaryotic translation in	yes	no	0.810	0.173	0.653	1e-105
Q6NZJ6	1600	Eukaryotic translation in	yes	no	0.742	0.171	0.405	1e-53
Q04637	1599	Eukaryotic translation in	yes	no	0.742	0.171	0.408	2e-53
Q80XI3	1579	Eukaryotic translation in	no	no	0.701	0.164	0.413	3e-52
O43432	1585	Eukaryotic translation in	no	no	0.701	0.163	0.410	1e-51
Q6K641	780	Eukaryotic translation in	no	no	0.669	0.316	0.419	1e-47
Q84PB3	793	Eukaryotic translation in	no	no	0.704	0.327	0.404	2e-43
O82233	747	Eukaryotic translation in	no	no	0.704	0.348	0.389	1e-41

>sp|B9FXV5|IF4G_ORYSJ Eukaryotic translation initiation factor 4G OS=Oryza sativa subsp. japonica GN=Os07g0555200 PE=2 SV=2

 Score =  434 bits (1116), Expect = e-121,   Method: Composition-based stats.
 Identities = 217/271 (80%), Positives = 241/271 (88%), Gaps = 2/271 (0%)

Query: 75   IGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELP 134
            + +L   NF+KLFE+VK VNIDN  TL GV+SQIFDKALMEPTFCEMYANF + LAG LP
Sbjct: 1190 LNKLTPQNFEKLFEKVKEVNIDNVATLTGVISQIFDKALMEPTFCEMYANFCFHLAGALP 1249

Query: 135  DFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRW 194
            DFSEDNEKITFKRLLLNKCQEEFERGERE+ EA+K ++EGEIKQT+EEREEKRI+ARRR 
Sbjct: 1250 DFSEDNEKITFKRLLLNKCQEEFERGEREEAEADKTEEEGEIKQTKEEREEKRIRARRRM 1309

Query: 195  LGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAK 254
            LGNIRLIGELYKK+MLTERIMHECIKKLLG Y+NPDEE++EALC LMSTIGEMIDH KAK
Sbjct: 1310 LGNIRLIGELYKKRMLTERIMHECIKKLLGNYQNPDEENIEALCKLMSTIGEMIDHAKAK 1369

Query: 255  EHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQE 314
            EHMDAYFD M KLS + +LSSRVR ML+DSI+LRKNKWQQRRKVEGPKKI+EVHRDAAQE
Sbjct: 1370 EHMDAYFDIMLKLSTSQQLSSRVRFMLRDSIDLRKNKWQQRRKVEGPKKIDEVHRDAAQE 1429

Query: 315  RQAQASRLARGPSMNSSSRR--APMDFGPRG 343
            R AQ+SRLARG  + S  RR  APMD+GPRG
Sbjct: 1430 RHAQSSRLARGSVVGSGPRRGAAPMDYGPRG 1460

Component of the protein complex eIF4F, which is involved in the recognition of the mRNA cap, ATP-dependent unwinding of 5'-terminal secondary structure and recruitment of mRNA to the ribosome.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|G5CEW6|IF4G_WHEAT Eukaryotic translation initiation factor 4G OS=Triticum aestivum PE=1 SV=1

 Score =  416 bits (1070), Expect = e-115,   Method: Composition-based stats.
 Identities = 214/271 (78%), Positives = 239/271 (88%), Gaps = 3/271 (1%)

Query: 75   IGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELP 134
            + +L   NF KLFEQVK VNIDN  TL GV+SQIFDKALMEPTFCEMYANF   LAG LP
Sbjct: 890  LNKLTPQNFDKLFEQVKEVNIDNVSTLTGVISQIFDKALMEPTFCEMYANFCSHLAGALP 949

Query: 135  DFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRW 194
            DFSEDNEKITFKRLLLNKCQEEFERGERE+ EA+K ++EGEIKQT+EEREEKR+KARRR 
Sbjct: 950  DFSEDNEKITFKRLLLNKCQEEFERGEREEAEADKTEEEGEIKQTKEEREEKRVKARRRM 1009

Query: 195  LGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAK 254
            LGNIRLIGELYKK+MLTERIMHECIKKLLG Y+NPDEE++EALC LMSTIGEMIDHPKAK
Sbjct: 1010 LGNIRLIGELYKKRMLTERIMHECIKKLLGNYQNPDEENIEALCKLMSTIGEMIDHPKAK 1069

Query: 255  EHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQE 314
            EHMDAYFDRM  LS +  +SSRVR +L+DSI+LRKNKWQQRRKV+GPKKI+EVHRDAAQE
Sbjct: 1070 EHMDAYFDRMRNLSTSQLISSRVRFLLRDSIDLRKNKWQQRRKVDGPKKIDEVHRDAAQE 1129

Query: 315  RQAQASRLARGPSMNSSSRR-AP-MDFGPRG 343
            R AQ+SR +RGP ++S  RR AP MD+G RG
Sbjct: 1130 RHAQSSR-SRGPVVSSLPRRGAPSMDYGSRG 1159

Component of the protein complex eIF4F, which is involved in the recognition of the mRNA cap, ATP-dependent unwinding of 5'-terminal secondary structure and recruitment of mRNA to the ribosome.

Triticum aestivum (taxid: 4565)

>sp|Q76E23|IF4G_ARATH Eukaryotic translation initiation factor 4G OS=Arabidopsis thaliana GN=EIF4G PE=1 SV=2

 Score =  380 bits (977), Expect = e-105,   Method: Composition-based stats.
 Identities = 204/312 (65%), Positives = 249/312 (79%), Gaps = 13/312 (4%)

Query: 33   MIIMRGMTRNIEIHVIRSDNRGKRRLSKRMRNLKWHIECRGDIGRLNAPNFKKLFEQVKA 92
            M +M    R  ++  I  + + K+R  K + N            +L   NF+KLFEQVK+
Sbjct: 1073 MQVMHKAERKYQVGTIADEEQAKQRQLKSILN------------KLTPQNFEKLFEQVKS 1120

Query: 93   VNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSEDNEKITFKRLLLNK 152
            VNIDNAVTL+GV+SQIFDKALMEPTFCEMYA+F + L+G LPDF+E+ EKITFKRLLLNK
Sbjct: 1121 VNIDNAVTLSGVISQIFDKALMEPTFCEMYADFCFHLSGALPDFNENGEKITFKRLLLNK 1180

Query: 153  CQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTE 212
            CQEEFERGE+E+EEA++  +EG+++QTEEEREEKR++ RRR LGNIRLIGELYKK+MLTE
Sbjct: 1181 CQEEFERGEKEEEEASRVAEEGQVEQTEEEREEKRLQVRRRMLGNIRLIGELYKKRMLTE 1240

Query: 213  RIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAKEHMDAYFDRMEKLSNNMK 272
            +IMH CI+KLLG  ++P EE++EALC LMSTIG MIDH KAK  MD YF++M+ LS   +
Sbjct: 1241 KIMHACIQKLLGYNQDPHEENIEALCKLMSTIGVMIDHNKAKFQMDGYFEKMKMLSCKQE 1300

Query: 273  LSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQERQAQASRLARGPSMNSSS 332
            LSSRVR ML ++I+LRKNKWQ+R KVEGPKKIEEVHRDAAQERQ QA+RL+RGPSMNSS 
Sbjct: 1301 LSSRVRFMLINAIDLRKNKWQERMKVEGPKKIEEVHRDAAQERQTQANRLSRGPSMNSSG 1360

Query: 333  RRAPMDF-GPRG 343
            RR  M+F  PRG
Sbjct: 1361 RRGHMEFSSPRG 1372

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NZJ6|IF4G1_MOUSE Eukaryotic translation initiation factor 4 gamma 1 OS=Mus musculus GN=Eif4g1 PE=1 SV=1

 Score =  211 bits (536), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 118/291 (40%), Positives = 178/291 (61%), Gaps = 17/291 (5%)

Query: 72   RGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFY-FLA 130
            R  + +L    F++L +QV  + ID    L GV+  IF+KA+ EP F   YAN     +A
Sbjct: 769  RSILNKLTPQMFQQLMKQVTQLAIDTEERLKGVIDLIFEKAISEPNFSVAYANMCRCLMA 828

Query: 131  GELPDFSEDNEKITFKRLLLNKCQEEFERG-------EREQEEANKADKEGEIKQTEEER 183
             ++P   +    + F++LLLN+CQ+EFE+        E++Q+E ++A    E  + +EE 
Sbjct: 829  LKVPTTEKPTVTVNFRKLLLNRCQKEFEKDKDDDEVFEKKQKEMDEAATAEERGRLKEEL 888

Query: 184  EEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMST 243
            EE R  ARRR LGNI+ IGEL+K KMLTE IMH+C+ KLL   +N DEE +E LC L++T
Sbjct: 889  EEARDIARRRSLGNIKFIGELFKLKMLTEAIMHDCVVKLL---KNHDEESLECLCRLLTT 945

Query: 244  IGEMIDHPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKK 303
            IG+ +D  KAK  MD YF++MEK+    K SSR+R ML+D ++LR++ W  RR  +GPK 
Sbjct: 946  IGKDLDFAKAKPRMDQYFNQMEKIIKEKKTSSRIRFMLQDVLDLRQSNWVPRRGDQGPKT 1005

Query: 304  IEEVHRDAAQERQAQASRLARGPSMNSSSRRAPMDFGPRG--LSLGTPIFN 352
            I+++H++A  E   +  ++ +  +  S  RR     GP G  ++ G P+ +
Sbjct: 1006 IDQIHKEAEMEEHREHIKVQQLMAKGSDKRRG----GPPGPPINRGLPLVD 1052

Component of the protein complex eIF4F, which is involved in the recognition of the mRNA cap, ATP-dependent unwinding of 5'-terminal secondary structure and recruitment of mRNA to the ribosome.

Mus musculus (taxid: 10090)

>sp|Q04637|IF4G1_HUMAN Eukaryotic translation initiation factor 4 gamma 1 OS=Homo sapiens GN=EIF4G1 PE=1 SV=4

 Score =  210 bits (534), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 119/291 (40%), Positives = 177/291 (60%), Gaps = 17/291 (5%)

Query: 72   RGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFY-FLA 130
            R  + +L    F++L +QV  + ID    L GV+  IF+KA+ EP F   YAN     +A
Sbjct: 765  RSILNKLTPQMFQQLMKQVTQLAIDTEERLKGVIDLIFEKAISEPNFSVAYANMCRCLMA 824

Query: 131  GELPDFSEDNEKITFKRLLLNKCQEEFERG-------EREQEEANKADKEGEIKQTEEER 183
             ++P   +    + F++LLLN+CQ+EFE+        E++Q+E ++A    E  + +EE 
Sbjct: 825  LKVPTTEKPTVTVNFRKLLLNRCQKEFEKDKDDDEVFEKKQKEMDEAATAEERGRLKEEL 884

Query: 184  EEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMST 243
            EE R  ARRR LGNI+ IGEL+K KMLTE IMH+C+ KLL   +N DEE +E LC L++T
Sbjct: 885  EEARDIARRRSLGNIKFIGELFKLKMLTEAIMHDCVVKLL---KNHDEESLECLCRLLTT 941

Query: 244  IGEMIDHPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKK 303
            IG+ +D  KAK  MD YF++MEK+    K SSR+R ML+D ++LR + W  RR  +GPK 
Sbjct: 942  IGKDLDFEKAKPRMDQYFNQMEKIIKEKKTSSRIRFMLQDVLDLRGSNWVPRRGDQGPKT 1001

Query: 304  IEEVHRDAAQERQAQASRLARGPSMNSSSRRAPMDFGPRG--LSLGTPIFN 352
            I+++H++A  E   +  ++ +  +  S  RR     GP G  +S G P+ +
Sbjct: 1002 IDQIHKEAEMEEHREHIKVQQLMAKGSDKRRG----GPPGPPISRGLPLVD 1048

Component of the protein complex eIF4F, which is involved in the recognition of the mRNA cap, ATP-dependent unwinding of 5'-terminal secondary structure and recruitment of mRNA to the ribosome.

Homo sapiens (taxid: 9606)

>sp|Q80XI3|IF4G3_MOUSE Eukaryotic translation initiation factor 4 gamma 3 OS=Mus musculus GN=Eif4g3 PE=1 SV=2

 Score =  206 bits (523), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 113/273 (41%), Positives = 166/273 (60%), Gaps = 14/273 (5%)

Query: 72   RGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAG 131
            R  + +L    F +L +QV A+ +D    L GV+  +F+KA+ EP+F   YAN    L  
Sbjct: 754  RSILNKLTPQMFNQLMKQVSALTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVT 813

Query: 132  -ELPDFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEER------- 183
             ++P   +    + F++LLLN+CQ+EFE+ + + +   K  KE E     EER       
Sbjct: 814  LKVPMADKPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDEL 873

Query: 184  EEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMST 243
            EE + KARRR +GNI+ IGEL+K KMLTE IMH+C+ KLL   +N DEE +E LC L++T
Sbjct: 874  EEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLL---KNHDEESLECLCRLLTT 930

Query: 244  IGEMIDHPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKK 303
            IG+ +D  KAK  MD YF++MEK+    K SSR+R ML+D I+LR   W  RR  +GPK 
Sbjct: 931  IGKDLDFEKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCNWVSRRADQGPKT 990

Query: 304  IEEVHRDAAQERQAQASRLARGPSMNSSSRRAP 336
            IE++H++A  E Q +  ++ +   + +  +R P
Sbjct: 991  IEQIHKEAKIEEQEEQRKVQQ---LMTKEKRRP 1020

Probable component of the protein complex eIF4F, which is involved in the recognition of the mRNA cap, ATP-dependent unwinding of 5'-terminal secondary structure and recruitment of mRNA to the ribosome. Thought to be a functional homolog of EIF4G1.

Mus musculus (taxid: 10090)

>sp|O43432|IF4G3_HUMAN Eukaryotic translation initiation factor 4 gamma 3 OS=Homo sapiens GN=EIF4G3 PE=1 SV=2

 Score =  204 bits (518), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 112/273 (41%), Positives = 165/273 (60%), Gaps = 14/273 (5%)

Query: 72   RGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAG 131
            R  + +L    F +L +QV  + +D    L GV+  +F+KA+ EP+F   YAN    L  
Sbjct: 759  RSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVT 818

Query: 132  -ELPDFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEER------- 183
             ++P   +    + F++LLLN+CQ+EFE+ + + +   K  KE E     EER       
Sbjct: 819  LKVPMADKPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDEL 878

Query: 184  EEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMST 243
            EE + KARRR +GNI+ IGEL+K KMLTE IMH+C+ KLL   +N DEE +E LC L++T
Sbjct: 879  EEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLL---KNHDEESLECLCRLLTT 935

Query: 244  IGEMIDHPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKK 303
            IG+ +D  KAK  MD YF++MEK+    K SSR+R ML+D I+LR   W  RR  +GPK 
Sbjct: 936  IGKDLDFEKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCNWVSRRADQGPKT 995

Query: 304  IEEVHRDAAQERQAQASRLARGPSMNSSSRRAP 336
            IE++H++A  E Q +  ++ +   + +  +R P
Sbjct: 996  IEQIHKEAKIEEQEEQRKVQQ---LMTKEKRRP 1025

Probable component of the protein complex eIF4F, which is involved in the recognition of the mRNA cap, ATP-dependent unwinding of 5'-terminal secondary structure and recruitment of mRNA to the ribosome. Thought to be a functional homolog of EIF4G1.

Homo sapiens (taxid: 9606)

>sp|Q6K641|IF4G2_ORYSJ Eukaryotic translation initiation factor isoform 4G-2 OS=Oryza sativa subsp. japonica GN=Os02g0611500 PE=2 SV=1

 Score =  190 bits (483), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 109/260 (41%), Positives = 162/260 (62%), Gaps = 13/260 (5%)

Query: 58  LSKRMRNLKWHIECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPT 117
           LS + R LK     +G + +L    F  L  Q+    I  A  L  V+S IF+KA++EPT
Sbjct: 201 LSNKERVLKT---VKGILNKLTPEKFDLLKGQLIEAGITTADILKDVISLIFEKAVLEPT 257

Query: 118 FCEMYANFFYFLAGELPDFSED---NEKITFKRLLLNKCQEEFERGEREQEEANKADKEG 174
           FC MYA   + L  +LP F  +    ++ITFKR+LLN CQE FE  +  + E NK     
Sbjct: 258 FCPMYAQLCFDLNEKLPSFPSEEPGGKEITFKRVLLNNCQEAFEGADNLRSEVNKLTG-- 315

Query: 175 EIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYEN--PDEE 232
            + Q  E R+++R+  + R LGNIRL+GEL K+KM+ E+I+H  +++LLG   N  P EE
Sbjct: 316 -LDQEMERRDKERL-VKLRTLGNIRLVGELLKQKMVPEKIVHHIVQELLGSESNRCPAEE 373

Query: 233 DVEALCILMSTIGEMID-HPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNK 291
           +VEA+C   +TIG+ +D +PK++   D YF+R++ L+ N +L+SR+R M +D ++LR N+
Sbjct: 374 NVEAICQFFNTIGKQLDENPKSRRFNDVYFNRLKDLTTNSQLASRLRFMARDVLDLRSNQ 433

Query: 292 WQQRRKVEGPKKIEEVHRDA 311
           W  RR+    KKI E+HR+A
Sbjct: 434 WVPRREEMKAKKISEIHREA 453

Plays a role in the accumulation of a sobemovirus (RYMV) during viral infection.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q84PB3|IF4G1_ORYSJ Eukaryotic translation initiation factor isoform 4G-1 OS=Oryza sativa subsp. japonica GN=Os04g0499300 PE=2 SV=2

 Score =  177 bits (448), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 112/277 (40%), Positives = 164/277 (59%), Gaps = 17/277 (6%)

Query: 43  IEIHVIRSDNRGKRRLSKRMRNLKWHIECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLA 102
           I+  V  S  RG   LS++ R LK     +G + +L    F  L  Q+    I  A  L 
Sbjct: 188 IKAEVPWSARRGN--LSEKDRVLKT---VKGILNKLTPEKFDLLKGQLMESGITTADILK 242

Query: 103 GVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSED---NEKITFKRLLLNKCQEEFER 159
            V+S IF+KA+ EPTFC MYA     L  +LP F  +    ++ITFKR+LLN CQE FE 
Sbjct: 243 DVISLIFEKAVFEPTFCPMYAQLCSDLNEKLPSFPSEEPGGKEITFKRVLLNNCQEAFEG 302

Query: 160 GEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECI 219
            E  + E  K        Q  E R+++RI  + R LGNIRLIGEL K+KM+ E+I+H  +
Sbjct: 303 AESLRAEIAKLTGP---DQEMERRDKERI-VKLRTLGNIRLIGELLKQKMVPEKIVHHIV 358

Query: 220 KKLLGQYEN----PDEEDVEALCILMSTIGEMID-HPKAKEHMDAYFDRMEKLSNNMKLS 274
           ++LLG   +    P+EE+VEA+C   +TIG+ +D +PK++   D YF +M++L+ N++L+
Sbjct: 359 QELLGSGPDKKACPEEENVEAICQFFNTIGKQLDENPKSRRINDTYFIQMKELTTNLQLA 418

Query: 275 SRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDA 311
            R+R M++D ++LR N W  RR+    K I E+H +A
Sbjct: 419 PRLRFMVRDVVDLRSNNWVPRREEIKAKTISEIHDEA 455

Plays a role in the accumulation of a sobemovirus (RYMV) during viral infection.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O82233|IF4G2_ARATH Eukaryotic translation initiation factor isoform 4G-2 OS=Arabidopsis thaliana GN=EIF(ISO)4G2 PE=1 SV=1

 Score =  170 bits (431), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/275 (38%), Positives = 162/275 (58%), Gaps = 15/275 (5%)

Query: 43  IEIHVIRSDNRGKRRLSKRMRNLKWHIECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLA 102
           I+  V  S  RG   LS + R +K     +G + +L    ++ L  Q+    I +A  L 
Sbjct: 155 IKAEVPWSAKRGA--LSDKDRVVK---SVKGILNKLTPEKYELLKGQLIDAGITSADILK 209

Query: 103 GVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSED---NEKITFKRLLLNKCQEEFER 159
            V+  IF+ A+++PTFCEMYA   + + G+LP F  +    ++ITFKR+LLN CQE FE 
Sbjct: 210 EVIQLIFENAILQPTFCEMYALLCFDINGQLPSFPSEEPGGKEITFKRVLLNNCQEAFEG 269

Query: 160 GEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECI 219
             + +EE  +     +    E ER +K   A+ R LGNIRLIGEL K+KM+ E+I+H  +
Sbjct: 270 AGKLKEEIRQMTNPDQ----EMERMDKEKMAKLRTLGNIRLIGELLKQKMVPEKIVHHIV 325

Query: 220 KKLLGQYEN--PDEEDVEALCILMSTIGEMID-HPKAKEHMDAYFDRMEKLSNNMKLSSR 276
           ++LLG      P E DVEALC    TIG+ +D  P+++   D YF R+++L+ + +L  R
Sbjct: 326 QELLGDDTKACPAEGDVEALCQFFITIGKQLDDSPRSRGINDTYFGRLKELARHPQLELR 385

Query: 277 VRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDA 311
           +R M+++ ++LR NKW  RR+    KKI E+H +A
Sbjct: 386 LRFMVQNVVDLRANKWVPRREEVKAKKINEIHSEA 420

Plays a role in the accumulation of some potyvirus during viral infection.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	369
359489318	1935	PREDICTED: eukaryotic translation initia	0.737	0.140	0.864	1e-137
255571077	1753	eukaryotic translation initiation factor	0.804	0.169	0.779	1e-134
224136374	1166	predicted protein [Populus trichocarpa]	0.750	0.237	0.830	1e-134
147832292	1778	hypothetical protein VITISV_043311 [Viti	0.720	0.149	0.864	1e-133
118488070	670	unknown [Populus trichocarpa]	0.750	0.413	0.830	1e-133
309296911	1899	eukaryotic translation initiation factor	0.813	0.157	0.753	1e-132
449495991	1887	PREDICTED: LOW QUALITY PROTEIN: eukaryot	0.745	0.145	0.815	1e-131
449442451	1887	PREDICTED: eukaryotic translation initia	0.745	0.145	0.815	1e-131
356527260	1847	PREDICTED: eukaryotic translation initia	0.753	0.150	0.796	1e-130
224067564	797	predicted protein [Populus trichocarpa]	0.750	0.347	0.833	1e-130

>gi|359489318|ref|XP_002269466.2| PREDICTED: eukaryotic translation initiation factor 4G-like [Vitis vinifera]

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 237/274 (86%), Positives = 255/274 (93%), Gaps = 2/274 (0%)

Query: 75   IGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELP 134
            + +L   NF+KLFEQVKAVNIDNA TL  V+SQIFDKALMEPTFCEMYANF + LA ELP
Sbjct: 1289 LNKLTPQNFEKLFEQVKAVNIDNADTLTRVISQIFDKALMEPTFCEMYANFCFHLARELP 1348

Query: 135  DFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRW 194
            DFSEDNEKITFKRLLLNKCQEEFERGEREQEEAN+AD+EGEIKQ+EEEREEKRIKARRR 
Sbjct: 1349 DFSEDNEKITFKRLLLNKCQEEFERGEREQEEANRADEEGEIKQSEEEREEKRIKARRRM 1408

Query: 195  LGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAK 254
            LGNIRLIGELYKK+MLTERIMHECIKKLLGQY+NPDEED+E+LC LMSTIGEMIDHPKAK
Sbjct: 1409 LGNIRLIGELYKKRMLTERIMHECIKKLLGQYQNPDEEDIESLCKLMSTIGEMIDHPKAK 1468

Query: 255  EHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQE 314
            EHMD YFDRM KLSNNMKLSSRVR MLKD+I+LRKNKWQQRRKVEGPKKIEEVHRDAAQE
Sbjct: 1469 EHMDVYFDRMAKLSNNMKLSSRVRFMLKDAIDLRKNKWQQRRKVEGPKKIEEVHRDAAQE 1528

Query: 315  RQAQASRLARGPSMNSSSRRA--PMDFGPRGLSL 346
            RQAQASRL+RGPSMNSS+RR   PMDFGPRG ++
Sbjct: 1529 RQAQASRLSRGPSMNSSTRRGAPPMDFGPRGSTM 1562

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571077|ref|XP_002526489.1| eukaryotic translation initiation factor 4g, putative [Ricinus communis] gi|223534164|gb|EEF35880.1| eukaryotic translation initiation factor 4g, putative [Ricinus communis]

 Score =  486 bits (1250), Expect = e-134,   Method: Composition-based stats.
 Identities = 241/309 (77%), Positives = 262/309 (84%), Gaps = 12/309 (3%)

Query: 35   IMRGMTRNIEIHVIRSDNRGKRRLSKRMRNLKWHIECRGDIGRLNAPNFKKLFEQVKAVN 94
            +M    R  E+  +  +   K+R  K + N            +L   NF+KLFEQVKAVN
Sbjct: 1092 MMHRAERKYEVGKVTDEEESKQRQLKAILN------------KLTPQNFEKLFEQVKAVN 1139

Query: 95   IDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSEDNEKITFKRLLLNKCQ 154
            IDNAVTL GV+SQIFDKALMEPTFCEMYANF + LAGELPDF+EDNEKITFKRLLLNKCQ
Sbjct: 1140 IDNAVTLTGVISQIFDKALMEPTFCEMYANFCHHLAGELPDFTEDNEKITFKRLLLNKCQ 1199

Query: 155  EEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERI 214
            EEFERGEREQEEANKAD+EGE KQ+EEEREEKR KARRR LGNIRLIGELYKKKMLTERI
Sbjct: 1200 EEFERGEREQEEANKADEEGETKQSEEEREEKRTKARRRMLGNIRLIGELYKKKMLTERI 1259

Query: 215  MHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAKEHMDAYFDRMEKLSNNMKLS 274
            MHECIKKLLGQY+NPDEEDVEALC LMSTIGEMIDHPKAKEHMDAYFDRM KLSNNMKLS
Sbjct: 1260 MHECIKKLLGQYQNPDEEDVEALCKLMSTIGEMIDHPKAKEHMDAYFDRMAKLSNNMKLS 1319

Query: 275  SRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQERQAQASRLARGPSMNSSSRR 334
            SRVR MLKD+I+LR+NKWQQRRKVEGPKKI+EVHRDAAQER  Q+SRL+R P +N S RR
Sbjct: 1320 SRVRFMLKDAIDLRRNKWQQRRKVEGPKKIDEVHRDAAQERHHQSSRLSRNPVINPSPRR 1379

Query: 335  APMDFGPRG 343
            APMDFGPRG
Sbjct: 1380 APMDFGPRG 1388

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136374|ref|XP_002326844.1| predicted protein [Populus trichocarpa] gi|222835159|gb|EEE73594.1| predicted protein [Populus trichocarpa]

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 230/277 (83%), Positives = 252/277 (90%)

Query: 70  ECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFL 129
           + +G + +L   NF+KLFEQVKAVNIDNAVTL GV+SQIFDKALMEPTFCEMYANF + L
Sbjct: 519 QLKGILNKLTPQNFEKLFEQVKAVNIDNAVTLNGVISQIFDKALMEPTFCEMYANFCFHL 578

Query: 130 AGELPDFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIK 189
           A ELP+  ED+EK+TFKRLLLNKCQEEFERGEREQEEANKAD+EGEIK+++EEREE+RIK
Sbjct: 579 AAELPELIEDDEKVTFKRLLLNKCQEEFERGEREQEEANKADEEGEIKKSDEEREEQRIK 638

Query: 190 ARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMID 249
           ARRR LGNIRLIGELYKK+MLTERIMHECIKKLLGQY+NPDEEDVE+LC LMSTIGEMID
Sbjct: 639 ARRRMLGNIRLIGELYKKRMLTERIMHECIKKLLGQYQNPDEEDVESLCKLMSTIGEMID 698

Query: 250 HPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHR 309
           HPKAK HMDAYFD M KLSNNMKLSSRVR MLKD+I+LRKNKWQQRRKVEGPKKIEEVHR
Sbjct: 699 HPKAKVHMDAYFDMMAKLSNNMKLSSRVRFMLKDAIDLRKNKWQQRRKVEGPKKIEEVHR 758

Query: 310 DAAQERQAQASRLARGPSMNSSSRRAPMDFGPRGLSL 346
           DAAQERQ Q SRLAR P MNSS RR PMDFGPRG ++
Sbjct: 759 DAAQERQLQTSRLARNPGMNSSPRRGPMDFGPRGSTM 795

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147832292|emb|CAN77792.1| hypothetical protein VITISV_043311 [Vitis vinifera]

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 230/266 (86%), Positives = 247/266 (92%)

Query: 75   IGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELP 134
            + +L   NF+KLFEQVKAVNIDNA TL  V+SQIFDKALMEPTFCEMYANF + LA ELP
Sbjct: 1289 LNKLTPQNFEKLFEQVKAVNIDNADTLTRVISQIFDKALMEPTFCEMYANFCFHLARELP 1348

Query: 135  DFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRW 194
            DFSEDNEKITFKRLLLNKCQEEFERGEREQEEAN+AD+EGEIKQ+EEEREEKRIKARRR 
Sbjct: 1349 DFSEDNEKITFKRLLLNKCQEEFERGEREQEEANRADEEGEIKQSEEEREEKRIKARRRM 1408

Query: 195  LGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAK 254
            LGNIRLIGELYKK+MLTERIMHECIKKLLGQY+NPDEED+E+LC LMSTIGEMIDHPKAK
Sbjct: 1409 LGNIRLIGELYKKRMLTERIMHECIKKLLGQYQNPDEEDIESLCKLMSTIGEMIDHPKAK 1468

Query: 255  EHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQE 314
            EHMD YFDRM KLSNNMKLSSRVR MLKD+I+LRKNKWQQRRKVEGPKKIEEVHRDAAQE
Sbjct: 1469 EHMDVYFDRMAKLSNNMKLSSRVRFMLKDAIDLRKNKWQQRRKVEGPKKIEEVHRDAAQE 1528

Query: 315  RQAQASRLARGPSMNSSSRRAPMDFG 340
            RQAQASRL+RGPSMNSS+RR    +G
Sbjct: 1529 RQAQASRLSRGPSMNSSTRRGAPSYG 1554

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488070|gb|ABK95855.1| unknown [Populus trichocarpa]

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 230/277 (83%), Positives = 252/277 (90%)

Query: 70  ECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFL 129
           + +G + +L   NF+KLFEQVKAVNIDNAVTL GV+SQIFDKALMEPTFCEMYANF + L
Sbjct: 23  QLKGILNKLTPQNFEKLFEQVKAVNIDNAVTLNGVISQIFDKALMEPTFCEMYANFCFHL 82

Query: 130 AGELPDFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIK 189
           A ELP+  ED+EK+TFKRLLLNKCQEEFERGEREQEEANKAD+EGEIK+++EEREE+RIK
Sbjct: 83  AAELPELIEDDEKVTFKRLLLNKCQEEFERGEREQEEANKADEEGEIKKSDEEREEQRIK 142

Query: 190 ARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMID 249
           ARRR LGNIRLIGELYKK+MLTERIMHECIKKLLGQY+NPDEEDVE+LC LMSTIGEMID
Sbjct: 143 ARRRMLGNIRLIGELYKKRMLTERIMHECIKKLLGQYQNPDEEDVESLCKLMSTIGEMID 202

Query: 250 HPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHR 309
           HPKAK HMDAYFD M KLSNNMKLSSRVR MLKD+I+LRKNKWQQRRKVEGPKKIEEVHR
Sbjct: 203 HPKAKVHMDAYFDMMAKLSNNMKLSSRVRFMLKDAIDLRKNKWQQRRKVEGPKKIEEVHR 262

Query: 310 DAAQERQAQASRLARGPSMNSSSRRAPMDFGPRGLSL 346
           DAAQERQ Q SRLAR P MNSS RR PMDFGPRG ++
Sbjct: 263 DAAQERQLQTSRLARNPGMNSSPRRGPMDFGPRGSTM 299

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|309296911|gb|ADO64263.1| eukaryotic translation initiation factor 4G [Carica papaya]

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 235/312 (75%), Positives = 260/312 (83%), Gaps = 12/312 (3%)

Query: 35   IMRGMTRNIEIHVIRSDNRGKRRLSKRMRNLKWHIECRGDIGRLNAPNFKKLFEQVKAVN 94
            +M    +  E+  +  + + K+R  K + N            +L   NF KLFEQVKAVN
Sbjct: 1230 MMHKAEKKYEVGKVTDEEQTKQRQLKAILN------------KLTPQNFDKLFEQVKAVN 1277

Query: 95   IDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSEDNEKITFKRLLLNKCQ 154
            IDN VTL GV+SQIFDKALMEPTFCEMYANF Y LA  LPDFSE+NEKITFKRLLLNKCQ
Sbjct: 1278 IDNTVTLTGVISQIFDKALMEPTFCEMYANFCYHLAAVLPDFSEENEKITFKRLLLNKCQ 1337

Query: 155  EEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERI 214
            EEFERGEREQEEANK ++EGE+KQ+EEEREEKRIKARRR LGNIRLIGELYKKKMLTERI
Sbjct: 1338 EEFERGEREQEEANKVEEEGEVKQSEEEREEKRIKARRRMLGNIRLIGELYKKKMLTERI 1397

Query: 215  MHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAKEHMDAYFDRMEKLSNNMKLS 274
            MH CI KLLGQY+NPDEED+EALC LMSTIGE+IDHP AKEHMDAYFDRM KLSNNMKLS
Sbjct: 1398 MHSCINKLLGQYQNPDEEDIEALCKLMSTIGEIIDHPLAKEHMDAYFDRMTKLSNNMKLS 1457

Query: 275  SRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQERQAQASRLARGPSMNSSSRR 334
            SRVR MLKD+I+LRKNKWQQRRKVEGPKKIEEVHRDAAQERQ QASRL RGP +N S+RR
Sbjct: 1458 SRVRFMLKDAIDLRKNKWQQRRKVEGPKKIEEVHRDAAQERQTQASRLTRGPGINPSARR 1517

Query: 335  APMDFGPRGLSL 346
            APM+F PRG ++
Sbjct: 1518 APMEFSPRGSTM 1529

Source: Carica papaya

Species: Carica papaya

Genus: Carica

Family: Caricaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449495991|ref|XP_004160005.1| PREDICTED: LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4G-like [Cucumis sativus]

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 226/277 (81%), Positives = 250/277 (90%), Gaps = 2/277 (0%)

Query: 75   IGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELP 134
            + +L   NF+KLFEQVKAVNIDN  TL GV+SQIFDKALMEPTFCEMYANF + LAGELP
Sbjct: 1245 LNKLTPQNFEKLFEQVKAVNIDNGRTLTGVISQIFDKALMEPTFCEMYANFCFHLAGELP 1304

Query: 135  DFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRW 194
            D SEDNEKITFKRLLLNKCQEEFERGEREQEEANK ++EGE+KQ+EEEREEKR+KARRR 
Sbjct: 1305 DLSEDNEKITFKRLLLNKCQEEFERGEREQEEANKVEEEGEVKQSEEEREEKRVKARRRM 1364

Query: 195  LGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAK 254
            LGNIRLIGELYKKKMLTERIMHECIKKLLG+Y+NPDEEDVEALC LMSTIGEMIDHP+AK
Sbjct: 1365 LGNIRLIGELYKKKMLTERIMHECIKKLLGEYQNPDEEDVEALCKLMSTIGEMIDHPRAK 1424

Query: 255  EHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQE 314
            ++MD+YF+ M  LSNNMKLSSRVR MLKD+I+LRKNKWQQRRKVEGPKKIEEVHRDAAQE
Sbjct: 1425 DYMDSYFEIMTMLSNNMKLSSRVRFMLKDAIDLRKNKWQQRRKVEGPKKIEEVHRDAAQE 1484

Query: 315  RQAQASRLARGPSMNSSSRRA--PMDFGPRGLSLGTP 349
            RQAQ  R  RGPS+NSS+RR   PMD+GPRG  + +P
Sbjct: 1485 RQAQTGRFGRGPSINSSARRGGPPMDYGPRGSVVSSP 1521

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442451|ref|XP_004138995.1| PREDICTED: eukaryotic translation initiation factor 4G-like [Cucumis sativus]

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 226/277 (81%), Positives = 250/277 (90%), Gaps = 2/277 (0%)

Query: 75   IGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELP 134
            + +L   NF+KLFEQVKAVNIDN  TL GV+SQIFDKALMEPTFCEMYANF + LAGELP
Sbjct: 1245 LNKLTPQNFEKLFEQVKAVNIDNGRTLTGVISQIFDKALMEPTFCEMYANFCFHLAGELP 1304

Query: 135  DFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRW 194
            D SEDNEKITFKRLLLNKCQEEFERGEREQEEANK ++EGE+KQ+EEEREEKR+KARRR 
Sbjct: 1305 DLSEDNEKITFKRLLLNKCQEEFERGEREQEEANKVEEEGEVKQSEEEREEKRVKARRRM 1364

Query: 195  LGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAK 254
            LGNIRLIGELYKKKMLTERIMHECIKKLLG+Y+NPDEEDVEALC LMSTIGEMIDHP+AK
Sbjct: 1365 LGNIRLIGELYKKKMLTERIMHECIKKLLGEYQNPDEEDVEALCKLMSTIGEMIDHPRAK 1424

Query: 255  EHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQE 314
            ++MD+YF+ M  LSNNMKLSSRVR MLKD+I+LRKNKWQQRRKVEGPKKIEEVHRDAAQE
Sbjct: 1425 DYMDSYFEIMTMLSNNMKLSSRVRFMLKDAIDLRKNKWQQRRKVEGPKKIEEVHRDAAQE 1484

Query: 315  RQAQASRLARGPSMNSSSRRA--PMDFGPRGLSLGTP 349
            RQAQ  R  RGPS+NSS+RR   PMD+GPRG  + +P
Sbjct: 1485 RQAQTGRFGRGPSINSSARRGGPPMDYGPRGSVVSSP 1521

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527260|ref|XP_003532230.1| PREDICTED: eukaryotic translation initiation factor 4G-like [Glycine max]

 Score =  472 bits (1214), Expect = e-130,   Method: Composition-based stats.
 Identities = 223/280 (79%), Positives = 246/280 (87%), Gaps = 2/280 (0%)

Query: 70   ECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFL 129
            + +G + +L   NF+KLF+QV+AVNIDN VTL GV+SQIF+KALMEPTFCEMYANF + L
Sbjct: 1224 QLKGILNKLTPQNFEKLFDQVRAVNIDNVVTLNGVISQIFEKALMEPTFCEMYANFCFHL 1283

Query: 130  AGELPDFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIK 189
            A  LPD S+DNEKITFKRLLLNKCQEEFERGEREQEEANKAD EGE+K + EEREEKR K
Sbjct: 1284 AAVLPDLSQDNEKITFKRLLLNKCQEEFERGEREQEEANKAD-EGEVKLSNEEREEKRTK 1342

Query: 190  ARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMID 249
            ARRR LGNIRLIGELYKKKMLTERIMHECIKKLLGQY++PDEED+EALC LMSTIGEMID
Sbjct: 1343 ARRRMLGNIRLIGELYKKKMLTERIMHECIKKLLGQYQDPDEEDIEALCKLMSTIGEMID 1402

Query: 250  HPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHR 309
            HPKAKEHMDAYF+ M  LSNNM LSSR+R MLKD I+LRKNKWQQRRKVEGPKKIEEVHR
Sbjct: 1403 HPKAKEHMDAYFEMMRSLSNNMNLSSRLRFMLKDVIDLRKNKWQQRRKVEGPKKIEEVHR 1462

Query: 310  DAAQERQAQASRLARGPSMNSSSRRAPMDFGPRGLSLGTP 349
            DA+QER AQASRL RGP  N+  RR PMDFGPRG S+ +P
Sbjct: 1463 DASQERLAQASRLGRGPG-NNPPRRIPMDFGPRGSSMLSP 1501

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067564|ref|XP_002302506.1| predicted protein [Populus trichocarpa] gi|222844232|gb|EEE81779.1| predicted protein [Populus trichocarpa]

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 231/277 (83%), Positives = 251/277 (90%)

Query: 70  ECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFL 129
           + +G + +L   NF+KLFEQVKAVNIDN VTL GV+SQIFDKALMEPTFCEMYANF + L
Sbjct: 306 QLKGILNKLTPQNFEKLFEQVKAVNIDNVVTLNGVISQIFDKALMEPTFCEMYANFCFHL 365

Query: 130 AGELPDFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIK 189
           A ELP+ +EDNEK+TFKR+LLNKCQEEFERGEREQEEANKAD+EGEIKQ+EEEREEKRIK
Sbjct: 366 AAELPELTEDNEKVTFKRILLNKCQEEFERGEREQEEANKADEEGEIKQSEEEREEKRIK 425

Query: 190 ARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMID 249
           ARRR LGNIRLIGELYKK+MLTERIMHECIKKLLGQY+NPDEED+EALC LMSTIGEMID
Sbjct: 426 ARRRMLGNIRLIGELYKKRMLTERIMHECIKKLLGQYQNPDEEDLEALCKLMSTIGEMID 485

Query: 250 HPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHR 309
           HPKAKEHMD YFD M KLSNNMKLSSRVR MLKDSI+LRKNKWQQRRKVEGPKKIEEVHR
Sbjct: 486 HPKAKEHMDVYFDMMAKLSNNMKLSSRVRFMLKDSIDLRKNKWQQRRKVEGPKKIEEVHR 545

Query: 310 DAAQERQAQASRLARGPSMNSSSRRAPMDFGPRGLSL 346
           DAAQERQ Q SRLAR P +N S RR PMDFGPRG ++
Sbjct: 546 DAAQERQLQTSRLARNPGINPSPRRGPMDFGPRGSTM 582

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	369
TAIR|locus:2081927	1727	EIF4G "AT3G60240" [Arabidopsis	0.810	0.173	0.570	2.9e-83
UNIPROTKB|E1BSG5	1431	Gga.53666 "Uncharacterized pro	0.371	0.095	0.485	6.7e-42
UNIPROTKB|F1MX04	1627	EIF4G1 "Uncharacterized protei	0.403	0.091	0.462	2.5e-41
ZFIN|ZDB-GENE-070112-702	1592	zgc:158450 "zgc:158450" [Danio	0.425	0.098	0.457	3.9e-41
UNIPROTKB|J9P357	1255	EIF4G1 "Uncharacterized protei	0.403	0.118	0.455	4e-41
UNIPROTKB|D4A554	1581	Eif4g3 "Protein Eif4g3" [Rattu	0.365	0.085	0.485	5e-41
UNIPROTKB|I3LMH4	1603	EIF4G1 "Uncharacterized protei	0.403	0.092	0.455	5e-41
UNIPROTKB|F1PNF3	1421	EIF4G1 "Uncharacterized protei	0.403	0.104	0.455	5.8e-41
ZFIN|ZDB-GENE-090312-49	1700	eif4g3b "eukaryotic translatio	0.376	0.081	0.475	7.6e-41
UNIPROTKB|G5E9S1	1404	EIF4G1 "Eukaryotic translation	0.403	0.106	0.455	9.1e-41

TAIR|locus:2081927 EIF4G "AT3G60240" [Arabidopsis thaliana (taxid:3702)]

 Score = 846 (302.9 bits), Expect = 2.9e-83, P = 2.9e-83
 Identities = 178/312 (57%), Positives = 215/312 (68%)

Query:    33 MIIMRGMTRNIEIHVIRSDNRGKRRLSKRMRNLKWHIECRGDIGRLNAPNFKKLFEQVKA 92
             M +M    R  ++  I  + + K+R  K + N            +L   NF+KLFEQVK+
Sbjct:  1073 MQVMHKAERKYQVGTIADEEQAKQRQLKSILN------------KLTPQNFEKLFEQVKS 1120

Query:    93 VNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSEDNEKITFKRLLLNK 152
             VNIDNAVTL+GV+SQIFDKALMEPTFCEMYA+F + L+G LPDF+E+ EKITFKRLLLNK
Sbjct:  1121 VNIDNAVTLSGVISQIFDKALMEPTFCEMYADFCFHLSGALPDFNENGEKITFKRLLLNK 1180

Query:   153 CXXXXXXXXXXXXXANKADXXXXXXXXXXXXXXXXXXXXXXWLGNIRLIGELYKKKMLTE 212
             C             A++                         LGNIRLIGELYKK+MLTE
Sbjct:  1181 CQEEFERGEKEEEEASRVAEEGQVEQTEEEREEKRLQVRRRMLGNIRLIGELYKKRMLTE 1240

Query:   213 RIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAKEHMDAYFDRMEKLSNNMK 272
             +IMH CI+KLLG  ++P EE++EALC LMSTIG MIDH KAK  MD YF++M+ LS   +
Sbjct:  1241 KIMHACIQKLLGYNQDPHEENIEALCKLMSTIGVMIDHNKAKFQMDGYFEKMKMLSCKQE 1300

Query:   273 LSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQERQAQASRLARGPSMNSSS 332
             LSSRVR ML ++I+LRKNKWQ+R KVEGPKKIEEVHRDAAQERQ QA+RL+RGPSMNSS 
Sbjct:  1301 LSSRVRFMLINAIDLRKNKWQERMKVEGPKKIEEVHRDAAQERQTQANRLSRGPSMNSSG 1360

Query:   333 RRAPMDFG-PRG 343
             RR  M+F  PRG
Sbjct:  1361 RRGHMEFSSPRG 1372

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

GO:0009615 "response to virus" evidence=IMP

UNIPROTKB|E1BSG5 Gga.53666 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 349 (127.9 bits), Expect = 6.7e-42, Sum P(2) = 6.7e-42
 Identities = 69/142 (48%), Positives = 97/142 (68%)

Query:   195 LGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAK 254
             LGNI+ IGEL+K KMLTE IMH+C+ KLL   +N DEE +E LC L++TIG+ +D  KAK
Sbjct:   826 LGNIKFIGELFKLKMLTEAIMHDCVVKLL---KNHDEESLECLCRLLTTIGKDLDFEKAK 882

Query:   255 EHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQE 314
               MD YF++MEK+    K SSR+R ML+D I+LR+N W  RR  +GPK I+++H++A  E
Sbjct:   883 PRMDQYFNQMEKIIKEKKTSSRIRFMLQDVIDLRRNSWVPRRGDQGPKTIDQIHKEAEME 942

Query:   315 RQAQASRLARGPSMNSSSRRAP 336
                +  ++ +   M+   RR P
Sbjct:   943 EHREHIKVQQ--LMSKDKRRGP 962

GO:0003677 "DNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1MX04 EIF4G1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 352 (129.0 bits), Expect = 2.5e-41, Sum P(2) = 2.5e-41
 Identities = 73/158 (46%), Positives = 104/158 (65%)

Query:   195 LGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAK 254
             LGNI+ IGEL+K KMLTE IMH+C+ KLL   +N DEE +E LC L++TIG+ +D  KAK
Sbjct:   923 LGNIKFIGELFKLKMLTEAIMHDCVVKLL---KNHDEESLECLCRLLTTIGKDLDFEKAK 979

Query:   255 EHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQE 314
               MD YF++MEK+    K SSR+R ML+D ++LRK+ W  RR  +GPK I+++H++A  E
Sbjct:   980 PRMDQYFNQMEKIIKEKKTSSRIRFMLQDVLDLRKSNWVPRRGDQGPKTIDQIHKEAEME 1039

Query:   315 RQAQASRLARGPSMNSSSRRAPMDFGPRG--LSLGTPI 350
                +  ++ +  +  S  RR     GP G  +S G P+
Sbjct:  1040 EHREHIKVQQLMAKGSDKRRG----GPPGPPISRGLPL 1073

GO:0005737 "cytoplasm" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

ZFIN|ZDB-GENE-070112-702 zgc:158450 "zgc:158450" [Danio rerio (taxid:7955)]

 Score = 345 (126.5 bits), Expect = 3.9e-41, Sum P(2) = 3.9e-41
 Identities = 76/166 (45%), Positives = 102/166 (61%)

Query:   195 LGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAK 254
             LGNI+ IGEL+K KMLTE IMH+CI KLL   +N DE+ +E LC L+STIG+ +D  KAK
Sbjct:   871 LGNIKFIGELFKLKMLTEPIMHDCIVKLL---KNHDEDSLECLCRLLSTIGKDLDFEKAK 927

Query:   255 EHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQE 314
               MD YF +MEK+    K SSR+R ML+D ++LRKN W  RR  +GPK I+++H++A  E
Sbjct:   928 PRMDQYFHQMEKIIKEKKTSSRIRFMLQDVLDLRKNNWVPRRGDQGPKTIDQIHKEAELE 987

Query:   315 R-----QAQASRLAR-GPSMNSSSRRAPMDFGPRGLSLGTPIFNII 354
                   + Q   L++   S     R  P   G RG       +NI+
Sbjct:   988 EHREQIKVQQQLLSKKDSSQGRGGRGGPHSSGGRGSQTQDEGWNIV 1033

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|J9P357 EIF4G1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 347 (127.2 bits), Expect = 4.0e-41, Sum P(2) = 4.0e-41
 Identities = 72/158 (45%), Positives = 104/158 (65%)

Query:   195 LGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAK 254
             LGNI+ IGEL+K KMLTE IMH+C+ KLL   +N DEE +E LC L++TIG+ +D  KAK
Sbjct:   915 LGNIKFIGELFKLKMLTEAIMHDCVVKLL---KNHDEESLECLCRLLTTIGKDLDFEKAK 971

Query:   255 EHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQE 314
               MD YF++MEK+    K SSR+R ML+D ++LR++ W  RR  +GPK I+++H++A  E
Sbjct:   972 PRMDQYFNQMEKIIKEKKTSSRIRFMLQDVLDLRRSNWVPRRGDQGPKTIDQIHKEAEME 1031

Query:   315 RQAQASRLARGPSMNSSSRRAPMDFGPRG--LSLGTPI 350
                +  ++ +  +  S  RR     GP G  +S G P+
Sbjct:  1032 EHWEHVKVQQLMAKGSDKRRG----GPPGPPISRGLPL 1065

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|D4A554 Eif4g3 "Protein Eif4g3" [Rattus norvegicus (taxid:10116)]

 Score = 335 (123.0 bits), Expect = 5.0e-41, Sum P(3) = 5.0e-41
 Identities = 68/140 (48%), Positives = 94/140 (67%)

Query:   195 LGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAK 254
             +GNI+ IGEL+K KMLTE IMH+C+ KLL   +N DEE +E LC L++TIG+ +D  KAK
Sbjct:   922 IGNIKFIGELFKLKMLTEAIMHDCVVKLL---KNHDEESLECLCRLLTTIGKDLDFEKAK 978

Query:   255 EHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQE 314
               MD YF++MEK+    K SSR+R ML+D I+LR   W  RR  +GPK IE++H++A  E
Sbjct:   979 PRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCNWVSRRADQGPKTIEQIHKEAKIE 1038

Query:   315 RQAQASRLARGPSMNSSSRR 334
              Q +  ++ +   M    RR
Sbjct:  1039 EQEEQRKVQQ--LMTKEKRR 1056

GO:0003677 "DNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

UNIPROTKB|I3LMH4 EIF4G1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 349 (127.9 bits), Expect = 5.0e-41, Sum P(2) = 5.0e-41
 Identities = 72/158 (45%), Positives = 104/158 (65%)

Query:   195 LGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAK 254
             LGNI+ IGEL+K KMLTE IMH+C+ KLL   +N DEE +E LC L++TIG+ +D  KAK
Sbjct:   899 LGNIKFIGELFKLKMLTEAIMHDCVVKLL---KNHDEESLECLCRLLTTIGKDLDFEKAK 955

Query:   255 EHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQE 314
               MD YF++MEK+    K SSR+R ML+D ++LR++ W  RR  +GPK I+++H++A  E
Sbjct:   956 PRMDQYFNQMEKIIKEKKTSSRIRFMLQDVLDLRRSNWVPRRGDQGPKTIDQIHKEAEME 1015

Query:   315 RQAQASRLARGPSMNSSSRRAPMDFGPRG--LSLGTPI 350
                +  ++ +  +  S  RR     GP G  +S G P+
Sbjct:  1016 EHREHIKVQQLMAKGSDKRRG----GPPGPPISRGLPL 1049

GO:0005737 "cytoplasm" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|F1PNF3 EIF4G1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 347 (127.2 bits), Expect = 5.8e-41, Sum P(2) = 5.8e-41
 Identities = 72/158 (45%), Positives = 104/158 (65%)

Query:   195 LGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAK 254
             LGNI+ IGEL+K KMLTE IMH+C+ KLL   +N DEE +E LC L++TIG+ +D  KAK
Sbjct:   723 LGNIKFIGELFKLKMLTEAIMHDCVVKLL---KNHDEESLECLCRLLTTIGKDLDFEKAK 779

Query:   255 EHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQE 314
               MD YF++MEK+    K SSR+R ML+D ++LR++ W  RR  +GPK I+++H++A  E
Sbjct:   780 PRMDQYFNQMEKIIKEKKTSSRIRFMLQDVLDLRRSNWVPRRGDQGPKTIDQIHKEAEME 839

Query:   315 RQAQASRLARGPSMNSSSRRAPMDFGPRG--LSLGTPI 350
                +  ++ +  +  S  RR     GP G  +S G P+
Sbjct:   840 EHWEHVKVQQLMAKGSDKRRG----GPPGPPISRGLPL 873

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

ZFIN|ZDB-GENE-090312-49 eif4g3b "eukaryotic translation initiation factor 4 gamma, 3b" [Danio rerio (taxid:7955)]

 Score = 345 (126.5 bits), Expect = 7.6e-41, Sum P(2) = 7.6e-41
 Identities = 68/143 (47%), Positives = 97/143 (67%)

Query:   195 LGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAK 254
             +GNI+ IGEL+K +MLTE IMH+C+ KLL   +N DEE +E LC L++TIG+ +D  KAK
Sbjct:  1005 IGNIKFIGELFKLRMLTEAIMHDCVVKLL---KNHDEESLECLCRLLTTIGKDLDFEKAK 1061

Query:   255 EHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQE 314
               MD YF++MEK+    K SSR+R ML+D I+LR + W  RR  +GPK IE++H+DA  E
Sbjct:  1062 PRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLHNWVSRRADQGPKTIEQIHKDAKLE 1121

Query:   315 RQAQASRLARGPSMNSSSRRAPM 337
              Q +  R      ++  ++R P+
Sbjct:  1122 EQEE-QRKVHQQLLSKDNKRRPV 1143

GO:0003723 "RNA binding" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|G5E9S1 EIF4G1 "Eukaryotic translation initiation factor 4 gamma, 1, isoform CRA_a" [Homo sapiens (taxid:9606)]

 Score = 345 (126.5 bits), Expect = 9.1e-41, Sum P(2) = 9.1e-41
 Identities = 72/158 (45%), Positives = 103/158 (65%)

Query:   195 LGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAK 254
             LGNI+ IGEL+K KMLTE IMH+C+ KLL   +N DEE +E LC L++TIG+ +D  KAK
Sbjct:   701 LGNIKFIGELFKLKMLTEAIMHDCVVKLL---KNHDEESLECLCRLLTTIGKDLDFEKAK 757

Query:   255 EHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQE 314
               MD YF++MEK+    K SSR+R ML+D ++LR + W  RR  +GPK I+++H++A  E
Sbjct:   758 PRMDQYFNQMEKIIKEKKTSSRIRFMLQDVLDLRGSNWVPRRGDQGPKTIDQIHKEAEME 817

Query:   315 RQAQASRLARGPSMNSSSRRAPMDFGPRG--LSLGTPI 350
                +  ++ +  +  S  RR     GP G  +S G P+
Sbjct:   818 EHREHIKVQQLMAKGSDKRRG----GPPGPPISRGLPL 851

GO:0003677 "DNA binding" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B9FXV5	IF4G_ORYSJ	No assigned EC number	0.8007	0.7289	0.1501	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	369
pfam02854	198	pfam02854, MIF4G, MIF4G domain	2e-39
smart00543	200	smart00543, MIF4G, Middle domain of eukaryotic ini	2e-36

>gnl|CDD|217253 pfam02854, MIF4G, MIF4G domain

 Score =  138 bits (350), Expect = 2e-39
 Identities = 80/226 (35%), Positives = 125/226 (55%), Gaps = 36/226 (15%)

Query: 71  CRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLA 130
            +G + +L+  NF+K+ +++  +N+ +   L  ++  IF+KA+ EP F   YA     L 
Sbjct: 4   VKGLLNKLSPSNFEKIIDELLKLNMSDKNLLKYILELIFEKAVEEPNFIPAYARLCAGLN 63

Query: 131 GELPDFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKA 190
            + PDF E         LLLN+ QEEFE+G                       EE+    
Sbjct: 64  SKNPDFGE---------LLLNRLQEEFEKGV----------------------EEEERGN 92

Query: 191 RRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQ---YENPDEEDVEALCILMSTIGEM 247
           R+R LG +R +GEL+  K+LTE+I+ EC+K+LL      +  DE  +E L +L++T G++
Sbjct: 93  RKRRLGLVRFLGELFNFKVLTEKIILECLKELLESLTEEDPRDEFSLEILLLLLTTCGKL 152

Query: 248 IDHPKAKEHMDAYFDRMEKLSNNM--KLSSRVRLMLKDSIELRKNK 291
           +D  K K+ MD   +R++K   +   +LSSR+R ML+D IELRKNK
Sbjct: 153 LDREKLKKLMDEILERIQKYLLSADPELSSRLRFMLEDLIELRKNK 198

MIF4G is named after Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Length = 198

>gnl|CDD|214713 smart00543, MIF4G, Middle domain of eukaryotic initiation factor 4G (eIF4G)

 Score =  130 bits (330), Expect = 2e-36
 Identities = 68/228 (29%), Positives = 109/228 (47%), Gaps = 38/228 (16%)

Query: 71  CRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLA 130
            +G I +L+  NF+ + +++  +N  +      ++  IF+KA+ EP F   YA     L 
Sbjct: 4   VKGLINKLSPSNFESIIKELLKLNNSDKNLRKYILELIFEKAVEEPNFIPAYARLCALLN 63

Query: 131 GELPDFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKA 190
            + PDF           LLL + QEEFE+G                       E +    
Sbjct: 64  AKNPDFGS---------LLLERLQEEFEKG----------------------LESEEESD 92

Query: 191 RRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPD----EEDVEALCILMSTIGE 246
           ++R LG +R +GELY  ++LT +I+ E +K+LL      D    +  VE L  L+ T G+
Sbjct: 93  KQRRLGLVRFLGELYNFQVLTSKIILELLKELLNDLTKLDPPRSDFSVECLLSLLPTCGK 152

Query: 247 MIDHPKAKEHMDAYFDRMEKLSNNMK---LSSRVRLMLKDSIELRKNK 291
            ++  K+ + +D   +R++          LSSR+R ML+  IELRKNK
Sbjct: 153 DLEREKSPKLLDEILERLQDYLLKKDKTELSSRLRFMLELLIELRKNK 200

Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press). Length = 200

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	369
KOG0401	970	consensus Translation initiation factor 4F, riboso	100.0
PF02854	209	MIF4G: MIF4G domain; InterPro: IPR003890 This entr	100.0
smart00543	200	MIF4G Middle domain of eukaryotic initiation facto	99.97
KOG2140	739	consensus Uncharacterized conserved protein [Gener	99.77
KOG2141	822	consensus Protein involved in high osmolarity sign	99.62
KOG3942	348	consensus MIF4G domain-containing protein [Transla	99.24
KOG2051	1128	consensus Nonsense-mediated mRNA decay 2 protein [	98.75
KOG0401	970	consensus Translation initiation factor 4F, riboso	98.42
KOG2051	1128	consensus Nonsense-mediated mRNA decay 2 protein [	97.98
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	96.92
KOG1104	759	consensus Nuclear cap-binding complex, subunit NCB	95.21
PF02847	113	MA3: MA3 domain; InterPro: IPR003891 This entry re	90.47
smart00544	113	MA3 Domain in DAP-5, eIF4G, MA-3 and other protein	85.19

>KOG0401 consensus Translation initiation factor 4F, ribosome/mRNA-bridging subunit (eIF-4G) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=7.7e-41  Score=366.45  Aligned_cols=252  Identities=40%  Similarity=0.689  Sum_probs=220.2

Q ss_pred             HhhhhhHHHHHHHhhccCChhcHHHHHHHHHhcccCChHHHHHHHHHHHHHhhcCCCchHHHHHHHHHhhh--cCCCCCC
Q 017537           61 RMRNLKWHIECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAG--ELPDFSE  138 (369)
Q Consensus        61 ~~~~~kl~~~Vk~iLNKLTp~nFd~l~~ql~~l~i~~~e~L~~vI~lIfeKAi~Ep~fs~mYA~LC~~L~~--~l~~~~~  138 (369)
                      ...++.+.+.|++|||||||.+|+.+..+++...+++.+.++++|.+|||||+.||+||++||+||..|..  ..|....
T Consensus       343 ~~~~~el~~~vrsilnkltp~~~~~l~~q~~~~~i~t~~~l~~vi~~vfdkAi~EP~f~~~yA~lc~~l~~~~~~~~~~~  422 (970)
T KOG0401|consen  343 VELKEELAKRVRSLLNKLTPERKELLIEQLIELNVDTDDALKEVIELVFDKAINEPTFCAMYARLCFDLEGPPSEPELDM  422 (970)
T ss_pred             hHHHHHHHHHHhhhcCCCchHHHHHHHHHHHhhccCcHHHHhHHHHHHHHhhhcccccchhcchhcccccCCccCCCcCC
Confidence            35556678999999999999999999999999999999999999999999999999999999999999987  2233344


Q ss_pred             ChhhhHHHHHHHHHHHHHHHhhH-HHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCcHHHHHH
Q 017537          139 DNEKITFKRLLLNKCQEEFERGE-REQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHE  217 (369)
Q Consensus       139 ~~~~~~FR~~LL~rcQ~eFe~~~-~~~~e~~k~~ee~e~~~s~eE~ee~~~k~krr~lG~i~FIGELfk~~lLte~Ii~~  217 (369)
                      ++...+||+.||++||.+|+... ....+.....+.   ...++++++.+..+++|.+|+++|||+||+..|++++|||.
T Consensus       423 ~~~~~~fr~~lL~rcq~~fe~~~~~~~~~~~~~~~~---~~~e~~le~~k~~~~~rtlgn~~~ig~l~~~~ml~e~i~~~  499 (970)
T KOG0401|consen  423 GGDEINFRRLLLNRCQKEFEGEDDKIADEYSEAEEP---DELEEELEEEKYILRRRTLGNFRFIGELFKLKMLTEKIVHA  499 (970)
T ss_pred             CCCcccHHHHHHHHhHHHhhcccHHHHHHhhhhcCc---hhHHHHHHhccceecCCccchHHHHHHHHHHHHHHHHHHHH
Confidence            56788999999999999999876 222222222111   12567788888999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCChhhHHHHHHHHHHHhhhhcCccchHH-HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHcCCcccc
Q 017537          218 CIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAKEH-MDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRR  296 (369)
Q Consensus       218 cI~~LL~~~~~p~Ee~IE~Lc~LL~tiG~~Ld~~k~k~~-md~~F~~L~~l~~~~~ls~RiRFmI~dlidLR~nnW~~r~  296 (369)
                      |+..||...+ |+|+++||+|.|++|+|..+|..+.+.. ||.||.+++.+...+..++|+|||+++++|||.++|++|+
T Consensus       500 ~v~~Ll~~~~-~~ee~ie~lc~f~~tig~~lD~~~~s~r~md~~~~~~k~~~~~~~~s~r~RfM~~~~idlR~~~w~~rr  578 (970)
T KOG0401|consen  500 CVQKLLSDDQ-PSEESIECLCRFLTTIGKKLDFSKESPRNMDEYFNSMKNLKRKPQRSNRIRFMLQSVIDLRKSGWGPRR  578 (970)
T ss_pred             HHHHhhcccc-ccchhhhhHHhhhhcccccccccCcccchhHHHHHHHHHhhhhhhhccchhhhhccccccccccccchh
Confidence            9999998532 8999999999999999999998666666 9999999999999999999999999999999999999999


Q ss_pred             cccCCC-ChHHHHHHHHHHHH
Q 017537          297 KVEGPK-KIEEVHRDAAQERQ  316 (369)
Q Consensus       297 ~~~~pk-ti~~ih~ea~~e~~  316 (369)
                      ..+++. +|++||.++..+.+
T Consensus       579 ~~~~~~~~ieei~~~~~~~~~  599 (970)
T KOG0401|consen  579 AEETNDKPIEEIAPEAPSANR  599 (970)
T ss_pred             cccCCCCchhhcchhhhhhcc
Confidence            998887 99999999987765

>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain

Probab=100.00  E-value=2.6e-34  Score=259.49  Aligned_cols=198  Identities=38%  Similarity=0.700  Sum_probs=174.8

Q ss_pred             HHHHHhhccCChhcHHHHHHHHHhcccC-ChHHHHHHHHHHHHHhhcCCCchHHHHHHHHHhhhcCCCCCCChhhhHHHH
Q 017537           69 IECRGDIGRLNAPNFKKLFEQVKAVNID-NAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSEDNEKITFKR  147 (369)
Q Consensus        69 ~~Vk~iLNKLTp~nFd~l~~ql~~l~i~-~~e~L~~vI~lIfeKAi~Ep~fs~mYA~LC~~L~~~l~~~~~~~~~~~FR~  147 (369)
                      |+++++|||||++||+.+++++..+... +++.++.+++.||++|+.+|+|+++||+||..|+...|        ..|+.
T Consensus         2 r~v~~~lnklt~~n~~~~~~~l~~~~~~~~~~~~~~i~~~i~~~a~~~~~~~~~~a~l~~~l~~~~~--------~~f~~   73 (209)
T PF02854_consen    2 RKVRGILNKLTPSNFESIIDELIKLNWSDDPETLKEIVKLIFEKAVEEPNFSPLYARLCAALNSRFP--------SEFRS   73 (209)
T ss_dssp             HHHHHHHHHCSSTTHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHCH--------HHHHH
T ss_pred             chHHHHHHHCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhhcCchHHHHHHHHHHHHhccch--------hhHHH
Confidence            6899999999999999999999998765 48999999999999999999999999999999988653        58999


Q ss_pred             HHHHHHHHHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCcHHHHHHHHHHHhcCCC
Q 017537          148 LLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYE  227 (369)
Q Consensus       148 ~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~~s~eE~ee~~~k~krr~lG~i~FIGELfk~~lLte~Ii~~cI~~LL~~~~  227 (369)
                      .|+++||++|+....                 .++.++.....+++..|+++||||||+.++++++++++|+..|+....
T Consensus        74 ~ll~~~~~~f~~~~~-----------------~~~~~~~~~~~~~~~~~~~~fl~eL~~~~vv~~~~i~~~l~~ll~~~~  136 (209)
T PF02854_consen   74 LLLNRCQEEFEERYS-----------------NEELEENRQSSKQRRRGNIRFLAELFNFGVVSEKIIFDILRELLSDGT  136 (209)
T ss_dssp             HHHHHHHHHHHHHT------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHhhh-----------------hhhHHHHHHHHHHHHhhhhhHHHhhHhhccccchhHHHHHHHHHhccc
Confidence            999999999998541                 112233445667789999999999999999999999999999998543


Q ss_pred             C-----CChhhHHHHHHHHHHHhhhhc-CccchHHHHHHHHHHHHHhhC---CCCCHHHHHHHHHHHHHHHcC
Q 017537          228 N-----PDEEDVEALCILMSTIGEMID-HPKAKEHMDAYFDRMEKLSNN---MKLSSRVRLMLKDSIELRKNK  291 (369)
Q Consensus       228 ~-----p~Ee~IE~Lc~LL~tiG~~Ld-~~k~k~~md~~F~~L~~l~~~---~~ls~RiRFmI~dlidLR~nn  291 (369)
                      .     +++++|||+|.+|.++|+.|+ .+..+..|+.+|..++....+   +.+++|+|||+++++|+|++|
T Consensus       137 ~~~~~~~~~~~ie~~~~lL~~~G~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~l~~lr~~~  209 (209)
T PF02854_consen  137 DECQPPPDEENIECLCTLLKTCGKKLENSEESPKALDEIFERLQKYANSKKDPNLSSRIRFMLEDLIELRNNK  209 (209)
T ss_dssp             HHCCHHTCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHSSSSSHHHHHHHHHHHHHHHTC
T ss_pred             ccccCCCcHhHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhcCC
Confidence            2     567999999999999999999 445678999999999998887   799999999999999999986

MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....

>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G)

Probab=99.97  E-value=9.1e-30  Score=229.93  Aligned_cols=192  Identities=34%  Similarity=0.552  Sum_probs=169.8

Q ss_pred             HHHHHhhccCChhcHHHHHHHHHhcccCChHHHHHHHHHHHHHhhcCCCchHHHHHHHHHhhhcCCCCCCChhhhHHHHH
Q 017537           69 IECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSEDNEKITFKRL  148 (369)
Q Consensus        69 ~~Vk~iLNKLTp~nFd~l~~ql~~l~i~~~e~L~~vI~lIfeKAi~Ep~fs~mYA~LC~~L~~~l~~~~~~~~~~~FR~~  148 (369)
                      +++++++||||++||+.+++++..+...+++..+.+++.||++|+.+|+|+++||+||..+....+         .|+..
T Consensus         2 ~~v~~~lnkLs~~n~~~~~~~l~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~ya~L~~~l~~~~~---------~f~~~   72 (200)
T smart00543        2 KKVKGLINKLSPSNFESIIKELLKLNNSDKNLRKYILELIFEKAVEEPNFIPAYARLCALLNAKNP---------DFGSL   72 (200)
T ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHH---------HHHHH
Confidence            578999999999999999999999988888999999999999999999999999999999987542         79999


Q ss_pred             HHHHHHHHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCcHHHHHHHHHHHhcCCCC
Q 017537          149 LLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYEN  228 (369)
Q Consensus       149 LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~~s~eE~ee~~~k~krr~lG~i~FIGELfk~~lLte~Ii~~cI~~LL~~~~~  228 (369)
                      +++.||++|++....                      .+...++++.|+++||||||+.++++..++++|+..|+.....
T Consensus        73 ll~~~~~~f~~~~e~----------------------~~~~~~~~~~~~i~fl~eL~~~~~i~~~~i~~~l~~ll~~~~~  130 (200)
T smart00543       73 LLERLQEEFEKGLES----------------------EEESDKQRRLGLVRFLGELYNFQVLTSKIILELLKELLNDLTK  130 (200)
T ss_pred             HHHHHHHHHHHHHHH----------------------HHHHhhhhHHhHHHHHHHHHHcccCcHHHHHHHHHHHHhccCC
Confidence            999999999875211                      1123456789999999999999999999999999999986433


Q ss_pred             ----CChhhHHHHHHHHHHHhhhhcCccchHHHHHHHHHHHHHhhCC---CCCHHHHHHHHHHHHHHHcC
Q 017537          229 ----PDEEDVEALCILMSTIGEMIDHPKAKEHMDAYFDRMEKLSNNM---KLSSRVRLMLKDSIELRKNK  291 (369)
Q Consensus       229 ----p~Ee~IE~Lc~LL~tiG~~Ld~~k~k~~md~~F~~L~~l~~~~---~ls~RiRFmI~dlidLR~nn  291 (369)
                          +++.++||+|.+|.++|+.|+++..+..|+.+|+.++....+.   .+++|+|||+++++|+|++.
T Consensus       131 ~~~~~~~~~ve~l~~lL~~~G~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~r~~~~l~~l~~l~~~~  200 (200)
T smart00543      131 LDPPRSDFSVECLLSLLPTCGKDLEREKSPKLLDEILERLQDYLLKKDKTELSSRLRFMLELLIELRKNK  200 (200)
T ss_pred             CCCCCcHHHHHHHHHHHHHhhHHHcCcccHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHHHhhCc
Confidence                3458999999999999999995456789999999999988776   79999999999999999863

Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)

>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]

Probab=99.77  E-value=3.6e-18  Score=172.20  Aligned_cols=191  Identities=20%  Similarity=0.394  Sum_probs=170.9

Q ss_pred             hHHHHHHHhhccCChhcHHHHHHHHHhcccCChHHHHHHHHHHHHHhhcCCCchHHHHHHHHHhhhcCCCCCCChhhhHH
Q 017537           66 KWHIECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSEDNEKITF  145 (369)
Q Consensus        66 kl~~~Vk~iLNKLTp~nFd~l~~ql~~l~i~~~e~L~~vI~lIfeKAi~Ep~fs~mYA~LC~~L~~~l~~~~~~~~~~~F  145 (369)
                      .+++.|.+++||++.+|+..++.+++..||-.+..|  +...|++....-|.|+++||.|.+.|...+|.+.        
T Consensus       163 alkksInglInkvn~sNi~~ii~eLfqeNiirgRgl--~crsv~~aq~asp~ft~vyaALvAviNskfP~Ig--------  232 (739)
T KOG2140|consen  163 ALKKSINGLINKVNASNIQEIIRELFQENIIRGRGL--LCRSVMQAQAASPGFTPVYAALVAVINSKFPQIG--------  232 (739)
T ss_pred             HHHHHhHHHHhhhhHHHHHHHHHHHHHHHHHhccch--hHHHHHHHHhcCCCCcHHHHHHHHHHccCCchHH--------
Confidence            456899999999999999999999999999888888  8999999999999999999999999999998764        


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCcHHHHHHHHHHHhcC
Q 017537          146 KRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQ  225 (369)
Q Consensus       146 R~~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~~s~eE~ee~~~k~krr~lG~i~FIGELfk~~lLte~Ii~~cI~~LL~~  225 (369)
                       .+||.+..-.|.+.++..                         -+-.++..++||++|+++++.++-+..+++.-||. 
T Consensus       233 -ElLlkrLilqf~r~f~Rn-------------------------Dk~~c~~~~kfiahLinq~VahEIv~Leil~lLLe-  285 (739)
T KOG2140|consen  233 -ELLLKRLILQFKRSFRRN-------------------------DKVSCLNASKFIAHLINQQVAHEIVALEILTLLLE-  285 (739)
T ss_pred             -HHHHHHHHHHHHHHhccc-------------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence             577777777787766532                         12358899999999999999999999999999998 


Q ss_pred             CCCCChhhHHHHHHHHHHHhhhhcCccchHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHcCCcccc
Q 017537          226 YENPDEEDVEALCILMSTIGEMIDHPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRR  296 (369)
Q Consensus       226 ~~~p~Ee~IE~Lc~LL~tiG~~Ld~~k~k~~md~~F~~L~~l~~~~~ls~RiRFmI~dlidLR~nnW~~r~  296 (369)
                        .|++++||.++.+|+.||..|-. .++..++.+|++++.+.....++.|++|||+.++..|+.+++...
T Consensus       286 --~PTddSvevaI~flkecGakL~~-VSpr~~n~IfErlR~ILhe~Eld~rvqy~iEtlf~iRkdkfk~~p  353 (739)
T KOG2140|consen  286 --RPTDDSVEVAIAFLKECGAKLAE-VSPRALNGIFERLRYILHEGELDRRVQYMIETLFQIRKDKFKSHP  353 (739)
T ss_pred             --CCCCchHHHHHHHHHHHHHHHHH-hChHHHhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhccCC
Confidence              79999999999999999999975 356789999999999999999999999999999999999988754

>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]

Probab=99.62  E-value=2.5e-14  Score=148.91  Aligned_cols=203  Identities=19%  Similarity=0.325  Sum_probs=154.3

Q ss_pred             HhhhhhHHHHHHHhhccCChhcHHHHHHHHHhcccCChH-HHHHHHHHHHHHhhcCC-----CchHHHHHHHHHhhhcCC
Q 017537           61 RMRNLKWHIECRGDIGRLNAPNFKKLFEQVKAVNIDNAV-TLAGVVSQIFDKALMEP-----TFCEMYANFFYFLAGELP  134 (369)
Q Consensus        61 ~~~~~kl~~~Vk~iLNKLTp~nFd~l~~ql~~l~i~~~e-~L~~vI~lIfeKAi~Ep-----~fs~mYA~LC~~L~~~l~  134 (369)
                      .+.-++++++|+|+||||+..|+..|+..|..++..++. ..+.-+.-...+|+..|     .++..||.|...|+... 
T Consensus       313 sE~l~rl~rkv~g~LNKLSdaNi~~I~~~i~~Ly~~~sr~~v~~sLtk~l~~~~~~~~~~ld~~~~~y~AL~~~l~~~v-  391 (822)
T KOG2141|consen  313 SEQLQRLRRKVNGSLNKLSDANIIKIIAGIAELYMNNSRYDVTSSLTKLLLKALLGPFRLLDSLLTTYAALAAMLHTMV-  391 (822)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH-
Confidence            344567899999999999999999999999999875442 23333444444555544     57889999999997643 


Q ss_pred             CCCCChhhhHHHHHHHHHHHHHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCcHHH
Q 017537          135 DFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERI  214 (369)
Q Consensus       135 ~~~~~~~~~~FR~~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~~s~eE~ee~~~k~krr~lG~i~FIGELfk~~lLte~I  214 (369)
                             +..|-..++....+.|-...+...+.         ...           -+.+.+.+.|+++||+.+++.+.+
T Consensus       392 -------g~eigahf~q~~ve~f~~~~~~~~~~---------~~~-----------~K~~~Nl~~~l~ylynF~ivs~~L  444 (822)
T KOG2141|consen  392 -------GNEIGAHFLQTFVEDFLKSYKEEEEM---------DLK-----------DKSLNNIVLFLSYLYNFGIVSCSL  444 (822)
T ss_pred             -------hhHHHHHHHHHHHHHHHHHHHHHHhc---------ccc-----------cchhhhHHHHHHHHHHhhcccHHH
Confidence                   23444555666666676665432110         000           245889999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCChhhHHHHHHHHHHHhhhhcCccchHHHHHHHHHHHHHhhCCC---CCHHHHHHHHHHHHHHHcC
Q 017537          215 MHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAKEHMDAYFDRMEKLSNNMK---LSSRVRLMLKDSIELRKNK  291 (369)
Q Consensus       215 i~~cI~~LL~~~~~p~Ee~IE~Lc~LL~tiG~~Ld~~k~k~~md~~F~~L~~l~~~~~---ls~RiRFmI~dlidLR~nn  291 (369)
                      |+++|..|..   +++|-++||+..++..||..|..+. +..+.++...++..+.+.+   .++|+|||+..+..|++|+
T Consensus       445 iydiI~kl~~---~l~e~~ve~ll~ii~~~G~~LRkDD-p~alk~~i~eiq~~a~~a~~s~~~pR~rFmleti~aLKnN~  520 (822)
T KOG2141|consen  445 IYDIIRKLAE---NLNETNVEALLTIIANCGFSLRKDD-PLALKDIITEIQSKAASAKISAISPRLRFMLETISALKNNK  520 (822)
T ss_pred             HHHHHHHHHh---chhhhhHHHHHHHHHHccchhcCCC-hHHHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHhcCC
Confidence            9999999998   7999999999999999999998754 3677888887777655432   4799999999999999988


Q ss_pred             Cccc
Q 017537          292 WQQR  295 (369)
Q Consensus       292 W~~r  295 (369)
                      -.+.
T Consensus       521 ~kki  524 (822)
T KOG2141|consen  521 LKKI  524 (822)
T ss_pred             CcCC
Confidence            7665

>KOG3942 consensus MIF4G domain-containing protein [Translation, ribosomal structure and biogenesis]

Probab=99.24  E-value=1.1e-10  Score=111.80  Aligned_cols=170  Identities=18%  Similarity=0.146  Sum_probs=137.8

Q ss_pred             ChHHHHHHHHHHHHHhhcCCCchHHHHHHHHHhhhcCCCCCCChhhhHHHHHHHHHHHHHHHhhHHHHHHhhhhcchhhh
Q 017537           97 NAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEI  176 (369)
Q Consensus        97 ~~e~L~~vI~lIfeKAi~Ep~fs~mYA~LC~~L~~~l~~~~~~~~~~~FR~~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~  176 (369)
                      +.+.|-.++-.|..+|++...|.-.-++||..+.....      .++.|++.||+.|++.|+-...-             
T Consensus       163 ~de~l~rc~~~~~r~avegg~ggl~v~klC~n~~~~~~------~gt~f~~~Lln~lrq~f~~r~gl-------------  223 (348)
T KOG3942|consen  163 DDEMLFRCGPTIARQAVEGGGGGLFVCKLCTNLGSSWR------NGTQFMDELLNLLRQGFLLRTGL-------------  223 (348)
T ss_pred             hHHHHHHHHHHHHHHHHhcCCCchhHHHHhhhhhhhhh------ccchHHHHHHHHHHHhhccchhc-------------
Confidence            34778888999999999999999999999999976532      35679999999999999965321             


Q ss_pred             hccHHHHHHHHHHHhhhHHHHHHHHHHHHhcc-----CCcHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHhhhhcCc
Q 017537          177 KQTEEEREEKRIKARRRWLGNIRLIGELYKKK-----MLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHP  251 (369)
Q Consensus       177 ~~s~eE~ee~~~k~krr~lG~i~FIGELfk~~-----lLte~Ii~~cI~~LL~~~~~p~Ee~IE~Lc~LL~tiG~~Ld~~  251 (369)
                        +        +....|++++|.|++|||..-     ++-..+++.|++.|+... +-.+..+||+...|...|..++. 
T Consensus       224 --~--------s~~~~rw~~fisfltelf~nlgs~p~~vL~~~l~~cl~~llrsp-d~~~~e~ecl~~~L~~~g~dle~-  291 (348)
T KOG3942|consen  224 --S--------SLASCRWWRFISFLTELFDNLGSCPQVVLQRSLRLCLQILLRSP-DWPEFEYECLSMKLAVEGLDLEK-  291 (348)
T ss_pred             --c--------chhHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHccCC-CcchHHHHHHHHHHHHcCccchh-
Confidence              1        123468999999999999875     566678999999999853 44578999999999999999986 


Q ss_pred             cchHHHHHHHHHHHHHhhCCCCCH-HHHHHHHHHHHHHHcCCccccc
Q 017537          252 KAKEHMDAYFDRMEKLSNNMKLSS-RVRLMLKDSIELRKNKWQQRRK  297 (369)
Q Consensus       252 k~k~~md~~F~~L~~l~~~~~ls~-RiRFmI~dlidLR~nnW~~r~~  297 (369)
                      .-+..|..+|...++......-|- -+|.++..+|+|.++.|+++..
T Consensus       292 qlP~ql~lL~~s~rDafL~~sep~a~~r~~lllliel~As~wqlpt~  338 (348)
T KOG3942|consen  292 QLPFQLLLLFPSRRDAFLVRSEPLAPWRCPLLLLIELPASAWQLPTT  338 (348)
T ss_pred             hhhHHHHHHHHHHHHhhhccccccccccchhhhccccCccccCCCCC
Confidence            355788999998888655554443 3599999999999999999743

>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]

Probab=98.75  E-value=1.6e-07  Score=102.11  Aligned_cols=184  Identities=18%  Similarity=0.307  Sum_probs=135.2

Q ss_pred             HHHHhhccCC----hhcHHHHHHHHHhcccCChHHHHHHHHHHHHHhhcCCCchHHHHHHHHHhhhcCCCCCCChhhhHH
Q 017537           70 ECRGDIGRLN----APNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSEDNEKITF  145 (369)
Q Consensus        70 ~Vk~iLNKLT----p~nFd~l~~ql~~l~i~~~e~L~~vI~lIfeKAi~Ep~fs~mYA~LC~~L~~~l~~~~~~~~~~~F  145 (369)
                      .+.+.|-+|-    -+=+|..+-++... .++...=+.+++.+|.-.-+.-...+.|++|.+.|...+|++.        
T Consensus       426 ~~d~Fl~~L~~~vsrdliD~~a~ef~~n-lNtKa~RkrLvKal~~vprt~ldllPyYsRlVAtl~~~M~dva--------  496 (1128)
T KOG2051|consen  426 NVDCFLLDLPNCVSRDLIDQAAIEFCSN-LNTKANRKRLVKALFVVPRTRLDLLPYYSRLVATLSKCMPDVA--------  496 (1128)
T ss_pred             HHHHHHccCcchHHHHHHHHHHHHHHHH-hccHHHHHHHHHhhhcccchhhhhhhHHHHHHHHHHhhhhHHH--------
Confidence            4444444443    33344444444332 6677777888999988777777788999999999988776543        


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCcHHHHHHHHHHHhcC
Q 017537          146 KRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQ  225 (369)
Q Consensus       146 R~~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~~s~eE~ee~~~k~krr~lG~i~FIGELfk~~lLte~Ii~~cI~~LL~~  225 (369)
                       .-|++..-++|........            +.+-|          ..+-+|+|||||.|.++++..-++.|++.|+.+
T Consensus       497 -t~lv~~L~~eFr~~~hkK~------------q~~ie----------tk~~~VrfIsEL~KF~lv~~~~if~cLk~ll~d  553 (1128)
T KOG2051|consen  497 -TELVTMLRKEFRSHLHKKA------------QINIE----------TKLKIVRFISELCKFQLVPKFEIFSCLKMLLND  553 (1128)
T ss_pred             -HHHHHHHHHHHHHHHhhhh------------hhhhh----------hhhhhhhhHHhhhhhCccChHHHHHHHHHHHHh
Confidence             5677777778876543210            00001          235689999999999999999999999999985


Q ss_pred             CCCCChhhHHHHHHHHHHHhhhhc-CccchHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 017537          226 YENPDEEDVEALCILMSTIGEMID-HPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELR  288 (369)
Q Consensus       226 ~~~p~Ee~IE~Lc~LL~tiG~~Ld-~~k~k~~md~~F~~L~~l~~~~~ls~RiRFmI~dlidLR  288 (369)
                      .   .-.+||.+|.||++||..|- .|.++-.|...+++|........+.+|-.-+|.+.+-+=
T Consensus       554 F---~~hnIEm~c~lLE~~GrfLlr~pEt~lrM~~~Le~i~rkK~a~~lDsr~~~~iENay~~~  614 (1128)
T KOG2051|consen  554 F---THHNIEMACVLLESCGRFLLRSPETKLRMRVFLEQIKRKKRASALDSRQATLIENAYYLC  614 (1128)
T ss_pred             c---ccccHHHHHHHHHhcchhhhcChhHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHhHHhc
Confidence            4   44469999999999999876 477788899999999977666778888888888877653

>KOG0401 consensus Translation initiation factor 4F, ribosome/mRNA-bridging subunit (eIF-4G) [Translation, ribosomal structure and biogenesis]

Probab=98.42  E-value=4.7e-08  Score=108.79  Aligned_cols=244  Identities=20%  Similarity=0.253  Sum_probs=174.5

Q ss_pred             HHHHHhhccCChhcHHHHHHHHHhc-----ccCChHHHHHHHHHHHHHhhcCCCchHHHHHHHHHhhhcCCC-CC-----
Q 017537           69 IECRGDIGRLNAPNFKKLFEQVKAV-----NIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPD-FS-----  137 (369)
Q Consensus        69 ~~Vk~iLNKLTp~nFd~l~~ql~~l-----~i~~~e~L~~vI~lIfeKAi~Ep~fs~mYA~LC~~L~~~l~~-~~-----  137 (369)
                      +.+.+.++++++++|+.+...+...     ...+.+..+.++..++.++..+|+|+.+|+..|.+....... +.     
T Consensus       629 ~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~e~~~~~~k~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  708 (970)
T KOG0401|consen  629 RKGKSGLRKLTPEMFDKISDPILDIADQSMDEEDGEASKQKGEQGGRKASDEQHFSSMRAPALEKVVPSLSSDIDDKRNR  708 (970)
T ss_pred             cccccccccCChhhcccccccccccchhhccccccchhhhcccccccccCccccccccCCcccccccccccccccccccc
Confidence            6779999999999999999998754     345788999999999999999999999999999987654321 11     


Q ss_pred             CChhhhHHHHHHHHHHHHHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCcHHHHHH
Q 017537          138 EDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHE  217 (369)
Q Consensus       138 ~~~~~~~FR~~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~~s~eE~ee~~~k~krr~lG~i~FIGELfk~~lLte~Ii~~  217 (369)
                      ...+...+.+.+..+|+.+|.+.+.......+..+. +.+...+++ +.....+++.+|++ +......+.+.+..|+..
T Consensus       709 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~-~~e~~~~~~-~~~~~~~~~~~~~v-~~~~~~~l~~~sk~l~ee  785 (970)
T KOG0401|consen  709 GSNGELLSDSYLSARCHEEFENGWSRELPSGKDGER-EPEMMSPEY-YAAKAAKRAGLGLV-IALSSELLELLSKSLLEE  785 (970)
T ss_pred             CCccccccccccchhhhhhccccccccCCCCccccc-chhhcCccc-chhhhhhccCCcch-hhhhHHHHHHHHHHHHHH
Confidence            122455788899999999999998764322221111 112222222 44556778899999 777777778899999999


Q ss_pred             HHHHHhcCCCCCChhhHHHHHHHHHHHhhhhcCc--cc---hHHHHHHHHHHHH----HhhCCCCCHHHHHHHHHHHHHH
Q 017537          218 CIKKLLGQYENPDEEDVEALCILMSTIGEMIDHP--KA---KEHMDAYFDRMEK----LSNNMKLSSRVRLMLKDSIELR  288 (369)
Q Consensus       218 cI~~LL~~~~~p~Ee~IE~Lc~LL~tiG~~Ld~~--k~---k~~md~~F~~L~~----l~~~~~ls~RiRFmI~dlidLR  288 (369)
                      |+...+.+...+..+.++..|.++++||..++..  +.   ..++-.++..+-.    ....-..+.+..|-+.|-+.++
T Consensus       786 ~~~~~~~~~~~~~ie~l~S~~~~~~~v~~~v~~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~d  865 (970)
T KOG0401|consen  786 FLSLRLEKEALKCIEELESPSLLLKTVGENIEPTLEKSPQAVEELLQLLDILVSKNPLSIETLEIGYREKFKLADDKELD  865 (970)
T ss_pred             HHHHhhhhhhhhhhhcccchhhhHHHHHHhcCcccccChhHHHHHHHHHHHHHhcCcccHHHHhhhHHHHHhhhHHHhcc
Confidence            9998887766788899999999999999999852  22   2222222222211    0111134667777777777766


Q ss_pred             -HcCCcccccccCCCChHHHHHHHHHHH
Q 017537          289 -KNKWQQRRKVEGPKKIEEVHRDAAQER  315 (369)
Q Consensus       289 -~nnW~~r~~~~~pkti~~ih~ea~~e~  315 (369)
                       -++|.--....||.+++.++...+..+
T Consensus       866 ~pk~w~~~~e~~gp~~~~~~~~~~e~~~  893 (970)
T KOG0401|consen  866 LPKGWNYIKEFLGPLIHQKILDESELVR  893 (970)
T ss_pred             cccchhHHHHhhhhHhhhccccHHHHHH
Confidence             557888888889999888888876544

>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]

Probab=97.98  E-value=0.00025  Score=77.96  Aligned_cols=191  Identities=16%  Similarity=0.240  Sum_probs=125.5

Q ss_pred             HHHHHHHhhc-cCChhcHHHHHHHHHhcccCChHHHHHHHHHHHHHhhcCCCchHHHHHHHHHhhhcCCCCCCChhhhHH
Q 017537           67 WHIECRGDIG-RLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSEDNEKITF  145 (369)
Q Consensus        67 l~~~Vk~iLN-KLTp~nFd~l~~ql~~l~i~~~e~L~~vI~lIfeKAi~Ep~fs~mYA~LC~~L~~~l~~~~~~~~~~~F  145 (369)
                      .+..+|.++- .|+.++|+.++.++-.+.=.++++-..++..+..-=.-.-+--..-|.|..-|....|++.        
T Consensus       630 ~~efiR~Li~~dL~k~tvd~~lkllRkl~W~D~e~~~yli~~~~k~w~iky~~i~~lA~llaGL~~y~~~fv--------  701 (1128)
T KOG2051|consen  630 MQEFIRYLIRSDLSKDTVDRVLKLLRKLDWSDPEVKQYLISCFSKPWKIKYQNIHALASLLAGLSSYHPEFV--------  701 (1128)
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHhcccccHHHHHHHHHHhhhhhccccccHHHHHHHHHHHHhhchhhh--------
Confidence            3456666554 6777788888888887777777777667766654332222223444555555554444331        


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCcHHHHHHHHHHHhcC
Q 017537          146 KRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQ  225 (369)
Q Consensus       146 R~~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~~s~eE~ee~~~k~krr~lG~i~FIGELfk~~lLte~Ii~~cI~~LL~~  225 (369)
                       -..+   -..+|...... ++                  .....+.|++..++|+||||+..|+...+|...+-.++..
T Consensus       702 -i~VI---D~vlE~Ir~gl-Ei------------------n~~~~nQrriA~aryL~ELynfemvds~vIl~tLy~~i~~  758 (1128)
T KOG2051|consen  702 -IHVI---DHVLEDIRPGL-EI------------------NDYVSNQRRIALARYLGELYNFEMVDSDVILNTLYHLISL  758 (1128)
T ss_pred             -hhhH---HHHHHHHHhhh-hc------------------CcHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhcc
Confidence             1111   12233322211 00                  0123456789999999999999999999999988888853


Q ss_pred             C--CC-------CChh--hHHHHHHHHHHHhhhhcCccchHHHHHHHHHHHHHhhCC--CCCHHHHHHHHHHHHHH
Q 017537          226 Y--EN-------PDEE--DVEALCILMSTIGEMIDHPKAKEHMDAYFDRMEKLSNNM--KLSSRVRLMLKDSIELR  288 (369)
Q Consensus       226 ~--~~-------p~Ee--~IE~Lc~LL~tiG~~Ld~~k~k~~md~~F~~L~~l~~~~--~ls~RiRFmI~dlidLR  288 (369)
                      .  ++       |.++  -|-.+|.+|.|||+.++.-+.+..|+.|+-..+...--.  ..|--+.++.+|.+.+-
T Consensus       759 g~~~~~~~~~ldppddlFRirlV~~lL~tc~~yf~rgs~kkkl~~fL~~fq~Y~~iKk~~~Pld~~~~f~d~~~~~  834 (1128)
T KOG2051|consen  759 GHFENLTPSALDPPDDLFRIRLVCMLLQTCGPYFTRGSTKKKLDQFLVAFQRYILIKKSQQPLDMEYEFEDFLELV  834 (1128)
T ss_pred             cccCCCCcccCCChHHHHHHHHHHHHHHHcccccccchhHHHHHHHHHHHHHHhhcccccCCCchhhhHHhhhhhc
Confidence            2  12       3232  488899999999999997777889999988888754333  37888889999888764

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=96.92  E-value=0.042  Score=58.17  Aligned_cols=153  Identities=18%  Similarity=0.192  Sum_probs=91.9

Q ss_pred             hHHHHHHHhhccCChhcHHHHHHHHHhccc----CChHHHHHHHHHHHHHhhcCCCc----hHHHHHHHHHhhhcCCCCC
Q 017537           66 KWHIECRGDIGRLNAPNFKKLFEQVKAVNI----DNAVTLAGVVSQIFDKALMEPTF----CEMYANFFYFLAGELPDFS  137 (369)
Q Consensus        66 kl~~~Vk~iLNKLTp~nFd~l~~ql~~l~i----~~~e~L~~vI~lIfeKAi~Ep~f----s~mYA~LC~~L~~~l~~~~  137 (369)
                      -+...++.+|..+|.+.|+.+++=+-.+.+    .+.+....++++|.++|--+..|    .....++...+...+|-+.
T Consensus       178 ~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs  257 (556)
T PF05918_consen  178 FIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFS  257 (556)
T ss_dssp             HHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-B
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhc
Confidence            356889999999999999999976666766    57888999999999999543333    4777888888877777665


Q ss_pred             CChhhhHHHHHHHHHHHHHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhcc--CCcHHHH
Q 017537          138 EDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKK--MLTERIM  215 (369)
Q Consensus       138 ~~~~~~~FR~~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~~s~eE~ee~~~k~krr~lG~i~FIGELfk~~--lLte~Ii  215 (369)
                      .....+.|-.++..+.--.|...                   +++          ..+-.++.++|+--+-  .-....+
T Consensus       258 ~~v~Sskfv~y~~~kvlP~l~~l-------------------~e~----------~kl~lLk~lAE~s~~~~~~d~~~~L  308 (556)
T PF05918_consen  258 RGVSSSKFVNYMCEKVLPKLSDL-------------------PED----------RKLDLLKLLAELSPFCGAQDARQLL  308 (556)
T ss_dssp             TTB--HHHHHHHHHHTCCCTT----------------------------------HHHHHHHHHHHHHTT----THHHHH
T ss_pred             CCCChHHHHHHHHHHhcCChhhC-------------------ChH----------HHHHHHHHHHHHcCCCCcccHHHHH
Confidence            54455666666654322222211                   011          2345677777776652  1123333


Q ss_pred             HHHHHHHhcCCCC----CC--hhhHHHHHHHHHHHhhh
Q 017537          216 HECIKKLLGQYEN----PD--EEDVEALCILMSTIGEM  247 (369)
Q Consensus       216 ~~cI~~LL~~~~~----p~--Ee~IE~Lc~LL~tiG~~  247 (369)
                      -.+...|+...+.    |+  --.||||...+...|+.
T Consensus       309 ~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k  346 (556)
T PF05918_consen  309 PSIFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQLARK  346 (556)
T ss_dssp             HHHHHHHHTTS----------HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCCCCCCCcccchHhhHHHHHHHHHhhh
Confidence            3333444332211    21  14699999999998875

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG1104 consensus Nuclear cap-binding complex, subunit NCBP1/CBP80 [RNA processing and modification]

Probab=95.21  E-value=1.4  Score=47.94  Aligned_cols=193  Identities=15%  Similarity=0.153  Sum_probs=127.8

Q ss_pred             hHHHHHHHhhccCC-------hhcHHHHHHHHHhcccCChHHHHHHHHHHHHHhhcCCCchHHHHHHHHHhhhcCCCCCC
Q 017537           66 KWHIECRGDIGRLN-------APNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSE  138 (369)
Q Consensus        66 kl~~~Vk~iLNKLT-------p~nFd~l~~ql~~l~i~~~e~L~~vI~lIfeKAi~Ep~fs~mYA~LC~~L~~~l~~~~~  138 (369)
                      .+-+.+.+..-++.       .+|.+.++.-+.+-   -+..-..+++.+-.=|+.-|.=...||-|...++.+-+.   
T Consensus        26 ~l~krl~~~i~~vg~~s~ss~e~~l~~l~~~l~~~---~~~~~~~iL~~L~~ca~~lP~K~~~yaTLvgllN~kn~~---   99 (759)
T KOG1104|consen   26 TLEKRLESLIREVGEPSGSSVEDNLENLVAVLEAD---LENFKSKILDILNTCAVYLPEKITAYATLVGLLNLKNFN---   99 (759)
T ss_pred             HHHHHHHHHHHhhcCCCCCcHHHhHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHhccchh---
Confidence            34466677666666       23444443333221   122445678888888999999999999999998765332   


Q ss_pred             ChhhhHHHHHHHHHHHHHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCcHHHHHHH
Q 017537          139 DNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHEC  218 (369)
Q Consensus       139 ~~~~~~FR~~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~~s~eE~ee~~~k~krr~lG~i~FIGELfk~~lLte~Ii~~c  218 (369)
                            |-.-++...-.+|......                ...         .+..+.++|++.|++.+++...-+...
T Consensus       100 ------fg~~~v~~~~~~~q~sl~~----------------~~~---------n~ar~llrfL~dL~~~~vl~~~sli~l  148 (759)
T KOG1104|consen  100 ------FGGEFVEYMIEELQESLKS----------------GNW---------NEARYLLRFLSDLSNCHVLQADSLINL  148 (759)
T ss_pred             ------hHHHHHHHHHHHHHHHhhc----------------CCh---------HHHHHHHHHHHHHhcCCccChHHHHHH
Confidence                  3333333333333321110                000         135689999999999999999988888


Q ss_pred             HHHHhcCC------CCCChhhHHHHHHHHHHHhhhhcCccchHHHHHHHHHHHHHhhCCC---------------CC--H
Q 017537          219 IKKLLGQY------ENPDEEDVEALCILMSTIGEMIDHPKAKEHMDAYFDRMEKLSNNMK---------------LS--S  275 (369)
Q Consensus       219 I~~LL~~~------~~p~Ee~IE~Lc~LL~tiG~~Ld~~k~k~~md~~F~~L~~l~~~~~---------------ls--~  275 (369)
                      ...|+...      +.-.+-.+-|+..-|--+|+.|.. +.+..|+.++..++.....++               ..  -
T Consensus       149 ~esl~~~~~e~~~Pqvr~D~~v~~vLs~lPw~g~el~e-~~~~~~e~ll~~ie~Yl~~R~~shi~lL~vw~~~~~~~qee  227 (759)
T KOG1104|consen  149 FESLLDAAIEENVPQVRRDYYVYCVLSSLPWFGRELNE-KKPTEMEELLVYIEIYLKKRKKSHINLLNVWSGEPDHPQEE  227 (759)
T ss_pred             HHHHHHHHHhhcCcchhhhHHHHHHHhccchhhhhhcc-cchHHHHHHHHHHHHHHHHhcccccchhhcCCCCCCchHHH
Confidence            88888642      112344588888888889999975 456789999998887543221               11  2


Q ss_pred             HHHHHHHHHHHHHHcCCcccc
Q 017537          276 RVRLMLKDSIELRKNKWQQRR  296 (369)
Q Consensus       276 RiRFmI~dlidLR~nnW~~r~  296 (369)
                      =++.+...+..+|.|+|...+
T Consensus       228 yle~L~~qI~~lr~n~w~e~h  248 (759)
T KOG1104|consen  228 YLELLWAQIQKLRQNDWAENH  248 (759)
T ss_pred             HHHHHHHHHHHHHhcCccccc
Confidence            478899999999999999853

>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]

Probab=90.47  E-value=4.1  Score=33.32  Aligned_cols=62  Identities=18%  Similarity=0.232  Sum_probs=45.1

Q ss_pred             HHHHHhhccC-ChhcHHHHHHHHHhcccCChHHHHHHHHHHHHHhhcC-CCchHHHHHHHHHhhhc
Q 017537           69 IECRGDIGRL-NAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALME-PTFCEMYANFFYFLAGE  132 (369)
Q Consensus        69 ~~Vk~iLNKL-Tp~nFd~l~~ql~~l~i~~~e~L~~vI~lIfeKAi~E-p~fs~mYA~LC~~L~~~  132 (369)
                      ++++.+|..- .-.+.+..+..|.++...  .....+|..+++.+.++ +.+.++|+.|...|...
T Consensus         3 k~i~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~   66 (113)
T PF02847_consen    3 KKIFSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKR   66 (113)
T ss_dssp             HHHHHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhc
Confidence            4444444321 134677788888877666  67778999999999999 89999999999999763

It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....

>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins

Probab=85.19  E-value=7.4  Score=31.88  Aligned_cols=62  Identities=19%  Similarity=0.158  Sum_probs=47.0

Q ss_pred             HHHHHhhcc-CChhcHHHHHHHHHhcccCChHHHHHHHHHHHHHhhcC-CCchHHHHHHHHHhhhc
Q 017537           69 IECRGDIGR-LNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALME-PTFCEMYANFFYFLAGE  132 (369)
Q Consensus        69 ~~Vk~iLNK-LTp~nFd~l~~ql~~l~i~~~e~L~~vI~lIfeKAi~E-p~fs~mYA~LC~~L~~~  132 (369)
                      +++..+|+. ++.+.++..+..|.+++..  .....++..++.-++++ +.+.++|+.|...|...
T Consensus         3 k~i~~~l~ey~~~~D~~ea~~~l~~L~~~--~~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~   66 (113)
T smart00544        3 KKIFLIIEEYLSSGDTDEAVHCLLELKLP--EQHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQA   66 (113)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHhCCC--cchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHc
Confidence            334444432 2356888888899888776  46777999999999998 58999999999999853

Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	369
1hu3_A	260	Middle Domain Of Human Eif4gii Length = 260		5e-35
2vso_E	284	Crystal Structure Of A Translation Initiation Compl		2e-13

>pdb|1HU3|A Chain A, Middle Domain Of Human Eif4gii Length = 260

Iteration: 1
 Score =  144 bits (364), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 87/248 (35%), Positives = 127/248 (51%), Gaps = 11/248 (4%)
Query: 72  RGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAG 131
           R  + +L    F +L +QV  + +D    L GV+  +F+KA+ EP+F   YAN    L  
Sbjct: 16  RSILNKLTPQXFNQLXKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANXCRCLVT 75
Query: 132 -ELPDFSEDNEKITFKRLLLNKCXXXXXXXXXXXXXANK-------ADXXXXXXXXXXXX 183
            ++P   +    + F++LLLN+C               K       A             
Sbjct: 76  LKVPXADKPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDEL 135
Query: 184 XXXXXXXXXXWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMST 243
                      +GNI+ IGEL+K K LTE I H+C+ KLL   +N DEE +E LC L++T
Sbjct: 136 EEAKDKARRRSIGNIKFIGELFKLKXLTEAIXHDCVVKLL---KNHDEESLECLCRLLTT 192
Query: 244 IGEMIDHPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKK 303
           IG+ +D  KAK   D YF++ EK+    K SSR+R  L+D I+LR   W  RR  +GPK 
Sbjct: 193 IGKDLDFEKAKPRXDQYFNQXEKIVKERKTSSRIRFXLQDVIDLRLCNWVSRRADQGPKT 252
Query: 304 IEEVHRDA 311
           IE++H++A
Sbjct: 253 IEQIHKEA 260

>pdb|2VSO|E Chain E, Crystal Structure Of A Translation Initiation Complex Length = 284

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 97/211 (45%), Gaps = 17/211 (8%)
Query: 97  NAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGEL-PDFS-EDNEKITFKRLLLN--- 151
           N  TL  V+ QIF KA  EP +  MYA     +  EL PD + E NE  T  +L+L+   
Sbjct: 71  NGETLKAVIEQIFLKACDEPHWSSMYAQLCGKVVKELNPDITDETNEGKTGPKLVLHYLV 130
Query: 152 -KCXXXXXXXXXXXXXANKADXXXXXXXXXXXXXXXXXXXXXXWLGNIRLIGELYKKKML 210
            +C              N+ D                       LG +R IG LY+  +L
Sbjct: 131 ARCHAEFDKGWTDKLPTNE-DGTPLEPEMMSEEYYAAASAKRRGLGLVRFIGFLYRLNLL 189
Query: 211 TERIMHECIKKLLGQY-ENPDEEDVEALCILMSTIGEMIDHP---------KAKEHMDAY 260
           T ++M EC ++L+    ++P EE +E++  L++T+GE  +           +  + +D+ 
Sbjct: 190 TGKMMFECFRRLMKDLTDSPSEETLESVVELLNTVGEQFETDSFRTGQATLEGSQLLDSL 249
Query: 261 FDRMEKLSNNMKLSSRVRLMLKDSIELRKNK 291
           F  ++ +    K+SSR++  L D  ELR +K
Sbjct: 250 FGILDNIIQTAKISSRIKFKLIDIKELRHDK 280

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	369
1hu3_A	260	EIF4GII; heat repeat, translation; 2.37A {Homo sap	7e-68
2vso_E	284	Eukaryotic initiation factor 4F subunit P150; acet	2e-54
2i2o_A	224	EIF4G-like protein; protein structure initiative,	4e-51
3rk6_A	234	Polyadenylate-binding protein-interacting protein;	2e-45
1uw4_B	248	UPF2, regulator of nonsense transcripts 2; nonsens	2e-23

>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14 Length = 260

 Score =  213 bits (544), Expect = 7e-68
 Identities = 107/248 (43%), Positives = 155/248 (62%), Gaps = 11/248 (4%)

Query: 72  RGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAG 131
           R  + +L    F +L +QV  + +D    L GV+  +F+KA+ EP+F   YAN    L  
Sbjct: 16  RSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVT 75

Query: 132 -ELPDFSEDNEKITFKRLLLNKCQEEFERG-------EREQEEANKADKEGEIKQTEEER 183
            ++P   +    + F++LLLN+CQ+EFE+        E++Q+E   A    E  +  +E 
Sbjct: 76  LKVPMADKPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDEL 135

Query: 184 EEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMST 243
           EE + KARRR +GNI+ IGEL+K KMLTE IMH+C+ KLL   +N DEE +E LC L++T
Sbjct: 136 EEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLL---KNHDEESLECLCRLLTT 192

Query: 244 IGEMIDHPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKK 303
           IG+ +D  KAK  MD YF++MEK+    K SSR+R ML+D I+LR   W  RR  +GPK 
Sbjct: 193 IGKDLDFEKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCNWVSRRADQGPKT 252

Query: 304 IEEVHRDA 311
           IE++H++A
Sbjct: 253 IEQIHKEA 260

>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E* Length = 284

 Score =  179 bits (455), Expect = 2e-54
 Identities = 65/244 (26%), Positives = 112/244 (45%), Gaps = 23/244 (9%)

Query: 72  RGDIGRLNAPNFKKLFEQVKAV-----NIDNAVTLAGVVSQIFDKALMEPTFCEMYANFF 126
           +  + +L    F  +  ++ A+        N  TL  V+ QIF KA  EP +  MYA   
Sbjct: 41  KSLLNKLTLEMFDAISSEILAIANISVWETNGETLKAVIEQIFLKACDEPHWSSMYAQLC 100

Query: 127 YFLAGELPDFSED------NEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTE 180
             +  EL     D               L+ +C  EF++G  ++   N+     E  +  
Sbjct: 101 GKVVKELNPDITDETNEGKTGPKLVLHYLVARCHAEFDKGWTDKLPTNEDGTPLE-PEMM 159

Query: 181 EEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQY-ENPDEEDVEALCI 239
            E       A+RR LG +R IG LY+  +LT ++M EC ++L+    ++P EE +E++  
Sbjct: 160 SEEYYAAASAKRRGLGLVRFIGFLYRLNLLTGKMMFECFRRLMKDLTDSPSEETLESVVE 219

Query: 240 LMSTIGEMIDHP---------KAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKN 290
           L++T+GE  +           +  + +D+ F  ++ +    K+SSR++  L D  ELR +
Sbjct: 220 LLNTVGEQFETDSFRTGQATLEGSQLLDSLFGILDNIIQTAKISSRIKFKLIDIKELRHD 279

Query: 291 K-WQ 293
           K W 
Sbjct: 280 KNWN 283

>2i2o_A EIF4G-like protein; protein structure initiative, PSI, cente eukaryotic structural genomics, CESG, structural genomics, function; HET: MSE; 1.92A {Danio rerio} Length = 224

 Score =  169 bits (429), Expect = 4e-51
 Identities = 46/228 (20%), Positives = 91/228 (39%), Gaps = 37/228 (16%)

Query: 82  NFKKLFEQV--KAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSED 139
           +F    +++   A+    +V L  V S I D++L +  F        Y +       +  
Sbjct: 15  SFDLETQKLLKTALKDPGSVDLEKVSSVIVDQSLKDQVFSREAGRICYTIVQAEAKQTNG 74

Query: 140 NEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIR 199
           +    F+R LLN+ Q+EF+                        REE R ++ + W+  + 
Sbjct: 75  S---VFRRNLLNRLQQEFK-----------------------AREETRKRSTQEWVCLVS 108

Query: 200 LIGELYKKKMLTERIM-------HECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPK 252
            I  ++    +    M       ++C+ +L       +EE+V+ L + +  IG+ ++   
Sbjct: 109 FICNIFDYLKVNNMPMVALVHPVYDCLFRLAQSDALKNEEEVDCLVLQLHRIGDQLEKMN 168

Query: 253 AKEHMDAYFDRM-EKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVE 299
             + MD  F+ + +       LSS  RL+L + +E R   W+     +
Sbjct: 169 -VQLMDELFNLLRDGFLLQEDLSSMGRLLLLEILEFRAGGWKLSDTAQ 215

>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens} Length = 234

 Score =  154 bits (391), Expect = 2e-45
 Identities = 45/222 (20%), Positives = 87/222 (39%), Gaps = 38/222 (17%)

Query: 82  NFKKLFEQVKAV---NIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSE 138
           +F+   EQ        +     L  +V  I+ +A   P F  M A    +L+  L     
Sbjct: 36  SFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTIS-- 93

Query: 139 DNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNI 198
             +   F++LLL +C+ E+E                     +++  +     R+R+   +
Sbjct: 94  -PQSGNFRQLLLQRCRTEYEV--------------------KDQAAKGDEVTRKRFHAFV 132

Query: 199 RLIGELYKK--------KMLTERIMHECIKKLLGQY-ENPDEEDVEALCILMSTIGEMID 249
             +GELY          ++    I+   +++LL     NP ++++     L+   G +++
Sbjct: 133 LFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLE 192

Query: 250 ---HPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELR 288
                K K  M+    R+E +  +   S  V+ ML   +ELR
Sbjct: 193 DAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELR 234

>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14 Length = 248

 Score = 97.0 bits (241), Expect = 2e-23
 Identities = 36/260 (13%), Positives = 91/260 (35%), Gaps = 53/260 (20%)

Query: 77  RLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDF 136
            L+    +K+  Q++ +   +       V       ++     + Y +  + +A  L   
Sbjct: 15  DLSKVTTEKVLRQMRKLPWQDQE-----VKDYVICCMINIWNVK-YNSI-HCVANLLAGL 67

Query: 137 SEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLG 196
               E +     +++   E+   G    +                       K  +R + 
Sbjct: 68  VLYQEDVGIH--VVDGVLEDIRLGMEVNQ----------------------PKFNQRRIS 103

Query: 197 NIRLIGELYKKKMLTERIMHECIKKLL----GQYENPDEED-------VEALCILMSTIG 245
           + + +GELY  +M+   ++   +            +P   D       +  +C ++ T G
Sbjct: 104 SAKFLGELYNYRMVESAVIFRTLYSFTSFGVNPDGSPSSLDPPEHLFRIRLVCTILDTCG 163

Query: 246 EMIDHPKAKEHMD---AYFDR-------MEKLSNNMKLSSRVRLMLKDSIELRKNKWQQR 295
           +  D   +K  +D    YF R       +E  + +      +  M+ D++EL + K +  
Sbjct: 164 QYFDRGSSKRKLDCFLVYFQRYVWWKKSLEVWTKDHPFPIDIDYMISDTLELLRPKIKLC 223

Query: 296 RKV-EGPKKIEEVHRDAAQE 314
             + E  ++++++ R+   +
Sbjct: 224 NSLEESIRQVQDLEREFLIK 243

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	369
1hu3_A	260	EIF4GII; heat repeat, translation; 2.37A {Homo sap	100.0
2vso_E	284	Eukaryotic initiation factor 4F subunit P150; acet	100.0
3rk6_A	234	Polyadenylate-binding protein-interacting protein;	100.0
2i2o_A	224	EIF4G-like protein; protein structure initiative,	100.0
1uw4_B	248	UPF2, regulator of nonsense transcripts 2; nonsens	99.72
1h2v_C	771	80 kDa nuclear CAP binding protein; CAP-binding-co	98.97
4b89_A	249	General negative regulator of transcription subun;	96.13
4gmj_A	229	CCR4-NOT transcription complex subunit 1; mRNA dec	94.98
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	85.63

>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14

Probab=100.00  E-value=1.9e-60  Score=453.01  Aligned_cols=248  Identities=42%  Similarity=0.729  Sum_probs=189.6

Q ss_pred             HhhhhhHHHHHHHhhccCChhcHHHHHHHHHhcccCChHHHHHHHHHHHHHhhcCCCchHHHHHHHHHhhh-cCCCCCCC
Q 017537           61 RMRNLKWHIECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAG-ELPDFSED  139 (369)
Q Consensus        61 ~~~~~kl~~~Vk~iLNKLTp~nFd~l~~ql~~l~i~~~e~L~~vI~lIfeKAi~Ep~fs~mYA~LC~~L~~-~l~~~~~~  139 (369)
                      ..+.++++++|+++||||||+||+.++.||+++++++++.+++||++||+||+.||+|++|||+||..|.. .+|....+
T Consensus         5 ~~~~~~l~r~v~giLNKLT~~nf~~i~~ql~~~~i~~~~~l~~vi~~if~kA~~ep~f~~~YA~Lc~~L~~~~~p~~~~~   84 (260)
T 1hu3_A            5 NIKTQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMADKP   84 (260)
T ss_dssp             HHHHHHHHHHHHHHHTCSSCCCHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCCCC-----
T ss_pred             HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhCCcccCC
Confidence            45567789999999999999999999999999999999999999999999999999999999999999987 56765444


Q ss_pred             hhhhHHHHHHHHHHHHHHHhhHHHHHHhhhh-------cchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCcH
Q 017537          140 NEKITFKRLLLNKCQEEFERGEREQEEANKA-------DKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTE  212 (369)
Q Consensus       140 ~~~~~FR~~LL~rcQ~eFe~~~~~~~e~~k~-------~ee~e~~~s~eE~ee~~~k~krr~lG~i~FIGELfk~~lLte  212 (369)
                      +.+..||++||++||++|++.+......++.       ..+.+..+..+|+++.+.+.|+|++|+|+||||||+++|+++
T Consensus        85 ~~~~~Fr~~LL~rcq~eFe~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~ee~~~~~k~r~lg~i~FIgeLy~~~~l~~  164 (260)
T 1hu3_A           85 GNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTE  164 (260)
T ss_dssp             ----CHHHHHHHHHHHHHHHHTC------------------------------CCSSHHHHHHHHHHHHHHHHTTTCSCH
T ss_pred             ccchHHHHHHHHHHHHHHhcccchhhhHHHHhhhhcccCCHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCH
Confidence            5678899999999999999987642211100       001111223345566667889999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHhhhhcCccchHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHcCC
Q 017537          213 RIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKW  292 (369)
Q Consensus       213 ~Ii~~cI~~LL~~~~~p~Ee~IE~Lc~LL~tiG~~Ld~~k~k~~md~~F~~L~~l~~~~~ls~RiRFmI~dlidLR~nnW  292 (369)
                      +|||+|+..||+   +|+|++|||+|.||++||+.|+++++++.|+.||++|+.++.+.++|+|+||||+|++|||++||
T Consensus       165 ~i~~~~l~~Ll~---~~~e~~iE~l~~lL~tvG~~L~~~~~~~~l~~~f~~l~~~~~~~~ls~Rirfmi~~l~dLR~~~W  241 (260)
T 1hu3_A          165 AIMHDCVVKLLK---NHDEESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCNW  241 (260)
T ss_dssp             HHHHHHHHHHHH---SCSHHHHHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999998   69999999999999999999998777789999999999999999999999999999999999999


Q ss_pred             cccccccCCCChHHHHHHH
Q 017537          293 QQRRKVEGPKKIEEVHRDA  311 (369)
Q Consensus       293 ~~r~~~~~pkti~~ih~ea  311 (369)
                      ++++.+.|||||+|||+||
T Consensus       242 ~~~~~~~~pkti~~i~~ea  260 (260)
T 1hu3_A          242 VSRRADQGPKTIEQIHKEA  260 (260)
T ss_dssp             CC-----------------
T ss_pred             CCCccccCCCcHHHHHhhC
Confidence            9999999999999999997

>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*

Probab=100.00  E-value=5.2e-55  Score=420.42  Aligned_cols=246  Identities=27%  Similarity=0.479  Sum_probs=195.9

Q ss_pred             ccccccCCccccch-H-------------hhhhhHHHHHHHhhccCChhcHHHHHHHHHhccc-----CChHHHHHHHHH
Q 017537           47 VIRSDNRGKRRLSK-R-------------MRNLKWHIECRGDIGRLNAPNFKKLFEQVKAVNI-----DNAVTLAGVVSQ  107 (369)
Q Consensus        47 ~~~s~~~~k~~~~~-~-------------~~~~kl~~~Vk~iLNKLTp~nFd~l~~ql~~l~i-----~~~e~L~~vI~l  107 (369)
                      |.+|+|+|+|.... .             .+.+.+.++|++|||||||+||+.++.||+++++     ++++.|++||++
T Consensus         2 l~~s~~~w~P~~~~~~~~~~~~~~~~~~~~~~e~l~r~vkgiLNKLT~~nf~~i~~ql~~~~~~~~~~~~~~~l~~vi~~   81 (284)
T 2vso_E            2 LVPSANRWVPKFKSKKTEKKLAPDGKTELLDKDEVERKMKSLLNKLTLEMFDAISSEILAIANISVWETNGETLKAVIEQ   81 (284)
T ss_dssp             -----CCCCCC---------------CCCCCHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHGGGGCSBCHHHHHHHHH
T ss_pred             CCCCCCCCCChhhhcccccccCCCcccccccHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhccccCcHHHHHHHHHH
Confidence            46789999995542 1             2346689999999999999999999999999876     788999999999


Q ss_pred             HHHHhhcCCCchHHHHHHHHHhhhcCCC-CCCC-----hhhhHHHHHHHHHHHHHHHhhHHHHHHhhhhcchhhhh-ccH
Q 017537          108 IFDKALMEPTFCEMYANFFYFLAGELPD-FSED-----NEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIK-QTE  180 (369)
Q Consensus       108 IfeKAi~Ep~fs~mYA~LC~~L~~~l~~-~~~~-----~~~~~FR~~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~-~s~  180 (369)
                      ||+||+.||+|++|||+||..|...+|. +.++     .+...||++||++||++|++.+.+..+.+....+.+.+ +++
T Consensus        82 If~kA~~ep~fs~~YA~Lc~~l~~~l~~~i~~e~~~~k~g~~~Fr~~LL~rcq~eFe~~~~~~~~~~~~~~~~e~e~~~~  161 (284)
T 2vso_E           82 IFLKACDEPHWSSMYAQLCGKVVKELNPDITDETNEGKTGPKLVLHYLVARCHAEFDKGWTDKLPTNEDGTPLEPEMMSE  161 (284)
T ss_dssp             HHHHHHHCGGGHHHHHHHHHHHHHHSCTTCCBCC---CCTHHHHHHHHHHHHHHHHHHCCCSSCC------------CCT
T ss_pred             HHHHHHcCcchHHHHHHHHHHHHHhcCcccccccccccchhhHHHHHHHHHHHHHHhhhhhhhhhhccccchhhhhhhhh
Confidence            9999999999999999999999988763 3221     13568999999999999999875321110000001111 222


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhccCCcHHHHHHHHHHHhcCC-CCCChhhHHHHHHHHHHHhhhhcCcc-------
Q 017537          181 EEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQY-ENPDEEDVEALCILMSTIGEMIDHPK-------  252 (369)
Q Consensus       181 eE~ee~~~k~krr~lG~i~FIGELfk~~lLte~Ii~~cI~~LL~~~-~~p~Ee~IE~Lc~LL~tiG~~Ld~~k-------  252 (369)
                       | +|.+.+.|+|++|+|+||||||+++|++++|||+||..||++. .+|+|++|||+|.||++||+.||++.       
T Consensus       162 -e-~~~~~~~k~r~lg~i~FIgeLyk~~~l~~~i~~~ci~~LL~~~~~~p~e~~iE~l~~lL~tvG~~Ld~~~~~~~~~~  239 (284)
T 2vso_E          162 -E-YYAAASAKRRGLGLVRFIGFLYRLNLLTGKMMFECFRRLMKDLTDSPSEETLESVVELLNTVGEQFETDSFRTGQAT  239 (284)
T ss_dssp             -T-HHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTSCC-------
T ss_pred             -H-HHHHHHHHHHHhhHHHHHHHHHhccCCcHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence             2 2456788999999999999999999999999999999999731 26999999999999999999999754       


Q ss_pred             --chHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHc-CCcc
Q 017537          253 --AKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKN-KWQQ  294 (369)
Q Consensus       253 --~k~~md~~F~~L~~l~~~~~ls~RiRFmI~dlidLR~n-nW~~  294 (369)
                        ++..||.||++|+.++.+.++|+|+||||+||+|||++ ||++
T Consensus       240 ~~~~~~md~~f~~l~~l~~~~~ls~RirFml~dlidLR~n~~W~~  284 (284)
T 2vso_E          240 LEGSQLLDSLFGILDNIIQTAKISSRIKFKLIDIKELRHDKNWNS  284 (284)
T ss_dssp             -CHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHTSTTC-
T ss_pred             hhhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcccCCCC
Confidence              36799999999999998899999999999999999996 9985

>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.3e-50  Score=378.18  Aligned_cols=204  Identities=24%  Similarity=0.402  Sum_probs=180.5

Q ss_pred             hhhhhHHHHHHHhhccCC--hhcHHHHHHHHHhc---ccCChHHHHHHHHHHHHHhhcCCCchHHHHHHHHHhhhcCCCC
Q 017537           62 MRNLKWHIECRGDIGRLN--APNFKKLFEQVKAV---NIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDF  136 (369)
Q Consensus        62 ~~~~kl~~~Vk~iLNKLT--p~nFd~l~~ql~~l---~i~~~e~L~~vI~lIfeKAi~Ep~fs~mYA~LC~~L~~~l~~~  136 (369)
                      ...+.+.++|+++|||||  |+|||.++++|+++   ++++++.|+.||++||+||++||+||++||+||.+|...++..
T Consensus        14 ~~~~~l~r~v~~iLNkLT~~p~~f~~l~~~i~~~~~~~~~~~~~L~~vi~lIfekAi~ep~fs~~YA~LC~~l~~~l~~~   93 (234)
T 3rk6_A           14 GRGSTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTIS   93 (234)
T ss_dssp             ----CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHCCCC
T ss_pred             cchHHHHHHHHHHHHHccCChhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCCC
Confidence            446778999999999999  99999999999987   7899999999999999999999999999999999999877643


Q ss_pred             CCChhhhHHHHHHHHHHHHHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------c
Q 017537          137 SEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKK--------K  208 (369)
Q Consensus       137 ~~~~~~~~FR~~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~~s~eE~ee~~~k~krr~lG~i~FIGELfk~--------~  208 (369)
                      +   ++.+||++||++||++|++.++..    +.         +       .+.|+|++|+|+||||||++        +
T Consensus        94 ~---~~~~Fr~lLL~rcQ~eFe~~~~~~----~~---------d-------~~~k~r~lg~i~FIgELf~~l~~~~~~~~  150 (234)
T 3rk6_A           94 P---QSGNFRQLLLQRCRTEYEVKDQAA----KG---------D-------EVTRKRFHAFVLFLGELYLNLEIKGTNGQ  150 (234)
T ss_dssp             C---TTCCHHHHHHHHHHHHHTTHHHHT----SS---------C-------HHHHHHHHHHHHHHHHHHHHCCEECTTSS
T ss_pred             C---chhHHHHHHHHHHHHHHHhhHHhh----hc---------c-------HHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence            3   356899999999999999987532    11         1       13578999999999999998        8


Q ss_pred             CCcHHHHHHHHHHHhcC-CCCCChhhHHHHHHHHHHHhhhhcC---ccchHHHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 017537          209 MLTERIMHECIKKLLGQ-YENPDEEDVEALCILMSTIGEMIDH---PKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDS  284 (369)
Q Consensus       209 lLte~Ii~~cI~~LL~~-~~~p~Ee~IE~Lc~LL~tiG~~Ld~---~k~k~~md~~F~~L~~l~~~~~ls~RiRFmI~dl  284 (369)
                      +++++|||.|+.+|+.. ..+|+|++|||+|.||++||+.||+   +++++.||.||++|+.+..++++|+|+||||+||
T Consensus       151 ~l~e~I~~~ci~~Ll~~l~~~p~ee~vE~l~~lL~tvG~~Ld~~~~~~~~~~md~~f~rl~~i~~~~~ls~Rirfml~dl  230 (234)
T 3rk6_A          151 VTRADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKL  230 (234)
T ss_dssp             EECCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence            99999999999999874 2469999999999999999999997   5778899999999999999999999999999999


Q ss_pred             HHHH
Q 017537          285 IELR  288 (369)
Q Consensus       285 idLR  288 (369)
                      +|||
T Consensus       231 ieLR  234 (234)
T 3rk6_A          231 VELR  234 (234)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            9998

>2i2o_A EIF4G-like protein; protein structure initiative, PSI, cente eukaryotic structural genomics, CESG, structural genomics, function; HET: MSE; 1.92A {Danio rerio}

Probab=100.00  E-value=7.7e-46  Score=345.45  Aligned_cols=194  Identities=23%  Similarity=0.408  Sum_probs=163.2

Q ss_pred             cCChhcHHHHHHHHHhccc--CChHHHHHHHHHHHHHhhcCCCchHHHHHHHHHhhhcCCCCCCChhhhHHHHHHHHHHH
Q 017537           77 RLNAPNFKKLFEQVKAVNI--DNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSEDNEKITFKRLLLNKCQ  154 (369)
Q Consensus        77 KLTp~nFd~l~~ql~~l~i--~~~e~L~~vI~lIfeKAi~Ep~fs~mYA~LC~~L~~~l~~~~~~~~~~~FR~~LL~rcQ  154 (369)
                      ..+.++|+..+.+++...+  .+...|++||++||+||++||+||+|||+||.+|....++   ..++..||+.||++||
T Consensus        10 ~~~i~~f~~~~q~ll~~~~~~~~~~~l~~vi~lIfeKAi~ep~fs~~YA~LC~~L~~~~~~---~~g~~~Fr~~LLn~cQ   86 (224)
T 2i2o_A           10 DYKIQSFDLETQKLLKTALKDPGSVDLEKVSSVIVDQSLKDQVFSREAGRICYTIVQAEAK---QTNGSVFRRNLLNRLQ   86 (224)
T ss_dssp             CCCCTTSCHHHHHHHHHHHHCGGGSCHHHHHHHHHHHHTTCHHHHHHTHHHHHHHHHHHHH---HHSCCHHHHHHHHHHH
T ss_pred             ccchhccCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHccc---cccchHHHHHHHHHHH
Confidence            3455666666777665433  2445799999999999999999999999999999876432   2235569999999999


Q ss_pred             HHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhc----cC--Cc-HHHHHHHHHHHhcCCC
Q 017537          155 EEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKK----KM--LT-ERIMHECIKKLLGQYE  227 (369)
Q Consensus       155 ~eFe~~~~~~~e~~k~~ee~e~~~s~eE~ee~~~k~krr~lG~i~FIGELfk~----~l--Lt-e~Ii~~cI~~LL~~~~  227 (369)
                      ++|++..                       +.+.+.|+|++|+|+||||||++    ++  ++ ++|||.|+..||++..
T Consensus        87 ~eFe~~e-----------------------e~~~~~k~r~lG~i~FIgELf~~l~~~~~~~~~l~~i~~~cl~~Ll~~~~  143 (224)
T 2i2o_A           87 QEFKARE-----------------------ETRKRSTQEWVCLVSFICNIFDYLKVNNMPMVALVHPVYDCLFRLAQSDA  143 (224)
T ss_dssp             HHHHTHH-----------------------HHHHHCHHHHHHHHHHHHHHHHHSCBTTBCCGGGHHHHHHHHHHHTSHHH
T ss_pred             HHHHChH-----------------------HHHHHHHHHHhHHHHHHHHHHhHhcccCcchHHHHHHHHHHHHHHhccCC
Confidence            9999842                       12346789999999999999999    84  56 8899999999997533


Q ss_pred             CCChhhHHHHHHHHHHHhhhhcCccchHHHHHHHHHHHH-HhhCCCCCHHHHHHHHHHHHHHHcCCccccc
Q 017537          228 NPDEEDVEALCILMSTIGEMIDHPKAKEHMDAYFDRMEK-LSNNMKLSSRVRLMLKDSIELRKNKWQQRRK  297 (369)
Q Consensus       228 ~p~Ee~IE~Lc~LL~tiG~~Ld~~k~k~~md~~F~~L~~-l~~~~~ls~RiRFmI~dlidLR~nnW~~r~~  297 (369)
                      .|+|++|||+|.||++||+.||++. ++.||.||++|++ +++++++|+|+||||+||+|||++||++++.
T Consensus       144 ~p~Ee~lEcl~~LL~tvG~~Ld~~~-~~~md~~f~~l~~~l~~~~~ls~RiRfml~dlieLR~~~W~~~~~  213 (224)
T 2i2o_A          144 LKNEEEVDCLVLQLHRIGDQLEKMN-VQLMDELFNLLRDGFLLQEDLSSMGRLLLLEILEFRAGGWKLSDT  213 (224)
T ss_dssp             HTSHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHTTSCCCHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHHHHHHCCCCCCch
Confidence            5899999999999999999999754 4899999999999 7888899999999999999999999999864

>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14

Probab=99.72  E-value=2.6e-16  Score=147.80  Aligned_cols=210  Identities=15%  Similarity=0.280  Sum_probs=150.7

Q ss_pred             HHHHHHHhh-ccCChhcHHHHHHHHHhcccCChHHHHHHHHHHHHHhhcCCCch--HHHHHHHHHhhhcCCCCCCChhhh
Q 017537           67 WHIECRGDI-GRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFC--EMYANFFYFLAGELPDFSEDNEKI  143 (369)
Q Consensus        67 l~~~Vk~iL-NKLTp~nFd~l~~ql~~l~i~~~e~L~~vI~lIfeKAi~Ep~fs--~mYA~LC~~L~~~l~~~~~~~~~~  143 (369)
                      ++..++.++ -.|++.+.+.+++++..++-++++....+++. |-++- .-.|.  +..|.|...|...-|         
T Consensus         4 ~~~fir~Li~~~L~~~~~~~vlk~lrKl~W~D~e~~~~l~k~-l~~~~-~~ky~nI~~lA~ll~~L~~~~~---------   72 (248)
T 1uw4_B            4 LQEYVRKLLYKDLSKVTTEKVLRQMRKLPWQDQEVKDYVICC-MINIW-NVKYNSIHCVANLLAGLVLYQE---------   72 (248)
T ss_dssp             HHHHHHHHHHTTCSTTSHHHHHHHHHTSCTTSHHHHHHHHHH-HHCGG-GSCGGGHHHHHHHHHHHTTTCH---------
T ss_pred             HHHHHHHHHHHHcccccHHHHHHHHHcCCCCcHHHHHHHHHH-hcchh-hcccchHHHHHHHHHHHHhhCh---------
Confidence            446677777 77888899999999999988888755444444 33332 12333  455677777665432         


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCcHHHHHHHHHHHh
Q 017537          144 TFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLL  223 (369)
Q Consensus       144 ~FR~~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~~s~eE~ee~~~k~krr~lG~i~FIGELfk~~lLte~Ii~~cI~~LL  223 (369)
                      .|--.+++..-++...+....                      ..+.++|.+|.|+||||||+.+|++.++|++|+-.|+
T Consensus        73 ~~~i~vVD~vlE~Ir~gLE~n----------------------~~~~nQrRia~vkyLgELYny~lv~s~vIf~~Ly~li  130 (248)
T 1uw4_B           73 DVGIHVVDGVLEDIRLGMEVN----------------------QPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFT  130 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC----------------------CGGGHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHHHHhcC----------------------cHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence            333444444444443332210                      0134568899999999999999999999999999999


Q ss_pred             cCCCC-----CChhh-------HHHHHHHHHHHhhhhcCccchHHHHHHHHHHHHHh----------hCCCCCHHHHHHH
Q 017537          224 GQYEN-----PDEED-------VEALCILMSTIGEMIDHPKAKEHMDAYFDRMEKLS----------NNMKLSSRVRLML  281 (369)
Q Consensus       224 ~~~~~-----p~Ee~-------IE~Lc~LL~tiG~~Ld~~k~k~~md~~F~~L~~l~----------~~~~ls~RiRFmI  281 (369)
                      . .+.     |++.+       |.++|.||.|||+.++...++..||.++..++...          ++..+|.+++||+
T Consensus       131 ~-fg~~~~~~~~~~D~p~d~FRIrLvCtLL~tcg~~f~~~~~~kkLd~fL~ffQ~Y~~~K~~~~~~~k~~plP~~vef~l  209 (248)
T 1uw4_B          131 S-FGVNPDGSPSSLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLEVWTKDHPFPIDIDYMI  209 (248)
T ss_dssp             H-TTCCTTSCCCSSSCTTCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHHHHHTSTTCCSSSCCCHHHHHHH
T ss_pred             c-CCCCCCCCCCCCCCCccchhHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhhcccccccccCCCCCHHHHHHH
Confidence            7 222     24555       99999999999999998777889999999998863          2457999999999


Q ss_pred             HHHHHH-HHcCCcccccccCCCChHHHHHH
Q 017537          282 KDSIEL-RKNKWQQRRKVEGPKKIEEVHRD  310 (369)
Q Consensus       282 ~dlidL-R~nnW~~r~~~~~pkti~~ih~e  310 (369)
                      +|+++. |.+-|..+.-++++..+++|.++
T Consensus       210 ~D~~~~lrp~~~~~~~~eEa~~~v~~le~~  239 (248)
T 1uw4_B          210 SDTLELLRPKIKLCNSLEESIRQVQDLERE  239 (248)
T ss_dssp             HHHHHHHCTTCCCCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCcccCCHHHHHHHHHHHHHH
Confidence            999999 87767666555666666666444

>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*

Probab=98.97  E-value=8.5e-09  Score=110.88  Aligned_cols=191  Identities=13%  Similarity=0.194  Sum_probs=146.9

Q ss_pred             hHHHHHHHhhccCCh-------hcHHHHHHHHHhcccCChHHHHHHHHHHHHHhhcCCCchHHHHHHHHHhhhcCCCCCC
Q 017537           66 KWHIECRGDIGRLNA-------PNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSE  138 (369)
Q Consensus        66 kl~~~Vk~iLNKLTp-------~nFd~l~~ql~~l~i~~~e~L~~vI~lIfeKAi~Ep~fs~mYA~LC~~L~~~l~~~~~  138 (369)
                      .....+++++-+|+.       +|++.++..|. -++.  +.-..+++.+++-++..|.+++.||.|..-++...|    
T Consensus         7 ~~~~~l~~lI~rlge~~~~s~~~~l~~L~~~l~-~~l~--~~r~~i~~~l~~~~~~~P~Kt~vyAaLVgllN~k~p----   79 (771)
T 1h2v_C            7 ETEDHLESLICKVGEKSACSLESNLEGLAGVLE-ADLP--NYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNY----   79 (771)
T ss_dssp             ---CHHHHHHHTTTSSCSSCHHHHHHHHHHHHH-HTHH--HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCH----
T ss_pred             cHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHH-HHHH--hhHHHHHHHHHHHHHhCCCcchHHHHHHHHHHcCCh----
Confidence            345678888989887       44555555442 1222  334448999999999999999999999999987654    


Q ss_pred             ChhhhHHHHHHHHHHHHHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCcHHHHHHH
Q 017537          139 DNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHEC  218 (369)
Q Consensus       139 ~~~~~~FR~~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~~s~eE~ee~~~k~krr~lG~i~FIGELfk~~lLte~Ii~~c  218 (369)
                           .|-..++.++...|+......                         ..+++...++|||+|++.+++++..+.++
T Consensus        80 -----e~G~~lv~~l~~~f~~~l~~~-------------------------~~~~~k~~lrFLa~L~n~~Vv~~~~il~l  129 (771)
T 1h2v_C           80 -----NFGGEFVEAMIRQLKESLKAN-------------------------NYNEAVYLVRFLSDLVNCHVIAAPSMVAM  129 (771)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHHTT-------------------------CHHHHHHHHHHHHHHHHTTSBCHHHHHHH
T ss_pred             -----hHHHHHHHHHHHHHHHHHHcc-------------------------ChHHHHHHHHHHHHhccCCeecHHHHHHH
Confidence                 566889999998888765421                         13467889999999999999999999999


Q ss_pred             HHHHhcCCC---CCC---hhhHHHHHHHHHHHhhhhcCccchHHHHHHHHHHHHHhhCC-C----------------CCH
Q 017537          219 IKKLLGQYE---NPD---EEDVEALCILMSTIGEMIDHPKAKEHMDAYFDRMEKLSNNM-K----------------LSS  275 (369)
Q Consensus       219 I~~LL~~~~---~p~---Ee~IE~Lc~LL~tiG~~Ld~~k~k~~md~~F~~L~~l~~~~-~----------------ls~  275 (369)
                      +..|+....   .|.   +..+.|++..|.-+|+.|-+ +.+..++.+|++++.+..+. +                ...
T Consensus       130 L~~Ll~~~~e~~~~q~r~D~~v~~vL~~Lp~~G~~L~e-~~~~~l~~lle~~~~yl~~r~~~~~~ll~~~~~~~~~~~~~  208 (771)
T 1h2v_C          130 FENFVSVTQEEDVPQVRRDWYVYAFLSSLPWVGKELYE-KKDAEMDRIFANTESYLKRRQKTHVPMLQVWTADKPHPQEE  208 (771)
T ss_dssp             HHHHHHGGGCSSCCHHHHHHHHHHHHTTHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTCCCTTHHHHCSBCCCSSCCCCB
T ss_pred             HHHHHHhhhhcCCcccchhHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHhcCccchhhhhccccCCCCchhh
Confidence            999997321   122   45789999999999999964 35578999999999866332 2                147


Q ss_pred             HHHHHHHHHHHHHHcCCcc
Q 017537          276 RVRLMLKDSIELRKNKWQQ  294 (369)
Q Consensus       276 RiRFmI~dlidLR~nnW~~  294 (369)
                      ++.+|+..|..+|++||..
T Consensus       209 ~l~~L~~ql~~lr~~~w~~  227 (771)
T 1h2v_C          209 YLDCLWAQIQKLKKDRWQE  227 (771)
T ss_dssp             HHHHHHHHHHHHHHTTTCC
T ss_pred             HHHHHHHHHHHHHHCCCCC
Confidence            9999999999999999975

>4b89_A General negative regulator of transcription subun; 1.50A {Saccharomyces cerevisiae S288C} PDB: 4b8a_A 4b8c_B

Probab=96.13  E-value=0.47  Score=44.10  Aligned_cols=191  Identities=9%  Similarity=0.113  Sum_probs=114.5

Q ss_pred             hHhhhhhHHHHHHHhhccCChhcHHHHHHHHHhcccCChHHHHHHHHH-HHHHhhcCCCchHHHHHHHHHhhhcCCCCCC
Q 017537           60 KRMRNLKWHIECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQ-IFDKALMEPTFCEMYANFFYFLAGELPDFSE  138 (369)
Q Consensus        60 ~~~~~~kl~~~Vk~iLNKLTp~nFd~l~~ql~~l~i~~~e~L~~vI~l-IfeKAi~Ep~fs~mYA~LC~~L~~~l~~~~~  138 (369)
                      .+.+...+.++|..++|.||++|++.-++++.++-  +++...=++.- |.++|..||+|..+|.+|...+...      
T Consensus        27 ~e~P~~~v~dki~Fi~NNls~~Nl~~k~~el~~~l--~~~y~~WFA~YLV~~Ra~~EpN~H~lY~~~l~~l~~~------   98 (249)
T 4b89_A           27 QEGAPKDVVEKVLFVLNNVTLANLNNKVDELKKSL--TPNYFSWFSTYLVTQRAKTEPNYHDLYSKVIVAMGSG------   98 (249)
T ss_dssp             CCCCCHHHHHHHHHHHHHCCTTTHHHHHHHHHHHC--CGGGHHHHHHHHHHHTTTTCGGGHHHHHHHHHHHTCH------
T ss_pred             CCCcCHHHHhhhhhhhhcCChHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHhCCH------
Confidence            34556667789999999999999999999998753  34455556665 6679999999999999999998532      


Q ss_pred             ChhhhHHHHHHHHHHHHHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhcc---CCcHHHH
Q 017537          139 DNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKK---MLTERIM  215 (369)
Q Consensus       139 ~~~~~~FR~~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~~s~eE~ee~~~k~krr~lG~i~FIGELfk~~---lLte~Ii  215 (369)
                           .+-+.+++..   |.....-   .+. +   +...+  |        |...-+.=.++|-|-.-.   +.+.   
T Consensus        99 -----~L~~~vl~~T---~~~i~~L---L~~-~---~i~~~--e--------Rs~LKNLG~WLG~iTLarNkPI~~~---  150 (249)
T 4b89_A           99 -----LLHQFMVNVT---LRQLFVL---LST-K---DEQAI--D--------KKHLKNLASWLGCITLALNKPIKHK---  150 (249)
T ss_dssp             -----HHHHHHHHHH---HHHHHHH---HTB-S---CGGGS--C--------HHHHHHHHHHHHHHTGGGTCCCCTT---
T ss_pred             -----HHHHHHHHHH---HHHHHHH---hhh-c---ccChH--H--------HHHHHHHHHHHhHHHHhcCCCchhc---
Confidence                 2223333221   1111110   000 0   00001  1        111222334677776543   1111   


Q ss_pred             HHHHHHHhcC-CC-CCChhhHHHHHHHHHHHhhh-hcCccchHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Q 017537          216 HECIKKLLGQ-YE-NPDEEDVEALCILMSTIGEM-IDHPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIEL  287 (369)
Q Consensus       216 ~~cI~~LL~~-~~-~p~Ee~IE~Lc~LL~tiG~~-Ld~~k~k~~md~~F~~L~~l~~~~~ls~RiRFmI~dlidL  287 (369)
                      +-.++.||-+ ++ ..=+.-|-.+|++|..+-.. .-.|. -+++-.+++-|.++-..+.+-.-++|-|+-+...
T Consensus       151 ~ld~K~LL~eay~~g~L~~vIPFVcKvLe~~k~SkiFkPP-NPWt~~IL~lL~Ely~~~~LKlnlkFEIEvL~k~  224 (249)
T 4b89_A          151 NIAFREMLIEAYKENRLEIVVPFVTKILQRASESKIFKPP-NPWTVGILKLLIELNEKANWKLSLTFEVEVLLKS  224 (249)
T ss_dssp             TBCHHHHHHHHHHHTCHHHHHHHHHHHHGGGTTCSSSSTT-CHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHcCCeEEEeeHHHHHHHhcccCCccCCC-CchHHHHHHHHHHHHhCcchhHhHHHHHHHHHHH
Confidence            1112222211 00 11234577778888877422 22232 3799999999999988888889999999998863

>4gmj_A CCR4-NOT transcription complex subunit 1; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens} PDB: 4gml_A

Probab=94.98  E-value=2  Score=39.42  Aligned_cols=189  Identities=16%  Similarity=0.187  Sum_probs=107.7

Q ss_pred             hhHHHHHHHhhccCChhcHHHHHHHHHhcccCChHHHHHHHH-HHHHHhhcCCCchHHHHHHHHHhhhcCCCCCCChhhh
Q 017537           65 LKWHIECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVS-QIFDKALMEPTFCEMYANFFYFLAGELPDFSEDNEKI  143 (369)
Q Consensus        65 ~kl~~~Vk~iLNKLTp~nFd~l~~ql~~l~i~~~e~L~~vI~-lIfeKAi~Ep~fs~mYA~LC~~L~~~l~~~~~~~~~~  143 (369)
                      ..+.++|..++|.||++|++.-++++.++-  +++...=++. +|.++|-.||+|..+|++|...+...           
T Consensus         5 e~v~dki~Fi~NNls~~N~~~k~~elk~~l--~~~y~~Wfa~YLV~~Ras~EpN~h~lY~~fl~~l~~~-----------   71 (229)
T 4gmj_A            5 ENIQEKIAFIFNNLSQSNMTQKVEELKETV--KEEFMPWVSQYLVMKRVSIEPNFHSLYSNFLDTLKNP-----------   71 (229)
T ss_dssp             HHHHHHHHHHHHSCCSSTHHHHHHHHHHHS--CGGGHHHHHHHHHHHTTTTCGGGHHHHHHHHHHHTCH-----------
T ss_pred             HHhhhhheeehhcCCHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHhChH-----------
Confidence            345678999999999999999999998742  2333444553 46777888999999999999987431           


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCcHHHHHHHHHHHh
Q 017537          144 TFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLL  223 (369)
Q Consensus       144 ~FR~~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~~s~eE~ee~~~k~krr~lG~i~FIGELfk~~lLte~Ii~~cI~~LL  223 (369)
                      .|-+.+++..-.........    ++.      ..+..|    +...  +-+|  .++|.|-.-.=-+...-+-.++.||
T Consensus        72 ~l~~~vl~~T~~~i~~LL~s----~~~------~~~~~e----R~~L--KNLG--~WLG~lTLarnkPI~~~~l~~K~LL  133 (229)
T 4gmj_A           72 EFNKMVLNETYRNIKVLLTS----DKA------AANFSD----RSLL--KNLG--HWLGMITLAKNKPILHTDLDVKSLL  133 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHTS----CCC------TTCHHH----HHHH--HHHH--HHHHHHTGGGTCCCCTTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhh----ccc------ccchHH----HHHH--HHHH--HHHHHHHHccCCCchhcccCHHHHH
Confidence            23333333221111111110    000      011112    1112  2234  3677776543110000011122232


Q ss_pred             cC-CC-CC--ChhhHHHHHHHHHHHhh--hhcCccchHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 017537          224 GQ-YE-NP--DEEDVEALCILMSTIGE--MIDHPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIE  286 (369)
Q Consensus       224 ~~-~~-~p--~Ee~IE~Lc~LL~tiG~--~Ld~~k~k~~md~~F~~L~~l~~~~~ls~RiRFmI~dlid  286 (369)
                      -+ ++ +.  =.--|-.+|++|..+-+  .+. | .-+++-.+++-|.++-.-+.+..-++|=|+-+..
T Consensus       134 ~eay~~g~~rL~~viPFVcKvLe~~~~S~iFk-P-PNPW~~~IL~lL~Ely~~~~lKlnlkFEIEvLfk  200 (229)
T 4gmj_A          134 LEAYVKGQQELLYVVPFVAKVLESSIRSVVFR-P-PNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCK  200 (229)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHTTTTCTTTS-T-TCHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHH
T ss_pred             HHHHHCCCceEEEeehhHHHHHHhcccCCcCC-C-CChhHHHHHHHHHHHHhCccchhhHHHHHHHHHH
Confidence            10 00 00  01145666777777642  332 3 2378999999999998888888999999998876

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=85.63  E-value=11  Score=38.24  Aligned_cols=158  Identities=16%  Similarity=0.212  Sum_probs=101.9

Q ss_pred             HHHHHHHhhccCChhcHHHHHHHHHhccc-CChHHHHHHHHHHHHHhhcCCCch----HHHHHHHHHhhhcCCCCCCChh
Q 017537           67 WHIECRGDIGRLNAPNFKKLFEQVKAVNI-DNAVTLAGVVSQIFDKALMEPTFC----EMYANFFYFLAGELPDFSEDNE  141 (369)
Q Consensus        67 l~~~Vk~iLNKLTp~nFd~l~~ql~~l~i-~~~e~L~~vI~lIfeKAi~Ep~fs----~mYA~LC~~L~~~l~~~~~~~~  141 (369)
                      +...++.+|-.+|.+.|+-+.+=+-.+.+ .+.....+++++|.++|=-++.|.    ....++...+.+.+|-+.....
T Consensus       178 i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~  257 (507)
T 3u0r_A          178 ILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVH  257 (507)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBC
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCC
Confidence            45788999999999999988866656654 466778899999999986555544    6778888888888887765445


Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhccC-Cc--HHHHHHH
Q 017537          142 KITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKM-LT--ERIMHEC  218 (369)
Q Consensus       142 ~~~FR~~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~~s~eE~ee~~~k~krr~lG~i~FIGELfk~~l-Lt--e~Ii~~c  218 (369)
                      .+.|-.++.++.--.|.....       .. ++      +          .+.+-..+.++|+--+-- +.  ...+-.+
T Consensus       258 StkFv~y~~~kIlP~l~~L~e-------~~-~~------~----------~~kL~LLK~lAE~s~~~~~~e~a~~~l~~i  313 (507)
T 3u0r_A          258 STRFVTYFCEQVLPNLGTLTT-------PV-EG------L----------DIQLEVLKLLAEMSSFCGDMEKLETNLRKL  313 (507)
T ss_dssp             CHHHHHHHHHHTGGGTTCCCC-------C---C------C----------CHHHHHHHHHHHHHTTCCCCTTHHHHHHHH
T ss_pred             hHHHHHHHHHhhccchhhccc-------cc-cc------h----------HHHHHHHHHHHHHccCCCccchHHHHHHHH
Confidence            566766665432222221100       00 00      0          024567888899887643 33  2244445


Q ss_pred             HHHHhcCCCC-CCh----------------hhHHHHHHHHHHHhhhh
Q 017537          219 IKKLLGQYEN-PDE----------------EDVEALCILMSTIGEMI  248 (369)
Q Consensus       219 I~~LL~~~~~-p~E----------------e~IE~Lc~LL~tiG~~L  248 (369)
                      ...|+...+. |+|                -.+|||.-.+.+.|+..
T Consensus       314 y~~L~~ymP~~p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~L~~k~  360 (507)
T 3u0r_A          314 FDKLLEYMPLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLGRKL  360 (507)
T ss_dssp             HHHHHTTSCCCC--------------CCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHCCCCcccccccccccccCcccchhHHHHHHHHHHHHhhhC
Confidence            5555543222 221                14899999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	369
d1hu3a_	243	a.118.1.14 (A:) Eukaryotic initiation factor eIF4G	1e-55
d1uw4b_	248	a.118.1.14 (B:) Regulator of nonsense transcripts	3e-38
d1h2vc1	262	a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-bin	8e-05

>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Length = 243

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Eukaryotic initiation factor eIF4G
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  180 bits (457), Expect = 1e-55
 Identities = 96/231 (41%), Positives = 139/231 (60%), Gaps = 11/231 (4%)

Query: 70  ECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFL 129
           + R  + +L    F +L +QV  + +D    L GV+  +F+KA+ EP+F   YAN    L
Sbjct: 14  KVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCL 73

Query: 130 AGELPDFSE-DNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGE-------IKQTEE 181
                  ++     + F++LLLN+CQ+EFE+ + + +   K  KE E         +  +
Sbjct: 74  VTLKVPMADKPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHD 133

Query: 182 EREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILM 241
           E EE + KARRR +GNI+ IGEL+K KMLTE IMH+C+ KLL   +N DEE +E LC L+
Sbjct: 134 ELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLL---KNHDEESLECLCRLL 190

Query: 242 STIGEMIDHPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKW 292
           +TIG+ +D  KAK  MD YF++MEK+    K SSR+R ML+D I+LR   W
Sbjct: 191 TTIGKDLDFEKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCNW 241

>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 248

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Regulator of nonsense transcripts 2, UPF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  135 bits (340), Expect = 3e-38
 Identities = 33/264 (12%), Positives = 86/264 (32%), Gaps = 53/264 (20%)

Query: 75  IGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELP 134
              L+    +K+  Q++ +   +      V+  + +   ++       AN    L     
Sbjct: 13  YKDLSKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQE 72

Query: 135 DFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRW 194
           D             +++   E+   G                          + K  +R 
Sbjct: 73  DVGIH---------VVDGVLEDIRLGME----------------------VNQPKFNQRR 101

Query: 195 LGNIRLIGELYKKKMLTERIMHECIKKLLGQYENP-----------DEEDVEALCILMST 243
           + + + +GELY  +M+   ++   +        NP               +  +C ++ T
Sbjct: 102 ISSAKFLGELYNYRMVESAVIFRTLYSFTSFGVNPDGSPSSLDPPEHLFRIRLVCTILDT 161

Query: 244 IGEMIDHPKAKEHMDAYF----------DRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQ 293
            G+  D   +K  +D +             +E  + +      +  M+ D++EL + K +
Sbjct: 162 CGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLEVWTKDHPFPIDIDYMISDTLELLRPKIK 221

Query: 294 QRRKV-EGPKKIEEVHRDAAQERQ 316
               + E  ++++++ R+   +  
Sbjct: 222 LCNSLEESIRQVQDLEREFLIKLG 245

>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: CBP80, 80KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (97), Expect = 8e-05
 Identities = 28/249 (11%), Positives = 68/249 (27%), Gaps = 67/249 (26%)

Query: 75  IGRLNAPNFKKLFEQVKAVNIDNAVTLAG-VVSQIFDKALMEPTFCEMYANFFYFLAGEL 133
           +G  +A + +   E +  V   +       ++  +   A + P    +Y      L    
Sbjct: 10  VGEKSACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARN 69

Query: 134 PDFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRR 193
            +F             +     +            ++ K     +               
Sbjct: 70  YNFGG---------EFVEAMIRQL----------KESLKANNYNEA-------------- 96

Query: 194 WLGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDV-------------EALCIL 240
            +  +R + +L    ++    M    +  +       EEDV              +L  +
Sbjct: 97  -VYLVRFLSDLVNCHVIAAPSMVAMFENFV---SVTQEEDVPQVRRDWYVYAFLSSLPWV 152

Query: 241 MSTIGEMIDHPKAKEHM----DAYFDRMEKLSNNM----------KLSSRVRLMLKDSIE 286
              + E        + +    ++Y  R +K    M               +  +     +
Sbjct: 153 GKELYE--KKDAEMDRIFANTESYLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWAQIQK 210

Query: 287 LRKNKWQQR 295
           L+K++WQ+R
Sbjct: 211 LKKDRWQER 219

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	369
d1hu3a_	243	Eukaryotic initiation factor eIF4G {Human (Homo sa	100.0
d1uw4b_	248	Regulator of nonsense transcripts 2, UPF2 {Human (	100.0
d1h2vc1	262	CBP80, 80KDa nuclear cap-binding protein {Human (H	99.31

>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Eukaryotic initiation factor eIF4G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-48  Score=362.01  Aligned_cols=232  Identities=41%  Similarity=0.695  Sum_probs=190.1

Q ss_pred             hHhhhhhHHHHHHHhhccCChhcHHHHHHHHHhcccCChHHHHHHHHHHHHHhhcCCCchHHHHHHHHHhhhcCCCCCC-
Q 017537           60 KRMRNLKWHIECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSE-  138 (369)
Q Consensus        60 ~~~~~~kl~~~Vk~iLNKLTp~nFd~l~~ql~~l~i~~~e~L~~vI~lIfeKAi~Ep~fs~mYA~LC~~L~~~l~~~~~-  138 (369)
                      ++.+.++++|+|+++|||||++||+.++++|.++++++.+.++.+++.||+||+.||+|+++||+||..|....++... 
T Consensus         4 ~~~~~~~l~r~v~~lLNKLt~~n~~~i~~ei~~l~~~~~~~l~~~v~~I~~kai~e~~f~~~YA~Lc~~l~~~~~~~~~~   83 (243)
T d1hu3a_           4 ENIKTQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMADK   83 (243)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCCCC----
T ss_pred             hHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHhcCccccc
Confidence            4567788999999999999999999999999999999999999999999999999999999999999999987766532 


Q ss_pred             ChhhhHHHHHHHHHHHHHHHhhHHHHHHhhhhc-------chhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCc
Q 017537          139 DNEKITFKRLLLNKCQEEFERGEREQEEANKAD-------KEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLT  211 (369)
Q Consensus       139 ~~~~~~FR~~LL~rcQ~eFe~~~~~~~e~~k~~-------ee~e~~~s~eE~ee~~~k~krr~lG~i~FIGELfk~~lLt  211 (369)
                      .+++..||+.||++||++|++............       ...+......|.++.+.+.|++.+|+++||||||+.++++
T Consensus        84 ~~~~~~F~~~Ll~~~q~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~k~~~~g~i~figeLy~~~~v~  163 (243)
T d1hu3a_          84 PGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLT  163 (243)
T ss_dssp             -----CHHHHHHHHHHHHHHHHTC------------------------------CCSSHHHHHHHHHHHHHHHHTTTCSC
T ss_pred             cccchHHHHHHHHHHHHHHHHhhhhhhhhHhhhcccccccchHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHccccch
Confidence            346778999999999999998764321111100       0011112233445556678889999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHhhhhcCccchHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHcC
Q 017537          212 ERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNK  291 (369)
Q Consensus       212 e~Ii~~cI~~LL~~~~~p~Ee~IE~Lc~LL~tiG~~Ld~~k~k~~md~~F~~L~~l~~~~~ls~RiRFmI~dlidLR~nn  291 (369)
                      .+++++|+..|+.   +|+|++|||+|.||+++|+.|+.+..++.||.||++++.+..++++|+|+||||+|++|||++|
T Consensus       164 ~~~i~~~l~~Ll~---~~~e~~ie~l~~lL~~~G~~L~~~~~~~~~~~~~~~l~~~~~~~~~s~Rirfml~~l~elR~~~  240 (243)
T d1hu3a_         164 EAIMHDCVVKLLK---NHDEESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCN  240 (243)
T ss_dssp             HHHHHHHHHHHHH---SCSHHHHHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcC
Confidence            9999999999998   6999999999999999999999877788999999999999999999999999999999999999


Q ss_pred             Ccc
Q 017537          292 WQQ  294 (369)
Q Consensus       292 W~~  294 (369)
                      |+.
T Consensus       241 W~s  243 (243)
T d1hu3a_         241 WVS  243 (243)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            984

>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Regulator of nonsense transcripts 2, UPF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-36  Score=280.28  Aligned_cols=217  Identities=14%  Similarity=0.240  Sum_probs=182.7

Q ss_pred             hhHHHHHHHhhccCChhcHHHHHHHHHhcccCChHHHHHHHHHHHHHhhcCCCchHHHHHHHHHhhhcCCCCCCChhhhH
Q 017537           65 LKWHIECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSEDNEKIT  144 (369)
Q Consensus        65 ~kl~~~Vk~iLNKLTp~nFd~l~~ql~~l~i~~~e~L~~vI~lIfeKAi~Ep~fs~mYA~LC~~L~~~l~~~~~~~~~~~  144 (369)
                      +...|++  |+|+||+.||+.++.++..++++|++....+++.||+++..++.|+++||.||+.|....|         .
T Consensus         5 ~~flr~l--i~n~Ls~~n~~~i~~~i~kl~~~n~e~~~~li~~i~~~~~~~~~~i~~yA~l~a~L~~~~~---------~   73 (248)
T d1uw4b_           5 QEYVRKL--LYKDLSKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQE---------D   73 (248)
T ss_dssp             HHHHHHH--HHTTCSTTSHHHHHHHHHTSCTTSHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHHHTTTCH---------H
T ss_pred             HHHHHHH--HHhhCCHhHHHHHHHHHHHCCCCCHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHHHHHhH---------H
Confidence            3334444  7899999999999999999999999999999999999999999999999999999987543         5


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCcHHHHHHHHHHHhc
Q 017537          145 FKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLG  224 (369)
Q Consensus       145 FR~~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~~s~eE~ee~~~k~krr~lG~i~FIGELfk~~lLte~Ii~~cI~~LL~  224 (369)
                      |...++++|+++|+.+.....                      .+.++|.+|+|+||||||+.++++.++|++|+..|+.
T Consensus        74 f~~~~id~l~e~f~~~~e~~~----------------------~~~~~r~~~~v~figeLy~~~~v~~~~i~~~l~~Ll~  131 (248)
T d1uw4b_          74 VGIHVVDGVLEDIRLGMEVNQ----------------------PKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTS  131 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCC----------------------GGGHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhh----------------------HHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Confidence            889999999999998764310                      1235678999999999999999999999999999996


Q ss_pred             CCC---------CCCh--hhHHHHHHHHHHHhhhhcCccchHHHHHHHHHHHH----------HhhCCCCCHHHHHHHHH
Q 017537          225 QYE---------NPDE--EDVEALCILMSTIGEMIDHPKAKEHMDAYFDRMEK----------LSNNMKLSSRVRLMLKD  283 (369)
Q Consensus       225 ~~~---------~p~E--e~IE~Lc~LL~tiG~~Ld~~k~k~~md~~F~~L~~----------l~~~~~ls~RiRFmI~d  283 (369)
                      ...         +|.+  ..|||+|.||.+||+.+|.++.+..|+.+|..++.          +..+.++|+||||||+|
T Consensus       132 ~~~~~~~~~~~~d~~~d~~rIe~l~~lL~t~G~~l~~~~~~~~l~~~~~~fq~y~~~~~~~~~~~~~~~lp~ri~f~i~d  211 (248)
T d1uw4b_         132 FGVNPDGSPSSLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLEVWTKDHPFPIDIDYMISD  211 (248)
T ss_dssp             TTCCTTSCCCSSSCTTCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHHHHHTSTTCCSSSCCCHHHHHHHHH
T ss_pred             cCCCcccccccCCCCcchhHHHHHHHHHHHHhHHhcCccchhhHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence            321         2222  23999999999999999987777888887765543          23356799999999999


Q ss_pred             HHHHHHcCCcccc-cccCCCChHHHHHHHHHH
Q 017537          284 SIELRKNKWQQRR-KVEGPKKIEEVHRDAAQE  314 (369)
Q Consensus       284 lidLR~nnW~~r~-~~~~pkti~~ih~ea~~e  314 (369)
                      ++|+|++||+... .+++|+++++||++...+
T Consensus       212 ll~lr~~~wk~~~~~~E~~~~l~ei~k~~~~~  243 (248)
T d1uw4b_         212 TLELLRPKIKLCNSLEESIRQVQDLEREFLIK  243 (248)
T ss_dssp             HHHHHCTTCCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCcCCChhhhHHHHHHHHHHHHHh
Confidence            9999999997655 469999999999998654

>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: CBP80, 80KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.2e-11  Score=115.03  Aligned_cols=191  Identities=13%  Similarity=0.193  Sum_probs=144.4

Q ss_pred             HHHHhhccCChhcHHHHHHHHHhcc----cCChHHHHHHHHHHHHHhhcCCCchHHHHHHHHHhhhcCCCCCCChhhhHH
Q 017537           70 ECRGDIGRLNAPNFKKLFEQVKAVN----IDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSEDNEKITF  145 (369)
Q Consensus        70 ~Vk~iLNKLTp~nFd~l~~ql~~l~----i~~~e~L~~vI~lIfeKAi~Ep~fs~mYA~LC~~L~~~l~~~~~~~~~~~F  145 (369)
                      .+++++||++..|..++.+++..+.    -+-.+.-..+++.+++-++..|.++.+||.|+.-++..         ...|
T Consensus         2 rl~~LI~rige~~~~s~~~~ie~L~~~l~~~l~~~~~~il~~l~~~~~~~P~k~~~yA~Lv~llN~~---------~~e~   72 (262)
T d1h2vc1           2 HLESLICKVGEKSACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNAR---------NYNF   72 (262)
T ss_dssp             HHHHHHHTTTSSCSSCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTT---------CHHH
T ss_pred             hHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHccC---------cHHH
Confidence            5789999998776666666664442    12234556689999999999999999999999888654         2368


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCcHHHHHHHHHHHhcC
Q 017537          146 KRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQ  225 (369)
Q Consensus       146 R~~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~~s~eE~ee~~~k~krr~lG~i~FIGELfk~~lLte~Ii~~cI~~LL~~  225 (369)
                      ...++.++...|++.....                         ..+++.+.++|||+||+.++++...+.+++..|++.
T Consensus        73 g~~~l~~~~~~f~~~l~~~-------------------------~~~~~~~llrFla~L~n~~Vv~~~~i~~ll~~ll~~  127 (262)
T d1h2vc1          73 GGEFVEAMIRQLKESLKAN-------------------------NYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSV  127 (262)
T ss_dssp             HHHHHHHHHHHHHHHHHTT-------------------------CHHHHHHHHHHHHHHHHTTSBCHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHHHHhC-------------------------CHHHHHHHHHHHHHHccCCCCcHhHHHHHHHHHHHH
Confidence            8999999999999876421                         123577899999999999999999999999999963


Q ss_pred             C---CCCC---hhhHHHHHHHHHHHhhhhcCccchHHHHHHHHHHHHHhhCC-----------------CCCHHHHHHHH
Q 017537          226 Y---ENPD---EEDVEALCILMSTIGEMIDHPKAKEHMDAYFDRMEKLSNNM-----------------KLSSRVRLMLK  282 (369)
Q Consensus       226 ~---~~p~---Ee~IE~Lc~LL~tiG~~Ld~~k~k~~md~~F~~L~~l~~~~-----------------~ls~RiRFmI~  282 (369)
                      .   +.|.   |.-+.|+...|--+|+.|-+. .+..++.+++.++..+.+.                 .....+-.+..
T Consensus       128 ~~e~~~~~~~~d~~~~~vL~~LP~~g~~l~~~-~~~~~~~ll~~i~~y~~~r~~~~~~ll~~~~~~~~~~~~~~l~~l~~  206 (262)
T d1h2vc1         128 TQEEDVPQVRRDWYVYAFLSSLPWVGKELYEK-KDAEMDRIFANTESYLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWA  206 (262)
T ss_dssp             GGCSSCCHHHHHHHHHHHHTTHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTCCCTTHHHHCSBCCCSSCCCCBHHHHHHH
T ss_pred             HhhccCCchhHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHhccccchhhhhccccCCCCcHHHHHHHHHH
Confidence            2   1121   234777777777899988642 3467888888887754321                 12368888999


Q ss_pred             HHHHHHHcCCccc
Q 017537          283 DSIELRKNKWQQR  295 (369)
Q Consensus       283 dlidLR~nnW~~r  295 (369)
                      .+..+|+++|..+
T Consensus       207 qi~~l~~~~w~~~  219 (262)
T d1h2vc1         207 QIQKLKKDRWQER  219 (262)
T ss_dssp             HHHHHHHTTTCCS
T ss_pred             HHHHHHhcCCchh
Confidence            9999999999864