Citrus Sinensis ID: 017542

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
Protein Sequence
MIMAGCESLRCFPQNIHFISSIKIDCYKCVNLREFPRISGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPELPLLLVMLGASDCKRLQFLPELTSCLEELDASILQALSNRTGERLSKHMSPVQLIFANCLKLNESIWADLQKRIRHMIIASLRLFYEKVCNSIYFPLSLP
Secondary Structure (PSIPRED)
cccccccccccccccccccccccEEccccccccccccccccccEEEccccccccccccccccccccEEEcccccccccccHHHcccccccEEccccccccccccHHHHccccccEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccEEEccccccccccccccccccccEEEccccccccccccccccccccEEEccccccccccHHHcccccccEEcccccccccccccccccccEEcccccccccccccccccccccccccccccccccHHHHcccccccEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHccccHEEEEcccccccccccHHcccccEEEccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEccccccccccHHHHccccccEEEccccccccccHHHcccccccEEEccccccccccHHHcccccccEEEccccccccccHHHHccccccEEEcccccccccccHHHccccHEEcccccccccccHHHcccHcccEEEcccccccccccccccccccEEEcccccccccccHHHcHHHHHHccccHHHHHHccccccccEccccc
Coil and Loop (DISEMBL)
mimagceslrcfpqnihFISSIKidcykcvnlrefprisgnvVELNlmctpieevplsieclpnletLEMSFCNSLKRLSTSIcklkslrsldlsycinLESFPEILEKMELLEEINLEEasnikelpssieNLEGlkqlkltgctklgslpeslgnLKSLERLHAGLlaipqapssivdlnkletlslfecrglvlppllsglsslkklelgdceimeippdigclssleslnlsgnnieslpTSISQLSRLRWLYLVNCvklqslpelpLLLVMLGAsdckrlqfLPELTSCLEELDASILQALSNRTgerlskhmspVQLIFANCLKLNESIWADLQKRIRHMIIASLRLFYEKVCNSiyfplslp
Flexible Loop (DISEMBL)
MIMAGCESLRCFPQNIHFISSIKIDCYKCVNLREFPRISGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPELPLLLVMLGASDCKRLQFLPELTSCLEELDASILQALSNRTGERLSKHMSPVQLIFANCLKLNESIWADLQKRIRHMIIASLRLFYEKVCNSIYFPLSLP
Low Complexity Region (SEG)
MIMAGCESLRCFPQNIHFISSIKIDCYKCVNLREFPRISGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPeilekmelleeinleeASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRglvlppllsglsslkklelgDCEIMEIPPDIGClssleslnlsgnnieslPTSISQLSRLRWLYLVNCVKlqslpelplllvmlGASDCKRLQFLPELTSCLEELDASILQALSNRTGERLSKHMSPVQLIFANCLKLNESIWADLQKRIRHMIIASLRLFYEKVCNSIYFPLSLP
Disordered region (IsUnstruct)
****GCESLRCFPQNIHFISSIKIDCYKCVNLREFPRISGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLE*************NLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPELPLLLVMLGASDCKRLQFLPELTSC**************************VQLIFANCLKLNESIWADLQKRIRHMIIASLRLFYEKVCNSIYFPL***
Disordered Region (DISOPRED)
MIMAGCESLRCFPQNIHFISSIKIDCYKCVNLREFPRISGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPELPLLLVMLGASDCKRLQFLPELTSCLEELDASILQALSNRT*****KHMSPVQLIFANCLKLNESIWADLQKRIRHMIIASLRLFYEKVCNSIYFPLSLP
Disordered Region (DISEMBL)
MIMAGCESLRCFPQNIHFISSIKIDCYKCVNLREFPRISGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPELPLLLVMLGASDCKRLQFLPELTSCLEELDASILQALSNRTGERLSKHMSPVQLIFANCLKLNESIWADLQKRIRHMIIASLRLFYEKVCNSIYFPLSLP
Disordered Region (DISPRO)
*IMAGCESLRCFPQNIHFISSIKIDCYKCVNLREFPRISGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPELPLLLVMLGASDCKRLQFLPELTSCLEELDASILQALSNRTGERLSKHMSPVQLIFANCLKLNESIWADLQKRIRHMIIASLRLFYEKVCNSIYFPLSLP
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIMAGCESLRCFPQNIHFISSIKIDCYKCVNLREFPRISGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPELPLLLVMLGASDCKRLQFLPELTSCLEELDASILQALSNRTGERLSKHMSPVQLIFANCLKLNESIWADLQKRIRHMIIASLRLFYEKVCNSIYFPLSLP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	369	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.799	0.257	0.351	9e-30
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.712	0.202	0.341	1e-24
Q9Y4C4	1052	Malignant fibrous histioc	yes	no	0.558	0.195	0.339	3e-16
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.371	0.072	0.420	9e-16
Q7KRY7	1851	Protein lap4 OS=Drosophil	no	no	0.669	0.133	0.308	1e-15
P0CB16	1201	Putative disease resistan	no	no	0.639	0.196	0.325	3e-15
Q9RBS2	1024	Protein PopC OS=Ralstonia	yes	no	0.707	0.254	0.276	9e-15
A4IIK1	997	Malignant fibrous histioc	yes	no	0.666	0.246	0.323	4e-14
Q3V1N1	1048	Malignant fibrous histioc	yes	no	0.558	0.196	0.334	1e-13
Q14160	1630	Protein scribble homolog	no	no	0.623	0.141	0.307	6e-13

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  131 bits (329), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 117/333 (35%), Positives = 168/333 (50%), Gaps = 38/333 (11%)

Query: 12  FPQNIHFISSIKIDCYKCVNLREFPRISG--NVVELNLM-CTPIEEVPLSIECLPNLETL 68
           + +  H  S  +ID      L   P  +G  N+  +NL  C+ +EEV  S+ C   +  L
Sbjct: 612 WTETKHLPSLRRIDLSWSKRLTRTPDFTGMPNLEYVNLYQCSNLEEVHHSLGCCSKVIGL 671

Query: 69  EMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELP 128
            ++ C SLKR       ++SL  L L  C +LE  PEI  +M+   +I+++  S I+ELP
Sbjct: 672 YLNDCKSLKRFPC--VNVESLEYLGLRSCDSLEKLPEIYGRMKPEIQIHMQ-GSGIRELP 728

Query: 129 SSIEN-------------------------LEGLKQLKLTGCTKLGSLPESLGNLKSLER 163
           SSI                           L+ L  L ++GC+KL SLPE +G+L +L  
Sbjct: 729 SSIFQYKTHVTKLLLWNMKNLVALPSSICRLKSLVSLSVSGCSKLESLPEEIGDLDNLRV 788

Query: 164 LHAGLLAIPQAPSSIVDLNKLETLSLFECRGLV---LPPLLSGLSSLKKLELGDCEIME- 219
             A    I + PSSI+ LNKL  L     +  V    PP+  GL SL+ L L  C +++ 
Sbjct: 789 FDASDTLILRPPSSIIRLNKLIILMFRGFKDGVHFEFPPVAEGLHSLEYLNLSYCNLIDG 848

Query: 220 -IPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPELPLLLVMLG 278
            +P +IG LSSL+ L+LS NN E LP+SI+QL  L+ L L +C +L  LPELP  L  L 
Sbjct: 849 GLPEEIGSLSSLKKLDLSRNNFEHLPSSIAQLGALQSLDLKDCQRLTQLPELPPELNELH 908

Query: 279 ASDCK-RLQFLPELTSCLEELDASILQALSNRT 310
             DC   L+F+  L +  ++L    L    N T
Sbjct: 909 V-DCHMALKFIHYLVTKRKKLHRVKLDDAHNDT 940

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score =  114 bits (286), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 101/296 (34%), Positives = 144/296 (48%), Gaps = 33/296 (11%)

Query: 3    MAGCESLRCFPQNIHFISSIKIDCYKCVNLREFPRISGNVVELNLMCTPIEEVPLSIECL 62
            M  C  L   P +++  S   +D   C +LR FP IS N+V L L  T IEE+P +I  L
Sbjct: 827  MKECTGLEVLPTDVNLSSLETLDLSGCSSLRSFPLISTNIVWLYLENTAIEEIPSTIGNL 886

Query: 63   PNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEAS 122
              L  LEM  C  L+ L T +  L SL +LDLS C +L SFP I E ++ L      E +
Sbjct: 887  HRLVRLEMKKCTGLEVLPTDV-NLSSLETLDLSGCSSLRSFPLISESIKWL----YLENT 941

Query: 123  NIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLN 182
             I+E+P  +     LK LKL  C  L +LP ++GNL+                       
Sbjct: 942  AIEEIP-DLSKATNLKNLKLNNCKSLVTLPTTIGNLQ----------------------- 977

Query: 183  KLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIES 242
            KL +  + EC GL + P+   LSSL  L+L  C  +   P I   +++  L L    IE 
Sbjct: 978  KLVSFEMKECTGLEVLPIDVNLSSLMILDLSGCSSLRTFPLIS--TNIVWLYLENTAIEE 1035

Query: 243  LPTSISQLSRLRWLYLVNCVKLQSLPELPLL--LVMLGASDCKRLQFLPELTSCLE 296
            +P++I  L RL  L +  C  L+ LP    L  L++L  S C  L+  P +++ +E
Sbjct: 1036 IPSTIGNLHRLVKLEMKECTGLEVLPTDVNLSSLMILDLSGCSSLRTFPLISTRIE 1091

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9Y4C4|MFHA1_HUMAN Malignant fibrous histiocytoma-amplified sequence 1 OS=Homo sapiens GN=MFHAS1 PE=1 SV=2

 Score = 86.3 bits (212), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/233 (33%), Positives = 117/233 (50%), Gaps = 27/233 (11%)

Query: 44  ELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESF 103
           +LNL    +  +P  +  L +LE L++SF N L  L  S+  L  LR+LD+ +   L +F
Sbjct: 139 KLNLSHNQLPALPAQLGALAHLEELDVSF-NRLAHLPDSLSCLSRLRTLDVDHN-QLTAF 196

Query: 104 PEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLER 163
           P  L ++  LEE+++  ++ ++ LP  I  L  LK L L+G  +LG+LP     L SLE 
Sbjct: 197 PRQLLQLVALEELDVS-SNRLRGLPEDISALRALKILWLSGA-ELGTLPAGFCELASLES 254

Query: 164 L---HAGLLAIP--------------------QAPSSIVDLNKLETLSLFECRGLVLPPL 200
           L   + GL A+P                    + P++++ L  LE L L   +   +P L
Sbjct: 255 LMLDNNGLQALPAQFSCLQRLKMLNLSSNLFEEFPAALLPLAGLEELYLSRNQLTSVPSL 314

Query: 201 LSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRL 253
           +SGL  L  L L +  I  +P  I  L+ LE L L GN I  LP    QLSR+
Sbjct: 315 ISGLGRLLTLWLDNNRIRYLPDSIVELTGLEELVLQGNQIAVLPDHFGQLSRV 367

Homo sapiens (taxid: 9606)

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score = 84.7 bits (208), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 58/138 (42%), Positives = 79/138 (57%), Gaps = 1/138 (0%)

Query: 3    MAGCESLRCFPQNIHFISSIKIDCYKCVNLREFPRISGNVVELNLMCTPIEEVPLSIECL 62
            + GC  L   P  +   S   ++   C  L  FP IS NV EL +  T I+E+P SI+ L
Sbjct: 1312 LKGCSKLENIPSMVDLESLEVLNLSGCSKLGNFPEISPNVKELYMGGTMIQEIPSSIKNL 1371

Query: 63   PNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEAS 122
              LE L++     LK L TSI KLK L +L+LS CI+LE FP+   +M+ L  ++L   +
Sbjct: 1372 VLLEKLDLENSRHLKNLPTSIYKLKHLETLNLSGCISLERFPDSSRRMKCLRFLDLSR-T 1430

Query: 123  NIKELPSSIENLEGLKQL 140
            +IKELPSSI  L  L +L
Sbjct: 1431 DIKELPSSISYLTALDEL 1448

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7KRY7|LAP4_DROME Protein lap4 OS=Drosophila melanogaster GN=scrib PE=1 SV=1

 Score = 84.3 bits (207), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 88/285 (30%), Positives = 143/285 (50%), Gaps = 38/285 (13%)

Query: 41  NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINL 100
           N+VEL++    I ++P  I+ L +L+  + S  N + +L +   +LK+L  L L+  ++L
Sbjct: 84  NLVELDVSRNDIPDIPDDIKHLQSLQVADFS-SNPIPKLPSGFSQLKNLTVLGLND-MSL 141

Query: 101 ESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKS 160
            + P     +  LE + L E + +K LP +I  L  LK+L L G  ++  LP  LG L  
Sbjct: 142 TTLPADFGSLTQLESLELRE-NLLKHLPETISQLTKLKRLDL-GDNEIEDLPPYLGYLPG 199

Query: 161 LERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEI 220
           L  L              +D N+L+           LPP L  L+ L  L++ +  + E+
Sbjct: 200 LHELW-------------LDHNQLQR----------LPPELGLLTKLTYLDVSENRLEEL 236

Query: 221 PPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPELPLLLVMLGAS 280
           P +I  L SL  L+L+ N +E+LP  I++LSRL  L L +  +LQ L +       LG  
Sbjct: 237 PNEISGLVSLTDLDLAQNLLEALPDGIAKLSRLTILKL-DQNRLQRLND------TLG-- 287

Query: 281 DCKRLQFLPELTSCLEELDASILQ--ALSNRTGERLSKHMSPVQL 323
           +C+ +Q L    + L EL ASI Q   L+N   +R +    P+++
Sbjct: 288 NCENMQELILTENFLSELPASIGQMTKLNNLNVDRNALEYLPLEI 332

Required for polarization of the embryonic, imaginal disk and follicular epithelia. Specifically restricts apical membrane determinants to the apical cell surface; acts to exclude crb from the basolateral domain and define adherens junction position. Regulates cellular growth and differentiation; acts as a tumor suppressor. Essential for odor guided behavior.

Drosophila melanogaster (taxid: 7227)

>sp|P0CB16|DRL25_ARATH Putative disease resistance protein At4g19050 OS=Arabidopsis thaliana GN=At4g19050 PE=3 SV=2

 Score = 83.2 bits (204), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 81/249 (32%), Positives = 126/249 (50%), Gaps = 13/249 (5%)

Query: 49  CTPIEEVPLSIECLPNLETLEMSFCNSL-KRLSTSICKLKSLRSLDLSYCINLESFPEIL 107
           CT ++ +P  +  L NL+ L+      L + L   + + K LR LD+S      S PE+ 
Sbjct: 641 CTRLKRLP-QLRPLTNLQILDACGATDLVEMLEVCLEEKKELRILDMSKT----SLPELA 695

Query: 108 EKMELLEEIN---LEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERL 164
           + +  +  +N   L   S I+ELPS IE L  L+   ++GC KL ++  S G +  L  +
Sbjct: 696 DTIADVVNLNKLLLRNCSLIEELPS-IEKLTHLEVFDVSGCIKLKNINGSFGEMSYLHEV 754

Query: 165 HAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDC-EIMEIPPD 223
           +     + + P  I +L+ L+ L + +C  L   P L  L++L+  ++  C E+  I   
Sbjct: 755 NLSETNLSELPDKISELSNLKELIIRKCSKLKTLPNLEKLTNLEIFDVSGCTELETIEGS 814

Query: 224 IGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPELPLL--LVMLGASD 281
              LS L  +NLS  N+  LP  IS+LS L+ L L NC KL++LP L  L  LV+   S 
Sbjct: 815 FENLSCLHKVNLSETNLGELPNKISELSNLKELILRNCSKLKALPNLEKLTHLVIFDVSG 874

Query: 282 CKRLQFLPE 290
           C  L  + E
Sbjct: 875 CTNLDKIEE 883

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9RBS2|POPC_RALSO Protein PopC OS=Ralstonia solanacearum (strain GMI1000) GN=popC PE=4 SV=2

 Score = 81.6 bits (200), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 134/289 (46%), Gaps = 28/289 (9%)

Query: 3   MAGCESLRCFPQNIHFISSIKIDCYKCVNLREFPRISGNVV--ELNLMCTPIEEVPLSIE 60
           + G ++ +  P  +  + +++        L+  P + G      L +  +P+E++P    
Sbjct: 254 LKGAKNFKALPDAVWRLPALQELKLSETGLKSLPPVGGGSALQRLTIEDSPLEQLPAGFA 313

Query: 61  CLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLE- 119
            L  L +L +S    L++LS+ I +L +L+SL L     LE  P+ L ++E L  I    
Sbjct: 314 DLDQLASLSLSNTK-LEKLSSGIGQLPALKSLSLQDNPKLERLPKSLGQVEELTLIGGRI 372

Query: 120 -----------------EASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLE 162
                            + S++ +LP+    L  L  + L+  TKL  LP S+GNL +L+
Sbjct: 373 HALPSASGMSSLQKLTVDNSSLAKLPADFGALGNLAHVSLSN-TKLRDLPASIGNLFTLK 431

Query: 163 RLHAGLLAIPQA---PSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIME 219
            L   L   P+    P+S   L+ L+ L+L   R   LP +  G SSL+ L + D  +  
Sbjct: 432 TL--SLQDNPKLGSLPASFGQLSGLQELTLNGNRIHELPSM-GGASSLQTLTVDDTALAG 488

Query: 220 IPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLP 268
           +P D G L +L  L+LS   +  LP +   L  L+ L L    +L +LP
Sbjct: 489 LPADFGALRNLAHLSLSNTQLRELPANTGNLHALKTLSLQGNQQLATLP 537

Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway.

Ralstonia solanacearum (strain GMI1000) (taxid: 267608)

>sp|A4IIK1|MFHA1_XENTR Malignant fibrous histiocytoma-amplified sequence 1 homolog OS=Xenopus tropicalis GN=mfhas1 PE=2 SV=1

 Score = 79.3 bits (194), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 84/260 (32%), Positives = 123/260 (47%), Gaps = 14/260 (5%)

Query: 32  LREFPRISGNVV---ELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKS 88
           LR  PR  G +V   EL++    I  +P +++ LP+L TL++   N L      +  + +
Sbjct: 136 LRTLPRQLGMLVDLEELDVSFNQITHLPDTMQGLPSLRTLDLDH-NELCSFPQQLFHVPA 194

Query: 89  LRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKL 148
           L  LD S    L S PE +  M+ L+ + L   S +  LP SI  L  L+ L L     L
Sbjct: 195 LEELDFSGNKMLGSLPEGIRSMQSLKILWLSSTS-LCLLPDSICELVNLESLMLDN-NNL 252

Query: 149 GSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLK 208
            +LPE  G L+ L+ L+    A    P  ++ L  LE L +   R +VLP ++S ++ L 
Sbjct: 253 HTLPEGFGALQKLKMLNVSSNAFQDFPVPLLQLVDLEELYMSRNRLVVLPEVISCMTKLV 312

Query: 209 KLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLP 268
            L L +  I  +P  I  LS LE L L GN I  LP    +LS+      VN  K++  P
Sbjct: 313 TLWLDNNRIRYLPDSIVELSFLEELVLQGNQIAILPDDFGKLSK------VNIWKIKDNP 366

Query: 269 --ELPLLLVMLGASDCKRLQ 286
             + P  + M G S     Q
Sbjct: 367 LIQPPYEVCMKGISYIAAYQ 386

Xenopus tropicalis (taxid: 8364)

>sp|Q3V1N1|MFHA1_MOUSE Malignant fibrous histiocytoma-amplified sequence 1 homolog OS=Mus musculus GN=Mfhas1 PE=2 SV=2

 Score = 77.8 bits (190), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/233 (33%), Positives = 118/233 (50%), Gaps = 27/233 (11%)

Query: 44  ELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESF 103
           +LNL    +  +P  +  L +LE L++SF N L  L  S   L  LR+LD+ +   L +F
Sbjct: 135 KLNLSHNQLPALPAQLGALAHLEELDVSF-NRLAHLPDSFSCLNHLRTLDVDHN-QLTAF 192

Query: 104 PEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLER 163
           P+ L ++  LEE+++  ++ ++ LP  I  L  LK L L+G  +LG+LP     L SLE 
Sbjct: 193 PQQLLQLAALEELDVS-SNRLRGLPEDISALRALKILWLSGA-ELGTLPRGFCELASLES 250

Query: 164 L---HAGLLAIP--------------------QAPSSIVDLNKLETLSLFECRGLVLPPL 200
           L   + GL A+P                    + P++++ L  LE L L   +   +P L
Sbjct: 251 LMLDNNGLQALPDEFSRLQRLKMLNLSSNLFEEFPAALLPLAGLEELYLSRNQLTSVPSL 310

Query: 201 LSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRL 253
           ++GL  L  L L +  I  +P  I  L+ LE L L GN I  LP +  QLSR+
Sbjct: 311 IAGLGRLLTLWLDNNRIRYLPDSIVELTGLEELVLQGNQIAVLPDNFGQLSRV 363

Mus musculus (taxid: 10090)

>sp|Q14160|SCRIB_HUMAN Protein scribble homolog OS=Homo sapiens GN=SCRIB PE=1 SV=4

 Score = 75.5 bits (184), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 74/241 (30%), Positives = 109/241 (45%), Gaps = 11/241 (4%)

Query: 9   LRCFPQ---NIHFISSIKIDCYKCVNLREFPRISGNVVELNLMCTPIEEVPLSIECLPNL 65
           L+C P    N H  S  K  C       E  R S ++ EL L    + E+P     L NL
Sbjct: 2   LKCIPLWRCNRHVESVDKRHCSLQAVPEEIYRYSRSLEELLLDANQLRELPKPFFRLLNL 61

Query: 66  ETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASN-- 123
             L +S  N ++RL   +     L  LD+S        PEI E ++  + + + + S   
Sbjct: 62  RKLGLS-DNEIQRLPPEVANFMQLVELDVSR----NDIPEIPESIKFCKALEIADFSGNP 116

Query: 124 IKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNK 183
           +  LP     L  L  L L   + L +LP  +GNL +L  L      +   P+S+  L K
Sbjct: 117 LSRLPDGFTQLRSLAHLALNDVS-LQALPGDVGNLANLVTLELRENLLKSLPASLSFLVK 175

Query: 184 LETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESL 243
           LE L L      VLP  L  L +L++L L   ++  +PP++G L  L  L++S N +E L
Sbjct: 176 LEQLDLGGNDLEVLPDTLGALPNLRELWLDRNQLSALPPELGNLRRLVCLDVSENRLEEL 235

Query: 244 P 244
           P
Sbjct: 236 P 236

Scaffold protein involved in different aspects of polarized cells differentiation regulating epithelial and neuronal morphogenesis. Most probably functions in the establishment of apico-basal cell polarity. May function in cell proliferation regulating progression from G1 to S phase and as a positive regulator of apoptosis for instance during acinar morphogenesis of the mammary epithelium. May also function in cell migration and adhesion and hence regulate cell invasion through MAPK signaling. May play a role in exocytosis and in the targeting synaptic vesicles to synapses. Functions as an activator of Rac GTPase activity.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	369
147802475	1244	hypothetical protein VITISV_027841 [Viti	0.750	0.222	0.417	4e-47
359493273	1233	PREDICTED: TMV resistance protein N-like	0.644	0.193	0.430	5e-41
451798988	1219	TMV resistance protein N-like protein 6	0.861	0.260	0.367	2e-39
359486075	1291	PREDICTED: TMV resistance protein N-like	0.766	0.219	0.392	7e-39
359486071	1261	PREDICTED: TMV resistance protein N-like	0.856	0.250	0.357	9e-39
359495276	1542	PREDICTED: TMV resistance protein N-like	0.756	0.180	0.384	2e-38
147828597	1500	hypothetical protein VITISV_003859 [Viti	0.815	0.200	0.370	3e-38
147770134	1414	hypothetical protein VITISV_040107 [Viti	0.766	0.200	0.389	4e-38
451798990	1335	TMV resistance protein N-like protein 7	0.861	0.238	0.351	4e-38
147821215	1441	hypothetical protein VITISV_004613 [Viti	0.815	0.208	0.367	4e-38

>gi|147802475|emb|CAN61853.1| hypothetical protein VITISV_027841 [Vitis vinifera]

 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 142/340 (41%), Positives = 187/340 (55%), Gaps = 63/340 (18%)

Query: 3   MAGCESLRCFPQNIHFISSIKIDCYK------CVNLREFPRISGNV---VELNLMCTPIE 53
           +  C+ LR FP+      SIK++C K      C +L+ FP I GN+    EL L  T I 
Sbjct: 584 LKNCKKLRSFPR------SIKLECLKYLSLSGCSDLKNFPEIQGNMQHLSELYLDGTAIS 637

Query: 54  EVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELL 113
           E+P SI  L  L  L++  C  LK L +SICKLKSL +L LS C  LESFPEI+E ME L
Sbjct: 638 ELPFSIGYLTGLILLDLENCKRLKSLPSSICKLKSLETLILSACSKLESFPEIMENMEHL 697

Query: 114 EEI-----------------------NLEEASNIKELPSSIENLEGLKQLKLTGCTKLGS 150
           +++                       NL +  N+  LP SI NL+ L+ L ++GC+KL  
Sbjct: 698 KKLLLDGTALKQLHPSIEHLNGLVSLNLRDCKNLATLPCSIGNLKSLETLIVSGCSKLQQ 757

Query: 151 LPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLV------------LP 198
           LPE+LG+L+ L +L A    + Q PSSIV L  LE LS   C+GL             LP
Sbjct: 758 LPENLGSLQCLVKLQADGTLVRQPPSSIVLLRNLEILSFGGCKGLASNSWSSLFSFWLLP 817

Query: 199 -----------PLLSGLSSLKKLELGDCEIME--IPPDIGCLSSLESLNLSGNNIESLPT 245
                      P LSGL SL++L++ DC +ME  +P DI  LSSLE+LNLS NN  SLP 
Sbjct: 818 RKSSDTIGLQLPSLSGLCSLRELDISDCNLMEGAVPFDICNLSSLETLNLSRNNFFSLPA 877

Query: 246 SISQLSRLRWLYLVNCVKLQSLPELPLLLVMLGASDCKRL 285
            IS+LS+LR+L L +C  L  +PELP  ++ + A  C  L
Sbjct: 878 GISKLSKLRFLSLNHCKSLLQIPELPSSIIEVNAQYCSSL 917

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493273|ref|XP_002272034.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  174 bits (442), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 123/286 (43%), Positives = 160/286 (55%), Gaps = 48/286 (16%)

Query: 49  CTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILE 108
           CT I E+P SI  L  L  L++  C  LK L +SICKLKSL +L LS C  LESFPEI+E
Sbjct: 665 CTTISELPFSIGYLTGLILLDLENCKRLKSLPSSICKLKSLETLILSACSKLESFPEIME 724

Query: 109 KMELLEEI-----------------------NLEEASNIKELPSSIENLEGLKQLKLTGC 145
            ME L+++                       NL +  N+  LP SI NL+ L+ L ++GC
Sbjct: 725 NMEHLKKLLLDGTALKQLHPSIEHLNGLVSLNLRDCKNLATLPCSIGNLKSLETLIVSGC 784

Query: 146 TKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLV--------- 196
           +KL  LPE+LG+L+ L +L A    + Q PSSIV L  LE LS   C+GL          
Sbjct: 785 SKLQQLPENLGSLQCLVKLQADGTLVRQPPSSIVLLRNLEILSFGGCKGLASNSWSSLFS 844

Query: 197 ---LP-----------PLLSGLSSLKKLELGDCEIME--IPPDIGCLSSLESLNLSGNNI 240
              LP           P LSGL SL++L++ DC +ME  +P DI  LSSLE+LNLS NN 
Sbjct: 845 FWLLPRKSSDTIGLQLPSLSGLCSLRELDISDCNLMEGAVPFDICNLSSLETLNLSRNNF 904

Query: 241 ESLPTSISQLSRLRWLYLVNCVKLQSLPELPLLLVMLGASDCKRLQ 286
            SLP  IS+LS+LR+L L +C  L  +PELP  ++ + A  C  L 
Sbjct: 905 FSLPAGISKLSKLRFLSLNHCKSLLQIPELPSSIIEVNAQYCSSLN 950

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|451798988|gb|AGF69192.1| TMV resistance protein N-like protein 6 [Vitis labrusca]

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 141/384 (36%), Positives = 188/384 (48%), Gaps = 66/384 (17%)

Query: 3    MAGCESLRCFPQNIHFISSIKIDCYKCVNLREFPRISGNVVEL---NLMCTPIEEVPLSI 59
            + GC+ L+ F  +IH  S   +    C  L++FP + GN+  L   +L  T I+ +PLSI
Sbjct: 700  LEGCKKLKSFSSSIHMESLQILTLSGCSKLKKFPEVQGNMEHLPNLSLEGTAIKGLPLSI 759

Query: 60   ECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLE 119
            E L  L  L +  C SL+ L  SI KLKSL++L LS C  L+  PEI E ME L E+ L 
Sbjct: 760  ENLTGLALLNLKECKSLESLPRSIFKLKSLKTLILSNCTRLKKLPEIQENMESLMELFL- 818

Query: 120  EASNIKELPSSIENLEGLKQLKLTGCTKLGSLPES------------------------L 155
            + S I ELPSSI  L GL  L L  C KL SLP+S                        L
Sbjct: 819  DGSGIIELPSSIGCLNGLVFLNLKNCKKLASLPQSFCELTSLGTLTLCGCSELKELPDDL 878

Query: 156  GNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRG-------LVLP---------- 198
            G+L+ L  L+A    I + P SI  L  L+ LSL  C+G       +V            
Sbjct: 879  GSLQCLAELNADGSGIQEVPPSITLLTNLQKLSLAGCKGGDSKSRNMVFSFHSSPTEELR 938

Query: 199  -PLLSGLSSLKKLELGDCEIME--IPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRW 255
             P  SGL SL+ L L  C + E  +P D+G + SLE L+LS N+  ++P S+S LSRLR 
Sbjct: 939  LPSFSGLYSLRVLILQRCNLSEGALPSDLGSIPSLERLDLSRNSFITIPASLSGLSRLRS 998

Query: 256  LYLVNCVKLQSLPELPLLLVMLGASDCKRLQFLPELTSCLEELDASILQALSNRTGERLS 315
            L L  C  LQSLPELP  +  L A  C                  + L+  S  +G   S
Sbjct: 999  LTLEYCKSLQSLPELPSSVESLNAHSC------------------TSLETFSCSSGAYTS 1040

Query: 316  KHMSPVQLIFANCLKLNESIWADL 339
            K    ++  F NC +L E+  +D+
Sbjct: 1041 KKFGDLRFNFTNCFRLGENQGSDI 1064

Source: Vitis labrusca

Species: Vitis labrusca

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486075|ref|XP_002273047.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  167 bits (423), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 130/331 (39%), Positives = 181/331 (54%), Gaps = 48/331 (14%)

Query: 3    MAGCESLRCFPQNIHFISSIKIDCYKCVNLREFPRISG---NVVELNLMCTPIEEVPLSI 59
            + GC++L+ F  +IH  S   +    C  L++ P + G   N+ EL+L  T I+ +PLSI
Sbjct: 702  LEGCKNLKSFLSSIHLESLQILTLSGCSKLKKLPEVQGAMDNLSELSLKGTAIKGLPLSI 761

Query: 60   ECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLE 119
            E L  L    +  C SL+ L   I KLKSL++L LS C+ L+  PEI E ME L+E+ L+
Sbjct: 762  EYLNGLALFNLEECKSLESLPGCIFKLKSLKTLILSNCLRLKKLPEIQENMESLKELFLD 821

Query: 120  EASNIKELPSSIENLEGLKQLKLTGCTKLGSLPES------------------------L 155
            + + ++ELPSSIE+L GL  LKL  C +L SLPES                        +
Sbjct: 822  D-TGLRELPSSIEHLNGLVLLKLKNCKRLASLPESICKLTSLQTLTLSGCSELKKLPDDM 880

Query: 156  GNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRG-----------LVLPPL---- 200
            G+L+ L +L A    I + PSSI  L +L+ LSL  C+G           L   P     
Sbjct: 881  GSLQCLLKLKANGSGIQEVPSSITLLTRLQVLSLAGCKGGGSKSRNLALSLRASPTDGLR 940

Query: 201  ---LSGLSSLKKLELGDCEIME--IPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRW 255
               L+ L SLKKL L D  ++E  +P D+  LS LE L+LS NN  ++PTS+S+L  LR 
Sbjct: 941  LSSLTVLHSLKKLNLSDRNLLEGALPSDLSSLSWLECLDLSRNNFITVPTSLSRLPHLRR 1000

Query: 256  LYLVNCVKLQSLPELPLLLVMLGASDCKRLQ 286
            L + +C  LQSLPELP  +  L A+DC  L+
Sbjct: 1001 LIVEHCKNLQSLPELPSSIKELLANDCTSLE 1031

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486071|ref|XP_002272667.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  167 bits (422), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 137/383 (35%), Positives = 200/383 (52%), Gaps = 67/383 (17%)

Query: 3    MAGCESLRCFPQNIHFISSIKIDCYKCVNLREFPRISG---NVVELNLMCTPIEEVPLSI 59
            + GC++L+ F  +IH  S   I    C  L++FP + G   N+ EL+L  T I+ +PLSI
Sbjct: 702  LEGCKNLKSFSSSIHLESLQTITLSGCSKLKKFPEVQGAMDNLPELSLKGTAIKGLPLSI 761

Query: 60   ECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLE 119
            E L  L  L +  C SL+ L   I KLKSL++L LS C  L+  PEI E ME L+++ L+
Sbjct: 762  EYLNGLSLLNLEECKSLESLPGCIFKLKSLKTLILSNCSRLKKLPEIQENMESLKKLFLD 821

Query: 120  EASNIKELPSSIENLEG------------------------LKQLKLTGCTKLGSLPESL 155
            + + ++ELPSSIE+L G                        L+ L L+GC++L  LP+ +
Sbjct: 822  D-TGLRELPSSIEHLNGLVLLKLKNCKKLASLPESICKLTSLQTLTLSGCSELKKLPDDM 880

Query: 156  GNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRG-------LVL----------- 197
            G+L+ L +L A    I + P+SI  L KLE LSL  C+G       L L           
Sbjct: 881  GSLQCLVKLKANGTGIQEVPTSITLLTKLEVLSLAGCKGGESKSRNLALCLRSSPTKGLR 940

Query: 198  PPLLSGLSSLKKLELGDCEIME--IPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRW 255
            P  L  L SL+KL L  C ++E  +P D+  LS LE L+LS N+  ++P ++S+L RL+ 
Sbjct: 941  PSFLPVLYSLRKLNLSGCNLLEGALPSDLSSLSWLECLDLSRNSFITVP-NLSRLPRLKR 999

Query: 256  LYLVNCVKLQSLPELPLLLVMLGASDCKRLQFLPELTSCLEELDASILQALSNRTGERLS 315
            L L +C  L+SLPELP  +  L A+DC  L+     +S                   R S
Sbjct: 1000 LILEHCKSLRSLPELPSNIEKLLANDCTSLETFSNPSSAY---------------AWRNS 1044

Query: 316  KHMSPVQLIFANCLKLNESIWAD 338
            +H++     F NC +L E+  +D
Sbjct: 1045 RHLN---FQFYNCFRLVENEQSD 1064

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495276|ref|XP_002276447.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 128/333 (38%), Positives = 177/333 (53%), Gaps = 54/333 (16%)

Query: 6    CESLRCFPQNIHFISSIKIDCYKCVNLREFPRISGNV---VELNLMCTPIEEVPLSIECL 62
            C+ L CFP  I   +   ++   C  L++FP I GN+   +EL L  T IEE+P SI  L
Sbjct: 944  CKKLICFPSIIDMKALEILNFSGCSGLKKFPNIQGNMENLLELYLASTAIEELPSSIGHL 1003

Query: 63   PNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEAS 122
              L  L++ +C +LK LSTSICKLKSL +L LS C  LESFPE++E M+ L+E+ L + +
Sbjct: 1004 TGLVLLDLKWCKNLKSLSTSICKLKSLENLSLSGCSKLESFPEVMENMDNLKEL-LLDGT 1062

Query: 123  NIKELPSSIENLEG------------------------LKQLKLTGCTKLGSLPESLGNL 158
             I+ LPSSIE L+G                        L+ L ++GC +L +LP +LG+L
Sbjct: 1063 PIEVLPSSIERLKGLVLLNLRKCKNLVSLSNGMCNLTSLETLIVSGCLQLNNLPRNLGSL 1122

Query: 159  KSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECR------------------------G 194
            + L +LHA   AI Q P SIV L  L+ L    C+                        G
Sbjct: 1123 QRLAQLHADGTAITQPPDSIVLLRNLQVLIYPGCKILAPTSLGSLFSFWLLHGNSSNGIG 1182

Query: 195  LVLPPLLSGLSSLKKLELGDCEIME--IPPDIGCLSSLESLNLSGNNIESLPTSISQLSR 252
            L LP   S   SL  L++ DC+++E  IP  I  L SL+ L+LS NN  S+P  IS+L+ 
Sbjct: 1183 LRLPSSFSSFRSLSNLDISDCKLIEGAIPNGICSLISLKKLDLSRNNFLSIPAGISELTN 1242

Query: 253  LRWLYLVNCVKLQSLPELPLLLVMLGASDCKRL 285
            L+ L L  C  L  +PELP  +  + A +C  L
Sbjct: 1243 LKDLRLGQCQSLTGIPELPPSVRDIDAHNCTAL 1275

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147828597|emb|CAN68630.1| hypothetical protein VITISV_003859 [Vitis vinifera]

 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 140/378 (37%), Positives = 188/378 (49%), Gaps = 77/378 (20%)

Query: 6    CESLRCFPQNIHFISSIKIDCYKCVNLREFPRISGNV---VELNLMCTPIEEVPLSIECL 62
            C+ L CFP  I   +   ++   C  L++FP I GN+    EL L  T IEE+P SI  L
Sbjct: 902  CKKLICFPSIIDMKALEILNFSGCSGLKKFPNIQGNMENLFELYLASTAIEELPSSIGHL 961

Query: 63   PNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEAS 122
              L  L++ +C +LK L TSICKLKSL +L LS C  L SFPE+ E M+ L+E+ L + +
Sbjct: 962  TGLVLLDLKWCKNLKSLPTSICKLKSLENLSLSGCSKLGSFPEVTENMDKLKEL-LLDGT 1020

Query: 123  NIKELPSSIENLEG------------------------LKQLKLTGCTKLGSLPESLGNL 158
             I+ LPSSI+ L+G                        L+ L ++GC++L +LP +LG+L
Sbjct: 1021 PIEVLPSSIDRLKGLVLLNLRKCKNLVSLSNGMCNLTSLETLVVSGCSQLNNLPRNLGSL 1080

Query: 159  KSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECR------------------------G 194
            + L +LHA   AI Q P SIV L  L+ L    C+                        G
Sbjct: 1081 QRLAQLHADGTAIAQPPDSIVLLRNLQVLIYPGCKILAPTSLGSLFSFWLLHGNSSNGIG 1140

Query: 195  LVLPPLLSGLSSLKKLELGDCEIME--IPPDIGCLSSLESLNLSGNNIESLPTSISQLSR 252
            L LP   S   SL  L+L DC+++E  IP  I  L SL+ L+LS NN  S+P  IS+L+ 
Sbjct: 1141 LRLPSSFSSFRSLSNLDLSDCKLIEGAIPNGICSLISLKKLDLSQNNFLSIPAGISELTN 1200

Query: 253  LRWLYLVNCVKLQSLPELPLLLVMLGASDCKRLQFLPELTSCLEELDASILQALSNRTGE 312
            L  L L  C  L  +PELPL L  + A +C  L  LP  +S       S LQ L      
Sbjct: 1201 LEDLRLGQCQSLTGIPELPLSLRDIDAHNCTAL--LPGSSS------VSTLQGL------ 1246

Query: 313  RLSKHMSPVQLIFANCLK 330
                     Q +F NC K
Sbjct: 1247 ---------QFLFYNCSK 1255

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147770134|emb|CAN76615.1| hypothetical protein VITISV_040107 [Vitis vinifera]

 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 129/331 (38%), Positives = 180/331 (54%), Gaps = 48/331 (14%)

Query: 3    MAGCESLRCFPQNIHFISSIKIDCYKCVNLREFPRISG---NVVELNLMCTPIEEVPLSI 59
            + GC++L+ F  +IH  S   +    C  L++ P + G   N+ EL+L  T I+ +PLSI
Sbjct: 675  LEGCKNLKSFLSSIHLESLQILTLSGCSKLKKXPEVQGAMDNLSELSLKGTAIKGLPLSI 734

Query: 60   ECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLE 119
            E L  L    +  C SL+ L     KLKSL++L LS C+ L+  PEI E ME L+E+ L+
Sbjct: 735  EYLNGLALFNLEECKSLESLPGCXFKLKSLKTLILSNCLRLKKLPEIQENMESLKELFLD 794

Query: 120  EASNIKELPSSIENLEGLKQLKLTGCTKLGSLPES------------------------L 155
            + + ++ELPSSIE+L GL  LKL  C +L SLPES                        +
Sbjct: 795  D-TGLRELPSSIEHLNGLVLLKLKNCKRLASLPESICKLTSLQTLTLSGCSELKKLPDDM 853

Query: 156  GNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRG-----------LVLPPL---- 200
            G+L+ L +L A    I + PSSI  L +L+ LSL  C+G           L   P     
Sbjct: 854  GSLQCLLKLKANGSGIQEVPSSITLLTRLQVLSLAGCKGGGSKSRNLALSLRASPTDGLR 913

Query: 201  ---LSGLSSLKKLELGDCEIME--IPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRW 255
               L+ L SLKKL L D  ++E  +P D+  LS LE L+LS NN  ++PTS+S+L  LR 
Sbjct: 914  LSSLTVLHSLKKLNLSDRNLLEGALPSDLSSLSWLECLDLSRNNFITVPTSLSRLPHLRR 973

Query: 256  LYLVNCVKLQSLPELPLLLVMLGASDCKRLQ 286
            L + +C  LQSLPELP  +  L A+DC  L+
Sbjct: 974  LIVEHCKNLQSLPELPSSIKELLANDCTSLE 1004

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|451798990|gb|AGF69193.1| TMV resistance protein N-like protein 7 [Vitis labrusca]

 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 135/384 (35%), Positives = 189/384 (49%), Gaps = 66/384 (17%)

Query: 3    MAGCESLRCFPQNIHFISSIKIDCYKCVNLREFPRISGNVVEL---NLMCTPIEEVPLSI 59
            + GC+ L+ F  +IH  S   +    C  L++FP + GN+  L   +L  T I+ +PLSI
Sbjct: 708  LEGCKKLKSFSSSIHMESLQILTLSGCSKLKKFPEVQGNMEHLPNLSLEGTAIKGLPLSI 767

Query: 60   ECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLE 119
            E L  L  L +  C SL+ L  SI KLKSL++L LS C  L+  PEI E ME L E+ L 
Sbjct: 768  ENLTGLALLNLKECKSLESLPRSIFKLKSLKTLILSNCTRLKKLPEIQENMESLMELFL- 826

Query: 120  EASNIKELPSSIENLEG------------------------LKQLKLTGCTKLGSLPESL 155
            + S I ELPSSI  L G                        L+ L L GC++L  LP++L
Sbjct: 827  DGSGIIELPSSIGCLNGLVFLNLKNCKKLASLPQSFCELTSLRTLTLCGCSELKDLPDNL 886

Query: 156  GNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRG-------LVLP---------- 198
            G+L+ L  L+A    + + P SI  L  L+ LSL  C+G       ++            
Sbjct: 887  GSLQCLTELNADGSGVQEVPPSITLLTNLQILSLAGCKGGESKSRNMIFSFHSSPTEELR 946

Query: 199  -PLLSGLSSLKKLELGDCEIME--IPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRW 255
             P  SGL SL+ L L  C + E  +P D+G + SLE L+LS N+  ++P S+S LSRLR 
Sbjct: 947  LPSFSGLYSLRVLILQRCNLSEGALPSDLGSIPSLERLDLSRNSFITIPASLSGLSRLRS 1006

Query: 256  LYLVNCVKLQSLPELPLLLVMLGASDCKRLQFLPELTSCLEELDASILQALSNRTGERLS 315
            L L  C  LQSLPELP  +  L A  C                  + L+  +  +    S
Sbjct: 1007 LTLEYCKSLQSLPELPSSVESLNAHSC------------------TSLETFTCSSSAYTS 1048

Query: 316  KHMSPVQLIFANCLKLNESIWADL 339
            K    ++  F NC +L E+  +D+
Sbjct: 1049 KKFGDLRFNFTNCFRLGENQGSDI 1072

Source: Vitis labrusca

Species: Vitis labrusca

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147821215|emb|CAN66453.1| hypothetical protein VITISV_004613 [Vitis vinifera]

 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 139/378 (36%), Positives = 190/378 (50%), Gaps = 77/378 (20%)

Query: 6    CESLRCFPQNIHFISSIKIDCYKCVNLREFPRISGNV---VELNLMCTPIEEVPLSIECL 62
            C+ L CFP  I   +   ++   C  L++FP I GN+   +EL L  T IEE+P SI  L
Sbjct: 843  CKKLICFPSIIDMKALEILNFSSCSGLKKFPNIQGNMENLLELYLASTAIEELPSSIGHL 902

Query: 63   PNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEAS 122
              L  L++ +C +LK L TSICKLKSL +L LS C  LESFPE+ E M+ L+E+ L + +
Sbjct: 903  TGLVLLDLKWCKNLKSLPTSICKLKSLENLSLSGCSKLESFPEVTENMDNLKEL-LLDGT 961

Query: 123  NIKELPSSIENLEG------------------------LKQLKLTGCTKLGSLPESLGNL 158
             I+ LPSSIE L+G                        L+ L ++GC++L +LP +LG+L
Sbjct: 962  PIEVLPSSIERLKGLILLNLRKCKNLVSLSNGMCNLTSLETLIVSGCSQLNNLPRNLGSL 1021

Query: 159  KSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECR------------------------G 194
            + L +LHA   AI Q P SIV L  L+ L    C+                        G
Sbjct: 1022 QCLAQLHADGTAIAQPPDSIVLLRNLQVLIYPGCKILAPNSLGSLFSFWLLHGNSPNGIG 1081

Query: 195  LVLPPLLSGLSSLKKLELGDCEIME--IPPDIGCLSSLESLNLSGNNIESLPTSISQLSR 252
            L LP   S   SL  L++ DC+++E  IP  I  L SL+ L+LS NN  S+P  IS+L+ 
Sbjct: 1082 LRLPSSFSSFRSLSNLDISDCKLIEGAIPNGICSLISLKKLDLSRNNFLSIPAGISELTN 1141

Query: 253  LRWLYLVNCVKLQSLPELPLLLVMLGASDCKRLQFLPELTSCLEELDASILQALSNRTGE 312
            L+ L L  C  L  +PELP  +  + A +C  L  LP  +S       S LQ L      
Sbjct: 1142 LKDLRLGQCQSLTGIPELPPSVRDIDAHNCTAL--LPGSSS------VSTLQGL------ 1187

Query: 313  RLSKHMSPVQLIFANCLK 330
                     Q +F NC K
Sbjct: 1188 ---------QFLFYNCSK 1196

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	369
TAIR|locus:2053405	1215	AT2G14080 [Arabidopsis thalian	0.596	0.181	0.305	2e-23
TAIR|locus:2094498	1981	AT3G25510 [Arabidopsis thalian	0.691	0.128	0.297	6.8e-23
TAIR|locus:2163426	1187	TAO1 "target of AVRB operation	0.658	0.204	0.312	1.7e-22
TAIR|locus:2129236	1301	SNC1 "SUPPRESSOR OF NPR1-1, CO	0.487	0.138	0.355	1.2e-17
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.869	0.263	0.281	1.4e-17
TAIR|locus:2147992	1189	AT5G11250 [Arabidopsis thalian	0.506	0.157	0.331	1e-16
TAIR|locus:2076043	1194	RPP1 "recognition of peronospo	0.501	0.154	0.333	1.7e-16
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.628	0.179	0.303	4e-15
TAIR|locus:2205824	1384	AT1G27170 [Arabidopsis thalian	0.439	0.117	0.341	5.9e-15
TAIR|locus:2827629	1355	AT2G17050 [Arabidopsis thalian	0.485	0.132	0.336	9.6e-15

TAIR|locus:2053405 AT2G14080 [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 2.0e-23, Sum P(2) = 2.0e-23
 Identities = 69/226 (30%), Positives = 106/226 (46%)

Query:     5 GCESLRCFPQNI-HFISSIKIDCYKCVNLREFPRISGNVVELNLM----CTPIEEVPLSI 59
             GC SL   P +I +    +K++   C +L E P   GN + L  +    C  + E+P SI
Sbjct:   706 GCSSLVELPFSIGNATKLLKLELSGCSSLLELPSSIGNAINLQTIDFSHCENLVELPSSI 765

Query:    60 ECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPXXXXXXXXXXXXXXX 119
                 NL+ L++S C+SLK L +SI    +L+ L L  C +L+  P               
Sbjct:   766 GNATNLKELDLSCCSSLKELPSSIGNCTNLKKLHLICCSSLKELPSSIGNCTNLKELHLT 825

Query:   120 XASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLA-IPQAPSSI 178
               S++ +LPSSI N   L++L L GC  L  LP  +G   +L+ L+ G L+ + + PS I
Sbjct:   826 CCSSLIKLPSSIGNAINLEKLILAGCESLVELPSFIGKATNLKILNLGYLSCLVELPSFI 885

Query:   179 VDLNKLETLSLFECRXXXXXXXXXXXXXXXXXXXXDCEIMEIPPDI 224
              +L+KL  L L  C+                    DC +++  P I
Sbjct:   886 GNLHKLSELRLRGCKKLQVLPTNINLEFLNELDLTDCILLKTFPVI 931

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2094498 AT3G25510 [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 6.8e-23, Sum P(2) = 6.8e-23
 Identities = 78/262 (29%), Positives = 116/262 (44%)

Query:     2 IMAGCESLRCFPQNIHFISSIKIDCYKCVNLREFPRISGNVVEL-NL---MCTPIEEVPL 57
             I+ GC SL   P   +  +   +D   C +L E P   GN + L NL    C+ + ++P 
Sbjct:   788 ILNGCSSLVELPFMGNATNLQNLDLGNCSSLVELPSSIGNAINLQNLDLSNCSSLVKLPS 847

Query:    58 SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPXXXXXXXXXXXXX 117
              I    NLE L++  C+SL  + TSI  + +L  LDLS C +L   P             
Sbjct:   848 FIGNATNLEILDLRKCSSLVEIPTSIGHVTNLWRLDLSGCSSLVELPSSVGNISELQVLN 907

Query:   118 XXXASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLH-AGLLAIPQAPS 176
                 SN+ +LPSS  +   L +L L+GC+ L  LP S+GN+ +L+ L+      + + PS
Sbjct:   908 LHNCSNLVKLPSSFGHATNLWRLDLSGCSSLVELPSSIGNITNLQELNLCNCSNLVKLPS 967

Query:   177 SIVDLNKLETLSLFECRXXXXXXXXXXXXXXXXXXXXDCEIMEIPPDIGCXXXXXXXXXX 236
             SI +L+ L TLSL  C+                    DC   +  P+I            
Sbjct:   968 SIGNLHLLFTLSLARCQKLEALPSNINLKSLERLDLTDCSQFKSFPEIS--TNIECLYLD 1025

Query:   237 XXXXXXXPTSISQLSRLRWLYL 258
                    P+SI   SRL  L++
Sbjct:  1026 GTAVEEVPSSIKSWSRLTVLHM 1047

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 1.7e-22, P = 1.7e-22
 Identities = 78/250 (31%), Positives = 119/250 (47%)

Query:    19 ISSIK-IDCYKCVNLREFPRISG--NVVELNLM-CTPIEEVPLSIECLPNLETLEMSFCN 74
             I ++K +D   CVNL+E P  S   N+ EL L+ C  + E+P SI    NL  L++  C+
Sbjct:   656 IRNLKWMDLSFCVNLKELPDFSTATNLQELRLINCLSLVELPSSIGNATNLLELDLIDCS 715

Query:    75 SLKRLSTSICKLKSLRSLDLSYCINLESFPXXXXXXXXXXXXXXXXASNIKELPSSIENL 134
             SL +L +SI  L +L+ L L+ C +L   P                 S++ E+PSSI N+
Sbjct:   716 SLVKLPSSIGNLTNLKKLFLNRCSSLVKLPSSFGNVTSLKELNLSGCSSLLEIPSSIGNI 775

Query:   135 EGLKQLKLTGCTKLGSLPESLGNLKSLERLHA-GLLAIPQAPSSIVDLNKLETLSLFECR 193
               LK++   GC+ L  LP S+GN  +L+ LH     ++ + PSS+++L +LE L+L  C 
Sbjct:   776 VNLKKVYADGCSSLVQLPSSIGNNTNLKELHLLNCSSLMECPSSMLNLTRLEDLNLSGCL 835

Query:   194 XXXXXXXXXXXXXXXXXXXXDCE-IMEIPPDI-GCXXXXXXXXXXXXXXXXXPTSISQLS 251
                                 DC  +ME+P  I                    P+SI  ++
Sbjct:   836 SLVKLPSIGNVINLQSLYLSDCSSLMELPFTIENATNLDTLYLDGCSNLLELPSSIWNIT 895

Query:   252 RLRWLYLVNC 261
              L+ LYL  C
Sbjct:   896 NLQSLYLNGC 905

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2129236 SNC1 "SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 69/194 (35%), Positives = 91/194 (46%)

Query:     3 MAGCESLRCFPQNIHFISSIKIDCYKCVNLREFPRISGNVVELNLMCTPIEEVPLSIECL 62
             M  C  L   P +++  S   +D   C +LR FP IS N+V L L  T IEE+P +I  L
Sbjct:   827 MKECTGLEVLPTDVNLSSLETLDLSGCSSLRSFPLISTNIVWLYLENTAIEEIPSTIGNL 886

Query:    63 PNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPXXXXXXXXXXXXXXXXAS 122
               L  LEM  C  L+ L T +  L SL +LDLS C +L SFP                  
Sbjct:   887 HRLVRLEMKKCTGLEVLPTDV-NLSSLETLDLSGCSSLRSFPLISESIKWLYLENTA--- 942

Query:   123 NIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLH----AGLLAIPQAPSSI 178
              I+E+P  +     LK LKL  C  L +LP ++GNL+ L         GL  +P      
Sbjct:   943 -IEEIPD-LSKATNLKNLKLNNCKSLVTLPTTIGNLQKLVSFEMKECTGLEVLPID---- 996

Query:   179 VDLNKLETLSLFEC 192
             V+L+ L  L L  C
Sbjct:   997 VNLSSLMILDLSGC 1010

GO:0000166 "nucleotide binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=NAS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=IMP

GO:0009733 "response to auxin stimulus" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IGI;IMP

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 1.4e-17, P = 1.4e-17
 Identities = 100/355 (28%), Positives = 141/355 (39%)

Query:    24 IDCYKCVNLREFPRISG--NVVELNLM-CTPIEEVPLSIECLPNLETLEMSFCNSLKRLS 80
             +D    +NLR+   ++   N+  LNL  CT ++++P +I CL  L  L +  C SL+ L 
Sbjct:   648 VDLSHSINLRQCLGLANAHNLERLNLEGCTSLKKLPSTINCLEKLIYLNLRDCTSLRSLP 707

Query:    81 TSICKLKSLRSLDLSYCINLESFPXXXXXXXXXXXXXXXXASNIKELPSSIENLEGLKQL 140
               I K +SL++L LS C +L+ FP                   IK LP SI+    L  L
Sbjct:   708 KGI-KTQSLQTLILSGCSSLKKFPLISENVEVLLLDGTV----IKSLPESIQTFRRLALL 762

Query:   141 KLTGCTKLGSLPESLGNLKSLERLH-AGLLAIPQAPSSIVDLNKLETL-----SLFECRX 194
              L  C KL  L   L  LK L+ L  +G   +   P    D+  LE L     S+ E   
Sbjct:   763 NLKNCKKLKHLSSDLYKLKCLQELILSGCSQLEVFPEIKEDMESLEILLMDDTSITEMPK 822

Query:   195 XXXXXXXXXXXXXXXXXXXDCEIMEIPPDIGCXXXXXXXXXXXXXXXXXPTSISQLSRLR 254
                                   +  +PP +GC                 P +I  LS L+
Sbjct:   823 MMHLSNIKTFSLCGTSSHVSVSMFFMPPTLGCSRLTDLYLSRCSLYKL-PDNIGGLSSLQ 881

Query:   255 WLYLV--NCVKXXXXXXXXXXXXXXGASDCKRLQFLPELTSCLEELDA---SILQALSN- 308
              L L   N                     CK L+ LP L   L+ LDA     L+ L+N 
Sbjct:   882 SLCLSGNNIENLPESFNQLNNLKWFDLKFCKMLKSLPVLPQNLQYLDAHECESLETLANP 941

Query:   309 ----RTGERLSKHMSPVQLIFANCLKLNESIWADL--QKRIRHMIIA--SLRLFY 355
                   GER+  H      IF+NC KLN+   A L    RI+  ++A  S + +Y
Sbjct:   942 LTPLTVGERI--HS---MFIFSNCYKLNQDAQASLVGHARIKSQLMANASAKRYY 991

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2147992 AT5G11250 [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
 Identities = 64/193 (33%), Positives = 92/193 (47%)

Query:     5 GCESLRCFPQNIHFISSIKIDCYKCVNLREFPRISGNVV---ELNLM-CTPIEEVPLSIE 60
             GC SL   P     I+  K+    C NL E P   GN +   EL+L  C+ +  +P SI 
Sbjct:   732 GCSSLVELPSFGDAINLQKLLLRYCSNLVELPSSIGNAINLRELDLYYCSSLIRLPSSIG 791

Query:    61 CLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPXXXXXXXXXXXXXXXX 120
                NL  L+++ C++L  L +SI    +L+ LDL  C  L   P                
Sbjct:   792 NAINLLILDLNGCSNLLELPSSIGNAINLQKLDLRRCAKLLELPSSIGNAINLQNLLLDD 851

Query:   121 ASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHA-GLLAIPQAPSSIV 179
              S++ ELPSSI N   L  + L+ C+ L  LP S+GNL+ L+ L   G   +   P +I 
Sbjct:   852 CSSLLELPSSIGNATNLVYMNLSNCSNLVELPLSIGNLQKLQELILKGCSKLEDLPINI- 910

Query:   180 DLNKLETLSLFEC 192
             +L  L+ L L +C
Sbjct:   911 NLESLDILVLNDC 923

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2076043 RPP1 "recognition of peronospora parasitica 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
 Identities = 65/195 (33%), Positives = 97/195 (49%)

Query:     3 MAGCESLRCFPQNIHFISSIKI-DCYKCVNLREFPRISG--NVVELNLM-CTPIEEVPLS 58
             +  C SL   P +I  ++S++I D   C +L + P I     + EL L  C+ + E+PLS
Sbjct:   744 LRNCSSLVELPSSIEKLTSLQILDLENCSSLEKLPAIENATKLRELKLQNCSSLIELPLS 803

Query:    59 IECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPXXXXXXXXXXXXXX 118
             I    NL+ L +S C+SL +L +SI  +  L   DLS C +L + P              
Sbjct:   804 IGTATNLKQLNISGCSSLVKLPSSIGDITDLEVFDLSNCSSLVTLPSSIGNLQNLCKLIM 863

Query:   119 XXASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSI 178
                S ++ LP +I NL+ L  L LT C++L S PE   ++  L RL     AI + P SI
Sbjct:   864 RGCSKLEALPINI-NLKSLDTLNLTDCSQLKSFPEISTHISEL-RLKG--TAIKEVPLSI 919

Query:   179 VDLNKLET--LSLFE 191
             +  + L    +S FE
Sbjct:   920 MSWSPLADFQISYFE 934

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0002239 "response to oomycetes" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP;TAS

GO:0030275 "LRR domain binding" evidence=ISS

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 4.0e-15, Sum P(2) = 4.0e-15
 Identities = 74/244 (30%), Positives = 106/244 (43%)

Query:    23 KIDCYKCVNLREFPRISG--NVVELNLM-CTPIEEVPLSIECLPNLETLEMSFCNSLKRL 79
             K+D  +C  L E P +S   N+ ELNL  C  + EV  SI+ L  L    ++ C  LK +
Sbjct:   629 KMDLSRCKYLVEVPDLSKATNLEELNLSYCQSLVEVTPSIKNLKGLSCFYLTNCIQLKDI 688

Query:    80 STSICKLKSLRSLDLSYCINLESFPXXXXXXXXXXXXXXXXASNIKELPSSIENLEGLKQ 139
                I  LKSL ++ +S C +L+ FP                ++ I+ELPSSI  L  L +
Sbjct:   689 PIGII-LKSLETVGMSGCSSLKHFPEISWNTRRLYLS----STKIEELPSSISRLSCLVK 743

Query:   140 LKLTGCTKLGSLPESLGNLKSLERLHA-GLLAIPQAPSSIVDLNKLETLSLFECRXXXXX 198
             L ++ C +L +LP  LG+L SL+ L+  G   +   P ++ +L  LETL +  C      
Sbjct:   744 LDMSDCQRLRTLPSYLGHLVSLKSLNLDGCRRLENLPDTLQNLTSLETLEVSGC--LNVN 801

Query:   199 XXXXXXXXXXXXXXXDCEIMEIPPDI-GCXXXXXXXXXXXXXXXXXPTSISQLSRLRWLY 257
                            +  I EIP  I                    P SIS+L  L  L 
Sbjct:   802 EFPRVSTSIEVLRISETSIEEIPARICNLSQLRSLDISENKRLASLPVSISELRSLEKLK 861

Query:   258 LVNC 261
             L  C
Sbjct:   862 LSGC 865

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2205824 AT1G27170 [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 5.9e-15, Sum P(2) = 5.9e-15
 Identities = 57/167 (34%), Positives = 77/167 (46%)

Query:    29 CVNLREFPRISGNVVELNLM---CTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICK 85
             C +L   P +S +     L+   CT + +VP S+  L  L  L+   C+ L      +  
Sbjct:   680 CHSLEAIPDLSNHEALEKLVFEQCTLLVKVPKSVGNLRKLIHLDFRRCSKLSEFLVDVSG 739

Query:    86 LKSLRSLDLSYCINLESFPXXXXXXXXXXXXXXXXASNIKELPSSIENLEGLKQLKLTGC 145
             LK L  L LS C +L   P                 + IK LP SI  L+ L+ L L GC
Sbjct:   740 LKLLEKLFLSGCSDLSVLPENIGAMTSLKELLLDGTA-IKNLPESINRLQNLEILSLRGC 798

Query:   146 TKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFEC 192
              K+  LP  +G LKSLE+L+    A+   PSSI DL  L+ L L  C
Sbjct:   799 -KIQELPLCIGTLKSLEKLYLDDTALKNLPSSIGDLKNLQDLHLVRC 844

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2827629 AT2G17050 [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 9.6e-15, Sum P(2) = 9.6e-15
 Identities = 65/193 (33%), Positives = 87/193 (45%)

Query:     3 MAGCESLRCFPQNIHF--ISSIKID-CY--KCVNLREFPRISGNVVELNLMCTPIEEVPL 57
             + GC  ++ FP   H   +  I +  C   K   L EF     N+ EL L  T I EV  
Sbjct:   489 LQGCTKIQSFPATRHLQHLRVINLSGCVEIKSTQLEEFQGFPRNLKELYLSGTGIREVTS 548

Query:    58 SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPXXXXXXXXXXXXX 117
             SI  L +LE L++S C  L+ L      L SL  L LS C  L++               
Sbjct:   549 SIH-LSSLEVLDLSNCKRLQNLPMGKGNLASLIKLMLSGCSKLQNIQDLPTNLKELYLA- 606

Query:   118 XXXASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLH-AG---LLAIPQ 173
                 ++I+E+PSSI +L  L       C KL  LP  +GNL SL  L  +G   L +IP 
Sbjct:   607 ---GTSIREVPSSICHLTQLVVFDAENCKKLQDLPMGMGNLISLTMLILSGCSELRSIPD 663

Query:   174 APSSIVDLNKLET 186
              P ++  LN  ET
Sbjct:   664 LPRNLRHLNLAET 676

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	369
PLN03210	1153	PLN03210, PLN03210, Resistant to P	3e-18
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-17
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-09
PLN03210	1153	PLN03210, PLN03210, Resistant to P	6e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	8e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-06
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	5e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-04
PRK15386	426	PRK15386, PRK15386, type III secretion protein Gog	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.003
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.004

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 86.5 bits (214), Expect = 3e-18
 Identities = 77/269 (28%), Positives = 121/269 (44%), Gaps = 20/269 (7%)

Query: 3   MAGCESLRCFPQNIHFISSIKIDCYKCVNLREFPRISGNVVELNLMCTPIEEVP--LSIE 60
           M+ CE+L   P  I+  S  +++   C  L+ FP IS N+  L+L  T IEE P  L +E
Sbjct: 688 MSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLE 747

Query: 61  CLPNLETLEMSFCNSLKR--LSTSICKL--KSLRSLDLSYCINLESFPEILEKMELLEEI 116
            L  L   EM      +R    T +  +   SL  L LS   +L   P  ++ +  LE +
Sbjct: 748 NLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHL 807

Query: 117 NLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPS 176
            +E   N++ LP+ I NLE L+ L L+GC++L + P+   N+  L     G   I + P 
Sbjct: 808 EIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTG---IEEVPW 863

Query: 177 SIVDLNKLETLSLFECRGLV-LPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNL 235
            I   + L  L +  C  L  +   +S L  L+ ++  DC  +      G  S  E    
Sbjct: 864 WIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNG--SPSEVAMA 921

Query: 236 SGNNIESLPTSISQLSRLRWLYLVNCVKL 264
           + N    LP+++        +  +NC  L
Sbjct: 922 TDNIHSKLPSTVC-------INFINCFNL 943

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 83.4 bits (206), Expect = 2e-17
 Identities = 96/327 (29%), Positives = 141/327 (43%), Gaps = 64/327 (19%)

Query: 24  IDCYKCVNLREFPRISGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSI 83
           ID     NL+E P +S        M T             NLETL++S C+SL  L +SI
Sbjct: 639 IDLRGSKNLKEIPDLS--------MAT-------------NLETLKLSDCSSLVELPSSI 677

Query: 84  CKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLT 143
             L  L  LD+S C NLE                         LP+ I NL+ L +L L+
Sbjct: 678 QYLNKLEDLDMSRCENLEI------------------------LPTGI-NLKSLYRLNLS 712

Query: 144 GCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFEC-------RGLV 196
           GC++L S P+   N+  L+     +   P    S + L  L+ L L E        R   
Sbjct: 713 GCSRLKSFPDISTNISWLDLDETAIEEFP----SNLRLENLDELILCEMKSEKLWERVQP 768

Query: 197 LPPLLSGLS-SLKKLELGDC-EIMEIPPDIGCLSSLESLNLSG-NNIESLPTSISQLSRL 253
           L PL++ LS SL +L L D   ++E+P  I  L  LE L +    N+E+LPT I+ L  L
Sbjct: 769 LTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGIN-LESL 827

Query: 254 RWLYLVNCVKLQSLPELPLLLVMLGASDCKRLQFLPELTSCLEELDASILQALSN--RTG 311
             L L  C +L++ P++   +  L  S    ++ +P        L    +   +N  R  
Sbjct: 828 ESLDLSGCSRLRTFPDISTNISDLNLSRTG-IEEVPWWIEKFSNLSFLDMNGCNNLQRVS 886

Query: 312 ERLSKHMSPVQLIFANCLKLNESIWAD 338
             +SK      + F++C  L E+ W  
Sbjct: 887 LNISKLKHLETVDFSDCGALTEASWNG 913

syringae 6; Provisional. Length = 1153

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 57.3 bits (138), Expect = 5e-09
 Identities = 57/214 (26%), Positives = 97/214 (45%), Gaps = 27/214 (12%)

Query: 41  NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINL 100
           N+  L+L    I ++P  I  L +         N ++ L + +  L +L++LDLS+    
Sbjct: 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN--- 173

Query: 101 ESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKS 160
                                 ++ +LP  + NL  L  L L+G  K+  LP  +  L +
Sbjct: 174 ----------------------DLSDLPKLLSNLSNLNNLDLSGN-KISDLPPEIELLSA 210

Query: 161 LERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEI 220
           LE L     +I +  SS+ +L  L  L L   +   LP  +  LS+L+ L+L + +I  I
Sbjct: 211 LEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSI 270

Query: 221 PPDIGCLSSLESLNLSGNNIESLPTSISQLSRLR 254
              +G L++L  L+LSGN++ +    I+ L  L 
Sbjct: 271 SS-LGSLTNLRELDLSGNSLSNALPLIALLLLLL 303

Length = 394

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 54.1 bits (130), Expect = 6e-08
 Identities = 44/145 (30%), Positives = 72/145 (49%), Gaps = 11/145 (7%)

Query: 104 PEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLER 163
           PE L K+++         S +++L   + +L GL+ + L G   L  +P+ L    +LE 
Sbjct: 610 PENLVKLQMQG-------SKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLET 661

Query: 164 LHAG-LLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPP 222
           L      ++ + PSSI  LNKLE L +  C  L + P    L SL +L L  C  ++  P
Sbjct: 662 LKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFP 721

Query: 223 DIGCLSSLESLNLSGNNIESLPTSI 247
           DI   +++  L+L    IE  P+++
Sbjct: 722 DIS--TNISWLDLDETAIEEFPSNL 744

syringae 6; Provisional. Length = 1153

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 53.4 bits (128), Expect = 8e-08
 Identities = 61/189 (32%), Positives = 90/189 (47%), Gaps = 4/189 (2%)

Query: 71  SFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSS 130
              N+L  L +S+ +L SL  L  S   +L+    +L    L         + ++   S 
Sbjct: 54  LSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLL--NLLPLPSLDLNLNRLRSNISE 111

Query: 131 IENLEGLKQLKLTGCTKLGSLPESLGNLKS-LERLHAGLLAIPQAPSSIVDLNKLETLSL 189
           +  L  L  L L     +  +P  +G LKS L+ L      I   PS + +L  L+ L L
Sbjct: 112 LLELTNLTSLDL-DNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDL 170

Query: 190 FECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQ 249
                  LP LLS LS+L  L+L   +I ++PP+I  LS+LE L+LS N+I  L +S+S 
Sbjct: 171 SFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSN 230

Query: 250 LSRLRWLYL 258
           L  L  L L
Sbjct: 231 LKNLSGLEL 239

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 51.4 bits (123), Expect = 4e-07
 Identities = 78/261 (29%), Positives = 118/261 (45%), Gaps = 32/261 (12%)

Query: 54  EVPLSIECLPNLETLEMSFCNSLKRLSTSICKL-KSLRSLDLSYCINLESFPEILEKMEL 112
           ++  +I  LP ++T+ +S       +   I     SLR L+LS   N  +       +  
Sbjct: 84  KISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSN--NNFTGSIPRGSIPN 141

Query: 113 LEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIP 172
           LE ++L       E+P+ I +   LK L L G   +G +P SL NL SLE L        
Sbjct: 142 LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL-------- 193

Query: 173 QAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIM-EIPPDIGCLSSLE 231
                        TL+  +  G + P  L  + SLK + LG   +  EIP +IG L+SL 
Sbjct: 194 -------------TLASNQLVGQI-PRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239

Query: 232 SLNLSGNNIE-SLPTSISQLSRLRWLYLV-NCVKLQSLPELPLL--LVMLGASDCKRLQF 287
            L+L  NN+   +P+S+  L  L++L+L  N +     P +  L  L+ L  SD      
Sbjct: 240 HLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE 299

Query: 288 LPELTSCLEELDASILQALSN 308
           +PEL   L+ L+  IL   SN
Sbjct: 300 IPELVIQLQNLE--ILHLFSN 318

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 51.0 bits (122), Expect = 7e-07
 Identities = 63/208 (30%), Positives = 94/208 (45%), Gaps = 26/208 (12%)

Query: 54  EVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELL 113
           E+P  I    +L+ L++     + ++  S+  L SL  L L+    +   P  L +M+ L
Sbjct: 155 EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL 214

Query: 114 EEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLER--LHAGLLAI 171
           + I L   +   E+P  I  L  L  L L      G +P SLGNLK+L+   L+   L+ 
Sbjct: 215 KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG 274

Query: 172 PQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLE 231
           P  P SI  L KL +L L +         LSG               EIP  +  L +LE
Sbjct: 275 P-IPPSIFSLQKLISLDLSD-------NSLSG---------------EIPELVIQLQNLE 311

Query: 232 SLNLSGNNIE-SLPTSISQLSRLRWLYL 258
            L+L  NN    +P +++ L RL+ L L
Sbjct: 312 ILHLFSNNFTGKIPVALTSLPRLQVLQL 339

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.3 bits (103), Expect = 5e-06
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 206 SLKKLELGDCEIMEIPPDI-GCLSSLESLNLSGNNIESL-PTSISQLSRLRWLYLVNC 261
           +LK L+L +  +  IP      L +L+ L+LSGNN+ S+ P + S L  LR L L   
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 44.8 bits (105), Expect = 5e-05
 Identities = 62/180 (34%), Positives = 82/180 (45%), Gaps = 28/180 (15%)

Query: 137 LKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDL----NKLETLSLFEC 192
           L+ L+++G  +L SLP     L  L      L  +P  PS +  L    N+L +L     
Sbjct: 244 LRTLEVSG-NQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLP---- 298

Query: 193 RGLVLPPLLSGLS-------SLKKLELGDCEIMEIPPDIGCL----SSLESLNLSGNNIE 241
              VLPP L  LS       SL  L    C++      +  L    S L+ L++S N + 
Sbjct: 299 ---VLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA 355

Query: 242 SLPTSISQLSRLRWLYLVNCVKLQSLPELPLLLVMLGASDCKRLQFLPELTSCLEELDAS 301
           SLPT  S+L +L W Y     +L SLP LP  L  L  S   RL  LP L S L+EL  S
Sbjct: 356 SLPTLPSELYKL-WAY---NNRLTSLPALPSGLKELIVSG-NRLTSLPVLPSELKELMVS 410

Length = 788

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.0 bits (104), Expect = 8e-05
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 3/68 (4%)

Query: 193 RGLVLPPLLSGLSSLKKLELGDCEIM-EIPPDIGCLSSLESLNLSGNNIE-SLPTSISQL 250
           RG  +P  +S L  L+ + L    I   IPP +G ++SLE L+LS N+   S+P S+ QL
Sbjct: 431 RG-FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489

Query: 251 SRLRWLYL 258
           + LR L L
Sbjct: 490 TSLRILNL 497

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 23/62 (37%), Positives = 34/62 (54%)

Query: 103 FPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLE 162
            P  + K+  L+ INL   S    +P S+ ++  L+ L L+  +  GS+PESLG L SL 
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 163 RL 164
            L
Sbjct: 494 IL 495

Length = 623

>gnl|CDD|237954 PRK15386, PRK15386, type III secretion protein GogB; Provisional

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 16/146 (10%)

Query: 91  SLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGS 150
            L +  C ++ES P +  +   L EI +E  +N+  LP SI   EGL++L +  C ++  
Sbjct: 56  RLYIKDC-DIESLPVLPNE---LTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISG 109

Query: 151 LPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKL 210
           LPES   ++SLE   +   +I   P+    L  L   S        +  L+S   SLK L
Sbjct: 110 LPES---VRSLEIKGSATDSIKNVPNG---LTSLSINSYNPENQARIDNLIS--PSLKTL 161

Query: 211 ELGDCEIMEIPPDIGCLSSLESLNLS 236
            L  C  + +P  +    SL+S+ L 
Sbjct: 162 SLTGCSNIILPEKLP--ESLQSITLH 185

Length = 426

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.2 bits (82), Expect = 0.003
 Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 183 KLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIMEIPPD-IGCLSSLESLNLSGNNI 240
            L++L L   R  V+P     GL +LK L+L    +  I P+    L SL SL+LSGNN+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 35.2 bits (82), Expect = 0.003
 Identities = 16/39 (41%), Positives = 27/39 (69%), Gaps = 1/39 (2%)

Query: 206 SLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLP 244
           +L+ L+L + +I ++PP +  L +LE+L+LSGN I  L 
Sbjct: 2   NLETLDLSNNQITDLPP-LSNLPNLETLDLSGNKITDLS 39

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 38.7 bits (90), Expect = 0.004
 Identities = 68/283 (24%), Positives = 118/283 (41%), Gaps = 37/283 (13%)

Query: 13  PQNIHFISSIKI-DCYKCVNLREFPRISGNVVELNLMCTP----IEEVPLSIECLPNLET 67
           P +I   SS+K+ D    V + + P    N+  L  +       + ++P  +  + +L+ 
Sbjct: 157 PNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216

Query: 68  LEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKEL 127
           + + + N    +   I  L SL  LDL Y       P  L  ++ L+ + L +      +
Sbjct: 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI 276

Query: 128 PSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLA------IPQAPSSI--- 178
           P SI +L+ L  L L+  +  G +PE +  L++LE LH  L +      IP A +S+   
Sbjct: 277 PPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILH--LFSNNFTGKIPVALTSLPRL 334

Query: 179 ---------------VDLNKLETLSLFECRGLVL----PPLLSGLSSLKKLELGDCEIM- 218
                           +L K   L++ +     L    P  L    +L KL L    +  
Sbjct: 335 QVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEG 394

Query: 219 EIPPDIGCLSSLESLNLSGNNIE-SLPTSISQLSRLRWLYLVN 260
           EIP  +G   SL  + L  N+    LP+  ++L  + +L + N
Sbjct: 395 EIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISN 437

Length = 968

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	369
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.95
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.94
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.93
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.91
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.91
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.91
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.88
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.82
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.78
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.77
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.77
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.75
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.74
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.74
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.73
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.7
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.64
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.6
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.59
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.58
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.57
KOG4341	483	consensus F-box protein containing LRR [General fu	99.43
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.4
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.33
KOG4341	483	consensus F-box protein containing LRR [General fu	99.18
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.16
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.16
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.15
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.15
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.13
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.12
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.08
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.06
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.04
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.03
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.01
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.94
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.8
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.8
PLN03150	623	hypothetical protein; Provisional	98.67
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.62
PLN03150	623	hypothetical protein; Provisional	98.51
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.47
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.44
PRK15386	426	type III secretion protein GogB; Provisional	98.43
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.42
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.38
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.37
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.24
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.21
PRK15386	426	type III secretion protein GogB; Provisional	98.17
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.15
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.1
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.04
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.98
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.88
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.84
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.76
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.63
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.62
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.6
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.58
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.38
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.18
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.94
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.94
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.76
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.39
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.37
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.97
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.38
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.05
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.88
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.08
KOG4308	478	consensus LRR-containing protein [Function unknown	92.09
smart00370	26	LRR Leucine-rich repeats, outliers.	91.72
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.72
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	90.86
KOG4308	478	consensus LRR-containing protein [Function unknown	90.04
KOG0473	326	consensus Leucine-rich repeat protein [Function un	83.77
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	83.23

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.95  E-value=1.6e-27  Score=243.50  Aligned_cols=217  Identities=23%  Similarity=0.274  Sum_probs=147.6

Q ss_pred             CCCCcCCccCCCCC-CCCCccEEecCCCCCccccCCccC---CeeEEecCCccCc-ccCccCCCCCCCCEEeCcCCcccc
Q 017542            3 MAGCESLRCFPQNI-HFISSIKIDCYKCVNLREFPRISG---NVVELNLMCTPIE-EVPLSIECLPNLETLEMSFCNSLK   77 (369)
Q Consensus         3 l~~c~~l~~~p~~~-~~~~L~~L~l~~~~~l~~~~~~~~---~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~   77 (369)
                      +.++.--..+|..+ .+++|++|++++|.....+|..+.   +|++|++++|.+. .+|..+..+++|++|++++|....
T Consensus       147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  226 (968)
T PLN00113        147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG  226 (968)
T ss_pred             CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC
Confidence            44443333566655 778888888888875556665544   7788888777765 566667777888888888777666


Q ss_pred             cccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCC
Q 017542           78 RLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGN  157 (369)
Q Consensus        78 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  157 (369)
                      .+|..++++++|++|++++|.....+|..++.+++|++|++++|...+.+|..+..+++|++|++++|.....+|..+..
T Consensus       227 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~  306 (968)
T PLN00113        227 EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ  306 (968)
T ss_pred             cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcC
Confidence            77777777778888888777666667777777777777777777666666666777777777777776665566666667


Q ss_pred             CcchhhhccCcccCC-CCCcccccCCCCcEEeecCCCC-CCCCccccCCCCCcEEeccCCCCcc
Q 017542          158 LKSLERLHAGLLAIP-QAPSSIVDLNKLETLSLFECRG-LVLPPLLSGLSSLKKLELGDCEIME  219 (369)
Q Consensus       158 l~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~  219 (369)
                      +++|+.|++++|.+. ..|..+..+++|+.|++++|.. ..+|..+..+++|+.|++++|.+.+
T Consensus       307 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~  370 (968)
T PLN00113        307 LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTG  370 (968)
T ss_pred             CCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEe
Confidence            777777777776655 3445566666666666666663 2455555556666666666665543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.94  E-value=6.4e-27  Score=239.02  Aligned_cols=281  Identities=22%  Similarity=0.259  Sum_probs=180.9

Q ss_pred             CCCCCcCCccCCCCC-CCCCccEEecCCCCCccccCCccC---CeeEEecCCccCc-ccCccCCCCCCCCEEeCcCCccc
Q 017542            2 IMAGCESLRCFPQNI-HFISSIKIDCYKCVNLREFPRISG---NVVELNLMCTPIE-EVPLSIECLPNLETLEMSFCNSL   76 (369)
Q Consensus         2 ~l~~c~~l~~~p~~~-~~~~L~~L~l~~~~~l~~~~~~~~---~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~   76 (369)
                      ++.++.-...+|..+ .+++|++|++++|.....+|..++   +|++|++++|.+. .+|..+..+++|++|++++|...
T Consensus       170 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  249 (968)
T PLN00113        170 DLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT  249 (968)
T ss_pred             ECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceec
Confidence            345554344567666 788888888888885556675554   7888888887776 57777788888888888888777


Q ss_pred             ccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccC
Q 017542           77 KRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLG  156 (369)
Q Consensus        77 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  156 (369)
                      +.+|..+.++++|++|++++|......|..+..+++|++|++++|.....+|..+..+++|+.|++++|...+..|..+.
T Consensus       250 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~  329 (968)
T PLN00113        250 GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT  329 (968)
T ss_pred             cccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHh
Confidence            77777788888888888888776666777777888888888887766666777777777888888777766666666677


Q ss_pred             CCcchhhhccCcccCC-CCCcccccCCCCcEEeecCCCC-CCCCccccC------------------------CCCCcEE
Q 017542          157 NLKSLERLHAGLLAIP-QAPSSIVDLNKLETLSLFECRG-LVLPPLLSG------------------------LSSLKKL  210 (369)
Q Consensus       157 ~l~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~~-~~~~~~~~~------------------------~~~L~~L  210 (369)
                      .+++|+.|++++|.+. .+|..+..+++|+.|++++|.. ..+|..+..                        +++|+.|
T Consensus       330 ~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L  409 (968)
T PLN00113        330 SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRV  409 (968)
T ss_pred             cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEE
Confidence            7777777777777765 4555666666777777766652 233444444                        4444444


Q ss_pred             eccCCCCcc-CCCCCCCCCCCCEEEccCCcCC-ccchhhccCCcCcEecccCCcccccCCCC--Ccccceeccccc
Q 017542          211 ELGDCEIME-IPPDIGCLSSLESLNLSGNNIE-SLPTSISQLSRLRWLYLVNCVKLQSLPEL--PLLLVMLGASDC  282 (369)
Q Consensus       211 ~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~L~~L~l~~c  282 (369)
                      ++++|.+.+ ++..+..++.|+.|++++|.++ .++..+..+++|+.|++++|.....+|..  ..+|+.|++++|
T Consensus       410 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n  485 (968)
T PLN00113        410 RLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRN  485 (968)
T ss_pred             ECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCC
Confidence            444444443 3333444455555555555444 33333444555555555555333333321  134455555444

>PLN03210 Resistant to P

Probab=99.93  E-value=2.2e-25  Score=228.65  Aligned_cols=313  Identities=27%  Similarity=0.422  Sum_probs=219.8

Q ss_pred             CCCCC-CC-CCccEEecCCCCCccccCCccC--CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCC
Q 017542           12 FPQNI-HF-ISSIKIDCYKCVNLREFPRISG--NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLK   87 (369)
Q Consensus        12 ~p~~~-~~-~~L~~L~l~~~~~l~~~~~~~~--~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~   87 (369)
                      +|..+ .+ +.|+.|++.++. ++.+|..+.  +|++|++.++.+..+|..+..+++|++|++++|.....+|. ++.++
T Consensus       580 lp~~~~~lp~~Lr~L~~~~~~-l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~  657 (1153)
T PLN03210        580 LPEGFDYLPPKLRLLRWDKYP-LRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMAT  657 (1153)
T ss_pred             cCcchhhcCcccEEEEecCCC-CCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCC
Confidence            45555 34 359999999987 888887665  99999999999999998888999999999999887888876 78899


Q ss_pred             CCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccC
Q 017542           88 SLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAG  167 (369)
Q Consensus        88 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  167 (369)
                      +|+.|++++|.....+|..+..+++|++|++++|..+..+|..+ ++++|+.|++++|..+..+|..   ..+|++|+++
T Consensus       658 ~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~  733 (1153)
T PLN03210        658 NLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLD  733 (1153)
T ss_pred             cccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecC
Confidence            99999999998888899999999999999999998888888755 7899999999999877776643   4567788888


Q ss_pred             cccCCCCCcccccCC-------------------------------CCcEEeecCCC-CCCCCccccCCCCCcEEeccCC
Q 017542          168 LLAIPQAPSSIVDLN-------------------------------KLETLSLFECR-GLVLPPLLSGLSSLKKLELGDC  215 (369)
Q Consensus       168 ~~~~~~~~~~l~~~~-------------------------------~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~  215 (369)
                      ++.+..+|..+ .++                               +|+.|++++|. ...+|..++++++|+.|++++|
T Consensus       734 ~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C  812 (1153)
T PLN03210        734 ETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENC  812 (1153)
T ss_pred             CCccccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCC
Confidence            88877666543 233                               45555555554 3345555555556666666555


Q ss_pred             CCcc-CCCCCCCCCCCCEEEccCC-cCCccchhhccCCcCcEecccCCcccccCCC---CCcccceeccccccccccCCC
Q 017542          216 EIME-IPPDIGCLSSLESLNLSGN-NIESLPTSISQLSRLRWLYLVNCVKLQSLPE---LPLLLVMLGASDCKRLQFLPE  290 (369)
Q Consensus       216 ~~~~-~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~c~~L~~l~~  290 (369)
                      ...+ +|... .+++|++|++++| .+..+|..   .++|++|++++| .++.+|.   .+++|+.|++.+|++|+.++.
T Consensus       813 ~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~  887 (1153)
T PLN03210        813 INLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRT-GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL  887 (1153)
T ss_pred             CCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCC-CCccChHHHhcCCCCCEEECCCCCCcCccCc
Confidence            4322 44332 4555666666655 23333321   245666666555 4555553   346788888999999988876


Q ss_pred             ch---hhhHHHhHHHHHhhhcccccccc------------CCCCCcEEEecCccCcchhhH
Q 017542          291 LT---SCLEELDASILQALSNRTGERLS------------KHMSPVQLIFANCLKLNESIW  336 (369)
Q Consensus       291 ~~---~~l~~l~~~~~~~l~~~~~~~~~------------~~~~~~~~~~~~c~~l~~~~~  336 (369)
                      ..   .+++.+++.+|.+++.+.....+            .......+.+.+|.++...++
T Consensus       888 ~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a~  948 (1153)
T PLN03210        888 NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEAL  948 (1153)
T ss_pred             ccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCchhh
Confidence            54   45556678888877655432211            111123456789988887665

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.91  E-value=3.8e-23  Score=212.22  Aligned_cols=272  Identities=31%  Similarity=0.443  Sum_probs=219.3

Q ss_pred             CCccCCCCCCCCCccEEecCCCCCccccCCccC---CeeEEecCCc-cCcccCccCCCCCCCCEEeCcCCcccccccccc
Q 017542            8 SLRCFPQNIHFISSIKIDCYKCVNLREFPRISG---NVVELNLMCT-PIEEVPLSIECLPNLETLEMSFCNSLKRLSTSI   83 (369)
Q Consensus         8 ~l~~~p~~~~~~~L~~L~l~~~~~l~~~~~~~~---~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~   83 (369)
                      .++.+|..+.+.+|+.|++.++. +..++....   +|+.|+++++ .++.+|. +..+++|++|++++|.....+|..+
T Consensus       600 ~l~~lP~~f~~~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si  677 (1153)
T PLN03210        600 PLRCMPSNFRPENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSI  677 (1153)
T ss_pred             CCCCCCCcCCccCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhh
Confidence            46778888888999999999988 788776544   9999999654 4677775 7888999999999999888999889


Q ss_pred             cCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCccc--------
Q 017542           84 CKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESL--------  155 (369)
Q Consensus        84 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--------  155 (369)
                      ..+++|+.|++++|.....+|..+ ++++|++|++++|..+..+|..   .++|++|+++++. +..+|..+        
T Consensus       678 ~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L  752 (1153)
T PLN03210        678 QYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETA-IEEFPSNLRLENLDEL  752 (1153)
T ss_pred             hccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCc-cccccccccccccccc
Confidence            999999999999998888888765 7899999999998777666543   3567777777754 33333221        


Q ss_pred             ----------------------CCCcchhhhccCccc-CCCCCcccccCCCCcEEeecCCC-CCCCCccccCCCCCcEEe
Q 017542          156 ----------------------GNLKSLERLHAGLLA-IPQAPSSIVDLNKLETLSLFECR-GLVLPPLLSGLSSLKKLE  211 (369)
Q Consensus       156 ----------------------~~l~~L~~L~l~~~~-~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~  211 (369)
                                            ...++|+.|++++|. +..+|..+.++++|+.|++++|. ...+|... .+++|+.|+
T Consensus       753 ~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~  831 (1153)
T PLN03210        753 ILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLD  831 (1153)
T ss_pred             cccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEE
Confidence                                  113467888888775 44688889999999999999987 66777654 689999999


Q ss_pred             ccCCCCcc-CCCCCCCCCCCCEEEccCCcCCccchhhccCCcCcEecccCCcccccCCCCC---cccceecccccccccc
Q 017542          212 LGDCEIME-IPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPELP---LLLVMLGASDCKRLQF  287 (369)
Q Consensus       212 l~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~---~~L~~L~l~~c~~L~~  287 (369)
                      +++|.... ++.   ...+|++|++++|.++.+|..+..+++|+.|++++|..++.++...   ++|+.+++.+|++|+.
T Consensus       832 Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~  908 (1153)
T PLN03210        832 LSGCSRLRTFPD---ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE  908 (1153)
T ss_pred             CCCCCccccccc---cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence            99986554 433   2468999999999999999999999999999999999999987643   5788889999999986


Q ss_pred             CCC
Q 017542          288 LPE  290 (369)
Q Consensus       288 l~~  290 (369)
                      +..
T Consensus       909 ~~l  911 (1153)
T PLN03210        909 ASW  911 (1153)
T ss_pred             ccC
Confidence            643

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.91  E-value=1.2e-25  Score=201.01  Aligned_cols=243  Identities=23%  Similarity=0.221  Sum_probs=179.7

Q ss_pred             CCCCccEEecCCCCCccccCCccC---CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCccccccc-ccccCCCCCcE
Q 017542           17 HFISSIKIDCYKCVNLREFPRISG---NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLS-TSICKLKSLRS   91 (369)
Q Consensus        17 ~~~~L~~L~l~~~~~l~~~~~~~~---~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~   91 (369)
                      ++++|+.+++.+|. +..+|.+..   +|+.|++.+|.|..+.. .+..++.|++||++.|.. ..++ ..|..-.++++
T Consensus       100 nl~nLq~v~l~~N~-Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~i-s~i~~~sfp~~~ni~~  177 (873)
T KOG4194|consen  100 NLPNLQEVNLNKNE-LTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLI-SEIPKPSFPAKVNIKK  177 (873)
T ss_pred             cCCcceeeeeccch-hhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchh-hcccCCCCCCCCCceE
Confidence            78889999998888 888887665   79999999999887654 577788999999998654 4443 45666688999


Q ss_pred             EecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccC
Q 017542           92 LDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAI  171 (369)
Q Consensus        92 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  171 (369)
                      |++++|.+.+.-...|.++.+|..|.++.|+....-+..|+++++|+.|++..|..-..-...|..+++|+.|.+..|.+
T Consensus       178 L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I  257 (873)
T KOG4194|consen  178 LNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDI  257 (873)
T ss_pred             EeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCc
Confidence            99999876666667788888999999997765555556788899999999988543222244578888999999998888


Q ss_pred             CCCCc-ccccCCCCcEEeecCCCCCCCCc-cccCCCCCcEEeccCCCCcc-CCCCCCCCCCCCEEEccCCcCCccc-hhh
Q 017542          172 PQAPS-SIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIME-IPPDIGCLSSLESLNLSGNNIESLP-TSI  247 (369)
Q Consensus       172 ~~~~~-~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~-~~~  247 (369)
                      ..+.+ .|..+.++++|+++.|+...+.+ ++-++.+|+.|+++.|.+.. -++.+..+++|++|+|++|+++.++ ..+
T Consensus       258 ~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf  337 (873)
T KOG4194|consen  258 SKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSF  337 (873)
T ss_pred             ccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHH
Confidence            86643 45668888888888888655543 56677788888888888877 3455677788888888888777665 333


Q ss_pred             ccCCcCcEecccCC
Q 017542          248 SQLSRLRWLYLVNC  261 (369)
Q Consensus       248 ~~~~~L~~L~l~~~  261 (369)
                      ..+..|++|++++|
T Consensus       338 ~~L~~Le~LnLs~N  351 (873)
T KOG4194|consen  338 RVLSQLEELNLSHN  351 (873)
T ss_pred             HHHHHhhhhccccc
Confidence            44444444444444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.91  E-value=1.2e-26  Score=209.25  Aligned_cols=274  Identities=28%  Similarity=0.369  Sum_probs=222.3

Q ss_pred             CCCCC-CCCCccEEecCCCCCccccCCccC---CeeEEecCCccCcccCcc-CCCCCCCCEEeCcCCcccccccccccCC
Q 017542           12 FPQNI-HFISSIKIDCYKCVNLREFPRISG---NVVELNLMCTPIEEVPLS-IECLPNLETLEMSFCNSLKRLSTSICKL   86 (369)
Q Consensus        12 ~p~~~-~~~~L~~L~l~~~~~l~~~~~~~~---~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~   86 (369)
                      +|+.+ .+..|..|++++|. ++++|..+.   ++-.|++++|.|..||.. +.++..|-+||+++| ..+.+|+.+.++
T Consensus        95 iP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL  172 (1255)
T KOG0444|consen   95 IPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRL  172 (1255)
T ss_pred             CCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHH
Confidence            66655 99999999999999 999998776   888999999999999874 568888999999985 566778888889


Q ss_pred             CCCcEEecCCCcCCccCchhhhccCccceeeccccccc-cccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhc
Q 017542           87 KSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNI-KELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLH  165 (369)
Q Consensus        87 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  165 (369)
                      .+|+.|++++|+....--..+.++++|+.|.+++.+.. ..+|.++..+.+|..++++. +.+..+|+.+.++++|+.|+
T Consensus       173 ~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLN  251 (1255)
T KOG0444|consen  173 SMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLN  251 (1255)
T ss_pred             hhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheec
Confidence            99999999998655432333446777888888865443 47888888888888888887 55677788888888899999


Q ss_pred             cCcccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCc--cCCCCCCCCCCCCEEEccCCcCCcc
Q 017542          166 AGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIM--EIPPDIGCLSSLESLNLSGNNIESL  243 (369)
Q Consensus       166 l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~l~~~  243 (369)
                      +++|.++.+........+|++|++++|+.+.+|+.+.++++|+.|.+.+|++.  ++|..++.+..|+.+..++|.+.-+
T Consensus       252 LS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElV  331 (1255)
T KOG0444|consen  252 LSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELV  331 (1255)
T ss_pred             cCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccC
Confidence            99998887777777788889999999988888888888888888888888764  3888888888888888888888888


Q ss_pred             chhhccCCcCcEecccCCcccccCCC---CCcccceeccccccccccCC
Q 017542          244 PTSISQLSRLRWLYLVNCVKLQSLPE---LPLLLVMLGASDCKRLQFLP  289 (369)
Q Consensus       244 ~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~c~~L~~l~  289 (369)
                      |.+++.|+.|+.|.++.| .+..+|+   ..+.|+.|++...++|-.=|
T Consensus       332 PEglcRC~kL~kL~L~~N-rLiTLPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  332 PEGLCRCVKLQKLKLDHN-RLITLPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             chhhhhhHHHHHhccccc-ceeechhhhhhcCCcceeeccCCcCccCCC
Confidence            888888999999998887 4555665   44778888888888876443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.91  E-value=6.9e-26  Score=202.60  Aligned_cols=273  Identities=23%  Similarity=0.181  Sum_probs=156.8

Q ss_pred             CCccCCCCC-CCCCccEEecCCCCCccccCC----ccCCeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcccccccc
Q 017542            8 SLRCFPQNI-HFISSIKIDCYKCVNLREFPR----ISGNVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLST   81 (369)
Q Consensus         8 ~l~~~p~~~-~~~~L~~L~l~~~~~l~~~~~----~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~   81 (369)
                      .|+.+|... ...+++.|++.+|. +.++..    ..+.|+.|+++-|.|.+++. .+..-.++++|++++|...+.-..
T Consensus       113 ~Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~  191 (873)
T KOG4194|consen  113 ELTRIPRFGHESGHLEKLDLRHNL-ISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETG  191 (873)
T ss_pred             hhhhcccccccccceeEEeeeccc-cccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccc
Confidence            355667666 44557777777776 555431    22266666666666666654 344445666666666555443344


Q ss_pred             cccCCCCCcEEecCCCcCCccCchhhhccCccceeecccccccc------------------------ccchhhhcCCCC
Q 017542           82 SICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIK------------------------ELPSSIENLEGL  137 (369)
Q Consensus        82 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~------------------------~~~~~~~~l~~L  137 (369)
                      .|..+.+|..|.+++|...+..+..|.++++|+.|++..|+.-.                        --..+|..+.++
T Consensus       192 ~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~km  271 (873)
T KOG4194|consen  192 HFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKM  271 (873)
T ss_pred             cccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeeccc
Confidence            55556666666666654444444555556666666666554322                        222233444555


Q ss_pred             CeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCC-CcccccCCCCcEEeecCCCCCCCCc-cccCCCCCcEEeccCC
Q 017542          138 KQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQA-PSSIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDC  215 (369)
Q Consensus       138 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~  215 (369)
                      ++|++..|+....-..++.+++.|+.|++++|.|..+ ++.+..+++|+.|+++.|.+..+++ .+..+..|++|.+++|
T Consensus       272 e~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N  351 (873)
T KOG4194|consen  272 EHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHN  351 (873)
T ss_pred             ceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccccc
Confidence            5555555443333334555666666666666666633 3555666677777777766665553 4555566666666666


Q ss_pred             CCccCCCC-CCCCCCCCEEEccCCcCC----ccchhhccCCcCcEecccCCcccccCCC----CCcccceeccccc
Q 017542          216 EIMEIPPD-IGCLSSLESLNLSGNNIE----SLPTSISQLSRLRWLYLVNCVKLQSLPE----LPLLLVMLGASDC  282 (369)
Q Consensus       216 ~~~~~~~~-~~~~~~L~~L~l~~~~l~----~~~~~~~~~~~L~~L~l~~~~~l~~~~~----~~~~L~~L~l~~c  282 (369)
                      .+..+.+. +..+.+|++|||++|.++    +-...+.++++|+.|.+.+| ++++++.    .+++||.|++.+.
T Consensus       352 si~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~N  426 (873)
T KOG4194|consen  352 SIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDN  426 (873)
T ss_pred             chHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCC
Confidence            66654332 455667777777777655    22334556777777777776 6666664    3356666666554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.88  E-value=1.1e-24  Score=196.57  Aligned_cols=259  Identities=23%  Similarity=0.305  Sum_probs=228.0

Q ss_pred             cCCccCCCCC-CCCCccEEecCCCCCccccCCccC----CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccc
Q 017542            7 ESLRCFPQNI-HFISSIKIDCYKCVNLREFPRISG----NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLST   81 (369)
Q Consensus         7 ~~l~~~p~~~-~~~~L~~L~l~~~~~l~~~~~~~~----~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~   81 (369)
                      ..|.+.|... .-+++-+|++++|. +..+|....    .|-.|++++|++..+|.....+.+|++|++++|+....-..
T Consensus       113 NqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLr  191 (1255)
T KOG0444|consen  113 NQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLR  191 (1255)
T ss_pred             hhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHh
Confidence            4677889888 77889999999999 999997655    67789999999999999899999999999999886554444


Q ss_pred             cccCCCCCcEEecCCCcCC-ccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcc
Q 017542           82 SICKLKSLRSLDLSYCINL-ESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKS  160 (369)
Q Consensus        82 ~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~  160 (369)
                      .+..+.+|++|.+++.+.. ..+|..+..+.+|..+|++ ++.+..+|..+.++++|+.|++++|. ++.+.-..+...+
T Consensus       192 QLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS-~N~Lp~vPecly~l~~LrrLNLS~N~-iteL~~~~~~W~~  269 (1255)
T KOG0444|consen  192 QLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS-ENNLPIVPECLYKLRNLRRLNLSGNK-ITELNMTEGEWEN  269 (1255)
T ss_pred             cCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc-ccCCCcchHHHhhhhhhheeccCcCc-eeeeeccHHHHhh
Confidence            5666889999999987654 4589999999999999999 56688889999999999999999954 5555555677889


Q ss_pred             hhhhccCcccCCCCCcccccCCCCcEEeecCCC--CCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCC
Q 017542          161 LERLHAGLLAIPQAPSSIVDLNKLETLSLFECR--GLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGN  238 (369)
Q Consensus       161 L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~  238 (369)
                      |+.|+++.|.++.+|+.+..+++|+.|...+|.  ...+|..++++..|+.+..++|.+.-+|..+..|+.|+.|.|++|
T Consensus       270 lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~N  349 (1255)
T KOG0444|consen  270 LETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHN  349 (1255)
T ss_pred             hhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccccc
Confidence            999999999999999999999999999999998  567899999999999999999999889999999999999999999


Q ss_pred             cCCccchhhccCCcCcEecccCCcccccCC
Q 017542          239 NIESLPTSISQLSRLRWLYLVNCVKLQSLP  268 (369)
Q Consensus       239 ~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~  268 (369)
                      .+..+|+++--++.|+.||+..|+.+.--|
T Consensus       350 rLiTLPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  350 RLITLPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             ceeechhhhhhcCCcceeeccCCcCccCCC
Confidence            999999999999999999999999876543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.82  E-value=6.3e-23  Score=176.14  Aligned_cols=247  Identities=32%  Similarity=0.421  Sum_probs=211.7

Q ss_pred             CccCCCCC-CCCCccEEecCCCCCccccCCccC---CeeEEecCCccCcccCccCCCCCCCCEEeCcCCccccccccccc
Q 017542            9 LRCFPQNI-HFISSIKIDCYKCVNLREFPRISG---NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSIC   84 (369)
Q Consensus         9 l~~~p~~~-~~~~L~~L~l~~~~~l~~~~~~~~---~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~   84 (369)
                      ++.+-... .+..+.++++.+|. +.+.|+..+   .++.++++++++..+|..++..++|+.++.++|. ...+++.++
T Consensus        57 l~~l~~dl~nL~~l~vl~~~~n~-l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~-~~el~~~i~  134 (565)
T KOG0472|consen   57 LEVLREDLKNLACLTVLNVHDNK-LSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNE-LKELPDSIG  134 (565)
T ss_pred             hhhccHhhhcccceeEEEeccch-hhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccc-eeecCchHH
Confidence            34433333 78889999999998 888888777   7888999999999999999999999999999965 456667788


Q ss_pred             CCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhh
Q 017542           85 KLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERL  164 (369)
Q Consensus        85 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  164 (369)
                      .+..|+.++..+| ...+.|..+.++.+|..+++.+|.. ..+|+..-+++.|++++... +.++.+|..++.+.+|+-|
T Consensus       135 ~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~l-~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~L  211 (565)
T KOG0472|consen  135 RLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNKL-KALPENHIAMKRLKHLDCNS-NLLETLPPELGGLESLELL  211 (565)
T ss_pred             HHhhhhhhhcccc-ccccCchHHHHHHHHHHhhccccch-hhCCHHHHHHHHHHhcccch-hhhhcCChhhcchhhhHHH
Confidence            8999999998885 4556788899999999999997664 44555555589999999877 5678899999999999999


Q ss_pred             ccCcccCCCCCcccccCCCCcEEeecCCCCCCCCcc-ccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCcc
Q 017542          165 HAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPL-LSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESL  243 (369)
Q Consensus       165 ~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~  243 (369)
                      ++.+|.+..+| .|.+|+.|++|.++.|....+|.. ...++++..|++..|++.++|+.+.-+++|++||+++|.++.+
T Consensus       212 yL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~L  290 (565)
T KOG0472|consen  212 YLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSL  290 (565)
T ss_pred             HhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccC
Confidence            99999999998 788999999999999998888864 4488999999999999999999988899999999999999999


Q ss_pred             chhhccCCcCcEecccCCc
Q 017542          244 PTSISQLSRLRWLYLVNCV  262 (369)
Q Consensus       244 ~~~~~~~~~L~~L~l~~~~  262 (369)
                      |..++.+ .|++|-+.||+
T Consensus       291 p~sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  291 PYSLGNL-HLKFLALEGNP  308 (565)
T ss_pred             Ccccccc-eeeehhhcCCc
Confidence            9999999 99999999986

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.78  E-value=8.9e-22  Score=169.15  Aligned_cols=258  Identities=29%  Similarity=0.363  Sum_probs=194.8

Q ss_pred             CCccEEecCCCCCccccCCc---cCCeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecC
Q 017542           19 ISSIKIDCYKCVNLREFPRI---SGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLS   95 (369)
Q Consensus        19 ~~L~~L~l~~~~~l~~~~~~---~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~   95 (369)
                      ..++.+.+++|. +..+.+-   ...+.+|++.++....+|..++.+..++.++.++| ....+|..+..+..|..++.+
T Consensus        45 v~l~~lils~N~-l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s  122 (565)
T KOG0472|consen   45 VDLQKLILSHND-LEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHN-KLSELPEQIGSLISLVKLDCS  122 (565)
T ss_pred             cchhhhhhccCc-hhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhhcc
Confidence            346677777776 4444332   22677777777777777777777777777777774 455667777777888888887


Q ss_pred             CCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCC
Q 017542           96 YCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAP  175 (369)
Q Consensus        96 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  175 (369)
                      ++ ....+++.++.+-.|..++..+ +.+...|+++.++.++..+++.++ .....|.....++.|+++++..|-+..+|
T Consensus       123 ~n-~~~el~~~i~~~~~l~dl~~~~-N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~N~L~tlP  199 (565)
T KOG0472|consen  123 SN-ELKELPDSIGRLLDLEDLDATN-NQISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNSNLLETLP  199 (565)
T ss_pred             cc-ceeecCchHHHHhhhhhhhccc-cccccCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhcccchhhhhcCC
Confidence            74 4455667777788888887774 445567777778888888888884 44555555555888999998888888889


Q ss_pred             cccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCC-CCCCCCCEEEccCCcCCccchhhccCCcCc
Q 017542          176 SSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDI-GCLSSLESLNLSGNNIESLPTSISQLSRLR  254 (369)
Q Consensus       176 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~  254 (369)
                      ..++.+.+|..|++.+|....+| .|.+|..|++++++.|.+..+|... ..++++..||+.+|+++.+|+.+..+.+|.
T Consensus       200 ~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~  278 (565)
T KOG0472|consen  200 PELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLE  278 (565)
T ss_pred             hhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhh
Confidence            88998999999999999888888 4788888999999999888877664 478899999999999999999999999999


Q ss_pred             EecccCCcccccCCCCCcc--cceecccccc
Q 017542          255 WLYLVNCVKLQSLPELPLL--LVMLGASDCK  283 (369)
Q Consensus       255 ~L~l~~~~~l~~~~~~~~~--L~~L~l~~c~  283 (369)
                      +||+++| .++++|....+  |++|.+.|.|
T Consensus       279 rLDlSNN-~is~Lp~sLgnlhL~~L~leGNP  308 (565)
T KOG0472|consen  279 RLDLSNN-DISSLPYSLGNLHLKFLALEGNP  308 (565)
T ss_pred             hhcccCC-ccccCCcccccceeeehhhcCCc
Confidence            9999988 67777765443  4555566554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.77  E-value=4.5e-18  Score=164.76  Aligned_cols=241  Identities=20%  Similarity=0.284  Sum_probs=178.9

Q ss_pred             CCccEEecCCCCCccccCCccC-CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCC
Q 017542           19 ISSIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYC   97 (369)
Q Consensus        19 ~~L~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~   97 (369)
                      .+...|+++++. +..+|..++ .++.|++++|.++.+|..+.  ++|++|++++|. .+.+|..+.  .+|+.|++++|
T Consensus       178 ~~~~~L~L~~~~-LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~N  251 (754)
T PRK15370        178 NNKTELRLKILG-LTTIPACIPEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELSIN  251 (754)
T ss_pred             cCceEEEeCCCC-cCcCCcccccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECcCC
Confidence            346788898877 888887555 89999999999998887543  589999999875 446665443  57999999997


Q ss_pred             cCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcc
Q 017542           98 INLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSS  177 (369)
Q Consensus        98 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  177 (369)
                      ... .+|..+.  .+|++|++++|. +..+|..+.  ++|+.|++++|. +..+|..+.  ++|+.|++++|.+..+|..
T Consensus       252 ~L~-~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~  322 (754)
T PRK15370        252 RIT-ELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSNSLTALPET  322 (754)
T ss_pred             ccC-cCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCc-cccCcccch--hhHHHHHhcCCccccCCcc
Confidence            654 5666543  579999998654 445665443  589999999864 455664432  4789999999998887765


Q ss_pred             cccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccchhhccCCcCcEec
Q 017542          178 IVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLY  257 (369)
Q Consensus       178 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~  257 (369)
                      +  .++|+.|++++|....+|..+.  ++|+.|++++|.+..+|..+  .++|++|++++|.++.+|..+.  +.|+.|+
T Consensus       323 l--~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~Ld  394 (754)
T PRK15370        323 L--PPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPENLP--AALQIMQ  394 (754)
T ss_pred             c--cccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCHhHH--HHHHHHh
Confidence            4  3689999999998877876553  68999999999988777644  3689999999999998887654  3688999


Q ss_pred             ccCCcccccCCCCC-------cccceecccccc
Q 017542          258 LVNCVKLQSLPELP-------LLLVMLGASDCK  283 (369)
Q Consensus       258 l~~~~~l~~~~~~~-------~~L~~L~l~~c~  283 (369)
                      +++| .++.+|...       +.+..+++.+.+
T Consensus       395 Ls~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        395 ASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             hccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence            9988 566766532       344556665543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.77  E-value=5.9e-18  Score=163.14  Aligned_cols=231  Identities=22%  Similarity=0.195  Sum_probs=128.4

Q ss_pred             CCCCcCCccCCCCCCCCCccEEecCCCCCccccCCccCCeeEEecCCccCcccCccCCCCCCCCEEeCcCCccccccccc
Q 017542            3 MAGCESLRCFPQNIHFISSIKIDCYKCVNLREFPRISGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTS   82 (369)
Q Consensus         3 l~~c~~l~~~p~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~   82 (369)
                      +.++ +++++|..+ .++|+.|++.+|. +..+|...++|++|++++|.++.+|..   .++|+.|++++|. ...+|..
T Consensus       208 Ls~~-~LtsLP~~l-~~~L~~L~L~~N~-Lt~LP~lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~-L~~Lp~l  280 (788)
T PRK15387        208 VGES-GLTTLPDCL-PAHITTLVIPDNN-LTSLPALPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP-LTHLPAL  280 (788)
T ss_pred             cCCC-CCCcCCcch-hcCCCEEEccCCc-CCCCCCCCCCCcEEEecCCccCcccCc---ccccceeeccCCc-hhhhhhc
Confidence            3443 677888866 3578999999887 888888777999999999998888753   3678888888764 3344432


Q ss_pred             ccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchh
Q 017542           83 ICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLE  162 (369)
Q Consensus        83 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~  162 (369)
                         ..+|+.|++++|.. ..+|.   ..++|++|++++|.. ..+|..   ..+|+.|++++|. ++.+|..   ..+|+
T Consensus       281 ---p~~L~~L~Ls~N~L-t~LP~---~p~~L~~LdLS~N~L-~~Lp~l---p~~L~~L~Ls~N~-L~~LP~l---p~~Lq  345 (788)
T PRK15387        281 ---PSGLCKLWIFGNQL-TSLPV---LPPGLQELSVSDNQL-ASLPAL---PSELCKLWAYNNQ-LTSLPTL---PSGLQ  345 (788)
T ss_pred             ---hhhcCEEECcCCcc-ccccc---cccccceeECCCCcc-ccCCCC---cccccccccccCc-ccccccc---ccccc
Confidence               24566777776543 33443   235677777775533 233321   1234444444432 2223321   12344


Q ss_pred             hhccCcccCCCCCcccc-----------------cCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCC
Q 017542          163 RLHAGLLAIPQAPSSIV-----------------DLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIG  225 (369)
Q Consensus       163 ~L~l~~~~~~~~~~~l~-----------------~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  225 (369)
                      .|++++|.++.+|....                 ...+|+.|++++|....+|..   .++|+.|++++|.+..+|..  
T Consensus       346 ~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~l--  420 (788)
T PRK15387        346 ELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPML--  420 (788)
T ss_pred             eEecCCCccCCCCCCCcccceehhhccccccCcccccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCcc--
Confidence            45555544444432110                 013455555555554444432   23455555555555554432  


Q ss_pred             CCCCCCEEEccCCcCCccchhhccCCcCcEecccCC
Q 017542          226 CLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNC  261 (369)
Q Consensus       226 ~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~  261 (369)
                       +.+|+.|++++|.++.+|..+..+++|+.|++++|
T Consensus       421 -~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N  455 (788)
T PRK15387        421 -PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGN  455 (788)
T ss_pred             -hhhhhhhhhccCcccccChHHhhccCCCeEECCCC
Confidence             23455555555555555555555555555555555

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.75  E-value=3.5e-18  Score=165.54  Aligned_cols=233  Identities=23%  Similarity=0.354  Sum_probs=183.8

Q ss_pred             CCccCCCCCCCCCccEEecCCCCCccccCCccC-CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCC
Q 017542            8 SLRCFPQNIHFISSIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKL   86 (369)
Q Consensus         8 ~l~~~p~~~~~~~L~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~   86 (369)
                      +++++|..+ .++++.|++++|. +..+|.... +|++|++++|.++.+|..+.  ++|+.|++++|... .+|..+.  
T Consensus       189 ~LtsLP~~I-p~~L~~L~Ls~N~-LtsLP~~l~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--  261 (754)
T PRK15370        189 GLTTIPACI-PEQITTLILDNNE-LKSLPENLQGNIKTLYANSNQLTSIPATLP--DTIQEMELSINRIT-ELPERLP--  261 (754)
T ss_pred             CcCcCCccc-ccCCcEEEecCCC-CCcCChhhccCCCEEECCCCccccCChhhh--ccccEEECcCCccC-cCChhHh--
Confidence            577788765 4679999999998 888887555 99999999999999887543  58999999997654 6776554  


Q ss_pred             CCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhcc
Q 017542           87 KSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHA  166 (369)
Q Consensus        87 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  166 (369)
                      .+|+.|++++|.. ..+|..+.  ++|++|++++|. +..+|..+.  ++|+.|++++|. +..+|..+  .++|+.|++
T Consensus       262 s~L~~L~Ls~N~L-~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~l--~~sL~~L~L  332 (754)
T PRK15370        262 SALQSLDLFHNKI-SCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSNS-LTALPETL--PPGLKTLEA  332 (754)
T ss_pred             CCCCEEECcCCcc-CccccccC--CCCcEEECCCCc-cccCcccch--hhHHHHHhcCCc-cccCCccc--cccceeccc
Confidence            5899999998754 45676443  589999999875 445554432  478999999865 44555433  368999999


Q ss_pred             CcccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccchh
Q 017542          167 GLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTS  246 (369)
Q Consensus       167 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~  246 (369)
                      ++|.++.+|..+.  ++|+.|++++|....+|..+.  ++|+.|++++|.+..+|..+.  ..|+.|++++|+++.+|..
T Consensus       333 s~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~s  406 (754)
T PRK15370        333 GENALTSLPASLP--PELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLPES  406 (754)
T ss_pred             cCCccccCChhhc--CcccEEECCCCCCCcCChhhc--CCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcccCchh
Confidence            9999998887663  799999999999888886553  689999999999998877543  4799999999999988765


Q ss_pred             h----ccCCcCcEecccCCc
Q 017542          247 I----SQLSRLRWLYLVNCV  262 (369)
Q Consensus       247 ~----~~~~~L~~L~l~~~~  262 (369)
                      +    +.++++..+++.+|+
T Consensus       407 l~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        407 LPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             HHHHhhcCCCccEEEeeCCC
Confidence            4    345889999999996

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.74  E-value=8e-20  Score=171.99  Aligned_cols=72  Identities=28%  Similarity=0.315  Sum_probs=44.3

Q ss_pred             ccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCC
Q 017542          126 ELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLP  198 (369)
Q Consensus       126 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  198 (369)
                      .+|.|++.+.+|+.+.+..|. +..+|..+....+|+.+.+..|.+..+|......+.|++|++..|....+|
T Consensus       255 ~lp~wi~~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp  326 (1081)
T KOG0618|consen  255 NLPEWIGACANLEALNANHNR-LVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLP  326 (1081)
T ss_pred             cchHHHHhcccceEecccchh-HHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccc
Confidence            344555666666666666533 344555555566666666666666666666666777777777666654444

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.74  E-value=1.3e-19  Score=170.68  Aligned_cols=263  Identities=26%  Similarity=0.328  Sum_probs=180.5

Q ss_pred             CCCccEEecCCCCCccccCCccC-CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCC
Q 017542           18 FISSIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSY   96 (369)
Q Consensus        18 ~~~L~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~   96 (369)
                      -++++.|+..+|......+...+ +|++++++.+.+..+|.++..+.+|+.++..+|.. ..+|..+....+|+.|.+.+
T Consensus       218 g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~  296 (1081)
T KOG0618|consen  218 GPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAY  296 (1081)
T ss_pred             CcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhh
Confidence            44566666666663322333333 77777777777777777677777777777777544 55565566667777777766


Q ss_pred             CcCCccCchhhhccCccceeeccccccccccchh-hhcCC-CCCeEeecCCCCCCCCCc-ccCCCcchhhhccCcccCC-
Q 017542           97 CINLESFPEILEKMELLEEINLEEASNIKELPSS-IENLE-GLKQLKLTGCTKLGSLPE-SLGNLKSLERLHAGLLAIP-  172 (369)
Q Consensus        97 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~-~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~-  172 (369)
                      | ....+|.....++.|++|++..|.. ..+|.. +.... +++.++.+. ..+...|. .-.....|+.|++.+|.++ 
T Consensus       297 n-el~yip~~le~~~sL~tLdL~~N~L-~~lp~~~l~v~~~~l~~ln~s~-n~l~~lp~~~e~~~~~Lq~LylanN~Ltd  373 (1081)
T KOG0618|consen  297 N-ELEYIPPFLEGLKSLRTLDLQSNNL-PSLPDNFLAVLNASLNTLNVSS-NKLSTLPSYEENNHAALQELYLANNHLTD  373 (1081)
T ss_pred             h-hhhhCCCcccccceeeeeeehhccc-cccchHHHhhhhHHHHHHhhhh-ccccccccccchhhHHHHHHHHhcCcccc
Confidence            4 3445566666677777777775543 333332 22222 244444444 22333331 1234567899999999887 


Q ss_pred             CCCcccccCCCCcEEeecCCCCCCCCc-cccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccchhhccCC
Q 017542          173 QAPSSIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLS  251 (369)
Q Consensus       173 ~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~  251 (369)
                      ..-..+....+|+.|++++|....+|+ .+.+++.|+.|+++||++..++..+..++.|++|...+|.+..+| .+..++
T Consensus       374 ~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~  452 (1081)
T KOG0618|consen  374 SCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLP  452 (1081)
T ss_pred             cchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcC
Confidence            333567778899999999999888886 677889999999999999999988889999999999999999999 788899


Q ss_pred             cCcEecccCCcccccC--CC-CC-cccceeccccccccc
Q 017542          252 RLRWLYLVNCVKLQSL--PE-LP-LLLVMLGASDCKRLQ  286 (369)
Q Consensus       252 ~L~~L~l~~~~~l~~~--~~-~~-~~L~~L~l~~c~~L~  286 (369)
                      .|+.+|++.| .++.+  +. .+ +.|++|+++|...+.
T Consensus       453 qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~l~  490 (1081)
T KOG0618|consen  453 QLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTRLV  490 (1081)
T ss_pred             cceEEecccc-hhhhhhhhhhCCCcccceeeccCCcccc
Confidence            9999999877 44432  22 34 789999999887643

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.73  E-value=5.9e-17  Score=156.27  Aligned_cols=236  Identities=27%  Similarity=0.301  Sum_probs=175.9

Q ss_pred             CccEEecCCCCCccccCCccC-CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCc
Q 017542           20 SSIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCI   98 (369)
Q Consensus        20 ~L~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~   98 (369)
                      .-..|+++++. +..+|+.++ +|+.|++..|.++.+|..   .++|++|++++|. ++.+|..   .++|+.|++++|.
T Consensus       202 ~~~~LdLs~~~-LtsLP~~l~~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~l---p~sL~~L~Ls~N~  273 (788)
T PRK15387        202 GNAVLNVGESG-LTTLPDCLPAHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQ-LTSLPVL---PPGLLELSIFSNP  273 (788)
T ss_pred             CCcEEEcCCCC-CCcCCcchhcCCCEEEccCCcCCCCCCC---CCCCcEEEecCCc-cCcccCc---ccccceeeccCCc
Confidence            35689999997 889998666 999999999999998863   5899999999974 4456642   4689999999975


Q ss_pred             CCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCccc
Q 017542           99 NLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSI  178 (369)
Q Consensus        99 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l  178 (369)
                       ...+|..   .++|+.|++++|. +..+|.   ..++|+.|++++|. +..+|..   ..+|+.|++++|.+..+|.. 
T Consensus       274 -L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~---~p~~L~~LdLS~N~-L~~Lp~l---p~~L~~L~Ls~N~L~~LP~l-  340 (788)
T PRK15387        274 -LTHLPAL---PSGLCKLWIFGNQ-LTSLPV---LPPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNNQLTSLPTL-  340 (788)
T ss_pred             -hhhhhhc---hhhcCEEECcCCc-cccccc---cccccceeECCCCc-cccCCCC---cccccccccccCcccccccc-
Confidence             3455543   3678899999875 445554   34789999999964 4455542   34688899999999888752 


Q ss_pred             ccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccchhhccCCcCcEecc
Q 017542          179 VDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYL  258 (369)
Q Consensus       179 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l  258 (369)
                        ..+|+.|++++|....+|..   .++|+.|++++|.+..+|..   ..+|+.|++++|.++.+|..   .++|+.|++
T Consensus       341 --p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdL  409 (788)
T PRK15387        341 --PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVL---PSELKELMV  409 (788)
T ss_pred             --ccccceEecCCCccCCCCCC---CcccceehhhccccccCccc---ccccceEEecCCcccCCCCc---ccCCCEEEc
Confidence              35899999999998888763   35678888888888877653   35688888888888877743   357888888


Q ss_pred             cCCcccccCCCCCcccceeccccccccccCC
Q 017542          259 VNCVKLQSLPELPLLLVMLGASDCKRLQFLP  289 (369)
Q Consensus       259 ~~~~~l~~~~~~~~~L~~L~l~~c~~L~~l~  289 (369)
                      ++| .++.+|..+.+|+.|+++++ +++.+|
T Consensus       410 S~N-~LssIP~l~~~L~~L~Ls~N-qLt~LP  438 (788)
T PRK15387        410 SGN-RLTSLPMLPSGLLSLSVYRN-QLTRLP  438 (788)
T ss_pred             cCC-cCCCCCcchhhhhhhhhccC-cccccC
Confidence            887 57777776666777777653 344444

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.70  E-value=8.1e-19  Score=134.27  Aligned_cols=174  Identities=28%  Similarity=0.400  Sum_probs=148.3

Q ss_pred             CCCcCCccCCCCCCCCCccEEecCCCCCccccCCccC---CeeEEecCCccCcccCccCCCCCCCCEEeCcCCccccccc
Q 017542            4 AGCESLRCFPQNIHFISSIKIDCYKCVNLREFPRISG---NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLS   80 (369)
Q Consensus         4 ~~c~~l~~~p~~~~~~~L~~L~l~~~~~l~~~~~~~~---~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~   80 (369)
                      +|.+++.++|..+.+.+++.|.+++|. +..+|..+.   +|+.|++++|.++++|..++.+++|+.|++.- +....+|
T Consensus        18 rgiSsf~~~~gLf~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lp   95 (264)
T KOG0617|consen   18 RGISSFEELPGLFNMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILP   95 (264)
T ss_pred             cccccHhhcccccchhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCc
Confidence            466778889999999999999999999 888888776   88899999999999999999999999999987 4566788


Q ss_pred             ccccCCCCCcEEecCCCcCC-ccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCc
Q 017542           81 TSICKLKSLRSLDLSYCINL-ESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLK  159 (369)
Q Consensus        81 ~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~  159 (369)
                      ..|+.++.|++||+.+|+.. ..+|..|-.++.|+-|.+++| ....+|..++++++|+.|.+..++ +-.+|..++.++
T Consensus        96 rgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt  173 (264)
T KOG0617|consen   96 RGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLT  173 (264)
T ss_pred             cccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHH
Confidence            88999999999999987654 458888888999999999965 467788889999999999998855 455678888999


Q ss_pred             chhhhccCcccCCCCCcccccC
Q 017542          160 SLERLHAGLLAIPQAPSSIVDL  181 (369)
Q Consensus       160 ~L~~L~l~~~~~~~~~~~l~~~  181 (369)
                      .|++|++.+|.+..+|..++.+
T Consensus       174 ~lrelhiqgnrl~vlppel~~l  195 (264)
T KOG0617|consen  174 RLRELHIQGNRLTVLPPELANL  195 (264)
T ss_pred             HHHHHhcccceeeecChhhhhh
Confidence            9999999999988887666543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.64  E-value=2.2e-17  Score=148.00  Aligned_cols=221  Identities=24%  Similarity=0.232  Sum_probs=127.0

Q ss_pred             CeeEEecCCccCc-----ccCccCCCCCCCCEEeCcCCccc------ccccccccCCCCCcEEecCCCcCCccCchhhhc
Q 017542           41 NVVELNLMCTPIE-----EVPLSIECLPNLETLEMSFCNSL------KRLSTSICKLKSLRSLDLSYCINLESFPEILEK  109 (369)
Q Consensus        41 ~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~~------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  109 (369)
                      +|++++++++.++     .++..+...++|++++++++...      ..++..+..+++|++|++++|......+..+..
T Consensus        24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  103 (319)
T cd00116          24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES  103 (319)
T ss_pred             hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence            5667777666653     34444556666777777665433      122334555667777777776555444444444


Q ss_pred             cCc---cceeecccccccc----ccchhhhcC-CCCCeEeecCCCCCC----CCCcccCCCcchhhhccCcccCCC----
Q 017542          110 MEL---LEEINLEEASNIK----ELPSSIENL-EGLKQLKLTGCTKLG----SLPESLGNLKSLERLHAGLLAIPQ----  173 (369)
Q Consensus       110 l~~---L~~L~l~~~~~~~----~~~~~~~~l-~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~----  173 (369)
                      +.+   |++|++++|....    .+...+..+ ++|+.|++++|....    .+...+..+++|++|++++|.+..    
T Consensus       104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  183 (319)
T cd00116         104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR  183 (319)
T ss_pred             HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence            444   7777777665432    122234445 677777777765442    122334455667777777766652    


Q ss_pred             -CCcccccCCCCcEEeecCCCCC-----CCCccccCCCCCcEEeccCCCCcc--CC---CC-CCCCCCCCEEEccCCcCC
Q 017542          174 -APSSIVDLNKLETLSLFECRGL-----VLPPLLSGLSSLKKLELGDCEIME--IP---PD-IGCLSSLESLNLSGNNIE  241 (369)
Q Consensus       174 -~~~~l~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~--~~---~~-~~~~~~L~~L~l~~~~l~  241 (369)
                       ++..+...++|++|++++|...     .+...+..+++|++|++++|.+.+  +.   .. ....+.|++|++++|.++
T Consensus       184 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         184 ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence             2223444567777777777643     223345566777777777777664  10   00 012367778888777765


Q ss_pred             -----ccchhhccCCcCcEecccCC
Q 017542          242 -----SLPTSISQLSRLRWLYLVNC  261 (369)
Q Consensus       242 -----~~~~~~~~~~~L~~L~l~~~  261 (369)
                           .+...+..+++|+++++++|
T Consensus       264 ~~~~~~l~~~~~~~~~L~~l~l~~N  288 (319)
T cd00116         264 DDGAKDLAEVLAEKESLLELDLRGN  288 (319)
T ss_pred             cHHHHHHHHHHhcCCCccEEECCCC
Confidence                 23344555677777877777

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.60  E-value=1.1e-16  Score=137.73  Aligned_cols=258  Identities=22%  Similarity=0.241  Sum_probs=170.8

Q ss_pred             EEecCCCCCccccCCccC-CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCC
Q 017542           23 KIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINL  100 (369)
Q Consensus        23 ~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  100 (369)
                      ..+.++-. +.+||..++ .-..+.+..|.|+.||. .|..+++|+.|||++|.....-|..|.+++.|..|.+.+++.+
T Consensus        50 ~VdCr~~G-L~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI  128 (498)
T KOG4237|consen   50 IVDCRGKG-LTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI  128 (498)
T ss_pred             eEEccCCC-cccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence            34444444 788887776 78888888888888876 6888888888898888777777788888888888888775566


Q ss_pred             ccCc-hhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCc-ccCCCcchhhhccCcccCC---CC-
Q 017542          101 ESFP-EILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPE-SLGNLKSLERLHAGLLAIP---QA-  174 (369)
Q Consensus       101 ~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~---~~-  174 (369)
                      +++| ..|+.+..|+.|.+.-|...-.....+..++++..|.+.++. ...+++ .+..+..++.+.+..|.+.   .+ 
T Consensus       129 ~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~  207 (498)
T KOG4237|consen  129 TDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLP  207 (498)
T ss_pred             hhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccc
Confidence            6655 567788888888777665554555677777888888777743 344443 5666677777766665521   00 


Q ss_pred             ---------CcccccCC----------------------CCcEE---eecCC-CCCCCCc-cccCCCCCcEEeccCCCCc
Q 017542          175 ---------PSSIVDLN----------------------KLETL---SLFEC-RGLVLPP-LLSGLSSLKKLELGDCEIM  218 (369)
Q Consensus       175 ---------~~~l~~~~----------------------~L~~L---~l~~~-~~~~~~~-~~~~~~~L~~L~l~~~~~~  218 (369)
                               +-.++...                      .++.+   -.+.+ .+...|. .|.++++|++|++++|+++
T Consensus       208 wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~  287 (498)
T KOG4237|consen  208 WLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT  287 (498)
T ss_pred             hhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc
Confidence                     00011110                      01111   01112 2333332 5778888999999999988


Q ss_pred             cC-CCCCCCCCCCCEEEccCCcCCccc-hhhccCCcCcEecccCCcccccCCC-C---Ccccceecccccc
Q 017542          219 EI-PPDIGCLSSLESLNLSGNNIESLP-TSISQLSRLRWLYLVNCVKLQSLPE-L---PLLLVMLGASDCK  283 (369)
Q Consensus       219 ~~-~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~-~---~~~L~~L~l~~c~  283 (369)
                      .+ ..++.....+++|.|..|++..+. ..+.++..|+.|++.+| +++.+.. .   ..+|.+|.+.+.|
T Consensus       288 ~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N-~it~~~~~aF~~~~~l~~l~l~~Np  357 (498)
T KOG4237|consen  288 RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDN-QITTVAPGAFQTLFSLSTLNLLSNP  357 (498)
T ss_pred             hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCC-eeEEEecccccccceeeeeehccCc
Confidence            85 345677888889999999888766 44577888888999888 5665432 2   2456666655443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.59  E-value=3e-17  Score=125.72  Aligned_cols=157  Identities=30%  Similarity=0.502  Sum_probs=69.4

Q ss_pred             CCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhc
Q 017542           86 LKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLH  165 (369)
Q Consensus        86 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  165 (369)
                      +.+.+.|.+++| ..+.+|..+..+.+|+.|++. |+.++++|..+..+++|+.|++.. +.+...|.+|+.++.|+.|+
T Consensus        32 ~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~-nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levld  108 (264)
T KOG0617|consen   32 MSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLS-NNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLD  108 (264)
T ss_pred             hhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcc-cchhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhh
Confidence            333444444442 222333334444444444444 223334444444444444444443 23334444444444444444


Q ss_pred             cCcccCC--CCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCcc
Q 017542          166 AGLLAIP--QAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESL  243 (369)
Q Consensus       166 l~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~  243 (369)
                      +++|.+.  .+|..|..++.|+.|.+++|....+|...+++++|+.|.+..|.+.++|..++.+..|++|++.+|+++-+
T Consensus       109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vl  188 (264)
T KOG0617|consen  109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVL  188 (264)
T ss_pred             ccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeec
Confidence            4444433  33444444444444444444444444444444444444444444444444444444455555555544444


Q ss_pred             ch
Q 017542          244 PT  245 (369)
Q Consensus       244 ~~  245 (369)
                      |.
T Consensus       189 pp  190 (264)
T KOG0617|consen  189 PP  190 (264)
T ss_pred             Ch
Confidence            43

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.58  E-value=2.2e-16  Score=141.50  Aligned_cols=219  Identities=23%  Similarity=0.185  Sum_probs=154.0

Q ss_pred             EEecCCccCc--ccCccCCCCCCCCEEeCcCCcccc----cccccccCCCCCcEEecCCCcCCc------cCchhhhccC
Q 017542           44 ELNLMCTPIE--EVPLSIECLPNLETLEMSFCNSLK----RLSTSICKLKSLRSLDLSYCINLE------SFPEILEKME  111 (369)
Q Consensus        44 ~L~l~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~l~  111 (369)
                      .|++.++.++  .....+..+++|+.|++++|....    .++..+...++|++++++++....      .++..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            3556566554  333345566789999999987533    345556678889999999875541      2345677788


Q ss_pred             ccceeeccccccccccchhhhcCCC---CCeEeecCCCCCC----CCCcccCCC-cchhhhccCcccCC-----CCCccc
Q 017542          112 LLEEINLEEASNIKELPSSIENLEG---LKQLKLTGCTKLG----SLPESLGNL-KSLERLHAGLLAIP-----QAPSSI  178 (369)
Q Consensus       112 ~L~~L~l~~~~~~~~~~~~~~~l~~---L~~L~l~~~~~~~----~~~~~~~~l-~~L~~L~l~~~~~~-----~~~~~l  178 (369)
                      +|++|++++|......+..+..+.+   |++|++++|....    .+...+..+ ++|+++++++|.++     .+...+
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  161 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL  161 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence            9999999988776555555555554   9999999976542    122334566 88999999999877     233456


Q ss_pred             ccCCCCcEEeecCCCCC-----CCCccccCCCCCcEEeccCCCCcc-----CCCCCCCCCCCCEEEccCCcCCcc--chh
Q 017542          179 VDLNKLETLSLFECRGL-----VLPPLLSGLSSLKKLELGDCEIME-----IPPDIGCLSSLESLNLSGNNIESL--PTS  246 (369)
Q Consensus       179 ~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~l~~~--~~~  246 (369)
                      ..+++|++|++++|...     .++..+...++|+.|++++|.+.+     +...+..+++|++|++++|.+++.  ...
T Consensus       162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l  241 (319)
T cd00116         162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL  241 (319)
T ss_pred             HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence            66789999999998854     223345556799999999998864     333456778999999999988742  221


Q ss_pred             hcc----CCcCcEecccCCc
Q 017542          247 ISQ----LSRLRWLYLVNCV  262 (369)
Q Consensus       247 ~~~----~~~L~~L~l~~~~  262 (369)
                      ...    .+.|++|++++|.
T Consensus       242 ~~~~~~~~~~L~~L~l~~n~  261 (319)
T cd00116         242 ASALLSPNISLLTLSLSCND  261 (319)
T ss_pred             HHHHhccCCCceEEEccCCC
Confidence            222    4799999999983

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.57  E-value=1.5e-16  Score=136.96  Aligned_cols=254  Identities=20%  Similarity=0.177  Sum_probs=188.2

Q ss_pred             cCCccCCCCCCCCCccEEecCCCCCccccCCc-cC---CeeEEecCCccCcccC-ccCCCCCCCCEEeCcCCcccccccc
Q 017542            7 ESLRCFPQNIHFISSIKIDCYKCVNLREFPRI-SG---NVVELNLMCTPIEEVP-LSIECLPNLETLEMSFCNSLKRLST   81 (369)
Q Consensus         7 ~~l~~~p~~~~~~~L~~L~l~~~~~l~~~~~~-~~---~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~   81 (369)
                      .+|+++|..+ .+.-..+.+..|. ++.+|+. |+   +|+.|+++.|.|+.|. ..|..+++|..|-+.+++.++++|.
T Consensus        56 ~GL~eVP~~L-P~~tveirLdqN~-I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k  133 (498)
T KOG4237|consen   56 KGLTEVPANL-PPETVEIRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK  133 (498)
T ss_pred             CCcccCcccC-CCcceEEEeccCC-cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence            5688888887 4456789999998 9999863 44   9999999999999774 5789999999999998778888874


Q ss_pred             -cccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCC----------
Q 017542           82 -SICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGS----------  150 (369)
Q Consensus        82 -~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----------  150 (369)
                       .|.++..|+.|.+.-|...-.....+..+++|..|.+.+|.....-...+..+.+++.+.+..+..+..          
T Consensus       134 ~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~  213 (498)
T KOG4237|consen  134 GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDL  213 (498)
T ss_pred             hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHH
Confidence             678899999999998877777888999999999999998776554444777888888888877653211          


Q ss_pred             --CCcccCC--Cc---c-----------------hhhh--cc-CcccCC-CCC-cccccCCCCcEEeecCCCCCCCC-cc
Q 017542          151 --LPESLGN--LK---S-----------------LERL--HA-GLLAIP-QAP-SSIVDLNKLETLSLFECRGLVLP-PL  200 (369)
Q Consensus       151 --~~~~~~~--l~---~-----------------L~~L--~l-~~~~~~-~~~-~~l~~~~~L~~L~l~~~~~~~~~-~~  200 (369)
                        .+..++.  +.   .                 ++.+  .+ ..+... ..| ..|..+++|++|++++|.++.+. .+
T Consensus       214 a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a  293 (498)
T KOG4237|consen  214 AMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGA  293 (498)
T ss_pred             hhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhh
Confidence              1111111  10   0                 1111  00 111111 112 24677899999999999977665 47


Q ss_pred             ccCCCCCcEEeccCCCCccCCC-CCCCCCCCCEEEccCCcCCcc-chhhccCCcCcEecccCCc
Q 017542          201 LSGLSSLKKLELGDCEIMEIPP-DIGCLSSLESLNLSGNNIESL-PTSISQLSRLRWLYLVNCV  262 (369)
Q Consensus       201 ~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~  262 (369)
                      |.+..+++.|.+..|++..+.. .+.++..|+.|+|.+|+|+.+ |..+.....|.+|++-.|+
T Consensus       294 Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np  357 (498)
T KOG4237|consen  294 FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP  357 (498)
T ss_pred             hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence            8888999999999999887433 367788999999999999944 5667778889999887765

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.43  E-value=6.2e-16  Score=134.14  Aligned_cols=295  Identities=19%  Similarity=0.229  Sum_probs=181.4

Q ss_pred             CeeEEecCCccCc---ccCccCCCCCCCCEEeCcCCccccccc--ccccCCCCCcEEecCCCcCCccCc--hhhhccCcc
Q 017542           41 NVVELNLMCTPIE---EVPLSIECLPNLETLEMSFCNSLKRLS--TSICKLKSLRSLDLSYCINLESFP--EILEKMELL  113 (369)
Q Consensus        41 ~L~~L~l~~~~~~---~l~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L  113 (369)
                      .|+.|++++..-.   .+.....++|+++.|.+.+|..+++..  ..-..+++|++|++..|...+...  .....|++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            5677777544322   233334567777777777777555321  222447777777777766554422  344567777


Q ss_pred             ceeeccccccccc--cchhhhcCCCCCeEeecCCCCCCC--CCcccCCCcchhhhccCcccCCCCCc---ccccCCCCcE
Q 017542          114 EEINLEEASNIKE--LPSSIENLEGLKQLKLTGCTKLGS--LPESLGNLKSLERLHAGLLAIPQAPS---SIVDLNKLET  186 (369)
Q Consensus       114 ~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~---~l~~~~~L~~  186 (369)
                      +++++++|..+..  +.....++..++.+...+|...+.  +...-..+..+.++++..|....-.+   .-..+..|+.
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~  298 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV  298 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence            7777777766552  333345566666666666654332  11111334455556655553221111   1123677888


Q ss_pred             EeecCCCCCC---CCccccCCCCCcEEeccCCCCcc---CCCCCCCCCCCCEEEccCCcCC---ccchhhccCCcCcEec
Q 017542          187 LSLFECRGLV---LPPLLSGLSSLKKLELGDCEIME---IPPDIGCLSSLESLNLSGNNIE---SLPTSISQLSRLRWLY  257 (369)
Q Consensus       187 L~l~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~~~l~---~~~~~~~~~~~L~~L~  257 (369)
                      ++.+++....   +...-.++.+|+.+.+++|+.-+   +...-.+++.|+.+++.++...   .+-..-.+++.|+++.
T Consensus       299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls  378 (483)
T KOG4341|consen  299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS  378 (483)
T ss_pred             hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence            8888877321   11234467888888888887432   3333467788888888887433   2334446788889998


Q ss_pred             ccCCcccccCCCCCcccceeccccccccccCCCchhhhHHHhHHHHHhhhccccccccCCCCCcEEEecCccCcchhhHH
Q 017542          258 LVNCVKLQSLPELPLLLVMLGASDCKRLQFLPELTSCLEELDASILQALSNRTGERLSKHMSPVQLIFANCLKLNESIWA  337 (369)
Q Consensus       258 l~~~~~l~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~l~~~~~~  337 (369)
                      +++|..+++-             +-..+.....+...++.+++.+|+.+++...+.+.....++++.+.+|...+...+.
T Consensus       379 lshce~itD~-------------gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~  445 (483)
T KOG4341|consen  379 LSHCELITDE-------------GIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAIS  445 (483)
T ss_pred             hhhhhhhhhh-------------hhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhH
Confidence            8888777763             112333333445566667777788888888888888888889999999999888887


Q ss_pred             HHHHHHHHHHH
Q 017542          338 DLQKRIRHMII  348 (369)
Q Consensus       338 ~~~~~~~~~~~  348 (369)
                      ....+++.+..
T Consensus       446 ~~~~~lp~i~v  456 (483)
T KOG4341|consen  446 RFATHLPNIKV  456 (483)
T ss_pred             HHHhhCcccee
Confidence            77777766544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.40  E-value=2.2e-13  Score=134.51  Aligned_cols=257  Identities=25%  Similarity=0.313  Sum_probs=159.3

Q ss_pred             CCccCCCCCCCCCccEEecCCCCCccccCCccC--CeeEEecCCcc--CcccCc-cCCCCCCCCEEeCcCCccccccccc
Q 017542            8 SLRCFPQNIHFISSIKIDCYKCVNLREFPRISG--NVVELNLMCTP--IEEVPL-SIECLPNLETLEMSFCNSLKRLSTS   82 (369)
Q Consensus         8 ~l~~~p~~~~~~~L~~L~l~~~~~l~~~~~~~~--~L~~L~l~~~~--~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~   82 (369)
                      ++.+.|........+.+.+.++. ...++....  .|++|-+..+.  +..++. .|..+|.|++||+++|.....+|..
T Consensus       512 ~~~~~~~~~~~~~~rr~s~~~~~-~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~  590 (889)
T KOG4658|consen  512 GLSEIPQVKSWNSVRRMSLMNNK-IEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS  590 (889)
T ss_pred             CccccccccchhheeEEEEeccc-hhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH
Confidence            34456666677788888888887 666665544  78888886664  555554 3677999999999998888999999


Q ss_pred             ccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCC--CCCCcccCCCcc
Q 017542           83 ICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKL--GSLPESLGNLKS  160 (369)
Q Consensus        83 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~  160 (369)
                      ++.+.+||+|+++++ ....+|..+++++.|.+|++..+.....++.....+++|++|.+......  ...-..+..+++
T Consensus       591 I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~  669 (889)
T KOG4658|consen  591 IGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEH  669 (889)
T ss_pred             HhhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccc
Confidence            999999999999985 45578999999999999999977766666777777999999988763311  111123345555


Q ss_pred             hhhhccCcccCCCCCcccccCCCCc----EEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCC-CC-----CC-CCC
Q 017542          161 LERLHAGLLAIPQAPSSIVDLNKLE----TLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPP-DI-----GC-LSS  229 (369)
Q Consensus       161 L~~L~l~~~~~~~~~~~l~~~~~L~----~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~-----~~-~~~  229 (369)
                      |+.+....... .+...+..+..|+    .+.+.++.....+..+..+.+|+.|.+.+|.+.+... +.     .. +++
T Consensus       670 L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~  748 (889)
T KOG4658|consen  670 LENLSITISSV-LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPN  748 (889)
T ss_pred             hhhheeecchh-HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHH
Confidence            55555543332 1112222233333    2222223333444455666777777777777654211 11     00 223


Q ss_pred             CCEEEccCCcCCccchhhccCCcCcEecccCCcccccC
Q 017542          230 LESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSL  267 (369)
Q Consensus       230 L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~  267 (369)
                      +..+.+.++..-..+.+.--.|+|+.|.+.+|+.+.++
T Consensus       749 l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~  786 (889)
T KOG4658|consen  749 LSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDI  786 (889)
T ss_pred             HHHHHhhccccccccchhhccCcccEEEEecccccccC
Confidence            33333333322223333334566777777666655544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.33  E-value=5.9e-13  Score=131.50  Aligned_cols=257  Identities=27%  Similarity=0.364  Sum_probs=186.0

Q ss_pred             ccccCCccC--CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcc-ccccc-ccccCCCCCcEEecCCCcCCccCchhh
Q 017542           32 LREFPRISG--NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNS-LKRLS-TSICKLKSLRSLDLSYCINLESFPEIL  107 (369)
Q Consensus        32 l~~~~~~~~--~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~-~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~  107 (369)
                      ..++|....  ..+...+.++.+..++.. ..++.|++|-+.++.. ...++ ..|..++.|++||+++|.....+|..+
T Consensus       513 ~~~~~~~~~~~~~rr~s~~~~~~~~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I  591 (889)
T KOG4658|consen  513 LSEIPQVKSWNSVRRMSLMNNKIEHIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI  591 (889)
T ss_pred             ccccccccchhheeEEEEeccchhhccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH
Confidence            444554433  888999988888877764 3456899999998762 33333 457789999999999999999999999


Q ss_pred             hccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCC---CCCcccccCCCC
Q 017542          108 EKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIP---QAPSSIVDLNKL  184 (369)
Q Consensus       108 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~~~~~l~~~~~L  184 (369)
                      +.+-+||+|++++ ..+..+|..+.++..|.+|++..+.....++.....+.+|++|.+......   .....+..+.+|
T Consensus       592 ~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L  670 (889)
T KOG4658|consen  592 GELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHL  670 (889)
T ss_pred             hhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccch
Confidence            9999999999995 457789999999999999999988777777666667999999998776533   122345566677


Q ss_pred             cEEeecCCCCCCCCccccCCCCC----cEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccch-h-----hcc-CCcC
Q 017542          185 ETLSLFECRGLVLPPLLSGLSSL----KKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPT-S-----ISQ-LSRL  253 (369)
Q Consensus       185 ~~L~l~~~~~~~~~~~~~~~~~L----~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~-----~~~-~~~L  253 (369)
                      +.+.+..... .+..-+.....|    +.+.+.++........+..+.+|+.|.+.++.+.++.. .     ... ++++
T Consensus       671 ~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l  749 (889)
T KOG4658|consen  671 ENLSITISSV-LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNL  749 (889)
T ss_pred             hhheeecchh-HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHH
Confidence            7777654443 111112222333    24444445555566667888999999999998763321 1     122 6688


Q ss_pred             cEecccCCcccccCC--CCCcccceeccccccccccCCCc
Q 017542          254 RWLYLVNCVKLQSLP--ELPLLLVMLGASDCKRLQFLPEL  291 (369)
Q Consensus       254 ~~L~l~~~~~l~~~~--~~~~~L~~L~l~~c~~L~~l~~~  291 (369)
                      ..+.+.+|...+...  .++++|+.|.+.+|+.++.....
T Consensus       750 ~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~  789 (889)
T KOG4658|consen  750 SKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPK  789 (889)
T ss_pred             HHHHhhccccccccchhhccCcccEEEEecccccccCCCH
Confidence            888888898777765  36799999999999988765443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.18  E-value=2.7e-13  Score=117.94  Aligned_cols=298  Identities=18%  Similarity=0.222  Sum_probs=197.3

Q ss_pred             CccEEecCCCCCccccC-----CccCCeeEEec-CCccCcc--cCccCCCCCCCCEEeCcCCccccccc--ccccCCCCC
Q 017542           20 SSIKIDCYKCVNLREFP-----RISGNVVELNL-MCTPIEE--VPLSIECLPNLETLEMSFCNSLKRLS--TSICKLKSL   89 (369)
Q Consensus        20 ~L~~L~l~~~~~l~~~~-----~~~~~L~~L~l-~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L   89 (369)
                      .|+.|.++|+...+.-+     ...+++++|++ .+.++++  ....-..|++|++|++..|..++...  .....+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            47888888887544322     22338888888 4555552  22223578999999999988777543  223568999


Q ss_pred             cEEecCCCcCCcc--CchhhhccCccceeecccccccc--ccchhhhcCCCCCeEeecCCCCCCCCCc--ccCCCcchhh
Q 017542           90 RSLDLSYCINLES--FPEILEKMELLEEINLEEASNIK--ELPSSIENLEGLKQLKLTGCTKLGSLPE--SLGNLKSLER  163 (369)
Q Consensus        90 ~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~  163 (369)
                      ++|++++|.....  +......++.++.+...||...+  .+...-..+..+.++++..|..+++..-  .-..+..|+.
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~  298 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV  298 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence            9999999976644  33455677888888777776554  1222233556677888888877665431  2245778899


Q ss_pred             hccCcccCC-CC--CcccccCCCCcEEeecCCCC---CCCCccccCCCCCcEEeccCCCCcc---CCCCCCCCCCCCEEE
Q 017542          164 LHAGLLAIP-QA--PSSIVDLNKLETLSLFECRG---LVLPPLLSGLSSLKKLELGDCEIME---IPPDIGCLSSLESLN  234 (369)
Q Consensus       164 L~l~~~~~~-~~--~~~l~~~~~L~~L~l~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~L~~L~  234 (369)
                      +..+++... ..  ..-..++.+|+.+.+..|..   ..+...-.+++.|+.+++.+|....   +.....+++.|+++.
T Consensus       299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls  378 (483)
T KOG4341|consen  299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS  378 (483)
T ss_pred             hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence            988877542 11  12234678999999999982   2222234568899999999886644   444457899999999


Q ss_pred             ccCCc-CCcc-----chhhccCCcCcEecccCCcccccCCCCCcccceeccccccccccCCCchhhhHHHhHHHHHhhhc
Q 017542          235 LSGNN-IESL-----PTSISQLSRLRWLYLVNCVKLQSLPELPLLLVMLGASDCKRLQFLPELTSCLEELDASILQALSN  308 (369)
Q Consensus       235 l~~~~-l~~~-----~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~l~~l~~~~~~~l~~  308 (369)
                      +++|. +++.     .....+...|..+.+++|+.+++     ..|++|.  .|++|+.          +++.+|+.++.
T Consensus       379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d-----~~Le~l~--~c~~Ler----------i~l~~~q~vtk  441 (483)
T KOG4341|consen  379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD-----ATLEHLS--ICRNLER----------IELIDCQDVTK  441 (483)
T ss_pred             hhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH-----HHHHHHh--hCcccce----------eeeechhhhhh
Confidence            99984 4422     33345677899999999987765     3344333  3555544          56677888888


Q ss_pred             cccccccCCCCCcEEEecCccCcchh
Q 017542          309 RTGERLSKHMSPVQLIFANCLKLNES  334 (369)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~c~~l~~~  334 (369)
                      .++..+..+.|..++.-...+...+.
T Consensus       442 ~~i~~~~~~lp~i~v~a~~a~~t~p~  467 (483)
T KOG4341|consen  442 EAISRFATHLPNIKVHAYFAPVTPPG  467 (483)
T ss_pred             hhhHHHHhhCccceehhhccCCCCcc
Confidence            88888887777766665555444443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=7e-12  Score=109.87  Aligned_cols=200  Identities=25%  Similarity=0.228  Sum_probs=111.8

Q ss_pred             CCCCCCEEeCcCCccccccc--ccccCCCCCcEEecCCCcCCc--cCchhhhccCccceeeccccccccccch-hhhcCC
Q 017542           61 CLPNLETLEMSFCNSLKRLS--TSICKLKSLRSLDLSYCINLE--SFPEILEKMELLEEINLEEASNIKELPS-SIENLE  135 (369)
Q Consensus        61 ~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~  135 (369)
                      ++.+|+.+.+..+.. ...+  .....|++++.||+++|-...  .+...+..+++|+.|+++.|........ .-..++
T Consensus       119 n~kkL~~IsLdn~~V-~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  119 NLKKLREISLDNYRV-EDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hHHhhhheeecCccc-cccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            445566666655432 2222  233456666666666642211  2334455666666666665544321111 112455


Q ss_pred             CCCeEeecCCCCCC-CCCcccCCCcchhhhccCccc-CCCCCcccccCCCCcEEeecCCCCCCCC--ccccCCCCCcEEe
Q 017542          136 GLKQLKLTGCTKLG-SLPESLGNLKSLERLHAGLLA-IPQAPSSIVDLNKLETLSLFECRGLVLP--PLLSGLSSLKKLE  211 (369)
Q Consensus       136 ~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~  211 (369)
                      .|+.|.+++|.... ++...+..+|+|+.|++.+|. +........-+..|+.|++++|.....+  ...+.++.|+.|+
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            67777777766542 222334556777777777774 2211122233556777777777755554  3456677777777


Q ss_pred             ccCCCCcc--CCCC-----CCCCCCCCEEEccCCcCCccc--hhhccCCcCcEecccCC
Q 017542          212 LGDCEIME--IPPD-----IGCLSSLESLNLSGNNIESLP--TSISQLSRLRWLYLVNC  261 (369)
Q Consensus       212 l~~~~~~~--~~~~-----~~~~~~L~~L~l~~~~l~~~~--~~~~~~~~L~~L~l~~~  261 (369)
                      ++.|.+.+  .++.     ...+++|++|++..|++.+++  ..+...++|+.|.+..+
T Consensus       278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n  336 (505)
T KOG3207|consen  278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN  336 (505)
T ss_pred             ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccc
Confidence            77777766  3332     345678888888888776555  23455667777776655

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.16  E-value=3.4e-12  Score=115.36  Aligned_cols=211  Identities=27%  Similarity=0.386  Sum_probs=163.6

Q ss_pred             EecCCccCcccCccCC--CCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccc
Q 017542           45 LNLMCTPIEEVPLSIE--CLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEAS  122 (369)
Q Consensus        45 L~l~~~~~~~l~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  122 (369)
                      |.|++-.++.+|..-.  .+..-...|++.| ....+|..++.+..|+.+.++.| ....+|..+.++..|++++++.|+
T Consensus        55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrN-R~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~Nq  132 (722)
T KOG0532|consen   55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRN-RFSELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQ  132 (722)
T ss_pred             cccccchhhcCCCccccccccchhhhhcccc-ccccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccch
Confidence            4455555555554322  2333456678875 44567777788888888888884 566788888999999999999665


Q ss_pred             cccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCcccc
Q 017542          123 NIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLS  202 (369)
Q Consensus       123 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  202 (369)
                       +..+|..++.++ |+.|.+++ +.++.+|..++...+|..|+.+.|.+..+|..+..+.+|+.|.+..|....+|+.+.
T Consensus       133 -lS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~  209 (722)
T KOG0532|consen  133 -LSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC  209 (722)
T ss_pred             -hhcCChhhhcCc-ceeEEEec-CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh
Confidence             455666677665 88888877 667888888888889999999999999999999999999999999999888888777


Q ss_pred             CCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccchhhc---cCCcCcEecccCC
Q 017542          203 GLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSIS---QLSRLRWLYLVNC  261 (369)
Q Consensus       203 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~---~~~~L~~L~l~~~  261 (369)
                      .+ .|..|+++.|++..+|..+..+..|++|-|.+|.+.+-|..+.   ..-=.++|++.-|
T Consensus       210 ~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  210 SL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             CC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence            55 4889999999999999999999999999999999887776552   2233567777776

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=1.3e-11  Score=108.31  Aligned_cols=201  Identities=17%  Similarity=0.158  Sum_probs=130.3

Q ss_pred             CeeEEecCCccCcccCc--cCCCCCCCCEEeCcCCcccc--cccccccCCCCCcEEecCCCcCCccCc-hhhhccCccce
Q 017542           41 NVVELNLMCTPIEEVPL--SIECLPNLETLEMSFCNSLK--RLSTSICKLKSLRSLDLSYCINLESFP-EILEKMELLEE  115 (369)
Q Consensus        41 ~L~~L~l~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~  115 (369)
                      +|+...++++.+...+.  ....|++++.||+++|-...  .+......+++|+.|+++.|....-.. ..-..+++|+.
T Consensus       122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~  201 (505)
T KOG3207|consen  122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ  201 (505)
T ss_pred             hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence            67777777777765552  45677888888888764332  333445667888888888764332211 12235677888


Q ss_pred             eecccccccc-ccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCC--cccccCCCCcEEeecCC
Q 017542          116 INLEEASNIK-ELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAP--SSIVDLNKLETLSLFEC  192 (369)
Q Consensus       116 L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~l~~~~~L~~L~l~~~  192 (369)
                      |.+++|.... ++...+..+|+|+.|++.+|............+..|++|++++|.+...+  ...+.++.|+.|+++.+
T Consensus       202 L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t  281 (505)
T KOG3207|consen  202 LVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST  281 (505)
T ss_pred             EEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcccc
Confidence            8888776543 34444567788888888876533322223345667888888888776554  34566778888888877


Q ss_pred             CCCCC--Ccc-----ccCCCCCcEEeccCCCCccCC--CCCCCCCCCCEEEccCCcCC
Q 017542          193 RGLVL--PPL-----LSGLSSLKKLELGDCEIMEIP--PDIGCLSSLESLNLSGNNIE  241 (369)
Q Consensus       193 ~~~~~--~~~-----~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~l~  241 (369)
                      ...++  |+.     ...+++|+.|++..|++.+++  ..+..+++|+.|.+..|.++
T Consensus       282 gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  282 GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             CcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            74433  222     356788999999999887643  33566778888887777665

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.15  E-value=7.8e-11  Score=108.77  Aligned_cols=193  Identities=34%  Similarity=0.480  Sum_probs=128.0

Q ss_pred             EEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccC-ccceeeccccccccccchhhhcCCCCCeEeecCC
Q 017542           67 TLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKME-LLEEINLEEASNIKELPSSIENLEGLKQLKLTGC  145 (369)
Q Consensus        67 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  145 (369)
                      .++...+........ +..+..++.|++.++ ....++.....++ +|+.|++++|. +..++..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~~~-~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNISE-LLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCchh-hhcccceeEEecCCc-ccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCc
Confidence            455555443233222 344567777777774 3445555555664 77778777544 4444455667777888887774


Q ss_pred             CCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCC
Q 017542          146 TKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIG  225 (369)
Q Consensus       146 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  225 (369)
                      + +..++...+..+.|+.+++++|.+..+|........|+++.+++|.....+..+.++.++..+.+.++++..++..+.
T Consensus       174 ~-l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~  252 (394)
T COG4886         174 D-LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIG  252 (394)
T ss_pred             h-hhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhc
Confidence            3 455554444677778888888887777766556666778888777655555556667777777777777776666677


Q ss_pred             CCCCCCEEEccCCcCCccchhhccCCcCcEecccCCccc
Q 017542          226 CLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKL  264 (369)
Q Consensus       226 ~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l  264 (369)
                      .++++++|++++|.+++++. ++...+++.|+++++...
T Consensus       253 ~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         253 NLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             cccccceecccccccccccc-ccccCccCEEeccCcccc
Confidence            77778888888888777775 777778888888777433

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.13  E-value=2.5e-11  Score=96.88  Aligned_cols=129  Identities=28%  Similarity=0.291  Sum_probs=44.3

Q ss_pred             cCCCcchhhhccCcccCCCCCcccc-cCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCC-CCCCCCCE
Q 017542          155 LGNLKSLERLHAGLLAIPQAPSSIV-DLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDI-GCLSSLES  232 (369)
Q Consensus       155 ~~~l~~L~~L~l~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~  232 (369)
                      +.+..++++|++.++.+..+. .+. .+.+|+.|++++|....+.. +..+++|+.|++++|.+.++...+ ..+|+|++
T Consensus        15 ~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~-l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEG-LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S--TT-----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred             ccccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccC-ccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence            344556777777777777653 344 46777888888887766653 566778888888888887764433 34678888


Q ss_pred             EEccCCcCCccc--hhhccCCcCcEecccCCcccccCCCCCcccceeccccccccccCCC
Q 017542          233 LNLSGNNIESLP--TSISQLSRLRWLYLVNCVKLQSLPELPLLLVMLGASDCKRLQFLPE  290 (369)
Q Consensus       233 L~l~~~~l~~~~--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~c~~L~~l~~  290 (369)
                      |++++|++.++.  ..++.+|+|++|++.+|+--..     +..+..-+..+|+|+.++.
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-----~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-----KNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-----TTHHHHHHHH-TT-SEETT
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-----hhHHHHHHHHcChhheeCC
Confidence            888888777443  3556788888888888853221     2344444555666665553

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.12  E-value=3.4e-12  Score=108.80  Aligned_cols=221  Identities=21%  Similarity=0.220  Sum_probs=142.3

Q ss_pred             CeeEEecCCccCc-----ccCccCCCCCCCCEEeCcCCcc---ccccc-------ccccCCCCCcEEecCCCcCCccC--
Q 017542           41 NVVELNLMCTPIE-----EVPLSIECLPNLETLEMSFCNS---LKRLS-------TSICKLKSLRSLDLSYCINLESF--  103 (369)
Q Consensus        41 ~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~---~~~~~-------~~~~~~~~L~~L~l~~~~~~~~~--  103 (369)
                      .++++++++|.+.     .+-..+.+.+.|+..++++-..   ...+|       +.+-.+++|++|+||.|-.....  
T Consensus        31 s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~  110 (382)
T KOG1909|consen   31 SLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIR  110 (382)
T ss_pred             ceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchH
Confidence            6777777777664     2333455566777777765211   11222       22344667888888876444332  


Q ss_pred             --chhhhccCccceeeccccccccccch-------------hhhcCCCCCeEeecCCCCCCCCC-----cccCCCcchhh
Q 017542          104 --PEILEKMELLEEINLEEASNIKELPS-------------SIENLEGLKQLKLTGCTKLGSLP-----ESLGNLKSLER  163 (369)
Q Consensus       104 --~~~~~~l~~L~~L~l~~~~~~~~~~~-------------~~~~l~~L~~L~l~~~~~~~~~~-----~~~~~l~~L~~  163 (369)
                        .+.+.++..|++|.+.+|........             ....-+.|+.+...+| .+.+.+     ..+...+.|+.
T Consensus       111 ~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~~lee  189 (382)
T KOG1909|consen  111 GLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAEAFQSHPTLEE  189 (382)
T ss_pred             HHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHHHHHhccccce
Confidence              24456778888888875543322111             1234567888888774 343322     34566788888


Q ss_pred             hccCcccCC--CC---CcccccCCCCcEEeecCCCCC-----CCCccccCCCCCcEEeccCCCCcc-----CCCC-CCCC
Q 017542          164 LHAGLLAIP--QA---PSSIVDLNKLETLSLFECRGL-----VLPPLLSGLSSLKKLELGDCEIME-----IPPD-IGCL  227 (369)
Q Consensus       164 L~l~~~~~~--~~---~~~l~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~-~~~~  227 (369)
                      +.+..|.+.  ++   ...+..+++|+.|++..|..+     .+...++.+++|+.|+++.|.+..     +... -...
T Consensus       190 vr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~  269 (382)
T KOG1909|consen  190 VRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESA  269 (382)
T ss_pred             EEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccC
Confidence            888888765  22   245678899999999988743     234467778899999999998866     1111 2347


Q ss_pred             CCCCEEEccCCcCC-----ccchhhccCCcCcEecccCCc
Q 017542          228 SSLESLNLSGNNIE-----SLPTSISQLSRLRWLYLVNCV  262 (369)
Q Consensus       228 ~~L~~L~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~  262 (369)
                      |+|+++.+.+|.++     .+...+...|.|+.|++++|.
T Consensus       270 p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  270 PSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             CCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence            89999999999887     223345567899999999984

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.08  E-value=2.8e-10  Score=105.03  Aligned_cols=195  Identities=30%  Similarity=0.446  Sum_probs=142.9

Q ss_pred             EecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCC-CCcEEecCCCcCCccCchhhhccCccceeecccccc
Q 017542           45 LNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLK-SLRSLDLSYCINLESFPEILEKMELLEEINLEEASN  123 (369)
Q Consensus        45 L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  123 (369)
                      +....+.+..-...+...+.++.|++.++ ....++....... +|+.|+++++. ...++..++.+++|+.|++++|+ 
T Consensus        98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~-  174 (394)
T COG4886          98 LDLNLNRLRSNISELLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND-  174 (394)
T ss_pred             eeccccccccCchhhhcccceeEEecCCc-ccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch-
Confidence            55555555322222444567888888874 4455555455553 88888888854 44555667888889999888655 


Q ss_pred             ccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCccccC
Q 017542          124 IKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSG  203 (369)
Q Consensus       124 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  203 (369)
                      +..++......++|+.|++++ +.+..+|........|+++.+++|.....+..+....++..+.+.+++...++..++.
T Consensus       175 l~~l~~~~~~~~~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~  253 (394)
T COG4886         175 LSDLPKLLSNLSNLNNLDLSG-NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGN  253 (394)
T ss_pred             hhhhhhhhhhhhhhhheeccC-CccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhcc
Confidence            445555555778889999988 4566666655566779999999987666667778888888888888887776777888


Q ss_pred             CCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccc
Q 017542          204 LSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLP  244 (369)
Q Consensus       204 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~  244 (369)
                      ++.++.|++++|.+..++. ++...++++|+++++.+..++
T Consensus       254 l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~  293 (394)
T COG4886         254 LSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNAL  293 (394)
T ss_pred             ccccceecccccccccccc-ccccCccCEEeccCccccccc
Confidence            8889999999999998776 788889999999999877554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.06  E-value=4.4e-11  Score=100.24  Aligned_cols=123  Identities=25%  Similarity=0.193  Sum_probs=75.3

Q ss_pred             CcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccC
Q 017542          158 LKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSG  237 (369)
Q Consensus       158 l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~  237 (369)
                      .+.|+++++++|.++.+.+++.-.+.++.|++++|....+.. +..+++|+.|++++|.+..+..|-..+-+.++|.+++
T Consensus       283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~  361 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ  361 (490)
T ss_pred             HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence            456667777777777666666666777777777776555444 5566677777777776666544444455666777777


Q ss_pred             CcCCccchhhccCCcCcEecccCCcccccCCC-----CCcccceecccccc
Q 017542          238 NNIESLPTSISQLSRLRWLYLVNCVKLQSLPE-----LPLLLVMLGASDCK  283 (369)
Q Consensus       238 ~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-----~~~~L~~L~l~~c~  283 (369)
                      |.+.++. ++..+-+|..||+++| ++..+.+     ..|.|+.+.+.+.|
T Consensus       362 N~iE~LS-GL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  362 NKIETLS-GLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             hhHhhhh-hhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCC
Confidence            7666554 4556666777777766 3332221     22445555555544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.04  E-value=1.3e-10  Score=92.73  Aligned_cols=127  Identities=27%  Similarity=0.345  Sum_probs=52.1

Q ss_pred             hcCCCCCeEeecCCCCCCCCCcccC-CCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCccc-cCCCCCcE
Q 017542          132 ENLEGLKQLKLTGCTKLGSLPESLG-NLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLL-SGLSSLKK  209 (369)
Q Consensus       132 ~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~  209 (369)
                      .+..++++|++.++. +..+. .++ .+.+|+.|++++|.+..+ +.+..+++|+.|++++|....+.+.+ ..+++|+.
T Consensus        16 ~n~~~~~~L~L~~n~-I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQ-ISTIE-NLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred             ccccccccccccccc-ccccc-chhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence            344567777777744 33332 344 467788888888888876 35777888999999999887776544 35789999


Q ss_pred             EeccCCCCccCCC--CCCCCCCCCEEEccCCcCCccc----hhhccCCcCcEecccCC
Q 017542          210 LELGDCEIMEIPP--DIGCLSSLESLNLSGNNIESLP----TSISQLSRLRWLYLVNC  261 (369)
Q Consensus       210 L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~----~~~~~~~~L~~L~l~~~  261 (369)
                      |.+++|++.++..  .+..+++|++|++.+|.++.-+    ..+..+|+|+.||-...
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence            9999999887433  3667899999999999887443    34578899999987544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.03  E-value=1.9e-11  Score=102.44  Aligned_cols=216  Identities=23%  Similarity=0.249  Sum_probs=146.4

Q ss_pred             CeeEEecCCcc--Cc-------ccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccC
Q 017542           41 NVVELNLMCTP--IE-------EVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKME  111 (369)
Q Consensus        41 ~L~~L~l~~~~--~~-------~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~  111 (369)
                      +|+.|-++...  +.       .+|..+..+++|+.+.++.|...... .....-+.|+.+...+. .....+. +--.+
T Consensus       183 ~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~-~~~~~kptl~t~~v~~s-~~~~~~~-l~pe~  259 (490)
T KOG1259|consen  183 QLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIV-DIELLKPTLQTICVHNT-TIQDVPS-LLPET  259 (490)
T ss_pred             heeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhhee-ceeecCchhheeeeecc-ccccccc-ccchh
Confidence            67777664332  11       23334556678888888887543322 21222367777776653 2222221 11112


Q ss_pred             ccceeecccccc-ccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeec
Q 017542          112 LLEEINLEEASN-IKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLF  190 (369)
Q Consensus       112 ~L~~L~l~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~  190 (369)
                      .+.......-.. .+.....+...+.|+++++++ +.++.+.+++.-.++++.|++++|.+..+. .+..+++|+.|+++
T Consensus       260 ~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~-N~I~~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS  337 (490)
T KOG1259|consen  260 ILADPSGSEPSTSNGSALVSADTWQELTELDLSG-NLITQIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLS  337 (490)
T ss_pred             hhcCccCCCCCccCCceEEecchHhhhhhccccc-cchhhhhhhhhhccceeEEeccccceeeeh-hhhhcccceEeecc
Confidence            222221111000 011112233456799999999 567777788888999999999999998774 48889999999999


Q ss_pred             CCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccc--hhhccCCcCcEecccCCc
Q 017542          191 ECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLP--TSISQLSRLRWLYLVNCV  262 (369)
Q Consensus       191 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~~L~~L~l~~~~  262 (369)
                      +|....+..+-.++-+++.|.+++|.+.++. .+..+-+|..||+++|+|..+.  ..++++|.|+++.+.+|+
T Consensus       338 ~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  338 GNLLAECVGWHLKLGNIKTLKLAQNKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             cchhHhhhhhHhhhcCEeeeehhhhhHhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence            9998888877778889999999999988753 3677789999999999998554  568999999999999996

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.01  E-value=1e-11  Score=112.33  Aligned_cols=191  Identities=29%  Similarity=0.380  Sum_probs=160.4

Q ss_pred             CCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhc
Q 017542           86 LKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLH  165 (369)
Q Consensus        86 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  165 (369)
                      +..-...+++.| ....+|..+..+..|+.+.++.| .+..+|..++++..|..++++.| .+..+|..+..++ |+.|-
T Consensus        74 ltdt~~aDlsrN-R~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli  149 (722)
T KOG0532|consen   74 LTDTVFADLSRN-RFSELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLI  149 (722)
T ss_pred             ccchhhhhcccc-ccccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEE
Confidence            334455677874 56678988999999999988854 46678888999999999999995 4667777777776 89999


Q ss_pred             cCcccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccch
Q 017542          166 AGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPT  245 (369)
Q Consensus       166 l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~  245 (369)
                      +++|.++.+|+.++....|..|+.+.|...++|..++++.+|+.|.+..|++..+|..+..+ .|..||+++|++..+|.
T Consensus       150 ~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv  228 (722)
T KOG0532|consen  150 VSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPV  228 (722)
T ss_pred             EecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecch
Confidence            99999999999999999999999999999999999999999999999999999999888855 68999999999999999


Q ss_pred             hhccCCcCcEecccCCcccccCCCC------Ccccceeccccc
Q 017542          246 SISQLSRLRWLYLVNCVKLQSLPEL------PLLLVMLGASDC  282 (369)
Q Consensus       246 ~~~~~~~L~~L~l~~~~~l~~~~~~------~~~L~~L~l~~c  282 (369)
                      .+..+..|++|-|.+|+ +++-|..      -.=.++|++..|
T Consensus       229 ~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  229 DFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             hhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence            99999999999999885 5544321      122577777777

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.94  E-value=4.7e-10  Score=95.95  Aligned_cols=103  Identities=22%  Similarity=0.222  Sum_probs=64.6

Q ss_pred             ccCCCCcEEeecCCCCCCCC-----ccccCCCCCcEEeccCCCCcc-----CCCCCCCCCCCCEEEccCCcCC-----cc
Q 017542          179 VDLNKLETLSLFECRGLVLP-----PLLSGLSSLKKLELGDCEIME-----IPPDIGCLSSLESLNLSGNNIE-----SL  243 (369)
Q Consensus       179 ~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~l~-----~~  243 (369)
                      .+.++|+.+..++|+...-+     ..+...+.|+.+.+..|.+..     +...+..+++|+.||+.+|.++     .+
T Consensus       154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L  233 (382)
T KOG1909|consen  154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL  233 (382)
T ss_pred             CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence            34567777777777743322     345566777788777777655     2233567778888888887766     33


Q ss_pred             chhhccCCcCcEecccCCccccc---------CCCCCcccceeccccc
Q 017542          244 PTSISQLSRLRWLYLVNCVKLQS---------LPELPLLLVMLGASDC  282 (369)
Q Consensus       244 ~~~~~~~~~L~~L~l~~~~~l~~---------~~~~~~~L~~L~l~~c  282 (369)
                      ...++.+++|++|++++| .+.+         +....++|+.+.+.+|
T Consensus       234 akaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gN  280 (382)
T KOG1909|consen  234 AKALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGN  280 (382)
T ss_pred             HHHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcc
Confidence            455566777888888777 3332         1223456666666555

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=9.2e-11  Score=98.18  Aligned_cols=173  Identities=17%  Similarity=0.206  Sum_probs=96.4

Q ss_pred             ccceeecccccccc-ccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCccc-CCCC--CcccccCCCCcEE
Q 017542          112 LLEEINLEEASNIK-ELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLA-IPQA--PSSIVDLNKLETL  187 (369)
Q Consensus       112 ~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~--~~~l~~~~~L~~L  187 (369)
                      .|+++|++...... .+-..+..|.+|+.|.+.+...-..+...+.+-.+|+.++++.+. ++..  .-.+.+|+.|.+|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            35556665322211 223334455556666655544333333344455556666655543 2211  1234556667777


Q ss_pred             eecCCCCCCC--Cccc-cCCCCCcEEeccCCCCc----cCCCCCCCCCCCCEEEccCC-cCC-ccchhhccCCcCcEecc
Q 017542          188 SLFECRGLVL--PPLL-SGLSSLKKLELGDCEIM----EIPPDIGCLSSLESLNLSGN-NIE-SLPTSISQLSRLRWLYL  258 (369)
Q Consensus       188 ~l~~~~~~~~--~~~~-~~~~~L~~L~l~~~~~~----~~~~~~~~~~~L~~L~l~~~-~l~-~~~~~~~~~~~L~~L~l  258 (369)
                      ++++|.+..-  .... .--++|+.|+++|+.-.    .+......+|+|.+|||++| .++ +....+.+++.|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            7777663211  1111 11256777777776422    12223467889999999987 555 44566778899999999


Q ss_pred             cCCcccccC--C--CCCcccceeccccccc
Q 017542          259 VNCVKLQSL--P--ELPLLLVMLGASDCKR  284 (369)
Q Consensus       259 ~~~~~l~~~--~--~~~~~L~~L~l~~c~~  284 (369)
                      +.|..+..-  -  ...+++.+|++.+|-.
T Consensus       346 sRCY~i~p~~~~~l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  346 SRCYDIIPETLLELNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             hhhcCCChHHeeeeccCcceEEEEeccccC
Confidence            999755321  1  1337788888888753

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=5.6e-11  Score=99.45  Aligned_cols=175  Identities=18%  Similarity=0.153  Sum_probs=91.2

Q ss_pred             CCCEEeCcCCcccc-cccccccCCCCCcEEecCCCcCCccCchhhhccCccceeecccccccccc--chhhhcCCCCCeE
Q 017542           64 NLETLEMSFCNSLK-RLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKEL--PSSIENLEGLKQL  140 (369)
Q Consensus        64 ~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L  140 (369)
                      +|+++|++...... .+...++.|.+|+.|.+.+....+.+...+..-.+|+.++++.|..++..  .-.+.+|+.|.+|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            35555555433221 22233444555555555554444444444555555555555555544422  1234455555555


Q ss_pred             eecCCCCCCCCCc-ccCC-CcchhhhccCcccCC----CCCcccccCCCCcEEeecCCCCC--CCCccccCCCCCcEEec
Q 017542          141 KLTGCTKLGSLPE-SLGN-LKSLERLHAGLLAIP----QAPSSIVDLNKLETLSLFECRGL--VLPPLLSGLSSLKKLEL  212 (369)
Q Consensus       141 ~l~~~~~~~~~~~-~~~~-l~~L~~L~l~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l  212 (369)
                      ++++|......-. .+.+ -++|..|+++|+.-.    .+.--...+++|.+||+++|...  .....+.+++.|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            5555543322110 0111 134555665554311    12122345778888888877621  22234667788888888


Q ss_pred             cCCCCcc--CCCCCCCCCCCCEEEccCC
Q 017542          213 GDCEIME--IPPDIGCLSSLESLNLSGN  238 (369)
Q Consensus       213 ~~~~~~~--~~~~~~~~~~L~~L~l~~~  238 (369)
                      +.|....  ..-.+...|+|.+|++.++
T Consensus       346 sRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  346 SRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhcCCChHHeeeeccCcceEEEEeccc
Confidence            8886543  2223667788888888886

>PLN03150 hypothetical protein; Provisional

Probab=98.67  E-value=7.7e-08  Score=93.39  Aligned_cols=106  Identities=25%  Similarity=0.288  Sum_probs=61.9

Q ss_pred             CCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecC
Q 017542           65 LETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTG  144 (369)
Q Consensus        65 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  144 (369)
                      ++.|+|++|...+.+|..+..+++|+.|++++|.....+|..++.+++|+.|++++|.....+|..+..+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            55566666555555565566666666666666655555666666666666666666555555666666666666666666


Q ss_pred             CCCCCCCCcccCCC-cchhhhccCccc
Q 017542          145 CTKLGSLPESLGNL-KSLERLHAGLLA  170 (369)
Q Consensus       145 ~~~~~~~~~~~~~l-~~L~~L~l~~~~  170 (369)
                      |...+.+|..+... .++..+++.+|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCc
Confidence            65555555544332 233444555443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.62  E-value=7.8e-09  Score=95.78  Aligned_cols=171  Identities=26%  Similarity=0.273  Sum_probs=76.0

Q ss_pred             CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccc
Q 017542           41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE  120 (369)
Q Consensus        41 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  120 (369)
                      +|+.+++..|.+..+...+..+++|++|++++|... .+.. +..+..|+.|++++|.... + ..+..++.|+.+++++
T Consensus        96 ~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~-~i~~-l~~l~~L~~L~l~~N~i~~-~-~~~~~l~~L~~l~l~~  171 (414)
T KOG0531|consen   96 SLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKIT-KLEG-LSTLTLLKELNLSGNLISD-I-SGLESLKSLKLLDLSY  171 (414)
T ss_pred             ceeeeeccccchhhcccchhhhhcchheeccccccc-cccc-hhhccchhhheeccCcchh-c-cCCccchhhhcccCCc
Confidence            555555555555555443455555666666554322 2222 3444455555555543322 1 1233355555555555


Q ss_pred             cccccccc-hhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCC--CcEEeecCCCCCCC
Q 017542          121 ASNIKELP-SSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNK--LETLSLFECRGLVL  197 (369)
Q Consensus       121 ~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~--L~~L~l~~~~~~~~  197 (369)
                      |.....-+ . ...+.+++.+.+.++.... + ..+..+..+..+++..+.+..+. .+.....  |+.+++.++.....
T Consensus       172 n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~-i-~~~~~~~~l~~~~l~~n~i~~~~-~l~~~~~~~L~~l~l~~n~i~~~  247 (414)
T KOG0531|consen  172 NRIVDIENDE-LSELISLEELDLGGNSIRE-I-EGLDLLKKLVLLSLLDNKISKLE-GLNELVMLHLRELYLSGNRISRS  247 (414)
T ss_pred             chhhhhhhhh-hhhccchHHHhccCCchhc-c-cchHHHHHHHHhhcccccceecc-CcccchhHHHHHHhcccCccccc
Confidence            44333221 1 2344555555555432211 1 12233333334444444443321 1111222  55555555554444


Q ss_pred             CccccCCCCCcEEeccCCCCcc
Q 017542          198 PPLLSGLSSLKKLELGDCEIME  219 (369)
Q Consensus       198 ~~~~~~~~~L~~L~l~~~~~~~  219 (369)
                      +..+..+..+..+++..+.+..
T Consensus       248 ~~~~~~~~~l~~l~~~~n~~~~  269 (414)
T KOG0531|consen  248 PEGLENLKNLPVLDLSSNRISN  269 (414)
T ss_pred             cccccccccccccchhhccccc
Confidence            3334445555555555555444

>PLN03150 hypothetical protein; Provisional

Probab=98.51  E-value=2.3e-07  Score=90.10  Aligned_cols=106  Identities=25%  Similarity=0.320  Sum_probs=93.1

Q ss_pred             CCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccC
Q 017542           88 SLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAG  167 (369)
Q Consensus        88 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  167 (369)
                      .++.|+|++|.....+|..+..+++|+.|++++|...+.+|..+..+++|+.|++++|...+.+|..++.+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999988888899999999999999999988877899899999999999999998888899999999999999999


Q ss_pred             cccCC-CCCccccc-CCCCcEEeecCCC
Q 017542          168 LLAIP-QAPSSIVD-LNKLETLSLFECR  193 (369)
Q Consensus       168 ~~~~~-~~~~~l~~-~~~L~~L~l~~~~  193 (369)
                      +|.+. .+|..+.. ..++..+++.+|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCc
Confidence            99987 66766654 3466788888886

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.47  E-value=2.5e-09  Score=99.78  Aligned_cols=124  Identities=26%  Similarity=0.209  Sum_probs=93.7

Q ss_pred             CCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCC
Q 017542          136 GLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDC  215 (369)
Q Consensus       136 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~  215 (369)
                      .|...+.++ +.+..+...+.-++.++.|++++|.+.++. .+..+++|++||++.|....+|..-..--+|..|.+++|
T Consensus       165 ~L~~a~fsy-N~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN  242 (1096)
T KOG1859|consen  165 KLATASFSY-NRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNN  242 (1096)
T ss_pred             hHhhhhcch-hhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeeccc
Confidence            455555555 445556666777888999999999988774 778889999999999998877763222234999999999


Q ss_pred             CCccCCCCCCCCCCCCEEEccCCcCCccc--hhhccCCcCcEecccCCc
Q 017542          216 EIMEIPPDIGCLSSLESLNLSGNNIESLP--TSISQLSRLRWLYLVNCV  262 (369)
Q Consensus       216 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~~L~~L~l~~~~  262 (369)
                      .++++. .+.++++|+.||++.|-+....  ..+..+..|+.|.+.||+
T Consensus       243 ~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  243 ALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             HHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence            888864 3677889999999999777443  345677788888888886

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.44  E-value=1.7e-07  Score=61.40  Aligned_cols=57  Identities=39%  Similarity=0.477  Sum_probs=28.7

Q ss_pred             CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCC
Q 017542           41 NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYC   97 (369)
Q Consensus        41 ~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~   97 (369)
                      +|++|++++|.++.++. .+..+++|++|++++|.....-+..|.++++|++|++++|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            34555555555555543 3445555555555554443333334455555555555554

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.43  E-value=1.8e-06  Score=77.60  Aligned_cols=136  Identities=30%  Similarity=0.425  Sum_probs=78.6

Q ss_pred             cCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhh
Q 017542           84 CKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLER  163 (369)
Q Consensus        84 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  163 (369)
                      ..+.+++.|++++| .+..+|.   --.+|++|.+++|..+..+|..+  .++|++|.+++|..+..+|.      +|+.
T Consensus        49 ~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~  116 (426)
T PRK15386         49 EEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRS  116 (426)
T ss_pred             HHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccce
Confidence            34678888888887 4555552   23458888888777776666544  25788888888766655553      3455


Q ss_pred             hccCcccCCCCCcccccCCCCcEEeecCCC-C--CCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCC
Q 017542          164 LHAGLLAIPQAPSSIVDLNKLETLSLFECR-G--LVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGN  238 (369)
Q Consensus       164 L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~-~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~  238 (369)
                      |++..+....++.   -+++|+.|.+.++. .  ..++..  -.++|+.|.+++|....+|..+  ..+|+.|.++.+
T Consensus       117 L~L~~n~~~~L~~---LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~~L--P~SLk~L~ls~n  187 (426)
T PRK15386        117 LEIKGSATDSIKN---VPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPEKL--PESLQSITLHIE  187 (426)
T ss_pred             EEeCCCCCccccc---CcchHhheeccccccccccccccc--cCCcccEEEecCCCcccCcccc--cccCcEEEeccc
Confidence            5555444322211   12355666664332 1  111111  1257788888877765544332  257778877765

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.42  E-value=4.3e-08  Score=90.91  Aligned_cols=212  Identities=30%  Similarity=0.340  Sum_probs=131.3

Q ss_pred             CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccc
Q 017542           41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE  120 (369)
Q Consensus        41 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  120 (369)
                      .++.++++.+.+..+-..+..+++|+.|++.+|... .+...+..+++|++|++++|.+...  ..+..++.|+.|++.+
T Consensus        73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~  149 (414)
T KOG0531|consen   73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSG  149 (414)
T ss_pred             hHHhhccchhhhhhhhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhhheecc
Confidence            666667777777765455777888888888885443 3333356688888888888655433  2345666788888887


Q ss_pred             cccccccchhhhcCCCCCeEeecCCCCCCCCCcc-cCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCc
Q 017542          121 ASNIKELPSSIENLEGLKQLKLTGCTKLGSLPES-LGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPP  199 (369)
Q Consensus       121 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  199 (369)
                      |.....  ..+..++.|+.+++++|..... ... ...+.+++.+.+.+|.+..+ ..+.....+..+++..+....+..
T Consensus       150 N~i~~~--~~~~~l~~L~~l~l~~n~i~~i-e~~~~~~~~~l~~l~l~~n~i~~i-~~~~~~~~l~~~~l~~n~i~~~~~  225 (414)
T KOG0531|consen  150 NLISDI--SGLESLKSLKLLDLSYNRIVDI-ENDELSELISLEELDLGGNSIREI-EGLDLLKKLVLLSLLDNKISKLEG  225 (414)
T ss_pred             Ccchhc--cCCccchhhhcccCCcchhhhh-hhhhhhhccchHHHhccCCchhcc-cchHHHHHHHHhhcccccceeccC
Confidence            765432  1233477888888888554332 221 36677888888888877654 233334445555666665443332


Q ss_pred             cccCCC--CCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccchhhccCCcCcEecccCC
Q 017542          200 LLSGLS--SLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNC  261 (369)
Q Consensus       200 ~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~  261 (369)
                       +....  +|+.+.++++++...+..+..+..+..+++.++.+..+. .+...+.+..+....+
T Consensus       226 -l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~-~~~~~~~~~~~~~~~~  287 (414)
T KOG0531|consen  226 -LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLE-GLERLPKLSELWLNDN  287 (414)
T ss_pred             -cccchhHHHHHHhcccCccccccccccccccccccchhhccccccc-cccccchHHHhccCcc
Confidence             11222  278888888888776555667778888888888766443 1223334444444443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.38  E-value=3.1e-07  Score=77.45  Aligned_cols=226  Identities=21%  Similarity=0.175  Sum_probs=141.2

Q ss_pred             CCCCCEEeCcCCcccc--cccccccCCCCCcEEecCCCcCCc--cCchhhhccCccceeeccccccccccchhhhcCCCC
Q 017542           62 LPNLETLEMSFCNSLK--RLSTSICKLKSLRSLDLSYCINLE--SFPEILEKMELLEEINLEEASNIKELPSSIENLEGL  137 (369)
Q Consensus        62 ~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L  137 (369)
                      ...++.+.+.+|..-+  ++...-..+..++.+++.+|.+..  ++...+.++|.|+.|+++.|+....+...-....+|
T Consensus        44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl  123 (418)
T KOG2982|consen   44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL  123 (418)
T ss_pred             ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence            3345556666654322  222222457889999999976543  244567889999999999665444332111245689


Q ss_pred             CeEeecCCCCCC-CCCcccCCCcchhhhccCcccCCCC---CcccccC-CCCcEEeecCCCCCC---CCccccCCCCCcE
Q 017542          138 KQLKLTGCTKLG-SLPESLGNLKSLERLHAGLLAIPQA---PSSIVDL-NKLETLSLFECRGLV---LPPLLSGLSSLKK  209 (369)
Q Consensus       138 ~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~---~~~l~~~-~~L~~L~l~~~~~~~---~~~~~~~~~~L~~  209 (369)
                      +.|.+.+...-. .....+..++.+++++++.|....+   ....... +.++++....|....   .-.....+|++..
T Consensus       124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~s  203 (418)
T KOG2982|consen  124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNS  203 (418)
T ss_pred             EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchh
Confidence            999988754322 2233467788899998888854421   1112222 356666666665211   1112234688899


Q ss_pred             EeccCCCCccC--CCCCCCCCCCCEEEccCCcCCccc--hhhccCCcCcEecccCCcccccCCCCCcccceecccccccc
Q 017542          210 LELGDCEIMEI--PPDIGCLSSLESLNLSGNNIESLP--TSISQLSRLRWLYLVNCVKLQSLPELPLLLVMLGASDCKRL  285 (369)
Q Consensus       210 L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~c~~L  285 (369)
                      +.+..|++.+.  ......+|.+.-|+++.+++.++.  +.+.+++.|+.|.+++++.+..+..  ..=+.|-|...+++
T Consensus       204 v~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~--~err~llIaRL~~v  281 (418)
T KOG2982|consen  204 VFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG--GERRFLLIARLTKV  281 (418)
T ss_pred             eeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccC--CcceEEEEeeccce
Confidence            99999988773  334566788889999999988554  5688999999999999987776543  22234444555555


Q ss_pred             ccCC
Q 017542          286 QFLP  289 (369)
Q Consensus       286 ~~l~  289 (369)
                      +.+-
T Consensus       282 ~vLN  285 (418)
T KOG2982|consen  282 QVLN  285 (418)
T ss_pred             EEec
Confidence            5443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.37  E-value=4.1e-07  Score=59.58  Aligned_cols=58  Identities=26%  Similarity=0.293  Sum_probs=29.1

Q ss_pred             CCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeecccc
Q 017542           64 NLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEA  121 (369)
Q Consensus        64 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  121 (369)
                      +|++|++++|.....-+..|.++++|++|++++|......+..+..+++|++|++++|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            4555555554332222234455555555555555444334445555555555555544

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.24  E-value=2.9e-08  Score=92.96  Aligned_cols=190  Identities=22%  Similarity=0.184  Sum_probs=122.9

Q ss_pred             CCCCcEEecCCCcCCccC-chhhhccCccceeeccccccccccchhhhcC-CCCCeEee-----------cCCCCCCCCC
Q 017542           86 LKSLRSLDLSYCINLESF-PEILEKMELLEEINLEEASNIKELPSSIENL-EGLKQLKL-----------TGCTKLGSLP  152 (369)
Q Consensus        86 ~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l-----------~~~~~~~~~~  152 (369)
                      +++++.|.+-........ |-.+..+..|++|.+.+|.....  ..+..+ ..|++|.=           +.|  .+++.
T Consensus        83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~Sl~Al~~v~asc--ggd~~  158 (1096)
T KOG1859|consen   83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHNSLDALRHVFASC--GGDIS  158 (1096)
T ss_pred             HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhccHHHHHHHHHHh--ccccc
Confidence            556666666553333222 55566778888888888765431  011000 12222211           111  11111


Q ss_pred             cccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCE
Q 017542          153 ESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLES  232 (369)
Q Consensus       153 ~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~  232 (369)
                      .+ .....|...+.+.|.+..+.+.+.-++.+++|++++|+...+. .+..+++|++|+++.|.+..+|..-..--.|..
T Consensus       159 ns-~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~  236 (1096)
T KOG1859|consen  159 NS-PVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQL  236 (1096)
T ss_pred             cc-hhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhhee
Confidence            10 1234677778888888877778888899999999999977666 578899999999999999887654322234999


Q ss_pred             EEccCCcCCccchhhccCCcCcEecccCCcccccCCC-----CCcccceecccccc
Q 017542          233 LNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPE-----LPLLLVMLGASDCK  283 (369)
Q Consensus       233 L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-----~~~~L~~L~l~~c~  283 (369)
                      |.+.+|.++.+. .+.++++|+.||++.| -+....+     ...+|..|.+.|.|
T Consensus       237 L~lrnN~l~tL~-gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  237 LNLRNNALTTLR-GIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             eeecccHHHhhh-hHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCc
Confidence            999999988776 5778999999999998 3433332     12456667776654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.21  E-value=1.9e-07  Score=78.68  Aligned_cols=81  Identities=25%  Similarity=0.262  Sum_probs=45.8

Q ss_pred             CeeEEecCCccCcc---cCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCc-cCchhhhccCcccee
Q 017542           41 NVVELNLMCTPIEE---VPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLE-SFPEILEKMELLEEI  116 (369)
Q Consensus        41 ~L~~L~l~~~~~~~---l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L  116 (369)
                      .++.+++.+|.+.+   +-..+.++|+|++|+++.|.....+..--....+|+.|.+.+..... ........+|.+++|
T Consensus        72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel  151 (418)
T KOG2982|consen   72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL  151 (418)
T ss_pred             hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence            66777777777753   33345677777777777765443332211235577777776643221 123445566666666


Q ss_pred             ecccc
Q 017542          117 NLEEA  121 (369)
Q Consensus       117 ~l~~~  121 (369)
                      .++.|
T Consensus       152 HmS~N  156 (418)
T KOG2982|consen  152 HMSDN  156 (418)
T ss_pred             hhccc
Confidence            66655

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.17  E-value=9.2e-06  Score=73.20  Aligned_cols=31  Identities=39%  Similarity=0.588  Sum_probs=13.0

Q ss_pred             CCCcEEeecCCCCCCCCccccCCCCCcEEeccC
Q 017542          182 NKLETLSLFECRGLVLPPLLSGLSSLKKLELGD  214 (369)
Q Consensus       182 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~  214 (369)
                      ++|+.|++++|....+|..+.  .+|+.|.++.
T Consensus       156 sSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~  186 (426)
T PRK15386        156 PSLKTLSLTGCSNIILPEKLP--ESLQSITLHI  186 (426)
T ss_pred             CcccEEEecCCCcccCccccc--ccCcEEEecc
Confidence            345555555444333332221  3445555443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.15  E-value=2.5e-06  Score=51.30  Aligned_cols=39  Identities=38%  Similarity=0.573  Sum_probs=25.4

Q ss_pred             CCCCEEEccCCcCCccchhhccCCcCcEecccCCcccccC
Q 017542          228 SSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSL  267 (369)
Q Consensus       228 ~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~  267 (369)
                      ++|++|++++|+++++|..++.+++|+.|++++| .++++
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i   39 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDI   39 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCC
Confidence            3567777777777777766777777777777777 45544

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.10  E-value=1.4e-06  Score=72.64  Aligned_cols=193  Identities=23%  Similarity=0.222  Sum_probs=94.6

Q ss_pred             CCCCCCCCEEeCcCCcccccc----cccccCCCCCcEEecCCCcCC---ccCc-------hhhhccCccceeeccccccc
Q 017542           59 IECLPNLETLEMSFCNSLKRL----STSICKLKSLRSLDLSYCINL---ESFP-------EILEKMELLEEINLEEASNI  124 (369)
Q Consensus        59 ~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~---~~~~-------~~~~~l~~L~~L~l~~~~~~  124 (369)
                      +..+..+..+++++|...+..    ...+.+-.+|+..+++.-...   ..++       ..+-.|++|+..++++|...
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            344667777888887665432    233344566777666652111   1111       23455677777777766655


Q ss_pred             cccchh----hhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCc-
Q 017542          125 KELPSS----IENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPP-  199 (369)
Q Consensus       125 ~~~~~~----~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-  199 (369)
                      ...|+.    +..-+.|++|.+++|.....-...++  +.|.+|-  .|      .-...-+.|+....+.|+....+. 
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rig--kal~~la--~n------KKaa~kp~Le~vicgrNRlengs~~  175 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIG--KALFHLA--YN------KKAADKPKLEVVICGRNRLENGSKE  175 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecCCCCccchhHHH--HHHHHHH--HH------hhhccCCCceEEEeccchhccCcHH
Confidence            544432    33445666666666542211111010  0111110  00      011233556666666666333221 


Q ss_pred             ----cccCCCCCcEEeccCCCCccC------CCCCCCCCCCCEEEccCCcCCc-----cchhhccCCcCcEecccCC
Q 017542          200 ----LLSGLSSLKKLELGDCEIMEI------PPDIGCLSSLESLNLSGNNIES-----LPTSISQLSRLRWLYLVNC  261 (369)
Q Consensus       200 ----~~~~~~~L~~L~l~~~~~~~~------~~~~~~~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~  261 (369)
                          .+..-..|+.+.+..|.+..-      ...+..+.+|+.||+..|.++.     +...+..-+.|+.|.+.+|
T Consensus       176 ~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC  252 (388)
T COG5238         176 LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC  252 (388)
T ss_pred             HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence                222234566666666666541      1123456667777777766652     1223344455666666666

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.04  E-value=4.8e-06  Score=50.06  Aligned_cols=40  Identities=38%  Similarity=0.737  Sum_probs=27.7

Q ss_pred             CCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccc
Q 017542          205 SSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLP  244 (369)
Q Consensus       205 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~  244 (369)
                      ++|++|++++|++.+++..+..+++|++|++++|.+++++
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            3577777777777776665777777777777777777665

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.98  E-value=2.9e-06  Score=82.57  Aligned_cols=156  Identities=20%  Similarity=0.284  Sum_probs=92.5

Q ss_pred             CCCcEEecCCCcCCcc-Cc-hhhhccCccceeecccccccc-ccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhh
Q 017542           87 KSLRSLDLSYCINLES-FP-EILEKMELLEEINLEEASNIK-ELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLER  163 (369)
Q Consensus        87 ~~L~~L~l~~~~~~~~-~~-~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  163 (369)
                      .+|++|++++...... .+ ..-.-+|.|+.|.+.+-.... ++.....++++|..||+++++ ++.+ .+++++++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHH
Confidence            5788888877544432 22 233457888888887433222 333445577888888888844 4444 45778888888


Q ss_pred             hccCcccCCCCC--cccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCcc-CCCCCCCCCCCCEEEccCCcC
Q 017542          164 LHAGLLAIPQAP--SSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIME-IPPDIGCLSSLESLNLSGNNI  240 (369)
Q Consensus       164 L~l~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~l  240 (369)
                      |.+.+-.+....  ..+.++++|+.||++.......+.                 +.. ..+.-..+|+|+.||.|++.+
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~-----------------ii~qYlec~~~LpeLrfLDcSgTdi  262 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTK-----------------IIEQYLECGMVLPELRFLDCSGTDI  262 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchH-----------------HHHHHHHhcccCccccEEecCCcch
Confidence            887776665322  345567777777777654222221                 000 011123467888888888777


Q ss_pred             C--ccchhhccCCcCcEecccCC
Q 017542          241 E--SLPTSISQLSRLRWLYLVNC  261 (369)
Q Consensus       241 ~--~~~~~~~~~~~L~~L~l~~~  261 (369)
                      .  .+...+...|+|+.+.+-+|
T Consensus       263 ~~~~le~ll~sH~~L~~i~~~~~  285 (699)
T KOG3665|consen  263 NEEILEELLNSHPNLQQIAALDC  285 (699)
T ss_pred             hHHHHHHHHHhCccHhhhhhhhh
Confidence            6  22334456677777765544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.88  E-value=3e-06  Score=80.47  Aligned_cols=108  Identities=30%  Similarity=0.427  Sum_probs=52.9

Q ss_pred             CeeEEec-CCccCcc--cCccCCCCCCCCEEeCcCC-ccccccc----ccccCCCCCcEEecCCCcCCcc--Cchhhhcc
Q 017542           41 NVVELNL-MCTPIEE--VPLSIECLPNLETLEMSFC-NSLKRLS----TSICKLKSLRSLDLSYCINLES--FPEILEKM  110 (369)
Q Consensus        41 ~L~~L~l-~~~~~~~--l~~~~~~~~~L~~L~l~~~-~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l  110 (369)
                      .|+.+.+ .+..++.  +......+++|+.|++++| ......+    .....+++|+.|+++++...++  +......|
T Consensus       189 ~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c  268 (482)
T KOG1947|consen  189 LLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRC  268 (482)
T ss_pred             hhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhC
Confidence            5555555 2333433  2233455666666666652 2211111    1223456666666666653322  11222336


Q ss_pred             Cccceeecccccccc--ccchhhhcCCCCCeEeecCCCCC
Q 017542          111 ELLEEINLEEASNIK--ELPSSIENLEGLKQLKLTGCTKL  148 (369)
Q Consensus       111 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~  148 (369)
                      ++|++|.+.+|..++  .+......+++|++|++++|..+
T Consensus       269 ~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  269 PNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             CCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            666666665555332  23333445666777776666554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.84  E-value=3.5e-07  Score=86.83  Aligned_cols=109  Identities=27%  Similarity=0.387  Sum_probs=48.1

Q ss_pred             cCccceeeccccccccc--cchhhhcCCCCCeEeecCC-CCCCCCC----cccCCCcchhhhccCccc-CCCC-Ccccc-
Q 017542          110 MELLEEINLEEASNIKE--LPSSIENLEGLKQLKLTGC-TKLGSLP----ESLGNLKSLERLHAGLLA-IPQA-PSSIV-  179 (369)
Q Consensus       110 l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~-~~~~~~~----~~~~~l~~L~~L~l~~~~-~~~~-~~~l~-  179 (369)
                      ++.|+.+.+.++..+..  +......++.|+.|++++| ......+    .....+++|+.++++++. ++.. ...+. 
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            45555555555544443  2233445555555555542 2211111    112334555555555554 3211 11111 


Q ss_pred             cCCCCcEEeecCCCC-C--CCCccccCCCCCcEEeccCCCCc
Q 017542          180 DLNKLETLSLFECRG-L--VLPPLLSGLSSLKKLELGDCEIM  218 (369)
Q Consensus       180 ~~~~L~~L~l~~~~~-~--~~~~~~~~~~~L~~L~l~~~~~~  218 (369)
                      .+++|+.|.+.+|.. +  .+......++.|+.|++++|...
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            255666666555552 1  12223344555666666655543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.76  E-value=5.5e-06  Score=80.71  Aligned_cols=103  Identities=20%  Similarity=0.148  Sum_probs=62.4

Q ss_pred             CcchhhhccCcccCC--CCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccC--CCCCCCCCCCCEE
Q 017542          158 LKSLERLHAGLLAIP--QAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEI--PPDIGCLSSLESL  233 (369)
Q Consensus       158 l~~L~~L~l~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~L~~L  233 (369)
                      +|+|+.|.+.+-.+.  .+.....++++|..||++++....+ ..++.+++|+.|.+.+-.+...  ...+..+++|+.|
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL  225 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL  225 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence            455555555544332  1122344566777777777765555 3466677777777766665542  2236778888889


Q ss_pred             EccCCcCCccc-------hhhccCCcCcEecccCC
Q 017542          234 NLSGNNIESLP-------TSISQLSRLRWLYLVNC  261 (369)
Q Consensus       234 ~l~~~~l~~~~-------~~~~~~~~L~~L~l~~~  261 (369)
                      |+|.......+       +.-..+|+|+.||.++.
T Consensus       226 DIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT  260 (699)
T KOG3665|consen  226 DISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT  260 (699)
T ss_pred             eccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence            88886444222       12235789999999876

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.63  E-value=2.4e-06  Score=63.87  Aligned_cols=77  Identities=26%  Similarity=0.368  Sum_probs=33.7

Q ss_pred             CcEEeecCCCCCCCCccc-cCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccchhhccCCcCcEecccC
Q 017542          184 LETLSLFECRGLVLPPLL-SGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVN  260 (369)
Q Consensus       184 L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~  260 (369)
                      |+..++++|....+|+.+ .+++.++.|++++|.++++|..+..++.|+.|+++.|.+...|..+..+.++-.|+.-+
T Consensus        55 l~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~  132 (177)
T KOG4579|consen   55 LTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPE  132 (177)
T ss_pred             EEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCC
Confidence            333344444444444322 23334444444444444444444444444444444444444444443344444444333

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.62  E-value=9.6e-05  Score=59.22  Aligned_cols=99  Identities=26%  Similarity=0.278  Sum_probs=50.8

Q ss_pred             hhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCcccc-CCCCCcEEeccCCCCccCC--CCCCCCCCCCEEEccC
Q 017542          161 LERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLS-GLSSLKKLELGDCEIMEIP--PDIGCLSSLESLNLSG  237 (369)
Q Consensus       161 L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~  237 (369)
                      ...+++++|.+..+ ..+..++.|..|.+++|.+..+.+.+. .+++|..|.+.+|.+.++.  ..+..||.|++|.+-+
T Consensus        44 ~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~  122 (233)
T KOG1644|consen   44 FDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG  122 (233)
T ss_pred             cceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence            34445555554433 234445556666666655544443222 2345666666666665532  2245566666666666


Q ss_pred             CcCCccc----hhhccCCcCcEecccC
Q 017542          238 NNIESLP----TSISQLSRLRWLYLVN  260 (369)
Q Consensus       238 ~~l~~~~----~~~~~~~~L~~L~l~~  260 (369)
                      |.+++-.    ..+..+|+|+.||+.+
T Consensus       123 Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  123 NPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             CchhcccCceeEEEEecCcceEeehhh
Confidence            6555322    1234556666666544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.60  E-value=2.9e-06  Score=63.41  Aligned_cols=86  Identities=19%  Similarity=0.178  Sum_probs=42.3

Q ss_pred             cchhhhccCcccCCCCCccccc-CCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccC
Q 017542          159 KSLERLHAGLLAIPQAPSSIVD-LNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSG  237 (369)
Q Consensus       159 ~~L~~L~l~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~  237 (369)
                      .+|...++++|.+..+|..|.. .+.++.|++++|....+|..+..++.|+.|+++.|.+...|..+..+.++-.|+.-+
T Consensus        53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~  132 (177)
T KOG4579|consen   53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPE  132 (177)
T ss_pred             ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCC
Confidence            3344444455554444443332 234455555555555555445555555555555555555444444455555555555


Q ss_pred             CcCCccc
Q 017542          238 NNIESLP  244 (369)
Q Consensus       238 ~~l~~~~  244 (369)
                      |.+..++
T Consensus       133 na~~eid  139 (177)
T KOG4579|consen  133 NARAEID  139 (177)
T ss_pred             CccccCc
Confidence            5554444

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.58  E-value=1.8e-05  Score=66.19  Aligned_cols=179  Identities=20%  Similarity=0.196  Sum_probs=104.6

Q ss_pred             cCCeeEEecCCccCc-----ccCccCCCCCCCCEEeCcCCcc---cccc-------cccccCCCCCcEEecCCCcCCccC
Q 017542           39 SGNVVELNLMCTPIE-----EVPLSIECLPNLETLEMSFCNS---LKRL-------STSICKLKSLRSLDLSYCINLESF  103 (369)
Q Consensus        39 ~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~---~~~~-------~~~~~~~~~L~~L~l~~~~~~~~~  103 (369)
                      +..++.+++++|.|.     .+...+.+-++|+..++++-..   ...+       .+.+-+||.|+..+++.|-.....
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            348999999999986     3344466778999999986321   1122       234567999999999998666554


Q ss_pred             c----hhhhccCccceeecccccccccc----chh---------hhcCCCCCeEeecCCCCCCCCCc-----ccCCCcch
Q 017542          104 P----EILEKMELLEEINLEEASNIKEL----PSS---------IENLEGLKQLKLTGCTKLGSLPE-----SLGNLKSL  161 (369)
Q Consensus       104 ~----~~~~~l~~L~~L~l~~~~~~~~~----~~~---------~~~l~~L~~L~l~~~~~~~~~~~-----~~~~l~~L  161 (369)
                      |    +.+++-+.|.+|.+.+|......    ..+         ..+-|.|+.+...+| .+...+.     .+..-..|
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN-Rlengs~~~~a~~l~sh~~l  187 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN-RLENGSKELSAALLESHENL  187 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc-hhccCcHHHHHHHHHhhcCc
Confidence            4    45678889999999965433211    111         123456777766663 3333221     12233466


Q ss_pred             hhhccCcccCCC--CC----cccccCCCCcEEeecCCCCCC-----CCccccCCCCCcEEeccCCCCc
Q 017542          162 ERLHAGLLAIPQ--AP----SSIVDLNKLETLSLFECRGLV-----LPPLLSGLSSLKKLELGDCEIM  218 (369)
Q Consensus       162 ~~L~l~~~~~~~--~~----~~l~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~  218 (369)
                      +++.+..|+|..  +.    ..+..+.+|+.|++..|..+.     +...+..|+.|+.|.+..|-++
T Consensus       188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls  255 (388)
T COG5238         188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS  255 (388)
T ss_pred             eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence            666777666651  10    123345666666666655321     1123444555555555555443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.38  E-value=0.00038  Score=55.87  Aligned_cols=81  Identities=27%  Similarity=0.429  Sum_probs=65.0

Q ss_pred             CCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCC-CCCCCCEEEccCCcCCccc--hhhccCCcCcEec
Q 017542          181 LNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIG-CLSSLESLNLSGNNIESLP--TSISQLSRLRWLY  257 (369)
Q Consensus       181 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~~~--~~~~~~~~L~~L~  257 (369)
                      ......+++++|....++. +..++.|.+|.+.+|.++.+...+. .+++|..|.+.+|++..+.  +.+..||.|++|.
T Consensus        41 ~d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            3467788899888665554 6678999999999999999655554 4688999999999888443  4578899999999


Q ss_pred             ccCCc
Q 017542          258 LVNCV  262 (369)
Q Consensus       258 l~~~~  262 (369)
                      +-+|+
T Consensus       120 ll~Np  124 (233)
T KOG1644|consen  120 LLGNP  124 (233)
T ss_pred             ecCCc
Confidence            99985

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.18  E-value=0.00029  Score=58.80  Aligned_cols=58  Identities=40%  Similarity=0.553  Sum_probs=24.1

Q ss_pred             CCCCcEEeccCC--CCcc-CCCCCCCCCCCCEEEccCCcCCccc--hhhccCCcCcEecccCC
Q 017542          204 LSSLKKLELGDC--EIME-IPPDIGCLSSLESLNLSGNNIESLP--TSISQLSRLRWLYLVNC  261 (369)
Q Consensus       204 ~~~L~~L~l~~~--~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~~L~~L~l~~~  261 (369)
                      +++|++|.++.|  ++.. +...+..+|+|+++++++|++..+.  ..+..+++|..|++.+|
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~  126 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNC  126 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccC
Confidence            344444444444  2222 2222333355555555555444221  12334444455555544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.94  E-value=0.0006  Score=56.99  Aligned_cols=56  Identities=23%  Similarity=0.210  Sum_probs=23.9

Q ss_pred             CeeEEecCCccCcccCccCCCCCCCCEEeCcCC--cccccccccccCCCCCcEEecCCC
Q 017542           41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFC--NSLKRLSTSICKLKSLRSLDLSYC   97 (369)
Q Consensus        41 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~   97 (369)
                      .|+.+++.+..++.+.. +..+++|++|.++.|  .....++.....+++|++|++++|
T Consensus        44 ~le~ls~~n~gltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N  101 (260)
T KOG2739|consen   44 ELELLSVINVGLTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN  101 (260)
T ss_pred             chhhhhhhccceeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence            44444444433333222 333455555555554  222233322333455555555554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.94  E-value=6.3e-05  Score=63.25  Aligned_cols=97  Identities=26%  Similarity=0.310  Sum_probs=54.8

Q ss_pred             CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCc--hhhhccCccceeec
Q 017542           41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFP--EILEKMELLEEINL  118 (369)
Q Consensus        41 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l  118 (369)
                      +.++|+..++++.+|.. ...|+.|++|.|+.|... .+.. +..|.+|++|+|..|.+. ++.  +-+.++++|+.|.+
T Consensus        20 ~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkIs-sL~p-l~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKIS-SLAP-LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HhhhhcccCCCccHHHH-HHhcccceeEEeeccccc-cchh-HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhh
Confidence            45566666666665533 345677777777765433 2222 556777777777665332 222  23456777777777


Q ss_pred             cccccccccch-----hhhcCCCCCeEe
Q 017542          119 EEASNIKELPS-----SIENLEGLKQLK  141 (369)
Q Consensus       119 ~~~~~~~~~~~-----~~~~l~~L~~L~  141 (369)
                      ..|+.....+.     .+..+++|+.|+
T Consensus        96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   96 DENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ccCCcccccchhHHHHHHHHcccchhcc
Confidence            76666553322     234566666664

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.76  E-value=7.8e-05  Score=62.70  Aligned_cols=97  Identities=19%  Similarity=0.214  Sum_probs=74.9

Q ss_pred             CCCccEEecCCCCCccccC--CccCCeeEEecCCccCcccCccCCCCCCCCEEeCcCCccccccc--ccccCCCCCcEEe
Q 017542           18 FISSIKIDCYKCVNLREFP--RISGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLS--TSICKLKSLRSLD   93 (369)
Q Consensus        18 ~~~L~~L~l~~~~~l~~~~--~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~   93 (369)
                      +.+.+.|++.||. +.+|.  ..++.|+.|.|+-|.|+.+.. +..|++|+.|+|+.|.... +.  .-+.++++|+.|.
T Consensus        18 l~~vkKLNcwg~~-L~DIsic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   18 LENVKKLNCWGCG-LDDISICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHHhhhhcccCCC-ccHHHHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhHh
Confidence            4567889999998 88765  456699999999999998755 7889999999999975433 22  2367899999999


Q ss_pred             cCCCcCCccCc-----hhhhccCccceee
Q 017542           94 LSYCINLESFP-----EILEKMELLEEIN  117 (369)
Q Consensus        94 l~~~~~~~~~~-----~~~~~l~~L~~L~  117 (369)
                      |..|+--...+     ..+.-+++|++||
T Consensus        95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hccCCcccccchhHHHHHHHHcccchhcc
Confidence            98876544433     4567788999886

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.39  E-value=0.012  Score=44.60  Aligned_cols=11  Identities=18%  Similarity=0.486  Sum_probs=4.4

Q ss_pred             CCCCCcEEecc
Q 017542          203 GLSSLKKLELG  213 (369)
Q Consensus       203 ~~~~L~~L~l~  213 (369)
                      .+++++.+.+.
T Consensus        79 ~~~~l~~i~~~   89 (129)
T PF13306_consen   79 NCTNLKNIDIP   89 (129)
T ss_dssp             T-TTECEEEET
T ss_pred             ccccccccccC
Confidence            34444444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.37  E-value=0.0088  Score=45.45  Aligned_cols=81  Identities=16%  Similarity=0.215  Sum_probs=30.5

Q ss_pred             CCCCCCCCEEeCcCCcccccc-cccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCC
Q 017542           59 IECLPNLETLEMSFCNSLKRL-STSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGL  137 (369)
Q Consensus        59 ~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L  137 (369)
                      +..+++|+.+.+.. . ...+ ...|..+.+|+.+.+... ....-...+..+++++.+.+.+ .........+..++++
T Consensus         8 F~~~~~l~~i~~~~-~-~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    8 FYNCSNLESITFPN-T-IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HhCCCCCCEEEECC-C-eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            44555566555553 1 2222 233455555666665542 2222223445555555555542 1111122234445555


Q ss_pred             CeEeec
Q 017542          138 KQLKLT  143 (369)
Q Consensus       138 ~~L~l~  143 (369)
                      +.+.+.
T Consensus        84 ~~i~~~   89 (129)
T PF13306_consen   84 KNIDIP   89 (129)
T ss_dssp             CEEEET
T ss_pred             cccccC
Confidence            555553

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.97  E-value=0.0036  Score=31.20  Aligned_cols=20  Identities=60%  Similarity=0.923  Sum_probs=12.1

Q ss_pred             CCCEEEccCCcCCccchhhc
Q 017542          229 SLESLNLSGNNIESLPTSIS  248 (369)
Q Consensus       229 ~L~~L~l~~~~l~~~~~~~~  248 (369)
                      +|++|++++|.++.+|..++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             TESEEEETSSEESEEGTTTT
T ss_pred             CccEEECCCCcCEeCChhhc
Confidence            35666666666666665443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.38  E-value=0.013  Score=27.06  Aligned_cols=15  Identities=47%  Similarity=0.724  Sum_probs=6.0

Q ss_pred             CCCEEEccCCcCCcc
Q 017542          229 SLESLNLSGNNIESL  243 (369)
Q Consensus       229 ~L~~L~l~~~~l~~~  243 (369)
                      +|++|++++|+++.+
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            455555555554443

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.05  E-value=0.015  Score=28.93  Aligned_cols=16  Identities=19%  Similarity=0.316  Sum_probs=6.5

Q ss_pred             eeEEecCCccCcccCc
Q 017542           42 VVELNLMCTPIEEVPL   57 (369)
Q Consensus        42 L~~L~l~~~~~~~l~~   57 (369)
                      |++|++++|.++.+|.
T Consensus         2 L~~Ldls~n~l~~ip~   17 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPS   17 (22)
T ss_dssp             ESEEEETSSEESEEGT
T ss_pred             ccEEECCCCcCEeCCh
Confidence            3444444444444433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.88  E-value=0.0049  Score=49.67  Aligned_cols=84  Identities=19%  Similarity=0.148  Sum_probs=41.8

Q ss_pred             CCcEEeccCCCCcc-CCCCCCCCCCCCEEEccCCc-CCccc-hhh-ccCCcCcEecccCCcccccCCC----CCccccee
Q 017542          206 SLKKLELGDCEIME-IPPDIGCLSSLESLNLSGNN-IESLP-TSI-SQLSRLRWLYLVNCVKLQSLPE----LPLLLVML  277 (369)
Q Consensus       206 ~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~-l~~~~-~~~-~~~~~L~~L~l~~~~~l~~~~~----~~~~L~~L  277 (369)
                      .++.++-+++.+.. -.+.+..++.++.|.+.+|. +.+.- ..+ +-.++|+.|+|++|+.+++-+-    -+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            34555555555544 22335555666666666652 22111 111 2346677777777766665331    23455555


Q ss_pred             ccccccccccCC
Q 017542          278 GASDCKRLQFLP  289 (369)
Q Consensus       278 ~l~~c~~L~~l~  289 (369)
                      .+++.+....+.
T Consensus       182 ~l~~l~~v~~~e  193 (221)
T KOG3864|consen  182 HLYDLPYVANLE  193 (221)
T ss_pred             HhcCchhhhchH
Confidence            555555444333

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.08  E-value=0.022  Score=46.07  Aligned_cols=15  Identities=33%  Similarity=0.864  Sum_probs=6.4

Q ss_pred             CCCCeEeecCCCCCC
Q 017542          135 EGLKQLKLTGCTKLG  149 (369)
Q Consensus       135 ~~L~~L~l~~~~~~~  149 (369)
                      ++|+.|++++|..++
T Consensus       151 ~~L~~L~lsgC~rIT  165 (221)
T KOG3864|consen  151 PSLQDLDLSGCPRIT  165 (221)
T ss_pred             cchheeeccCCCeec
Confidence            344444444444433

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.09  E-value=0.0013  Score=61.67  Aligned_cols=36  Identities=28%  Similarity=0.154  Sum_probs=17.0

Q ss_pred             CCEEeCcCCccccc----ccccccCCCCCcEEecCCCcCC
Q 017542           65 LETLEMSFCNSLKR----LSTSICKLKSLRSLDLSYCINL  100 (369)
Q Consensus        65 L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~  100 (369)
                      +..+.+.+|.....    +...+...+.|+.|++++|...
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~  128 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG  128 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence            44555555543321    2233344555566666555443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.72  E-value=0.19  Score=25.95  Aligned_cols=20  Identities=40%  Similarity=0.662  Sum_probs=13.9

Q ss_pred             CCCCEEEccCCcCCccchhh
Q 017542          228 SSLESLNLSGNNIESLPTSI  247 (369)
Q Consensus       228 ~~L~~L~l~~~~l~~~~~~~  247 (369)
                      ++|++|++++|.++.+|..+
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHH
Confidence            46777777777777776543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.72  E-value=0.19  Score=25.95  Aligned_cols=20  Identities=40%  Similarity=0.662  Sum_probs=13.9

Q ss_pred             CCCCEEEccCCcCCccchhh
Q 017542          228 SSLESLNLSGNNIESLPTSI  247 (369)
Q Consensus       228 ~~L~~L~l~~~~l~~~~~~~  247 (369)
                      ++|++|++++|.++.+|..+
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHH
Confidence            46777777777777776543

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=90.86  E-value=0.17  Score=26.17  Aligned_cols=17  Identities=29%  Similarity=0.468  Sum_probs=12.9

Q ss_pred             CCcCcEecccCCccccc
Q 017542          250 LSRLRWLYLVNCVKLQS  266 (369)
Q Consensus       250 ~~~L~~L~l~~~~~l~~  266 (369)
                      +++|++|++++|+.+++
T Consensus         1 c~~L~~L~l~~C~~itD   17 (26)
T smart00367        1 CPNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCCEeCCCCCCCcCH
Confidence            46788888888877765

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=90.04  E-value=0.0016  Score=61.00  Aligned_cols=174  Identities=24%  Similarity=0.285  Sum_probs=75.0

Q ss_pred             CcEEecCCCcCCcc----CchhhhccCccceeeccccccccccc----hhhhcC-CCCCeEeecCCCCCCC----CCccc
Q 017542           89 LRSLDLSYCINLES----FPEILEKMELLEEINLEEASNIKELP----SSIENL-EGLKQLKLTGCTKLGS----LPESL  155 (369)
Q Consensus        89 L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~l-~~L~~L~l~~~~~~~~----~~~~~  155 (369)
                      +..|.+.+|.....    +...+...+.|+.|++++|.......    ..+... ..+++|.+..|.....    +...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            55555555544332    22334445556666666555442111    111111 2344444444433322    12233


Q ss_pred             CCCcchhhhccCcccCCC-----CCccc----ccCCCCcEEeecCCCCCCC-----CccccCCCC-CcEEeccCCCCcc-
Q 017542          156 GNLKSLERLHAGLLAIPQ-----APSSI----VDLNKLETLSLFECRGLVL-----PPLLSGLSS-LKKLELGDCEIME-  219 (369)
Q Consensus       156 ~~l~~L~~L~l~~~~~~~-----~~~~l----~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~-L~~L~l~~~~~~~-  219 (369)
                      .....++.++++.|.+..     ++..+    ....++++|.+++|..+..     ...+...++ +..+++..|.+.+ 
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            345555556555555431     11111    2244555555555553211     112222233 4445555555543 


Q ss_pred             ----CCCCCCCC-CCCCEEEccCCcCC-----ccchhhccCCcCcEecccCCc
Q 017542          220 ----IPPDIGCL-SSLESLNLSGNNIE-----SLPTSISQLSRLRWLYLVNCV  262 (369)
Q Consensus       220 ----~~~~~~~~-~~L~~L~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~  262 (369)
                          +...+..+ +.+++++++.|.++     .+...+..++.++.+.++.|+
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~  301 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP  301 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence                11122222 45566666666554     233344455566666665553

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=83.77  E-value=0.016  Score=47.85  Aligned_cols=85  Identities=19%  Similarity=0.109  Sum_probs=53.4

Q ss_pred             ccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccchhhccCCcCcEecc
Q 017542          179 VDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYL  258 (369)
Q Consensus       179 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l  258 (369)
                      ......+.||++.++...+-..++.+..+..|+++.+.+.-+|..+.....+..+++..|..+..|...+..|.+++++.
T Consensus        39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence            34455566666666544444444555566666666666666666666666666666666777777766677777777777


Q ss_pred             cCCcc
Q 017542          259 VNCVK  263 (369)
Q Consensus       259 ~~~~~  263 (369)
                      .+++.
T Consensus       119 k~~~~  123 (326)
T KOG0473|consen  119 KKTEF  123 (326)
T ss_pred             ccCcc
Confidence            66653

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=83.23  E-value=0.87  Score=23.55  Aligned_cols=18  Identities=50%  Similarity=0.761  Sum_probs=11.8

Q ss_pred             CCCCEEEccCCcCCccch
Q 017542          228 SSLESLNLSGNNIESLPT  245 (369)
Q Consensus       228 ~~L~~L~l~~~~l~~~~~  245 (369)
                      +.|+.|++++|+++.+|+
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            456677777777666664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	369
4fcg_A	328	Structure Of The Leucine-Rich Repeat Domain Of The		2e-06

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 69/165 (41%), Gaps = 14/165 (8%)
Query: 9   LRCFPQNIHFISSIK-IDCYKCVNLREFPR------ISG------NVVELNLMCTPIEEV 55
           LR  P +I  ++ ++ +    C  L E P        SG      N+  L L  T I  +
Sbjct: 139 LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL 198
Query: 56  PLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPXXXXXXXXXXX 115
           P SI  L NL++L++   + L  L  +I  L  L  LDL  C  L ++P           
Sbjct: 199 PASIANLQNLKSLKIR-NSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257
Query: 116 XXXXXASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKS 160
                 SN+  LP  I  L  L++L L GC  L  LP  +  L +
Sbjct: 258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	369
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-45
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-38
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-32
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-30
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-23
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-29
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-25
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-27
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-14
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-16
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-10
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-10
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-09
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	5e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	3e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	8e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	9e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  158 bits (401), Expect = 1e-45
 Identities = 66/282 (23%), Positives = 115/282 (40%), Gaps = 16/282 (5%)

Query: 1   MIMAGCESLRCFPQNIHFISSIKIDCYKCVNLREFPRISGNVVELNLMCTPIEEVPLSIE 60
           +   G  +LR +   +              +       S N          ++     +E
Sbjct: 17  LYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLE 76

Query: 61  CL--PNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINL 118
               P    LE+     L +      +L  L+ + +     L   P+ +++   LE + L
Sbjct: 77  DATQPGRVALELR-SVPLPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTL 134

Query: 119 EEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGN---------LKSLERLHAGLL 169
              + ++ LP+SI +L  L++L +  C +L  LPE L +         L +L+ L     
Sbjct: 135 AR-NPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT 193

Query: 170 AIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDC-EIMEIPPDIGCLS 228
            I   P+SI +L  L++L +       L P +  L  L++L+L  C  +   PP  G  +
Sbjct: 194 GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA 253

Query: 229 SLESLNLSG-NNIESLPTSISQLSRLRWLYLVNCVKLQSLPE 269
            L+ L L   +N+ +LP  I +L++L  L L  CV L  LP 
Sbjct: 254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  138 bits (350), Expect = 4e-38
 Identities = 63/295 (21%), Positives = 104/295 (35%), Gaps = 29/295 (9%)

Query: 17  HFISSIKIDCYKCVNLREFPRISGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSL 76
           H      +       LR +  +                         N +    +   +L
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRT-GRAL 68

Query: 77  KRLSTSI--CKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENL 134
           K  +  +         +L+L     L  FP+   ++  L+ + ++  + + ELP +++  
Sbjct: 69  KATADLLEDATQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDA-AGLMELPDTMQQF 126

Query: 135 EGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRG 194
            GL+ L L     L +LP S+ +L  L  L             I    +L  L       
Sbjct: 127 AGLETLTLARN-PLRALPASIASLNRLRELS------------IRACPELTELPEPLAS- 172

Query: 195 LVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLR 254
                   GL +L+ L L    I  +P  I  L +L+SL +  + + +L  +I  L +L 
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLE 232

Query: 255 WLYLVNCVKLQSLPE----LPLLLVMLGASDCKRLQFLPE----LTSCLEELDAS 301
            L L  C  L++ P        L   L   DC  L  LP     LT  LE+LD  
Sbjct: 233 ELDLRGCTALRNYPPIFGGRAPLKR-LILKDCSNLLTLPLDIHRLTQ-LEKLDLR 285

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  122 bits (309), Expect = 2e-32
 Identities = 53/263 (20%), Positives = 91/263 (34%), Gaps = 27/263 (10%)

Query: 58  SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEIN 117
                   E L      +L+     + + +   + D +   +                  
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGR 66

Query: 118 LEEASNIKELPSSIENL--EGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAP 175
                 +K     +E+    G   L+L     L   P+    L  L+ +      + + P
Sbjct: 67  -----ALKATADLLEDATQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMELP 120

Query: 176 SSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDC-EIMEIPPDIG--------- 225
            ++     LETL+L       LP  ++ L+ L++L +  C E+ E+P  +          
Sbjct: 121 DTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180

Query: 226 CLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLP-ELPLL--LVMLGASDC 282
            L +L+SL L    I SLP SI+ L  L+ L + N   L +L   +  L  L  L    C
Sbjct: 181 GLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGC 239

Query: 283 KRLQFLPE----LTSCLEELDAS 301
             L+  P         L+ L   
Sbjct: 240 TALRNYPPIFGGRAP-LKRLILK 261

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  106 bits (267), Expect = 2e-26
 Identities = 39/193 (20%), Positives = 68/193 (35%), Gaps = 7/193 (3%)

Query: 113 LEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIP 172
            E +  + ++ ++     +   +                     N  + +       A+ 
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRW----HSAWRQANSNNPQIETRTGRALK 69

Query: 173 QAPSSIVDLN--KLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSL 230
                + D        L L        P     LS L+ + +    +ME+P  +   + L
Sbjct: 70  ATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGL 129

Query: 231 ESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLP-ELPLLLVMLGASDCKRLQFLP 289
           E+L L+ N + +LP SI+ L+RLR L +  C +L  LP  L              LQ L 
Sbjct: 130 ETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLR 189

Query: 290 ELTSCLEELDASI 302
              + +  L ASI
Sbjct: 190 LEWTGIRSLPASI 202

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  103 bits (259), Expect = 2e-25
 Identities = 41/124 (33%), Positives = 61/124 (49%), Gaps = 1/124 (0%)

Query: 41  NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINL 100
           N+  L L  T I  +P SI  L NL++L++   + L  L  +I  L  L  LDL  C  L
Sbjct: 184 NLQSLRLEWTGIRSLPASIANLQNLKSLKIR-NSPLSALGPAIHHLPKLEELDLRGCTAL 242

Query: 101 ESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKS 160
            ++P I      L+ + L++ SN+  LP  I  L  L++L L GC  L  LP  +  L +
Sbjct: 243 RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302

Query: 161 LERL 164
              +
Sbjct: 303 NCII 306

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 75.8 bits (187), Expect = 1e-15
 Identities = 30/169 (17%), Positives = 49/169 (28%), Gaps = 27/169 (15%)

Query: 148 LGSLPESLGNLKSLERLH-AGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLS- 205
           +GS      +    E L+  G  A+      +    +                  +    
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQI 60

Query: 206 ---------------------SLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLP 244
                                    LEL    + + P     LS L+ + +    +  LP
Sbjct: 61  ETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELP 120

Query: 245 TSISQLSRLRWLYLVNCVKLQSLP-ELPLL--LVMLGASDCKRLQFLPE 290
            ++ Q + L  L L     L++LP  +  L  L  L    C  L  LPE
Sbjct: 121 DTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPE 168

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.8 bits (143), Expect = 7e-10
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 4/95 (4%)

Query: 41  NVVELNLM-CTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCIN 99
            + EL+L  CT +   P        L+ L +  C++L  L   I +L  L  LDL  C+N
Sbjct: 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289

Query: 100 LESFPEILEKMELLEEINLE---EASNIKELPSSI 131
           L   P ++ ++     I +    +A   +  P + 
Sbjct: 290 LSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  122 bits (308), Expect = 1e-30
 Identities = 44/249 (17%), Positives = 85/249 (34%), Gaps = 25/249 (10%)

Query: 52  IEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKME 111
            + +  S         +     N++  +S ++ +L  LR   +     +          E
Sbjct: 172 QKSIKKSSRITLKDTQIGQLS-NNITFVSKAVMRLTKLRQFYMGNSPFVAENIC-----E 225

Query: 112 LLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLH------ 165
             E  N E A   K      +NL+ L  +++  C  L  LP  L  L  ++ ++      
Sbjct: 226 AWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285

Query: 166 ---AGLLAIPQAPSSIVDLNKLETLSLFEC--RGLVLPPLLSGLSSLKKLELGDCEIMEI 220
                L    QA +      K++ + +     +   +   L  +  L  LE    ++   
Sbjct: 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGK 345

Query: 221 PPDIGCLSSLESLNLSGNNIESLPTSI-SQLSRLRWLYLVNCVKLQSLPELPLLLVMLGA 279
            P  G    L SLNL+ N I  +P +      ++  L   +  KL+ +P       +  A
Sbjct: 346 LPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN-KLKYIPN------IFDA 398

Query: 280 SDCKRLQFL 288
                +  +
Sbjct: 399 KSVSVMSAI 407

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 99.0 bits (247), Expect = 7e-23
 Identities = 35/236 (14%), Positives = 79/236 (33%), Gaps = 28/236 (11%)

Query: 54  EVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFP-EILEKMEL 112
            V  S++ +  L  LE  + N L+    +      L SL+L+Y   +   P       E 
Sbjct: 321 PVETSLQKMKKLGMLECLY-NQLEGKLPAFGSEIKLASLNLAYN-QITEIPANFCGFTEQ 378

Query: 113 LEEINLEEASNIKELPSSIE--NLEGLKQL-----KLTG--CTKLGSLPESLGNLKSLER 163
           +E ++    + +K +P+  +  ++  +  +     ++          L  +     ++  
Sbjct: 379 VENLSFAH-NKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS 437

Query: 164 LHAG---LLAIPQAPSSIVDLNKLETLSLFECR--------GLVLPPLLSGLSSLKKLEL 212
           ++     +   P         + L +++L                         L  ++L
Sbjct: 438 INLSNNQISKFP--KELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDL 495

Query: 213 GDCEIMEIPPDI--GCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQS 266
              ++ ++  D     L  L  ++LS N+    PT     S L+   + N    Q 
Sbjct: 496 RFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQG 551

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 91.6 bits (228), Expect = 3e-20
 Identities = 39/297 (13%), Positives = 86/297 (28%), Gaps = 44/297 (14%)

Query: 48  MCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSY----CINLESF 103
           +     +  +S+     +  L +    +  R+  +I +L  L  L L             
Sbjct: 66  LDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFG 125

Query: 104 PEILEKMELLEEINLEEASNIKELPSSIENLE--GLKQLKLTGCTKLGSLPESLGNLKSL 161
           P+ +      E+         K         +   L +  +    +  S+ +S       
Sbjct: 126 PKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD 185

Query: 162 ERLHAGLLAIPQAPSSIVDLNKLETLSLFECR--------------------GLVLPPLL 201
            ++      I     +++ L KL    +                                
Sbjct: 186 TQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKW 245

Query: 202 SGLSSLKKLELGDC-EIMEIPPDIGCLSSLESLNLSGNNIESLP---------TSISQLS 251
             L  L  +E+ +C  + ++P  +  L  ++ +N++ N   S                  
Sbjct: 246 DNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE 305

Query: 252 RLRWLYLVNCVKLQSLPELPLL-----LVMLGASDCKRLQFLPELTSC--LEELDAS 301
           +++ +Y+     L++ P    L     L ML     +    LP   S   L  L+ +
Sbjct: 306 KIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLA 361

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 90.9 bits (226), Expect = 3e-20
 Identities = 39/245 (15%), Positives = 89/245 (36%), Gaps = 31/245 (12%)

Query: 41  NVVELNLMCTPIEEVPLSIEC--LPNLETLEMSF-------CNSLKRLSTSICKLKSLRS 91
            V  L+     ++ +P   +   +  +  ++ S+         +   L  +  K  ++ S
Sbjct: 378 QVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS 437

Query: 92  LDLSYCINLESFP-EILEKMELLEEINLEE-------ASNIKELPSSIENLEGLKQLKLT 143
           ++LS    +  FP E+      L  INL          +++K+   + +N   L  + L 
Sbjct: 438 INLSNN-QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR 496

Query: 144 GCTKLGSLPESL--GNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGL------ 195
              KL  L +      L  L  +     +  + P+  ++ + L+   +   R        
Sbjct: 497 FN-KLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTL 555

Query: 196 -VLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLP-TSISQLSRL 253
              P  ++   SL +L++G  +I ++   I    ++  L++  N   S+  + +      
Sbjct: 556 REWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEA 613

Query: 254 RWLYL 258
               L
Sbjct: 614 GMYML 618

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 75.5 bits (186), Expect = 4e-15
 Identities = 29/247 (11%), Positives = 70/247 (28%), Gaps = 30/247 (12%)

Query: 71  SFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINL----EEASNIKE 126
                  +   S+     +  L L         P+ + ++  LE + L    E+ +    
Sbjct: 65  ELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLF 124

Query: 127 LPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQ---APSSIVDLNK 183
            P  I      +Q +        +  +        + +   + + PQ      S     K
Sbjct: 125 GPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLK 184

Query: 184 LETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIM--------------------EIPPD 223
              +         +   +  L+ L++  +G+   +                         
Sbjct: 185 DTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK 244

Query: 224 IGCLSSLESLNLSGNN-IESLPTSISQLSRLRWLYLVNCVKLQSLPELPLLLVMLG-ASD 281
              L  L  + +     +  LPT +  L  ++ + +    +  S  +L      L  A  
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN-RGISGEQLKDDWQALADAPV 303

Query: 282 CKRLQFL 288
            +++Q +
Sbjct: 304 GEKIQII 310

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  117 bits (295), Expect = 5e-29
 Identities = 44/258 (17%), Positives = 95/258 (36%), Gaps = 33/258 (12%)

Query: 56  PLSIECLPNLETLEMS-FCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLE 114
           P+  +   +L+  ++    N +  +S +I +L  L+ +  +                  E
Sbjct: 416 PIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANS-PFTYDNI----AVDWE 470

Query: 115 EINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQA 174
           + N + A   +    S  NL+ L  ++L  C  +  LP+ L +L  L+ L+         
Sbjct: 471 DANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN--------- 521

Query: 175 PSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPP--DIGCLSSLES 232
               +  N+  + +  +     L         ++   +G   + E P    +  +  L  
Sbjct: 522 ----IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGL 577

Query: 233 LNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPE----LPLLLVMLGASDCKRLQFL 288
           L+   N +  L  +     +L  L L    +++ +PE        +  LG S  K L+++
Sbjct: 578 LDCVHNKVRHLE-AFGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNK-LKYI 634

Query: 289 PELTSC-----LEELDAS 301
           P + +      +  +D S
Sbjct: 635 PNIFNAKSVYVMGSVDFS 652

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  104 bits (262), Expect = 8e-25
 Identities = 40/284 (14%), Positives = 81/284 (28%), Gaps = 50/284 (17%)

Query: 31  NLREFPRISGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLR 90
                          +      E   LS   L +L  +E+  C ++ +L   +  L  L+
Sbjct: 459 PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518

Query: 91  SLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGS 150
           SL+++      S  ++               ++   L    +    ++   +     L  
Sbjct: 519 SLNIACN-RGISAAQLK--------------ADWTRLADDEDTGPKIQIFYMGYN-NLEE 562

Query: 151 LPES--LGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLK 208
            P S  L  +  L  L                 NK+  L                   L 
Sbjct: 563 FPASASLQKMVKLGLLD-------------CVHNKVRHL-----------EAFGTNVKLT 598

Query: 209 KLELGDCEIMEIPPDIG-CLSSLESLNLSGNNIESLP--TSISQLSRLRWLYLVNCVKLQ 265
            L+L   +I EIP D       +E L  S N ++ +P   +   +  +  +      K+ 
Sbjct: 599 DLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYN-KIG 657

Query: 266 SLPELPLLLVMLGASDCKRLQFLPELTSC-LEELDASILQALSN 308
           S      +   +          +  L+   +++    +    S 
Sbjct: 658 SEG--RNISCSMDDYKGINASTV-TLSYNEIQKFPTELFATGSP 698

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 98.0 bits (244), Expect = 2e-22
 Identities = 47/317 (14%), Positives = 108/317 (34%), Gaps = 43/317 (13%)

Query: 19  ISSIKIDCYKCVNLREFPRISGNVVELNLMCTPIEEVP--LSIECLPNLETLEMSFCNSL 76
             S          L +       +    +    +EE P   S++ +  L  L+    N +
Sbjct: 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVH-NKV 585

Query: 77  KRLSTSICKLKSLRSLDLSYCINLESFP-EILEKMELLEEINLEEASN-IKELPS--SIE 132
           + L  +      L  L L Y   +E  P +     + +E +    + N +K +P+  + +
Sbjct: 586 RHLE-AFGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGF--SHNKLKYIPNIFNAK 641

Query: 133 NLEGLKQLKLTGCTKLGSLPESLG------NLKSLERL---HAGLLAIPQAPSSIVDLNK 183
           ++  +  +  +   K+GS   ++          +   +   +  +   P         + 
Sbjct: 642 SVYVMGSVDFSYN-KIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFP--TELFATGSP 698

Query: 184 LETL--------SLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGC--LSSLESL 233
           + T+        S+ E               L  ++L   ++  +  D     L  L ++
Sbjct: 699 ISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNM 758

Query: 234 NLSGNNIESLPTSISQLSRLRWLYLVNCVKLQS---LPELPLLLVMLGASDCKRLQFLPE 290
           ++S N   S PT     S+L+   + +    +    L + P  +     + C  L  L +
Sbjct: 759 DVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI-----TTCPSLIQL-Q 812

Query: 291 LTSC-LEELDASILQAL 306
           + S  + ++D  +   L
Sbjct: 813 IGSNDIRKVDEKLTPQL 829

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 88.4 bits (219), Expect = 3e-19
 Identities = 39/247 (15%), Positives = 92/247 (37%), Gaps = 32/247 (12%)

Query: 41  NVVELNLMCTPIEEVP--LSIECLPNLETLEMSFCNSLKRLSTSI------CKLKSLRSL 92
            V  L      ++ +P   + + +  + +++ S+ N +     +I       K  +  ++
Sbjct: 620 QVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSY-NKIGSEGRNISCSMDDYKGINASTV 678

Query: 93  DLSYCINLESFP-EILEKMELLEEINLEE-------ASNIKELPSSIENLEGLKQLKLTG 144
            LSY   ++ FP E+      +  I L          +++K    + +N   L  + L  
Sbjct: 679 TLSYN-EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRF 737

Query: 145 CTKLGSLPESL--GNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGL------- 195
             KL SL +      L  L  +          P+  ++ ++L+   +   R         
Sbjct: 738 N-KLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILR 796

Query: 196 VLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLP--TSISQLSRL 253
             P  ++   SL +L++G  +I ++   +     L  L+++ N   S+   +    +   
Sbjct: 797 QWPTGITTCPSLIQLQIGSNDIRKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAG 854

Query: 254 RWLYLVN 260
            ++ L +
Sbjct: 855 MYVLLYD 861

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 74.1 bits (182), Expect = 1e-14
 Identities = 26/221 (11%), Positives = 62/221 (28%), Gaps = 20/221 (9%)

Query: 49  CTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILE 108
               ++  + ++    +  L ++   +  R+  +I +L  L+ L      +      +  
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTH-SETVSGRLFG 367

Query: 109 KMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGL 168
             EL  +++ E    I       + +                  + L     L+      
Sbjct: 368 DEELTPDMSEERKHRI---RMHYKKM-------------FLDYDQRLNLSDLLQDAINRN 411

Query: 169 LAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLS 228
             +           K   +     R   +   +  L+ L+ +   +         +    
Sbjct: 412 PEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWED 471

Query: 229 SLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPE 269
           +           E+   S S L  L  + L NC  +  LP+
Sbjct: 472 ANSDYA---KQYENEELSWSNLKDLTDVELYNCPNMTQLPD 509

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 63.4 bits (154), Expect = 4e-11
 Identities = 29/181 (16%), Positives = 59/181 (32%), Gaps = 11/181 (6%)

Query: 127 LPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLH---------AGLLAIPQAPSS 177
               ++N   +  L L G    G +P+++G L  L+ L            L    +    
Sbjct: 315 PGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPD 374

Query: 178 IVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSG 237
           + +  K      ++   L     L+    L+     + E+  I  D         +    
Sbjct: 375 MSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLT 434

Query: 238 NNIESLPTSISQLSRLRWLYLVNCVKLQSLPELPLLLVMLGASDCKRLQFLPELTSCLEE 297
           N I  +  +I +L++L+ +Y  N                  +   K+ +      S L++
Sbjct: 435 NRITFISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDAN-SDYAKQYENEELSWSNLKD 492

Query: 298 L 298
           L
Sbjct: 493 L 493

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  111 bits (278), Expect = 6e-27
 Identities = 56/252 (22%), Positives = 89/252 (35%), Gaps = 37/252 (14%)

Query: 31  NLREFPRISGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKL---- 86
           NL   P +   +  L +    +  +P+    L  L          L  L + +CKL    
Sbjct: 72  NLTSLPALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPL-THLPALPSGLCKLWIFG 130

Query: 87  ----------KSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEG 136
                       L+ L +S    L S P +  ++  L   N      +  LP        
Sbjct: 131 NQLTSLPVLPPGLQELSVSDN-QLASLPALPSELCKLWAYNN----QLTSLPMLPSG--- 182

Query: 137 LKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLV 196
           L++L ++   +L SLP     L  L   +  L ++P  PS       L+ L +   R   
Sbjct: 183 LQELSVSDN-QLASLPTLPSELYKLWAYNNRLTSLPALPSG------LKELIVSGNRLTS 235

Query: 197 LPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWL 256
           LP L    S LK+L +    +  +P        L SL++  N +  LP S+  LS    +
Sbjct: 236 LPVL---PSELKELMVSGNRLTSLPMLPS---GLLSLSVYRNQLTRLPESLIHLSSETTV 289

Query: 257 YLVNCVKLQSLP 268
            L     L    
Sbjct: 290 NLEGN-PLSERT 300

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 86.5 bits (214), Expect = 1e-18
 Identities = 53/200 (26%), Positives = 80/200 (40%), Gaps = 23/200 (11%)

Query: 113 LEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIP 172
              +N+ E S +  LP  +     +  L +     L SLP     L++LE     L ++P
Sbjct: 42  NAVLNVGE-SGLTTLPDCL--PAHITTLVIPDN-NLTSLPALPPELRTLEVSGNQLTSLP 97

Query: 173 QAPSSIVDLNKL-----------ETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIP 221
             P  +++L+               L      G  L  L      L++L + D ++  +P
Sbjct: 98  VLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLP 157

Query: 222 PDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPELPLLLVMLGASD 281
                   L  L    N + SLP   S    L+ L + +  +L SLP LP  L  L A +
Sbjct: 158 ALPS---ELCKLWAYNNQLTSLPMLPSG---LQELSVSDN-QLASLPTLPSELYKLWAYN 210

Query: 282 CKRLQFLPELTSCLEELDAS 301
             RL  LP L S L+EL  S
Sbjct: 211 N-RLTSLPALPSGLKELIVS 229

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 66.8 bits (163), Expect = 3e-12
 Identities = 37/158 (23%), Positives = 62/158 (39%), Gaps = 21/158 (13%)

Query: 158 LKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEI 217
                 L+ G   +   P  +     + TL + +     LP L      L+ LE+   ++
Sbjct: 39  NNGNAVLNVGESGLTTLPDCL--PAHITTLVIPDNNLTSLPALPP---ELRTLEVSGNQL 93

Query: 218 MEIPPDIGCLSSLESLNLSGNNIESLPTSISQL--------------SRLRWLYLVNCVK 263
             +P     L  L   +    ++ +LP+ + +L                L+ L + +  +
Sbjct: 94  TSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDN-Q 152

Query: 264 LQSLPELPLLLVMLGASDCKRLQFLPELTSCLEELDAS 301
           L SLP LP  L  L A +  +L  LP L S L+EL  S
Sbjct: 153 LASLPALPSELCKLWAYNN-QLTSLPMLPSGLQELSVS 189

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  100 bits (251), Expect = 1e-23
 Identities = 64/285 (22%), Positives = 112/285 (39%), Gaps = 38/285 (13%)

Query: 31  NLREFPRISGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLR 90
           +L++ P +  ++  +      +EE+P  ++ LP L  +     NSLK+L        SL 
Sbjct: 164 SLKKLPDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYAD-NNSLKKLPDLPL---SLE 218

Query: 91  SLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGS 150
           S+       LE  PE+ + +  L  I  +  + +K LP    +LE L          L  
Sbjct: 219 SIVAGNN-ILEELPEL-QNLPFLTTIYADN-NLLKTLPDLPPSLEALNVRDN----YLTD 271

Query: 151 LPESLGNLKSLERLHAGLLAIPQAPSSIVDLN--------------KLETLSLFECRGLV 196
           LPE   +L  L+        + + P ++  LN               LE L++   + + 
Sbjct: 272 LPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE 331

Query: 197 LPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWL 256
           LP L      L++L      + E+P       +L+ L++  N +   P     +  LR  
Sbjct: 332 LPALPP---RLERLIASFNHLAEVPELPQ---NLKQLHVEYNPLREFPDIPESVEDLR-- 383

Query: 257 YLVNCVKLQSLPELPLLLVMLGASDCKRLQFLPELTSCLEELDAS 301
                  L  +PELP  L  L       L+  P++   +E+L  +
Sbjct: 384 ---MNSHLAEVPELPQNLKQLHVETN-PLREFPDIPESVEDLRMN 424

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 97.0 bits (242), Expect = 2e-22
 Identities = 68/271 (25%), Positives = 112/271 (41%), Gaps = 27/271 (9%)

Query: 31  NLREFPRISGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLR 90
            L   P +  ++  L   C  + E+P   + L +L     +   +L  L         L 
Sbjct: 82  GLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNL-KALSDL------PPLLE 134

Query: 91  SLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGS 150
            L +S    LE  PE+ +    L+ I+++  +++K+LP    +LE +      G  +L  
Sbjct: 135 YLGVSNN-QLEKLPEL-QNSSFLKIIDVDN-NSLKKLPDLPPSLEFIA----AGNNQLEE 187

Query: 151 LPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKL 210
           LPE L NL  L  ++A   ++ + P   +    LE++       L   P L  L  L  +
Sbjct: 188 LPE-LQNLPFLTAIYADNNSLKKLPDLPL---SLESIVAGNNI-LEELPELQNLPFLTTI 242

Query: 211 ELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPEL 270
              +  +  +P       SLE+LN+  N +  LP     L+ L             L EL
Sbjct: 243 YADNNLLKTLPDLPP---SLEALNVRDNYLTDLPELPQSLTFLDVSEN----IFSGLSEL 295

Query: 271 PLLLVMLGASDCKRLQFLPELTSCLEELDAS 301
           P  L  L AS  + ++ L +L   LEEL+ S
Sbjct: 296 PPNLYYLNASSNE-IRSLCDLPPSLEELNVS 325

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 95.8 bits (239), Expect = 5e-22
 Identities = 62/290 (21%), Positives = 102/290 (35%), Gaps = 45/290 (15%)

Query: 44  ELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSI-------------CKLKSLR 90
           E     + + E+P+  E + +      ++    +                   C  +   
Sbjct: 15  EPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAH 74

Query: 91  SLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGS 150
            L+L+    L S PE+      LE +     +++ ELP   ++L+ L          L  
Sbjct: 75  ELELNNL-GLSSLPELPPH---LESLVASC-NSLTELPELPQSLKSLLVDNN-NLKALSD 128

Query: 151 LPESL----------------GNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRG 194
           LP  L                 N   L+ +     ++ + P        LE ++    + 
Sbjct: 129 LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPP---SLEFIAAGNNQ- 184

Query: 195 LVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLR 254
           L   P L  L  L  +   +  + ++P       SLES+    N +E LP  +  L  L 
Sbjct: 185 LEELPELQNLPFLTAIYADNNSLKKLPDLPL---SLESIVAGNNILEELP-ELQNLPFLT 240

Query: 255 WLYLVNCVKLQSLPELPLLLVMLGASDCKRLQFLPELTSCLEELDASILQ 304
            +Y  N   L++LP+LP  L  L   D   L  LPEL   L  LD S   
Sbjct: 241 TIYADNN-LLKTLPDLPPSLEALNVRDN-YLTDLPELPQSLTFLDVSENI 288

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 72.3 bits (178), Expect = 4e-14
 Identities = 48/231 (20%), Positives = 85/231 (36%), Gaps = 30/231 (12%)

Query: 31  NLREFPRISGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLR 90
            L+  P +  ++  LN+    + ++P   + L  L+  E    N    LS       +L 
Sbjct: 248 LLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSE----NIFSGLSELP---PNLY 300

Query: 91  SLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGS 150
            L+ S    + S  ++      LEE+N+   + + ELP+    LE   +L  +    L  
Sbjct: 301 YLNASSN-EIRSLCDLPPS---LEELNVSN-NKLIELPALPPRLE---RLIASFN-HLAE 351

Query: 151 LPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKL 210
           +PE   NLK L   +  L   P  P S+ DL               L  +     +LK+L
Sbjct: 352 VPELPQNLKQLHVEYNPLREFPDIPESVEDLRM----------NSHLAEVPELPQNLKQL 401

Query: 211 ELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQ-LSRLRWLYLVN 260
            +    + E P       S+E L ++   +        +   +L      +
Sbjct: 402 HVETNPLREFPDIPE---SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEH 449

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 70.8 bits (174), Expect = 1e-13
 Identities = 44/216 (20%), Positives = 72/216 (33%), Gaps = 35/216 (16%)

Query: 104 PEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLER 163
           P  +    L E   L  +SN+ E+P   EN++   +          + P   G  + +  
Sbjct: 5   PRNVSNTFLQE--PLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 164 LHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPD 223
                              +   L L       LP L      L+ L      + E+P  
Sbjct: 63  SRL----------RDCLDRQAHELELNNLGLSSLPELPP---HLESLVASCNSLTELPEL 109

Query: 224 IGCLSSLESLNLSGNNIESLPTS----------------ISQLSRLRWLYLVNCVKLQSL 267
              L SL   N +   +  LP                  +   S L+ + + N   L+ L
Sbjct: 110 PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNN-SLKKL 168

Query: 268 PELPLLLVMLGASDCKRLQFLPELTSC--LEELDAS 301
           P+LP  L  + A + + L+ LPEL +   L  + A 
Sbjct: 169 PDLPPSLEFIAAGNNQ-LEELPELQNLPFLTAIYAD 203

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 10/108 (9%)

Query: 195 LVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIE-SLPTSISQLSRL 253
           + + P     + L++       + E+P +   + S      + +  E + P    +   +
Sbjct: 1   MFINPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 254 RWLYLVNCVKLQSLPELPLLLVMLGASDCKRLQFLPELTSCLEELDAS 301
               L +C   +   EL L        +   L  LPEL   LE L AS
Sbjct: 61  AVSRLRDC-LDRQAHELEL--------NNLGLSSLPELPPHLESLVAS 99

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 95.1 bits (237), Expect = 2e-22
 Identities = 45/296 (15%), Positives = 103/296 (34%), Gaps = 36/296 (12%)

Query: 32  LREFPRISGNVVELNLMCTPIEEVPLSI-ECLPNLETLEMSFCNSLKRLST-SICKLKSL 89
           + E  +         +  + +++   S+ +   N++ L++S  N L ++S   +     L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSG-NPLSQISAADLAPFTKL 60

Query: 90  RSLDLSYCINLESFPEI-----LEKMEL-------------LEEINLEEASNIKELPSSI 131
             L+LS    L    ++     L  ++L             +E ++    +NI  +  S 
Sbjct: 61  ELLNLSSN-VLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAAN-NNISRVSCSR 118

Query: 132 ENLEGLKQLKLTGCTKLGSLPE-SLGNLKSLERLHAG---LLAIPQAPSSIVDLNKLETL 187
              +G K + L    K+  L +   G    ++ L      +  +          + LE L
Sbjct: 119 --GQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVN-FAELAASSDTLEHL 174

Query: 188 SLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSI 247
           +L       +   +   + LK L+L   ++  + P+    + +  ++L  N +  +  ++
Sbjct: 175 NLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKAL 233

Query: 248 SQLSRLRWLYL----VNCVKLQSLPELPLLLVMLGASDCKRLQFLPELTSCLEELD 299
                L    L     +C  L+        +  +     K+L    E    +  L 
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 62.7 bits (153), Expect = 3e-11
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 12/160 (7%)

Query: 102 SFPEILEKMELLEEINLEEASNIKELPSSI-ENLEGLKQLKLTGCTKLGSLP-ESLGNLK 159
           +  EI +     +   + + S++K+  +S+ ++   +K+L L+G   L  +    L    
Sbjct: 1   AIHEIKQNGNRYKIEKVTD-SSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFT 58

Query: 160 SLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIME 219
            LE L+     + +    +  L+ L TL L       L        S++ L   +  I  
Sbjct: 59  KLELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISR 113

Query: 220 IPPDIGCLSSLESLNLSGNNIESLP-TSISQLSRLRWLYL 258
           +          +++ L+ N I  L        SR+++L L
Sbjct: 114 VSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 55.4 bits (134), Expect = 9e-09
 Identities = 21/109 (19%), Positives = 46/109 (42%), Gaps = 7/109 (6%)

Query: 197 LPPLLSGLSSLKKLELGDCEIMEIPPDIG-CLSSLESLNLSGNNIESLPT-SISQLSRLR 254
           +  +    +  K  ++ D  + +    +     +++ L+LSGN +  +    ++  ++L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 255 WLYLVNCVKLQSLPELPLL--LVMLGASDCKRLQFLPELTSCLEELDAS 301
            L L +   L    +L  L  L  L  ++   +Q L    S +E L A+
Sbjct: 62  LLNLSSN-VLYETLDLESLSTLRTLDLNNN-YVQELLVGPS-IETLHAA 107

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 90.3 bits (225), Expect = 1e-20
 Identities = 56/232 (24%), Positives = 107/232 (46%), Gaps = 13/232 (5%)

Query: 41  NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINL 100
            +  L +    I ++  +++ L NL  L ++  +++  +S  +  L  + SL+L    + 
Sbjct: 89  KLTNLYIGTNKITDIS-ALQNLTNLRELYLNE-DNISDIS-PLANLTKMYSLNLGAN-HN 144

Query: 101 ESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKS 160
            S    L  M  L  + + E S +K++   I NL  L  L L    ++  +   L +L S
Sbjct: 145 LSDLSPLSNMTGLNYLTVTE-SKVKDVTP-IANLTDLYSLSL-NYNQIEDI-SPLASLTS 200

Query: 161 LERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEI 220
           L    A +  I    + + ++ +L +L +   +   L PL + LS L  LE+G  +I +I
Sbjct: 201 LHYFTAYVNQI-TDITPVANMTRLNSLKIGNNKITDLSPL-ANLSQLTWLEIGTNQISDI 258

Query: 221 PPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPELPL 272
              +  L+ L+ LN+  N I  +   ++ LS+L  L+L N  +L +     +
Sbjct: 259 NA-VKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNN-QLGNEDMEVI 307

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 77.2 bits (191), Expect = 5e-16
 Identities = 44/225 (19%), Positives = 85/225 (37%), Gaps = 15/225 (6%)

Query: 81  TSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQL 140
                L       L       +     E++E + ++ +     +  +   IE L  L+ L
Sbjct: 16  FPDADLAEGIRAVLQK--ASVTDVVTQEELESITKLVVAG-EKVASIQG-IEYLTNLEYL 71

Query: 141 KLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPL 200
            L G  ++  +   L NL  L  L+ G   I    S++ +L  L  L L E     + PL
Sbjct: 72  NLNGN-QITDISP-LSNLVKLTNLYIGTNKI-TDISALQNLTNLRELYLNEDNISDISPL 128

Query: 201 LSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVN 260
            + L+ +  L LG    +     +  ++ L  L ++ + ++ +   I+ L+ L  L L  
Sbjct: 129 -ANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT-PIANLTDLYSLSLNY 186

Query: 261 CVKLQSLPELPLL--LVMLGASDCK--RLQFLPELTSCLEELDAS 301
             +++ +  L  L  L    A   +   +  +  +T  L  L   
Sbjct: 187 N-QIEDISPLASLTSLHYFTAYVNQITDITPVANMTR-LNSLKIG 229

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 68.0 bits (167), Expect = 6e-13
 Identities = 42/202 (20%), Positives = 90/202 (44%), Gaps = 12/202 (5%)

Query: 41  NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINL 100
            +  L +  + +++V   I  L +L +L +++ N ++ +S  +  L SL          +
Sbjct: 156 GLNYLTVTESKVKDVT-PIANLTDLYSLSLNY-NQIEDIS-PLASLTSLHYFTAYVN-QI 211

Query: 101 ESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKS 160
                 +  M  L  + +     I +L   + NL  L  L++    ++  +  ++ +L  
Sbjct: 212 TDITP-VANMTRLNSLKIGNN-KITDLSP-LANLSQLTWLEIGT-NQISDIN-AVKDLTK 266

Query: 161 LERLHAGLLAIPQAPSSIVDLNKLETLSLFECR-GLVLPPLLSGLSSLKKLELGDCEIME 219
           L+ L+ G   I    S + +L++L +L L   + G     ++ GL++L  L L    I +
Sbjct: 267 LKMLNVGSNQI-SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325

Query: 220 IPPDIGCLSSLESLNLSGNNIE 241
           I P +  LS ++S + +   I+
Sbjct: 326 IRP-LASLSKMDSADFANQVIK 346

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 90.0 bits (223), Expect = 6e-20
 Identities = 46/232 (19%), Positives = 80/232 (34%), Gaps = 25/232 (10%)

Query: 41  NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINL 100
              EL L    +  +P ++   P +  LE++  N+L  L        SL  LD      L
Sbjct: 60  QFSELQLNRLNLSSLPDNL--PPQITVLEIT-QNALISLPELPA---SLEYLDACDN-RL 112

Query: 101 ESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKS 160
            + PE+      L+ ++++    +  LP     LE    +      +L  LPE   +L+ 
Sbjct: 113 STLPELPAS---LKHLDVDNN-QLTMLPELPALLE---YINADN-NQLTMLPELPTSLEV 164

Query: 161 LERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKK----LELGDCE 216
           L   +  L  +P+ P S      LE L +       LP +       ++        +  
Sbjct: 165 LSVRNNQLTFLPELPES------LEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENR 218

Query: 217 IMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLP 268
           I  IP +I  L    ++ L  N + S           +  Y    +      
Sbjct: 219 ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSD 270

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 89.1 bits (221), Expect = 1e-19
 Identities = 47/323 (14%), Positives = 106/323 (32%), Gaps = 47/323 (14%)

Query: 32  LREFPRISGNVVELNLMCTPIEEVPLSI-ECLPNLETLEMSFCNSLKRLST-SICKLKSL 89
           + E  +         +  + +++   S+ +   N++ L++S  N L ++S   +     L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSG-NPLSQISAADLAPFTKL 60

Query: 90  RSLDLSYCINLESFPEI-----LEKMEL-------------LEEINLEEASNIKELPSSI 131
             L+LS    L    ++     L  ++L             +E ++    +NI  +  S 
Sbjct: 61  ELLNLSSN-VLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAAN-NNISRVSCSR 118

Query: 132 ENLEGLKQLKLTGCTKLGSLPE-SLGNLKSLERLHAG---LLAIPQAPSSIVDLNKLETL 187
              +G K + L    K+  L +   G    ++ L      +  +          + LE L
Sbjct: 119 --GQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVN-FAELAASSDTLEHL 174

Query: 188 SLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSI 247
           +L       +   +   + LK L+L   ++  + P+    + +  ++L  N +  +  ++
Sbjct: 175 NLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKAL 233

Query: 248 SQLSRLRWLYLV-NCVKLQSLPELPLLLVML--------------GASDCKRLQFLPELT 292
                L    L  N     +L +       +                 +C          
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA 293

Query: 293 SCLEELDASILQALSNRTGERLS 315
            C E+L A     L     +  +
Sbjct: 294 YCCEDLPAPFADRLIALKRKEHA 316

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 69.1 bits (169), Expect = 5e-13
 Identities = 35/285 (12%), Positives = 86/285 (30%), Gaps = 13/285 (4%)

Query: 41  NVVELNLMCTPIEEVPLS--IECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCI 98
            V  L+L    I+ V  +        LE L + + N +  +   +     L++LDLS   
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY-NFIYDVKGQVV-FAKLKTLDLSSN- 201

Query: 99  NLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCT-KLGSLPESLGN 157
            L       +    +  I+L   + +  +  ++   + L+   L G     G+L +    
Sbjct: 202 KLAFMGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260

Query: 158 LKSLERL-HAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPL----LSGLSSLKKLEL 212
            + ++ +    +  +         +  L     + C  L  P               L  
Sbjct: 261 NQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSG 320

Query: 213 GDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSI-SQLSRLRWLYLVNCVKLQSLPELP 271
              E   +  +    +    ++       ++   +  +      L        + +    
Sbjct: 321 QGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGR 380

Query: 272 LLLVMLGASDCKRLQFLPELTSCLEELDASILQALSNRTGERLSK 316
                L  +  + +  +    +  E+    +L+A+  R  E   +
Sbjct: 381 RAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVE 425

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 54.1 bits (130), Expect = 4e-08
 Identities = 19/111 (17%), Positives = 42/111 (37%), Gaps = 7/111 (6%)

Query: 150 SLPESLGNLKSLERLHAGLLAIPQAPSSI-VDLNKLETLSLFECRGLVLPP-LLSGLSSL 207
           ++ E   N    +       ++ QA +S+      ++ L L       +    L+  + L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 208 KKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYL 258
           + L L    + E    +  LS+L +L+L+ N +      +     +  L+ 
Sbjct: 61  ELLNLSSNVLYETLD-LESLSTLRTLDLNNNYV----QELLVGPSIETLHA 106

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 87.5 bits (216), Expect = 5e-19
 Identities = 68/325 (20%), Positives = 121/325 (37%), Gaps = 56/325 (17%)

Query: 44  ELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESF 103
           E   + TPI+++    +         +    S+    T   +L S+  +  +        
Sbjct: 3   ETITVSTPIKQIF-PDDAFAETIKDNLKK-KSVTDAVT-QNELNSIDQIIANNS------ 53

Query: 104 PEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLER 163
                              +IK +   I+ L  + +L L G  KL  + + L NLK+L  
Sbjct: 54  -------------------DIKSV-QGIQYLPNVTKLFLNG-NKLTDI-KPLTNLKNLGW 91

Query: 164 LHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPD 223
           L      I    SS+ DL KL++LSL       +  L   L  L+ L LG+ +I +I   
Sbjct: 92  LFLDENKIKDL-SSLKDLKKLKSLSLEHNGISDINGL-VHLPQLESLYLGNNKITDITV- 148

Query: 224 IGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPELPLLLVMLGASDCK 283
           +  L+ L++L+L  N I  +   ++ L++L+ LYL     +  L  L  L          
Sbjct: 149 LSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKN-HISDLRALAGL---------- 196

Query: 284 RLQFLPELTSCLEELDASILQALSNRTGERLSKHMSPVQLIFANCLKLNESIWADLQKRI 343
                      L+ L+    Q   N+     S  + P  +   +   +   I +D     
Sbjct: 197 ---------KNLDVLELFS-QECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYE 246

Query: 344 RHMIIASLRLFYEKVCNSIYFPLSL 368
           +  +   L  F  +V    Y P+++
Sbjct: 247 KPNVKWHLPEFTNEVSFIFYQPVTI 271

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 87.7 bits (218), Expect = 5e-19
 Identities = 47/209 (22%), Positives = 76/209 (36%), Gaps = 21/209 (10%)

Query: 56  PLSIECLPNLETLEMSFCNSLKRL--STSICKLKSLRSLDLSYCINLESFPEILEKMELL 113
             +   L +LE L++   N + +         L+++  + LSY   L+        +  L
Sbjct: 398 SDAFSWLGHLEVLDLGL-NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSL 456

Query: 114 EEINLEEA--SNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAI 171
           + + L      N+   PS  + L  L  L L+         + L  L+ LE L       
Sbjct: 457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILD------ 510

Query: 172 PQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPD-IGCLSSL 230
                  +  N L  L      G      L GLS L  L L      EIP +    L  L
Sbjct: 511 -------LQHNNLARLWKHANPGG-PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 562

Query: 231 ESLNLSGNNIESL-PTSISQLSRLRWLYL 258
           + ++L  NN+ +L  +  +    L+ L L
Sbjct: 563 KIIDLGLNNLNTLPASVFNNQVSLKSLNL 591

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 83.9 bits (208), Expect = 7e-18
 Identities = 53/327 (16%), Positives = 122/327 (37%), Gaps = 27/327 (8%)

Query: 31  NLREFPR-ISGNVVELNLMCTPIEEV-PLSIECLPNLETLEMSFCNSLKRL-STSICKLK 87
            L + P  +  N+  LNL    +  +   +      L +L++   N++ +L      KL 
Sbjct: 15  KLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG-FNTISKLEPELCQKLP 73

Query: 88  SLRSLDLSYCINLESFPE-ILEKMELLEEINLEEASNIKEL-PSSIENLEGLKQLKLTGC 145
            L+ L+L +   L    +        L E++L   ++I+++  +     + L  L L+  
Sbjct: 74  MLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMS-NSIQKIKNNPFVKQKNLITLDLSHN 131

Query: 146 TKLGSLPESLGNLKSLERLHAG---LLAIPQAPSSIVDLNKLETLSLFECR-GLVLPPLL 201
               +   +   L++L+ L      + A+      I   + L+ L L   +     P   
Sbjct: 132 GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF 191

Query: 202 SGLSSLKKLELGDCEIMEIPPDIGC----LSSLESLNLSGNNIESLPTSI---SQLSRLR 254
             +  L  L L + ++     +  C     +S+ +L+LS + + +   +     + + L 
Sbjct: 192 HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLT 251

Query: 255 WLYLVNCVKLQSLPELPLLLVMLGASDCKRLQFLPELTSCLEELDASILQALSNRTGERL 314
            L L     L  +            +   +L++     + ++ L +  L  L N     L
Sbjct: 252 MLDLSYN-NLNVVGNDSF-------AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 303

Query: 315 SKHMSPVQLIFANCLKLNESIWADLQK 341
            +  +   +  A+  K+++  +  L+ 
Sbjct: 304 KRSFTKQSISLASLPKIDDFSFQWLKC 330

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 82.7 bits (205), Expect = 2e-17
 Identities = 56/279 (20%), Positives = 102/279 (36%), Gaps = 33/279 (11%)

Query: 41  NVVELNLMCTPIEEV-PLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCIN 99
           N+  L+L    +  V   S   LP LE   + + N     S S+  L ++R L+L     
Sbjct: 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS-- 306

Query: 100 LESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLK 159
                          + ++  AS  K    S + L+ L+ L +      G        L 
Sbjct: 307 -------------FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI 353

Query: 160 SLERLH-----AGLLAIPQAPSSIVDLNKLETLSLFECR-GLVLPPLLSGLSSLKKLELG 213
           +L+ L        L  +       +  + L  L+L + +   +     S L  L+ L+LG
Sbjct: 354 NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG 413

Query: 214 DCEIMEIPPD--IGCLSSLESLNLSGNNIESL-PTSISQLSRLRWLYLVNCVKLQSLPEL 270
             EI +         L ++  + LS N    L   S + +  L+ L L     L+++   
Sbjct: 414 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV-ALKNVDSS 472

Query: 271 PLLLVMLGASDCKRLQFLPELTSC-LEELDASILQALSN 308
           P     L     + L  L +L++  +  ++  +L+ L  
Sbjct: 473 PSPFQPL-----RNLTIL-DLSNNNIANINDDMLEGLEK 505

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 77.7 bits (192), Expect = 8e-16
 Identities = 54/291 (18%), Positives = 99/291 (34%), Gaps = 25/291 (8%)

Query: 41  NVVELNLMCTPIEEV-PLSIECLPNLETLEMS--------FCNSLKRL-STSICKLKSLR 90
            +    L    I+ +   S+  L N+  L +            SL ++   S   LK L 
Sbjct: 273 QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE 332

Query: 91  SLDLSYCINLESFPEILEKMELLEEINLEE-ASNIKELPSSI---ENLEGLKQLKLTGCT 146
            L++           +   +  L+ ++L    ++++ L +          L  L LT   
Sbjct: 333 HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK 392

Query: 147 KLGSLPESLGNLKSLERLHAG--LLAIPQAPSSIVDLNKLETLSLFECRGLVLPP-LLSG 203
                 ++   L  LE L  G   +           L  +  + L   + L L     + 
Sbjct: 393 ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL 452

Query: 204 LSSLKKLELGDCEIMEI---PPDIGCLSSLESLNLSGNNIESLPTS-ISQLSRLRWLYLV 259
           + SL++L L    +  +   P     L +L  L+LS NNI ++    +  L +L  L L 
Sbjct: 453 VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQ 512

Query: 260 NCVKLQSLPELPLLLVMLGA-SDCKRLQFLPELTSC-LEELDASILQALSN 308
           +   L  L +       +        L  L  L S   +E+   + + L  
Sbjct: 513 HN-NLARLWKHANPGGPIYFLKGLSHLHIL-NLESNGFDEIPVEVFKDLFE 561

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 77.0 bits (190), Expect = 1e-15
 Identities = 36/207 (17%), Positives = 64/207 (30%), Gaps = 37/207 (17%)

Query: 60  ECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLE 119
           +C  + E  + S    L ++   +    ++  L+L++   L   P               
Sbjct: 1   KCTVSHEVADCSH-LKLTQVPDDL--PTNITVLNLTHN-QLRRLP--------------- 41

Query: 120 EASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAG---LLAIPQAPS 176
                    ++      L  L +   T     PE    L  L+ L+     L  +     
Sbjct: 42  --------AANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS--DK 91

Query: 177 SIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIMEIPPD-IGCLSSLESLN 234
           +      L  L L       +         +L  L+L    +          L +L+ L 
Sbjct: 92  TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELL 151

Query: 235 LSGNNIESLPT---SISQLSRLRWLYL 258
           LS N I++L +    I   S L+ L L
Sbjct: 152 LSNNKIQALKSEELDIFANSSLKKLEL 178

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 67.3 bits (165), Expect = 2e-12
 Identities = 48/222 (21%), Positives = 80/222 (36%), Gaps = 22/222 (9%)

Query: 56  PLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYC--INLESFPEILEKMELL 113
                 L N+  + +S+   L+    S   + SL+ L L      N++S P   + +  L
Sbjct: 423 GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482

Query: 114 EEINLEEASNIKELPSS-IENLEGLKQLKLTGC--------TKLGSLPESLGNLKSLERL 164
             ++L   +NI  +    +E LE L+ L L              G     L  L  L  L
Sbjct: 483 TILDLSN-NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541

Query: 165 ---HAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIMEI 220
                G   IP       DL +L+ + L       LP  + +   SLK L L    I  +
Sbjct: 542 NLESNGFDEIP--VEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV 599

Query: 221 PPDI--GCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVN 260
              +      +L  L++  N  +    SI+    + W+   +
Sbjct: 600 EKKVFGPAFRNLTELDMRFNPFDCTCESIAWF--VNWINETH 639

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 85.1 bits (211), Expect = 6e-19
 Identities = 55/226 (24%), Positives = 90/226 (39%), Gaps = 16/226 (7%)

Query: 54  EVPLSIECLPNLETLEMSFCNSLKRLSTSI-CKLKSLRSLDLSYCI--NLESFPEILEKM 110
            VP  I    +   LE+   N L+ L   +  KL  L  L LS           +     
Sbjct: 21  SVPTGI--PSSATRLELES-NKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT 77

Query: 111 ELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPES--LGNLKSLERLHAGL 168
             L+ ++L   + +  + S+   LE L+ L       L  + E     +L++L  L    
Sbjct: 78  TSLKYLDLSF-NGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISH 135

Query: 169 LAIPQAPSSI-VDLNKLETLSLFECRGL--VLPPLLSGLSSLKKLELGDCEIMEIPPDI- 224
                A + I   L+ LE L +         LP + + L +L  L+L  C++ ++ P   
Sbjct: 136 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 195

Query: 225 GCLSSLESLNLSGNNIESLPTSI-SQLSRLRWLYLVNCVKLQSLPE 269
             LSSL+ LN+S NN  SL T     L+ L+ L       + +  +
Sbjct: 196 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKK 240

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 79.7 bits (197), Expect = 5e-17
 Identities = 61/251 (24%), Positives = 96/251 (38%), Gaps = 23/251 (9%)

Query: 24  IDCYKCVNLREFPR-ISGNVVELNLMCTPIEEVPLSI-ECLPNLETLEMSFCNSLKRLS- 80
           I C     L   P  I  +   L L    ++ +P  + + L  L  L +S  N L     
Sbjct: 12  IRCNSK-GLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSS-NGLSFKGC 69

Query: 81  --TSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSS--IENLEG 136
              S     SL+ LDLS+   + +       +E LE ++ +  SN+K++       +L  
Sbjct: 70  CSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQH-SNLKQMSEFSVFLSLRN 127

Query: 137 LKQLKLTGCTKLGSLPE-SLGNLKSLERLH----AGLLAIPQAPSSIVDLNKLETLSLFE 191
           L  L ++               L SLE L     +        P    +L  L  L L +
Sbjct: 128 LIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFL--PDIFTELRNLTFLDLSQ 184

Query: 192 CRGLVLPP-LLSGLSSLKKLELGDCEIMEIPPDI-GCLSSLESLNLSGNNIESLPTSISQ 249
           C+   L P   + LSSL+ L +       +      CL+SL+ L+ S N+I +      Q
Sbjct: 185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244

Query: 250 --LSRLRWLYL 258
              S L +L L
Sbjct: 245 HFPSSLAFLNL 255

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 55.4 bits (134), Expect = 7e-09
 Identities = 28/150 (18%), Positives = 51/150 (34%), Gaps = 27/150 (18%)

Query: 123 NIKELPSSIENLEGLKQLKLTGCTKLGSLPES-LGNLKSLERLHAGLLAIPQAPSSIVDL 181
            +  +P+ I       +L+L    KL SLP      L  L +L              +  
Sbjct: 18  GLTSVPTGI--PSSATRLELES-NKLQSLPHGVFDKLTQLTKLS-------------LSS 61

Query: 182 NKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIE 241
           N L                  G +SLK L+L    ++ +  +   L  LE L+   +N++
Sbjct: 62  NGLSFKGC-------CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 114

Query: 242 SLP--TSISQLSRLRWLYLVNCVKLQSLPE 269
            +   +    L  L +L + +    +    
Sbjct: 115 QMSEFSVFLSLRNLIYLDISHT-HTRVAFN 143

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 87.0 bits (216), Expect = 7e-19
 Identities = 45/240 (18%), Positives = 84/240 (35%), Gaps = 13/240 (5%)

Query: 41  NVVELNLMCTPIEEV-PLSIECLPNLETLEMSFCNSLKRLS-TSICKLKSLRSLDLSYCI 98
            +  L  + T I  +  + +     LE+L +   N +  +        + L+ LD     
Sbjct: 106 ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGS-NHISSIKLPKGFPTEKLKVLDFQNN- 163

Query: 99  NLESF-PEILEKMELLEEINLEEASN-IKELPSSIENLEGLKQLKLTGCTKLGSLPESLG 156
            +     E +  ++    ++L    N I  +     +    + L   G   L  + + L 
Sbjct: 164 AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLK 223

Query: 157 N-----LKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKL 210
           N     L            I  A    +    +E+++L +     +        S L++L
Sbjct: 224 NSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQEL 283

Query: 211 ELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLP-TSISQLSRLRWLYLVNCVKLQSLPE 269
           +L    + E+P  +  LS+L+ L LS N  E+L   S S    L  L +    K   L  
Sbjct: 284 DLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT 343

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 78.9 bits (195), Expect = 4e-16
 Identities = 51/216 (23%), Positives = 89/216 (41%), Gaps = 11/216 (5%)

Query: 53  EEVPLSIECLPNLETLEMSFCN--SLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKM 110
           E     +E L NL  L++S  +  +    +  +  L  L+SL+LSY   L    E  ++ 
Sbjct: 340 ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC 399

Query: 111 ELLEEINLEEASNIKEL--PSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAG- 167
             LE ++L   + +K     S  +NL  LK L L+      S  +    L +L+ L+   
Sbjct: 400 PQLELLDLAF-TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG 458

Query: 168 ---LLAIPQAPSSIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIMEIPPD 223
                   Q  +S+  L +LE L L  C    +     + L  +  ++L    +     +
Sbjct: 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE 518

Query: 224 IGCLSSLESLNLSGNNIESL-PTSISQLSRLRWLYL 258
                    LNL+ N+I  + P+ +  LS+ R + L
Sbjct: 519 ALSHLKGIYLNLASNHISIILPSLLPILSQQRTINL 554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 52/269 (19%), Positives = 99/269 (36%), Gaps = 37/269 (13%)

Query: 52  IEEVPLSIECLPNLETLEMSFCNSLKRL-STSICKLKSLRSLDLSYCINLESFPEILEKM 110
           + E+P ++    + E LE SF N L  + +T+  +L +L  LDL+ C       +  +  
Sbjct: 24  LNEIPGTL--PNSTECLEFSF-NVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQ 80

Query: 111 ELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPE-SLGNLKSLERLHAGLL 169
             L+ + L     I    +++   + LK L       + S+    L N K+LE L+    
Sbjct: 81  HRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLY---- 135

Query: 170 AIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPP-DIGCLS 228
                    +  N + ++           P       LK L+  +  I  +   D+  L 
Sbjct: 136 ---------LGSNHISSIK---------LPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ 177

Query: 229 SLE--SLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPELPLLLVMLGASDCKRLQ 286
                SLNL+GN+I  +       +  + L       L  + +       L  S  + L 
Sbjct: 178 QATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFK------GLKNSTIQSLW 231

Query: 287 FLPELTSCLEELDASILQALSNRTGERLS 315
                    E++  ++ + L   + E ++
Sbjct: 232 LGTFEDMDDEDISPAVFEGLCEMSVESIN 260

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 84.2 bits (209), Expect = 4e-18
 Identities = 58/265 (21%), Positives = 111/265 (41%), Gaps = 20/265 (7%)

Query: 41  NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINL 100
             ++  L  T + +   S   L  + TL+      +K +   +  L +L  ++ S    L
Sbjct: 25  EKMKTVLGKTNVTDTV-SQTDLDQVTTLQADR-LGIKSID-GVEYLNNLTQINFSNN-QL 80

Query: 101 ESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKS 160
                 L+ +  L +I +   + I ++   + NL  L  L L    ++  +   L NL +
Sbjct: 81  TDITP-LKNLTKLVDILMNN-NQIADITP-LANLTNLTGLTLFNN-QITDID-PLKNLTN 135

Query: 161 LERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEI 220
           L RL      I    S++  L  L+ LS      +     L+ L++L++L++   ++ +I
Sbjct: 136 LNRLELSSNTI-SDISALSGLTSLQQLSF--GNQVTDLKPLANLTTLERLDISSNKVSDI 192

Query: 221 PPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPELPLL--LVMLG 278
              +  L++LESL  + N I  +   +  L+ L  L L    +L+ +  L  L  L  L 
Sbjct: 193 SV-LAKLTNLESLIATNNQISDIT-PLGILTNLDELSLNGN-QLKDIGTLASLTNLTDLD 249

Query: 279 ASDCKRLQFLPELTSC--LEELDAS 301
            ++ + +  L  L+    L EL   
Sbjct: 250 LANNQ-ISNLAPLSGLTKLTELKLG 273

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 75.8 bits (187), Expect = 3e-15
 Identities = 45/218 (20%), Positives = 89/218 (40%), Gaps = 11/218 (5%)

Query: 41  NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINL 100
           N+ EL+L    ++++  ++  L NL  L+++  N +  L+  +  L  L  L L     +
Sbjct: 222 NLDELSLNGNQLKDIG-TLASLTNLTDLDLAN-NQISNLA-PLSGLTKLTELKLGAN-QI 277

Query: 101 ESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKS 160
            +    L  +  L  + L E + ++++   I NL+ L  L L     +  +   + +L  
Sbjct: 278 SNISP-LAGLTALTNLELNE-NQLEDISP-ISNLKNLTYLTLYFN-NISDISP-VSSLTK 332

Query: 161 LERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEI 220
           L+RL      +    SS+ +L  +  LS    +   L PL + L+ + +L L D      
Sbjct: 333 LQRLFFYNNKV-SDVSSLANLTNINWLSAGHNQISDLTPL-ANLTRITQLGLNDQAWTNA 390

Query: 221 PPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYL 258
           P +     S+ +   +       P +IS         +
Sbjct: 391 PVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDI 428

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 65.0 bits (159), Expect = 8e-12
 Identities = 49/217 (22%), Positives = 97/217 (44%), Gaps = 14/217 (6%)

Query: 88  SLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTK 147
            L S  ++    +         +    +  L + +N+ +  S   +L+ +  L+      
Sbjct: 2   PLGSATITQDTPINQIFT-DTALAEKMKTVLGK-TNVTDTVS-QTDLDQVTTLQADRL-G 57

Query: 148 LGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSL 207
           + S+ + +  L +L +++     +    + + +L KL  + +   +   + PL + L++L
Sbjct: 58  IKSI-DGVEYLNNLTQINFSNNQL-TDITPLKNLTKLVDILMNNNQIADITPL-ANLTNL 114

Query: 208 KKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCV-KLQS 266
             L L + +I +I P +  L++L  L LS N I  +  ++S L+ L+ L   N V  L+ 
Sbjct: 115 TGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQVTDLKP 172

Query: 267 LPELPLLLVMLGASDCK--RLQFLPELTSCLEELDAS 301
           L  L   L  L  S  K   +  L +LT+ LE L A+
Sbjct: 173 LANLT-TLERLDISSNKVSDISVLAKLTN-LESLIAT 207

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 83.2 bits (206), Expect = 1e-17
 Identities = 56/253 (22%), Positives = 104/253 (41%), Gaps = 19/253 (7%)

Query: 18  FISSIKIDCYKCVNLREFPR-ISGNVVELNLMCTPIEEVPLSI-ECLPNLETLEMSFCNS 75
                 + C++       P  I      L+L    I+ +        P+LE LE++  N 
Sbjct: 10  SAQDRAVLCHR-KRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNE-NI 67

Query: 76  LKRLSTSICK-LKSLRSLDLSYCINLESFP-EILEKMELLEEINLEEASNIKELPSSI-E 132
           +  +       L +LR+L L     L+  P  +   +  L ++++ E + I  L   + +
Sbjct: 68  VSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISE-NKIVILLDYMFQ 125

Query: 133 NLEGLKQLKLTGCTKLGSLPE-SLGNLKSLERLHAG---LLAIPQAPSSIVDLNKLETLS 188
           +L  LK L++     L  +   +   L SLE+L      L +IP    ++  L+ L  L 
Sbjct: 126 DLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCNLTSIP--TEALSHLHGLIVLR 182

Query: 189 LFECRGLVLPP-LLSGLSSLKKLELGD-CEIMEIPPDIGCLSSLESLNLSGNNIESLPT- 245
           L       +       L  LK LE+     +  + P+     +L SL+++  N+ ++P  
Sbjct: 183 LRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYL 242

Query: 246 SISQLSRLRWLYL 258
           ++  L  LR+L L
Sbjct: 243 AVRHLVYLRFLNL 255

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 80.9 bits (200), Expect = 6e-17
 Identities = 59/228 (25%), Positives = 100/228 (43%), Gaps = 15/228 (6%)

Query: 41  NVVELNLMCTPIEEVPLSI-ECLPNLETLEMSFCNSLKRLSTSI-CKLKSLRSLDLSYCI 98
           N+ +L++    I  +   + + L NL++LE+   N L  +S      L SL  L L  C 
Sbjct: 105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGD-NDLVYISHRAFSGLNSLEQLTLEKC- 162

Query: 99  NLESFP-EILEKMELLEEINLEEASNIKELPSSI-ENLEGLKQLKLTGCTKLGSLPESLG 156
           NL S P E L  +  L  + L    NI  +     + L  LK L+++    L ++  +  
Sbjct: 163 NLTSIPTEALSHLHGLIVLRLRH-LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL 221

Query: 157 NLKSLERL---HAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLEL 212
              +L  L   H  L A+P    ++  L  L  L+L       +   +L  L  L++++L
Sbjct: 222 YGLNLTSLSITHCNLTAVP--YLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQL 279

Query: 213 GDCEIMEIPPDI-GCLSSLESLNLSGNNIESLPTSI-SQLSRLRWLYL 258
              ++  + P     L+ L  LN+SGN + +L  S+   +  L  L L
Sbjct: 280 VGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 71.7 bits (176), Expect = 6e-14
 Identities = 37/187 (19%), Positives = 82/187 (43%), Gaps = 13/187 (6%)

Query: 62  LPNLETLEMSFCNSLKRLST-SICKLKSLRSLDLSYCINLESFPE-ILEKMELLEEINLE 119
           L +LE L +    +L  + T ++  L  L  L L +  N+ +  +   +++  L+ + + 
Sbjct: 151 LNSLEQLTLEK-CNLTSIPTEALSHLHGLIVLRLRHL-NINAIRDYSFKRLYRLKVLEIS 208

Query: 120 EASNIKELPSSIENLEGLKQLKLTGCTKLGSLPE-SLGNLKSLERLHAG---LLAIPQAP 175
               +  +  +      L  L +T C  L ++P  ++ +L  L  L+     +  I    
Sbjct: 209 HWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNPISTIE--G 265

Query: 176 SSIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIMEIPPDI-GCLSSLESL 233
           S + +L +L+ + L   +  V+ P    GL+ L+ L +   ++  +   +   + +LE+L
Sbjct: 266 SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETL 325

Query: 234 NLSGNNI 240
            L  N +
Sbjct: 326 ILDSNPL 332

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 82.8 bits (205), Expect = 2e-17
 Identities = 46/211 (21%), Positives = 80/211 (37%), Gaps = 29/211 (13%)

Query: 54  EVPLSIECLPNLETLEMSFC--NSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKME 111
            +      LP+L  L++S    +     S S     SLR LDLS+             +E
Sbjct: 341 SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMSANFMGLE 399

Query: 112 LLEEINLEEASNIKELP--SSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLL 169
            L+ ++ +  S +K +   S+  +LE L  L ++              L SL  L     
Sbjct: 400 ELQHLDFQH-STLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK---- 454

Query: 170 AIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDI-GCLS 228
                            ++    +   L  + +  ++L  L+L  C++ +I   +   L 
Sbjct: 455 -----------------MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497

Query: 229 SLESLNLSGNNIESLPTS-ISQLSRLRWLYL 258
            L+ LN+S NN+  L +S  +QL  L  L  
Sbjct: 498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 77.0 bits (190), Expect = 2e-15
 Identities = 51/257 (19%), Positives = 88/257 (34%), Gaps = 28/257 (10%)

Query: 11  CFPQNIHFISSIKIDCYKCVNLREFPR-ISGNVVELNLMCTPIEEVP-LSIECLPNLETL 68
                I  + +I   C     L + P  I  +   ++L   P++ +   S      L+ L
Sbjct: 3   SLNPCIEVVPNITYQCMDQ-KLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWL 61

Query: 69  EMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELP 128
           ++S C        +   L  L +L L+        P     +  LE +   E + +  L 
Sbjct: 62  DLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE-TKLASLE 120

Query: 129 S-SIENLEGLKQLKLTGCTKLGS--LPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLE 185
           S  I  L  LK+L +     + S  LP    NL +L  +              +  N ++
Sbjct: 121 SFPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVD-------------LSYNYIQ 166

Query: 186 TLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIES--L 243
           T+++ +     L  L         L++    I  I         L  L L GN   S  +
Sbjct: 167 TITVND-----LQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIM 221

Query: 244 PTSISQLSRLRWLYLVN 260
            T +  L+ L    L+ 
Sbjct: 222 KTCLQNLAGLHVHRLIL 238

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 42/275 (15%), Positives = 87/275 (31%), Gaps = 45/275 (16%)

Query: 32  LREFPRISGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCN-SLKRLSTSICKLKSLR 90
           L+         + L++   PI+ +         L  L +     S   + T +  L  L 
Sbjct: 173 LQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLH 232

Query: 91  SLDLSY-----CINLESFPE-ILEKMELLEEINLEEASN--IKELPSSIENLEGLKQLKL 142
              L         NLE F   I+E +  +              +       L  +  + L
Sbjct: 233 VHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSL 292

Query: 143 TGCTKLGSLPES--LGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPL 200
            G   +  L +       +SL  +   L   P      +DL  L++L+L   +G +    
Sbjct: 293 AGV-SIKYLEDVPKHFKWQSLSIIRCQLKQFP-----TLDLPFLKSLTLTMNKGSISFKK 346

Query: 201 LS-------------------------GLSSLKKLELGDCEIMEIPPDIGCLSSLESLNL 235
           ++                         G +SL+ L+L     + +  +   L  L+ L+ 
Sbjct: 347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDF 406

Query: 236 SGNNIESLP--TSISQLSRLRWLYLVNCVKLQSLP 268
             + ++ +   ++   L +L +L +      +   
Sbjct: 407 QHSTLKRVTEFSAFLSLEKLLYLDISYT-NTKIDF 440

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 70.1 bits (172), Expect = 3e-13
 Identities = 42/227 (18%), Positives = 79/227 (34%), Gaps = 16/227 (7%)

Query: 52  IEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEI--LEK 109
                 S     +L  L++SF N    +S +   L+ L+ LD  +   L+   E      
Sbjct: 365 SGCCSYSDLGTNSLRHLDLSF-NGAIIMSANFMGLEELQHLDFQHS-TLKRVTEFSAFLS 422

Query: 110 MELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPES-LGNLKSLERL---H 165
           +E L  +++   +   +       L  L  LK+ G +   +   +   N  +L  L    
Sbjct: 423 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 482

Query: 166 AGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIMEIPPDI 224
             L  I         L++L+ L++     L L     + L SL  L+     I      +
Sbjct: 483 CQLEQIS--WGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGIL 540

Query: 225 GC-LSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPEL 270
                SL   NL+ N++      I +  +           L ++ ++
Sbjct: 541 QHFPKSLAFFNLTNNSV----ACICEHQKFLQWVKEQKQFLVNVEQM 583

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 82.5 bits (204), Expect = 2e-17
 Identities = 51/239 (21%), Positives = 93/239 (38%), Gaps = 17/239 (7%)

Query: 31  NLREFPRISGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLR 90
            +      S N    +L     +        L +L+ L  +  N      + +  L SL 
Sbjct: 293 TIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS-NKGGNAFSEV-DLPSLE 350

Query: 91  SLDLSYC--INLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKL 148
            LDLS           +       L+ ++L   + +  + S+   LE L+ L       L
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF-NGVITMSSNFLGLEQLEHLDFQHS-NL 408

Query: 149 GSLPES--LGNLKSLERLHAG---LLAIPQAPSSIVDLNKLETLSLFECR--GLVLPPLL 201
             + E     +L++L  L                   L+ LE L +         LP + 
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAF--NGIFNGLSSLEVLKMAGNSFQENFLPDIF 466

Query: 202 SGLSSLKKLELGDCEIMEIPPDI-GCLSSLESLNLSGNNIESLPTSI-SQLSRLRWLYL 258
           + L +L  L+L  C++ ++ P     LSSL+ LN++ N ++S+P  I  +L+ L+ ++L
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWL 525

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 74.4 bits (183), Expect = 1e-14
 Identities = 52/266 (19%), Positives = 94/266 (35%), Gaps = 23/266 (8%)

Query: 19  ISSIKIDCYKCVNLREFPRISGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCN-SLK 77
           +SS KI    C +LR   ++    + L+L   P+  +         L  L +     SL 
Sbjct: 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLN 215

Query: 78  RLSTSICKLKSLRSLDLSY-----CINLESFPE-ILEKMELLEEINLEEASN---IKELP 128
            + T I  L  L    L         NLE F +  LE +  L       A     + ++ 
Sbjct: 216 VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII 275

Query: 129 SSIENLEGLKQLKLTGCTKLGSLPES--LGNLKSLERLHAGLLAIPQAPSSIVDLNKLET 186
                L  +    L     +  + +       + LE ++      P      + L  L+ 
Sbjct: 276 DLFNCLTNVSSFSLVSV-TIERVKDFSYNFGWQHLELVNCKFGQFPT-----LKLKSLKR 329

Query: 187 LSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGC---LSSLESLNLSGNNIESL 243
           L+    +G      +  L SL+ L+L    +             +SL+ L+LS N + ++
Sbjct: 330 LTFTSNKGGNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM 388

Query: 244 PTSISQLSRLRWLYLVNCVKLQSLPE 269
            ++   L +L  L   +   L+ + E
Sbjct: 389 SSNFLGLEQLEHLDFQHS-NLKQMSE 413

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 71.3 bits (175), Expect = 1e-13
 Identities = 59/252 (23%), Positives = 97/252 (38%), Gaps = 16/252 (6%)

Query: 15  NIHFISSIKIDCYKCVNLREFPRIS-GNVVELNLMCTPIEEVPLSIECLPNLETLEMSFC 73
           +  +    +          +FP +   ++  L            S   LP+LE L++S  
Sbjct: 299 DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF-SEVDLPSLEFLDLSRN 357

Query: 74  --NSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELP--S 129
             +     S S     SL+ LDLS+   + +       +E LE ++ +  SN+K++   S
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQH-SNLKQMSEFS 415

Query: 130 SIENLEGLKQLKLTGCTKLGSLP-ESLGNLKSLERLHAG--LLAIPQAPSSIVDLNKLET 186
              +L  L  L ++               L SLE L            P    +L  L  
Sbjct: 416 VFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474

Query: 187 LSLFECRGLVLPP-LLSGLSSLKKLELGDCEIMEIPPDI-GCLSSLESLNLSGNNIESLP 244
           L L +C+   L P   + LSSL+ L +   ++  +P  I   L+SL+ + L  N  +   
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 534

Query: 245 TSISQLSRLRWL 256
             I  LS  RWL
Sbjct: 535 PRIDYLS--RWL 544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 71.3 bits (175), Expect = 1e-13
 Identities = 64/263 (24%), Positives = 105/263 (39%), Gaps = 37/263 (14%)

Query: 63  PNLETLEMSFCNSLKRL-STSICKLKSLRSLDLSYCINLESFP-EILEKMELLEEINLEE 120
            + + L++SF N L+ L S S      L+ LDLS C  +++      + +  L  + L  
Sbjct: 28  FSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTG 85

Query: 121 ASNIKELPSSI-ENLEGLKQLKLTGCTKLGSLPE-SLGNLKSLERLHAGLLAIPQAPSSI 178
            + I+ L       L  L++L       L SL    +G+LK+L+ L+             
Sbjct: 86  -NPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELN------------- 130

Query: 179 VDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPP-DIGCLSSLE----SL 233
           V  N +++  L        P   S L++L+ L+L   +I  I   D+  L  +     SL
Sbjct: 131 VAHNLIQSFKL--------PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182

Query: 234 NLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPELPLLLVMLGASDCKRLQFLP-ELT 292
           +LS N +  +     +  RL  L L N     ++      +  L   +  RL        
Sbjct: 183 DLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVM--KTCIQGLAGLEVHRLVLGEFRNE 240

Query: 293 SCLEELDASILQALSNRTGERLS 315
             LE+ D S L+ L N T E   
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFR 263

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 69.7 bits (171), Expect = 3e-13
 Identities = 49/223 (21%), Positives = 89/223 (39%), Gaps = 15/223 (6%)

Query: 54  EVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELL 113
           ++     CL N+ +  +    +++R+          + L+L  C     FP +  K++ L
Sbjct: 273 DIIDLFNCLTNVSSFSLVS-VTIERVK-DFSYNFGWQHLELVNC-KFGQFPTL--KLKSL 327

Query: 114 EEINLEEASNIKELPSSIENLEGLKQLKLTGC--TKLGSLPESLGNLKSLERLHAGLLAI 171
           + +     SN      S  +L  L+ L L+    +  G   +S     SL+ L      +
Sbjct: 328 KRLTF--TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385

Query: 172 PQAPSSIVDLNKLETLSLFECRGLVLPP--LLSGLSSLKKLELGDCEIMEIPPDI-GCLS 228
               S+ + L +LE L         +    +   L +L  L++           I   LS
Sbjct: 386 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445

Query: 229 SLESLNLSGNNIES--LPTSISQLSRLRWLYLVNCVKLQSLPE 269
           SLE L ++GN+ +   LP   ++L  L +L L  C +L+ L  
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSP 487

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 81.2 bits (201), Expect = 3e-17
 Identities = 47/222 (21%), Positives = 86/222 (38%), Gaps = 21/222 (9%)

Query: 41  NVVELNLMCTPIEEVPLSI-ECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCIN 99
            +  L++    +E +     +   +L+ L++S  N L  +  S+  + SL   ++SY   
Sbjct: 142 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-NRLTHVDLSL--IPSLFHANVSYN-L 197

Query: 100 LESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLK 159
           L +          +EE++     +I  +   +     L  LKL     L      L N  
Sbjct: 198 LSTLA----IPIAVEELDASHN-SINVVRGPV--NVELTILKLQH-NNLTDTA-WLLNYP 248

Query: 160 SLERLHAG---LLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCE 216
            L  +      L  I       V + +LE L +   R + L      + +LK L+L    
Sbjct: 249 GLVEVDLSYNELEKIM--YHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH 306

Query: 217 IMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYL 258
           ++ +  +      LE+L L  N+I +L   +S    L+ L L
Sbjct: 307 LLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTL 346

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 69.7 bits (171), Expect = 2e-13
 Identities = 32/220 (14%), Positives = 73/220 (33%), Gaps = 15/220 (6%)

Query: 55  VPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFP-EILEKMELL 113
           +  +++       + +               L + + +       +   P  +L+    +
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS-TMRKLPAALLDSFRQV 71

Query: 114 EEINLEEASNIKELPSSI-ENLEGLKQLKLTGCTKLGSLPES-LGNLKSLERLHAGLLAI 171
           E +NL +   I+E+ +        +++L +     +  LP     N+  L  L      +
Sbjct: 72  ELLNLND-LQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDL 129

Query: 172 PQAPSSI-VDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIMEIPPDIGCLSS 229
              P  I  +  KL TLS+       +        +SL+ L+L    +  +      + S
Sbjct: 130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL--SLIPS 187

Query: 230 LESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPE 269
           L   N+S N + +L         +  L   +   +  +  
Sbjct: 188 LFHANVSYNLLSTLAI----PIAVEELDASHN-SINVVRG 222

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 81.1 bits (201), Expect = 7e-17
 Identities = 43/197 (21%), Positives = 75/197 (38%), Gaps = 10/197 (5%)

Query: 70  MSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPS 129
                    +S+S+  L  L SL LS      S          L  ++L   S    + +
Sbjct: 60  KPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFK-CSASLTSLDLSRNSLSGPVTT 118

Query: 130 --SIENLEGLKQLKLTGCTKLGSLPESLG-NLKSLERLHAGL----LAIPQAPSSIVDLN 182
             S+ +  GLK L ++  T       S G  L SLE L         A            
Sbjct: 119 LTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 178

Query: 183 KLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIE- 241
           +L+ L++   + +     +S   +L+ L++         P +G  S+L+ L++SGN +  
Sbjct: 179 ELKHLAISGNK-ISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG 237

Query: 242 SLPTSISQLSRLRWLYL 258
               +IS  + L+ L +
Sbjct: 238 DFSRAISTCTELKLLNI 254

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 78.8 bits (195), Expect = 4e-16
 Identities = 55/264 (20%), Positives = 88/264 (33%), Gaps = 56/264 (21%)

Query: 54  EVPLSIECLPNLETLEMSFCNSLKRLSTSI--CKLKSLRSLDLSYCINLE-SFP-EILEK 109
           +   +I     L+ L +S           I    LKSL+ L L+         P  +   
Sbjct: 238 DFSRAISTCTELKLLNISSNQ----FVGPIPPLPLKSLQYLSLAEN-KFTGEIPDFLSGA 292

Query: 110 MELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLP-ESLGNLKSLERLHAG- 167
            + L  ++L        +P    +   L+ L L+     G LP ++L  ++ L+ L    
Sbjct: 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352

Query: 168 -LL--AIPQA----------------------PSSI--VDLNKLETLSLFECR--GLVLP 198
                 +P++                        ++     N L+ L L      G  +P
Sbjct: 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG-KIP 411

Query: 199 PLLSGLSSLKKLELGDCEIM-EIPPDIGCLSSLESLNLSGNNIE-SLPTSISQLSRLRWL 256
           P LS  S L  L L    +   IP  +G LS L  L L  N +E  +P  +  +  L  L
Sbjct: 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471

Query: 257 YL-------------VNCVKLQSL 267
            L              NC  L  +
Sbjct: 472 ILDFNDLTGEIPSGLSNCTNLNWI 495

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 78.4 bits (194), Expect = 5e-16
 Identities = 48/210 (22%), Positives = 83/210 (39%), Gaps = 22/210 (10%)

Query: 62  LPNLETLEMSFCN---SLKRLSTSICKLKSLRSLDLSYCINLE-SFPEILEKMELLEEIN 117
           L +LE L++S  +   +             L+ L +S    +       + +   LE ++
Sbjct: 150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN-KISGDVD--VSRCVNLEFLD 206

Query: 118 LEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAG--LL--AIPQ 173
           +   +    +P  + +   L+ L ++G    G    ++     L+ L+         IP 
Sbjct: 207 VSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP 265

Query: 174 APSSIVDLNKLETLSLFECR--GLVLPPLLSGLSSLKKLELGDCEIM-EIPPDIGCLSSL 230
            P     L  L+ LSL E +  G +   L     +L  L+L        +PP  G  S L
Sbjct: 266 LP-----LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL 320

Query: 231 ESLNLSGNNIE-SLPT-SISQLSRLRWLYL 258
           ESL LS NN    LP  ++ ++  L+ L L
Sbjct: 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDL 350

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 76.1 bits (188), Expect = 3e-15
 Identities = 49/257 (19%), Positives = 80/257 (31%), Gaps = 54/257 (21%)

Query: 54  EVPLSIECLPNLETLEMSFCNSLK-RLSTSICKLKSLRSLDLSYCINLE-SFPEILEKME 111
            +P S+  L  L  L++   N L+  +   +  +K+L +L L +  +L    P  L    
Sbjct: 433 TIPSSLGSLSKLRDLKLWL-NMLEGEIPQELMYVKTLETLILDFN-DLTGEIPSGLSNCT 490

Query: 112 LLEEINLEEASNIKELPSSIENLEGLKQL-----KLTG--------CTKL---------- 148
            L  I+L       E+P  I  LE L  L       +G        C  L          
Sbjct: 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550

Query: 149 -GSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSL 207
            G++P ++         +           +     +            +    L+ LS+ 
Sbjct: 551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610

Query: 208 KKL-------------ELGDCEIM------------EIPPDIGCLSSLESLNLSGNNIE- 241
                              +   M             IP +IG +  L  LNL  N+I  
Sbjct: 611 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670

Query: 242 SLPTSISQLSRLRWLYL 258
           S+P  +  L  L  L L
Sbjct: 671 SIPDEVGDLRGLNILDL 687

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 74.9 bits (185), Expect = 9e-15
 Identities = 43/228 (18%), Positives = 83/228 (36%), Gaps = 28/228 (12%)

Query: 62  LPNLETLEMSFCNSLK-RLSTSICKLKSLRSLDLSYCINLE-SFPEILEKMELLEEINLE 119
              L+ L +   N    ++  ++     L SL LS+   L  + P  L  +  L ++ L 
Sbjct: 393 KNTLQELYLQN-NGFTGKIPPTLSNCSELVSLHLSFN-YLSGTIPSSLGSLSKLRDLKLW 450

Query: 120 EASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIV 179
                 E+P  +  ++ L+ L L      G +P  L N  +L  +              +
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS-------------L 497

Query: 180 DLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIM-EIPPDIGCLSSLESLNLSGN 238
             N+L         G  +P  +  L +L  L+L +      IP ++G   SL  L+L+ N
Sbjct: 498 SNNRLT--------G-EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548

Query: 239 NIE-SLPTSISQLSRLRWLYLVNCVKLQSLPELPLLLVMLGASDCKRL 285
               ++P ++ + S       +   +   +    +     GA +    
Sbjct: 549 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 68.4 bits (168), Expect = 9e-13
 Identities = 42/190 (22%), Positives = 72/190 (37%), Gaps = 15/190 (7%)

Query: 84  CKLKSLRSLDLSYC---INLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQL 140
           C+   + S+DLS     +   +    L  +  LE + L  +     +    +    L  L
Sbjct: 47  CRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSL 105

Query: 141 KLTGCTKLGSLPE--SLGNLKSLERLHAG--LLAIPQAPSSIVDLNKLETLSLFECR--G 194
            L+  +  G +    SLG+   L+ L+     L  P   S  + LN LE L L      G
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG 165

Query: 195 LVLPPL--LSGLSSLKKLELGDCEIM-EIPPDIGCLSSLESLNLSGNNIESLPTSISQLS 251
             +       G   LK L +   +I  ++   +    +LE L++S NN  +    +   S
Sbjct: 166 ANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCS 223

Query: 252 RLRWLYLVNC 261
            L+ L +   
Sbjct: 224 ALQHLDISGN 233

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 64.2 bits (157), Expect = 2e-11
 Identities = 45/237 (18%), Positives = 76/237 (32%), Gaps = 62/237 (26%)

Query: 54  EVPLSIECLPNLETLEMSFCNSLK-RLSTSICKLKSLRSLDLSY-------------CIN 99
           E+P  I  L NL  L++S  NS    +   +   +SL  LDL+                 
Sbjct: 505 EIPKWIGRLENLAILKLSN-NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 563

Query: 100 LES-------FPEILEKMELLEEINLEEASNI--KELPSSIENLEGLKQLKLTGCTKLGS 150
             +           ++   + +E +               +  L       +T     G 
Sbjct: 564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 623

Query: 151 LPESLGNLKSLERLHAGLLAIPQAPSSIVDL--NKLETLSLFECRGLVLPPLLSGLSSLK 208
              +  N  S+  L               D+  N L         G  +P  +  +  L 
Sbjct: 624 TSPTFDNNGSMMFL---------------DMSYNMLS--------G-YIPKEIGSMPYLF 659

Query: 209 KLEL------GDCEIMEIPPDIGCLSSLESLNLSGNNIE-SLPTSISQLSRLRWLYL 258
            L L      G      IP ++G L  L  L+LS N ++  +P ++S L+ L  + L
Sbjct: 660 ILNLGHNDISG-----SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 10/95 (10%)

Query: 197 LPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIE-SLPT--SISQLSRL 253
           +   L  L+ L+ L L +  I        C +SL SL+LS N++   + T  S+   S L
Sbjct: 69  VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128

Query: 254 RWLYLVNCVKLQSLPELPLLLVMLGASDCKRLQFL 288
           ++L + +   L    ++   L          L+ L
Sbjct: 129 KFLNVSSN-TLDFPGKVSGGL------KLNSLEVL 156

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 80.7 bits (199), Expect = 8e-17
 Identities = 56/265 (21%), Positives = 99/265 (37%), Gaps = 26/265 (9%)

Query: 41  NVVELNLMCTPIEEVPLSI-ECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCIN 99
            +  L++    +E +     +   +L+ L++S  N L  +  S+  + SL   ++SY   
Sbjct: 148 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-NRLTHVDLSL--IPSLFHANVSYN-L 203

Query: 100 LESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLK 159
           L +          +EE++     +I  +   +     L  LKL     L      L N  
Sbjct: 204 LSTLA----IPIAVEELDASHN-SINVVRGPV--NVELTILKLQH-NNLTDTA-WLLNYP 254

Query: 160 SLERLHAG---LLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCE 216
            L  +      L  I       V + +LE L +   R + L      + +LK L+L    
Sbjct: 255 GLVEVDLSYNELEKIM--YHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH 312

Query: 217 IMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVN----CVKLQSLP-ELP 271
           ++ +  +      LE+L L  N+I +L   +S    L+ L L +    C  L++L   + 
Sbjct: 313 LLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVA 370

Query: 272 LLLVMLGASDCKRLQFLPELTSCLE 296
              V      CK    L     C E
Sbjct: 371 RPAVDDADQHCKIDYQLEHGLCCKE 395

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 67.6 bits (165), Expect = 2e-12
 Identities = 43/255 (16%), Positives = 89/255 (34%), Gaps = 33/255 (12%)

Query: 62  LPNLETLEMSFCNSLKRLSTSI-CKLKSLRSLDLSYCINLESFP-EILEKMELLEEINLE 119
           L N + +     +++++L  ++    + +  L+L+    +E            ++++ + 
Sbjct: 50  LNNQKIVTFK-NSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYM- 106

Query: 120 EASNIKELPSSI-ENLEGLKQLKLTGCTKLGSLPESL-GNLKSLERLHAG---LLAIPQA 174
             + I+ LP  + +N+  L  L L     L SLP  +  N   L  L      L  I   
Sbjct: 107 GFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIE-- 163

Query: 175 PSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLN 234
             +      L+ L L   R   +    S + SL    +    +  +        ++E L+
Sbjct: 164 DDTFQATTSLQNLQLSSNRLTHVDL--SLIPSLFHANVSYNLLSTLAI----PIAVEELD 217

Query: 235 LSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPELPLLLVMLGASDCKRLQFLPELTSC 294
            S N+I  +   +     L  L L +   L     L          +   L  + +L+  
Sbjct: 218 ASHNSINVVRGPV--NVELTILKLQHN-NLTDTAWL---------LNYPGLVEV-DLSYN 264

Query: 295 -LEELDASILQALSN 308
            LE++       +  
Sbjct: 265 ELEKIMYHPFVKMQR 279

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 56.5 bits (136), Expect = 7e-09
 Identities = 26/152 (17%), Positives = 63/152 (41%), Gaps = 9/152 (5%)

Query: 124 IKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERL---HAGLLAIPQAPSSIVD 180
            K + S+++       + +   T+          L + + +   ++ +  +P   + +  
Sbjct: 16  YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLP--AALLDS 73

Query: 181 LNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIMEIPPDI-GCLSSLESLNLSGN 238
             ++E L+L + +   +     +   +++KL +G   I  +PP +   +  L  L L  N
Sbjct: 74  FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 133

Query: 239 NIESLPTSI-SQLSRLRWLYLVNCVKLQSLPE 269
           ++ SLP  I     +L  L + N   L+ + +
Sbjct: 134 DLSSLPRGIFHNTPKLTTLSMSNN-NLERIED 164

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 77.7 bits (192), Expect = 2e-16
 Identities = 52/215 (24%), Positives = 86/215 (40%), Gaps = 17/215 (7%)

Query: 54  EVPLSIECLPNLETLEMSFCNSLKRLSTSI-CKLKSLRSLDLSYCINLESFPE-ILEKME 111
            VP+ I      + + +   N +  +  +     ++L  L L     L          + 
Sbjct: 25  AVPVGI--PAASQRIFLHG-NRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLA 80

Query: 112 LLEEINLEEASNIKELPSSI-ENLEGLKQLKLTGCTKLGSLPE-SLGNLKSLERLHAG-- 167
           LLE+++L + + ++ +  +    L  L  L L  C  L  L       L +L+ L+    
Sbjct: 81  LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDN 139

Query: 168 -LLAIPQAPSSIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIMEIPPDI- 224
            L A+P    +  DL  L  L L   R   +P     GL SL +L L    +  + P   
Sbjct: 140 ALQALP--DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197

Query: 225 GCLSSLESLNLSGNNIESLPTSI-SQLSRLRWLYL 258
             L  L +L L  NN+ +LPT   + L  L++L L
Sbjct: 198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 232

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 13/108 (12%)

Query: 205 SSLKKLELGDCEIMEIPPDI-GCLSSLESLNLSGNNIESLPTSI-SQLSRLRWLYLVNCV 262
           ++ +++ L    I  +P        +L  L L  N +  +  +  + L+ L  L L +  
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 263 KLQSLPELPLLLVMLGA-SDCKRLQFLPELTSC-LEELDASILQALSN 308
           +L+S+                 RL  L  L  C L+EL   + + L+ 
Sbjct: 92  QLRSVDP--------ATFHGLGRLHTL-HLDRCGLQELGPGLFRGLAA 130

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 79.7 bits (197), Expect = 2e-16
 Identities = 48/212 (22%), Positives = 78/212 (36%), Gaps = 15/212 (7%)

Query: 57  LSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCIN--LESFPEILEKMELLE 114
                L +L+ L  +        + S   L SL  LDLS           +       L+
Sbjct: 319 FPTLKLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376

Query: 115 EINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPES-LGNLKSLERLHAG---LLA 170
            ++L   + +  + S+   LE L+ L             S   +L++L  L         
Sbjct: 377 YLDLSF-NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435

Query: 171 IPQAPSSIVDLNKLETLSLFECR--GLVLPPLLSGLSSLKKLELGDCEIMEIPPD-IGCL 227
                     L+ LE L +         LP + + L +L  L+L  C++ ++ P     L
Sbjct: 436 AF--NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493

Query: 228 SSLESLNLSGNNIESL-PTSISQLSRLRWLYL 258
           SSL+ LN+S NN  SL       L+ L+ L  
Sbjct: 494 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 525

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 76.2 bits (188), Expect = 3e-15
 Identities = 49/254 (19%), Positives = 84/254 (33%), Gaps = 36/254 (14%)

Query: 18  FISSIKIDCYKCVNLREFPR-ISGNVVELNLMCTPIEEV-PLSIECLPNLETLEMSFCNS 75
            + +I   C +  N  + P  +  +   L+L   P+  +   S    P L+ L++S C  
Sbjct: 6   VVPNITYQCMEL-NFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI 64

Query: 76  LKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLE 135
                 +   L  L +L L+    ++S                           +   L 
Sbjct: 65  QTIEDGAYQSLSHLSTLILTGN-PIQSLA-----------------------LGAFSGLS 100

Query: 136 GLKQLKLTGCTKLGSLPESLGNLKSLERLHAG--LLAIPQAPSSIVDLNKLETLSLFECR 193
            L++L              +G+LK+L+ L+    L+   + P    +L  LE L L   +
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160

Query: 194 -GLVLPPLLSGLSSLK----KLELGDCEIMEIPPDIGCLSSLESLNLSGNNI--ESLPTS 246
              +    L  L  +      L+L    +  I P       L  L L  N      + T 
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTC 220

Query: 247 ISQLSRLRWLYLVN 260
           I  L+ L    LV 
Sbjct: 221 IQGLAGLEVHRLVL 234

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 71.6 bits (176), Expect = 9e-14
 Identities = 41/198 (20%), Positives = 79/198 (39%), Gaps = 13/198 (6%)

Query: 52  IEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYC-INLESFPEILEKM 110
                 S     +L+ L++SF N +  +S++   L+ L  LD  +  +   S   +   +
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSF-NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420

Query: 111 ELLEEINLEEASNIKEL-PSSIENLEGLKQLKLTGCTKLGSL-PESLGNLKSLERLHA-- 166
             L  +++   ++ +         L  L+ LK+ G +   +  P+    L++L  L    
Sbjct: 421 RNLIYLDISH-THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

Query: 167 -GLLAIPQAPSSIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIMEIPPDI 224
             L  +   P++   L+ L+ L++       L       L+SL+ L+     IM      
Sbjct: 480 CQLEQLS--PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 537

Query: 225 --GCLSSLESLNLSGNNI 240
                SSL  LNL+ N+ 
Sbjct: 538 LQHFPSSLAFLNLTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 71.6 bits (176), Expect = 9e-14
 Identities = 49/265 (18%), Positives = 89/265 (33%), Gaps = 29/265 (10%)

Query: 18  FISSIKIDCYKCVNLREFPRISGNVVELNLMCTPIEEVPLSIECLPNLETLEMS---FCN 74
            ++ I+   +K + L +   +  N   LN+M          I+ L  LE   +    F N
Sbjct: 188 PMNFIQPGAFKEIRLHKL-TLRNNFDSLNVM-------KTCIQGLAGLEVHRLVLGEFRN 239

Query: 75  SLKRLSTSICKLKSLRSLDLSYC------INLESFPEILEKMELLEEINLEEASNIKELP 128
                      L+ L +L +           L+   ++   +  +   +L     I+ + 
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS-VTIERVK 298

Query: 129 SSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLS 188
                  G + L+L  C         L +LK L               S VDL  LE L 
Sbjct: 299 D-FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF----SEVDLPSLEFLD 353

Query: 189 LFECR---GLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESL-- 243
           L                G +SLK L+L    ++ +  +   L  LE L+   +N++ +  
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE 413

Query: 244 PTSISQLSRLRWLYLVNCVKLQSLP 268
            +    L  L +L + +    +   
Sbjct: 414 FSVFLSLRNLIYLDISHT-HTRVAF 437

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 76.4 bits (189), Expect = 8e-16
 Identities = 48/231 (20%), Positives = 88/231 (38%), Gaps = 39/231 (16%)

Query: 39  SGNVVELNLMCTPIE---EVPLSIECLPNLETLEMSFCNSLK-RLSTSICKLKSLRSLDL 94
           +  V  L+L    +     +P S+  LP L  L +   N+L   +  +I KL  L  L +
Sbjct: 49  TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108

Query: 95  SYCINLE-SFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPE 153
           ++  N+  + P+ L +++ L  ++    +    LP SI +L  L  +   G    G++P+
Sbjct: 109 THT-NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 154 SLGNLKSLER---LHAGLL--AIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLK 208
           S G+   L     +    L   IP    +  +LN L  + L           L G     
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIP---PTFANLN-LAFVDLSRNM-------LEG----- 211

Query: 209 KLELGDCEIMEIPPDIGCLSSLESLNLSGNNIE-SLPTSISQLSRLRWLYL 258
                     +     G   + + ++L+ N++   L   +     L  L L
Sbjct: 212 ----------DASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDL 251

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 55.6 bits (135), Expect = 7e-09
 Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 6/90 (6%)

Query: 175 PSSIVDLNKLETLSLFECR---GLVLPPLLSGLSSLKKLELGDCEIM--EIPPDIGCLSS 229
             +     ++  L L          +P  L+ L  L  L +G    +   IPP I  L+ 
Sbjct: 43  CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ 102

Query: 230 LESLNLSGNNIE-SLPTSISQLSRLRWLYL 258
           L  L ++  N+  ++P  +SQ+  L  L  
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 72.7 bits (179), Expect = 2e-15
 Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 6/182 (3%)

Query: 63  PNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEAS 122
              +             + +  ++ SL  + L+   N+      +E    ++++ +    
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANI-NVTDL-TGIEYAHNIKDLTINN-I 76

Query: 123 NIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAI-PQAPSSIVDL 181
           +     + I  L  L++L++ G         +L  L SL  L     A      + I  L
Sbjct: 77  HATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL 135

Query: 182 NKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIE 241
            K+ ++ L     +     L  L  LK L +    + +    I     L  L      I 
Sbjct: 136 PKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRG-IEDFPKLNQLYAFSQTIG 194

Query: 242 SL 243
             
Sbjct: 195 GK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.1 bits (149), Expect = 3e-11
 Identities = 28/165 (16%), Positives = 55/165 (33%), Gaps = 7/165 (4%)

Query: 113 LEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIP 172
            +               +   +  L  + L     +  L   +    +++ L    +   
Sbjct: 22  FKAYLNGLLGQSSTANITEAQMNSLTYITLANI-NVTDL-TGIEYAHNIKDLTINNIHAT 79

Query: 173 QAPSSIVDLNKLETLSLFECR-GLVLPPLLSGLSSLKKLELGDCEIMEIPPD-IGCLSSL 230
              + I  L+ LE L +          P LSGL+SL  L++      +     I  L  +
Sbjct: 80  NY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV 138

Query: 231 ESLNLSGNNIESLPTSISQLSRLRWLYLVNC--VKLQSLPELPLL 273
            S++LS N   +    +  L  L+ L +        + + + P L
Sbjct: 139 NSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKL 183

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 25/127 (19%), Positives = 50/127 (39%), Gaps = 4/127 (3%)

Query: 41  NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINL 100
           N+ +L +           I  L NLE L +   +       ++  L SL  LD+S+  + 
Sbjct: 67  NIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125

Query: 101 ESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKS 160
           +S    +  +  +  I+L     I ++   ++ L  LK L +     +      + +   
Sbjct: 126 DSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFD-GVHDY-RGIEDFPK 182

Query: 161 LERLHAG 167
           L +L+A 
Sbjct: 183 LNQLYAF 189

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 75.9 bits (187), Expect = 3e-15
 Identities = 62/245 (25%), Positives = 99/245 (40%), Gaps = 56/245 (22%)

Query: 31  NLREFPR-ISGNVVELNLMCTPIEEVP-LSIECLPNLETLEMSFCNSLKRLSTSI-CKLK 87
            L E P+ I  N   LNLM   I+ +   +   L +LE L++   NS++++       L 
Sbjct: 65  GLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGR-NSIRQIEVGAFNGLA 123

Query: 88  SLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSI-ENLEGLKQLKLTGCT 146
           SL +L+L                             +  +PS   E L  L++L L    
Sbjct: 124 SLNTLELFDN-------------------------WLTVIPSGAFEYLSKLRELWLRNN- 157

Query: 147 KLGSLPE-SLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLS 205
            + S+P  +   + SL RL             + +L KLE +S              GL 
Sbjct: 158 PIESIPSYAFNRVPSLMRLD------------LGELKKLEYIS---------EGAFEGLF 196

Query: 206 SLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPT-SISQLSRLRWLYLVNCVKL 264
           +LK L LG C I ++P     L  LE L +SGN+   +   S   LS L+ L+++N  ++
Sbjct: 197 NLKYLNLGMCNIKDMPNLTP-LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS-QV 254

Query: 265 QSLPE 269
             +  
Sbjct: 255 SLIER 259

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 73.2 bits (180), Expect = 2e-14
 Identities = 50/185 (27%), Positives = 77/185 (41%), Gaps = 14/185 (7%)

Query: 62  LPNLETLEMSFCNSLKRLSTSI-CKLKSLRSLDLSYCINLESFPE-ILEKMELLEEINLE 119
           L +L TLE+   N L  + +     L  LR L L     +ES P     ++  L  ++L 
Sbjct: 122 LASLNTLELFD-NWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLG 179

Query: 120 EASNIKELPSSI-ENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAG---LLAIPQAP 175
           E   ++ +     E L  LK L L  C  +  +P +L  L  LE L         I   P
Sbjct: 180 ELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMP-NLTPLVGLEELEMSGNHFPEIR--P 235

Query: 176 SSIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIMEIPPDI-GCLSSLESL 233
            S   L+ L+ L +   +  ++      GL+SL +L L    +  +P D+   L  L  L
Sbjct: 236 GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVEL 295

Query: 234 NLSGN 238
           +L  N
Sbjct: 296 HLHHN 300

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 74.7 bits (184), Expect = 4e-15
 Identities = 45/245 (18%), Positives = 101/245 (41%), Gaps = 25/245 (10%)

Query: 41  NVVELNLMCTPIEEVPLSI-ECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCIN 99
           N+  L L+   I ++       L  LE L +S  N LK L   +   K+L+ L +     
Sbjct: 77  NLHTLILINNKISKISPGAFAPLVKLERLYLSK-NQLKELPEKM--PKTLQELRVHEN-E 132

Query: 100 LESFPE-ILEKMELLEEINLE----EASNIKELPSSIENLEGLKQLKLTGCTKLGSLPES 154
           +    + +   +  +  + L     ++S I+    + + ++ L  +++     + ++P+ 
Sbjct: 133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIE--NGAFQGMKKLSYIRIADT-NITTIPQG 189

Query: 155 LGNLKSLERLHAGLLAIPQ-APSSIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLEL 212
           L    SL  LH     I +   +S+  LN L  L L       +    L+    L++L L
Sbjct: 190 L--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 247

Query: 213 GDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTS-------ISQLSRLRWLYLV-NCVKL 264
            + +++++P  +     ++ + L  NNI ++ ++        ++ +    + L  N V+ 
Sbjct: 248 NNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307

Query: 265 QSLPE 269
             +  
Sbjct: 308 WEIQP 312

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 36/192 (18%), Positives = 75/192 (39%), Gaps = 21/192 (10%)

Query: 62  LPNLETLEMSFCNSLKRL---STSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINL 118
           L  +  +E+   N LK     + +   +K L  + ++   N+ + P+ L     L E++L
Sbjct: 144 LNQMIVVELGT-NPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGL--PPSLTELHL 199

Query: 119 EEASNIKELPS-SIENLEGLKQLKLTGCTKLGSLPE-SLGNLKSLERLHAGLLAIPQAPS 176
           +  + I ++ + S++ L  L +L L+    + ++   SL N   L  LH     + + P 
Sbjct: 200 DG-NKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNKLVKVPG 257

Query: 177 SIVDLNKLETLSL-------FECRGLVLPPLLSGLSSLKKLELGDCEI--MEIPPDI-GC 226
            + D   ++ + L               P   +  +S   + L    +   EI P    C
Sbjct: 258 GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC 317

Query: 227 LSSLESLNLSGN 238
           +    ++ L   
Sbjct: 318 VYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 29/155 (18%), Positives = 68/155 (43%), Gaps = 16/155 (10%)

Query: 123 NIKELPSSIENLEGLKQLKLTGCTKLGSLPE-SLGNLKSLERL---HAGLLAIPQAPSSI 178
            ++++P  +        L L    K+  + +    NLK+L  L   +  +  I   P + 
Sbjct: 42  GLEKVPKDL--PPDTALLDLQN-NKITEIKDGDFKNLKNLHTLILINNKISKIS--PGAF 96

Query: 179 VDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDI-GCLSSLESLNLSG 237
             L KLE L L + +   LP  +    +L++L + + EI ++   +   L+ +  + L  
Sbjct: 97  APLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT 154

Query: 238 NNIESL---PTSISQLSRLRWLYLVNCVKLQSLPE 269
           N ++S      +   + +L ++ + +   + ++P+
Sbjct: 155 NPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQ 188

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 75.6 bits (186), Expect = 5e-15
 Identities = 57/262 (21%), Positives = 109/262 (41%), Gaps = 32/262 (12%)

Query: 41  NVVELNLMCTPIEEV-PLSIECLPNLETLEMSFCNSLKRLSTSI-CKLKSLRSLDLSYCI 98
           +V  L+L    +  +     E L +L+ L +++ N + +++      L +L+ L+LSY +
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAY-NKINKIADEAFYGLDNLQVLNLSYNL 325

Query: 99  NLESFPEILEKMELLEEINLEEASNIKELPSSI-ENLEGLKQLKLTGC--------TKLG 149
             E +      +  +  I+L++ ++I  +     + LE L+ L L             + 
Sbjct: 326 LGELYSSNFYGLPKVAYIDLQK-NHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIP 384

Query: 150 SLPESLGNLKSLERLHAGL---------LAIPQAPSSIVDLNKLETLSLFECRGLVLPP- 199
            +  S   L +L +++            L        ++ +  L+ L L + R       
Sbjct: 385 DIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGD 444

Query: 200 -LLSGLSSLKKLELGDCEI-----MEIPPDI-GCLSSLESLNLSGNNIESLPTSI-SQLS 251
              S   SL++L LG+  +      E+  D+   LS L+ L L+ N + SLP  + S L+
Sbjct: 445 QTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLT 504

Query: 252 RLRWLYLVNCVKLQSLPELPLL 273
            LR L L +  +L  L    L 
Sbjct: 505 ALRGLSLNSN-RLTVLSHNDLP 525

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 67.1 bits (164), Expect = 2e-12
 Identities = 49/274 (17%), Positives = 93/274 (33%), Gaps = 46/274 (16%)

Query: 62  LPNLETLEMSFCNSLKRL-STSICKLKSLRSLDLSY-CINLESFPEILEKMELLEEINLE 119
           L   E L +SF N ++ + ++S   L+ L+ L+L      L    E    +  L  ++L 
Sbjct: 23  LNTTERLLLSF-NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 120 EASNIKELPSSI-ENLEGLKQLKLTGC--TKLGSLPESLGNLKSLERLHAGLLAIPQAPS 176
             S I  L     + L  L +L+L  C  +          NLK+L RL            
Sbjct: 82  S-SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLD----------- 129

Query: 177 SIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDI---GCLSSLESL 233
             +  N++ +L         L P    L+SLK ++    +I  +           +L   
Sbjct: 130 --LSKNQIRSLY--------LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179

Query: 234 NLSGNNIESLP-------TSISQLSRLRWLYLVNCVKLQSLPELPLLLVMLGASDCKRLQ 286
           +L+ N++ S          +  +   L  L +       ++         +  S    L 
Sbjct: 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN--GWTVDITGNFSNAISKSQAFSLI 237

Query: 287 FLPELTS------CLEELDASILQALSNRTGERL 314
               +         +++ D +    L+  +   L
Sbjct: 238 LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHL 271

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 52/239 (21%), Positives = 89/239 (37%), Gaps = 17/239 (7%)

Query: 41  NVVELNLMCTPIEEVPLS---IECLPNLETLEMSFCNSLKRL--STSICKLKSLRSLDLS 95
           ++ EL L    + +  L       L  L  L++S  N ++ L    S  KL SL+S+D S
Sbjct: 98  HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK-NQIRSLYLHPSFGKLNSLKSIDFS 156

Query: 96  YCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESL 155
               +    E   ++E L+   L   S       S  +++  K +       L  L  S 
Sbjct: 157 SN-QIFLVCE--HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVS- 212

Query: 156 GNLKSLERLHAGLLAIPQ-APSSIVDLNKLETLSLFECRGLVLPP-LLSGL--SSLKKLE 211
           GN  +++       AI +    S++  + +                  +GL  SS++ L+
Sbjct: 213 GNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLD 272

Query: 212 LGDCEIMEIPPDI-GCLSSLESLNLSGNNIESLPTSI-SQLSRLRWLYLVNCVKLQSLP 268
           L    +  +   +   L  L+ LNL+ N I  +       L  L+ L L     L  L 
Sbjct: 273 LSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LLGELY 330

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 63.7 bits (155), Expect = 4e-11
 Identities = 44/199 (22%), Positives = 77/199 (38%), Gaps = 21/199 (10%)

Query: 88  SLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSI-ENLEGLKQLKLTGCT 146
             R     +C NL   P++L      E + L   + I+ + +S    LE L+ L+L    
Sbjct: 5   DGRIAFYRFC-NLTQVPQVLNT---TERLLLSF-NYIRTVTASSFPFLEQLQLLELGSQY 59

Query: 147 KLGSL-PESLGNLKSLERL---HAGLLAIPQAPSSIVDLNKLETLSLFECR---GLVLPP 199
              ++  E+  NL +L  L    + +  +   P +   L  L  L L+ C     ++   
Sbjct: 60  TPLTIDKEAFRNLPNLRILDLGSSKIYFLH--PDAFQGLFHLFELRLYFCGLSDAVLKDG 117

Query: 200 LLSGLSSLKKLELGDCEIMEIPPD--IGCLSSLESLNLSGNNIESLPTSI---SQLSRLR 254
               L +L +L+L   +I  +      G L+SL+S++ S N I  +        Q   L 
Sbjct: 118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLS 177

Query: 255 WLYLVNCVKLQSLPELPLL 273
           +  L     L S   +   
Sbjct: 178 FFSL-AANSLYSRVSVDWG 195

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 62.5 bits (152), Expect = 8e-11
 Identities = 44/228 (19%), Positives = 84/228 (36%), Gaps = 24/228 (10%)

Query: 41  NVVELNLMCTPIEEVPLSI-ECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCIN 99
            V  ++L    I  +     + L  L+TL++   N+L    T+I  + S+  + LS    
Sbjct: 339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD-NAL----TTIHFIPSIPDIFLSGN-K 392

Query: 100 LESFPEILEKMELLEEINLEEASNIKELP--SSIENLEGLKQLKLTGCTKLGSLPES--L 155
           L + P+I     L+          ++ L     +  +  L+ L L    +  S       
Sbjct: 393 LVTLPKINLTANLIHLSEN----RLENLDILYFLLRVPHLQILILNQN-RFSSCSGDQTP 447

Query: 156 GNLKSLERLH------AGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPP-LLSGLSSLK 208
               SLE+L                      L+ L+ L L       LPP + S L++L+
Sbjct: 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALR 507

Query: 209 KLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWL 256
            L L    +  +  +    ++LE L++S N + +    +     +  +
Sbjct: 508 GLSLNSNRLTVLSHND-LPANLEILDISRNQLLAPNPDVFVSLSVLDI 554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 59.8 bits (145), Expect = 5e-10
 Identities = 42/247 (17%), Positives = 76/247 (30%), Gaps = 38/247 (15%)

Query: 56  PLSIECLPNLETLEMSFCNSLKRLSTSI-CKLKSLRSLDLSYCINLESF---PEILEKME 111
             +   LPNL  L++   + +  L       L  L  L L +C  L            ++
Sbjct: 66  KEAFRNLPNLRILDLGS-SKIYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLK 123

Query: 112 LLEEINLEEASNIKELP--SSIENLEGLKQLKLTGCTKLGSLP-ESLGNLKSLE----RL 164
            L  ++L + + I+ L    S   L  LK +  +   ++  +    L  L+        L
Sbjct: 124 ALTRLDLSK-NQIRSLYLHPSFGKLNSLKSIDFSSN-QIFLVCEHELEPLQGKTLSFFSL 181

Query: 165 HAGLLAIPQAPSSIVDLNKLETLSL------------------FECRGLVLPPLLSGLSS 206
            A  L    +      +N    + L                             L     
Sbjct: 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241

Query: 207 LKKLELGDCEIMEIPPDI---GCLSSLESLNLSGNNIESLPTSI-SQLSRLRWLYLVNCV 262
           +     G   I +   +       SS+  L+LS   + SL + +   L  L+ L L    
Sbjct: 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN- 300

Query: 263 KLQSLPE 269
           K+  + +
Sbjct: 301 KINKIAD 307

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 74.4 bits (183), Expect = 7e-15
 Identities = 45/191 (23%), Positives = 84/191 (43%), Gaps = 16/191 (8%)

Query: 88  SLRSLDLSYCINLESFPE-ILEKMELLEEINLEEASNIKELPSSI-ENLEGLKQLKLTGC 145
           + R L+L     ++       + +  LE + L   ++I+ +       L  L  L+L   
Sbjct: 65  NTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSR-NHIRTIEIGAFNGLANLNTLELFDN 122

Query: 146 TKLGSLPE-SLGNLKSLERLHAG---LLAIPQAPSSIVDLNKLETLSLFECRGL-VLPP- 199
            +L ++P  +   L  L+ L      + +IP    +   +  L  L L E + L  +   
Sbjct: 123 -RLTTIPNGAFVYLSKLKELWLRNNPIESIP--SYAFNRIPSLRRLDLGELKRLSYISEG 179

Query: 200 LLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPT-SISQLSRLRWLYL 258
              GLS+L+ L L  C + EIP     L  L+ L+LSGN++ ++   S   L  L+ L++
Sbjct: 180 AFEGLSNLRYLNLAMCNLREIPNLTP-LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM 238

Query: 259 VNCVKLQSLPE 269
           +   ++Q +  
Sbjct: 239 IQS-QIQVIER 248

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 73.2 bits (180), Expect = 2e-14
 Identities = 54/215 (25%), Positives = 83/215 (38%), Gaps = 20/215 (9%)

Query: 62  LPNLETLEMSFCNSLKRLSTSI-CKLKSLRSLDLSYCINLESFPE-ILEKMELLEEINLE 119
           L NL TLE+   N L  +       L  L+ L L     +ES P     ++  L  ++L 
Sbjct: 111 LANLNTLELFD-NRLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLG 168

Query: 120 EASNIKELPSSI-ENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAG---LLAIPQAP 175
           E   +  +     E L  L+ L L  C  L  +P +L  L  L+ L      L AI   P
Sbjct: 169 ELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIP-NLTPLIKLDELDLSGNHLSAIR--P 224

Query: 176 SSIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIMEIPPDI-GCLSSLESL 233
            S   L  L+ L + + +  V+       L SL ++ L    +  +P D+   L  LE +
Sbjct: 225 GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERI 284

Query: 234 NLSGN------NIESLPTSISQLSRLRWLYLVNCV 262
           +L  N      +I  L   I  ++         C 
Sbjct: 285 HLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCN 319

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 74.0 bits (182), Expect = 1e-14
 Identities = 53/264 (20%), Positives = 90/264 (34%), Gaps = 26/264 (9%)

Query: 41  NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINL 100
            + +L      I  + LS     NL  L     N L  L   +  L  L  L+      L
Sbjct: 65  GLTKLICTSNNITTLDLSQ--NTNLTYLACDS-NKLTNLD--VTPLTKLTYLNCDTN-KL 118

Query: 101 ESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKS 160
                 + +  LL  +N    + + E+   + +   L +L      K+  L   +     
Sbjct: 119 TKLD--VSQNPLLTYLNCAR-NTLTEID--VSHNTQLTELDCHLNKKITKLD--VTPQTQ 171

Query: 161 LERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEI 220
           L  L      I +    +     L  L+        L   L+    L  L+    ++ EI
Sbjct: 172 LTTLDCSFNKITE--LDVSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEI 227

Query: 221 PPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPELPLL-LVMLGA 279
             D+  L+ L   + S N +  L   +S LS+L  L+ +    L  +       L+   A
Sbjct: 228 --DVTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQT-DLLEIDLTHNTQLIYFQA 282

Query: 280 SDCKRLQFLP--ELTSCLEELDAS 301
             C++++ L     T  L  LD  
Sbjct: 283 EGCRKIKELDVTHNTQ-LYLLDCQ 305

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 69.3 bits (170), Expect = 4e-13
 Identities = 46/225 (20%), Positives = 84/225 (37%), Gaps = 21/225 (9%)

Query: 44  ELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESF 103
            LN     + E+ +S      L  L+      +      +     L +LD S+   +   
Sbjct: 131 YLNCARNTLTEIDVS--HNTQLTELDCHLNKKIT--KLDVTPQTQLTTLDCSFN-KITEL 185

Query: 104 PEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLER 163
              + + +LL  +N +  +NI +L   +     L  L  +   KL  +   +  L  L  
Sbjct: 186 D--VSQNKLLNRLNCDT-NNITKLD--LNQNIQLTFLDCSSN-KLTEID--VTPLTQLTY 237

Query: 164 LHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPD 223
               +  + +   S   L+KL TL   +   L +   L+  + L   +   C  ++   D
Sbjct: 238 FDCSVNPLTELDVST--LSKLTTLHCIQTDLLEID--LTHNTQLIYFQAEGCRKIKEL-D 292

Query: 224 IGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLP 268
           +   + L  L+     I  L   +SQ  +L +LYL N  +L  L 
Sbjct: 293 VTHNTQLYLLDCQAAGITELD--LSQNPKLVYLYLNNT-ELTELD 334

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 67.8 bits (166), Expect = 1e-12
 Identities = 40/206 (19%), Positives = 71/206 (34%), Gaps = 16/206 (7%)

Query: 63  PNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEAS 122
            N  +   +        + S  +L +L SLD     ++     I EK+  L ++     +
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNS-SITDMTGI-EKLTGLTKLICTS-N 74

Query: 123 NIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLN 182
           NI  L   +     L  L      KL +L   +  L  L  L+     + +   S     
Sbjct: 75  NITTLD--LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTYLNCDTNKLTKLDVS--QNP 127

Query: 183 KLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIES 242
            L  L+        +   +S  + L +L+    + +    D+   + L +L+ S N I  
Sbjct: 128 LLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITK-LDVTPQTQLTTLDCSFNKITE 184

Query: 243 LPTSISQLSRLRWLYLVNCVKLQSLP 268
           L   +SQ   L  L       +  L 
Sbjct: 185 LD--VSQNKLLNRLNCDTN-NITKLD 207

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 38/220 (17%), Positives = 75/220 (34%), Gaps = 18/220 (8%)

Query: 41  NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINL 100
            +  LN     I ++ L+      L  L+ S  N L  +   +  L  L   D S    L
Sbjct: 192 LLNRLNCDTNNITKLDLN--QNIQLTFLDCSS-NKLTEID--VTPLTQLTYFDCSVN-PL 245

Query: 101 ESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKS 160
                 +  +  L  ++  + +++ E+   + +   L   +  GC K+  L   + +   
Sbjct: 246 TELD--VSTLSKLTTLHCIQ-TDLLEID--LTHNTQLIYFQAEGCRKIKELD--VTHNTQ 298

Query: 161 LERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEI 220
           L  L      I +    +    KL  L L       L   +S  + LK L   +  I + 
Sbjct: 299 LYLLDCQAAGITELD--LSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDF 354

Query: 221 PPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVN 260
              +G + +L +   +     ++P      + L      +
Sbjct: 355 SS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPD 393

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.5 bits (121), Expect = 4e-07
 Identities = 38/220 (17%), Positives = 68/220 (30%), Gaps = 28/220 (12%)

Query: 41  NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINL 100
            +  L+     + E+ ++   L  L   + S  N L  L   +  L  L +L      +L
Sbjct: 213 QLTFLDCSSNKLTEIDVT--PLTQLTYFDCS-VNPLTELD--VSTLSKLTTLHCIQT-DL 266

Query: 101 ESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKS 160
                 L     L     E    IKEL   + +   L  L       +  L   L     
Sbjct: 267 LEID--LTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAA-GITELD--LSQNPK 319

Query: 161 LERLHAG---LLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEI 217
           L  L+     L  +      +    KL++LS           +   + +L      + + 
Sbjct: 320 LVYLYLNNTELTELD-----VSHNTKLKSLSCVNAHIQDFSSV-GKIPALNNNFEAEGQT 373

Query: 218 MEIPPDIGCLSSL------ESLNLSGNNIESLPTSISQLS 251
           + +P +    +SL      + L+  GN +   P       
Sbjct: 374 ITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYD 413

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 27/138 (19%), Positives = 51/138 (36%), Gaps = 15/138 (10%)

Query: 170 AIPQAPSSIVDLNKLETLSLFECRGLVLPPL-LSGLSSLKKLELGDCEIMEIPPDIGCLS 228
              Q+ +     +   +             +    L++L  L+  +  I ++   I  L+
Sbjct: 6   GQTQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG-IEKLT 64

Query: 229 SLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPELPLLLVMLGASDCKRLQFL 288
            L  L  + NNI +L   +SQ + L +L   +      L  L +       +   +L +L
Sbjct: 65  GLTKLICTSNNITTLD--LSQNTNLTYLACDSN----KLTNLDV-------TPLTKLTYL 111

Query: 289 PELTSCLEELDASILQAL 306
              T+ L +LD S    L
Sbjct: 112 NCDTNKLTKLDVSQNPLL 129

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 72.5 bits (178), Expect = 2e-14
 Identities = 44/213 (20%), Positives = 91/213 (42%), Gaps = 19/213 (8%)

Query: 62  LPNLETLEMSFCNSLKRLSTSI-CKLKSLRSLDLSYCINLESFPE--ILEKMELLEEINL 118
           L +LE L++S+ N L  LS+S    L SL  L+L      ++  E  +   +  L+ + +
Sbjct: 99  LGSLEHLDLSY-NYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRV 156

Query: 119 EEASNIKELPSSI-ENLEGLKQLKLTGCTKLGSLP-ESLGNLKSLERLHAGLLAIPQAPS 176
                  ++       L  L++L++     L S   +SL +++++  L   +        
Sbjct: 157 GNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQHILLLE 215

Query: 177 SIVD-LNKLETLSLFE-----CRGLVLPPL----LSGLSSLKKLELGDCEIMEIPPDIGC 226
             VD  + +E L L +          L       L    + + +++ D  + ++   +  
Sbjct: 216 IFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ 275

Query: 227 LSSLESLNLSGNNIESLPTSI-SQLSRLRWLYL 258
           +S L  L  S N ++S+P  I  +L+ L+ ++L
Sbjct: 276 ISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWL 308

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 71.2 bits (175), Expect = 6e-14
 Identities = 45/233 (19%), Positives = 94/233 (40%), Gaps = 21/233 (9%)

Query: 41  NVVELNLMCTPIEEV-PLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCIN 99
           ++  L L+   I ++   +   L  L+ L +S  N L  +  ++    SL  L +     
Sbjct: 79  HLYALVLVNNKISKIHEKAFSPLRKLQKLYISK-NHLVEIPPNL--PSSLVELRIHDN-R 134

Query: 100 LESFPE-ILEKMELLEEINLEEASNIKELPSSIENLEGLK--QLKLTGCTKLGSLPESLG 156
           +   P+ +   +  +  I +   + ++         +GLK   L+++   KL  +P+ L 
Sbjct: 135 IRKVPKGVFSGLRNMNCIEMGG-NPLENSGFEPGAFDGLKLNYLRISEA-KLTGIPKDL- 191

Query: 157 NLKSLERLHAGLLAIPQ-APSSIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGD 214
             ++L  LH     I       ++  +KL  L L   +  ++    LS L +L++L L +
Sbjct: 192 -PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN 250

Query: 215 CEIMEIPPDIGCLSSLESLNLSGNNIESLP-------TSISQLSRLRWLYLVN 260
            ++  +P  +  L  L+ + L  NNI  +            + +    + L N
Sbjct: 251 NKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN 303

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 52.3 bits (126), Expect = 9e-08
 Identities = 39/183 (21%), Positives = 63/183 (34%), Gaps = 33/183 (18%)

Query: 123 NIKELPSSIENLEGLKQLKLTGCTKLGSLPE-SLGNLKSLERLHAGLLAIPQAPSSIVDL 181
            +K +P  I        L L     +  L +     L+ L  L              +  
Sbjct: 44  GLKAVPKEI--SPDTTLLDLQN-NDISELRKDDFKGLQHLYALV-------------LVN 87

Query: 182 NKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIE 241
           NK+  +              S L  L+KL +    ++EIPP++   SSL  L +  N I 
Sbjct: 88  NKISKIH---------EKAFSPLRKLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIR 136

Query: 242 SLPTSI-SQLSRLRWLYLV-NCVKLQSLPE---LPLLLVMLGASDCKRLQFLPELTSCLE 296
            +P  + S L  +  + +  N ++           L L  L  S+ K      +L   L 
Sbjct: 137 KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLN 196

Query: 297 ELD 299
           EL 
Sbjct: 197 ELH 199

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 41/213 (19%), Positives = 79/213 (37%), Gaps = 21/213 (9%)

Query: 41  NVVELNLMCTPIEEVPLSI-ECLPNLETLEMSFCNSLKR--LSTSICKLKSLRSLDLSYC 97
           ++VEL +    I +VP  +   L N+  +EM   N L+             L  L +S  
Sbjct: 124 SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGG-NPLENSGFEPGAFDGLKLNYLRISEA 182

Query: 98  INLESFPEILEKMELLEEINLEEASNIKELPS-SIENLEGLKQLKLTGCTKLGSLPE-SL 155
             L   P+ L   E L E++L+  + I+ +    +     L +L L    ++  +   SL
Sbjct: 183 -KLTGIPKDL--PETLNELHLDH-NKIQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSL 237

Query: 156 GNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPP-------LLSGLSSLK 208
             L +L  LH     + + P+ + DL  L+ + L       +              +   
Sbjct: 238 SFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYN 297

Query: 209 KLELGDCEI--MEIPPDI-GCLSSLESLNLSGN 238
            + L +  +   E+ P    C++   ++     
Sbjct: 298 GISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 72.1 bits (176), Expect = 6e-14
 Identities = 42/236 (17%), Positives = 83/236 (35%), Gaps = 12/236 (5%)

Query: 53  EEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMEL 112
           +     I    + +   +   +  +         + L   +LS           LE  + 
Sbjct: 315 QHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELS-VEKSTVLQSELESCKE 373

Query: 113 LEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIP 172
           L+E+  E    +  +   +  L+ L   K        +L +++  +++          + 
Sbjct: 374 LQELEPENKWCLLTIILLMRALDPLLYEK-ETLQYFSTL-KAVDPMRAAYLDDLRSKFLL 431

Query: 173 QAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLES 232
           +     ++   +  L L     L +   L  L  +  L+L    +  +PP +  L  LE 
Sbjct: 432 ENSVLKMEYADVRVLHLAHKD-LTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEV 490

Query: 233 LNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPELPLLLVMLGASDCKRLQFL 288
           L  S N +E++   ++ L RL+ L L N  +LQ    +  L        C RL  L
Sbjct: 491 LQASDNALENVD-GVANLPRLQELLLCNN-RLQQSAAIQPL------VSCPRLVLL 538

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 70.5 bits (173), Expect = 6e-14
 Identities = 41/221 (18%), Positives = 92/221 (41%), Gaps = 16/221 (7%)

Query: 85  KLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTG 144
            L +   +      +  +       ++ +  ++    + +  +   ++ L  L  L+L  
Sbjct: 17  ALANAIKIAAGK--SNVTDTVTQADLDGITTLSAFG-TGVTTI-EGVQYLNNLIGLELKD 72

Query: 145 CTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGL 204
             ++  L   L NL  +  L      + +  S+I  L  ++TL L   +   + PL +GL
Sbjct: 73  N-QITDLAP-LKNLTKITELELSGNPL-KNVSAIAGLQSIKTLDLTSTQITDVTPL-AGL 128

Query: 205 SSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKL 264
           S+L+ L L   +I  I P +  L++L+ L++    +  L   ++ LS+L  L   +  K+
Sbjct: 129 SNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDN-KI 185

Query: 265 QSLPELPLL--LVMLGASDCK--RLQFLPELTSCLEELDAS 301
             +  L  L  L+ +   + +   +  L   ++ L  +  +
Sbjct: 186 SDISPLASLPNLIEVHLKNNQISDVSPLANTSN-LFIVTLT 225

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.0 bits (164), Expect = 1e-12
 Identities = 42/209 (20%), Positives = 97/209 (46%), Gaps = 12/209 (5%)

Query: 41  NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINL 100
            +  L+   T +  +   ++ L NL  LE+   N +  L+  +  L  +  L+LS    L
Sbjct: 42  GITTLSAFGTGVTTIE-GVQYLNNLIGLELKD-NQITDLA-PLKNLTKITELELSGN-PL 97

Query: 101 ESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKS 160
           ++    +  ++ ++ ++L   + I ++ + +  L  L+ L L    ++ ++   L  L +
Sbjct: 98  KNVSA-IAGLQSIKTLDLTS-TQITDV-TPLAGLSNLQVLYL-DLNQITNI-SPLAGLTN 152

Query: 161 LERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEI 220
           L+ L  G   +    + + +L+KL TL   + +   + PL + L +L ++ L + +I ++
Sbjct: 153 LQYLSIGNAQV-SDLTPLANLSKLTTLKADDNKISDISPL-ASLPNLIEVHLKNNQISDV 210

Query: 221 PPDIGCLSSLESLNLSGNNIESLPTSISQ 249
            P +   S+L  + L+   I + P   + 
Sbjct: 211 SP-LANTSNLFIVTLTNQTITNQPVFYNN 238

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.9 bits (148), Expect = 1e-10
 Identities = 51/210 (24%), Positives = 91/210 (43%), Gaps = 15/210 (7%)

Query: 41  NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINL 100
           N++ L L    I ++   ++ L  +  LE+S  N LK +S +I  L+S+++LDL+     
Sbjct: 64  NLIGLELKDNQITDLA-PLKNLTKITELELSG-NPLKNVS-AIAGLQSIKTLDLTS--TQ 118

Query: 101 ESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKS 160
            +    L  +  L+ + L+  + I  + S +  L  L+ L + G  ++  L   L NL  
Sbjct: 119 ITDVTPLAGLSNLQVLYLDL-NQITNI-SPLAGLTNLQYLSI-GNAQVSDL-TPLANLSK 174

Query: 161 LERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEI 220
           L  L A    I    S +  L  L  + L   +   + PL +  S+L  + L +  I   
Sbjct: 175 LTTLKADDNKISDI-SPLASLPNLIEVHLKNNQISDVSPL-ANTSNLFIVTLTNQTITNQ 232

Query: 221 PPDIGCLSSLESLNLSGNNIESL--PTSIS 248
           P      ++L   N+      +   P +IS
Sbjct: 233 PVFY--NNNLVVPNVVKGPSGAPIAPATIS 260

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 71.7 bits (176), Expect = 7e-14
 Identities = 37/204 (18%), Positives = 80/204 (39%), Gaps = 15/204 (7%)

Query: 62  LPNLETLEMSFCNSLKRLSTSICK-LKSLRSLDLSY-CINLESF--PEILEKMELLEEIN 117
           L  ++ + +   + +  +  S  + LKSL  LDLS   +  E             L+ + 
Sbjct: 309 LEKVKRITVEN-SKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV 367

Query: 118 LEEA--SNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAP 175
           L +    ++++    +  L+ L  L ++       +P+S    + +  L+     I    
Sbjct: 368 LSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSSTGIRVVK 426

Query: 176 SSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNL 235
           + I     LE L +              L  L++L +   ++  +P        L  + +
Sbjct: 427 TCI--PQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLPDA-SLFPVLLVMKI 480

Query: 236 SGNNIESLPTSI-SQLSRLRWLYL 258
           S N ++S+P  I  +L+ L+ ++L
Sbjct: 481 SRNQLKSVPDGIFDRLTSLQKIWL 504

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 69.8 bits (171), Expect = 3e-13
 Identities = 48/265 (18%), Positives = 91/265 (34%), Gaps = 36/265 (13%)

Query: 41  NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINL 100
            ++   L  + +E    ++  L +    E    + L ++ T      ++R L +      
Sbjct: 245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETV-----TIRRLHIPQFYLF 299

Query: 101 ESFPEILEKMELLEEINLEEASNIKELPSSI-ENLEGLKQLKLTGC---TKLGSLPESLG 156
                +   +E ++ I +E  S +  +P S  ++L+ L+ L L+      +        G
Sbjct: 300 YDLSTVYSLLEKVKRITVEN-SKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKG 358

Query: 157 NLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCE 216
              SL+ L              +  N L ++            +L  L +L  L++    
Sbjct: 359 AWPSLQTLV-------------LSQNHLRSMQ-------KTGEILLTLKNLTSLDISRNT 398

Query: 217 IMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPELPLLLVM 276
              +P        +  LNLS   I  + T I     L  L + N   L S       L  
Sbjct: 399 FHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNN-NLDSFSLFLPRLQE 455

Query: 277 LGASDCKRLQFLPELTSC--LEELD 299
           L  S   +L+ LP+ +    L  + 
Sbjct: 456 LYISRN-KLKTLPDASLFPVLLVMK 479

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 66.3 bits (162), Expect = 4e-12
 Identities = 48/269 (17%), Positives = 91/269 (33%), Gaps = 18/269 (6%)

Query: 52  IEEVPLSIECLPNLETLEMSFCNSLKRL-STSICKLKSLRSLDLSYCINLESFPEILEKM 110
              +P  +     +++L++SF N +  +    +    +L+ L L          +    +
Sbjct: 17  FTSIPSGL--TAAMKSLDLSF-NKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSL 73

Query: 111 ELLEEINLEEASNIKELPSS-IENLEGLKQLKLTGCTKLGSLPES--LGNLKSLERLH-A 166
             LE ++L + +++  L SS    L  LK L L G     +L  +    NL +L+ L   
Sbjct: 74  GSLEHLDLSD-NHLSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIG 131

Query: 167 GLLAIPQ-APSSIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIMEIPPDI 224
            +    +        L  L  L +            L  +  +  L L   E   +    
Sbjct: 132 NVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIF 191

Query: 225 -GCLSSLESLNLSGNNIESLPTSI----SQLSRLRWLYLVNCVKLQSLPELPLLLVMLGA 279
              LSS+  L L   N+     S        S ++ L       L       LL ++   
Sbjct: 192 ADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG-SVLTDESFNELLKLLRYI 250

Query: 280 SDCKRLQFLPELTSCLEELDASILQALSN 308
            +   ++F     + L + + S    +S 
Sbjct: 251 LELSEVEFDDCTLNGLGDFNPSESDVVSE 279

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 65.5 bits (160), Expect = 8e-12
 Identities = 39/246 (15%), Positives = 88/246 (35%), Gaps = 31/246 (12%)

Query: 41  NVVELNLMCTPIEEVPLS--IECLPNLETLEMSFCNSLKRLS-TSICKLKSLRSLDLSYC 97
           ++  LNLM  P + + ++     L NL+TL +    +   +       L SL  L++   
Sbjct: 99  SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158

Query: 98  INLESF-PEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESL- 155
            +L ++  + L+ +  +  + L  + +   L    + L  ++ L+L   T L     S  
Sbjct: 159 -SLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR-DTNLARFQFSPL 216

Query: 156 ---------------------GNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRG 194
                                 +   L +L   +L + +       LN L   +  E   
Sbjct: 217 PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDV 276

Query: 195 LVLPPLLSGLSSLKKLELGDCEIMEIPPDIGC-LSSLESLNLSGNNIESLPTSI-SQLSR 252
           +     +    ++++L +    +      +   L  ++ + +  + +  +P S    L  
Sbjct: 277 VSELGKVE-TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKS 335

Query: 253 LRWLYL 258
           L +L L
Sbjct: 336 LEFLDL 341

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 64.7 bits (158), Expect = 1e-11
 Identities = 38/242 (15%), Positives = 79/242 (32%), Gaps = 15/242 (6%)

Query: 41  NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICK-LKSLRSLDLSYCI 98
           ++ EL +    +      S++ + ++  L +   +    L       L S+R L+L    
Sbjct: 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL-SESAFLLEIFADILSSVRYLELRDTN 207

Query: 99  NLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNL 158
                   L   E+   +             S   L  L +  L    +L  +      L
Sbjct: 208 LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYIL----ELSEVEFDDCTL 263

Query: 159 KSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEI 217
             L   +     +      +  +  +  L + +         + S L  +K++ + + ++
Sbjct: 264 NGLGDFNPSESDVVSELGKVETVT-IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV 322

Query: 218 MEIPPDIG-CLSSLESLNLSGNNIESL----PTSISQLSRLRWLYLVNCVKLQSLPELPL 272
             +P      L SLE L+LS N +                L+ L L     L+S+ +   
Sbjct: 323 FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGE 381

Query: 273 LL 274
           +L
Sbjct: 382 IL 383

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 64.0 bits (156), Expect = 3e-11
 Identities = 46/220 (20%), Positives = 90/220 (40%), Gaps = 17/220 (7%)

Query: 41  NVVELNLMCTPIEEVPLSI-ECLPNLETLEMSFCNSLKRL----STSICKLKSLRSLDLS 95
            V  + +  + +  VP S  + L +LE L++S  N +       S       SL++L LS
Sbjct: 311 KVKRITVENSKVFLVPCSFSQHLKSLEFLDLSE-NLMVEEYLKNSACKGAWPSLQTLVLS 369

Query: 96  YC--INLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPE 153
                +++   EIL  ++ L  +++   +    +P S +  E ++ L L+    +  +  
Sbjct: 370 QNHLRSMQKTGEILLTLKNLTSLDISR-NTFHPMPDSCQWPEKMRFLNLSST-GIRVVKT 427

Query: 154 SLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELG 213
                ++LE L      +         L +L+ L +   +   LP   S    L  +++ 
Sbjct: 428 --CIPQTLEVLDVSNNNLDSFSL---FLPRLQELYISRNKLKTLPDA-SLFPVLLVMKIS 481

Query: 214 DCEIMEIPPDI-GCLSSLESLNLSGNNIESLPTSISQLSR 252
             ++  +P  I   L+SL+ + L  N  +     I  LSR
Sbjct: 482 RNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 521

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 67.4 bits (165), Expect = 7e-13
 Identities = 54/227 (23%), Positives = 94/227 (41%), Gaps = 36/227 (15%)

Query: 44  ELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESF 103
           E   + TPI+++  S +         +    S+    T   +L S+  +  +        
Sbjct: 6   ETITVPTPIKQIF-SDDAFAETIKDNLKK-KSVTDAVT-QNELNSIDQIIANNS------ 56

Query: 104 PEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLER 163
                              +IK +   I+ L  + +L L G  KL  + + L NLK+L  
Sbjct: 57  -------------------DIKSV-QGIQYLPNVTKLFLNG-NKLTDI-KPLANLKNLGW 94

Query: 164 LHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPD 223
           L      +    SS+ DL KL++LSL       +  L   L  L+ L LG+ +I +I   
Sbjct: 95  LFLDENKVKDL-SSLKDLKKLKSLSLEHNGISDINGL-VHLPQLESLYLGNNKITDITV- 151

Query: 224 IGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPEL 270
           +  L+ L++L+L  N I  +   ++ L++L+ LYL     +  L  L
Sbjct: 152 LSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKN-HISDLRAL 196

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 46/243 (18%), Positives = 91/243 (37%), Gaps = 28/243 (11%)

Query: 82  SICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPS-SIENLEGLKQL 140
             C+        ++ C +++  P +       + + L E ++++ +PS +  NL  + ++
Sbjct: 6   PPCECHQEEDFRVT-CKDIQRIPSLPPS---TQTLKLIE-THLRTIPSHAFSNLPNISRI 60

Query: 141 KLTGCTKLGSLPE-SLGNLKSLERLH----AGLLAIPQAPSSIVDLNKLETLSLFECRGL 195
            ++    L  L   S  NL  +  +       L  I   P ++ +L  L+ L +F     
Sbjct: 61  YVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID--PDALKELPLLKFLGIFNTGLK 118

Query: 196 VLPPL--LSGLSSLKKLELGD-CEIMEIPPDI--GCLSSLESLNLSGNNIESLPTSISQL 250
           + P L  +        LE+ D   +  IP +   G  +   +L L  N   S+       
Sbjct: 119 MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG 178

Query: 251 SRLRWLYLVNCVKLQSLPE-----LPLLLVMLGASDCKRLQFLPELTSCLEELDASILQA 305
           ++L  +YL     L  + +     +     +L  S    +  LP  +  LE L    L A
Sbjct: 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALP--SKGLEHLKE--LIA 233

Query: 306 LSN 308
            + 
Sbjct: 234 RNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 42/247 (17%), Positives = 93/247 (37%), Gaps = 35/247 (14%)

Query: 23  KIDCYKCVNLREFPRISGNVVELNLMCTPIEEVP-LSIECLPNLETLEMSFCNSLKRLST 81
                 C +++  P +  +   L L+ T +  +P  +   LPN+  + +S   +L++L +
Sbjct: 15  DFRVT-CKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLES 73

Query: 82  SI-CKLKSLRSLDLSYCINLESFP-EILEKMELLEEINLEEASNIKELP--SSIENLEGL 137
                L  +  +++    NL     + L+++ LL+ + +   + +K  P  + + + +  
Sbjct: 74  HSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFN-TGLKMFPDLTKVYSTDIF 132

Query: 138 KQLKLTGCTKLGSLPE-SLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLV 196
             L++T    + S+P  +   L +                         TL L+      
Sbjct: 133 FILEITDNPYMTSIPVNAFQGLCNE----------------------TLTLKLYNNGFTS 170

Query: 197 LPPLLSGLSSLKKLELGDC-EIMEIPPDI--GCLSSLESLNLSGNNIESLPTSISQLSRL 253
           +       + L  + L     +  I  D   G  S    L++S  ++ +LP+    L  L
Sbjct: 171 VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKG--LEHL 228

Query: 254 RWLYLVN 260
           + L   N
Sbjct: 229 KELIARN 235

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 65.0 bits (159), Expect = 4e-12
 Identities = 51/211 (24%), Positives = 88/211 (41%), Gaps = 18/211 (8%)

Query: 63  PNLETLEMSFCNSLKRL-STSICKLKSLRSLDLSYCINLESFPE-ILEKMELLEEINLEE 120
            + + L++SF N L+ L S S      L+ LDLS C  +++  +   + +  L  + L  
Sbjct: 28  FSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTG 85

Query: 121 ASNIKELPSSI-ENLEGLKQLKLTGCTKLGSLPESL-GNLKSLERLHAG---LLAIPQAP 175
              I+ L       L  L++L       L SL     G+LK+L+ L+     + +    P
Sbjct: 86  N-PIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKL-P 142

Query: 176 SSIVDLNKLETLSLFECRGLVLPP-LLSGLSSLK----KLELGDCEIMEIPPDIGCLSSL 230
               +L  LE L L   +   +    L  L  +      L+L    +  I P       L
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 202

Query: 231 ESLNLSGNNIESLPTSI-SQLSRLRWLYLVN 260
           + L L  N ++S+P  I  +L+ L+ ++L  
Sbjct: 203 KELALDTNQLKSVPDGIFDRLTSLQKIWLHT 233

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.4 bits (142), Expect = 5e-10
 Identities = 35/112 (31%), Positives = 42/112 (37%), Gaps = 17/112 (15%)

Query: 167 GLLAIPQA-PSSIVDL----NKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIP 221
               IP   P S  +L    N L  L                   L+ L+L  CEI  I 
Sbjct: 18  NFYKIPDNLPFSTKNLDLSFNPLRHLG---------SYSFFSFPELQVLDLSRCEIQTIE 68

Query: 222 PDI-GCLSSLESLNLSGNNIESLPTSI-SQLSRLRWLYLVNCVKLQSLPELP 271
                 LS L +L L+GN I+SL     S LS L+ L  V    L SL   P
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFP 119

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 41/183 (22%), Positives = 74/183 (40%), Gaps = 29/183 (15%)

Query: 62  LPNLETLEMSFCNSLKRLSTSI-CKLKSLRSLDLSYCINLESFPE-ILEKMELLEEINLE 119
           L +L TL ++  N ++ L+      L SL+ L      NL S     +  ++ L+E+N+ 
Sbjct: 75  LSHLSTLILT-GNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVA 132

Query: 120 EASNIKELPSS--IENLEGLKQLKLTGCTKLGSLPE-SLGNLKSLERLHAGLLAIPQAPS 176
             + I+         NL  L+ L L+   K+ S+    L  L  +  L+  L        
Sbjct: 133 H-NLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLD------- 183

Query: 177 SIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDI-GCLSSLESLNL 235
             + LN +  +     + +           LK+L L   ++  +P  I   L+SL+ + L
Sbjct: 184 --LSLNPMNFIQPGAFKEI----------RLKELALDTNQLKSVPDGIFDRLTSLQKIWL 231

Query: 236 SGN 238
             N
Sbjct: 232 HTN 234

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 64.8 bits (158), Expect = 1e-11
 Identities = 48/263 (18%), Positives = 96/263 (36%), Gaps = 36/263 (13%)

Query: 41  NVVELNLMCTPIEEVPLSIEC---LPNLETLEMSFCNSLKRLS--TSICKLKSLRSLDLS 95
           N+  L L    ++   LS      L +LE L +   N++K++   +    ++    LDL+
Sbjct: 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD-NNIKKIQPASFFLNMRRFHVLDLT 162

Query: 96  Y----CINLESF----PEILEKMELLEEI--NLEEASNIKELPSSIENLEGLKQLKLTGC 145
           +     I  E       +    + L      ++ E     E   +      +  L L+G 
Sbjct: 163 FNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN 222

Query: 146 TKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPL----- 200
               S+ +   +  +  ++ + +L+      S       +    F  +GL    +     
Sbjct: 223 GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDL 282

Query: 201 ------------LSGLSSLKKLELGDCEIMEIPPDI-GCLSSLESLNLSGNNIESLPTSI 247
                        S  + L++L L   EI +I  +    L+ L  LNLS N + S+ + +
Sbjct: 283 SKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRM 342

Query: 248 -SQLSRLRWLYLVNCVKLQSLPE 269
              L +L  L L     +++L +
Sbjct: 343 FENLDKLEVLDLSYN-HIRALGD 364

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 10/131 (7%)

Query: 137 LKQLKLTGCTKLGSLPE-SLGNLKSLERLHAGLLAIPQAPSSIV--DLNKLETLSLFECR 193
           +  + L+    +  L E S   L+ L+ L            +     L+ L  L L   +
Sbjct: 32  VNYVDLSL-NSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 194 GLVLPP-LLSGLSSLKKLELGDCEI--MEIPPDI-GCLSSLESLNLSGNNIESLP--TSI 247
            L L     +GL++L+ L L  C +    +  +    L+SLE L L  NNI+ +   +  
Sbjct: 91  FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150

Query: 248 SQLSRLRWLYL 258
             + R   L L
Sbjct: 151 LNMRRFHVLDL 161

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 50.5 bits (121), Expect = 4e-07
 Identities = 40/220 (18%), Positives = 84/220 (38%), Gaps = 23/220 (10%)

Query: 62  LPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSY----CINLESFPEILEKMELLEEIN 117
           L ++   +M+          +  K  S+ +LDLS         + F + +   ++   I 
Sbjct: 187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246

Query: 118 LEEASNIKELPSSI------ENLEGLKQLKLTGC----TKLGSLPESL-GNLKSLERLHA 166
               +       +          +GL+   +  C    +K+ +L +S+  +   LE+L  
Sbjct: 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTL 306

Query: 167 G---LLAIPQAPSSIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIMEIPP 222
               +  I    ++   L  L  L+L +     +   +   L  L+ L+L    I  +  
Sbjct: 307 AQNEINKID--DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD 364

Query: 223 DI-GCLSSLESLNLSGNNIESLPTSI-SQLSRLRWLYLVN 260
                L +L+ L L  N ++S+P  I  +L+ L+ ++L  
Sbjct: 365 QSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 404

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 44/203 (21%), Positives = 72/203 (35%), Gaps = 19/203 (9%)

Query: 44  ELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESF 103
            L+L     +E            T   S   S      S     + +  D      LE+ 
Sbjct: 216 TLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEAS 275

Query: 104 PEILEKMELLEEINLEEASNIKELPSSI-ENLEGLKQLKLTGCTKLGSLPE----SLGNL 158
                    ++  +L + S I  L  S+  +   L+QL L    ++  + +     L +L
Sbjct: 276 G--------VKTCDLSK-SKIFALLKSVFSHFTDLEQLTLAQ-NEINKIDDNAFWGLTHL 325

Query: 159 KSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEI 217
             L      L +I        +L+KLE L L       L      GL +LK+L L   ++
Sbjct: 326 LKLNLSQNFLGSID--SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383

Query: 218 MEIPPDI-GCLSSLESLNLSGNN 239
             +P  I   L+SL+ + L  N 
Sbjct: 384 KSVPDGIFDRLTSLQKIWLHTNP 406

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 17/111 (15%)

Query: 165 HAGLLAIPQAPSSIVDL----NKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEI 220
           + GL  +P+ P+ +  +    N +  L+             S L  L+ L++       +
Sbjct: 19  NRGLHQVPELPAHVNYVDLSLNSIAELN---------ETSFSRLQDLQFLKVEQQTPGLV 69

Query: 221 PPDIGC--LSSLESLNLSGNNIESLPTSI-SQLSRLRWLYLVNCVKLQSLP 268
             +     LSSL  L L  N    L T   + L+ L  L L  C  L    
Sbjct: 70  IRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQC-NLDGAV 119

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 46/275 (16%), Positives = 76/275 (27%), Gaps = 77/275 (28%)

Query: 24  IDCYKCVNLREFPRISGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSI 83
             C     L + P +  +V  ++L    I E+                         TS 
Sbjct: 15  AICINR-GLHQVPELPAHVNYVDLSLNSIAELN-----------------------ETSF 50

Query: 84  CKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLT 143
            +L+ L+ L +                                  ++   L  L  LKL 
Sbjct: 51  SRLQDLQFLKVEQQTPGLVIR-----------------------NNTFRGLSSLIILKLD 87

Query: 144 GCTKLGSLPES-LGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLS 202
              +   L       L +LE L              +    L+   L             
Sbjct: 88  Y-NQFLQLETGAFNGLANLEVLT-------------LTQCNLDGAVL-------SGNFFK 126

Query: 203 GLSSLKKLELGDCEIMEIPPDI--GCLSSLESLNLSGNNIESLPTSI---SQLSRLRWLY 257
            L+SL+ L L D  I +I P      +     L+L+ N ++S+        Q      L 
Sbjct: 127 PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR 186

Query: 258 LVNCVKLQSLPELPLLLVMLGASDCKRLQFLPELT 292
           L + + LQ + E  L     G     +   +  L 
Sbjct: 187 L-SSITLQDMNEYWLGWEKCGNPF--KNTSITTLD 218

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.6 bits (159), Expect = 1e-11
 Identities = 60/414 (14%), Positives = 132/414 (31%), Gaps = 103/414 (24%)

Query: 17  HFISSIKIDCYKCVNLREFPR--ISGNVVELNLMCTP--IEEVPLSIECL--PNLETLEM 70
            F  +   + + C ++++ P+  +S   ++ +++ +   +         L     E ++ 
Sbjct: 24  VFEDAFVDN-FDCKDVQDMPKSILSKEEID-HIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81

Query: 71  SFCNSLKR----LSTSI---CKLKSLRSLDLSYCIN-LESFPEILEKMEL--LEEI-NLE 119
                L+     L + I    +  S+ +       + L +  ++  K  +  L+    L 
Sbjct: 82  FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR 141

Query: 120 EASNIKEL-PSSIENLEGL----KQ----------------------LKLTGCTKLGSLP 152
           +A  + EL P+    ++G+    K                       L L  C    ++ 
Sbjct: 142 QA--LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199

Query: 153 ESLGNL-----KSLERLHAGLLAIPQAPSSIVD-LNKLETLSLFECRGLVLPPLLSGLSS 206
           E L  L      +          I     SI   L +L     +E   L++   L  + +
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE-NCLLV---LLNVQN 255

Query: 207 ---LKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQ---LSRL-RWLYLV 259
                   L  C+I+           L +   +  +++    +++     S L ++L   
Sbjct: 256 AKAWNAFNLS-CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL--- 311

Query: 260 NCVKLQSLPE-----LPLLLVMLGAS---DCKRLQFLPELT---------SCLEELDASI 302
           +C + Q LP       P  L ++  S             +          S L  L+ + 
Sbjct: 312 DC-RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370

Query: 303 LQALSNRTGERLSKHMSPVQLIFANCLKLNES----IWADLQKRIRHMIIASLR 352
            + +     +RLS        +F     +       IW D+ K    +++  L 
Sbjct: 371 YRKMF----DRLS--------VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 61.7 bits (150), Expect = 6e-11
 Identities = 46/203 (22%), Positives = 80/203 (39%), Gaps = 9/203 (4%)

Query: 61  CLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE 120
            + +   +      +L  L   +   K    L LS  +        L     L ++NL+ 
Sbjct: 8   KVASHLEVNCDK-RNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 121 ASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVD 180
            + + +L      L  L  L L+   +L SLP     L +L  L      +   P   + 
Sbjct: 65  -AELTKLQVD-GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 181 -LNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIMEIPPDI-GCLSSLESLNLSG 237
            L +L+ L L       LPP LL+    L+KL L +  + E+P  +   L +L++L L  
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 238 NNIESLPTSISQLSRLRWLYLVN 260
           N++ ++P        L + +L  
Sbjct: 182 NSLYTIPKGFFGSHLLPFAFLHG 204

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 59.3 bits (144), Expect = 3e-10
 Identities = 32/125 (25%), Positives = 50/125 (40%), Gaps = 6/125 (4%)

Query: 147 KLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVD-LNKLETLSLFECRGLVLPPLLSGLS 205
            L +LP  L   K    LH     +     + +    +L  L+L       L      L 
Sbjct: 21  NLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLP 77

Query: 206 SLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSI-SQLSRLRWLYLVNCVKL 264
            L  L+L   ++  +P     L +L  L++S N + SLP      L  L+ LYL    +L
Sbjct: 78  VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-EL 136

Query: 265 QSLPE 269
           ++LP 
Sbjct: 137 KTLPP 141

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.4 bits (126), Expect = 7e-08
 Identities = 51/207 (24%), Positives = 81/207 (39%), Gaps = 17/207 (8%)

Query: 39  SGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSI-CKLKSLRSLDLSYC 97
             + +E+N     +  +P  +    +   L +S  N L   S +       L  L+L   
Sbjct: 9   VASHLEVNCDKRNLTALPPDL--PKDTTILHLSE-NLLYTFSLATLMPYTRLTQLNLDR- 64

Query: 98  INLESFPEILEKMELLEEINLEEASN-IKELPSSIENLEGLKQLKLTGCTKLGSLPE--- 153
               +  ++   + +L  ++L    N ++ LP   + L  L  L ++   +L SLP    
Sbjct: 65  -AELTKLQVDGTLPVLGTLDLS--HNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGAL 120

Query: 154 -SLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLE 211
             LG L+ L      L  +P  P  +    KLE LSL       LP  LL+GL +L  L 
Sbjct: 121 RGLGELQELYLKGNELKTLP--PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 212 LGDCEIMEIPPDIGCLSSLESLNLSGN 238
           L +  +  IP        L    L GN
Sbjct: 179 LQENSLYTIPKGFFGSHLLPFAFLHGN 205

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 61.8 bits (150), Expect = 1e-10
 Identities = 58/327 (17%), Positives = 111/327 (33%), Gaps = 38/327 (11%)

Query: 30  VNLREFPRIS-GNVVELNLMCTPIEEVPLSIECLPNLETLEMSFC----NSLKRLSTSIC 84
           V L+  P  +  N+V           +         LE + +       + L+ ++ S  
Sbjct: 71  VELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKS-- 128

Query: 85  KLKSLRSLDLSYCINL--ESFPEILEKMELLEEINLEEASNIKELPSSI----ENLEGLK 138
             K+ + L LS C     +    I      L+E++L E+         +    +    L 
Sbjct: 129 -FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLV 187

Query: 139 QLKLTGCTKL---GSLPESLGNLKSLERLH-AGLLAIPQAPSSIVDLNKLETLSLFECRG 194
            L ++         +L   +    +L+ L     + + +  + +    +LE L       
Sbjct: 188 SLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTA 247

Query: 195 LVLPPLLSGLSSL--KKLELGDCEIMEIPPDIG------CLSSLESLNLSGNNI--ESLP 244
            V P + SGLS       EL                     S L +LNLS   +    L 
Sbjct: 248 EVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLV 307

Query: 245 TSISQLSRLRWLYLVNCVKLQSLPELPLLLVMLGASDCKRLQFLPELTSCLEELDASILQ 304
             + Q  +L+ L++++ ++   L  L        AS CK L+ L  +    E        
Sbjct: 308 KLLCQCPKLQRLWVLDYIEDAGLEVL--------ASTCKDLREL-RVFPS-EPFVMEPNV 357

Query: 305 ALSNRTGERLSKHMSPVQLIFANCLKL 331
           AL+ +    +S     ++ +   C ++
Sbjct: 358 ALTEQGLVSVSMGCPKLESVLYFCRQM 384

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 61.5 bits (149), Expect = 2e-10
 Identities = 50/267 (18%), Positives = 87/267 (32%), Gaps = 35/267 (13%)

Query: 60  ECLPNLETLEMSFC------NSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELL 113
           +   +L +L +S        ++L+RL T      +L+SL L+  + LE    +L++   L
Sbjct: 181 DTYTSLVSLNISCLASEVSFSALERLVTR---CPNLKSLKLNRAVPLEKLATLLQRAPQL 237

Query: 114 EEINLEEASNIKE---LPSSIENLEGLKQLK-LTGCTKLG--SLPESLGNLKSLERLHAG 167
           EE+     +              L G K+L+ L+G        LP        L  L+  
Sbjct: 238 EELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLS 297

Query: 168 LLAI--PQAPSSIVDLNKLETLSLFECRGLV-LPPLLSGLSSLKKLELGDCEIMEIPPDI 224
              +        +    KL+ L + +      L  L S    L++L +   E   + P++
Sbjct: 298 YATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNV 357

Query: 225 G-----------CLSSLESLNLSGNNI--ESLPTSISQLSRLRWLYLVNCVKLQSLPELP 271
                           LES+      +   +L T       +    L             
Sbjct: 358 ALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTL 417

Query: 272 LLL---VMLGASDCKRLQFLPELTSCL 295
             L          CK L+ L  L+  L
Sbjct: 418 EPLDIGFGAIVEHCKDLRRL-SLSGLL 443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 54.9 bits (132), Expect = 2e-08
 Identities = 35/238 (14%), Positives = 74/238 (31%), Gaps = 29/238 (12%)

Query: 53  EEVPLSIECLPNLETLEMSFCNSL-KRLSTSICKLKSLRSLDLSYCINLESFPEILEKME 111
             +P        L TL +S+       L   +C+   L+ L +   I       +    +
Sbjct: 279 AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCK 338

Query: 112 LLEEINLEEASNIKELPSSIENLEGLK---------QLKLTGCTKLG-----SLPESLGN 157
            L E+ +  +      P+     +GL          +  L  C ++      ++  +  N
Sbjct: 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPN 398

Query: 158 LKSLERLHAGLLAIPQAPSSIVD---------LNKLETLSLFECRG-LVLPPLLSGLSSL 207
           +           A        +D            L  LSL       V   + +    +
Sbjct: 399 MTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKM 458

Query: 208 KKLELGDCEI--MEIPPDIGCLSSLESLNLSGNNI--ESLPTSISQLSRLRWLYLVNC 261
           + L +       + +   +    SL  L +       ++L  + S+L  +R L++ +C
Sbjct: 459 EMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSC 516

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 50/273 (18%), Positives = 89/273 (32%), Gaps = 38/273 (13%)

Query: 67  TLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESF---------------PEILEKME 111
            + +  C ++   +T I +   +RS++L    +   F                 +     
Sbjct: 47  KVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYT 105

Query: 112 LLEEINLEEAS-NIKELPSSIENLEGLKQLKLTGCTKLG--SLPESLGNLKSLERLHAGL 168
            LEEI L+        L    ++ +  K L L+ C       L       ++L+ L    
Sbjct: 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRE 165

Query: 169 LAIPQAPSSIVD-----LNKLETLSLFECRGLV----LPPLLSGLSSLKKLELGDCEIME 219
             +       +         L +L++      V    L  L++   +LK L+L     +E
Sbjct: 166 SDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE 225

Query: 220 -IPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSL---PELPLLLV 275
            +   +     LE L   G   E  P   S LS      L  C +L+ L    +     +
Sbjct: 226 KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA----LSGCKELRCLSGFWDAVPAYL 281

Query: 276 MLGASDCKRLQFLPELTSCLEELDASILQALSN 308
               S C RL  L  L+         +++ L  
Sbjct: 282 PAVYSVCSRLTTL-NLSYA-TVQSYDLVKLLCQ 312

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 4/92 (4%)

Query: 181 LNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIMEIPPDI-GCLSSLESLNLSGN 238
           L KL  L L + +   LP  +   L +L+ L + D ++  +P  +   L +L  L L  N
Sbjct: 60  LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN 119

Query: 239 NIESLPTSI-SQLSRLRWLYLVNCVKLQSLPE 269
            ++SLP  +   L++L +L L    +LQSLP+
Sbjct: 120 QLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPK 150

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 52.3 bits (126), Expect = 7e-08
 Identities = 47/155 (30%), Positives = 70/155 (45%), Gaps = 12/155 (7%)

Query: 123 NIKELPSSI-ENLEGLKQLKLTGCTKLGSLPE----SLGNLKSLERLHAGLLAIPQAPSS 177
            +  LPS     L  L+ L L    KL +LP      L NL++L      L A+P     
Sbjct: 48  KLSSLPSKAFHRLTKLRLLYLND-NKLQTLPAGIFKELKNLETLWVTDNKLQALP--IGV 104

Query: 178 IVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIMEIPPDI-GCLSSLESLNL 235
              L  L  L L   +   LPP +   L+ L  L LG  E+  +P  +   L+SL+ L L
Sbjct: 105 FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL 164

Query: 236 SGNNIESLPTSI-SQLSRLRWLYLVNCVKLQSLPE 269
             N ++ +P     +L+ L+ L L N  +L+ +PE
Sbjct: 165 YNNQLKRVPEGAFDKLTELKTLKLDN-NQLKRVPE 198

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 51/213 (23%), Positives = 90/213 (42%), Gaps = 40/213 (18%)

Query: 36  PRISGNVVELNLMCTPIEEVPLSI-ECLPNLETLEMSFCNSLKRLSTSIC-KLKSLRSLD 93
             I  +  +L+L    +  +P      L  L  L ++  N L+ L   I  +LK+L +L 
Sbjct: 33  SNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLND-NKLQTLPAGIFKELKNLETLW 91

Query: 94  LSYCINLESFPE-ILEKMELLEEINLEEASN-IKELPSSI-ENLEGLKQLKLTGCTKLGS 150
           ++    L++ P  + +++  L E+ L+   N +K LP  + ++L  L  L L    +L S
Sbjct: 92  VTDN-KLQALPIGVFDQLVNLAELRLD--RNQLKSLPPRVFDSLTKLTYLSLGYN-ELQS 147

Query: 151 LPE----SLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSS 206
           LP+     L +LK L RL+                N+L+ +                L+ 
Sbjct: 148 LPKGVFDKLTSLKEL-RLYN---------------NQLKRVP---------EGAFDKLTE 182

Query: 207 LKKLELGDCEIMEIPPDI-GCLSSLESLNLSGN 238
           LK L+L + ++  +P      L  L+ L L  N
Sbjct: 183 LKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 60.7 bits (147), Expect = 3e-10
 Identities = 57/304 (18%), Positives = 107/304 (35%), Gaps = 34/304 (11%)

Query: 30  VNLREFPRISGNVVELNLMCTPIEEVPLSI-ECLPNLETLEMSFC----NSLKRLSTSIC 84
           + L+  PR +   +        +      I   L  L+++           L RL+ +  
Sbjct: 78  LKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARA 137

Query: 85  KLKSLRSLDLSYCINL--ESFPEILEKMELLEEINLEEASN-------IKELPSSIENLE 135
               L +L L  C     +    I+     ++ + +EE+S        + EL     +LE
Sbjct: 138 D--DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLE 195

Query: 136 GLKQLKLTGCTK-----LGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLF 190
            L    +T   K     L ++  +  +L S++     +L +     +  +L +    SL 
Sbjct: 196 VLN-FYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLN 254

Query: 191 ECRGLVLPPL-LSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNI--ESLPTSI 247
           E  G+    + L     L +L L      E+P      + +  L+L    +  E   T I
Sbjct: 255 EDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLI 314

Query: 248 SQLSRLRWLYLVNCVKLQSLPELPLLLVMLGASDCKRLQFLPELTSCLEELDASILQALS 307
            +   L  L   N +  + L  L        A  CK+L+ L  +    +E      + L 
Sbjct: 315 QKCPNLEVLETRNVIGDRGLEVL--------AQYCKQLKRL-RIERGADEQGMEDEEGLV 365

Query: 308 NRTG 311
           ++ G
Sbjct: 366 SQRG 369

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 54.6 bits (131), Expect = 2e-08
 Identities = 36/242 (14%), Positives = 84/242 (34%), Gaps = 34/242 (14%)

Query: 53  EEVPLSIECLPNLETLEMSFCNSL-KRLSTSICKLKSLRSLDLSYCINLESFPEILEKME 111
            E+P+       +  L++ +     +   T I K  +L  L+    I       + +  +
Sbjct: 283 NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCK 342

Query: 112 LLEEINLEEASNIKELPSSIENL--EGLKQLKLTGCTKL---------------GSLPES 154
            L+ + +E  ++ + +      +   GL  L   GC +L                S+   
Sbjct: 343 QLKRLRIERGADEQGMEDEEGLVSQRGLIAL-AQGCQELEYMAVYVSDITNESLESIGTY 401

Query: 155 LGNLKSLERL------HAGLLAIPQAPSSIVD-LNKLETLSLFECRGLV----LPPLLSG 203
           L NL     +          L +     S++    KL   + +  +G +    L  +   
Sbjct: 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQY 461

Query: 204 LSSLKKLELGDCEI--MEIPPDIGCLSSLESLNLSGNNI--ESLPTSISQLSRLRWLYLV 259
             +++ + LG        +        +L+ L + G      ++  ++++L  LR+L++ 
Sbjct: 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQ 521

Query: 260 NC 261
             
Sbjct: 522 GY 523

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 49.9 bits (119), Expect = 7e-07
 Identities = 46/266 (17%), Positives = 88/266 (33%), Gaps = 48/266 (18%)

Query: 41  NVVELNLMCTPI--EEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCI 98
            + +L+L+   +  E+    I+  PNLE LE       + L       K L+ L +    
Sbjct: 294 QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGA 353

Query: 99  NL------------ESFPEILEKMELLEEINLEEA----SNIKELPSSIENLEGLKQLKL 142
           +                  + +  + LE + +  +     +++ + + ++NL   + + L
Sbjct: 354 DEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLL 413

Query: 143 TGCTKLGSLPESLG------NLKSLERLH----------AGLLAIPQAPSSIVDLNKLET 186
               ++  LP   G        K L R             GL  I Q          +  
Sbjct: 414 DREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQY------SPNVRW 467

Query: 187 LSLFECRGLV--LPPLLSGLSSLKKLELGDCEIME--IPPDIGCLSSLESLNLSGNNIES 242
           + L         L     G  +L+KLE+  C   E  I   +  L SL  L + G     
Sbjct: 468 MLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527

Query: 243 LPTSISQLSR----LRWLYLVNCVKL 264
               + Q++R    +  +      ++
Sbjct: 528 TGQDLMQMARPYWNIELIPSRRVPEV 553

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.8 bits (145), Expect = 3e-10
 Identities = 41/205 (20%), Positives = 76/205 (37%), Gaps = 33/205 (16%)

Query: 62  LPNLETLEMSFCNSLKRLSTSICK-LKSLRSLDLSYCINLESFPEILEKMELLEEINLEE 120
           LP L  + +   N+L  ++    + L +L+ L +S    ++  P+ + K+  L+++ L+ 
Sbjct: 78  LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPD-VHKIHSLQKVLLDI 135

Query: 121 ASN--IKELPS-SIENLEG-LKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPS 176
             N  I  +   S   L      L L     +  +  S  N   L+ L+           
Sbjct: 136 QDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAFNGTQLDELN----------- 183

Query: 177 SIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDI-GCLSSLESLNL 235
            + D N LE L            +  G S    L++    I  +P      L  L + + 
Sbjct: 184 -LSDNNNLEELP---------NDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 233

Query: 236 SGNNIESLPTSISQLSRLRWLYLVN 260
              N++ LP ++ +L  L    L  
Sbjct: 234 --YNLKKLP-TLEKLVALMEASLTY 255

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 57.9 bits (140), Expect = 2e-09
 Identities = 30/157 (19%), Positives = 56/157 (35%), Gaps = 12/157 (7%)

Query: 123 NIKELPSSI-ENLEGLKQLKLTGCTKLGSLPES----LGNLKSLERLHA-GLLAIPQAPS 176
            ++ +          L++++++    L  +       L  L  +    A  LL I   P 
Sbjct: 41  KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN--PE 98

Query: 177 SIVDLNKLETLSLFECRGLVLPPLL-SGLSSLKKLELGD-CEIMEIPPDI--GCLSSLES 232
           +  +L  L+ L +       LP +          L++ D   I  I  +   G       
Sbjct: 99  AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI 158

Query: 233 LNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPE 269
           L L+ N I+ +  S    ++L  L L +   L+ LP 
Sbjct: 159 LWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPN 195

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 40.2 bits (94), Expect = 7e-04
 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 7/111 (6%)

Query: 35  FPRISGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICK-LKSLRSLD 93
           F  +S   V L L    I+E+  S      L+ L +S  N+L+ L   +         LD
Sbjct: 149 FVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 208

Query: 94  LSYCINLESFPE-ILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLT 143
           +S    + S P   LE ++ L   +     N+K+LP ++E L  L +  LT
Sbjct: 209 ISRT-RIHSLPSYGLENLKKLRARST---YNLKKLP-TLEKLVALMEASLT 254

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 57.0 bits (138), Expect = 2e-09
 Identities = 38/164 (23%), Positives = 71/164 (43%), Gaps = 10/164 (6%)

Query: 107 LEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHA 166
              +    + NL +  ++ +L  S + L G++         + SL   +    +L+ LH 
Sbjct: 15  DPGLANAVKQNLGK-QSVTDL-VSQKELSGVQNFNGDNS-NIQSL-AGMQFFTNLKELHL 70

Query: 167 GLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGC 226
               I    S + DL KLE LS+   R   L  +    + L +L L + E+ +    +  
Sbjct: 71  SHNQISD-LSPLKDLTKLEELSVNRNRLKNLNGI--PSACLSRLFLDNNELRDTDS-LIH 126

Query: 227 LSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPEL 270
           L +LE L++  N ++S+   +  LS+L  L L    ++ +   L
Sbjct: 127 LKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGN-EITNTGGL 168

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 57.4 bits (138), Expect = 2e-09
 Identities = 27/104 (25%), Positives = 36/104 (34%), Gaps = 6/104 (5%)

Query: 160 SLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGL-VLPP-LLSGLSSLKKLELGDCEI 217
            L     G L        +     L  L +   + L  L    L GL  L+ L +    +
Sbjct: 12  GLRCTRDGALDSLH---HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 218 MEIPPDI-GCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVN 260
             + PD       L  LNLS N +ESL     Q   L+ L L  
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSG 112

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.7 bits (105), Expect = 3e-05
 Identities = 25/135 (18%), Positives = 38/135 (28%), Gaps = 30/135 (22%)

Query: 123 NIKELPSSIENLEGLKQLKLTGCTKLGSLP-ESLGNLKSLERLHAGLLAIPQAPSSIVDL 181
              +    +   E L +L +     L  L    L  L  L  L              +  
Sbjct: 19  GALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLT-------------IVK 65

Query: 182 NKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIE 241
           + L  ++         P        L +L L    +  +        SL+ L LSGN   
Sbjct: 66  SGLRFVA---------PDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN--- 113

Query: 242 SLPTSISQLSRLRWL 256
                +     LRWL
Sbjct: 114 ----PLHCSCALRWL 124

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 56.4 bits (136), Expect = 4e-09
 Identities = 45/236 (19%), Positives = 87/236 (36%), Gaps = 18/236 (7%)

Query: 41  NVVELNLMCTPIEEVPLS--IECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCI 98
            V  ++L  + IE   L   +     L+ L +        +  ++ K  +L  L+LS C 
Sbjct: 94  RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS 153

Query: 99  NL--ESFPEILEKMELLEEINLEEASNIKELPSSI---ENLEGLKQLKLTGCTK------ 147
                +   +L     L+E+NL    +  E    +      E + QL L+G  K      
Sbjct: 154 GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD 213

Query: 148 LGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGL--VLPPLLSGLS 205
           L +L     NL  L+   + +L           LN L+ LSL  C  +       L  + 
Sbjct: 214 LSTLVRRCPNLVHLDLSDSVMLK-NDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP 272

Query: 206 SLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNC 261
           +LK L++           +    +L  L ++ ++  ++        + + ++ + C
Sbjct: 273 TLKTLQVFGIVPDGTLQLL--KEALPHLQINCSHFTTIARPTIGNKKNQEIWGIKC 326

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 46.8 bits (111), Expect = 5e-06
 Identities = 47/308 (15%), Positives = 88/308 (28%), Gaps = 54/308 (17%)

Query: 6   CESLRCFPQNIHFISSIKIDCYKCVNLREFPRISGNVVELNLMCTPIEEVPLSIECLPNL 65
           C+       +     ++ +             +S  V+      + +++          +
Sbjct: 36  CKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRV 95

Query: 66  ETLEMSFCN-SLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNI 124
           + +++S     +  L   + +   L++L L      +     L K   L  +NL   S  
Sbjct: 96  QHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGF 155

Query: 125 KE--LPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLN 182
            E  L + + +   L +L L+ C                      +       S      
Sbjct: 156 SEFALQTLLSSCSRLDELNLSWCFDFTE---------------KHVQVAVAHVSE----- 195

Query: 183 KLETLSLFECRGLV----LPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGN 238
            +  L+L   R  +    L  L+    +L  L+L D                    L  +
Sbjct: 196 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV-----------------MLKND 238

Query: 239 NIESLPTSISQLSRLRWLYLVNCVK-----LQSLPELPLLLVMLGASDCKRLQFLPELTS 293
             +       QL+ L+ L L  C       L  L E+P L   L          L  L  
Sbjct: 239 CFQEF----FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT-LQVFGIVPDGTLQLLKE 293

Query: 294 CLEELDAS 301
            L  L  +
Sbjct: 294 ALPHLQIN 301

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.4 bits (136), Expect = 5e-09
 Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 16/112 (14%)

Query: 165 HAGLLAIPQA-PSSIVDL----NKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIME 219
              L  +PQ+ PS    L    N L  L              + L++L  L L    +  
Sbjct: 27  KQQLPNVPQSLPSYTALLDLSHNNLSRLRAEW--------TPTRLTNLHSLLLSHNHLNF 78

Query: 220 IPPDI-GCLSSLESLNLSGNNIESLPTSI-SQLSRLRWLYLVNCVKLQSLPE 269
           I  +    + +L  L+LS N++ +L   + S L  L  L L N   +  +  
Sbjct: 79  ISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN-HIVVVDR 129

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.1 bits (112), Expect = 5e-06
 Identities = 41/233 (17%), Positives = 80/233 (34%), Gaps = 23/233 (9%)

Query: 31  NLREFPR-ISGNVVELNLMCTPIEEVP--LSIECLPNLETLEMSFCNSLKRLSTSI-CKL 86
            L   P+ +      L+L    +  +    +   L NL +L +S  N L  +S+     +
Sbjct: 29  QLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSH-NHLNFISSEAFVPV 87

Query: 87  KSLRSLDLSYCINLESFP-EILEKMELLEEINLEEASNIKELPSSI-ENLEGLKQLKLTG 144
            +LR LDLS   +L +    +   ++ LE + L   ++I  +  +  E++  L++L L+ 
Sbjct: 88  PNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYN-NHIVVVDRNAFEDMAQLQKLYLSQ 145

Query: 145 CTKLGSLPE----SLGNLKSLERL---HAGLLAIPQAPSSIVDLNKLETLSLFE------ 191
             ++   P         L  L  L      L  +P      +       L L        
Sbjct: 146 N-QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204

Query: 192 CRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLP 244
           C+   L            ++  +         +  + SL+  N S     +  
Sbjct: 205 CKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFFNCSEYKESAWE 257

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.9 bits (132), Expect = 1e-08
 Identities = 37/213 (17%), Positives = 70/213 (32%), Gaps = 19/213 (8%)

Query: 62  LPNLETLEMSFCNSLKRLSTSI--CKLKSLRSLDLSYCINLESFPEILE----KMELLEE 115
           +  L+ L +            +       L  L+L           + E        L+ 
Sbjct: 94  ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKV 153

Query: 116 INLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSL-------PESLGNLKSLERLHAGL 168
           +++ +A ++      +     L  L L+   +LG         P     L+ L   +AG+
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213

Query: 169 LAIP-QAPSSIVDLNKLETLSLFECR--GLVLPPLLSGLSSLKKLELGDCEIMEIPPDIG 225
                   +      +L+ L L           P     S L  L L    + ++P  + 
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL- 272

Query: 226 CLSSLESLNLSGNNIESLPTSISQLSRLRWLYL 258
             + L  L+LS N ++  P S  +L ++  L L
Sbjct: 273 -PAKLSVLDLSYNRLDRNP-SPDELPQVGNLSL 303

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 53.0 bits (127), Expect = 5e-08
 Identities = 41/221 (18%), Positives = 73/221 (33%), Gaps = 15/221 (6%)

Query: 62  LPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEA 121
           +            +L+ L  S  +  +L +L+++              + +L   N+  A
Sbjct: 75  VRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA 134

Query: 122 SNIKELPSSIENL-EGLKQLKLTGCTKLGSLPESLGNLKSLERL---HAGLLAIPQAPSS 177
           +    L    + L  GLK L +     L    E +    +L  L       L      S+
Sbjct: 135 TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194

Query: 178 IVD--LNKLETLSLFECRGLVLPP----LLSGLSSLKKLELGDCEIMEIPPDIGC--LSS 229
           +       L+ L+L              L +    L+ L+L    + +      C   S 
Sbjct: 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ 254

Query: 230 LESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPEL 270
           L SLNLS   ++ +P  +    +L  L L    +L   P  
Sbjct: 255 LNSLNLSFTGLKQVPKGLPA--KLSVLDLSYN-RLDRNPSP 292

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 40/210 (19%), Positives = 64/210 (30%), Gaps = 18/210 (8%)

Query: 45  LNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLS----TSICKLKSLRSLDLSYCINL 100
            NL  T     PL     P+L  L +   +   R +            L+ L ++   +L
Sbjct: 103 ENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL 162

Query: 101 ESFPEILEKMELLEEINL-------EEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPE 153
               E +     L  ++L       E        P     L+ L        T  G    
Sbjct: 163 NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222

Query: 154 SLGNLKSLERL---HAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKL 210
                  L+ L   H  L        S    ++L +L+L       +P  L   + L  L
Sbjct: 223 LAAARVQLQGLDLSHNSLRDAA-GAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVL 279

Query: 211 ELGDCEIMEIPPDIGCLSSLESLNLSGNNI 240
           +L    +   P     L  + +L+L GN  
Sbjct: 280 DLSYNRLDRNP-SPDELPQVGNLSLKGNPF 308

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 17/110 (15%)

Query: 167 GLLAIPQA-PSSIVDL----NKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIP 221
           GL  IP   P +I ++    N ++ +          P   S    L++++L + +I E+ 
Sbjct: 22  GLTEIPTNLPETITEIRLEQNTIKVIP---------PGAFSPYKKLRRIDLSNNQISELA 72

Query: 222 PDI-GCLSSLESLNLSGNNIESLPTSI-SQLSRLRWLYLVNCVKLQSLPE 269
           PD    L SL SL L GN I  LP S+   L  L+ L L N  K+  L  
Sbjct: 73  PDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL-NANKINCLRV 121

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 8/125 (6%)

Query: 42  VVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLE 101
            VEL+ M  PIE++  ++  L   + L +S  N+++++S S+  +++LR L L     ++
Sbjct: 27  KVELHGMIPPIEKMDATLSTLKACKHLALS-TNNIEKIS-SLSGMENLRILSLGRN-LIK 83

Query: 102 SFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPE--SLGNLK 159
               +    + LEE+ +   + I  L S IE L  L+ L ++   K+ +  E   L  L 
Sbjct: 84  KIENLDAVADTLEELWISY-NQIASL-SGIEKLVNLRVLYMSNN-KITNWGEIDKLAALD 140

Query: 160 SLERL 164
            LE L
Sbjct: 141 KLEDL 145

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.8 bits (109), Expect = 5e-06
 Identities = 33/168 (19%), Positives = 66/168 (39%), Gaps = 8/168 (4%)

Query: 105 EILEKMELLEEINLE---EASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSL 161
           E  + +   E   +E       I+++ +++  L+  K L L     +  +  SL  +++L
Sbjct: 15  EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLAL-STNNIEKI-SSLSGMENL 72

Query: 162 ERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIP 221
             L  G   I +  +     + LE L +   +   L  +   L +L+ L + + +I    
Sbjct: 73  RILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGI-EKLVNLRVLYMSNNKITNWG 131

Query: 222 P--DIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSL 267
               +  L  LE L L+GN + +     +  S  R   +     L+ L
Sbjct: 132 EIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.8 bits (109), Expect = 5e-06
 Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 36/167 (21%)

Query: 118 LEEASNIKELPSSIENLEGLKQLKLT------GCTKLGSLPESLGNLKSLERLHAGLLAI 171
           + +A+ IK+     E  + +   +            +  +  +L  LK+ + L       
Sbjct: 1   MAKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLA------ 54

Query: 172 PQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLE 231
                  +  N +E +S            LSG+ +L+ L LG   I +I        +LE
Sbjct: 55  -------LSTNNIEKISS-----------LSGMENLRILSLGRNLIKKIENLDAVADTLE 96

Query: 232 SLNLSGNNIESLPTSISQLSRLRWLYL-VNCVK----LQSLPELPLL 273
            L +S N I SL + I +L  LR LY+  N +     +  L  L  L
Sbjct: 97  ELWISYNQIASL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKL 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 8/106 (7%)

Query: 167 GLLAIPQA-PSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDI- 224
            L  IP+  P    +L     L+  E   L    +   L  L+K+   + +I +I     
Sbjct: 22  KLNKIPEHIPQYTAELR----LNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAF 77

Query: 225 GCLSSLESLNLSGNNIESLPTSI-SQLSRLRWLYLVNCVKLQSLPE 269
              S +  + L+ N +E++   +   L  L+ L L +  ++  +  
Sbjct: 78  EGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN-RITCVGN 122

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.4 bits (108), Expect = 8e-06
 Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 7/137 (5%)

Query: 127 LPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLET 186
           +P     L  L   + T     G   + L  L+ +   +  +  I     +    + +  
Sbjct: 30  IPQYTAELR-LNNNEFTVLEATGIF-KKLPQLRKINFSNNKITDIE--EGAFEGASGVNE 85

Query: 187 LSLFECRGLVLPP-LLSGLSSLKKLELGDCEIMEIPPDI-GCLSSLESLNLSGNNIESLP 244
           + L   R   +   +  GL SLK L L    I  +  D    LSS+  L+L  N I ++ 
Sbjct: 86  ILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA 145

Query: 245 TSI-SQLSRLRWLYLVN 260
                 L  L  L L+ 
Sbjct: 146 PGAFDTLHSLSTLNLLA 162

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 50.2 bits (120), Expect = 6e-07
 Identities = 31/182 (17%), Positives = 69/182 (37%), Gaps = 8/182 (4%)

Query: 85  KLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTG 144
              ++   + +             K+     ++         +  +  +L  L+ L L  
Sbjct: 298 IFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQM 357

Query: 145 CTKLGSLPESLG---NLKSLERLHAG--LLAIPQAPSSIVDLNKLETLSLFECRGLVLPP 199
             +L  L +       +KSL++L      ++  +          L +L++     L    
Sbjct: 358 -NQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI-LTDTI 415

Query: 200 LLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSI-SQLSRLRWLYL 258
                  +K L+L   +I  IP  +  L +L+ LN++ N ++S+P  I  +L+ L+ ++L
Sbjct: 416 FRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWL 475

Query: 259 VN 260
             
Sbjct: 476 HT 477

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 49.6 bits (117), Expect = 7e-07
 Identities = 34/215 (15%), Positives = 70/215 (32%), Gaps = 32/215 (14%)

Query: 60  ECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLE 119
           E   ++    +                      ++S+ I       +L+ M LL  + ++
Sbjct: 122 EDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISW-IEQVDLSPVLDAMPLLNNLKIK 180

Query: 120 EASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLG--NLKSLERLHAGLLAIPQAPSS 177
             +N+            LK L++       S+ E +   +L +LE+L             
Sbjct: 181 GTNNLSIGKKP---RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKL------------- 224

Query: 178 IVDLNKLETLSLFECRGLVLPPLLSG--LSSLKKLELGDCEIM-EIPPDIG---CLSSLE 231
              L        F+    V  PL S     +LK L + D E    +         L  LE
Sbjct: 225 --VLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLE 282

Query: 232 SLNLSGNNI-----ESLPTSISQLSRLRWLYLVNC 261
           ++++S   +       L   + ++  L+++ +   
Sbjct: 283 TMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 49.2 bits (116), Expect = 1e-06
 Identities = 31/226 (13%), Positives = 68/226 (30%), Gaps = 34/226 (15%)

Query: 17  HFISSIKIDCYKCVNLREFPRISGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSL 76
                I  +  K  +         +  E  +      ++   ++ +P L  L++   N+L
Sbjct: 126 DIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185

Query: 77  KRLSTSICKLKSLRSLDLSYCINLESFPEILEKMEL--LEEINLEEASNIKELPSSIENL 134
              S       +L+SL++      +S  E +   +L  LE++ L            +   
Sbjct: 186 ---SIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242

Query: 135 EGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRG 194
             L          L  L      +   E  +  +    ++      L +LET+ +     
Sbjct: 243 RPL--FSKDRFPNLKWL-----GIVDAEEQNVVVEMFLESDI----LPQLETMDISAGV- 290

Query: 195 LVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNI 240
                            L D     +   +  +  L+ +N+  N +
Sbjct: 291 -----------------LTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.9 bits (119), Expect = 8e-07
 Identities = 37/220 (16%), Positives = 71/220 (32%), Gaps = 16/220 (7%)

Query: 62  LPNLETLEMSFCN-----SLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEI 116
              +E L +           +  + S   LKSL    +   + L S   +      +   
Sbjct: 275 PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIK 334

Query: 117 NLEEASNIKELPSSIEN-LEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAP 175
            L   S+   +             L  T      S+ +    LK L+ L      +    
Sbjct: 335 MLS-ISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF 393

Query: 176 SSIVDLNKLETLSLFECRGLVLPP-----LLSGLSSLKKLELGDCEIMEIPPDIGCL-SS 229
              +    + +L   +     L         +   S+  L L    +        CL   
Sbjct: 394 KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR--CLPPK 451

Query: 230 LESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPE 269
           ++ L+L  N I S+P  ++ L  L+ L + +  +L+S+P+
Sbjct: 452 VKVLDLHNNRIMSIPKDVTHLQALQELNVASN-QLKSVPD 490

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 12/92 (13%)

Query: 180 DLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDI-GCLSSLESLNLSGN 238
               L TLS              GL+ L  L L   ++  +   +   L+ L +L L+ N
Sbjct: 43  QSTGLATLS---------DATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93

Query: 239 NIESLPTSI-SQLSRLRWLYLVNCVKLQSLPE 269
            + SLP  +   L++L  LYL    +L+SLP 
Sbjct: 94  QLASLPLGVFDHLTQLDKLYL-GGNQLKSLPS 124

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 14/152 (9%)

Query: 122 SNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVD- 180
           S I   P+  E L+    L+ TG   L     +   L  L  L+     +    + + D 
Sbjct: 31  SGI---PADTEKLD----LQSTGLATLS--DATFRGLTKLTWLNLDYNQLQTLSAGVFDD 81

Query: 181 LNKLETLSLFECRGLVLPPLL-SGLSSLKKLELGDCEIMEIPPDI-GCLSSLESLNLSGN 238
           L +L TL L   +   LP  +   L+ L KL LG  ++  +P  +   L+ L+ L L+ N
Sbjct: 82  LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141

Query: 239 NIESLPTSI-SQLSRLRWLYLVNCVKLQSLPE 269
            ++S+P     +L+ L+ L L    +LQS+P 
Sbjct: 142 QLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPH 172

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 8/114 (7%)

Query: 153 ESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPL--LSGLSSLKKL 210
               N      L      IP   +    L++ + +   +     +  L     L  LK L
Sbjct: 13  AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE---IRKLDGFPLLRRLKTL 69

Query: 211 ELGDCEIMEIPPDIG-CLSSLESLNLSGNNIESLPT--SISQLSRLRWLYLVNC 261
            + +  I  I   +   L  L  L L+ N++  L     ++ L  L +L ++  
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 14/90 (15%)

Query: 182 NKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDI-GCLSSLESLNLSGNNI 240
           NKL  +S  +            L++L  L L   ++  +P  +   L++L+ L L  N +
Sbjct: 73  NKLHDISALK-----------ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121

Query: 241 ESLPTSI-SQLSRLRWLYLVNCVKLQSLPE 269
           +SLP  +  +L+ L +L L    +LQSLP+
Sbjct: 122 QSLPDGVFDKLTNLTYLNL-AHNQLQSLPK 150

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 45/186 (24%), Positives = 86/186 (46%), Gaps = 11/186 (5%)

Query: 88  SLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTK 147
                +L      +S  + + + EL     +   ++  +    I+ L  ++ L L G  K
Sbjct: 20  ETIKANLKK----KSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGG-NK 74

Query: 148 LGSLPESLGNLKSLERLHAGLLAIPQAPSSIVD-LNKLETLSLFECRGLVLPP-LLSGLS 205
           L  +  +L  L +L  L      +   P+ + D L  L+ L L E +   LP  +   L+
Sbjct: 75  LHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT 133

Query: 206 SLKKLELGDCEIMEIPPDI-GCLSSLESLNLSGNNIESLPTSI-SQLSRLRWLYLVNCVK 263
           +L  L L   ++  +P  +   L++L  L+LS N ++SLP  +  +L++L+ L L    +
Sbjct: 134 NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN-Q 192

Query: 264 LQSLPE 269
           L+S+P+
Sbjct: 193 LKSVPD 198

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 36/238 (15%), Positives = 67/238 (28%), Gaps = 44/238 (18%)

Query: 58  SIECLPNLETLEMSFCN----SLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELL 113
            +    +++ + +S       + + LS +I   K L   + S         EI E + LL
Sbjct: 27  VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLL 86

Query: 114 EEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLH-------- 165
            +  L +   +  +      L        T    L    + L     LE L+        
Sbjct: 87  LQA-LLKCPKLHTV-----RLSD-NAFGPTAQEPLI---DFLSKHTPLEHLYLHNNGLGP 136

Query: 166 ------AGLLAIPQAPSSIVDLNKLETLSLFECR-----GLVLPPLLSGLSSLKKLELGD 214
                 A  L          +   L ++     R                  L  +++  
Sbjct: 137 QAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQ 196

Query: 215 CEI------MEIPPDIGCLSSLESLNLSGNNI-----ESLPTSISQLSRLRWLYLVNC 261
             I        +   +     L+ L+L  N        +L  ++     LR L L +C
Sbjct: 197 NGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 13/117 (11%)

Query: 173 QAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLES 232
           + P+++ +L     L   +     +  L +   +L+ L L +  ++ +  ++  L  L+ 
Sbjct: 21  RTPAAVREL----VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKK 75

Query: 233 LNLSGNNIESLPTSISQ-LSRLRWLYLVNCVKLQSLPELPLLLVMLGASDCKRLQFL 288
           L LS N I      +++ L  L  L L    KL+ +  L  L         + L+ L
Sbjct: 76  LELSENRIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPL------KKLECLKSL 125

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 3/69 (4%)

Query: 203 GLSSLKKLELGDCEIMEIPPDI-GCLSSLESLNLSGNNIESLPTSI-SQLSRLRWLYLVN 260
            L+SL +L LG  ++  +P  +   L+SL  LNLS N ++SLP  +  +L++L+ L L N
Sbjct: 50  ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL-N 108

Query: 261 CVKLQSLPE 269
             +LQSLP+
Sbjct: 109 TNQLQSLPD 117

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 208 KKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSI-SQLSRLRWLYLVNCVKLQS 266
            +L L   +   +P ++     L  ++LS N I +L     S +++L  L L +  +L+ 
Sbjct: 34  TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL-SYNRLRC 92

Query: 267 LPE 269
           +P 
Sbjct: 93  IPP 95

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 11/91 (12%), Positives = 34/91 (37%), Gaps = 6/91 (6%)

Query: 64  NLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCIN-----LESFPEILEKMELLEEINL 118
            ++ ++ +    +      +  L+ +  + L  C       LE   ++    + + E+ +
Sbjct: 62  KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEI 121

Query: 119 EEASNIKEL-PSSIENLEGLKQLKLTGCTKL 148
               N+ +    ++ +   LK L L+    +
Sbjct: 122 ISCGNVTDKGIIALHHFRNLKYLFLSDLPGV 152

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 4/111 (3%)

Query: 162 ERLHAGLLAIPQAPSSIVD-LNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIME 219
           + L+     I +    + D L  L+ L L   +   LP  +   L+ L  L+LG  ++  
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102

Query: 220 IPPDI-GCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPE 269
           +P  +   L  L+ L +  N +  LP  I +L+ L  L L    +L+S+P 
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPH 152

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 39.2 bits (92), Expect = 8e-04
 Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 3/67 (4%)

Query: 205 SSLKKLELGDCEIMEIPPDI-GCLSSLESLNLSGNNIESLPTSI-SQLSRLRWLYLVNCV 262
           SS  +LEL   ++  +P  +   L+ L  L+LS N I+SLP  +  +L++L  LYL +  
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL-HEN 86

Query: 263 KLQSLPE 269
           KLQSLP 
Sbjct: 87  KLQSLPN 93

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 39.2 bits (92), Expect = 9e-04
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 5/77 (6%)

Query: 197 LPP--LLSGLSSLKKLELGDCEIMEIPPDI-GCLSSLESLNLSGNNIESLPTSI-SQLSR 252
           +    L   L  L KLEL   ++  I P+     S ++ L L  N I+ +   +   L +
Sbjct: 44  ISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQ 103

Query: 253 LRWLYLVNCVKLQSLPE 269
           L+ L L +  ++  +  
Sbjct: 104 LKTLNLYDN-QISCVMP 119

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	369
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.97
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.96
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.96
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.96
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.96
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.96
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.96
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.96
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.96
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.95
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.95
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.95
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.95
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.95
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.95
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.95
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.95
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.95
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.95
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.95
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.95
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.95
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.95
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.94
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.94
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.94
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.94
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.94
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.93
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.93
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.93
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.92
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.92
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.91
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.91
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.91
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.91
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.9
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.89
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.89
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.89
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.88
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.87
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.87
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.87
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.85
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.85
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.84
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.84
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.83
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.83
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.83
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.82
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.81
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.81
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.8
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.79
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.79
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.78
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.78
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.77
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.75
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.75
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.75
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.74
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.73
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.73
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.72
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.72
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.71
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.69
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.68
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.68
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.68
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.68
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.67
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.66
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.66
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.65
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.65
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.65
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.64
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.64
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.63
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.61
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.54
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.53
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.49
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.48
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.47
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.47
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.46
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.44
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.43
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.42
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.41
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.39
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.38
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.37
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.33
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.3
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.27
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.23
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.19
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.19
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.17
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.02
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.98
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.96
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.89
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.87
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.85
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.81
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.76
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.71
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.64
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.6
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.53
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.52
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.48
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.27
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.24
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.9
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.81
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.76
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.75
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.72
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.24

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.97  E-value=3.2e-30  Score=250.30  Aligned_cols=265  Identities=19%  Similarity=0.249  Sum_probs=213.0

Q ss_pred             cCCccC---CeeEEecCCccCcc------------------cCccCC--CCCCCCEEeCcCCcccccccccccCCCCCcE
Q 017542           35 FPRISG---NVVELNLMCTPIEE------------------VPLSIE--CLPNLETLEMSFCNSLKRLSTSICKLKSLRS   91 (369)
Q Consensus        35 ~~~~~~---~L~~L~l~~~~~~~------------------l~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~   91 (369)
                      +|+.++   +|++|++++|.++.                  +|..+.  .+++|++|++++|...+.+|..+.++++|++
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  277 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL  277 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence            565554   89999999999987                  899888  9999999999999888899988999999999


Q ss_pred             EecCCCc-CCc-cCchhhhcc------Cccceeeccccccccccch--hhhcCCCCCeEeecCCCCCCCCCcccCCCcch
Q 017542           92 LDLSYCI-NLE-SFPEILEKM------ELLEEINLEEASNIKELPS--SIENLEGLKQLKLTGCTKLGSLPESLGNLKSL  161 (369)
Q Consensus        92 L~l~~~~-~~~-~~~~~~~~l------~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L  161 (369)
                      |++++|. ... .+|..++.+      ++|++|++++|... .+|.  .+..+++|++|++++|...+.+| .+..+++|
T Consensus       278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L  355 (636)
T 4eco_A          278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKL  355 (636)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEE
T ss_pred             EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCC
Confidence            9999987 555 688888776      99999999987766 7887  89999999999999977665788 78889999


Q ss_pred             hhhccCcccCCCCCcccccCCC-CcEEeecCCCCCCCCccccCCC--CCcEEeccCCCCcc-CCCCCC-------CCCCC
Q 017542          162 ERLHAGLLAIPQAPSSIVDLNK-LETLSLFECRGLVLPPLLSGLS--SLKKLELGDCEIME-IPPDIG-------CLSSL  230 (369)
Q Consensus       162 ~~L~l~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~-~~~~~~-------~~~~L  230 (369)
                      ++|++++|.+..+|..+..+++ |++|++++|....+|..+...+  +|+.|++++|.+.+ .|..+.       .+++|
T Consensus       356 ~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L  435 (636)
T 4eco_A          356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV  435 (636)
T ss_dssp             SEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCE
T ss_pred             CEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCC
Confidence            9999999999988888999998 9999999999888888766554  89999999998877 555555       66788


Q ss_pred             CEEEccCCcCCccchhh-ccCCcCcEecccCCcccccCCCCC-c----------ccceeccccccccccCCC-----chh
Q 017542          231 ESLNLSGNNIESLPTSI-SQLSRLRWLYLVNCVKLQSLPELP-L----------LLVMLGASDCKRLQFLPE-----LTS  293 (369)
Q Consensus       231 ~~L~l~~~~l~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~-~----------~L~~L~l~~c~~L~~l~~-----~~~  293 (369)
                      ++|++++|.++.+|..+ ..+++|++|++++| .++.+|... .          +|+.|+++++. +..++.     ..+
T Consensus       436 ~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~l~  513 (636)
T 4eco_A          436 SSINLSNNQISKFPKELFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLP  513 (636)
T ss_dssp             EEEECCSSCCCSCCTHHHHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGGSTTTCT
T ss_pred             CEEECcCCccCcCCHHHHccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEECcCCc-CCccChhhhhccCC
Confidence            99999999888888654 45888888888888 566666421 1          78888887663 444442     224


Q ss_pred             hhHHHhHHHH
Q 017542          294 CLEELDASIL  303 (369)
Q Consensus       294 ~l~~l~~~~~  303 (369)
                      +++.|++.++
T Consensus       514 ~L~~L~Ls~N  523 (636)
T 4eco_A          514 YLVGIDLSYN  523 (636)
T ss_dssp             TCCEEECCSS
T ss_pred             CcCEEECCCC
Confidence            5555555443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.97  E-value=1.3e-29  Score=251.27  Aligned_cols=249  Identities=24%  Similarity=0.300  Sum_probs=164.4

Q ss_pred             CeeEEecCCccCc-ccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeecc
Q 017542           41 NVVELNLMCTPIE-EVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLE  119 (369)
Q Consensus        41 ~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  119 (369)
                      +|++|++++|.++ .+|..+..+++|++|++++|...+.+|..+..+++|++|++++|.....+|..+..+++|++|+++
T Consensus       395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  474 (768)
T 3rgz_A          395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD  474 (768)
T ss_dssp             CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred             CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEec
Confidence            4556666555555 455556666677777777666555666666666777777777766666666667777777777777


Q ss_pred             ccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCC-CCCcccccCCCCcEEeecCCCC-CCC
Q 017542          120 EASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIP-QAPSSIVDLNKLETLSLFECRG-LVL  197 (369)
Q Consensus       120 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~~-~~~  197 (369)
                      +|...+.+|..+..+++|++|++++|...+.+|..++.+++|++|++++|.+. .+|..+..+++|+.|++++|.. +.+
T Consensus       475 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i  554 (768)
T 3rgz_A          475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI  554 (768)
T ss_dssp             SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBC
T ss_pred             CCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcC
Confidence            66666566666777777777777776666666666777777777777777766 5566677777777777776652 122


Q ss_pred             Cc----------------------------------------------------------------------cccCCCCC
Q 017542          198 PP----------------------------------------------------------------------LLSGLSSL  207 (369)
Q Consensus       198 ~~----------------------------------------------------------------------~~~~~~~L  207 (369)
                      |.                                                                      .+..+++|
T Consensus       555 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L  634 (768)
T 3rgz_A          555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM  634 (768)
T ss_dssp             CGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC
T ss_pred             ChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccc
Confidence            22                                                                      22334567


Q ss_pred             cEEeccCCCCcc-CCCCCCCCCCCCEEEccCCcCC-ccchhhccCCcCcEecccCCcccccCCCC---Ccccceeccccc
Q 017542          208 KKLELGDCEIME-IPPDIGCLSSLESLNLSGNNIE-SLPTSISQLSRLRWLYLVNCVKLQSLPEL---PLLLVMLGASDC  282 (369)
Q Consensus       208 ~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~---~~~L~~L~l~~c  282 (369)
                      +.|++++|.+.+ +|..++.++.|++|++++|.++ .+|..++.+++|++|++++|.--..+|..   .++|+.|+++++
T Consensus       635 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N  714 (768)
T 3rgz_A          635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN  714 (768)
T ss_dssp             CEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred             cEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence            777777777775 6666777777777777777777 67777777777777777777433355543   355777777776


Q ss_pred             cccccCC
Q 017542          283 KRLQFLP  289 (369)
Q Consensus       283 ~~L~~l~  289 (369)
                      +--..+|
T Consensus       715 ~l~g~iP  721 (768)
T 3rgz_A          715 NLSGPIP  721 (768)
T ss_dssp             EEEEECC
T ss_pred             cccccCC
Confidence            5333444

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.96  E-value=1e-29  Score=246.80  Aligned_cols=216  Identities=14%  Similarity=0.162  Sum_probs=101.6

Q ss_pred             CeeEEecCCccCcccCc--cCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCc-cceee
Q 017542           41 NVVELNLMCTPIEEVPL--SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMEL-LEEIN  117 (369)
Q Consensus        41 ~L~~L~l~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~  117 (369)
                      +|++|++++|.++.+|.  .+..+++|++|++++|...+.+| .+..+++|++|++++|... .+|..+..+++ |++|+
T Consensus       306 ~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~  383 (636)
T 4eco_A          306 KIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLS  383 (636)
T ss_dssp             TCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEE
T ss_pred             CCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEE
Confidence            44444444444444444  44444444444444444333444 3444444444444444322 34444444444 55555


Q ss_pred             ccccccccccchhhhcCC--CCCeEeecCCCCCCCCCcccC-------CCcchhhhccCcccCCCCCcccc-cCCCCcEE
Q 017542          118 LEEASNIKELPSSIENLE--GLKQLKLTGCTKLGSLPESLG-------NLKSLERLHAGLLAIPQAPSSIV-DLNKLETL  187 (369)
Q Consensus       118 l~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~l~-~~~~L~~L  187 (369)
                      +++|... .+|..+...+  +|++|++++|...+..|..+.       .+++|++|++++|.+..+|..+. .+++|++|
T Consensus       384 Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L  462 (636)
T 4eco_A          384 FAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSI  462 (636)
T ss_dssp             CCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEE
T ss_pred             ccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEE
Confidence            5444322 3443333322  455555555444444444343       44455555555555554444322 24555555


Q ss_pred             eecCCCCCCCCccccC--------CCCCcEEeccCCCCccCCCCCC--CCCCCCEEEccCCcCCccchhhccCCcCcEec
Q 017542          188 SLFECRGLVLPPLLSG--------LSSLKKLELGDCEIMEIPPDIG--CLSSLESLNLSGNNIESLPTSISQLSRLRWLY  257 (369)
Q Consensus       188 ~l~~~~~~~~~~~~~~--------~~~L~~L~l~~~~~~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~  257 (369)
                      ++++|....+|.....        +++|+.|++++|.+..++..+.  .+++|++|++++|.++.+|..+..+++|++|+
T Consensus       463 ~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~  542 (636)
T 4eco_A          463 NLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFG  542 (636)
T ss_dssp             ECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEE
T ss_pred             ECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEE
Confidence            5555554444432111        1155555555555555554443  55555555555555555555555555555555


Q ss_pred             cc
Q 017542          258 LV  259 (369)
Q Consensus       258 l~  259 (369)
                      ++
T Consensus       543 Ls  544 (636)
T 4eco_A          543 IR  544 (636)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.96  E-value=7.2e-29  Score=246.02  Aligned_cols=268  Identities=22%  Similarity=0.253  Sum_probs=219.6

Q ss_pred             CCCccEEecCCCCCccccCCccC---CeeEEecCCccCc-ccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEe
Q 017542           18 FISSIKIDCYKCVNLREFPRISG---NVVELNLMCTPIE-EVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLD   93 (369)
Q Consensus        18 ~~~L~~L~l~~~~~l~~~~~~~~---~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~   93 (369)
                      +++|++|++++|.....+|..+.   +|++|++++|.++ .+|..+..+++|++|++++|...+.+|..+..+++|++|+
T Consensus       393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  472 (768)
T 3rgz_A          393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI  472 (768)
T ss_dssp             TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred             cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence            66788888888874446666554   8889999888887 6677788888999999998887778888888888999999


Q ss_pred             cCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCC-
Q 017542           94 LSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIP-  172 (369)
Q Consensus        94 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-  172 (369)
                      +++|.....+|..+..+++|++|++++|...+.+|.++..+++|++|++++|...+.+|..+..+++|+.|++++|.+. 
T Consensus       473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g  552 (768)
T 3rgz_A          473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG  552 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred             ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence            9888877778888888899999999888877788888888889999999888777778888888888888888888654 


Q ss_pred             CCCc----------------------------------------------------------------------ccccCC
Q 017542          173 QAPS----------------------------------------------------------------------SIVDLN  182 (369)
Q Consensus       173 ~~~~----------------------------------------------------------------------~l~~~~  182 (369)
                      .+|.                                                                      .+..++
T Consensus       553 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~  632 (768)
T 3rgz_A          553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG  632 (768)
T ss_dssp             BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB
T ss_pred             cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccc
Confidence            2332                                                                      234457


Q ss_pred             CCcEEeecCCCC-CCCCccccCCCCCcEEeccCCCCcc-CCCCCCCCCCCCEEEccCCcCC-ccchhhccCCcCcEeccc
Q 017542          183 KLETLSLFECRG-LVLPPLLSGLSSLKKLELGDCEIME-IPPDIGCLSSLESLNLSGNNIE-SLPTSISQLSRLRWLYLV  259 (369)
Q Consensus       183 ~L~~L~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~  259 (369)
                      +|+.|++++|.. +.+|..++.+++|+.|++++|.+.+ +|..++.+++|++|++++|+++ .+|..++.+++|++|+++
T Consensus       633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls  712 (768)
T 3rgz_A          633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS  712 (768)
T ss_dssp             CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred             cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECc
Confidence            899999999995 4788899999999999999999996 8888999999999999999999 889999999999999999


Q ss_pred             CCcccccCCCC--Ccccceecccccccc
Q 017542          260 NCVKLQSLPEL--PLLLVMLGASDCKRL  285 (369)
Q Consensus       260 ~~~~l~~~~~~--~~~L~~L~l~~c~~L  285 (369)
                      +|.--..+|..  +.++....+.+++.|
T Consensus       713 ~N~l~g~iP~~~~~~~~~~~~~~gN~~L  740 (768)
T 3rgz_A          713 NNNLSGPIPEMGQFETFPPAKFLNNPGL  740 (768)
T ss_dssp             SSEEEEECCSSSSGGGSCGGGGCSCTEE
T ss_pred             CCcccccCCCchhhccCCHHHhcCCchh
Confidence            99655666653  344555555555544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.96  E-value=4.4e-29  Score=247.13  Aligned_cols=263  Identities=17%  Similarity=0.224  Sum_probs=203.6

Q ss_pred             cCCccC---CeeEEecCCccCcc------------------cCccCC--CCCCCCEEeCcCCcccccccccccCCCCCcE
Q 017542           35 FPRISG---NVVELNLMCTPIEE------------------VPLSIE--CLPNLETLEMSFCNSLKRLSTSICKLKSLRS   91 (369)
Q Consensus        35 ~~~~~~---~L~~L~l~~~~~~~------------------l~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~   91 (369)
                      +|..++   +|++|++++|.++.                  +|..+.  .+++|++|++++|...+.+|..+.++++|++
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            555444   89999999999987                  888877  9999999999999888888988999999999


Q ss_pred             EecCCCc-CCc-cCchhhhccC-------ccceeeccccccccccch--hhhcCCCCCeEeecCCCCCCCCCcccCCCcc
Q 017542           92 LDLSYCI-NLE-SFPEILEKME-------LLEEINLEEASNIKELPS--SIENLEGLKQLKLTGCTKLGSLPESLGNLKS  160 (369)
Q Consensus        92 L~l~~~~-~~~-~~~~~~~~l~-------~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~  160 (369)
                      |++++|. ... .+|..++.++       +|++|++++|... .+|.  .+..+++|+.|++++|... .+| .++.+++
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~  596 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK  596 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSE
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCc
Confidence            9999987 554 5777776665       9999999987766 7887  8899999999999997655 777 7889999


Q ss_pred             hhhhccCcccCCCCCcccccCCC-CcEEeecCCCCCCCCccccCCC--CCcEEeccCCCCccCCC----CCC--CCCCCC
Q 017542          161 LERLHAGLLAIPQAPSSIVDLNK-LETLSLFECRGLVLPPLLSGLS--SLKKLELGDCEIMEIPP----DIG--CLSSLE  231 (369)
Q Consensus       161 L~~L~l~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~----~~~--~~~~L~  231 (369)
                      |+.|++++|.+..+|..+..+++ |+.|++++|....+|..+...+  +|+.|++++|.+.+.+.    .+.  ..++|+
T Consensus       597 L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~  676 (876)
T 4ecn_A          597 LTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAS  676 (876)
T ss_dssp             ESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEE
T ss_pred             ceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcC
Confidence            99999999999988888888888 9999999999878887766654  38899999888866322    122  345788


Q ss_pred             EEEccCCcCCccchhh-ccCCcCcEecccCCcccccCCCCC-----------cccceeccccccccccCCCc-----hhh
Q 017542          232 SLNLSGNNIESLPTSI-SQLSRLRWLYLVNCVKLQSLPELP-----------LLLVMLGASDCKRLQFLPEL-----TSC  294 (369)
Q Consensus       232 ~L~l~~~~l~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~-----------~~L~~L~l~~c~~L~~l~~~-----~~~  294 (369)
                      +|++++|.++.+|..+ ..+++|+.|++++| .++.+|...           ++|+.|++++| ++..++..     .++
T Consensus       677 ~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~  754 (876)
T 4ecn_A          677 TVTLSYNEIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPY  754 (876)
T ss_dssp             EEECCSSCCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTT
T ss_pred             EEEccCCcCCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCccchHHhhhccCCC
Confidence            8888888888777655 46788888888887 566666421           16777877776 44444422     245


Q ss_pred             hHHHhHHH
Q 017542          295 LEELDASI  302 (369)
Q Consensus       295 l~~l~~~~  302 (369)
                      |+.|++.+
T Consensus       755 L~~L~Ls~  762 (876)
T 4ecn_A          755 LSNMDVSY  762 (876)
T ss_dssp             CCEEECCS
T ss_pred             cCEEEeCC
Confidence            55555544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.96  E-value=1.1e-27  Score=223.86  Aligned_cols=272  Identities=19%  Similarity=0.165  Sum_probs=169.9

Q ss_pred             cCCccCCCCCCCCCccEEecCCCCCcccc-CCccC---CeeEEecCCccCc-cc-CccCCCCCCCCEEeCcCCccccccc
Q 017542            7 ESLRCFPQNIHFISSIKIDCYKCVNLREF-PRISG---NVVELNLMCTPIE-EV-PLSIECLPNLETLEMSFCNSLKRLS   80 (369)
Q Consensus         7 ~~l~~~p~~~~~~~L~~L~l~~~~~l~~~-~~~~~---~L~~L~l~~~~~~-~l-~~~~~~~~~L~~L~l~~~~~~~~~~   80 (369)
                      .+++.+|.  -.++|++|++++|. +..+ |..+.   +|++|+++++.+. .+ +..+..+++|++|++++|......|
T Consensus        20 ~~l~~lp~--l~~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~   96 (455)
T 3v47_A           20 RGLHQVPE--LPAHVNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLET   96 (455)
T ss_dssp             SCCSSCCC--CCTTCCEEECCSSC-CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECT
T ss_pred             CCcccCCC--CCCccCEEEecCCc-cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccCh
Confidence            35667776  24678888888887 5554 44444   7888888877775 44 3457778888888888877666667


Q ss_pred             ccccCCCCCcEEecCCCcCCccCchh--hhccCccceeeccccccccccchh-hhcCCCCCeEeecCCCCCCCCCcccC-
Q 017542           81 TSICKLKSLRSLDLSYCINLESFPEI--LEKMELLEEINLEEASNIKELPSS-IENLEGLKQLKLTGCTKLGSLPESLG-  156 (369)
Q Consensus        81 ~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~-  156 (369)
                      ..+.++++|++|++++|......+..  +..+++|++|++++|......|.. +..+++|++|++++|......+..+. 
T Consensus        97 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  176 (455)
T 3v47_A           97 GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN  176 (455)
T ss_dssp             TTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGG
T ss_pred             hhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhc
Confidence            77788888888888887665544433  777888888888877765555544 67788888888887665444333332 


Q ss_pred             ---------------------------------CCcchhhhccCcccCCCC-Ccc-------------------------
Q 017542          157 ---------------------------------NLKSLERLHAGLLAIPQA-PSS-------------------------  177 (369)
Q Consensus       157 ---------------------------------~l~~L~~L~l~~~~~~~~-~~~-------------------------  177 (369)
                                                       .+++|++|++++|.+... +..                         
T Consensus       177 l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  256 (455)
T 3v47_A          177 FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF  256 (455)
T ss_dssp             GTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT
T ss_pred             cccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc
Confidence                                             224566666666654310 000                         


Q ss_pred             ------------cc--cCCCCcEEeecCCCCCC-CCccccCCCCCcEEeccCCCCccC-CCCCCCCCCCCEEEccCCcCC
Q 017542          178 ------------IV--DLNKLETLSLFECRGLV-LPPLLSGLSSLKKLELGDCEIMEI-PPDIGCLSSLESLNLSGNNIE  241 (369)
Q Consensus       178 ------------l~--~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~  241 (369)
                                  +.  ..++|+.|++++|.... .+..+..+++|+.|++++|.+.++ +..+..+++|++|++++|.++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  336 (455)
T 3v47_A          257 GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG  336 (455)
T ss_dssp             TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccC
Confidence                        00  11356666666665333 344566666677777777666663 345566666677777666666


Q ss_pred             cc-chhhccCCcCcEecccCCcccccC-CC---CCcccceeccccc
Q 017542          242 SL-PTSISQLSRLRWLYLVNCVKLQSL-PE---LPLLLVMLGASDC  282 (369)
Q Consensus       242 ~~-~~~~~~~~~L~~L~l~~~~~l~~~-~~---~~~~L~~L~l~~c  282 (369)
                      .+ +..++.+++|++|++++| .++.+ +.   ..++|++|+++++
T Consensus       337 ~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N  381 (455)
T 3v47_A          337 SIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN  381 (455)
T ss_dssp             EECGGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CcChhHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCC
Confidence            44 345566666666666666 34433 22   2255666666654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=1.7e-27  Score=213.46  Aligned_cols=271  Identities=19%  Similarity=0.238  Sum_probs=216.4

Q ss_pred             CCcCCccCCCCC--CCC-----CccEEecCCCCCccccCCccC-CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcc
Q 017542            5 GCESLRCFPQNI--HFI-----SSIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNS   75 (369)
Q Consensus         5 ~c~~l~~~p~~~--~~~-----~L~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~   75 (369)
                      +...++++|..+  .++     +++.++++++. +..+|..+. ++++|+++++.++.++. .+..+++|++|++++|..
T Consensus        12 ~~~~l~~lp~~~~~~cp~~c~c~l~~l~~~~~~-l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l   90 (332)
T 2ft3_A           12 GIPDLDSLPPTYSAMCPFGCHCHLRVVQCSDLG-LKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI   90 (332)
T ss_dssp             -------------CCCCSSCEEETTEEECCSSC-CSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCccccCCCcccCCCCCCCcccCCEEECCCCC-ccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCcc
Confidence            345566777655  333     69999999988 889987665 99999999999998754 789999999999999877


Q ss_pred             cccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCC--CCCCc
Q 017542           76 LKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKL--GSLPE  153 (369)
Q Consensus        76 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~  153 (369)
                      ....+..+.++++|++|++++|... .+|..+.  ++|++|++++|......+..+..+++|++|++++|...  ...+.
T Consensus        91 ~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  167 (332)
T 2ft3_A           91 SKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG  167 (332)
T ss_dssp             CEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTT
T ss_pred             CccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcc
Confidence            7666788999999999999997654 5555443  89999999988766555567889999999999997653  24556


Q ss_pred             ccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCC-ccccCCCCCcEEeccCCCCccCCC-CCCCCCCCC
Q 017542          154 SLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLP-PLLSGLSSLKKLELGDCEIMEIPP-DIGCLSSLE  231 (369)
Q Consensus       154 ~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~  231 (369)
                      .+..+ +|++|++++|.+..+|..+.  ++|++|++++|....++ ..+..+++|+.|++++|.+.+++. .+..+++|+
T Consensus       168 ~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  244 (332)
T 2ft3_A          168 AFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLR  244 (332)
T ss_dssp             SSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCC
T ss_pred             cccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCC
Confidence            67777 99999999999999887664  79999999999977665 578899999999999999998654 578899999


Q ss_pred             EEEccCCcCCccchhhccCCcCcEecccCCcccccCCCC----------Ccccceecccccc
Q 017542          232 SLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPEL----------PLLLVMLGASDCK  283 (369)
Q Consensus       232 ~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~----------~~~L~~L~l~~c~  283 (369)
                      +|++++|.++.+|..+..+++|++|++++| .++.++..          ..+++.+++.+++
T Consensus       245 ~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~  305 (332)
T 2ft3_A          245 ELHLDNNKLSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNP  305 (332)
T ss_dssp             EEECCSSCCCBCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred             EEECCCCcCeecChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCc
Confidence            999999999999999999999999999998 57766531          2457788888776

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.96  E-value=2.2e-27  Score=213.96  Aligned_cols=270  Identities=23%  Similarity=0.284  Sum_probs=213.5

Q ss_pred             CCCCcCCccCCCCCCCCCccEEecCCCCCccccCCccC--CeeEEecCCccCcccCccCCCCCCCCEEeCcCCccccccc
Q 017542            3 MAGCESLRCFPQNIHFISSIKIDCYKCVNLREFPRISG--NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLS   80 (369)
Q Consensus         3 l~~c~~l~~~p~~~~~~~L~~L~l~~~~~l~~~~~~~~--~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~   80 (369)
                      +.++ .+..+|....+++|++|++++|. +..++....  +|++|+++++.++.++ .+..+++|++|++++|... .++
T Consensus        51 l~~~-~i~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~-~~~  126 (347)
T 4fmz_A           51 VAGE-KVASIQGIEYLTNLEYLNLNGNQ-ITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNIS-DIS  126 (347)
T ss_dssp             CCSS-CCCCCTTGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCC-CCG
T ss_pred             EeCC-ccccchhhhhcCCccEEEccCCc-cccchhhhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCccc-Cch
Confidence            4454 46677765589999999999997 777776332  9999999999999876 4889999999999997654 444


Q ss_pred             ccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcc
Q 017542           81 TSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKS  160 (369)
Q Consensus        81 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~  160 (369)
                      . +..+++|++|++++|......+. +..+++|++|++++|.... .+. +..+++|++|++++|.. ..++. +..+++
T Consensus       127 ~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~-~~~-~~~l~~L~~L~l~~n~l-~~~~~-~~~l~~  200 (347)
T 4fmz_A          127 P-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKD-VTP-IANLTDLYSLSLNYNQI-EDISP-LASLTS  200 (347)
T ss_dssp             G-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCSEEECTTSCC-CCCGG-GGGCTT
T ss_pred             h-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCC-chh-hccCCCCCEEEccCCcc-ccccc-ccCCCc
Confidence            4 78899999999999876665554 8899999999999776544 333 77899999999999754 44443 778889


Q ss_pred             hhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcC
Q 017542          161 LERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNI  240 (369)
Q Consensus       161 L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l  240 (369)
                      |+.+++++|.+..++. +..+++|++|++++|....++. +..+++|++|++++|.+..++ .+..+++|++|++++|.+
T Consensus       201 L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l  277 (347)
T 4fmz_A          201 LHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQI  277 (347)
T ss_dssp             CCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCC
T ss_pred             cceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCCcc
Confidence            9999999998887655 7788999999999998777776 788899999999999888763 477888999999999988


Q ss_pred             CccchhhccCCcCcEecccCCcccccCC-C---CCcccceeccccccccccC
Q 017542          241 ESLPTSISQLSRLRWLYLVNCVKLQSLP-E---LPLLLVMLGASDCKRLQFL  288 (369)
Q Consensus       241 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~---~~~~L~~L~l~~c~~L~~l  288 (369)
                      +.++ .+..+++|++|++++|. ++..+ .   ..++|+.|++++|+ +..+
T Consensus       278 ~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~-l~~~  326 (347)
T 4fmz_A          278 SDIS-VLNNLSQLNSLFLNNNQ-LGNEDMEVIGGLTNLTTLFLSQNH-ITDI  326 (347)
T ss_dssp             CCCG-GGGGCTTCSEEECCSSC-CCGGGHHHHHTCTTCSEEECCSSS-CCCC
T ss_pred             CCCh-hhcCCCCCCEEECcCCc-CCCcChhHhhccccCCEEEccCCc-cccc
Confidence            8875 57888999999999984 44433 1   34778888888886 4443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.96  E-value=1.2e-27  Score=215.80  Aligned_cols=300  Identities=20%  Similarity=0.228  Sum_probs=235.0

Q ss_pred             cCCCCCCCCCccEEecCCCCCccccCCc--cCCeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCC
Q 017542           11 CFPQNIHFISSIKIDCYKCVNLREFPRI--SGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKS   88 (369)
Q Consensus        11 ~~p~~~~~~~L~~L~l~~~~~l~~~~~~--~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~   88 (369)
                      .++....+++|+.|+++++. +..++..  +.+|++|+++++.++.++. +..+++|++|++++|... .++ .+..+++
T Consensus        36 ~~~~~~~l~~L~~L~l~~~~-i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~-~~~-~~~~l~~  111 (347)
T 4fmz_A           36 DVVTQEELESITKLVVAGEK-VASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKIT-DIS-ALQNLTN  111 (347)
T ss_dssp             SEECHHHHTTCSEEECCSSC-CCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTT
T ss_pred             CcccchhcccccEEEEeCCc-cccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCccc-Cch-HHcCCCc
Confidence            33444478999999999988 7787753  3399999999999998877 889999999999998544 444 4888999


Q ss_pred             CcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCc
Q 017542           89 LRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGL  168 (369)
Q Consensus        89 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  168 (369)
                      |++|++++|.... ++. +..+++|++|++++|.....++. +..+++|++|++++|... ..+. +..+++|++|++++
T Consensus       112 L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~-~~~~-~~~l~~L~~L~l~~  186 (347)
T 4fmz_A          112 LRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVK-DVTP-IANLTDLYSLSLNY  186 (347)
T ss_dssp             CSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCC-CCGG-GGGCTTCSEEECTT
T ss_pred             CCEEECcCCcccC-chh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcC-Cchh-hccCCCCCEEEccC
Confidence            9999999986544 444 88999999999998877766554 889999999999997644 3333 78899999999999


Q ss_pred             ccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccchhhc
Q 017542          169 LAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSIS  248 (369)
Q Consensus       169 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~  248 (369)
                      |.+..++. +..+++|+.+++++|....++. +..+++|++|++++|.+..++. +..+++|++|++++|.++.++ .+.
T Consensus       187 n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~  262 (347)
T 4fmz_A          187 NQIEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDIN-AVK  262 (347)
T ss_dssp             SCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGT
T ss_pred             Cccccccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCCh-hHh
Confidence            99988765 8889999999999999777665 7788999999999999998765 888999999999999999875 688


Q ss_pred             cCCcCcEecccCCcccccCCC--CCcccceeccccccccccCC----CchhhhHHHhHHHHHhhhccccccccCCCCCcE
Q 017542          249 QLSRLRWLYLVNCVKLQSLPE--LPLLLVMLGASDCKRLQFLP----ELTSCLEELDASILQALSNRTGERLSKHMSPVQ  322 (369)
Q Consensus       249 ~~~~L~~L~l~~~~~l~~~~~--~~~~L~~L~l~~c~~L~~l~----~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~  322 (369)
                      .+++|++|++++| .++.++.  ..++|+.|++++|+ +....    ...++++.|++.+++ ++...  .+.....+..
T Consensus       263 ~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~--~~~~l~~L~~  337 (347)
T 4fmz_A          263 DLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQ-LGNEDMEVIGGLTNLTTLFLSQNH-ITDIR--PLASLSKMDS  337 (347)
T ss_dssp             TCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC-CCGGGHHHHHTCTTCSEEECCSSS-CCCCG--GGGGCTTCSE
T ss_pred             cCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCc-CCCcChhHhhccccCCEEEccCCc-ccccc--Chhhhhccce
Confidence            9999999999999 6666653  34789999999884 33222    123456666666554 22221  1333444556


Q ss_pred             EEecCc
Q 017542          323 LIFANC  328 (369)
Q Consensus       323 ~~~~~c  328 (369)
                      +.+.+|
T Consensus       338 L~l~~N  343 (347)
T 4fmz_A          338 ADFANQ  343 (347)
T ss_dssp             ESSSCC
T ss_pred             eehhhh
Confidence            666665

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.96  E-value=3.4e-28  Score=228.76  Aligned_cols=273  Identities=21%  Similarity=0.196  Sum_probs=166.8

Q ss_pred             cCCccCCCCCCCCCccEEecCCCCCccccC-CccC---CeeEEecCCccCccc-CccCCCCCCCCEEeCcCCcccccccc
Q 017542            7 ESLRCFPQNIHFISSIKIDCYKCVNLREFP-RISG---NVVELNLMCTPIEEV-PLSIECLPNLETLEMSFCNSLKRLST   81 (369)
Q Consensus         7 ~~l~~~p~~~~~~~L~~L~l~~~~~l~~~~-~~~~---~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~   81 (369)
                      .+++.+|..+ .+++++|++++|. +..++ ..+.   +|++|++++|.++.+ |..+..+++|++|++++|......+.
T Consensus        21 ~~l~~ip~~~-~~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~   98 (477)
T 2id5_A           21 KRFVAVPEGI-PTETRLLDLGKNR-IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG   98 (477)
T ss_dssp             CCCSSCCSCC-CTTCSEEECCSSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTT
T ss_pred             CCcCcCCCCC-CCCCcEEECCCCc-cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcc
Confidence            3566677655 4578888888877 55553 3333   788888888877765 55677888888888888654433334


Q ss_pred             cccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcch
Q 017542           82 SICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSL  161 (369)
Q Consensus        82 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L  161 (369)
                      .+.++++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++++|......+..+..+++|
T Consensus        99 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  178 (477)
T 2id5_A           99 VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGL  178 (477)
T ss_dssp             SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTC
T ss_pred             cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCC
Confidence            56777888888888877666666777778888888888776655556667777778888877765443333446667777


Q ss_pred             hhhccCcccCCCCC-cccccCCCCcEEeecCC------------------------CCCCCCc-cccCCCCCcEEeccCC
Q 017542          162 ERLHAGLLAIPQAP-SSIVDLNKLETLSLFEC------------------------RGLVLPP-LLSGLSSLKKLELGDC  215 (369)
Q Consensus       162 ~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~------------------------~~~~~~~-~~~~~~~L~~L~l~~~  215 (369)
                      +.|++++|.+..++ ..+..+++|+.|++++|                        ....++. .+..+++|+.|++++|
T Consensus       179 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  258 (477)
T 2id5_A          179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN  258 (477)
T ss_dssp             CEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSS
T ss_pred             cEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCC
Confidence            77777777665443 24455555555555554                        4333332 3444555555555555


Q ss_pred             CCccCC-CCCCCCCCCCEEEccCCcCCcc-chhhccCCcCcEecccCCcccccCCC----CCcccceeccccc
Q 017542          216 EIMEIP-PDIGCLSSLESLNLSGNNIESL-PTSISQLSRLRWLYLVNCVKLQSLPE----LPLLLVMLGASDC  282 (369)
Q Consensus       216 ~~~~~~-~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~----~~~~L~~L~l~~c  282 (369)
                      .+..++ ..+..+++|++|++++|.++.+ +..+..+++|++|++++| .++.++.    ..++|+.|++.++
T Consensus       259 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N  330 (477)
T 2id5_A          259 PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSN  330 (477)
T ss_dssp             CCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSS
T ss_pred             cCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCC
Confidence            555532 2344555555555555555533 344455555555555555 3444432    1234555555444

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.96  E-value=2.2e-27  Score=223.29  Aligned_cols=258  Identities=20%  Similarity=0.229  Sum_probs=185.1

Q ss_pred             CCCCcCCccCCC-CC-CCCCccEEecCCCCCcccc-CCccC---CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcc
Q 017542            3 MAGCESLRCFPQ-NI-HFISSIKIDCYKCVNLREF-PRISG---NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNS   75 (369)
Q Consensus         3 l~~c~~l~~~p~-~~-~~~~L~~L~l~~~~~l~~~-~~~~~---~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~   75 (369)
                      +.++ +++.+++ .+ .+++|++|++++|. +..+ |..+.   +|++|++++|.++.++. .+..+++|++|++++|..
T Consensus        39 L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i  116 (477)
T 2id5_A           39 LGKN-RIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI  116 (477)
T ss_dssp             CCSS-CCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCC
T ss_pred             CCCC-ccceECHhHccCCCCCCEEECCCCc-cCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCcc
Confidence            3443 3555543 34 77888888888887 5554 44443   78888888888877765 367788888888888766


Q ss_pred             cccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCC----------
Q 017542           76 LKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGC----------  145 (369)
Q Consensus        76 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~----------  145 (369)
                      ....+..+..+++|++|++++|......+..+..+++|++|++++|......+..+..+++|+.|++++|          
T Consensus       117 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~  196 (477)
T 2id5_A          117 VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSF  196 (477)
T ss_dssp             CEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCS
T ss_pred             ccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhc
Confidence            6665666777777777777776655555556666777777777665544333334555555555555554          


Q ss_pred             --------------CCCCCCCcccCCCcchhhhccCcccCCCCC-cccccCCCCcEEeecCCCCCCCC-ccccCCCCCcE
Q 017542          146 --------------TKLGSLPESLGNLKSLERLHAGLLAIPQAP-SSIVDLNKLETLSLFECRGLVLP-PLLSGLSSLKK  209 (369)
Q Consensus       146 --------------~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~  209 (369)
                                    .....++.......+|++|++++|.+..++ ..+..+++|+.|++++|....++ ..+..+++|+.
T Consensus       197 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  276 (477)
T 2id5_A          197 KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQE  276 (477)
T ss_dssp             CSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCE
T ss_pred             ccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCE
Confidence                          433333333333446777777777777776 35778999999999999976665 46788999999


Q ss_pred             EeccCCCCccC-CCCCCCCCCCCEEEccCCcCCccch-hhccCCcCcEecccCCc
Q 017542          210 LELGDCEIMEI-PPDIGCLSSLESLNLSGNNIESLPT-SISQLSRLRWLYLVNCV  262 (369)
Q Consensus       210 L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~  262 (369)
                      |++++|.+..+ +..+..+++|++|++++|.++.++. .+..+++|++|++++|+
T Consensus       277 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          277 IQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP  331 (477)
T ss_dssp             EECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred             EECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence            99999999984 6678899999999999999998875 46889999999999995

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=4.4e-27  Score=210.52  Aligned_cols=257  Identities=19%  Similarity=0.196  Sum_probs=216.5

Q ss_pred             CccEEecCCCCCccccCCccC-CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCC
Q 017542           20 SSIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYC   97 (369)
Q Consensus        20 ~L~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~   97 (369)
                      +++.++++++. +..+|..++ .++.|+++++.++.++. .+..+++|++|++++|......|..+..+++|++|++++|
T Consensus        32 ~l~~l~~~~~~-l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  110 (330)
T 1xku_A           32 HLRVVQCSDLG-LEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN  110 (330)
T ss_dssp             ETTEEECTTSC-CCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             CCeEEEecCCC-ccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence            69999999988 888987665 99999999999998876 6889999999999998777666888999999999999997


Q ss_pred             cCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCC--CCCcccCCCcchhhhccCcccCCCCC
Q 017542           98 INLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLG--SLPESLGNLKSLERLHAGLLAIPQAP  175 (369)
Q Consensus        98 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~  175 (369)
                      ... .+|..+.  ++|++|++++|......+..+..+++|+.|++++|....  ..+..+..+++|++|++++|.+..+|
T Consensus       111 ~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~  187 (330)
T 1xku_A          111 QLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP  187 (330)
T ss_dssp             CCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC
T ss_pred             cCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC
Confidence            644 5555443  799999999887766666778999999999999976643  45567888999999999999999888


Q ss_pred             cccccCCCCcEEeecCCCCCCC-CccccCCCCCcEEeccCCCCccCCC-CCCCCCCCCEEEccCCcCCccchhhccCCcC
Q 017542          176 SSIVDLNKLETLSLFECRGLVL-PPLLSGLSSLKKLELGDCEIMEIPP-DIGCLSSLESLNLSGNNIESLPTSISQLSRL  253 (369)
Q Consensus       176 ~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L  253 (369)
                      ..+.  ++|++|++++|....+ +..+..+++|+.|++++|.+.+++. .+..+++|++|++++|.++.+|..+..+++|
T Consensus       188 ~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L  265 (330)
T 1xku_A          188 QGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYI  265 (330)
T ss_dssp             SSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSC
T ss_pred             cccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCc
Confidence            7664  8999999999997665 5678899999999999999998544 6788999999999999999999999999999


Q ss_pred             cEecccCCcccccCCCC----------Ccccceecccccc
Q 017542          254 RWLYLVNCVKLQSLPEL----------PLLLVMLGASDCK  283 (369)
Q Consensus       254 ~~L~l~~~~~l~~~~~~----------~~~L~~L~l~~c~  283 (369)
                      ++|++++| .++.++..          ..+++.+++.+.+
T Consensus       266 ~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~  304 (330)
T 1xku_A          266 QVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP  304 (330)
T ss_dssp             CEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             CEEECCCC-cCCccChhhcCCcccccccccccceEeecCc
Confidence            99999999 57766531          2456677777665

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.96  E-value=2.1e-28  Score=242.33  Aligned_cols=245  Identities=16%  Similarity=0.190  Sum_probs=129.3

Q ss_pred             CCCCC---CCCCccEEecCCCCCccccCCccC---CeeEEecCCcc-Ccc--cCccC-------CCCCCCCEEeCcCCcc
Q 017542           12 FPQNI---HFISSIKIDCYKCVNLREFPRISG---NVVELNLMCTP-IEE--VPLSI-------ECLPNLETLEMSFCNS   75 (369)
Q Consensus        12 ~p~~~---~~~~L~~L~l~~~~~l~~~~~~~~---~L~~L~l~~~~-~~~--l~~~~-------~~~~~L~~L~l~~~~~   75 (369)
                      +|..+   .+++|++|++++|.....+|..+.   +|++|++++|. ++.  +|..+       ..+++|++|++++|..
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L  560 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL  560 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred             CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence            55554   466677777766665556665443   66666666665 542  44432       2334666666666554


Q ss_pred             cccccc--cccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCC-CCeEeecCCCCCCCCC
Q 017542           76 LKRLST--SICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEG-LKQLKLTGCTKLGSLP  152 (369)
Q Consensus        76 ~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~  152 (369)
                      . .+|.  .+.++++|+.|++++|... .+| .++.+++|++|++++|... .+|..+..+++ |+.|++++|.. ..+|
T Consensus       561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L-~~lp  635 (876)
T 4ecn_A          561 E-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKL-KYIP  635 (876)
T ss_dssp             C-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCC-CSCC
T ss_pred             C-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCC-CcCc
Confidence            4 5555  5666666666666665544 555 5666666666666655544 55555666666 66666666543 2555


Q ss_pred             cccCCCcc--hhhhccCcccCCCCCcc----cc--cCCCCcEEeecCCCCCCCCccc-cCCCCCcEEeccCCCCccCCCC
Q 017542          153 ESLGNLKS--LERLHAGLLAIPQAPSS----IV--DLNKLETLSLFECRGLVLPPLL-SGLSSLKKLELGDCEIMEIPPD  223 (369)
Q Consensus       153 ~~~~~l~~--L~~L~l~~~~~~~~~~~----l~--~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~  223 (369)
                      ..+..++.  |+.|++++|.+.+.+..    +.  ..++|+.|++++|....+|..+ ..+++|+.|++++|.+..++..
T Consensus       636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~  715 (876)
T 4ecn_A          636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPEN  715 (876)
T ss_dssp             SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTT
T ss_pred             hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChH
Confidence            44444332  55555555555432111    11  2234555555555544444322 2444555555555555444433


Q ss_pred             CCCC--------CCCCEEEccCCcCCccchhhc--cCCcCcEecccCC
Q 017542          224 IGCL--------SSLESLNLSGNNIESLPTSIS--QLSRLRWLYLVNC  261 (369)
Q Consensus       224 ~~~~--------~~L~~L~l~~~~l~~~~~~~~--~~~~L~~L~l~~~  261 (369)
                      ....        ++|++|+|++|.++.+|..+.  .+++|+.|++++|
T Consensus       716 ~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N  763 (876)
T 4ecn_A          716 SLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN  763 (876)
T ss_dssp             SSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSS
T ss_pred             HhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCC
Confidence            2221        145555555555555544443  4555555555554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.96  E-value=2.5e-27  Score=217.02  Aligned_cols=240  Identities=16%  Similarity=0.134  Sum_probs=127.8

Q ss_pred             CCCCccEEecCCCCCccccCCcc----CCeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcccccccccccCCCCCcE
Q 017542           17 HFISSIKIDCYKCVNLREFPRIS----GNVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRS   91 (369)
Q Consensus        17 ~~~~L~~L~l~~~~~l~~~~~~~----~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~   91 (369)
                      .++++++++++++. ++.+|...    .+|++|+++++.++.++. .+..+++|++|++++|......+..+.++++|++
T Consensus        43 ~l~~l~~l~l~~~~-l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           43 TLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GGCCCSEEEEESCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccCCceEEEecCCc-hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence            45666777776666 66666432    366777776666665543 5666667777777766554444455666667777


Q ss_pred             EecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCc------------
Q 017542           92 LDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLK------------  159 (369)
Q Consensus        92 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~------------  159 (369)
                      |++++|......+..+..+++|++|++++|......+..+..+++|++|++++|.... ++  +..++            
T Consensus       122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~--~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CC--GGGCTTCSEEECCSSCC
T ss_pred             EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-cc--cccccccceeecccccc
Confidence            7776654443333334666677777776665544444556666666766666654322 11  11122            


Q ss_pred             ----------------------------chhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCC-CccccCCCCCcEE
Q 017542          160 ----------------------------SLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVL-PPLLSGLSSLKKL  210 (369)
Q Consensus       160 ----------------------------~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L  210 (369)
                                                  +|+.|++++|.+... ..+..+++|++|++++|....+ +..+..+++|+.|
T Consensus       199 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  277 (390)
T 3o6n_A          199 STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL  277 (390)
T ss_dssp             SEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred             cccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEE
Confidence                                        333333333333332 2344444555555555543322 3344445555555


Q ss_pred             eccCCCCccCCCCCCCCCCCCEEEccCCcCCccchhhccCCcCcEecccCC
Q 017542          211 ELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNC  261 (369)
Q Consensus       211 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~  261 (369)
                      ++++|.+..++.....+++|++|++++|.++.+|..+..+++|++|++++|
T Consensus       278 ~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N  328 (390)
T 3o6n_A          278 YISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN  328 (390)
T ss_dssp             ECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSS
T ss_pred             ECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCC
Confidence            555555544444444445555555555555555444444555555555554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.95  E-value=2.1e-27  Score=225.82  Aligned_cols=137  Identities=17%  Similarity=0.132  Sum_probs=101.2

Q ss_pred             CCCCCcCCccCCCCCCCCCccEEecCCCCCccccC-Ccc---CCeeEEecCCccCccc-CccCCCCCCCCEEeCcCCccc
Q 017542            2 IMAGCESLRCFPQNIHFISSIKIDCYKCVNLREFP-RIS---GNVVELNLMCTPIEEV-PLSIECLPNLETLEMSFCNSL   76 (369)
Q Consensus         2 ~l~~c~~l~~~p~~~~~~~L~~L~l~~~~~l~~~~-~~~---~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~   76 (369)
                      +++++ +++.+|..+. ++|++|++++|. +..++ ..+   .+|++|++++|.++.+ |..+..+++|++|++++|...
T Consensus         6 ~ls~n-~l~~ip~~~~-~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~   82 (520)
T 2z7x_B            6 DRSKN-GLIHVPKDLS-QKTTILNISQNY-ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV   82 (520)
T ss_dssp             ECTTS-CCSSCCCSCC-TTCSEEECCSSC-CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC
T ss_pred             ecCCC-Cccccccccc-ccccEEECCCCc-ccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee
Confidence            34554 5778887765 889999999988 66654 333   3899999999998876 567888999999999997554


Q ss_pred             ccccccccCCCCCcEEecCCCcCCc-cCchhhhccCccceeeccccccccccchhhhcCCCC--CeEeecCCCC
Q 017542           77 KRLSTSICKLKSLRSLDLSYCINLE-SFPEILEKMELLEEINLEEASNIKELPSSIENLEGL--KQLKLTGCTK  147 (369)
Q Consensus        77 ~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~  147 (369)
                       .+|..  .+++|++|++++|.... .+|..++.+++|++|++++|....   ..+..+++|  ++|++++|..
T Consensus        83 -~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           83 -KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             -EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred             -ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccc
Confidence             66665  78999999999987665 467888889999999988776543   234445555  6666666544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.95  E-value=5.4e-28  Score=231.37  Aligned_cols=140  Identities=16%  Similarity=0.159  Sum_probs=86.7

Q ss_pred             CCccCCCCCCCCCccEEecCCCCCcccc-CCccC---CeeEEecCCccCcccC-ccCCCCCCCCEEeCcCCccccccccc
Q 017542            8 SLRCFPQNIHFISSIKIDCYKCVNLREF-PRISG---NVVELNLMCTPIEEVP-LSIECLPNLETLEMSFCNSLKRLSTS   82 (369)
Q Consensus         8 ~l~~~p~~~~~~~L~~L~l~~~~~l~~~-~~~~~---~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~   82 (369)
                      +++++|..+ .++|++|++++|. +..+ +..+.   +|++|++++|.++.++ ..+..+++|++|++++|...+..+..
T Consensus        16 ~l~~ip~~~-~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~   93 (549)
T 2z81_A           16 SFTSIPSGL-TAAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSW   93 (549)
T ss_dssp             CCSSCCSCC-CTTCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHH
T ss_pred             ccccccccC-CCCccEEECcCCc-cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHH
Confidence            566677655 3667777777777 5544 33333   7777777777777554 45677777777777776655544445


Q ss_pred             ccCCCCCcEEecCCCcCCc-cCchhhhccCccceeeccccccccccc-hhhhcCCCCCeEeecCCCCCC
Q 017542           83 ICKLKSLRSLDLSYCINLE-SFPEILEKMELLEEINLEEASNIKELP-SSIENLEGLKQLKLTGCTKLG  149 (369)
Q Consensus        83 ~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~  149 (369)
                      ++++++|++|++++|.... ..+..++.+++|++|++++|...+.++ ..+..+++|++|++++|...+
T Consensus        94 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  162 (549)
T 2z81_A           94 FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN  162 (549)
T ss_dssp             HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence            6677777777777765443 234556666777777776665444433 345555666666665554433

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.95  E-value=7.6e-27  Score=226.02  Aligned_cols=244  Identities=19%  Similarity=0.144  Sum_probs=127.9

Q ss_pred             CCCCccEEecCCCCCcccc-CCccC---CeeEEecCCccCccc-CccCCCCCCCCEEeCcCCcccccccccccCCCCCcE
Q 017542           17 HFISSIKIDCYKCVNLREF-PRISG---NVVELNLMCTPIEEV-PLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRS   91 (369)
Q Consensus        17 ~~~~L~~L~l~~~~~l~~~-~~~~~---~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~   91 (369)
                      .+++|++|++++|. +..+ |..+.   +|++|++++|.++.+ |..+..+++|++|++++|......+..+..+++|++
T Consensus        55 ~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~  133 (606)
T 3t6q_A           55 RLINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES  133 (606)
T ss_dssp             TCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCE
T ss_pred             cCccceEEECCCCc-cceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccE
Confidence            55566666666655 3332 33332   566666666655543 334555666666666665444333344555566666


Q ss_pred             EecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCC--eEeecCCCCCC--------------------
Q 017542           92 LDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLK--QLKLTGCTKLG--------------------  149 (369)
Q Consensus        92 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~--~L~l~~~~~~~--------------------  149 (369)
                      |++++|.........+..+++|++|++++|......+..+..+++|+  .|++++|...+                    
T Consensus       134 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~  213 (606)
T 3t6q_A          134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ  213 (606)
T ss_dssp             EECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCS
T ss_pred             EECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCch
Confidence            66666544332112222356666666665544444444455555555  44444433221                    


Q ss_pred             -------------------------------------------------------CCCcccCCCcchhhhccCcccCCCC
Q 017542          150 -------------------------------------------------------SLPESLGNLKSLERLHAGLLAIPQA  174 (369)
Q Consensus       150 -------------------------------------------------------~~~~~~~~l~~L~~L~l~~~~~~~~  174 (369)
                                                                             ..+..+..+++|++|++++|.+..+
T Consensus       214 ~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l  293 (606)
T 3t6q_A          214 NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL  293 (606)
T ss_dssp             CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCC
T ss_pred             hHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCC
Confidence                                                                   1112244555666666666666666


Q ss_pred             CcccccCCCCcEEeecCCCCCCC-CccccCCCCCcEEeccCCCCcc-CCC-CCCCCCCCCEEEccCCcCCcc---chhhc
Q 017542          175 PSSIVDLNKLETLSLFECRGLVL-PPLLSGLSSLKKLELGDCEIME-IPP-DIGCLSSLESLNLSGNNIESL---PTSIS  248 (369)
Q Consensus       175 ~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~-~~~-~~~~~~~L~~L~l~~~~l~~~---~~~~~  248 (369)
                      |..+..+++|++|++++|....+ +..+..+++|+.|++++|.+.. ++. .+..+++|++|++++|.++.+   +..++
T Consensus       294 p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  373 (606)
T 3t6q_A          294 PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR  373 (606)
T ss_dssp             CSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTT
T ss_pred             ChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcc
Confidence            66666666666666666664443 2345555555555555555542 322 245556666666666665533   34455


Q ss_pred             cCCcCcEecccCC
Q 017542          249 QLSRLRWLYLVNC  261 (369)
Q Consensus       249 ~~~~L~~L~l~~~  261 (369)
                      .+++|++|++++|
T Consensus       374 ~l~~L~~L~l~~n  386 (606)
T 3t6q_A          374 NLSHLQSLNLSYN  386 (606)
T ss_dssp             TCTTCCEEECCSC
T ss_pred             cCCCCCEEECCCC
Confidence            5666666666665

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.95  E-value=2.4e-28  Score=216.93  Aligned_cols=247  Identities=21%  Similarity=0.247  Sum_probs=192.4

Q ss_pred             CCeeEEecCCccCc---ccCccCCCCCCCCEEeCcC-CcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccce
Q 017542           40 GNVVELNLMCTPIE---EVPLSIECLPNLETLEMSF-CNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEE  115 (369)
Q Consensus        40 ~~L~~L~l~~~~~~---~l~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  115 (369)
                      ++++.|+++++.++   .+|..+..+++|++|++++ |...+.+|..+.++++|++|++++|.....+|..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            47888888888876   4777788888888888885 6666677777888888888888887766677888888888888


Q ss_pred             eeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCc-chhhhccCcccCC-CCCcccccCCCCcEEeecCCC
Q 017542          116 INLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLK-SLERLHAGLLAIP-QAPSSIVDLNKLETLSLFECR  193 (369)
Q Consensus       116 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~  193 (369)
                      |++++|.....+|..+..+++|++|++++|...+.+|..+..++ +|++|++++|.+. .+|..+..++ |+.|++++|.
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            88887776667777888888888888888766557777777777 8888888888877 5667777776 8888888888


Q ss_pred             CC-CCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCC-ccchhhccCCcCcEecccCCcccccCCCC-
Q 017542          194 GL-VLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIE-SLPTSISQLSRLRWLYLVNCVKLQSLPEL-  270 (369)
Q Consensus       194 ~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-  270 (369)
                      .. ..+..+..+++|+.|++++|.+...+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.--..+|.. 
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~  288 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG  288 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence            44 4556778888888888888888765444677788888888888888 77888888888888888888433355543 


Q ss_pred             -Ccccceecccccccccc
Q 017542          271 -PLLLVMLGASDCKRLQF  287 (369)
Q Consensus       271 -~~~L~~L~l~~c~~L~~  287 (369)
                       .++|+.+++.+++.+..
T Consensus       289 ~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          289 NLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             TGGGSCGGGTCSSSEEES
T ss_pred             cccccChHHhcCCCCccC
Confidence             36677788887776554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.95  E-value=1.4e-27  Score=228.42  Aligned_cols=327  Identities=16%  Similarity=0.136  Sum_probs=187.7

Q ss_pred             CCCCCcCCccCC-CCC-CCCCccEEecCCCCCccccC-CccC---CeeEEecCCccCcccCcc-CCCCCCCCEEeCcCCc
Q 017542            2 IMAGCESLRCFP-QNI-HFISSIKIDCYKCVNLREFP-RISG---NVVELNLMCTPIEEVPLS-IECLPNLETLEMSFCN   74 (369)
Q Consensus         2 ~l~~c~~l~~~p-~~~-~~~~L~~L~l~~~~~l~~~~-~~~~---~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~~~   74 (369)
                      ++.++. ++.++ ..+ .+++|++|++++|. +..++ ..+.   +|++|++++|.++.++.. +..+++|++|++++|.
T Consensus        32 ~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~  109 (549)
T 2z81_A           32 DLSFNK-ITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP  109 (549)
T ss_dssp             ECCSSC-CCEECSSTTSSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCC
T ss_pred             ECcCCc-cCccChhhhhcCCcccEEECCCCC-cCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCc
Confidence            345553 55554 344 78889999998887 55554 4443   888888888888877654 7888888888888876


Q ss_pred             ccc-cccccccCCCCCcEEecCCCcCCccCc-hhhhccCccceeeccccccccccchhhh--------------------
Q 017542           75 SLK-RLSTSICKLKSLRSLDLSYCINLESFP-EILEKMELLEEINLEEASNIKELPSSIE--------------------  132 (369)
Q Consensus        75 ~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~--------------------  132 (369)
                      ... ..+..+.++++|++|++++|.....++ ..+..+++|++|++++|......+..+.                    
T Consensus       110 l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  189 (549)
T 2z81_A          110 YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE  189 (549)
T ss_dssp             CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHH
T ss_pred             ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccch
Confidence            554 345567778888888888876444444 5677777777777777665544444333                    


Q ss_pred             ----cCCCCCeEeecCCCCCCCC--Ccc----------------------------------------------------
Q 017542          133 ----NLEGLKQLKLTGCTKLGSL--PES----------------------------------------------------  154 (369)
Q Consensus       133 ----~l~~L~~L~l~~~~~~~~~--~~~----------------------------------------------------  154 (369)
                          .+++|++|++++|...+..  +..                                                    
T Consensus       190 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~  269 (549)
T 2z81_A          190 IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDF  269 (549)
T ss_dssp             HHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCC
T ss_pred             hhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccc
Confidence                3456666666654432210  000                                                    


Q ss_pred             -------cCC-----------------------------CcchhhhccCcccCCCCCccc-ccCCCCcEEeecCCCCCC-
Q 017542          155 -------LGN-----------------------------LKSLERLHAGLLAIPQAPSSI-VDLNKLETLSLFECRGLV-  196 (369)
Q Consensus       155 -------~~~-----------------------------l~~L~~L~l~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~-  196 (369)
                             +..                             .++|+.+++++|.+..+|..+ ..+++|+.|++++|.... 
T Consensus       270 ~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~  349 (549)
T 2z81_A          270 NPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEE  349 (549)
T ss_dssp             CCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHH
T ss_pred             cccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccc
Confidence                   000                             123344444444444455444 356777777777776432 


Q ss_pred             C---CccccCCCCCcEEeccCCCCccCC---CCCCCCCCCCEEEccCCcCCccchhhccCCcCcEecccCCcccccCC--
Q 017542          197 L---PPLLSGLSSLKKLELGDCEIMEIP---PDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLP--  268 (369)
Q Consensus       197 ~---~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~--  268 (369)
                      +   +..++.+++|+.|++++|.+.+++   ..+..+++|++|++++|.++.+|..++.+++|++|++++| .++.++  
T Consensus       350 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N-~l~~l~~~  428 (549)
T 2z81_A          350 YLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSST-GIRVVKTC  428 (549)
T ss_dssp             HHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTS-CCSCCCTT
T ss_pred             cccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCC-Ccccccch
Confidence            1   122455666666666666665532   2245566666666666666666665556666666666665 344433  


Q ss_pred             -------------------CCCcccceeccccccccccCCCc--hhhhHHHhHHHHHhhhccccccccCCCCCcEEEecC
Q 017542          269 -------------------ELPLLLVMLGASDCKRLQFLPEL--TSCLEELDASILQALSNRTGERLSKHMSPVQLIFAN  327 (369)
Q Consensus       269 -------------------~~~~~L~~L~l~~c~~L~~l~~~--~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  327 (369)
                                         ...++|+.|+++++ +++.++..  .++++.|+++++ .++......+.....+..+.+.+
T Consensus       429 ~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~  506 (549)
T 2z81_A          429 IPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPDASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHT  506 (549)
T ss_dssp             SCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCCGGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCS
T ss_pred             hcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCCcccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecC
Confidence                               23344555555544 33334322  234555555443 22222222334444556777777


Q ss_pred             ccCcch
Q 017542          328 CLKLNE  333 (369)
Q Consensus       328 c~~l~~  333 (369)
                      ++-..+
T Consensus       507 N~~~~~  512 (549)
T 2z81_A          507 NPWDCS  512 (549)
T ss_dssp             SCBCCC
T ss_pred             CCccCC
Confidence            754443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.95  E-value=7.2e-28  Score=213.79  Aligned_cols=247  Identities=18%  Similarity=0.193  Sum_probs=216.1

Q ss_pred             CCccEEecCCCCCcc--ccCCccC---CeeEEecC-CccCc-ccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcE
Q 017542           19 ISSIKIDCYKCVNLR--EFPRISG---NVVELNLM-CTPIE-EVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRS   91 (369)
Q Consensus        19 ~~L~~L~l~~~~~l~--~~~~~~~---~L~~L~l~-~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~   91 (369)
                      .+++.|+++++....  .+|..+.   +|++|+++ ++.+. .+|..+..+++|++|++++|...+.+|..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            579999999998444  6776655   99999998 47776 78888999999999999998887788888999999999


Q ss_pred             EecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCC-CCCeEeecCCCCCCCCCcccCCCcchhhhccCccc
Q 017542           92 LDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLE-GLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLA  170 (369)
Q Consensus        92 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  170 (369)
                      |++++|.....+|..+..+++|++|++++|.....+|..+..++ +|++|++++|...+..|..+..++ |++|++++|.
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            99999987778899999999999999999887778888899998 999999999877767888888887 9999999999


Q ss_pred             CC-CCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCcc-CCCCCCCCCCCCEEEccCCcCC-ccchhh
Q 017542          171 IP-QAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIME-IPPDIGCLSSLESLNLSGNNIE-SLPTSI  247 (369)
Q Consensus       171 ~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~-~~~~~~  247 (369)
                      +. ..+..+..+++|+.|++++|.....+..+..+++|++|++++|.+.+ +|..+..+++|++|++++|.++ .+|.. 
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-  287 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-  287 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-
Confidence            88 45677889999999999999966555557888999999999999985 7888899999999999999998 66654 


Q ss_pred             ccCCcCcEecccCCcccccC
Q 017542          248 SQLSRLRWLYLVNCVKLQSL  267 (369)
Q Consensus       248 ~~~~~L~~L~l~~~~~l~~~  267 (369)
                      ..+++|+.+++++|+.+...
T Consensus       288 ~~l~~L~~l~l~~N~~lc~~  307 (313)
T 1ogq_A          288 GNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             TTGGGSCGGGTCSSSEEEST
T ss_pred             ccccccChHHhcCCCCccCC
Confidence            88999999999999866654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.95  E-value=5.5e-27  Score=218.42  Aligned_cols=267  Identities=18%  Similarity=0.168  Sum_probs=147.7

Q ss_pred             CCCCccEEecCCCCCccccCCcc--CCeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEec
Q 017542           17 HFISSIKIDCYKCVNLREFPRIS--GNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDL   94 (369)
Q Consensus        17 ~~~~L~~L~l~~~~~l~~~~~~~--~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l   94 (369)
                      .+++|++|++++|. +..+|...  .+|++|++++|.++.++  +..+++|++|++++|...+ ++  ++.+++|++|++
T Consensus        40 ~l~~L~~L~Ls~n~-l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L  113 (457)
T 3bz5_A           40 QLATLTSLDCHNSS-ITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNC  113 (457)
T ss_dssp             HHTTCCEEECCSSC-CCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEEC
T ss_pred             HcCCCCEEEccCCC-cccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEEC
Confidence            45666677776665 55555322  26666677666666654  5666666777776655333 22  556666666766


Q ss_pred             CCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCC
Q 017542           95 SYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQA  174 (369)
Q Consensus        95 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  174 (369)
                      ++|.... ++  ++.+++|++|++++|.... ++  +..+++|++|++++|...+.+  .+..+++|++|++++|.++.+
T Consensus       114 ~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l  185 (457)
T 3bz5_A          114 DTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL  185 (457)
T ss_dssp             CSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC
T ss_pred             CCCcCCe-ec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee
Confidence            6654333 33  5666666666666554333 22  455666666666666555544  255666666666666666665


Q ss_pred             CcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccchhhccCCc--
Q 017542          175 PSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSR--  252 (369)
Q Consensus       175 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~--  252 (369)
                      +  +..+++|+.|++++|....++  +..+++|+.|++++|.+.+++  +..+++|++|++++|.++.++  .+.+++  
T Consensus       186 ~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~  257 (457)
T 3bz5_A          186 D--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLT  257 (457)
T ss_dssp             C--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCC
T ss_pred             c--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC--HHHCCCCC
Confidence            4  555666666666666655442  555666666666666666654  455666666666666665444  222222  


Q ss_pred             --------CcEecccCCcccccCCC-CCcccceeccccccccccCCCchhhhHHHhHHHHHh
Q 017542          253 --------LRWLYLVNCVKLQSLPE-LPLLLVMLGASDCKRLQFLPELTSCLEELDASILQA  305 (369)
Q Consensus       253 --------L~~L~l~~~~~l~~~~~-~~~~L~~L~l~~c~~L~~l~~~~~~l~~l~~~~~~~  305 (369)
                              |+.|++++|..+..+|. ..++|+.|++++|+.+..++...+.++.+++..+++
T Consensus       258 ~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~  319 (457)
T 3bz5_A          258 TLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPK  319 (457)
T ss_dssp             EEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTT
T ss_pred             EEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhccc
Confidence                    23334444433333321 124455555555554444444444444444444433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.95  E-value=9.8e-27  Score=224.49  Aligned_cols=264  Identities=16%  Similarity=0.102  Sum_probs=155.3

Q ss_pred             CCCCccEEecCCCCCccccCCc----cCCeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcccccccccccCCCCCcE
Q 017542           17 HFISSIKIDCYKCVNLREFPRI----SGNVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRS   91 (369)
Q Consensus        17 ~~~~L~~L~l~~~~~l~~~~~~----~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~   91 (369)
                      .+++++.++++++. +..+|..    +.+|++|+++++.++.++. .+..+++|++|++++|......+..++.+++|++
T Consensus        49 ~l~~l~~l~l~~~~-l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           49 TLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GGCCCSEEEESSCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCCceEEEeeCCC-CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence            44555666666555 5555542    1256666666666655443 4555666666666665544444444555666666


Q ss_pred             EecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCccc----------------
Q 017542           92 LDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESL----------------  155 (369)
Q Consensus        92 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~----------------  155 (369)
                      |++++|......+..++.+++|++|++++|......+..+..+++|++|++++|.........+                
T Consensus       128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l  207 (597)
T 3oja_B          128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL  207 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEE
T ss_pred             EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccc
Confidence            6666654443333334556666666666555444444455556666666665543322110000                


Q ss_pred             CC---------------------CcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCC-CccccCCCCCcEEecc
Q 017542          156 GN---------------------LKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVL-PPLLSGLSSLKKLELG  213 (369)
Q Consensus       156 ~~---------------------l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~  213 (369)
                      ..                     .++|+.|++++|.+... ..+..+++|+.|++++|....+ |..+..+++|+.|+++
T Consensus       208 ~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  286 (597)
T 3oja_B          208 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS  286 (597)
T ss_dssp             ECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECT
T ss_pred             cCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECC
Confidence            01                     12355555555555543 4566677777777777775443 5567777778888888


Q ss_pred             CCCCccCCCCCCCCCCCCEEEccCCcCCccchhhccCCcCcEecccCCcccccCC-CCCcccceecccccc
Q 017542          214 DCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLP-ELPLLLVMLGASDCK  283 (369)
Q Consensus       214 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~L~~L~l~~c~  283 (369)
                      +|.+.+++.....+++|++|++++|.++.+|..+..+++|++|++++|. ++.++ ..+++|+.|++++++
T Consensus       287 ~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          287 NNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKNLTLSHND  356 (597)
T ss_dssp             TSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC-CCCCCCCTTCCCSEEECCSSC
T ss_pred             CCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCC-CCCcChhhcCCCCEEEeeCCC
Confidence            8777777666666778888888888777777777777788888887773 44443 234667777776654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.95  E-value=1.6e-26  Score=223.80  Aligned_cols=260  Identities=22%  Similarity=0.207  Sum_probs=163.7

Q ss_pred             CccEEecCCCCCccccCCc-cC---CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecC
Q 017542           20 SSIKIDCYKCVNLREFPRI-SG---NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLS   95 (369)
Q Consensus        20 ~L~~L~l~~~~~l~~~~~~-~~---~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~   95 (369)
                      +|+.|++++|. +..++.. +.   +|++|+++++.++.+|..+..+++|++|++++|......+..+..+++|++|+++
T Consensus       255 ~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  333 (606)
T 3t6q_A          255 SVESINLQKHY-FFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK  333 (606)
T ss_dssp             EEEEEECTTCC-CSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred             ceeEEEeecCc-cCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence            57777777776 5554432 32   7777777777777777667777777777777766555555566667777777777


Q ss_pred             CCcCCccCc-hhhhccCccceeecccccccccc--chhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCC
Q 017542           96 YCINLESFP-EILEKMELLEEINLEEASNIKEL--PSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIP  172 (369)
Q Consensus        96 ~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  172 (369)
                      +|.....++ ..+..+++|++|++++|......  +..+..+++|++|++++|......+..+..+++|++|++++|.+.
T Consensus       334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  413 (606)
T 3t6q_A          334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK  413 (606)
T ss_dssp             SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred             CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence            765554443 34667777777777766554433  455667777777777776555555556666777777777777665


Q ss_pred             CCC--cccccCCCCcEEeecCCCCCCC-CccccCCCCCcEEeccCCCCcc--CC--CCCCCCCCCCEEEccCCcCCcc-c
Q 017542          173 QAP--SSIVDLNKLETLSLFECRGLVL-PPLLSGLSSLKKLELGDCEIME--IP--PDIGCLSSLESLNLSGNNIESL-P  244 (369)
Q Consensus       173 ~~~--~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~--~~--~~~~~~~~L~~L~l~~~~l~~~-~  244 (369)
                      ...  ..+..+++|+.|++++|..... +..+..+++|++|++++|.+.+  ++  ..+..+++|++|++++|.++.+ |
T Consensus       414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  493 (606)
T 3t6q_A          414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ  493 (606)
T ss_dssp             CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT
T ss_pred             CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh
Confidence            432  2366667777777777764433 4456667777777777777654  11  3356667777777777777644 4


Q ss_pred             hhhccCCcCcEecccCCcccccC-CCC---Ccccceeccccc
Q 017542          245 TSISQLSRLRWLYLVNCVKLQSL-PEL---PLLLVMLGASDC  282 (369)
Q Consensus       245 ~~~~~~~~L~~L~l~~~~~l~~~-~~~---~~~L~~L~l~~c  282 (369)
                      ..++.+++|++|++++|. ++.+ +..   .++| .|+++++
T Consensus       494 ~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L-~L~L~~N  533 (606)
T 3t6q_A          494 HAFTSLKMMNHVDLSHNR-LTSSSIEALSHLKGI-YLNLASN  533 (606)
T ss_dssp             TTTTTCTTCCEEECCSSC-CCGGGGGGGTTCCSC-EEECCSS
T ss_pred             hhhccccCCCEEECCCCc-cCcCChhHhCccccc-EEECcCC
Confidence            556677777777777763 3332 222   2344 5555555

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.95  E-value=2e-26  Score=215.43  Aligned_cols=280  Identities=19%  Similarity=0.136  Sum_probs=217.0

Q ss_pred             CCCCCcCCccC-CCCC-CCCCccEEecCCCCCccccC-CccC---CeeEEecCCccCccc-CccCCCCCCCCEEeCcCCc
Q 017542            2 IMAGCESLRCF-PQNI-HFISSIKIDCYKCVNLREFP-RISG---NVVELNLMCTPIEEV-PLSIECLPNLETLEMSFCN   74 (369)
Q Consensus         2 ~l~~c~~l~~~-p~~~-~~~~L~~L~l~~~~~l~~~~-~~~~---~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~   74 (369)
                      +++++ .++.+ |..+ .+++|++|++++|.....++ ..+.   +|++|++++|.++.+ |..+..+++|++|++++|.
T Consensus        36 ~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  114 (455)
T 3v47_A           36 DLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCN  114 (455)
T ss_dssp             ECCSS-CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSC
T ss_pred             EecCC-ccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCC
Confidence            34554 45555 5555 89999999999998544654 3333   999999999999866 6678999999999999987


Q ss_pred             cccccccc--ccCCCCCcEEecCCCcCCccCchh-hhccCccceeeccccccccccchhhhc------------------
Q 017542           75 SLKRLSTS--ICKLKSLRSLDLSYCINLESFPEI-LEKMELLEEINLEEASNIKELPSSIEN------------------  133 (369)
Q Consensus        75 ~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~------------------  133 (369)
                      ..+..+..  +..+++|++|++++|......|.. +..+++|++|++++|......+..+..                  
T Consensus       115 l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~  194 (455)
T 3v47_A          115 LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQD  194 (455)
T ss_dssp             CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTT
T ss_pred             CCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccc
Confidence            76655543  788999999999998777665654 789999999999988766554444433                  


Q ss_pred             ----------------CCCCCeEeecCCCCCCCCCcc-------------------------------------cC--CC
Q 017542          134 ----------------LEGLKQLKLTGCTKLGSLPES-------------------------------------LG--NL  158 (369)
Q Consensus       134 ----------------l~~L~~L~l~~~~~~~~~~~~-------------------------------------~~--~l  158 (369)
                                      +++|++|++++|......+..                                     +.  ..
T Consensus       195 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (455)
T 3v47_A          195 MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEA  274 (455)
T ss_dssp             CSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTT
T ss_pred             cchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccc
Confidence                            356888888876543211110                                     11  12


Q ss_pred             cchhhhccCcccCCCC-CcccccCCCCcEEeecCCCCCCC-CccccCCCCCcEEeccCCCCccC-CCCCCCCCCCCEEEc
Q 017542          159 KSLERLHAGLLAIPQA-PSSIVDLNKLETLSLFECRGLVL-PPLLSGLSSLKKLELGDCEIMEI-PPDIGCLSSLESLNL  235 (369)
Q Consensus       159 ~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l  235 (369)
                      ++|+++++++|.+... +..+..+++|++|++++|....+ +..+..+++|+.|++++|.+.++ +..+..+++|++|++
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  354 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL  354 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence            5788999999988854 56788899999999999997665 45788999999999999999885 556788999999999


Q ss_pred             cCCcCCcc-chhhccCCcCcEecccCCcccccCCC----CCcccceecccccc
Q 017542          236 SGNNIESL-PTSISQLSRLRWLYLVNCVKLQSLPE----LPLLLVMLGASDCK  283 (369)
Q Consensus       236 ~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~----~~~~L~~L~l~~c~  283 (369)
                      ++|.++.+ |..+..+++|++|++++| .++.++.    ..++|+.|++++++
T Consensus       355 s~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          355 SYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCcccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCC
Confidence            99999966 678899999999999998 6777664    34688999998875

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=4.2e-27  Score=210.13  Aligned_cols=218  Identities=28%  Similarity=0.422  Sum_probs=154.1

Q ss_pred             CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccc
Q 017542           41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE  120 (369)
Q Consensus        41 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  120 (369)
                      +++.|+++++.++.+|..+..+++|++|++++|... .+|..+..+++|++|++++|... .+|..+..+++|++|++++
T Consensus        82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~  159 (328)
T 4fcg_A           82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA  159 (328)
T ss_dssp             TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEE
T ss_pred             ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCC
Confidence            777888888888878777777888888888886655 67777777888888888886554 6677778888888888887


Q ss_pred             cccccccchhhhc---------CCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecC
Q 017542          121 ASNIKELPSSIEN---------LEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFE  191 (369)
Q Consensus       121 ~~~~~~~~~~~~~---------l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~  191 (369)
                      |...+.+|..+..         +++|++|++++|. ++.+|..+..+++|++|++++|.+..++..+..+++|++|++++
T Consensus       160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~  238 (328)
T 4fcg_A          160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG  238 (328)
T ss_dssp             ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTT
T ss_pred             CCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcC
Confidence            7777766665443         6777777777754 33666666667777777777777776666666777777777777


Q ss_pred             CC-CCCCCccccCCCCCcEEeccCCCCcc-CCCCCCCCCCCCEEEccCCcCC-ccchhhccCCcCcEecccCC
Q 017542          192 CR-GLVLPPLLSGLSSLKKLELGDCEIME-IPPDIGCLSSLESLNLSGNNIE-SLPTSISQLSRLRWLYLVNC  261 (369)
Q Consensus       192 ~~-~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~  261 (369)
                      |. ...+|..+..+++|+.|++++|.+.+ +|..+..+++|++|++++|.+. .+|..++.+++|+.+++..+
T Consensus       239 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred             CcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence            65 44556666667777777777766555 5656666777777777776544 66777777777777766654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.95  E-value=7.7e-27  Score=217.48  Aligned_cols=285  Identities=16%  Similarity=0.139  Sum_probs=230.3

Q ss_pred             CCCCCcCCccCCCCCCCCCccEEecCCCCCccccC-CccCCeeEEecCCccCcccCccCCCCCCCCEEeCcCCccccccc
Q 017542            2 IMAGCESLRCFPQNIHFISSIKIDCYKCVNLREFP-RISGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLS   80 (369)
Q Consensus         2 ~l~~c~~l~~~p~~~~~~~L~~L~l~~~~~l~~~~-~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~   80 (369)
                      ++.++ +++.+|....+++|++|++++|. +..++ ..+.+|++|++++|.++.++  +..+++|++|++++|.... ++
T Consensus        48 ~Ls~n-~l~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~-l~  122 (457)
T 3bz5_A           48 DCHNS-SITDMTGIEKLTGLTKLICTSNN-ITTLDLSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTK-LD  122 (457)
T ss_dssp             ECCSS-CCCCCTTGGGCTTCSEEECCSSC-CSCCCCTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSC-CC
T ss_pred             EccCC-CcccChhhcccCCCCEEEccCCc-CCeEccccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCe-ec
Confidence            34554 56777754589999999999998 77776 12239999999999999886  8899999999999986554 44


Q ss_pred             ccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcc
Q 017542           81 TSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKS  160 (369)
Q Consensus        81 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~  160 (369)
                        ++.+++|++|++++|.... ++  ++.+++|++|++++|...+.+  .+..+++|++|++++|. ++.++  +..+++
T Consensus       123 --~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~-l~~l~--l~~l~~  192 (457)
T 3bz5_A          123 --VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK-ITELD--VSQNKL  192 (457)
T ss_dssp             --CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC-CCCCC--CTTCTT
T ss_pred             --CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc-cceec--cccCCC
Confidence              7889999999999986554 33  788999999999998777666  46789999999999965 44455  788999


Q ss_pred             hhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcC
Q 017542          161 LERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNI  240 (369)
Q Consensus       161 L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l  240 (369)
                      |+.|++++|.+..+  .+..+++|+.|++++|....+|  +..+++|+.|++++|.+.+++  ...+++|+.|++++|.+
T Consensus       193 L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~L  266 (457)
T 3bz5_A          193 LNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDL  266 (457)
T ss_dssp             CCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTCCC
T ss_pred             CCEEECcCCcCCee--ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCCCC
Confidence            99999999999987  3788999999999999988887  788999999999999999865  44566777666666655


Q ss_pred             Cccch---------hhccCCcCcEecccCCcccccCCCCCcccceeccccccccccCCCchhhhHHHhHHHHHhhh
Q 017542          241 ESLPT---------SISQLSRLRWLYLVNCVKLQSLPELPLLLVMLGASDCKRLQFLPELTSCLEELDASILQALS  307 (369)
Q Consensus       241 ~~~~~---------~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~l~~l~~~~~~~l~  307 (369)
                      +.+.-         ..+.+++|+.|++++|..+..+|....+++.+++++|++|+.+....+.++.+++..|++++
T Consensus       267 ~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~l~~l~~L~  342 (457)
T 3bz5_A          267 LEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELDVSHNTKLK  342 (457)
T ss_dssp             SCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCS
T ss_pred             CEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccccccCCcCc
Confidence            43210         14578999999999999888888877889999999999999998877777666544444443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.95  E-value=1.6e-26  Score=223.70  Aligned_cols=139  Identities=19%  Similarity=0.096  Sum_probs=95.7

Q ss_pred             CCccCCCCCCCCCccEEecCCCCCccccCC-ccC---CeeEEecCCccCccc-CccCCCCCCCCEEeCcCCccccccccc
Q 017542            8 SLRCFPQNIHFISSIKIDCYKCVNLREFPR-ISG---NVVELNLMCTPIEEV-PLSIECLPNLETLEMSFCNSLKRLSTS   82 (369)
Q Consensus         8 ~l~~~p~~~~~~~L~~L~l~~~~~l~~~~~-~~~---~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~   82 (369)
                      +++.+|..+ .+++++|++++|. +..++. .+.   +|++|++++|.++.+ |..+..+++|++|++++|......|..
T Consensus        22 ~l~~ip~~~-~~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~   99 (606)
T 3vq2_A           22 KLSKVPDDI-PSSTKNIDLSFNP-LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGS   99 (606)
T ss_dssp             CCSSCCTTS-CTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTS
T ss_pred             CcccCCCCC-CCCcCEEECCCCC-cCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhh
Confidence            466777655 3677888888777 555543 333   777888877777765 345677778888888777655555667


Q ss_pred             ccCCCCCcEEecCCCcCCccCchhhhccCccceeecccccccc-ccchhhhcCCCCCeEeecCCCCC
Q 017542           83 ICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIK-ELPSSIENLEGLKQLKLTGCTKL  148 (369)
Q Consensus        83 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~  148 (369)
                      ++++++|++|++++|......+..++.+++|++|++++|.... .+|..+.++++|++|++++|...
T Consensus       100 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~  166 (606)
T 3vq2_A          100 FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ  166 (606)
T ss_dssp             STTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred             cCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence            7777778888887776555554667777777777777766554 45677777777777777776543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.95  E-value=4.1e-26  Score=218.82  Aligned_cols=316  Identities=18%  Similarity=0.094  Sum_probs=192.3

Q ss_pred             CCccCCCCCCCCCccEEecCCCCCccccC-CccC---CeeEEecCCccCccc-CccCCCCCCCCEEeCcCCccccccccc
Q 017542            8 SLRCFPQNIHFISSIKIDCYKCVNLREFP-RISG---NVVELNLMCTPIEEV-PLSIECLPNLETLEMSFCNSLKRLSTS   82 (369)
Q Consensus         8 ~l~~~p~~~~~~~L~~L~l~~~~~l~~~~-~~~~---~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~   82 (369)
                      +++.+|..+ .+++++|++++|. +..++ ..+.   +|++|++++|.++.+ |..+..+++|++|++++|... .+|..
T Consensus        42 ~L~~ip~~~-~~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~  118 (562)
T 3a79_B           42 NLTHVPKDL-PPRTKALSLSQNS-ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC  118 (562)
T ss_dssp             CCCSCCTTS-CTTCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC
T ss_pred             CCccCCCCC-CCCcCEEECCCCC-ccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc
Confidence            567777765 3778888888887 66655 3333   888888888888866 456788888888888886644 56654


Q ss_pred             ccCCCCCcEEecCCCcCCc-cCchhhhccCccceeeccccccccccchhhhcCCCC--CeEeecCCCC--CCCCCcccCC
Q 017542           83 ICKLKSLRSLDLSYCINLE-SFPEILEKMELLEEINLEEASNIKELPSSIENLEGL--KQLKLTGCTK--LGSLPESLGN  157 (369)
Q Consensus        83 ~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~~~~  157 (369)
                        .+++|++|++++|.... ..|..++.+++|++|++++|.....   .+..+++|  ++|++++|..  ....+..+..
T Consensus       119 --~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~  193 (562)
T 3a79_B          119 --PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQI  193 (562)
T ss_dssp             --CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEE
T ss_pred             --ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccc
Confidence              68888888888876554 2457788888888888887665432   23334444  6666666544  2222222211


Q ss_pred             --------------------------Cc----------------------------------------------------
Q 017542          158 --------------------------LK----------------------------------------------------  159 (369)
Q Consensus       158 --------------------------l~----------------------------------------------------  159 (369)
                                                ++                                                    
T Consensus       194 l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~  273 (562)
T 3a79_B          194 PNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF  273 (562)
T ss_dssp             CCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH
T ss_pred             cCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh
Confidence                                      11                                                    


Q ss_pred             ---chhhhccCcccCC-CCCccc-----------------------------------------------------ccCC
Q 017542          160 ---SLERLHAGLLAIP-QAPSSI-----------------------------------------------------VDLN  182 (369)
Q Consensus       160 ---~L~~L~l~~~~~~-~~~~~l-----------------------------------------------------~~~~  182 (369)
                         +|++|++++|.+. .+|..+                                                     ..++
T Consensus       274 ~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~  353 (562)
T 3a79_B          274 WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPS  353 (562)
T ss_dssp             TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCC
T ss_pred             hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCC
Confidence               3444444444433 333322                                                     4456


Q ss_pred             CCcEEeecCCCCCC-CCccccCCCCCcEEeccCCCCccCC---CCCCCCCCCCEEEccCCcCCc-cchh-hccCCcCcEe
Q 017542          183 KLETLSLFECRGLV-LPPLLSGLSSLKKLELGDCEIMEIP---PDIGCLSSLESLNLSGNNIES-LPTS-ISQLSRLRWL  256 (369)
Q Consensus       183 ~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~l~~-~~~~-~~~~~~L~~L  256 (369)
                      +|++|++++|.... .|..+..+++|+.|++++|.+.+++   ..+..+++|++|++++|.++. +|.. +..+++|++|
T Consensus       354 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L  433 (562)
T 3a79_B          354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL  433 (562)
T ss_dssp             CCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEE
T ss_pred             CceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEE
Confidence            67777777776443 4556666777777777777776543   345666777777777777764 6543 5566777777


Q ss_pred             cccCCcccccCCCCC-cccceeccccccccccCCCc---hhhhHHHhHHHHHhhhccccccccCCCCCcEEEecCccCcc
Q 017542          257 YLVNCVKLQSLPELP-LLLVMLGASDCKRLQFLPEL---TSCLEELDASILQALSNRTGERLSKHMSPVQLIFANCLKLN  332 (369)
Q Consensus       257 ~l~~~~~l~~~~~~~-~~L~~L~l~~c~~L~~l~~~---~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~l~  332 (369)
                      ++++|.--..++... ++|+.|+++++ +++.++..   .++++.|++.++. ++.+....+.....+..+.+.+++--.
T Consensus       434 ~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~~~c  511 (562)
T 3a79_B          434 NLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRLTSLQYIWLHDNPWDC  511 (562)
T ss_dssp             ECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSC-CCCCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred             ECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCC-CCCCCHHHHhcCCCCCEEEecCCCcCC
Confidence            777774323333333 57788888776 55555432   3456666665542 322222224444455667777665443


Q ss_pred             h
Q 017542          333 E  333 (369)
Q Consensus       333 ~  333 (369)
                      +
T Consensus       512 ~  512 (562)
T 3a79_B          512 T  512 (562)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.95  E-value=2.5e-26  Score=215.29  Aligned_cols=260  Identities=22%  Similarity=0.303  Sum_probs=145.3

Q ss_pred             CCccCCCCCCCCCccEEecCCCCCccccCCccC--CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccC
Q 017542            8 SLRCFPQNIHFISSIKIDCYKCVNLREFPRISG--NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICK   85 (369)
Q Consensus         8 ~l~~~p~~~~~~~L~~L~l~~~~~l~~~~~~~~--~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~   85 (369)
                      +++.+|....+++|++|++++|. +..++....  +|++|+++++.++.++. +..+++|++|++++|... .++. +..
T Consensus        57 ~i~~l~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~-~~~~-~~~  132 (466)
T 1o6v_A           57 GIKSIDGVEYLNNLTQINFSNNQ-LTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQIT-DIDP-LKN  132 (466)
T ss_dssp             CCCCCTTGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CCGG-GTT
T ss_pred             CCccCcchhhhcCCCEEECCCCc-cCCchhhhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCC-CChH-HcC
Confidence            35667765578888888888887 666665222  88888888888887766 788888888888887543 3443 777


Q ss_pred             CCCCcEEecCCCcCCccCchhhhccCccc---------------------eeeccccccccccchhhhcCCCCCeEeecC
Q 017542           86 LKSLRSLDLSYCINLESFPEILEKMELLE---------------------EINLEEASNIKELPSSIENLEGLKQLKLTG  144 (369)
Q Consensus        86 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~---------------------~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  144 (369)
                      +++|++|++++|.... ++ .+..+++|+                     +|++++|.. ..++ .+..+++|++|++++
T Consensus       133 l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~-~l~~l~~L~~L~l~~  208 (466)
T 1o6v_A          133 LTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV-SDIS-VLAKLTNLESLIATN  208 (466)
T ss_dssp             CTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCC-CCCG-GGGGCTTCSEEECCS
T ss_pred             CCCCCEEECCCCccCC-Ch-hhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcC-CCCh-hhccCCCCCEEEecC
Confidence            8888888888765332 22 244444444                     444443332 1111 234444444554444


Q ss_pred             CCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCC
Q 017542          145 CTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDI  224 (369)
Q Consensus       145 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  224 (369)
                      |......+  ++.+++|++|++++|.+..+ ..+..+++|+.|++++|.....+. +..+++|+.|++++|.+..++. +
T Consensus       209 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~  283 (466)
T 1o6v_A          209 NQISDITP--LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-L  283 (466)
T ss_dssp             SCCCCCGG--GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-G
T ss_pred             Cccccccc--ccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc-c
Confidence            33222211  33444555555555554443 234445555555555555444433 4455555555555555555433 4


Q ss_pred             CCCCCCCEEEccCCcCCccchhhccCCcCcEecccCCcccccCCC--CCcccceeccccc
Q 017542          225 GCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPE--LPLLLVMLGASDC  282 (369)
Q Consensus       225 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~L~~L~l~~c  282 (369)
                      ..+++|++|++++|.++.++. ++.+++|++|++++| .+++++.  ..++|+.|++++|
T Consensus       284 ~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n  341 (466)
T 1o6v_A          284 AGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFN-NISDISPVSSLTKLQRLFFYNN  341 (466)
T ss_dssp             TTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSS-CCSCCGGGGGCTTCCEEECCSS
T ss_pred             cCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCC-cCCCchhhccCccCCEeECCCC
Confidence            455555666666555555443 455556666666555 3333322  2245555555554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.95  E-value=1.3e-26  Score=220.39  Aligned_cols=94  Identities=13%  Similarity=0.067  Sum_probs=67.4

Q ss_pred             CCCCCcCCccCCC-CC-CCCCccEEecCCCCCcccc-CCccC---CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcc
Q 017542            2 IMAGCESLRCFPQ-NI-HFISSIKIDCYKCVNLREF-PRISG---NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNS   75 (369)
Q Consensus         2 ~l~~c~~l~~~p~-~~-~~~~L~~L~l~~~~~l~~~-~~~~~---~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~   75 (369)
                      +++++ .++.+++ .+ .+++|++|++++|. +..+ |..+.   +|++|++++|.++.+|..  .+++|++|++++|..
T Consensus        27 ~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l  102 (520)
T 2z7x_B           27 NISQN-YISELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAF  102 (520)
T ss_dssp             ECCSS-CCCCCCHHHHTTCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCC
T ss_pred             ECCCC-cccccChhhccccccccEEecCCCc-cCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCcc
Confidence            34454 3555553 33 78888888888887 5554 44444   888888888888888765  788888888888776


Q ss_pred             cc-cccccccCCCCCcEEecCCCcC
Q 017542           76 LK-RLSTSICKLKSLRSLDLSYCIN   99 (369)
Q Consensus        76 ~~-~~~~~~~~~~~L~~L~l~~~~~   99 (369)
                      .+ .+|..++++++|++|++++|..
T Consensus       103 ~~~~~p~~~~~l~~L~~L~L~~n~l  127 (520)
T 2z7x_B          103 DALPICKEFGNMSQLKFLGLSTTHL  127 (520)
T ss_dssp             SSCCCCGGGGGCTTCCEEEEEESSC
T ss_pred             ccccchhhhccCCcceEEEecCccc
Confidence            55 4567778888888888877654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.94  E-value=1.7e-26  Score=223.57  Aligned_cols=114  Identities=19%  Similarity=0.244  Sum_probs=72.9

Q ss_pred             CccCCC-CC-CCCCccEEecCCCCCcccc-CCccC---CeeEEecCCccCccc-CccCCCCCCCCEEeCcCCcccccccc
Q 017542            9 LRCFPQ-NI-HFISSIKIDCYKCVNLREF-PRISG---NVVELNLMCTPIEEV-PLSIECLPNLETLEMSFCNSLKRLST   81 (369)
Q Consensus         9 l~~~p~-~~-~~~~L~~L~l~~~~~l~~~-~~~~~---~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~   81 (369)
                      ++.++. .+ .+++|++|++++|. +..+ |..+.   +|++|++++|.++.+ |..+..+++|++|++++|......+.
T Consensus        44 l~~~~~~~~~~l~~L~~L~Ls~n~-l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~  122 (606)
T 3vq2_A           44 LKILKSYSFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESF  122 (606)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSS
T ss_pred             cCEeChhhccCCccCcEEeCCCCc-ccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcccccccc
Confidence            455544 33 67777777777776 5554 33333   777777777777655 55677777777777777655444445


Q ss_pred             cccCCCCCcEEecCCCcCCc-cCchhhhccCccceeecccccc
Q 017542           82 SICKLKSLRSLDLSYCINLE-SFPEILEKMELLEEINLEEASN  123 (369)
Q Consensus        82 ~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~  123 (369)
                      .++++++|++|++++|.... .+|..++.+++|++|++++|..
T Consensus       123 ~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l  165 (606)
T 3vq2_A          123 PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI  165 (606)
T ss_dssp             CCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCC
T ss_pred             ccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcc
Confidence            56667777777777765543 3566666777777777666543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.94  E-value=2.6e-25  Score=199.01  Aligned_cols=248  Identities=18%  Similarity=0.220  Sum_probs=206.1

Q ss_pred             CCccCCCCCCCCCccEEecCCCCCccccCC-ccC---CeeEEecCCccCccc-CccCCCCCCCCEEeCcCCccccccccc
Q 017542            8 SLRCFPQNIHFISSIKIDCYKCVNLREFPR-ISG---NVVELNLMCTPIEEV-PLSIECLPNLETLEMSFCNSLKRLSTS   82 (369)
Q Consensus         8 ~l~~~p~~~~~~~L~~L~l~~~~~l~~~~~-~~~---~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~   82 (369)
                      +++.+|..+ .+.+++|++++|. +..++. .+.   +|++|++++|.++.+ |..+..+++|++|++++|.. +.+|..
T Consensus        42 ~l~~lp~~~-~~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~l~~~  118 (330)
T 1xku_A           42 GLEKVPKDL-PPDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KELPEK  118 (330)
T ss_dssp             CCCSCCCSC-CTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC-SBCCSS
T ss_pred             CccccCccC-CCCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcC-CccChh
Confidence            466777655 4789999999998 777764 343   999999999999977 67899999999999999764 456654


Q ss_pred             ccCCCCCcEEecCCCcCCccCchhhhccCccceeecccccccc--ccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcc
Q 017542           83 ICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIK--ELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKS  160 (369)
Q Consensus        83 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~  160 (369)
                      +.  ++|++|++++|......+..+..+++|++|++++|....  ..+..+..+++|++|++++|. +..+|..+.  ++
T Consensus       119 ~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~--~~  193 (330)
T 1xku_A          119 MP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLP--PS  193 (330)
T ss_dssp             CC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCC--TT
T ss_pred             hc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCcccc--cc
Confidence            43  799999999987777677789999999999999887643  556778899999999999965 455665443  78


Q ss_pred             hhhhccCcccCCCC-CcccccCCCCcEEeecCCCCCCCCc-cccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCC
Q 017542          161 LERLHAGLLAIPQA-PSSIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGN  238 (369)
Q Consensus       161 L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~  238 (369)
                      |++|++++|.+..+ +..+..+++|++|++++|....++. .+..+++|++|++++|.+..++..+..+++|++|++++|
T Consensus       194 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N  273 (330)
T 1xku_A          194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN  273 (330)
T ss_dssp             CSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSS
T ss_pred             CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCC
Confidence            99999999998866 5678899999999999999766654 788899999999999999999998999999999999999


Q ss_pred             cCCccchh-hc------cCCcCcEecccCCcc
Q 017542          239 NIESLPTS-IS------QLSRLRWLYLVNCVK  263 (369)
Q Consensus       239 ~l~~~~~~-~~------~~~~L~~L~l~~~~~  263 (369)
                      .++.++.. +.      ..+.++.+++++|+.
T Consensus       274 ~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~  305 (330)
T 1xku_A          274 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  305 (330)
T ss_dssp             CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             cCCccChhhcCCcccccccccccceEeecCcc
Confidence            99977643 22      247899999999963

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.94  E-value=6.1e-26  Score=222.59  Aligned_cols=205  Identities=23%  Similarity=0.236  Sum_probs=128.0

Q ss_pred             chhhhccCccceeeccccccccccc-hhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCC---CCCcccc
Q 017542          104 PEILEKMELLEEINLEEASNIKELP-SSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIP---QAPSSIV  179 (369)
Q Consensus       104 ~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~~~~~l~  179 (369)
                      +..+..+++|++|++++|.....++ ..+..+++|++|++++|......+..+..+++|+.|++++|.+.   ..|..+.
T Consensus       398 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~  477 (680)
T 1ziw_A          398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ  477 (680)
T ss_dssp             TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT
T ss_pred             hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc
Confidence            3445555555555555554443333 34555555666666555443333444555666666666666553   3456677


Q ss_pred             cCCCCcEEeecCCCCCCCCc-cccCCCCCcEEeccCCCCccCCC---------CCCCCCCCCEEEccCCcCCccch-hhc
Q 017542          180 DLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIMEIPP---------DIGCLSSLESLNLSGNNIESLPT-SIS  248 (369)
Q Consensus       180 ~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~---------~~~~~~~L~~L~l~~~~l~~~~~-~~~  248 (369)
                      .+++|+.|++++|....++. .+..+++|+.|++++|.+..++.         .+..+++|++|++++|.++.+|. .+.
T Consensus       478 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~  557 (680)
T 1ziw_A          478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK  557 (680)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcc
Confidence            77788888888887666554 46777888888888887765321         25667788888888888887774 467


Q ss_pred             cCCcCcEecccCCcccccCCCC----CcccceeccccccccccCCCc-----hhhhHHHhHHHHHhhhccc
Q 017542          249 QLSRLRWLYLVNCVKLQSLPEL----PLLLVMLGASDCKRLQFLPEL-----TSCLEELDASILQALSNRT  310 (369)
Q Consensus       249 ~~~~L~~L~l~~~~~l~~~~~~----~~~L~~L~l~~c~~L~~l~~~-----~~~l~~l~~~~~~~l~~~~  310 (369)
                      .+++|++|++++| .++.++..    .++|+.|+++++ .++.++..     .++++.+++.+++..++..
T Consensus       558 ~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          558 DLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             cccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCCcccCCc
Confidence            7888888888877 56666642    367788888776 45555432     2445555555555444443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=1.4e-25  Score=208.69  Aligned_cols=241  Identities=24%  Similarity=0.253  Sum_probs=207.6

Q ss_pred             CccEEecCCCCCccccCCccC-CeeEEecCCccCcccC-ccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCC
Q 017542           20 SSIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVP-LSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYC   97 (369)
Q Consensus        20 ~L~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~   97 (369)
                      ..+.++.++.. +..+|..++ +++.|++++|.++.++ ..+..+++|++|++++|......+..+.++++|++|++++|
T Consensus        44 ~~~~v~c~~~~-l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n  122 (440)
T 3zyj_A           44 QFSKVICVRKN-LREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN  122 (440)
T ss_dssp             TSCEEECCSCC-CSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred             CCCEEEeCCCC-cCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence            35678888877 899998776 9999999999999776 57899999999999998776666677899999999999998


Q ss_pred             cCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCc-ccCCCcchhhhccCcccCCCCCc
Q 017542           98 INLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPE-SLGNLKSLERLHAGLLAIPQAPS  176 (369)
Q Consensus        98 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~  176 (369)
                      ......+..+..+++|++|++++|......+..+..+++|++|++++|+.+..++. .+..+++|++|++++|.+..+| 
T Consensus       123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-  201 (440)
T 3zyj_A          123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-  201 (440)
T ss_dssp             CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-
T ss_pred             cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-
Confidence            76655556789999999999998876655566888999999999999887776654 5788999999999999999887 


Q ss_pred             ccccCCCCcEEeecCCCCCCC-CccccCCCCCcEEeccCCCCccC-CCCCCCCCCCCEEEccCCcCCccch-hhccCCcC
Q 017542          177 SIVDLNKLETLSLFECRGLVL-PPLLSGLSSLKKLELGDCEIMEI-PPDIGCLSSLESLNLSGNNIESLPT-SISQLSRL  253 (369)
Q Consensus       177 ~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L  253 (369)
                      .+..+++|+.|++++|....+ +..+..+++|+.|++++|.+..+ +..+..+++|++|+|++|.++.++. .+..+++|
T Consensus       202 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  281 (440)
T 3zyj_A          202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL  281 (440)
T ss_dssp             CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred             ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence            478899999999999997666 56888999999999999999984 5567889999999999999997774 46889999


Q ss_pred             cEecccCCc
Q 017542          254 RWLYLVNCV  262 (369)
Q Consensus       254 ~~L~l~~~~  262 (369)
                      +.|++++|+
T Consensus       282 ~~L~L~~Np  290 (440)
T 3zyj_A          282 ERIHLHHNP  290 (440)
T ss_dssp             CEEECCSSC
T ss_pred             CEEEcCCCC
Confidence            999999986

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=1.8e-25  Score=208.60  Aligned_cols=240  Identities=27%  Similarity=0.258  Sum_probs=206.8

Q ss_pred             ccEEecCCCCCccccCCccC-CeeEEecCCccCccc-CccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCc
Q 017542           21 SIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEV-PLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCI   98 (369)
Q Consensus        21 L~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~   98 (369)
                      ...++.++.. +..+|..++ ++++|++++|.++.+ +..+..+++|++|++++|......+..+.++++|++|++++|.
T Consensus        56 ~~~v~c~~~~-l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~  134 (452)
T 3zyi_A           56 FSKVVCTRRG-LSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW  134 (452)
T ss_dssp             SCEEECCSSC-CSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CcEEEECCCC-cCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence            5678888776 889998666 999999999999976 4578999999999999987766666788999999999999987


Q ss_pred             CCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCc-ccCCCcchhhhccCcccCCCCCcc
Q 017542           99 NLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPE-SLGNLKSLERLHAGLLAIPQAPSS  177 (369)
Q Consensus        99 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~  177 (369)
                      .....+..+..+++|++|++++|......+..+..+++|++|++++|+.++.++. .+..+++|++|++++|.+..++ .
T Consensus       135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~  213 (452)
T 3zyi_A          135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-N  213 (452)
T ss_dssp             CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-C
T ss_pred             CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-c
Confidence            6666667789999999999998876655556788999999999999888777664 5788999999999999999886 5


Q ss_pred             cccCCCCcEEeecCCCCCCC-CccccCCCCCcEEeccCCCCccC-CCCCCCCCCCCEEEccCCcCCccch-hhccCCcCc
Q 017542          178 IVDLNKLETLSLFECRGLVL-PPLLSGLSSLKKLELGDCEIMEI-PPDIGCLSSLESLNLSGNNIESLPT-SISQLSRLR  254 (369)
Q Consensus       178 l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~  254 (369)
                      +..+++|+.|++++|....+ +..+..+++|+.|++++|.+..+ +..+..+++|++|++++|.++.++. .+..+++|+
T Consensus       214 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  293 (452)
T 3zyi_A          214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV  293 (452)
T ss_dssp             CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred             ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC
Confidence            78899999999999997665 56788999999999999999984 5567889999999999999998774 467899999


Q ss_pred             EecccCCc
Q 017542          255 WLYLVNCV  262 (369)
Q Consensus       255 ~L~l~~~~  262 (369)
                      +|++++|+
T Consensus       294 ~L~L~~Np  301 (452)
T 3zyi_A          294 ELHLHHNP  301 (452)
T ss_dssp             EEECCSSC
T ss_pred             EEEccCCC
Confidence            99999985

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=4.7e-26  Score=203.33  Aligned_cols=210  Identities=28%  Similarity=0.455  Sum_probs=187.1

Q ss_pred             CCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEe
Q 017542           62 LPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLK  141 (369)
Q Consensus        62 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  141 (369)
                      .+++++|++++|... .+|..+.++++|++|++++|... .+|..++.+++|++|++++|... .+|..+..+++|++|+
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            478999999997654 78888888999999999998765 88888999999999999987655 7888999999999999


Q ss_pred             ecCCCCCCCCCcccCC---------CcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEec
Q 017542          142 LTGCTKLGSLPESLGN---------LKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLEL  212 (369)
Q Consensus       142 l~~~~~~~~~~~~~~~---------l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l  212 (369)
                      +++|+..+.+|..+..         +++|++|++++|.+..+|..+..+++|++|++++|....+|..+..+++|++|++
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~L  236 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL  236 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEEC
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEEC
Confidence            9999988888876654         8999999999999999999999999999999999998889888999999999999


Q ss_pred             cCCCCcc-CCCCCCCCCCCCEEEccCCcCC-ccchhhccCCcCcEecccCCcccccCCCCCccc
Q 017542          213 GDCEIME-IPPDIGCLSSLESLNLSGNNIE-SLPTSISQLSRLRWLYLVNCVKLQSLPELPLLL  274 (369)
Q Consensus       213 ~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L  274 (369)
                      ++|.+.+ ++..+..+++|++|++++|.+. .+|..++.+++|++|++++|...+.+|..+..+
T Consensus       237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L  300 (328)
T 4fcg_A          237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL  300 (328)
T ss_dssp             TTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS
T ss_pred             cCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc
Confidence            9998877 7778899999999999998665 888889999999999999998888888755433

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.94  E-value=3e-25  Score=198.74  Aligned_cols=267  Identities=18%  Similarity=0.196  Sum_probs=210.3

Q ss_pred             CCccCCCCCCCCCccEEecCCCCCccccC-CccC---CeeEEecCCccCccc-CccCCCCCCCCEEeCcCCccccccccc
Q 017542            8 SLRCFPQNIHFISSIKIDCYKCVNLREFP-RISG---NVVELNLMCTPIEEV-PLSIECLPNLETLEMSFCNSLKRLSTS   82 (369)
Q Consensus         8 ~l~~~p~~~~~~~L~~L~l~~~~~l~~~~-~~~~---~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~   82 (369)
                      +++.+|..+ .+++++|++++|. +..++ ..+.   +|++|++++|.++.+ +..+..+++|++|++++|... .+|..
T Consensus        44 ~l~~ip~~~-~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~  120 (332)
T 2ft3_A           44 GLKAVPKEI-SPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPN  120 (332)
T ss_dssp             CCSSCCSCC-CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSS
T ss_pred             CccccCCCC-CCCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcc
Confidence            567788766 5789999999998 66664 3444   999999999999977 567899999999999997654 66654


Q ss_pred             ccCCCCCcEEecCCCcCCccCchhhhccCccceeecccccccc--ccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcc
Q 017542           83 ICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIK--ELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKS  160 (369)
Q Consensus        83 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~  160 (369)
                      +.  ++|++|++++|......+..+..+++|++|++++|....  ..+..+..+ +|++|++++|. +..+|..+.  ++
T Consensus       121 ~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~--~~  194 (332)
T 2ft3_A          121 LP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLP--ET  194 (332)
T ss_dssp             CC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSC--SS
T ss_pred             cc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCcccc--CC
Confidence            44  899999999987766666678999999999999887643  455666667 99999999965 455665443  78


Q ss_pred             hhhhccCcccCCCCC-cccccCCCCcEEeecCCCCCCCCc-cccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCC
Q 017542          161 LERLHAGLLAIPQAP-SSIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGN  238 (369)
Q Consensus       161 L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~  238 (369)
                      |++|++++|.+..++ ..+..+++|+.|++++|....++. .+..+++|+.|++++|.+..+|..+..+++|++|++++|
T Consensus       195 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N  274 (332)
T 2ft3_A          195 LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTN  274 (332)
T ss_dssp             CSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSS
T ss_pred             CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCC
Confidence            999999999998775 678899999999999999776664 788899999999999999999998999999999999999


Q ss_pred             cCCccchh-hcc------CCcCcEecccCCcccc-cCC-C---CCcccceecccccc
Q 017542          239 NIESLPTS-ISQ------LSRLRWLYLVNCVKLQ-SLP-E---LPLLLVMLGASDCK  283 (369)
Q Consensus       239 ~l~~~~~~-~~~------~~~L~~L~l~~~~~l~-~~~-~---~~~~L~~L~l~~c~  283 (369)
                      .++.++.. +..      .++|+.|++++|+... .++ .   ..++|+.+++.+++
T Consensus       275 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          275 NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             CCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            99977632 322      4779999999996321 222 1   22455666665543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.94  E-value=1.4e-25  Score=215.19  Aligned_cols=95  Identities=14%  Similarity=0.124  Sum_probs=71.8

Q ss_pred             CCCCCcCCccCCC-CC-CCCCccEEecCCCCCcccc-CCccC---CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcc
Q 017542            2 IMAGCESLRCFPQ-NI-HFISSIKIDCYKCVNLREF-PRISG---NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNS   75 (369)
Q Consensus         2 ~l~~c~~l~~~p~-~~-~~~~L~~L~l~~~~~l~~~-~~~~~---~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~   75 (369)
                      ++.++ .++.+|+ .+ .+++|++|++++|. +..+ |..+.   +|++|++++|.++.+|..  .+++|++|++++|..
T Consensus        58 ~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l  133 (562)
T 3a79_B           58 SLSQN-SISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDF  133 (562)
T ss_dssp             ECCSS-CCCCCCGGGTTTCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCC
T ss_pred             ECCCC-CccccChhhhccCCCccEEECCCCC-CCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCc
Confidence            34554 3566664 44 88999999999998 6665 44444   899999999999988875  788999999999876


Q ss_pred             cc-cccccccCCCCCcEEecCCCcCC
Q 017542           76 LK-RLSTSICKLKSLRSLDLSYCINL  100 (369)
Q Consensus        76 ~~-~~~~~~~~~~~L~~L~l~~~~~~  100 (369)
                      .+ ..|..++++++|++|++++|...
T Consensus       134 ~~l~~p~~~~~l~~L~~L~L~~n~l~  159 (562)
T 3a79_B          134 DVLPVCKEFGNLTKLTFLGLSAAKFR  159 (562)
T ss_dssp             SBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred             cccCchHhhcccCcccEEecCCCccc
Confidence            55 34567888889999998887543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.94  E-value=6.6e-26  Score=207.61  Aligned_cols=248  Identities=19%  Similarity=0.169  Sum_probs=187.4

Q ss_pred             CccCCCCC--CCCCccEEecCCCCCccccCC-ccC---CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcccccccc
Q 017542            9 LRCFPQNI--HFISSIKIDCYKCVNLREFPR-ISG---NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLST   81 (369)
Q Consensus         9 l~~~p~~~--~~~~L~~L~l~~~~~l~~~~~-~~~---~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~   81 (369)
                      ++.+|...  .+++|++|++++|. +..++. .+.   +|++|++++|.++.++. .+..+++|++|++++|... .+|.
T Consensus        57 l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~  134 (390)
T 3o6n_A           57 MRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPR  134 (390)
T ss_dssp             ESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred             hhhCChhHhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCH
Confidence            55667653  67888888888887 565543 333   78888888888876654 4677888888888886544 4443


Q ss_pred             -cccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhh----------------------------
Q 017542           82 -SICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIE----------------------------  132 (369)
Q Consensus        82 -~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~----------------------------  132 (369)
                       .+..+++|++|++++|......+..+..+++|++|++++|.........+.                            
T Consensus       135 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~  214 (390)
T 3o6n_A          135 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASH  214 (390)
T ss_dssp             TTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCS
T ss_pred             HHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCC
Confidence             357788888888888766665666677788888888887654332111111                            


Q ss_pred             ---------cCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCC-CcccccCCCCcEEeecCCCCCCCCcccc
Q 017542          133 ---------NLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQA-PSSIVDLNKLETLSLFECRGLVLPPLLS  202 (369)
Q Consensus       133 ---------~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~  202 (369)
                               ..++|+.|++++|... .. ..+..+++|++|++++|.+..+ +..+..+++|++|++++|....++..+.
T Consensus       215 n~l~~~~~~~~~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  292 (390)
T 3o6n_A          215 NSINVVRGPVNVELTILKLQHNNLT-DT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQ  292 (390)
T ss_dssp             SCCCEEECCCCSSCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSS
T ss_pred             CeeeeccccccccccEEECCCCCCc-cc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccC
Confidence                     1124555555554332 22 3577889999999999999865 6788899999999999999888888788


Q ss_pred             CCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccchhhccCCcCcEecccCCc
Q 017542          203 GLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCV  262 (369)
Q Consensus       203 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~  262 (369)
                      .+++|+.|++++|.+..++..+..+++|++|++++|.++.++  +..+++|++|++++|+
T Consensus       293 ~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          293 PIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHND  350 (390)
T ss_dssp             CCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSC
T ss_pred             CCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCCC
Confidence            899999999999999998877888899999999999999886  7788999999999995

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.94  E-value=5.3e-26  Score=218.52  Aligned_cols=148  Identities=20%  Similarity=0.208  Sum_probs=78.5

Q ss_pred             CCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCC--CCCCCCCCCCEEEccCCcCC-ccchhhccCCcCcEec
Q 017542          181 LNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIP--PDIGCLSSLESLNLSGNNIE-SLPTSISQLSRLRWLY  257 (369)
Q Consensus       181 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~  257 (369)
                      +++|++|++++|....++..+..+++|+.|++++|.+...+  ..+..+++|++|++++|.++ ..+..+..+++|++|+
T Consensus       372 ~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  451 (570)
T 2z63_A          372 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK  451 (570)
T ss_dssp             CSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred             cCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEE
Confidence            33444444444433333333445555555555555555432  23556667777777777666 3445566677777777


Q ss_pred             ccCCccc-ccCCC---CCcccceeccccccccccC-CC---chhhhHHHhHHHHHhhhccccccccCCCCCcEEEecCcc
Q 017542          258 LVNCVKL-QSLPE---LPLLLVMLGASDCKRLQFL-PE---LTSCLEELDASILQALSNRTGERLSKHMSPVQLIFANCL  329 (369)
Q Consensus       258 l~~~~~l-~~~~~---~~~~L~~L~l~~c~~L~~l-~~---~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~  329 (369)
                      +++|... ..+|.   ..++|+.|++++|. +..+ +.   ..++++.|++.++ .++......+.....+..+.+.+++
T Consensus       452 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             CTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CcCCcCccccchhhhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence            7777422 13343   23567777777763 2222 21   2356666766655 3333333334445556677777654


Q ss_pred             C
Q 017542          330 K  330 (369)
Q Consensus       330 ~  330 (369)
                      -
T Consensus       530 ~  530 (570)
T 2z63_A          530 W  530 (570)
T ss_dssp             B
T ss_pred             c
Confidence            3

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.94  E-value=4.9e-26  Score=218.75  Aligned_cols=135  Identities=20%  Similarity=0.153  Sum_probs=59.5

Q ss_pred             CccCCCCCCCCCccEEecCCCCCccccCC-ccC---CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcccccccccc
Q 017542            9 LRCFPQNIHFISSIKIDCYKCVNLREFPR-ISG---NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSI   83 (369)
Q Consensus         9 l~~~p~~~~~~~L~~L~l~~~~~l~~~~~-~~~---~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~   83 (369)
                      ++.+|..+ .+++++|++++|. +..++. .+.   +|++|++++|.++.++. .+..+++|++|++++|......+..+
T Consensus        19 l~~ip~~l-~~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~   96 (570)
T 2z63_A           19 FYKIPDNL-PFSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF   96 (570)
T ss_dssp             CSSCCSSS-CSSCCEEECCSCC-CCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred             ccccCCCc-cccccEEEccCCc-cCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhh
Confidence            44455433 2345555555555 333331 121   55555555555554432 34455555555555544333333344


Q ss_pred             cCCCCCcEEecCCCcCCccCchhhhccCccceeecccccccc-ccchhhhcCCCCCeEeecCC
Q 017542           84 CKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIK-ELPSSIENLEGLKQLKLTGC  145 (369)
Q Consensus        84 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~  145 (369)
                      .++++|++|++++|......+..++.+++|++|++++|.... .+|..+.++++|++|++++|
T Consensus        97 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n  159 (570)
T 2z63_A           97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN  159 (570)
T ss_dssp             TTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS
T ss_pred             cCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC
Confidence            444555555554443222222234444444444444443332 23444444444444444443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=1.2e-25  Score=203.20  Aligned_cols=281  Identities=18%  Similarity=0.148  Sum_probs=224.6

Q ss_pred             CCCCCCccEEecCCCCCccccCCccC-CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcccccccccccCCCCCcEE
Q 017542           15 NIHFISSIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSL   92 (369)
Q Consensus        15 ~~~~~~L~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L   92 (369)
                      ...|+.....+++++. +..+|..+. +|++|+++++.++.++. .+..+++|++|++++|...+..+..+.++++|++|
T Consensus        27 ~~~C~~~~~c~~~~~~-l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           27 SLSCDRNGICKGSSGS-LNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             CCEECTTSEEECCSTT-CSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCCCeEeeCCCCC-cccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            3366777778998888 899998665 99999999999998876 68999999999999987666656778899999999


Q ss_pred             ecCCCcCCccCchhhhccCccceeeccccccccccch--hhhcCCCCCeEeecCCCCCCCC-CcccCCCcchhhhccCcc
Q 017542           93 DLSYCINLESFPEILEKMELLEEINLEEASNIKELPS--SIENLEGLKQLKLTGCTKLGSL-PESLGNLKSLERLHAGLL  169 (369)
Q Consensus        93 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~  169 (369)
                      ++++|......+..+..+++|++|++++|... .++.  .+..+++|++|++++|+..+.+ +..+..+++|++|++++|
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  184 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS  184 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence            99998766555555899999999999987655 4444  6888999999999998655544 456889999999999999


Q ss_pred             cCCCC-CcccccCCCCcEEeecCCCCCCCCcc-ccCCCCCcEEeccCCCCccCCCC----CCCCCCCCEEEccCCcCC--
Q 017542          170 AIPQA-PSSIVDLNKLETLSLFECRGLVLPPL-LSGLSSLKKLELGDCEIMEIPPD----IGCLSSLESLNLSGNNIE--  241 (369)
Q Consensus       170 ~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~L~~L~l~~~~l~--  241 (369)
                      .+... +..+..+++|++|++++|....++.. +..+++|+.|++++|.+.+.+..    ......++.++++++.++  
T Consensus       185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~  264 (353)
T 2z80_A          185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE  264 (353)
T ss_dssp             TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH
T ss_pred             CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCc
Confidence            98855 67888999999999999997777653 44578999999999999874321    234667888999888776  


Q ss_pred             ---ccchhhccCCcCcEecccCCcccccCCCC----CcccceeccccccccccCCCchhhhHHHhHHH
Q 017542          242 ---SLPTSISQLSRLRWLYLVNCVKLQSLPEL----PLLLVMLGASDCKRLQFLPELTSCLEELDASI  302 (369)
Q Consensus       242 ---~~~~~~~~~~~L~~L~l~~~~~l~~~~~~----~~~L~~L~l~~c~~L~~l~~~~~~l~~l~~~~  302 (369)
                         .+|..+..+++|++|++++| .++.+|..    .++|++|++++++    +...++.++.+..+.
T Consensus       265 ~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~----~~~~~~~l~~l~~~~  327 (353)
T 2z80_A          265 SLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP----WDCSCPRIDYLSRWL  327 (353)
T ss_dssp             HHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC----BCCCHHHHHHHHHHH
T ss_pred             chhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC----ccCcCCCcHHHHHHH
Confidence               46778899999999999999 67777752    3678899998875    344555666666553

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.94  E-value=1e-25  Score=225.65  Aligned_cols=166  Identities=17%  Similarity=0.146  Sum_probs=117.9

Q ss_pred             CCCCcCCccC-CCCC-CCCCccEEecCCCCCcccc-CCccC---CeeEEecCCccCccc-CccCCCCCCCCEEeCcCCcc
Q 017542            3 MAGCESLRCF-PQNI-HFISSIKIDCYKCVNLREF-PRISG---NVVELNLMCTPIEEV-PLSIECLPNLETLEMSFCNS   75 (369)
Q Consensus         3 l~~c~~l~~~-p~~~-~~~~L~~L~l~~~~~l~~~-~~~~~---~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~   75 (369)
                      ++++ .++.+ |..+ .+++|++|++++|.....+ |..+.   +|++|++++|.+..+ |..+..+++|++|++++|..
T Consensus        31 Ls~N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l  109 (844)
T 3j0a_A           31 LSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGL  109 (844)
T ss_dssp             EESC-CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCC
T ss_pred             CCCC-cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCC
Confidence            4444 34554 4455 8899999999999666676 44444   899999999999866 66889999999999999877


Q ss_pred             ccccccc--ccCCCCCcEEecCCCcCCccCc-hhhhccCccceeeccccccccccchhhhcC--CCCCeEeecCCCCCCC
Q 017542           76 LKRLSTS--ICKLKSLRSLDLSYCINLESFP-EILEKMELLEEINLEEASNIKELPSSIENL--EGLKQLKLTGCTKLGS  150 (369)
Q Consensus        76 ~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~  150 (369)
                      .+.++..  +..+++|++|++++|......+ ..++++++|++|++++|......+..+..+  ++|+.|++++|.....
T Consensus       110 ~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~  189 (844)
T 3j0a_A          110 SDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSR  189 (844)
T ss_dssp             SSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCC
T ss_pred             CcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccc
Confidence            6655544  7889999999999987665533 578899999999999887666555555555  6666666666555444


Q ss_pred             CCcccCCCcc------hhhhccCcc
Q 017542          151 LPESLGNLKS------LERLHAGLL  169 (369)
Q Consensus       151 ~~~~~~~l~~------L~~L~l~~~  169 (369)
                      .+..+..+.+      |+.|++++|
T Consensus       190 ~~~~~~~~~~~~~~~~L~~L~Ls~n  214 (844)
T 3j0a_A          190 VSVDWGKCMNPFRNMVLEILDVSGN  214 (844)
T ss_dssp             CCCCCCSSSCTTTTCCBSEEBCSSC
T ss_pred             cccchhhcCCccccCceeEEecCCC
Confidence            4433333332      555555554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=1.8e-25  Score=197.97  Aligned_cols=239  Identities=23%  Similarity=0.278  Sum_probs=186.2

Q ss_pred             cEEecCCCCCccccCCccC-CeeEEecCCccCcccCcc-CCCCCCCCEEeCcCCcccc--cccccccCCCCCcEEecCCC
Q 017542           22 IKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPLS-IECLPNLETLEMSFCNSLK--RLSTSICKLKSLRSLDLSYC   97 (369)
Q Consensus        22 ~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~   97 (369)
                      +.++++++. +..+|..+. +|++|+++++.++.++.. +..+++|++|++++|....  ..+..+..+++|++|++++|
T Consensus        10 ~~l~c~~~~-l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n   88 (306)
T 2z66_A           10 TEIRCNSKG-LTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN   88 (306)
T ss_dssp             TEEECCSSC-CSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred             CEEEcCCCC-cccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence            467888777 888887665 999999999999888764 6889999999999876543  22455667899999999997


Q ss_pred             cCCccCchhhhccCccceeeccccccccccc-hhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCC--C
Q 017542           98 INLESFPEILEKMELLEEINLEEASNIKELP-SSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQ--A  174 (369)
Q Consensus        98 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~  174 (369)
                      .. ..++..+..+++|++|++++|......+ ..+..+++|++|++++|......+..+..+++|++|++++|.+..  .
T Consensus        89 ~i-~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  167 (306)
T 2z66_A           89 GV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL  167 (306)
T ss_dssp             SE-EEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred             cc-ccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc
Confidence            54 3566678889999999999776554333 467888899999999877665666667888888889988888774  6


Q ss_pred             CcccccCCCCcEEeecCCCCCCC-CccccCCCCCcEEeccCCCCccCCC-CCCCCCCCCEEEccCCcCCc-cchhhccCC
Q 017542          175 PSSIVDLNKLETLSLFECRGLVL-PPLLSGLSSLKKLELGDCEIMEIPP-DIGCLSSLESLNLSGNNIES-LPTSISQLS  251 (369)
Q Consensus       175 ~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~  251 (369)
                      |..+..+++|++|++++|....+ +..+..+++|+.|++++|.+.+++. .+..+++|++|++++|.++. .+..+..++
T Consensus       168 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~  247 (306)
T 2z66_A          168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP  247 (306)
T ss_dssp             CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCC
T ss_pred             hhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhh
Confidence            77788888888898888886655 5567788888888888888887554 46778888888888888874 445666774


Q ss_pred             -cCcEecccCCc
Q 017542          252 -RLRWLYLVNCV  262 (369)
Q Consensus       252 -~L~~L~l~~~~  262 (369)
                       +|++|++++|+
T Consensus       248 ~~L~~L~L~~N~  259 (306)
T 2z66_A          248 SSLAFLNLTQND  259 (306)
T ss_dssp             TTCCEEECTTCC
T ss_pred             ccCCEEEccCCC
Confidence             88888888884

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.93  E-value=7.5e-25  Score=205.22  Aligned_cols=266  Identities=24%  Similarity=0.326  Sum_probs=191.2

Q ss_pred             CCCCcCCccCCCCCCCCCccEEecCCCCCccccCCcc--CCeeEEecCCccCcccCccCCCCCCCCEEeCcCCccccccc
Q 017542            3 MAGCESLRCFPQNIHFISSIKIDCYKCVNLREFPRIS--GNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLS   80 (369)
Q Consensus         3 l~~c~~l~~~p~~~~~~~L~~L~l~~~~~l~~~~~~~--~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~   80 (369)
                      +.+| .++.+|+...+++|++|++++|. +..++...  .+|++|+++++.++.++. +..+++|++|++++|.... ++
T Consensus        75 Ls~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~  150 (466)
T 1o6v_A           75 FSNN-QLTDITPLKNLTKLVDILMNNNQ-IADITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISD-IS  150 (466)
T ss_dssp             CCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECC-CG
T ss_pred             CCCC-ccCCchhhhccccCCEEECCCCc-cccChhhcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCC-Ch
Confidence            4444 35666664478888888888887 66655422  288888888888877765 7778888888888765332 11


Q ss_pred             --------------------ccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeE
Q 017542           81 --------------------TSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQL  140 (369)
Q Consensus        81 --------------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  140 (369)
                                          ..+..+++|++|++++|... .+ ..+..+++|++|++++|......+  +..+++|++|
T Consensus       151 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L  226 (466)
T 1o6v_A          151 ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS-DI-SVLAKLTNLESLIATNNQISDITP--LGILTNLDEL  226 (466)
T ss_dssp             GGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEE
T ss_pred             hhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCC-CC-hhhccCCCCCEEEecCCccccccc--ccccCCCCEE
Confidence                                12566788888888887543 33 347888999999999776544333  6678889999


Q ss_pred             eecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccC
Q 017542          141 KLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEI  220 (369)
Q Consensus       141 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  220 (369)
                      ++++|.. ..++ .+..+++|++|++++|.+...+. +..+++|+.|++++|....++. +..+++|+.|++++|.+.++
T Consensus       227 ~l~~n~l-~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~  302 (466)
T 1o6v_A          227 SLNGNQL-KDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDI  302 (466)
T ss_dssp             ECCSSCC-CCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCC
T ss_pred             ECCCCCc-ccch-hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCc
Confidence            9988654 3343 46778888888888888877654 7778888888888888766665 67788888888888888775


Q ss_pred             CCCCCCCCCCCEEEccCCcCCccchhhccCCcCcEecccCCcccccCCC--CCcccceecccccc
Q 017542          221 PPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPE--LPLLLVMLGASDCK  283 (369)
Q Consensus       221 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~L~~L~l~~c~  283 (369)
                      +. +..+++|++|++++|.++.++. +..+++|++|++++| .++.++.  ..++|+.|++++|+
T Consensus       303 ~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~  364 (466)
T 1o6v_A          303 SP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNN-KVSDVSSLANLTNINWLSAGHNQ  364 (466)
T ss_dssp             GG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC
T ss_pred             hh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCC-ccCCchhhccCCCCCEEeCCCCc
Confidence            54 6677888888888888876654 677888888888887 5555543  23667777777664

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=2e-25  Score=195.54  Aligned_cols=219  Identities=22%  Similarity=0.227  Sum_probs=124.2

Q ss_pred             cEEecCCCCCccccCCccC-CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcC
Q 017542           22 IKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCIN   99 (369)
Q Consensus        22 ~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   99 (369)
                      +.++++++. +..+|..+. +|++|+++++.++.++. .+..+++|++|++++|......+..+..+++|++|++++|..
T Consensus        14 ~~~~c~~~~-l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~   92 (285)
T 1ozn_A           14 VTTSCPQQG-LQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (285)
T ss_dssp             CEEECCSSC-CSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             eEEEcCcCC-cccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence            567777666 777776444 77888887777776653 467777788888877655544456677777777777777652


Q ss_pred             Ccc-CchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCc-c
Q 017542          100 LES-FPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPS-S  177 (369)
Q Consensus       100 ~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~  177 (369)
                      ... .+..+..+++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++++|.+..++. .
T Consensus        93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  172 (285)
T 1ozn_A           93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA  172 (285)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHH
Confidence            333 35666677777777777665544445556666666666666654333323334455555555555555444332 2


Q ss_pred             cccCCCCcEEeecCCCCCCC-CccccCCCCCcEEeccCCCCccCCC-CCCCCCCCCEEEccCCcCC
Q 017542          178 IVDLNKLETLSLFECRGLVL-PPLLSGLSSLKKLELGDCEIMEIPP-DIGCLSSLESLNLSGNNIE  241 (369)
Q Consensus       178 l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~  241 (369)
                      +..+++|+.|++++|....+ +..+..+++|+.|++++|.+.+++. .+..+++|++|++++|.+.
T Consensus       173 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            44444455555544443322 3334444444444444444444332 1334444444444444433

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.93  E-value=7.9e-25  Score=219.23  Aligned_cols=272  Identities=18%  Similarity=0.162  Sum_probs=182.8

Q ss_pred             cCCccCCCCCCCCCccEEecCCCCCcccc-CCccC---CeeEEecCCcc-Cccc-CccCCCCCCCCEEeCcCCccccccc
Q 017542            7 ESLRCFPQNIHFISSIKIDCYKCVNLREF-PRISG---NVVELNLMCTP-IEEV-PLSIECLPNLETLEMSFCNSLKRLS   80 (369)
Q Consensus         7 ~~l~~~p~~~~~~~L~~L~l~~~~~l~~~-~~~~~---~L~~L~l~~~~-~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~   80 (369)
                      .+++.+|.  -.+++++|++++|. +..+ +..+.   +|++|+++++. +..+ +..+.++++|++|++++|......|
T Consensus        14 ~~L~~vP~--lp~~l~~LdLs~N~-i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p   90 (844)
T 3j0a_A           14 CNLTQVPQ--VLNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP   90 (844)
T ss_dssp             CCSSCCCS--SCTTCCEEEEESCC-CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT
T ss_pred             CCCCCCCC--CCCCcCEEECCCCc-CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH
Confidence            46788888  46789999999998 5555 44444   89999998774 4466 5678999999999999988777778


Q ss_pred             ccccCCCCCcEEecCCCcCCccCchh--hhccCccceeeccccccccccc-hhhhcCCCCCeEeecCCCCCCCCCcccCC
Q 017542           81 TSICKLKSLRSLDLSYCINLESFPEI--LEKMELLEEINLEEASNIKELP-SSIENLEGLKQLKLTGCTKLGSLPESLGN  157 (369)
Q Consensus        81 ~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  157 (369)
                      ..+.++++|++|++++|......+..  +..+++|++|++++|...+..+ ..+.++++|++|++++|......+..+..
T Consensus        91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~  170 (844)
T 3j0a_A           91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP  170 (844)
T ss_dssp             TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred             hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence            88999999999999998776655544  8899999999999887666433 57889999999999997766666666666


Q ss_pred             C--cchhhhccCcccCCC-CCcccccCCC------CcEEeecCC------------------------------------
Q 017542          158 L--KSLERLHAGLLAIPQ-APSSIVDLNK------LETLSLFEC------------------------------------  192 (369)
Q Consensus       158 l--~~L~~L~l~~~~~~~-~~~~l~~~~~------L~~L~l~~~------------------------------------  192 (369)
                      +  ++|+.|++++|.+.. .+..+..+.+      |+.|++++|                                    
T Consensus       171 l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~  250 (844)
T 3j0a_A          171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH  250 (844)
T ss_dssp             HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCS
T ss_pred             ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccc
Confidence            6  788999998887653 2222222222      444444444                                    


Q ss_pred             --------------------------CCCCC-CccccCCCCCcEEeccCCCCccC-CCCCCCCCCCCEEEccCCcCCcc-
Q 017542          193 --------------------------RGLVL-PPLLSGLSSLKKLELGDCEIMEI-PPDIGCLSSLESLNLSGNNIESL-  243 (369)
Q Consensus       193 --------------------------~~~~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~-  243 (369)
                                                ....+ +..+..+++|+.|++++|.+..+ +..+..+++|++|++++|.++.+ 
T Consensus       251 ~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  330 (844)
T 3j0a_A          251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY  330 (844)
T ss_dssp             SSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC
T ss_pred             ccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC
Confidence                                      32222 23344555566666666655552 33455556666666666665533 


Q ss_pred             chhhccCCcCcEecccCCcccccCCC----CCcccceeccccc
Q 017542          244 PTSISQLSRLRWLYLVNCVKLQSLPE----LPLLLVMLGASDC  282 (369)
Q Consensus       244 ~~~~~~~~~L~~L~l~~~~~l~~~~~----~~~~L~~L~l~~c  282 (369)
                      +..+..+++|++|++++| .++.++.    ..++|+.|+++++
T Consensus       331 ~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N  372 (844)
T 3j0a_A          331 SSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDN  372 (844)
T ss_dssp             SCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETC
T ss_pred             HHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCC
Confidence            345555666666666655 3444332    1245555555544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.93  E-value=1.2e-24  Score=202.60  Aligned_cols=266  Identities=26%  Similarity=0.244  Sum_probs=145.5

Q ss_pred             CccCCCCCCCCCccEEecCCCCCccccCCccCCeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCC
Q 017542            9 LRCFPQNIHFISSIKIDCYKCVNLREFPRISGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKS   88 (369)
Q Consensus         9 l~~~p~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~   88 (369)
                      ++.+|..  .++|++|++++|. +..+|....+|++|++++|.++.++..   .++|++|++++|... .+| .++.+++
T Consensus        83 l~~lp~~--~~~L~~L~l~~n~-l~~lp~~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~-~lp-~~~~l~~  154 (454)
T 1jl5_A           83 LSSLPEL--PPHLESLVASCNS-LTELPELPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLE-KLP-ELQNSSF  154 (454)
T ss_dssp             CSCCCSC--CTTCSEEECCSSC-CSSCCCCCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCS-SCC-CCTTCTT
T ss_pred             cccCCCC--cCCCCEEEccCCc-CCccccccCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCC-CCc-ccCCCCC
Confidence            4555552  3567777777666 555666555677777766666655432   156777777776444 355 3666777


Q ss_pred             CcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCc
Q 017542           89 LRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGL  168 (369)
Q Consensus        89 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  168 (369)
                      |++|++++|... .+|..   .++|++|++++|.... +| .+..+++|++|++++|.. ..+|..   .++|++|++++
T Consensus       155 L~~L~l~~N~l~-~lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l-~~l~~~---~~~L~~L~l~~  224 (454)
T 1jl5_A          155 LKIIDVDNNSLK-KLPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSL-KKLPDL---PLSLESIVAGN  224 (454)
T ss_dssp             CCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCC-SSCCCC---CTTCCEEECCS
T ss_pred             CCEEECCCCcCc-ccCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcC-CcCCCC---cCcccEEECcC
Confidence            777777776433 34432   2466677776554333 44 456666666666666543 223322   23566666666


Q ss_pred             ccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccchhh-
Q 017542          169 LAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSI-  247 (369)
Q Consensus       169 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~-  247 (369)
                      |.+..+|+ +..+++|++|++++|....+|..   +++|+.|++++|.+.+++..   +++|++|++++|.++.++... 
T Consensus       225 n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~~~~~  297 (454)
T 1jl5_A          225 NILEELPE-LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSELPP  297 (454)
T ss_dssp             SCCSSCCC-CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEESCCCT
T ss_pred             CcCCcccc-cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcccCcCC
Confidence            66665553 55666666666666665555432   24566666666665554432   245555555555555433210 


Q ss_pred             ---------------ccC-CcCcEecccCCcccccCCCCCcccceeccccccccccCCCchhhhHHHhHH
Q 017542          248 ---------------SQL-SRLRWLYLVNCVKLQSLPELPLLLVMLGASDCKRLQFLPELTSCLEELDAS  301 (369)
Q Consensus       248 ---------------~~~-~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~l~~l~~~  301 (369)
                                     ..+ ++|++|++++| .++.+|..+++|+.|+++++ +++.++....+++.|++.
T Consensus       298 ~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N-~l~~lp~~~~~L~~L~L~~N-~l~~lp~~l~~L~~L~L~  365 (454)
T 1jl5_A          298 NLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELPALPPRLERLIASFN-HLAEVPELPQNLKQLHVE  365 (454)
T ss_dssp             TCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECC
T ss_pred             cCCEEECcCCcCCcccCCcCcCCEEECCCC-ccccccccCCcCCEEECCCC-ccccccchhhhccEEECC
Confidence                           011 35555555555 34445554555566665554 344444434444444443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=3e-25  Score=214.06  Aligned_cols=249  Identities=18%  Similarity=0.161  Sum_probs=192.7

Q ss_pred             CccCCCCC--CCCCccEEecCCCCCccccCC-ccC---CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcccccccc
Q 017542            9 LRCFPQNI--HFISSIKIDCYKCVNLREFPR-ISG---NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLST   81 (369)
Q Consensus         9 l~~~p~~~--~~~~L~~L~l~~~~~l~~~~~-~~~---~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~   81 (369)
                      ++.+|...  .+++|++|++++|. +..++. .+.   +|++|++++|.++.++. .+..+++|++|++++|......+.
T Consensus        63 l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~  141 (597)
T 3oja_B           63 MRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG  141 (597)
T ss_dssp             ESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCcCHHHHccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHH
Confidence            55667654  68888899998887 666553 443   88888888888887665 467888888888888765533334


Q ss_pred             cccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhc----------------------------
Q 017542           82 SICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIEN----------------------------  133 (369)
Q Consensus        82 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~----------------------------  133 (369)
                      .+..+++|++|++++|......+..+..+++|++|++++|.........+..                            
T Consensus       142 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n  221 (597)
T 3oja_B          142 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN  221 (597)
T ss_dssp             TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSS
T ss_pred             HhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCC
Confidence            4578888888888888776666777888888888888877644321111111                            


Q ss_pred             ---------CCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCC-CcccccCCCCcEEeecCCCCCCCCccccC
Q 017542          134 ---------LEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQA-PSSIVDLNKLETLSLFECRGLVLPPLLSG  203 (369)
Q Consensus       134 ---------l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  203 (369)
                               .++|+.|++++|....  +..+..+++|+.|++++|.+..+ |..+..+++|+.|++++|....+|..+..
T Consensus       222 ~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~  299 (597)
T 3oja_B          222 SINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQP  299 (597)
T ss_dssp             CCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSC
T ss_pred             cccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCccccc
Confidence                     1235555555543322  24578899999999999999865 67888999999999999998888888888


Q ss_pred             CCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccchhhccCCcCcEecccCCc
Q 017542          204 LSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCV  262 (369)
Q Consensus       204 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~  262 (369)
                      +++|+.|++++|.+..+|..+..+++|++|++++|.++.++  +..+++|+.|++++|+
T Consensus       300 l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          300 IPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHND  356 (597)
T ss_dssp             CTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSC
T ss_pred             CCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCC
Confidence            99999999999999998888888999999999999999875  7788999999999995

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.93  E-value=1.4e-24  Score=213.01  Aligned_cols=144  Identities=19%  Similarity=0.179  Sum_probs=92.4

Q ss_pred             CCCCcCCccCCCC-C-CCCCccEEecCCCCCcccc-CCccC---CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcc
Q 017542            3 MAGCESLRCFPQN-I-HFISSIKIDCYKCVNLREF-PRISG---NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNS   75 (369)
Q Consensus         3 l~~c~~l~~~p~~-~-~~~~L~~L~l~~~~~l~~~-~~~~~---~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~   75 (369)
                      +.++ +++.+|.. + .+++|++|++++|. +..+ |..+.   +|++|++++|.++.+|. .+..+++|++|++++|..
T Consensus        32 Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l  109 (680)
T 1ziw_A           32 LTHN-QLRRLPAANFTRYSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI  109 (680)
T ss_dssp             CCSS-CCCCCCGGGGGGGTTCSEEECCSSC-CCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC
T ss_pred             CCCC-CCCCcCHHHHhCCCcCcEEECCCCc-cCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCcc
Confidence            3443 35556553 3 67778888888777 4444 33332   77888887777777765 477777888888887765


Q ss_pred             cccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhh--cCCCCCeEeecCCCCC
Q 017542           76 LKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIE--NLEGLKQLKLTGCTKL  148 (369)
Q Consensus        76 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~  148 (369)
                      ....+..++++++|++|++++|......+..+..+++|++|++++|......+..+.  .+++|++|++++|...
T Consensus       110 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~  184 (680)
T 1ziw_A          110 QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK  184 (680)
T ss_dssp             CCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred             CccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence            444445677777788888877766655666667777777777776654443333332  3456666666665443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=2.2e-25  Score=201.41  Aligned_cols=253  Identities=19%  Similarity=0.189  Sum_probs=206.4

Q ss_pred             cCCccCCCCCCCCCccEEecCCCCCccccCC-ccC---CeeEEecCCccCcccC-ccCCCCCCCCEEeCcCCcccccccc
Q 017542            7 ESLRCFPQNIHFISSIKIDCYKCVNLREFPR-ISG---NVVELNLMCTPIEEVP-LSIECLPNLETLEMSFCNSLKRLST   81 (369)
Q Consensus         7 ~~l~~~p~~~~~~~L~~L~l~~~~~l~~~~~-~~~---~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~   81 (369)
                      .+++++|..+ .++|++|++++|. +..++. .+.   +|++|++++|.++.++ ..+..+++|++|++++|......+.
T Consensus        41 ~~l~~iP~~~-~~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  118 (353)
T 2z80_A           41 GSLNSIPSGL-TEAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSS  118 (353)
T ss_dssp             TTCSSCCTTC-CTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHH
T ss_pred             CCcccccccc-cccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHh
Confidence            3577888866 4689999999998 777765 343   9999999999999775 4689999999999999866544344


Q ss_pred             cccCCCCCcEEecCCCcCCccCch--hhhccCccceeecccccccccc-chhhhcCCCCCeEeecCCCCCCCCCcccCCC
Q 017542           82 SICKLKSLRSLDLSYCINLESFPE--ILEKMELLEEINLEEASNIKEL-PSSIENLEGLKQLKLTGCTKLGSLPESLGNL  158 (369)
Q Consensus        82 ~~~~~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l  158 (369)
                      .+.++++|++|++++|... .++.  .+..+++|++|++++|.....+ +..+..+++|++|++++|......+..+..+
T Consensus       119 ~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l  197 (353)
T 2z80_A          119 WFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI  197 (353)
T ss_dssp             HHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred             HhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhcc
Confidence            4888999999999998655 4444  7889999999999988655544 5678899999999999988777678889999


Q ss_pred             cchhhhccCcccCCCCCccc-ccCCCCcEEeecCCCCCCCCc----cccCCCCCcEEeccCCCCcc-----CCCCCCCCC
Q 017542          159 KSLERLHAGLLAIPQAPSSI-VDLNKLETLSLFECRGLVLPP----LLSGLSSLKKLELGDCEIME-----IPPDIGCLS  228 (369)
Q Consensus       159 ~~L~~L~l~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~  228 (369)
                      ++|++|++++|.+..++..+ ..+++|+.|++++|.....+.    .......++.++++++.+.+     ++..+..++
T Consensus       198 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~  277 (353)
T 2z80_A          198 QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQIS  277 (353)
T ss_dssp             SEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCT
T ss_pred             ccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhccc
Confidence            99999999999988776543 358999999999998655442    22345678899999888765     555677899


Q ss_pred             CCCEEEccCCcCCccchhh-ccCCcCcEecccCCc
Q 017542          229 SLESLNLSGNNIESLPTSI-SQLSRLRWLYLVNCV  262 (369)
Q Consensus       229 ~L~~L~l~~~~l~~~~~~~-~~~~~L~~L~l~~~~  262 (369)
                      +|++|++++|.++.+|..+ +.+++|++|++++|+
T Consensus       278 ~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          278 GLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence            9999999999999999775 899999999999995

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.92  E-value=7.6e-25  Score=193.87  Aligned_cols=232  Identities=21%  Similarity=0.256  Sum_probs=194.5

Q ss_pred             cCCccCCCCCCCCCccEEecCCCCCccccCCc-cC---CeeEEecCCccCccc---CccCCCCCCCCEEeCcCCcccccc
Q 017542            7 ESLRCFPQNIHFISSIKIDCYKCVNLREFPRI-SG---NVVELNLMCTPIEEV---PLSIECLPNLETLEMSFCNSLKRL   79 (369)
Q Consensus         7 ~~l~~~p~~~~~~~L~~L~l~~~~~l~~~~~~-~~---~L~~L~l~~~~~~~l---~~~~~~~~~L~~L~l~~~~~~~~~   79 (369)
                      .+++++|..+ .+++++|++++|. +..+|.. +.   +|++|++++|.++.+   +..+..+++|++|++++|... .+
T Consensus        17 ~~l~~ip~~~-~~~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l   93 (306)
T 2z66_A           17 KGLTSVPTGI-PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TM   93 (306)
T ss_dssp             SCCSSCCSCC-CTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EE
T ss_pred             CCcccCCCCC-CCCCCEEECCCCc-cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cC
Confidence            3577888866 4789999999998 7788753 33   999999999998754   455667899999999997654 56


Q ss_pred             cccccCCCCCcEEecCCCcCCccCc-hhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCC-CCCcccCC
Q 017542           80 STSICKLKSLRSLDLSYCINLESFP-EILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLG-SLPESLGN  157 (369)
Q Consensus        80 ~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~  157 (369)
                      +..+..+++|++|++++|......+ ..+..+++|++|++++|......+..+..+++|++|++++|.... ..+..+..
T Consensus        94 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  173 (306)
T 2z66_A           94 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE  173 (306)
T ss_dssp             EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred             hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhh
Confidence            7778899999999999986554433 578899999999999888777777788999999999999976554 46778899


Q ss_pred             CcchhhhccCcccCCCC-CcccccCCCCcEEeecCCCCCCCCc-cccCCCCCcEEeccCCCCcc-CCCCCCCC-CCCCEE
Q 017542          158 LKSLERLHAGLLAIPQA-PSSIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIME-IPPDIGCL-SSLESL  233 (369)
Q Consensus       158 l~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~-~~~~~~~~-~~L~~L  233 (369)
                      +++|++|++++|.+..+ +..+..+++|++|++++|....++. .+..+++|+.|++++|.+.+ .+..+..+ ++|++|
T Consensus       174 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L  253 (306)
T 2z66_A          174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL  253 (306)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEE
T ss_pred             CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEE
Confidence            99999999999999866 5678889999999999999777664 67889999999999999988 45556776 499999


Q ss_pred             EccCCcCC
Q 017542          234 NLSGNNIE  241 (369)
Q Consensus       234 ~l~~~~l~  241 (369)
                      ++++|.++
T Consensus       254 ~L~~N~~~  261 (306)
T 2z66_A          254 NLTQNDFA  261 (306)
T ss_dssp             ECTTCCEE
T ss_pred             EccCCCee
Confidence            99999887

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.92  E-value=2.3e-23  Score=193.85  Aligned_cols=250  Identities=24%  Similarity=0.226  Sum_probs=180.5

Q ss_pred             CCccCCCCCCCCCccEEecCCCCCccccCCccCCeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCC
Q 017542            8 SLRCFPQNIHFISSIKIDCYKCVNLREFPRISGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLK   87 (369)
Q Consensus         8 ~l~~~p~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~   87 (369)
                      .++.+|..  +++|++|++++|. +..++....+|++|++++|.++.+| .+..+++|++|++++|... .+|..   ..
T Consensus       102 ~l~~lp~~--~~~L~~L~l~~n~-l~~l~~~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~-~lp~~---~~  173 (454)
T 1jl5_A          102 SLTELPEL--PQSLKSLLVDNNN-LKALSDLPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLK-KLPDL---PP  173 (454)
T ss_dssp             CCSSCCCC--CTTCCEEECCSSC-CSCCCSCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS-CCCCC---CT
T ss_pred             cCCccccc--cCCCcEEECCCCc-cCcccCCCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCc-ccCCC---cc
Confidence            45556653  4789999999987 7888776679999999999999888 4899999999999997654 45543   35


Q ss_pred             CCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccC
Q 017542           88 SLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAG  167 (369)
Q Consensus        88 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  167 (369)
                      +|++|++++|.... +| .++.+++|++|++++|...+ +|..   .++|++|++++|. +..+|. +..+++|++|+++
T Consensus       174 ~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~l~  245 (454)
T 1jl5_A          174 SLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNI-LEELPE-LQNLPFLTTIYAD  245 (454)
T ss_dssp             TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSC-CSSCCC-CTTCTTCCEEECC
T ss_pred             cccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCc-CCcccc-cCCCCCCCEEECC
Confidence            89999999875544 56 57889999999998776443 4332   2478888888864 346663 7788888888888


Q ss_pred             cccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCC---C-------------CC-CCCC
Q 017542          168 LLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPD---I-------------GC-LSSL  230 (369)
Q Consensus       168 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~-------------~~-~~~L  230 (369)
                      +|.+..+|..   +++|+.|++++|....+|..   +++|+.|++++|.+.+++..   +             .. .++|
T Consensus       246 ~N~l~~l~~~---~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L  319 (454)
T 1jl5_A          246 NNLLKTLPDL---PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSL  319 (454)
T ss_dssp             SSCCSSCCSC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTC
T ss_pred             CCcCCccccc---ccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcC
Confidence            8887776653   36677777777775555543   24555555555555442211   0             11 2478


Q ss_pred             CEEEccCCcCCccchhhccCCcCcEecccCCcccccCCCCCcccceecccccc
Q 017542          231 ESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPELPLLLVMLGASDCK  283 (369)
Q Consensus       231 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~c~  283 (369)
                      ++|++++|.++.+|..   +++|++|++++| .++.+|..+++|+.|++++++
T Consensus       320 ~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N-~l~~lp~~l~~L~~L~L~~N~  368 (454)
T 1jl5_A          320 EELNVSNNKLIELPAL---PPRLERLIASFN-HLAEVPELPQNLKQLHVEYNP  368 (454)
T ss_dssp             CEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSC
T ss_pred             CEEECCCCcccccccc---CCcCCEEECCCC-ccccccchhhhccEEECCCCC
Confidence            8888888888877653   588999999988 677788777889999988764

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.92  E-value=9.1e-24  Score=184.99  Aligned_cols=218  Identities=23%  Similarity=0.295  Sum_probs=187.9

Q ss_pred             eEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccc
Q 017542           43 VELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEAS  122 (369)
Q Consensus        43 ~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  122 (369)
                      ++++.+++.++.+|..+  .++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++++|.
T Consensus        14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence            57788888899988643  5799999999987666555678899999999999987766668889999999999999887


Q ss_pred             ccccc-chhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCc-ccccCCCCcEEeecCCCCCCCCc-
Q 017542          123 NIKEL-PSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPS-SIVDLNKLETLSLFECRGLVLPP-  199 (369)
Q Consensus       123 ~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~-  199 (369)
                      .+..+ +..+..+++|++|++++|......+..+..+++|++|++++|.+..++. .+..+++|++|++++|....++. 
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  171 (285)
T 1ozn_A           92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER  171 (285)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH
Confidence            45544 6788999999999999987666667778999999999999999998765 47889999999999999877775 


Q ss_pred             cccCCCCCcEEeccCCCCccC-CCCCCCCCCCCEEEccCCcCCccc-hhhccCCcCcEecccCCc
Q 017542          200 LLSGLSSLKKLELGDCEIMEI-PPDIGCLSSLESLNLSGNNIESLP-TSISQLSRLRWLYLVNCV  262 (369)
Q Consensus       200 ~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~  262 (369)
                      .+..+++|+.|++++|.+.++ +..+..+++|++|++++|.++.++ ..+..+++|++|++++|+
T Consensus       172 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence            588899999999999999884 777888999999999999999877 458899999999999995

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=2.3e-26  Score=204.13  Aligned_cols=240  Identities=17%  Similarity=0.115  Sum_probs=187.2

Q ss_pred             CCCCccEEecCCCCCccccCCccC-CeeEEecCCccCc--ccCccCC-------CCCCCCEEeCcCCcccccccccc--c
Q 017542           17 HFISSIKIDCYKCVNLREFPRISG-NVVELNLMCTPIE--EVPLSIE-------CLPNLETLEMSFCNSLKRLSTSI--C   84 (369)
Q Consensus        17 ~~~~L~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~--~l~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~--~   84 (369)
                      ..++|+.+++++|. + .+|..++ .|+.|+++++.++  .++..+.       .+++|++|++++|...+.+|..+  .
T Consensus        41 ~~~~L~~l~l~~n~-l-~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  118 (312)
T 1wwl_A           41 GGRSLEYLLKRVDT-E-ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA  118 (312)
T ss_dssp             EEEECTTHHHHCCT-T-CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred             cCCCceeEeecccc-c-ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence            45668888888888 4 6776544 7888899888885  3454343       68899999999988777777765  7


Q ss_pred             CCCCCcEEecCCCcCCccCchhhhcc-----CccceeeccccccccccchhhhcCCCCCeEeecCCCCCCC--CCccc--
Q 017542           85 KLKSLRSLDLSYCINLESFPEILEKM-----ELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGS--LPESL--  155 (369)
Q Consensus        85 ~~~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~--  155 (369)
                      .+++|++|++++|..... |..++.+     ++|++|++++|......+..+..+++|++|++++|...+.  .+..+  
T Consensus       119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  197 (312)
T 1wwl_A          119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP  197 (312)
T ss_dssp             CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred             cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence            899999999999866555 7777777     8999999998877666667888999999999999775543  22233  


Q ss_pred             CCCcchhhhccCcccCCCCCc----ccccCCCCcEEeecCCCCCCCC--ccccCCCCCcEEeccCCCCccCCCCCCCCCC
Q 017542          156 GNLKSLERLHAGLLAIPQAPS----SIVDLNKLETLSLFECRGLVLP--PLLSGLSSLKKLELGDCEIMEIPPDIGCLSS  229 (369)
Q Consensus       156 ~~l~~L~~L~l~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  229 (369)
                      ..+++|++|++++|.+..++.    .+..+++|++|++++|.....+  ..+..+++|++|++++|.+..+|..+.  ++
T Consensus       198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~  275 (312)
T 1wwl_A          198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AK  275 (312)
T ss_dssp             TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SE
T ss_pred             ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CC
Confidence            788899999999998874432    2346789999999999866544  345567889999999999988877665  78


Q ss_pred             CCEEEccCCcCCccchhhccCCcCcEecccCCc
Q 017542          230 LESLNLSGNNIESLPTSISQLSRLRWLYLVNCV  262 (369)
Q Consensus       230 L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~  262 (369)
                      |++|++++|.++.+|. +..+++|++|++++|+
T Consensus       276 L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          276 LSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNP  307 (312)
T ss_dssp             EEEEECCSSCCCSCCC-TTTSCEEEEEECTTCT
T ss_pred             ceEEECCCCCCCCChh-HhhCCCCCEEeccCCC
Confidence            9999999999998876 8888999999999883

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.91  E-value=2.6e-23  Score=193.30  Aligned_cols=239  Identities=21%  Similarity=0.190  Sum_probs=200.9

Q ss_pred             CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccc
Q 017542           41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE  120 (369)
Q Consensus        41 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  120 (369)
                      ..+.++.++..++.+|..+.  +++++|++++|......+..+.++++|++|++++|......+..+..+++|++|++++
T Consensus        44 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             TSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            46678888888999997654  7899999999877666667889999999999999887776778899999999999998


Q ss_pred             cccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcc-cCCCCCc-ccccCCCCcEEeecCCCCCCCC
Q 017542          121 ASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLL-AIPQAPS-SIVDLNKLETLSLFECRGLVLP  198 (369)
Q Consensus       121 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~  198 (369)
                      |......+..+..+++|++|++++|......+..+..+++|++|+++++ .+..++. .+..+++|++|++++|....+|
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~  201 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP  201 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred             CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc
Confidence            8665555557889999999999997755545557889999999999985 4555543 6788999999999999988888


Q ss_pred             ccccCCCCCcEEeccCCCCccC-CCCCCCCCCCCEEEccCCcCCccc-hhhccCCcCcEecccCCcccccCCC----CCc
Q 017542          199 PLLSGLSSLKKLELGDCEIMEI-PPDIGCLSSLESLNLSGNNIESLP-TSISQLSRLRWLYLVNCVKLQSLPE----LPL  272 (369)
Q Consensus       199 ~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~----~~~  272 (369)
                      . +..+++|+.|++++|.+.++ +..+..+++|++|++++|.++.++ ..+..+++|++|++++| .++.++.    ..+
T Consensus       202 ~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~  279 (440)
T 3zyj_A          202 N-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLH  279 (440)
T ss_dssp             C-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCT
T ss_pred             c-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhcccc
Confidence            5 78899999999999999985 667889999999999999999664 56789999999999999 6777664    236


Q ss_pred             ccceecccccc
Q 017542          273 LLVMLGASDCK  283 (369)
Q Consensus       273 ~L~~L~l~~c~  283 (369)
                      +|+.|++.+++
T Consensus       280 ~L~~L~L~~Np  290 (440)
T 3zyj_A          280 HLERIHLHHNP  290 (440)
T ss_dssp             TCCEEECCSSC
T ss_pred             CCCEEEcCCCC
Confidence            78888888765

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.91  E-value=2.4e-23  Score=194.22  Aligned_cols=239  Identities=23%  Similarity=0.205  Sum_probs=200.8

Q ss_pred             CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccc
Q 017542           41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE  120 (369)
Q Consensus        41 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  120 (369)
                      ....++.++..++.+|..+.  +++++|++++|......+..+.++++|++|++++|......+..+..+++|++|++++
T Consensus        55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            45678888888899987554  6999999999887776677899999999999999987777778899999999999998


Q ss_pred             cccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcc-cCCCCCc-ccccCCCCcEEeecCCCCCCCC
Q 017542          121 ASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLL-AIPQAPS-SIVDLNKLETLSLFECRGLVLP  198 (369)
Q Consensus       121 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~  198 (369)
                      |......+..+..+++|++|++++|......+..+..+++|++|+++++ .+..++. .+..+++|+.|++++|....+|
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~  212 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP  212 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC
T ss_pred             CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc
Confidence            8766555566889999999999997755444557889999999999984 4555543 5788999999999999988887


Q ss_pred             ccccCCCCCcEEeccCCCCccC-CCCCCCCCCCCEEEccCCcCCcc-chhhccCCcCcEecccCCcccccCCC----CCc
Q 017542          199 PLLSGLSSLKKLELGDCEIMEI-PPDIGCLSSLESLNLSGNNIESL-PTSISQLSRLRWLYLVNCVKLQSLPE----LPL  272 (369)
Q Consensus       199 ~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~----~~~  272 (369)
                      . +..+++|+.|++++|.+.++ +..+..+++|++|++++|.++.+ +..+..+++|++|++++| .++.++.    ..+
T Consensus       213 ~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~  290 (452)
T 3zyi_A          213 N-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLR  290 (452)
T ss_dssp             C-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCT
T ss_pred             c-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhcccc
Confidence            5 77889999999999999985 56688999999999999999966 467889999999999999 6777764    246


Q ss_pred             ccceecccccc
Q 017542          273 LLVMLGASDCK  283 (369)
Q Consensus       273 ~L~~L~l~~c~  283 (369)
                      +|+.|++.+++
T Consensus       291 ~L~~L~L~~Np  301 (452)
T 3zyi_A          291 YLVELHLHHNP  301 (452)
T ss_dssp             TCCEEECCSSC
T ss_pred             CCCEEEccCCC
Confidence            78899988775

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.91  E-value=6.4e-25  Score=195.25  Aligned_cols=237  Identities=18%  Similarity=0.093  Sum_probs=118.8

Q ss_pred             CCCccEEecCCCCCccccC-Ccc---CCeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEe
Q 017542           18 FISSIKIDCYKCVNLREFP-RIS---GNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLD   93 (369)
Q Consensus        18 ~~~L~~L~l~~~~~l~~~~-~~~---~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~   93 (369)
                      +++|++|++++|. +..++ ..+   .+|++|++++|.++.++. +..+++|++|++++|... .++    ..++|++|+
T Consensus        33 ~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~-~l~----~~~~L~~L~  105 (317)
T 3o53_A           33 AWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ-ELL----VGPSIETLH  105 (317)
T ss_dssp             GGGCSEEECTTSC-CCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEE-EEE----ECTTCCEEE
T ss_pred             CCCCCEEECcCCc-cCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccc-ccc----CCCCcCEEE
Confidence            3455555555555 33333 222   255555555555554433 555555555555554322 222    235555555


Q ss_pred             cCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCccc-CCCcchhhhccCcccCC
Q 017542           94 LSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESL-GNLKSLERLHAGLLAIP  172 (369)
Q Consensus        94 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~  172 (369)
                      +++|......+.   .+++|++|++++|......+..+..+++|++|++++|......+..+ ..+++|++|++++|.+.
T Consensus       106 l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  182 (317)
T 3o53_A          106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (317)
T ss_dssp             CCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence            555543332221   24555555555554444333445555555555555544333222222 24555555555555555


Q ss_pred             CCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCC--ccchhhccC
Q 017542          173 QAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIE--SLPTSISQL  250 (369)
Q Consensus       173 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~--~~~~~~~~~  250 (369)
                      .++.. ..+++|++|++++|....++..+..+++|+.|++++|.+..++..+..+++|++|++++|.++  .++..+..+
T Consensus       183 ~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~  261 (317)
T 3o53_A          183 DVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN  261 (317)
T ss_dssp             EEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTC
T ss_pred             ccccc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhcc
Confidence            44322 235555555555555555554455555555555555555555555555555555555555555  444455555


Q ss_pred             CcCcEecccCCcccc
Q 017542          251 SRLRWLYLVNCVKLQ  265 (369)
Q Consensus       251 ~~L~~L~l~~~~~l~  265 (369)
                      ++|+.++++++..++
T Consensus       262 ~~L~~l~l~~~~~l~  276 (317)
T 3o53_A          262 QRVQTVAKQTVKKLT  276 (317)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             ccceEEECCCchhcc
Confidence            555555555544443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.91  E-value=9.1e-23  Score=198.29  Aligned_cols=136  Identities=20%  Similarity=0.154  Sum_probs=85.9

Q ss_pred             CCccCCCCCCCCCccEEecCCCCCccccCC-ccC---CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCccccccccc
Q 017542            8 SLRCFPQNIHFISSIKIDCYKCVNLREFPR-ISG---NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTS   82 (369)
Q Consensus         8 ~l~~~p~~~~~~~L~~L~l~~~~~l~~~~~-~~~---~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~   82 (369)
                      +++++|..+ .+++++|++++|. ++.++. .+.   +|++|++++|.++.++. .|..+++|++|+|++|......+..
T Consensus        42 ~l~~vP~~l-p~~~~~LdLs~N~-i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~  119 (635)
T 4g8a_A           42 NFYKIPDNL-PFSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA  119 (635)
T ss_dssp             CCSSCCSSS-CTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGG
T ss_pred             CcCccCCCC-CcCCCEEEeeCCC-CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHH
Confidence            566777655 3457777777777 666653 233   77777777777776654 4677777777777776544333345


Q ss_pred             ccCCCCCcEEecCCCcCCccCchhhhccCccceeecccccccc-ccchhhhcCCCCCeEeecCC
Q 017542           83 ICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIK-ELPSSIENLEGLKQLKLTGC  145 (369)
Q Consensus        83 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~  145 (369)
                      |.++++|++|++++|......+..++.+++|++|++++|.... ..|..+..+++|++|++++|
T Consensus       120 f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N  183 (635)
T 4g8a_A          120 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN  183 (635)
T ss_dssp             GTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred             hcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence            6667777777777765544444456667777777776665433 34455556666666666554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.90  E-value=5.3e-24  Score=189.34  Aligned_cols=284  Identities=16%  Similarity=0.133  Sum_probs=183.3

Q ss_pred             CccEEecCCCCCccccCC----ccCCeeEEecCCccCcccC-ccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEec
Q 017542           20 SSIKIDCYKCVNLREFPR----ISGNVVELNLMCTPIEEVP-LSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDL   94 (369)
Q Consensus        20 ~L~~L~l~~~~~l~~~~~----~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l   94 (369)
                      .++..+++.+. +..++.    ...+|++|++++|.++.++ ..+..+++|++|++++|...+..+  +..+++|++|++
T Consensus        11 ~l~i~~ls~~~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L   87 (317)
T 3o53_A           11 RYKIEKVTDSS-LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL   87 (317)
T ss_dssp             EEEEESCCTTT-HHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred             ceeEeeccccc-hhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence            35566666665 443322    2237888888888888665 467788888888888876544333  777888888888


Q ss_pred             CCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCC
Q 017542           95 SYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQA  174 (369)
Q Consensus        95 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  174 (369)
                      ++|... .++    ..++|++|++++|......+.   .+++|++|++++|......+..+..+++|++|++++|.+..+
T Consensus        88 s~n~l~-~l~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  159 (317)
T 3o53_A           88 NNNYVQ-ELL----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV  159 (317)
T ss_dssp             CSSEEE-EEE----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred             cCCccc-ccc----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence            887533 222    347888888887765443332   356788888888665554455667778888888888877754


Q ss_pred             C-ccc-ccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccchhhccCCc
Q 017542          175 P-SSI-VDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSR  252 (369)
Q Consensus       175 ~-~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~  252 (369)
                      + ..+ ..+++|++|++++|....++.. ..+++|+.|++++|.+.+++..+..+++|++|++++|.++.+|..+..+++
T Consensus       160 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~  238 (317)
T 3o53_A          160 NFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQN  238 (317)
T ss_dssp             EGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTT
T ss_pred             cHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCC
Confidence            3 333 3567888888888876666542 346778888888888877766677777888888888888877777777788


Q ss_pred             CcEecccCCcccccCCCCCcccceeccccccccccCCCchhhhHHHhHHHHHhhhccccccccCCCCCcEEEecCccCcc
Q 017542          253 LRWLYLVNCVKLQSLPELPLLLVMLGASDCKRLQFLPELTSCLEELDASILQALSNRTGERLSKHMSPVQLIFANCLKLN  332 (369)
Q Consensus       253 L~~L~l~~~~~l~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~l~  332 (369)
                      |++|++++|+. .                |..+...-...+.++.+++..+..++........ ........-..|..++
T Consensus       239 L~~L~l~~N~~-~----------------~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~-~~~~~~~~~~cc~~l~  300 (317)
T 3o53_A          239 LEHFDLRGNGF-H----------------CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT-VPTLGHYGAYCCEDLP  300 (317)
T ss_dssp             CCEEECTTCCC-B----------------HHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCCS-STTCEEETTEEEBCCT
T ss_pred             CCEEEccCCCc-c----------------CcCHHHHHhccccceEEECCCchhccCCchhccC-CCceecccceeeccCC
Confidence            88888887742 2                1111111123456777777777766543222211 1122233344677776


Q ss_pred             h
Q 017542          333 E  333 (369)
Q Consensus       333 ~  333 (369)
                      .
T Consensus       301 ~  301 (317)
T 3o53_A          301 A  301 (317)
T ss_dssp             T
T ss_pred             h
Confidence            4

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.90  E-value=6.5e-22  Score=189.84  Aligned_cols=243  Identities=22%  Similarity=0.213  Sum_probs=175.4

Q ss_pred             cCCccCCCCCCCCCccEEecCCCCCccccCCccCCeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCC
Q 017542            7 ESLRCFPQNIHFISSIKIDCYKCVNLREFPRISGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKL   86 (369)
Q Consensus         7 ~~l~~~p~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~   86 (369)
                      .+++.+|..+. ++|++|++++|. +..+|..+.+|++|++++|.++.+|.   .+++|++|++++|.. ..+|.   .+
T Consensus        50 n~L~~lp~~l~-~~L~~L~L~~N~-l~~lp~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l-~~l~~---~l  120 (622)
T 3g06_A           50 SGLTTLPDCLP-AHITTLVIPDNN-LTSLPALPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPL-THLPA---LP  120 (622)
T ss_dssp             SCCSCCCSCCC-TTCSEEEECSCC-CSCCCCCCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCC-CCCCC---CC
T ss_pred             CCcCccChhhC-CCCcEEEecCCC-CCCCCCcCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcC-CCCCC---CC
Confidence            35778888764 889999999998 88888877799999999999998886   578999999998754 44554   46


Q ss_pred             CCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhcc
Q 017542           87 KSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHA  166 (369)
Q Consensus        87 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  166 (369)
                      ++|+.|++++|... .+|..   +++|++|++++|... .++.   .+++|+.|++++|. +..++   ..+++|+.|++
T Consensus       121 ~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~-~l~~---~~~~L~~L~L~~N~-l~~l~---~~~~~L~~L~L  188 (622)
T 3g06_A          121 SGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLA-SLPA---LPSELCKLWAYNNQ-LTSLP---MLPSGLQELSV  188 (622)
T ss_dssp             TTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSC-CSCCC---CCCTTCCEEEC
T ss_pred             CCcCEEECCCCCCC-cCCCC---CCCCCEEECcCCcCC-CcCC---ccCCCCEEECCCCC-CCCCc---ccCCCCcEEEC
Confidence            88999999987543 45543   488999999977543 4443   34678888888754 44455   34677888888


Q ss_pred             CcccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccchh
Q 017542          167 GLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTS  246 (369)
Q Consensus       167 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~  246 (369)
                      ++|.+..+|..   +++|+.|++++|....+|..   +++|+.|++++|.+..++   ..+++|++|++++|.++.+|. 
T Consensus       189 s~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~-  258 (622)
T 3g06_A          189 SDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM-  258 (622)
T ss_dssp             CSSCCSCCCCC---CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-
T ss_pred             CCCCCCCCCCc---cchhhEEECcCCcccccCCC---CCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc-
Confidence            88888776653   36777888887777666643   367778888888777765   345677788888887777775 


Q ss_pred             hccCCcCcEecccCCcccccCCCC---Ccccceecccccc
Q 017542          247 ISQLSRLRWLYLVNCVKLQSLPEL---PLLLVMLGASDCK  283 (369)
Q Consensus       247 ~~~~~~L~~L~l~~~~~l~~~~~~---~~~L~~L~l~~c~  283 (369)
                        .+++|++|++++| .++.+|..   .++|+.|++++++
T Consensus       259 --~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          259 --LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             --CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred             --ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence              5677778888777 56666542   2455666665554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.89  E-value=1.9e-22  Score=175.74  Aligned_cols=214  Identities=21%  Similarity=0.229  Sum_probs=125.8

Q ss_pred             EecCCCCCccccCCccC-CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCc
Q 017542           24 IDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLE  101 (369)
Q Consensus        24 L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  101 (369)
                      .+..+.. +..+|..++ +|++|+++++.++.++. .+..+++|++|++++|......+..+..+++|++|++++|....
T Consensus        12 ~~c~~~~-l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~   90 (276)
T 2z62_A           12 YQCMELN-FYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS   90 (276)
T ss_dssp             EECTTSC-CSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred             EEecCCC-ccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc
Confidence            3444433 555665444 56666666666665544 45566666666666654443333345556666666666654444


Q ss_pred             cCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCC--CCcccc
Q 017542          102 SFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQ--APSSIV  179 (369)
Q Consensus       102 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~l~  179 (369)
                      ..+..+..+++|++|++++|......                        +..+..+++|++|++++|.+..  +|..+.
T Consensus        91 ~~~~~~~~l~~L~~L~l~~n~l~~~~------------------------~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~  146 (276)
T 2z62_A           91 LALGAFSGLSSLQKLVAVETNLASLE------------------------NFPIGHLKTLKELNVAHNLIQSFKLPEYFS  146 (276)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCCCST------------------------TCCCTTCTTCCEEECCSSCCCCCCCCGGGG
T ss_pred             cChhhhcCCccccEEECCCCCccccC------------------------chhcccCCCCCEEECcCCccceecCchhhc
Confidence            44444555555555555544333222                        2234445555555555555543  455666


Q ss_pred             cCCCCcEEeecCCCCCCCC-ccccCCCCCc----EEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccchh-hccCCcC
Q 017542          180 DLNKLETLSLFECRGLVLP-PLLSGLSSLK----KLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTS-ISQLSRL  253 (369)
Q Consensus       180 ~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L  253 (369)
                      .+++|++|++++|....++ ..+..+++|+    .|++++|.+..++.......+|++|++++|.++.++.. +..+++|
T Consensus       147 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L  226 (276)
T 2z62_A          147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSL  226 (276)
T ss_dssp             GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSC
T ss_pred             cCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccc
Confidence            6677777777777655443 2343344444    77888888777665555556788888888888877644 4778888


Q ss_pred             cEecccCCc
Q 017542          254 RWLYLVNCV  262 (369)
Q Consensus       254 ~~L~l~~~~  262 (369)
                      ++|++++|+
T Consensus       227 ~~L~l~~N~  235 (276)
T 2z62_A          227 QKIWLHTNP  235 (276)
T ss_dssp             CEEECCSSC
T ss_pred             cEEEccCCc
Confidence            888888874

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.89  E-value=1.1e-21  Score=188.35  Aligned_cols=237  Identities=26%  Similarity=0.267  Sum_probs=195.7

Q ss_pred             CCccEEecCCCCCccccCCccC-CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCC
Q 017542           19 ISSIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYC   97 (369)
Q Consensus        19 ~~L~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~   97 (369)
                      .+++.|+++++. +..+|..++ +|++|++++|.++.+|.   .+++|++|++++|.. +.+|.   .+++|++|++++|
T Consensus        40 ~~l~~L~ls~n~-L~~lp~~l~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l-~~lp~---~l~~L~~L~Ls~N  111 (622)
T 3g06_A           40 NGNAVLNVGESG-LTTLPDCLPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQL-TSLPV---LPPGLLELSIFSN  111 (622)
T ss_dssp             HCCCEEECCSSC-CSCCCSCCCTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCC-SCCCC---CCTTCCEEEECSC
T ss_pred             CCCcEEEecCCC-cCccChhhCCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcC-CcCCC---CCCCCCEEECcCC
Confidence            358999999998 889998665 99999999999999887   578999999999764 45665   6799999999997


Q ss_pred             cCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcc
Q 017542           98 INLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSS  177 (369)
Q Consensus        98 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  177 (369)
                      ... .+|.   .+++|++|++++|. +..+|..   +++|++|++++|. ++.++.   .+++|+.|++++|.+..+|  
T Consensus       112 ~l~-~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~-l~~l~~---~~~~L~~L~L~~N~l~~l~--  177 (622)
T 3g06_A          112 PLT-HLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQ-LASLPA---LPSELCKLWAYNNQLTSLP--  177 (622)
T ss_dssp             CCC-CCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSCCC--
T ss_pred             cCC-CCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCc-CCCcCC---ccCCCCEEECCCCCCCCCc--
Confidence            544 4554   67899999999776 4445553   5899999999974 455554   3567899999999999987  


Q ss_pred             cccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccchhhccCCcCcEec
Q 017542          178 IVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLY  257 (369)
Q Consensus       178 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~  257 (369)
                       ..+++|+.|++++|....+|..   .++|+.|++++|.+..++..   +++|++|++++|.++.+|   ..+++|++|+
T Consensus       178 -~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~  247 (622)
T 3g06_A          178 -MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP---VLPSELKELM  247 (622)
T ss_dssp             -CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC---CCCTTCCEEE
T ss_pred             -ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCCC---CCCCCEEEccCCccCcCC---CCCCcCcEEE
Confidence             4568999999999998887764   47899999999999987753   479999999999999988   4678999999


Q ss_pred             ccCCcccccCCCCCcccceeccccccccccCC
Q 017542          258 LVNCVKLQSLPELPLLLVMLGASDCKRLQFLP  289 (369)
Q Consensus       258 l~~~~~l~~~~~~~~~L~~L~l~~c~~L~~l~  289 (369)
                      +++| .++.+|..+++|+.|++++| .+..++
T Consensus       248 Ls~N-~L~~lp~~~~~L~~L~Ls~N-~L~~lp  277 (622)
T 3g06_A          248 VSGN-RLTSLPMLPSGLLSLSVYRN-QLTRLP  277 (622)
T ss_dssp             CCSS-CCSCCCCCCTTCCEEECCSS-CCCSCC
T ss_pred             CCCC-CCCcCCcccccCcEEeCCCC-CCCcCC
Confidence            9999 78889888889999999887 444443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.89  E-value=2.7e-22  Score=174.81  Aligned_cols=212  Identities=20%  Similarity=0.163  Sum_probs=156.9

Q ss_pred             CCccCCCCCCCCCccEEecCCCCCccccCC-ccC---CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCccccccccc
Q 017542            8 SLRCFPQNIHFISSIKIDCYKCVNLREFPR-ISG---NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTS   82 (369)
Q Consensus         8 ~l~~~p~~~~~~~L~~L~l~~~~~l~~~~~-~~~---~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~   82 (369)
                      ++..+|..+ .++|++|++++|. +..++. .+.   +|++|++++|.++.++. .+..+++|++|++++|......+..
T Consensus        18 ~l~~ip~~l-~~~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~   95 (276)
T 2z62_A           18 NFYKIPDNL-PFSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA   95 (276)
T ss_dssp             CCSSCCSSS-CTTCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred             CccccCCCC-CCCccEEECCCCc-ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhh
Confidence            355678766 3679999999998 777664 343   99999999999998765 6889999999999998776666677


Q ss_pred             ccCCCCCcEEecCCCcCCccCchhhhccCccceeecccccccc-ccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcch
Q 017542           83 ICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIK-ELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSL  161 (369)
Q Consensus        83 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L  161 (369)
                      +.++++|++|++++|......+..+..+++|++|++++|.... .+|..+..+++|++|++++|......+..+..++++
T Consensus        96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  175 (276)
T 2z62_A           96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM  175 (276)
T ss_dssp             TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred             hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhc
Confidence            8999999999999987666555568899999999999877655 357778888888888888865433322223222222


Q ss_pred             hhhccCcccCCCCCcccccCCCCc-EEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCC-CCCCCCCCEEEccCCc
Q 017542          162 ERLHAGLLAIPQAPSSIVDLNKLE-TLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPD-IGCLSSLESLNLSGNN  239 (369)
Q Consensus       162 ~~L~l~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~  239 (369)
                      +                    .+. +|++++|....++.......+|+.|++++|.+..++.. +..+++|++|++++|.
T Consensus       176 ~--------------------~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          176 P--------------------LLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             T--------------------TCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred             c--------------------ccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence            2                    222 66777777665555444445788888888888776554 4678888888888887


Q ss_pred             CC
Q 017542          240 IE  241 (369)
Q Consensus       240 l~  241 (369)
                      ++
T Consensus       236 ~~  237 (276)
T 2z62_A          236 WD  237 (276)
T ss_dssp             BC
T ss_pred             cc
Confidence            65

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=2.6e-23  Score=195.25  Aligned_cols=231  Identities=17%  Similarity=0.088  Sum_probs=157.0

Q ss_pred             CCCccEEecCCCCCccccC-CccC---CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEe
Q 017542           18 FISSIKIDCYKCVNLREFP-RISG---NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLD   93 (369)
Q Consensus        18 ~~~L~~L~l~~~~~l~~~~-~~~~---~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~   93 (369)
                      +++|++|++++|. +..++ ..+.   +|++|++++|.++.++. +..+++|++|++++|... .++.    .++|++|+
T Consensus        33 ~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~-~l~~----~~~L~~L~  105 (487)
T 3oja_A           33 AWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ-ELLV----GPSIETLH  105 (487)
T ss_dssp             GGGCCEEECCSSC-CCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEE-EEEE----CTTCCEEE
T ss_pred             CCCccEEEeeCCc-CCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCC-CCCC----CCCcCEEE
Confidence            3467788888777 55443 3333   77778887777775544 677777888888776432 3332    36777888


Q ss_pred             cCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccC-CCcchhhhccCcccCC
Q 017542           94 LSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLG-NLKSLERLHAGLLAIP  172 (369)
Q Consensus        94 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~  172 (369)
                      +++|......+.   .+++|++|++++|......+..+..+++|+.|++++|...+..+..+. .+++|+.|++++|.+.
T Consensus       106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            877655443332   456777777777666555566677777777787777665554555453 5777777777777777


Q ss_pred             CCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCC--ccchhhccC
Q 017542          173 QAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIE--SLPTSISQL  250 (369)
Q Consensus       173 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~--~~~~~~~~~  250 (369)
                      .++. ...+++|+.|++++|....+|..+..+++|+.|++++|.+.++|..+..+++|+.|++++|.+.  .+|..+..+
T Consensus       183 ~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l  261 (487)
T 3oja_A          183 DVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN  261 (487)
T ss_dssp             EEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTC
T ss_pred             cccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhC
Confidence            6543 3346777777777777766666677777777777777777777777777777777777777776  566666777


Q ss_pred             CcCcEeccc
Q 017542          251 SRLRWLYLV  259 (369)
Q Consensus       251 ~~L~~L~l~  259 (369)
                      +.|+.++++
T Consensus       262 ~~L~~l~~~  270 (487)
T 3oja_A          262 QRVQTVAKQ  270 (487)
T ss_dssp             HHHHHHHHH
T ss_pred             CCCcEEecc
Confidence            777777665

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.89  E-value=4.3e-24  Score=189.49  Aligned_cols=235  Identities=19%  Similarity=0.165  Sum_probs=186.2

Q ss_pred             CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccc-ccccccc-------CCCCCcEEecCCCcCCccCchhh--hcc
Q 017542           41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLK-RLSTSIC-------KLKSLRSLDLSYCINLESFPEIL--EKM  110 (369)
Q Consensus        41 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~--~~l  110 (369)
                      +|++|+++++.+ .+|..+...  |++|++++|.... .++..+.       .+++|++|++++|......|..+  ..+
T Consensus        44 ~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l  120 (312)
T 1wwl_A           44 SLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG  120 (312)
T ss_dssp             ECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred             CceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence            688888888888 777654433  8889999876632 4555444       68999999999988777777765  899


Q ss_pred             CccceeeccccccccccchhhhcC-----CCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCC---CCccc--cc
Q 017542          111 ELLEEINLEEASNIKELPSSIENL-----EGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQ---APSSI--VD  180 (369)
Q Consensus       111 ~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---~~~~l--~~  180 (369)
                      ++|++|++++|..... |..+..+     ++|++|++++|......+..++.+++|++|++++|.+.+   ++..+  ..
T Consensus       121 ~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~  199 (312)
T 1wwl_A          121 PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK  199 (312)
T ss_dssp             CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred             CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence            9999999998876555 7777776     899999999987766666789999999999999998653   23333  77


Q ss_pred             CCCCcEEeecCCCCCCCC----ccccCCCCCcEEeccCCCCccCC--CCCCCCCCCCEEEccCCcCCccchhhccCCcCc
Q 017542          181 LNKLETLSLFECRGLVLP----PLLSGLSSLKKLELGDCEIMEIP--PDIGCLSSLESLNLSGNNIESLPTSISQLSRLR  254 (369)
Q Consensus       181 ~~~L~~L~l~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~  254 (369)
                      +++|++|++++|....++    ..+..+++|+.|++++|.+.+.+  ..+..+++|++|++++|.++.+|..+.  ++|+
T Consensus       200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~  277 (312)
T 1wwl_A          200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLS  277 (312)
T ss_dssp             CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEE
T ss_pred             CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCce
Confidence            899999999999976443    23457789999999999998844  345668999999999999999998776  8999


Q ss_pred             EecccCCcccccCCC--CCcccceeccccc
Q 017542          255 WLYLVNCVKLQSLPE--LPLLLVMLGASDC  282 (369)
Q Consensus       255 ~L~l~~~~~l~~~~~--~~~~L~~L~l~~c  282 (369)
                      +|++++| .++.+|.  ..++|+.|++++.
T Consensus       278 ~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~N  306 (312)
T 1wwl_A          278 VLDLSYN-RLDRNPSPDELPQVGNLSLKGN  306 (312)
T ss_dssp             EEECCSS-CCCSCCCTTTSCEEEEEECTTC
T ss_pred             EEECCCC-CCCCChhHhhCCCCCEEeccCC
Confidence            9999999 6777665  2356777777654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.88  E-value=3.8e-22  Score=193.92  Aligned_cols=149  Identities=21%  Similarity=0.235  Sum_probs=120.1

Q ss_pred             cEEecCCCCCccccCCccC-CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcC
Q 017542           22 IKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCIN   99 (369)
Q Consensus        22 ~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   99 (369)
                      +..+.++.. +..||..++ ++++|++++|.++.++. .|.++++|++|++++|......+.+|.++++|++|++++|..
T Consensus        34 ~~~~c~~~~-l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l  112 (635)
T 4g8a_A           34 ITYQCMELN-FYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI  112 (635)
T ss_dssp             TEEECTTSC-CSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             CEEECCCCC-cCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence            355666655 889998777 99999999999999875 689999999999999876555556789999999999999876


Q ss_pred             CccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCC-CCCcccCCCcchhhhccCcccC
Q 017542          100 LESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLG-SLPESLGNLKSLERLHAGLLAI  171 (369)
Q Consensus       100 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~  171 (369)
                      ....+..+..+++|++|++++|......+..+.++++|++|++++|.... ..+..+..+++|++|++++|.+
T Consensus       113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l  185 (635)
T 4g8a_A          113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI  185 (635)
T ss_dssp             CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence            65566788999999999999887655555578999999999999976543 3456666777777777666544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.87  E-value=5.9e-21  Score=165.66  Aligned_cols=98  Identities=17%  Similarity=0.190  Sum_probs=44.5

Q ss_pred             ccEEecCCCCCccccCCccC-CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCc
Q 017542           21 SIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCI   98 (369)
Q Consensus        21 L~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~   98 (369)
                      .+.++++++. +..+|..++ ++++|+++++.++.++. .+..+++|++|++++|......+..+..+++|++|++++|.
T Consensus        18 ~~~l~~~~~~-l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~   96 (270)
T 2o6q_A           18 KNSVDCSSKK-LTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK   96 (270)
T ss_dssp             TTEEECTTSC-CSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC
T ss_pred             CCEEEccCCC-CCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc
Confidence            4455555555 555554333 55555555555554443 34555555555555543332222223444555555555443


Q ss_pred             CCccCchhhhccCccceeecc
Q 017542           99 NLESFPEILEKMELLEEINLE  119 (369)
Q Consensus        99 ~~~~~~~~~~~l~~L~~L~l~  119 (369)
                      .....+..+..+++|++|+++
T Consensus        97 l~~~~~~~~~~l~~L~~L~l~  117 (270)
T 2o6q_A           97 LQALPIGVFDQLVNLAELRLD  117 (270)
T ss_dssp             CCCCCTTTTTTCSSCCEEECC
T ss_pred             CCcCCHhHcccccCCCEEECC
Confidence            332222333333444444443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.87  E-value=6.9e-21  Score=165.24  Aligned_cols=199  Identities=20%  Similarity=0.256  Sum_probs=168.7

Q ss_pred             CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccc
Q 017542           41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE  120 (369)
Q Consensus        41 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  120 (369)
                      ..++++++++.++.+|..+.  +++++|++++|......+..+.++++|++|++++|......+..+..+++|++|++++
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            67889999999999987554  6899999999876555455788999999999999876655556678999999999998


Q ss_pred             cccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcc-cccCCCCcEEeecCCCCCCCCc
Q 017542          121 ASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSS-IVDLNKLETLSLFECRGLVLPP  199 (369)
Q Consensus       121 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~  199 (369)
                      |......+..+..+++|++|++++|......+..+..+++|++|++++|.+..++.. +..+++|++|++++|....++.
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  174 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE  174 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence            876655556778999999999999776665566688999999999999999988754 7889999999999999877775


Q ss_pred             -cccCCCCCcEEeccCCCCccCCCC-CCCCCCCCEEEccCCcCC
Q 017542          200 -LLSGLSSLKKLELGDCEIMEIPPD-IGCLSSLESLNLSGNNIE  241 (369)
Q Consensus       200 -~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~l~  241 (369)
                       .+..+++|+.|++++|.+..++.. +..+++|++|++++|.+.
T Consensus       175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence             578899999999999999987654 678899999999999875

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.87  E-value=3.7e-22  Score=187.43  Aligned_cols=212  Identities=18%  Similarity=0.161  Sum_probs=165.7

Q ss_pred             CeeEEecCCccCcccC-ccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeecc
Q 017542           41 NVVELNLMCTPIEEVP-LSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLE  119 (369)
Q Consensus        41 ~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  119 (369)
                      +|++|++++|.++.++ ..+..+++|++|++++|...+..+  +..+++|++|++++|... .++    ..++|++|+++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~----~~~~L~~L~L~  107 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELL----VGPSIETLHAA  107 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEE----ECTTCCEEECC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCC----CCCCcCEEECc
Confidence            7899999999888765 468888999999999877654443  788899999999987543 223    33889999999


Q ss_pred             ccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCC-Ccccc-cCCCCcEEeecCCCCCCC
Q 017542          120 EASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQA-PSSIV-DLNKLETLSLFECRGLVL  197 (369)
Q Consensus       120 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~l~-~~~~L~~L~l~~~~~~~~  197 (369)
                      +|......+.   .+++|+.|++++|...+..+..++.+++|+.|++++|.+... |..+. .+++|+.|++++|....+
T Consensus       108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~  184 (487)
T 3oja_A          108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV  184 (487)
T ss_dssp             SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence            7765554332   467899999988776666666778888899999999888753 44554 678899999998887666


Q ss_pred             CccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccchhhccCCcCcEecccCCcc
Q 017542          198 PPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVK  263 (369)
Q Consensus       198 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~  263 (369)
                      +. ...+++|+.|++++|.+.+++..+..+++|+.|++++|.++.+|..+..+++|+.|++++|+.
T Consensus       185 ~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l  249 (487)
T 3oja_A          185 KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGF  249 (487)
T ss_dssp             EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCB
T ss_pred             cc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCC
Confidence            54 345788999999999888877777788889999999998888888888888899999988853

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.86  E-value=1.6e-24  Score=202.75  Aligned_cols=264  Identities=20%  Similarity=0.195  Sum_probs=139.7

Q ss_pred             CCCCccEEecCCCCCccc-----cCCccC----CeeEEecCCccCc-----ccCccCCCCCCCCEEeCcCCccccccccc
Q 017542           17 HFISSIKIDCYKCVNLRE-----FPRISG----NVVELNLMCTPIE-----EVPLSIECLPNLETLEMSFCNSLKRLSTS   82 (369)
Q Consensus        17 ~~~~L~~L~l~~~~~l~~-----~~~~~~----~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~~~~~~~~   82 (369)
                      .+++|++|++++|. +.+     +...+.    +|++|++++|.++     .++..+..+++|++|++++|......+..
T Consensus        54 ~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~  132 (461)
T 1z7x_W           54 VNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQL  132 (461)
T ss_dssp             TCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHH
T ss_pred             hCCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHH
Confidence            45666666666665 322     111122    4666666666655     23445566666666666665543322221


Q ss_pred             c-----cCCCCCcEEecCCCcCCcc----CchhhhccCccceeeccccccccccchhhh-----cCCCCCeEeecCCCCC
Q 017542           83 I-----CKLKSLRSLDLSYCINLES----FPEILEKMELLEEINLEEASNIKELPSSIE-----NLEGLKQLKLTGCTKL  148 (369)
Q Consensus        83 ~-----~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~  148 (369)
                      +     ...++|++|++++|.....    ++..+..+++|++|++++|......+..+.     ..++|++|++++|...
T Consensus       133 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~  212 (461)
T 1z7x_W          133 LCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT  212 (461)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCB
T ss_pred             HHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCc
Confidence            1     1234566666666644432    234455566666666666553332222221     2446667776665433


Q ss_pred             CC----CCcccCCCcchhhhccCcccCCCC------CcccccCCCCcEEeecCCCCCC-----CCccccCCCCCcEEecc
Q 017542          149 GS----LPESLGNLKSLERLHAGLLAIPQA------PSSIVDLNKLETLSLFECRGLV-----LPPLLSGLSSLKKLELG  213 (369)
Q Consensus       149 ~~----~~~~~~~l~~L~~L~l~~~~~~~~------~~~l~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~  213 (369)
                      ..    ++..+..+++|++|++++|.+...      +..+..+++|++|++++|....     ++..+..+++|++|+++
T Consensus       213 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls  292 (461)
T 1z7x_W          213 SDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLA  292 (461)
T ss_dssp             TTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECT
T ss_pred             HHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECC
Confidence            21    233445566667777766665421      1111235667777777766443     44455556677777777


Q ss_pred             CCCCcc-----CCCCC-CCCCCCCEEEccCCcCCc-----cchhhccCCcCcEecccCCcccccCC-----C----CCcc
Q 017542          214 DCEIME-----IPPDI-GCLSSLESLNLSGNNIES-----LPTSISQLSRLRWLYLVNCVKLQSLP-----E----LPLL  273 (369)
Q Consensus       214 ~~~~~~-----~~~~~-~~~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~~~l~~~~-----~----~~~~  273 (369)
                      +|.+.+     +...+ ...++|++|++++|.++.     ++..+..+++|++|++++| .+++.+     .    ..++
T Consensus       293 ~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~  371 (461)
T 1z7x_W          293 GNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSV  371 (461)
T ss_dssp             TCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCC
T ss_pred             CCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCc
Confidence            776643     11111 123567777777776662     3445566677777777776 343321     0    1246


Q ss_pred             cceeccccc
Q 017542          274 LVMLGASDC  282 (369)
Q Consensus       274 L~~L~l~~c  282 (369)
                      |++|++++|
T Consensus       372 L~~L~L~~n  380 (461)
T 1z7x_W          372 LRVLWLADC  380 (461)
T ss_dssp             CCEEECTTS
T ss_pred             eEEEECCCC
Confidence            666666665

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=2.8e-21  Score=164.62  Aligned_cols=203  Identities=19%  Similarity=0.258  Sum_probs=109.7

Q ss_pred             ccccCCccC-CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCccccccc-ccccCCCCCcEEecCC-CcCCccCchhh
Q 017542           32 LREFPRISG-NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLS-TSICKLKSLRSLDLSY-CINLESFPEIL  107 (369)
Q Consensus        32 l~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~-~~~~~~~~~~~  107 (369)
                      ++.+|. ++ ++++|+++++.++.++. .+..+++|++|++++|...+.++ ..+.++++|++|++++ |......+..+
T Consensus        23 l~~ip~-~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f  101 (239)
T 2xwt_C           23 IQRIPS-LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL  101 (239)
T ss_dssp             CSSCCC-CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred             ccccCC-CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence            566666 43 67777777777766655 46666777777777665333333 3456666666666665 43333333445


Q ss_pred             hccCccceeeccccccccccchhhhcCCCCC---eEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCc-ccccCCC
Q 017542          108 EKMELLEEINLEEASNIKELPSSIENLEGLK---QLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPS-SIVDLNK  183 (369)
Q Consensus       108 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~---~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~l~~~~~  183 (369)
                      ..+++|++|++++|... .+|. +..+++|+   +|++++|.                       .+..++. .+..+++
T Consensus       102 ~~l~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~N~-----------------------~l~~i~~~~~~~l~~  156 (239)
T 2xwt_C          102 KELPLLKFLGIFNTGLK-MFPD-LTKVYSTDIFFILEITDNP-----------------------YMTSIPVNAFQGLCN  156 (239)
T ss_dssp             ECCTTCCEEEEEEECCC-SCCC-CTTCCBCCSEEEEEEESCT-----------------------TCCEECTTTTTTTBS
T ss_pred             CCCCCCCEEeCCCCCCc-cccc-cccccccccccEEECCCCc-----------------------chhhcCcccccchhc
Confidence            55566666666544322 2332 33344443   44444431                       3333322 2444555


Q ss_pred             Cc-EEeecCCCCCCCCccccCCCCCcEEeccCCC-CccCC-CCCCCC-CCCCEEEccCCcCCccchhhccCCcCcEeccc
Q 017542          184 LE-TLSLFECRGLVLPPLLSGLSSLKKLELGDCE-IMEIP-PDIGCL-SSLESLNLSGNNIESLPTSISQLSRLRWLYLV  259 (369)
Q Consensus       184 L~-~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~-~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~  259 (369)
                      |+ .|++++|....+|......++|+.|++++|+ +..++ ..+..+ ++|++|++++|.++.+|..  .+++|+.|+++
T Consensus       157 L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~  234 (239)
T 2xwt_C          157 ETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIAR  234 (239)
T ss_dssp             SEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECT
T ss_pred             ceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeecc
Confidence            55 5555555544444422222566666666663 55543 234555 6677777777766666543  56666666666


Q ss_pred             CCc
Q 017542          260 NCV  262 (369)
Q Consensus       260 ~~~  262 (369)
                      ++.
T Consensus       235 ~~~  237 (239)
T 2xwt_C          235 NTW  237 (239)
T ss_dssp             TC-
T ss_pred             Ccc
Confidence            553

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=2.5e-21  Score=171.54  Aligned_cols=219  Identities=16%  Similarity=0.112  Sum_probs=162.9

Q ss_pred             CeeEEecCCccCcc--cCc--cCCCCCCCCEEeCcCCcccccccccc--cCCCCCcEEecCCCcCCccCc----hhhhcc
Q 017542           41 NVVELNLMCTPIEE--VPL--SIECLPNLETLEMSFCNSLKRLSTSI--CKLKSLRSLDLSYCINLESFP----EILEKM  110 (369)
Q Consensus        41 ~L~~L~l~~~~~~~--l~~--~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~----~~~~~l  110 (369)
                      .++.+.+....++.  +..  .+..+++|++|++++|...+..|..+  ..+++|++|++++|......+    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            56777776666541  111  12234679999999988777777766  788999999999887665433    334578


Q ss_pred             CccceeeccccccccccchhhhcCCCCCeEeecCCCCCCC--C--CcccCCCcchhhhccCcccCCCCCcc----cccCC
Q 017542          111 ELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGS--L--PESLGNLKSLERLHAGLLAIPQAPSS----IVDLN  182 (369)
Q Consensus       111 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~--~~~~~~l~~L~~L~l~~~~~~~~~~~----l~~~~  182 (369)
                      ++|++|++++|......+..+..+++|++|++++|...+.  +  +..+..+++|++|++++|.++.++..    +..++
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~  224 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV  224 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence            8999999998877666667788889999999998765432  1  22246788899999999988755442    46678


Q ss_pred             CCcEEeecCCCCCCC-CccccCC---CCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccchhhccCCcCcEecc
Q 017542          183 KLETLSLFECRGLVL-PPLLSGL---SSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYL  258 (369)
Q Consensus       183 ~L~~L~l~~~~~~~~-~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l  258 (369)
                      +|++|++++|..... |..+..+   ++|++|++++|.+..+|..+.  ++|++|++++|.++.+|. +..+++|++|++
T Consensus       225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L  301 (310)
T 4glp_A          225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTL  301 (310)
T ss_dssp             CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEEC
T ss_pred             CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEEC
Confidence            999999999986655 5555555   689999999999988877653  789999999999888764 677889999999


Q ss_pred             cCCc
Q 017542          259 VNCV  262 (369)
Q Consensus       259 ~~~~  262 (369)
                      ++|+
T Consensus       302 ~~N~  305 (310)
T 4glp_A          302 DGNP  305 (310)
T ss_dssp             SSTT
T ss_pred             cCCC
Confidence            8884

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.86  E-value=2.5e-20  Score=163.26  Aligned_cols=193  Identities=22%  Similarity=0.269  Sum_probs=103.1

Q ss_pred             CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccc
Q 017542           41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE  120 (369)
Q Consensus        41 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  120 (369)
                      ++++++++++.++.+|..+.  +++++|++++|......+..+..+++|++|++++|.... ++.. ..           
T Consensus        11 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~-----------   75 (290)
T 1p9a_G           11 SHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GT-----------   75 (290)
T ss_dssp             TCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SC-----------
T ss_pred             CccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CC-----------
Confidence            44555555555555554332  455555555544433333444555555555555543222 2211 34           


Q ss_pred             cccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCC-cccccCCCCcEEeecCCCCCCCCc
Q 017542          121 ASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAP-SSIVDLNKLETLSLFECRGLVLPP  199 (369)
Q Consensus       121 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~  199 (369)
                                   +++|++|++++|. +..+|..+..+++|++|++++|.+..++ ..+..+++|++|++++|....++.
T Consensus        76 -------------l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~  141 (290)
T 1p9a_G           76 -------------LPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP  141 (290)
T ss_dssp             -------------CTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             -------------CCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccCh
Confidence                         4445555555432 3344444455555555555555555544 345556666666666666554443


Q ss_pred             -cccCCCCCcEEeccCCCCccCCCC-CCCCCCCCEEEccCCcCCccchhhccCCcCcEecccCCc
Q 017542          200 -LLSGLSSLKKLELGDCEIMEIPPD-IGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCV  262 (369)
Q Consensus       200 -~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~  262 (369)
                       .+..+++|+.|++++|++..++.. +..+++|++|++++|.++.+|..+...++|+.+++++|+
T Consensus       142 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             TTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             hhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence             345566666666666666665543 345666666666666666666666666666666666664

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=3.1e-21  Score=164.33  Aligned_cols=187  Identities=16%  Similarity=0.202  Sum_probs=127.4

Q ss_pred             CcCCccCCCCCCCCCccEEecCCCCCccccCC-ccC---CeeEEecCCcc-CcccCc-cCCCCCCCCEEeCcCCcccccc
Q 017542            6 CESLRCFPQNIHFISSIKIDCYKCVNLREFPR-ISG---NVVELNLMCTP-IEEVPL-SIECLPNLETLEMSFCNSLKRL   79 (369)
Q Consensus         6 c~~l~~~p~~~~~~~L~~L~l~~~~~l~~~~~-~~~---~L~~L~l~~~~-~~~l~~-~~~~~~~L~~L~l~~~~~~~~~   79 (369)
                      |.+++++|. + .+++++|++++|. +..++. .+.   +|++|++++|. ++.++. .+..+++|++|++++|+..+.+
T Consensus        20 c~~l~~ip~-~-~~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i   96 (239)
T 2xwt_C           20 CKDIQRIPS-L-PPSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI   96 (239)
T ss_dssp             ECSCSSCCC-C-CTTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE
T ss_pred             ccCccccCC-C-CCcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc
Confidence            667888998 3 4589999999998 777775 343   99999999997 888876 6789999999999984444444


Q ss_pred             c-ccccCCCCCcEEecCCCcCCccCchhhhccCccc---eeeccccccccccc-hhhhcCCCCC-eEeecCCCCCCCCCc
Q 017542           80 S-TSICKLKSLRSLDLSYCINLESFPEILEKMELLE---EINLEEASNIKELP-SSIENLEGLK-QLKLTGCTKLGSLPE  153 (369)
Q Consensus        80 ~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~---~L~l~~~~~~~~~~-~~~~~l~~L~-~L~l~~~~~~~~~~~  153 (369)
                      + ..+..+++|++|++++|... .+|. +..+++|+   +|++++|..+..++ ..+..+++|+ +|++++|... .++.
T Consensus        97 ~~~~f~~l~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~  173 (239)
T 2xwt_C           97 DPDALKELPLLKFLGIFNTGLK-MFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQG  173 (239)
T ss_dssp             CTTSEECCTTCCEEEEEEECCC-SCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECT
T ss_pred             CHHHhCCCCCCCEEeCCCCCCc-cccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCH
Confidence            4 57888999999999997654 4665 78888888   99999883444443 4577788888 8888775433 4443


Q ss_pred             ccCCCcchhhhccCccc-CCCCC-cccccC-CCCcEEeecCCCCCCCC
Q 017542          154 SLGNLKSLERLHAGLLA-IPQAP-SSIVDL-NKLETLSLFECRGLVLP  198 (369)
Q Consensus       154 ~~~~l~~L~~L~l~~~~-~~~~~-~~l~~~-~~L~~L~l~~~~~~~~~  198 (369)
                      .....++|++|++++|. +..++ ..+..+ ++|+.|++++|....+|
T Consensus       174 ~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~  221 (239)
T 2xwt_C          174 YAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALP  221 (239)
T ss_dssp             TTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCC
T ss_pred             hhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCC
Confidence            22222455555555552 44332 223333 44444444444433333

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.85  E-value=9.8e-23  Score=190.67  Aligned_cols=244  Identities=21%  Similarity=0.224  Sum_probs=118.9

Q ss_pred             CCCCccEEecCCCCCcc-----ccCCcc---CCeeEEecCCccCcc--cCccCCCCC----CCCEEeCcCCcccc----c
Q 017542           17 HFISSIKIDCYKCVNLR-----EFPRIS---GNVVELNLMCTPIEE--VPLSIECLP----NLETLEMSFCNSLK----R   78 (369)
Q Consensus        17 ~~~~L~~L~l~~~~~l~-----~~~~~~---~~L~~L~l~~~~~~~--l~~~~~~~~----~L~~L~l~~~~~~~----~   78 (369)
                      .+++|++|++++|. +.     .++..+   .+|++|+++++.++.  +......++    +|++|++++|....    .
T Consensus        26 ~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~  104 (461)
T 1z7x_W           26 LLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV  104 (461)
T ss_dssp             HHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             hcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHH
Confidence            45566666666665 33     122222   256666666665542  111111222    46666666655432    3


Q ss_pred             ccccccCCCCCcEEecCCCcCCccCchhhh-----ccCccceeeccccccccc----cchhhhcCCCCCeEeecCCCCCC
Q 017542           79 LSTSICKLKSLRSLDLSYCINLESFPEILE-----KMELLEEINLEEASNIKE----LPSSIENLEGLKQLKLTGCTKLG  149 (369)
Q Consensus        79 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~  149 (369)
                      ++..+..+++|++|++++|......+..+.     ..++|++|++++|.....    ++..+..+++|++|++++|....
T Consensus       105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~  184 (461)
T 1z7x_W          105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE  184 (461)
T ss_dssp             HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcch
Confidence            344555566666666666543322222111     234566666665544332    23344455666666666654221


Q ss_pred             CCCcccC-----CCcchhhhccCcccCCC-----CCcccccCCCCcEEeecCCCCCCC------CccccCCCCCcEEecc
Q 017542          150 SLPESLG-----NLKSLERLHAGLLAIPQ-----APSSIVDLNKLETLSLFECRGLVL------PPLLSGLSSLKKLELG  213 (369)
Q Consensus       150 ~~~~~~~-----~l~~L~~L~l~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~~------~~~~~~~~~L~~L~l~  213 (369)
                      .....+.     ..++|++|++++|.+..     ++..+..+++|++|++++|.....      +.....+++|++|+++
T Consensus       185 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~  264 (461)
T 1z7x_W          185 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIW  264 (461)
T ss_dssp             HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECc
Confidence            1111111     23356666666666553     234445556666666666653321      1122245566666666


Q ss_pred             CCCCcc-----CCCCCCCCCCCCEEEccCCcCCccc-hhhc-----cCCcCcEecccCC
Q 017542          214 DCEIME-----IPPDIGCLSSLESLNLSGNNIESLP-TSIS-----QLSRLRWLYLVNC  261 (369)
Q Consensus       214 ~~~~~~-----~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~-----~~~~L~~L~l~~~  261 (369)
                      +|.+..     ++..+..+++|++|++++|.+++.. ..+.     ..++|++|++++|
T Consensus       265 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n  323 (461)
T 1z7x_W          265 ECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC  323 (461)
T ss_dssp             TSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             CCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC
Confidence            666555     3333444566666666666654211 1111     1246666666666

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.85  E-value=4.2e-20  Score=161.77  Aligned_cols=197  Identities=23%  Similarity=0.247  Sum_probs=142.1

Q ss_pred             CCCCccEEecCCCCCccccCCccC-CeeEEecCCccCcccC-ccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEec
Q 017542           17 HFISSIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVP-LSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDL   94 (369)
Q Consensus        17 ~~~~L~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l   94 (369)
                      .+++++.++++++. +..+|..++ +++.|++++|.++.++ ..+..+++|++|++++|... .++. ...+++|++|++
T Consensus         8 ~l~~l~~l~~~~~~-l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~~L~L   84 (290)
T 1p9a_G            8 KVASHLEVNCDKRN-LTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDL   84 (290)
T ss_dssp             CSTTCCEEECTTSC-CSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC-CSCCTTCCEEEC
T ss_pred             ccCCccEEECCCCC-CCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccC-CCCCCcCCEEEC
Confidence            67889999999988 899987666 9999999999998764 56899999999999997654 4444 377999999999


Q ss_pred             CCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCC
Q 017542           95 SYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQA  174 (369)
Q Consensus        95 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  174 (369)
                      ++|.. ..+|..+..+++|++|++++|......+..+..+++|++|++++|.                        +..+
T Consensus        85 s~N~l-~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~------------------------l~~~  139 (290)
T 1p9a_G           85 SHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE------------------------LKTL  139 (290)
T ss_dssp             CSSCC-SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC------------------------CCCC
T ss_pred             CCCcC-CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC------------------------CCcc
Confidence            99754 4667777778888888888665544444456666666666666643                        3333


Q ss_pred             Cc-ccccCCCCcEEeecCCCCCCCCc-cccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCC
Q 017542          175 PS-SIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIE  241 (369)
Q Consensus       175 ~~-~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  241 (369)
                      +. .+..+++|+.|++++|....+|. .+..+++|+.|++++|.+..+|..+...++|+++++++|.+.
T Consensus       140 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence            22 23445666666666666555554 345667777777777777777777766777888888877654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.84  E-value=2.4e-20  Score=162.04  Aligned_cols=202  Identities=19%  Similarity=0.170  Sum_probs=118.2

Q ss_pred             CCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeE
Q 017542           61 CLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQL  140 (369)
Q Consensus        61 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  140 (369)
                      .+++|+.|++++|.. ..++ .+..+++|++|++++|.... + ..+..+++|++|++++|......+..+..+++|++|
T Consensus        39 ~l~~L~~L~l~~~~i-~~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           39 ELNSIDQIIANNSDI-KSVQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL  114 (272)
T ss_dssp             HHTTCCEEECTTSCC-CCCT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             cccceeeeeeCCCCc-cccc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence            345555555555432 2222 24445555555555543322 2 244555555555555554333333344555666666


Q ss_pred             eecCCCCCCCCCcccCCCcchhhhccCcccCCCCCc-ccccCCCCcEEeecCCCCCCCCc-cccCCCCCcEEeccCCCCc
Q 017542          141 KLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPS-SIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIM  218 (369)
Q Consensus       141 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~  218 (369)
                      ++++|......+..+..+++|++|++++|.+..++. .+..+++|+.|++++|....++. .+..+++|+.|++++|.+.
T Consensus       115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence            666654433333345566666666666666665543 34567777777777777655554 4567778888888888887


Q ss_pred             cCCCC-CCCCCCCCEEEccCCcCCccchhhccCCcCcEecccCCcccccCCCCCc
Q 017542          219 EIPPD-IGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPELPL  272 (369)
Q Consensus       219 ~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~  272 (369)
                      +++.. +..+++|++|++++|.+.      +.+++|+.++++.|..-..+|....
T Consensus       195 ~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~~~  243 (272)
T 3rfs_A          195 SVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAG  243 (272)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCTTS
T ss_pred             ccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCccc
Confidence            75443 567788888888888654      3466788888777754445554433

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.84  E-value=1.5e-20  Score=163.24  Aligned_cols=225  Identities=19%  Similarity=0.167  Sum_probs=172.9

Q ss_pred             CCCccEEecCCCCCccccCC--ccCCeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecC
Q 017542           18 FISSIKIDCYKCVNLREFPR--ISGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLS   95 (369)
Q Consensus        18 ~~~L~~L~l~~~~~l~~~~~--~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~   95 (369)
                      +..+..+++.++. +.++..  .+.+|+.|+++++.++.++. +..+++|++|++++|.... ++ .+..+++|++|+++
T Consensus        18 ~~~l~~l~l~~~~-~~~~~~~~~l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~   93 (272)
T 3rfs_A           18 FAETIKANLKKKS-VTDAVTQNELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHD-IS-ALKELTNLTYLILT   93 (272)
T ss_dssp             HHHHHHHHHTCSC-TTSEECHHHHTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECT
T ss_pred             HHHHHHHHhcCcc-cccccccccccceeeeeeCCCCcccccc-cccCCCCcEEECCCCCCCC-ch-hhcCCCCCCEEECC
Confidence            3445556666655 333332  23388999998888887764 7788999999999976543 33 57888999999999


Q ss_pred             CCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCC
Q 017542           96 YCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAP  175 (369)
Q Consensus        96 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  175 (369)
                      +|......+..+..+++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++++|.+..++
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  173 (272)
T 3rfs_A           94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP  173 (272)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence            98766666666788999999999988766555566788999999999997655444455688999999999999988776


Q ss_pred             cc-cccCCCCcEEeecCCCCCCCCc-cccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCC-ccchhhccCCc
Q 017542          176 SS-IVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIE-SLPTSISQLSR  252 (369)
Q Consensus       176 ~~-l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~  252 (369)
                      .. +..+++|+.|++++|....++. .+..+++|+.|++++|.+.      ..+++|+.++++.|.++ .+|..++.++.
T Consensus       174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence            54 5788999999999999776664 5788999999999999755      34678999999999887 77777665544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.84  E-value=2.5e-22  Score=183.55  Aligned_cols=222  Identities=21%  Similarity=0.194  Sum_probs=146.5

Q ss_pred             CeeEEecCCccCcc-----cCccCCCCCCCCEEeCcCCcc---ccccccc-------ccCCCCCcEEecCCCcCCc----
Q 017542           41 NVVELNLMCTPIEE-----VPLSIECLPNLETLEMSFCNS---LKRLSTS-------ICKLKSLRSLDLSYCINLE----  101 (369)
Q Consensus        41 ~L~~L~l~~~~~~~-----l~~~~~~~~~L~~L~l~~~~~---~~~~~~~-------~~~~~~L~~L~l~~~~~~~----  101 (369)
                      +|++|+++++.++.     +...+..+++|++|++++|..   ...+|..       +..+++|++|++++|....    
T Consensus        33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  112 (386)
T 2ca6_A           33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE  112 (386)
T ss_dssp             CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred             CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHH
Confidence            67777777776652     333466777788888777532   1233332       3567788888888776554    


Q ss_pred             cCchhhhccCccceeeccccccccc----cchhhhcC---------CCCCeEeecCCCCC-CCCC---cccCCCcchhhh
Q 017542          102 SFPEILEKMELLEEINLEEASNIKE----LPSSIENL---------EGLKQLKLTGCTKL-GSLP---ESLGNLKSLERL  164 (369)
Q Consensus       102 ~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l---------~~L~~L~l~~~~~~-~~~~---~~~~~l~~L~~L  164 (369)
                      .++..+..+++|++|++++|.....    ++..+..+         ++|++|++++|... ..++   ..+..+++|++|
T Consensus       113 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L  192 (386)
T 2ca6_A          113 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV  192 (386)
T ss_dssp             HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEE
T ss_pred             HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEE
Confidence            3556677778888888877665432    22233333         77888888776543 2222   234566677777


Q ss_pred             ccCcccCC------CCCcccccCCCCcEEeecCCCC-----CCCCccccCCCCCcEEeccCCCCccC-----CCCC--CC
Q 017542          165 HAGLLAIP------QAPSSIVDLNKLETLSLFECRG-----LVLPPLLSGLSSLKKLELGDCEIMEI-----PPDI--GC  226 (369)
Q Consensus       165 ~l~~~~~~------~~~~~l~~~~~L~~L~l~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~--~~  226 (369)
                      ++++|.+.      -.+..+..+++|+.|++++|..     ..++..+..+++|+.|++++|.+...     +..+  ..
T Consensus       193 ~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~  272 (386)
T 2ca6_A          193 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE  272 (386)
T ss_dssp             ECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCS
T ss_pred             ECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhcc
Confidence            77777766      1223666778888888888875     44566677788888888888887652     3333  33


Q ss_pred             CCCCCEEEccCCcCCc-----cchhh-ccCCcCcEecccCCc
Q 017542          227 LSSLESLNLSGNNIES-----LPTSI-SQLSRLRWLYLVNCV  262 (369)
Q Consensus       227 ~~~L~~L~l~~~~l~~-----~~~~~-~~~~~L~~L~l~~~~  262 (369)
                      +++|++|++++|.++.     ++..+ ..+++|++|++++|.
T Consensus       273 ~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence            7788888888888876     77666 557888888888883

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=6.6e-20  Score=162.07  Aligned_cols=186  Identities=26%  Similarity=0.342  Sum_probs=100.8

Q ss_pred             CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccc
Q 017542           41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE  120 (369)
Q Consensus        41 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  120 (369)
                      +|++|+++++.++.++ .+..+++|++|++++|... .++. +..+++|++|++++|... .++                
T Consensus        42 ~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~-~~~~-~~~l~~L~~L~L~~n~l~-~~~----------------  101 (308)
T 1h6u_A           42 GITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLK-NVS----------------  101 (308)
T ss_dssp             TCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCCSCCEEECCSCCCS-CCG----------------
T ss_pred             CcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCC-CChh-HccCCCCCEEEccCCcCC-Cch----------------
Confidence            5555555555555444 2444555555555554322 2222 444555555555554322 222                


Q ss_pred             cccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCcc
Q 017542          121 ASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPL  200 (369)
Q Consensus       121 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  200 (369)
                               .+..+++|++|++++|.. ..++. +..+++|++|++++|.+..++. +..+++|+.|++++|....++. 
T Consensus       102 ---------~~~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-  168 (308)
T 1h6u_A          102 ---------AIAGLQSIKTLDLTSTQI-TDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-  168 (308)
T ss_dssp             ---------GGTTCTTCCEEECTTSCC-CCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-
T ss_pred             ---------hhcCCCCCCEEECCCCCC-CCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-
Confidence                     244444555555555332 22222 4555555555555555554433 5556666666666666555554 


Q ss_pred             ccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccchhhccCCcCcEecccCC
Q 017542          201 LSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNC  261 (369)
Q Consensus       201 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~  261 (369)
                      +..+++|+.|++++|.+.+++. +..+++|++|++++|.++.++. +..+++|++|++++|
T Consensus       169 l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N  227 (308)
T 1h6u_A          169 LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQ  227 (308)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEE
T ss_pred             hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCC
Confidence            5666667777777776666543 5566677777777777666653 566677777777766

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=5.8e-20  Score=162.42  Aligned_cols=191  Identities=20%  Similarity=0.265  Sum_probs=132.0

Q ss_pred             CCCCccEEecCCCCCccccCCcc--CCeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEec
Q 017542           17 HFISSIKIDCYKCVNLREFPRIS--GNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDL   94 (369)
Q Consensus        17 ~~~~L~~L~l~~~~~l~~~~~~~--~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l   94 (369)
                      .+++|++|++++|. +..++...  .+|++|++++|.++.++. +..+++|++|++++|... .++ .+..+++|++|++
T Consensus        39 ~l~~L~~L~l~~~~-i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~l  114 (308)
T 1h6u_A           39 DLDGITTLSAFGTG-VTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDL  114 (308)
T ss_dssp             HHHTCCEEECTTSC-CCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEEC
T ss_pred             HcCCcCEEEeeCCC-ccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCC-Cch-hhcCCCCCCEEEC
Confidence            68899999999998 78887543  399999999999998887 899999999999998744 444 4888999999999


Q ss_pred             CCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCC
Q 017542           95 SYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQA  174 (369)
Q Consensus        95 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  174 (369)
                      ++|.... ++. +..+++|++|++++|.... ++. +..+++|++|++++|. +..++. +..+++|++|++++|.+..+
T Consensus       115 ~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~  188 (308)
T 1h6u_A          115 TSTQITD-VTP-LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQ-VSDLTP-LANLSKLTTLKADDNKISDI  188 (308)
T ss_dssp             TTSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCCC
T ss_pred             CCCCCCC-chh-hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCc-CCCChh-hcCCCCCCEEECCCCccCcC
Confidence            9986544 443 7888999999998775433 333 6677788888887754 333333 55555666666666655544


Q ss_pred             CcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCcc
Q 017542          175 PSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIME  219 (369)
Q Consensus       175 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  219 (369)
                      +. +..+++|++|++++|....++. +..+++|+.|++++|.+..
T Consensus       189 ~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          189 SP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             GG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEEC
T ss_pred             hh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeec
Confidence            33 4445555555555555444432 4444555555555554443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.83  E-value=1.4e-21  Score=175.08  Aligned_cols=219  Identities=15%  Similarity=0.132  Sum_probs=137.7

Q ss_pred             CccEEecCCCCCccccCCcc--CCeeEEecCCccCcccCccCCCCCCCCEEeCcCCccccc-ccccccCCCCCcEEecCC
Q 017542           20 SSIKIDCYKCVNLREFPRIS--GNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKR-LSTSICKLKSLRSLDLSY   96 (369)
Q Consensus        20 ~L~~L~l~~~~~l~~~~~~~--~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~   96 (369)
                      .++.++++++..........  ..++.|+++++.+...+..+..+++|++|++++|..... ++..+..+++|++|++++
T Consensus        48 ~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~  127 (336)
T 2ast_B           48 LWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG  127 (336)
T ss_dssp             TSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             hheeeccccccCCHHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcC
Confidence            36677777765222111122  377788887777776555566778888888888765443 566667778888888888


Q ss_pred             CcCCccCchhhhccCccceeecccccccc--ccchhhhcCCCCCeEeecCCCCCCC--CCcccCCCc-chhhhccCccc-
Q 017542           97 CINLESFPEILEKMELLEEINLEEASNIK--ELPSSIENLEGLKQLKLTGCTKLGS--LPESLGNLK-SLERLHAGLLA-  170 (369)
Q Consensus        97 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~-~L~~L~l~~~~-  170 (369)
                      |......+..+..+++|++|++++|..++  .++..+..+++|++|++++|..++.  ++..+..++ +|++|++++|. 
T Consensus       128 ~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~  207 (336)
T 2ast_B          128 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK  207 (336)
T ss_dssp             CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred             cccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcc
Confidence            76555566677778888888888774444  3555667778888888887733332  344455666 77777777763 


Q ss_pred             -CC--CCCcccccCCCCcEEeecCCC-C-CCCCccccCCCCCcEEeccCCC-Ccc-CCCCCCCCCCCCEEEccCC
Q 017542          171 -IP--QAPSSIVDLNKLETLSLFECR-G-LVLPPLLSGLSSLKKLELGDCE-IME-IPPDIGCLSSLESLNLSGN  238 (369)
Q Consensus       171 -~~--~~~~~l~~~~~L~~L~l~~~~-~-~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~~L~~L~l~~~  238 (369)
                       ++  .++..+..+++|++|++++|. . ...+..+..+++|+.|++++|. +.. ....+..+++|++|++++|
T Consensus       208 ~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          208 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence             32  334455566777777777766 2 2334455666777777777664 211 1123455667777777766

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.83  E-value=8e-20  Score=164.58  Aligned_cols=236  Identities=18%  Similarity=0.197  Sum_probs=176.2

Q ss_pred             cEEecCCCCCccccCCccC-CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcccccccc-cccCCCCCcEEec-CCC
Q 017542           22 IKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLST-SICKLKSLRSLDL-SYC   97 (369)
Q Consensus        22 ~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l-~~~   97 (369)
                      +.++.+++. +.++|..++ ++++|++++|.++.+|. .|.++++|++|+|++|...+.++. .|.++++++++.. +.|
T Consensus        12 ~~v~C~~~~-Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N   90 (350)
T 4ay9_X           12 RVFLCQESK-VTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   90 (350)
T ss_dssp             TEEEEESTT-CCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred             CEEEecCCC-CCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence            567888777 899997665 99999999999999986 588999999999999887776664 5778888887554 444


Q ss_pred             cCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCc-ccCCC-cchhhhccCcccCCCCC
Q 017542           98 INLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPE-SLGNL-KSLERLHAGLLAIPQAP  175 (369)
Q Consensus        98 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l-~~L~~L~l~~~~~~~~~  175 (369)
                      ......+..+..+++|++|++++|......+..+....++..+++.++..+..++. .+..+ ..++.|++++|.+..++
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~  170 (350)
T 4ay9_X           91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH  170 (350)
T ss_dssp             TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC
T ss_pred             cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC
Confidence            44444567889999999999998776554445556667888888887766665553 34444 35778888888888777


Q ss_pred             cccccCCCCcEEeecC-CCCCCCCc-cccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCC-cCCccchhhccCCc
Q 017542          176 SSIVDLNKLETLSLFE-CRGLVLPP-LLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGN-NIESLPTSISQLSR  252 (369)
Q Consensus       176 ~~l~~~~~L~~L~l~~-~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~  252 (369)
                      .......+|+++.+.+ |....+|. .+..+++|+.|++++|++..+|..  .+.+|+.|.+.++ .++.+| .+..+++
T Consensus       171 ~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP-~l~~l~~  247 (350)
T 4ay9_X          171 NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLP-TLEKLVA  247 (350)
T ss_dssp             TTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCC-CTTTCCS
T ss_pred             hhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCC-CchhCcC
Confidence            7666667788888875 44667764 567788888888888888877653  3557777776664 566777 3677788


Q ss_pred             CcEecccCC
Q 017542          253 LRWLYLVNC  261 (369)
Q Consensus       253 L~~L~l~~~  261 (369)
                      |+.+++.++
T Consensus       248 L~~l~l~~~  256 (350)
T 4ay9_X          248 LMEASLTYP  256 (350)
T ss_dssp             CCEEECSCH
T ss_pred             hhhCcCCCC
Confidence            888877643

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.83  E-value=1.9e-20  Score=165.88  Aligned_cols=221  Identities=15%  Similarity=0.116  Sum_probs=173.4

Q ss_pred             CCCCccEEecCCCCCccc-----cCCcc--CCeeEEecCCccCc-ccCccC--CCCCCCCEEeCcCCccccccc----cc
Q 017542           17 HFISSIKIDCYKCVNLRE-----FPRIS--GNVVELNLMCTPIE-EVPLSI--ECLPNLETLEMSFCNSLKRLS----TS   82 (369)
Q Consensus        17 ~~~~L~~L~l~~~~~l~~-----~~~~~--~~L~~L~l~~~~~~-~l~~~~--~~~~~L~~L~l~~~~~~~~~~----~~   82 (369)
                      ....++.+.+.++. +..     +....  .+|++|+++++.+. ..|..+  ..+++|++|++++|......+    ..
T Consensus        62 ~~~~l~~l~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~  140 (310)
T 4glp_A           62 KALRVRRLTVGAAQ-VPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ  140 (310)
T ss_dssp             SSCCCCEEEECSCC-CBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred             hhcceeEEEEeCCc-CCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH
Confidence            33457788888776 322     11221  27999999999987 455555  889999999999988765433    23


Q ss_pred             ccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccc--cc--hhhhcCCCCCeEeecCCCCCCCCCc----c
Q 017542           83 ICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKE--LP--SSIENLEGLKQLKLTGCTKLGSLPE----S  154 (369)
Q Consensus        83 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~--~~~~~l~~L~~L~l~~~~~~~~~~~----~  154 (369)
                      +..+++|++|++++|......+..++.+++|++|++++|+..+.  ++  ..+..+++|++|++++|.. +.++.    .
T Consensus       141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l  219 (310)
T 4glp_A          141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAAL  219 (310)
T ss_dssp             TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHH
T ss_pred             hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHH
Confidence            45689999999999988777778899999999999998876542  22  2346889999999999754 43333    2


Q ss_pred             cCCCcchhhhccCcccCCCC-CcccccC---CCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCC
Q 017542          155 LGNLKSLERLHAGLLAIPQA-PSSIVDL---NKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSL  230 (369)
Q Consensus       155 ~~~l~~L~~L~l~~~~~~~~-~~~l~~~---~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L  230 (369)
                      +..+++|++|++++|.+... |..+..+   ++|++|++++|....+|..+.  ++|+.|++++|.+.+++. +..+++|
T Consensus       220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L  296 (310)
T 4glp_A          220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEV  296 (310)
T ss_dssp             HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCC
T ss_pred             HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCc
Confidence            46779999999999999876 6666665   699999999999888887664  799999999999998765 6788999


Q ss_pred             CEEEccCCcCCc
Q 017542          231 ESLNLSGNNIES  242 (369)
Q Consensus       231 ~~L~l~~~~l~~  242 (369)
                      ++|++++|.+++
T Consensus       297 ~~L~L~~N~l~~  308 (310)
T 4glp_A          297 DNLTLDGNPFLV  308 (310)
T ss_dssp             SCEECSSTTTSC
T ss_pred             cEEECcCCCCCC
Confidence            999999998763

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.82  E-value=5.6e-22  Score=177.74  Aligned_cols=218  Identities=18%  Similarity=0.215  Sum_probs=167.1

Q ss_pred             CeeEEecCCccCcccCccCCCC--CCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCcc-CchhhhccCccceee
Q 017542           41 NVVELNLMCTPIEEVPLSIECL--PNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLES-FPEILEKMELLEEIN  117 (369)
Q Consensus        41 ~L~~L~l~~~~~~~l~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~  117 (369)
                      .++.++++++.+.  +..+..+  +++++|++++|...+..+. +..+++|++|++++|..... ++..+..+++|++|+
T Consensus        48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            5788999887776  2334445  7899999999766555444 56789999999999875544 777888999999999


Q ss_pred             ccccccccccchhhhcCCCCCeEeecCCCCCCC--CCcccCCCcchhhhccCcc-cCCC--CCcccccCC-CCcEEeecC
Q 017542          118 LEEASNIKELPSSIENLEGLKQLKLTGCTKLGS--LPESLGNLKSLERLHAGLL-AIPQ--APSSIVDLN-KLETLSLFE  191 (369)
Q Consensus       118 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~-~~~~--~~~~l~~~~-~L~~L~l~~  191 (369)
                      +++|......+..+..+++|++|++++|..++.  ++..+..+++|++|++++| .++.  ++..+..++ +|++|++++
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~  204 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG  204 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred             CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence            998876666777888899999999999855542  4555677889999999998 7763  456677788 999999998


Q ss_pred             CCC----CCCCccccCCCCCcEEeccCCC-Ccc-CCCCCCCCCCCCEEEccCCc-CC-ccchhhccCCcCcEecccCC
Q 017542          192 CRG----LVLPPLLSGLSSLKKLELGDCE-IME-IPPDIGCLSSLESLNLSGNN-IE-SLPTSISQLSRLRWLYLVNC  261 (369)
Q Consensus       192 ~~~----~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~~L~~L~l~~~~-l~-~~~~~~~~~~~L~~L~l~~~  261 (369)
                      |..    ..++..+..+++|+.|++++|. +.+ .+..+..+++|++|++++|. +. .....++.+++|++|++++|
T Consensus       205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            842    3455666778899999999998 443 45567778899999999984 33 11235677899999999988

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.81  E-value=9.4e-22  Score=179.74  Aligned_cols=241  Identities=17%  Similarity=0.122  Sum_probs=182.6

Q ss_pred             eeEEecCCccCcccCccCCCCCCCCEEeCcCCccccc----ccccccCCCCCcEEecCCCcCC---ccCchh-------h
Q 017542           42 VVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKR----LSTSICKLKSLRSLDLSYCINL---ESFPEI-------L  107 (369)
Q Consensus        42 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~---~~~~~~-------~  107 (369)
                      |+...++...+..+...+..+++|++|++++|.....    ++..+..+++|++|++++|...   ..+|..       +
T Consensus        11 L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l   90 (386)
T 2ca6_A           11 LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQAL   90 (386)
T ss_dssp             CEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHH
T ss_pred             cccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHH
Confidence            3344445555556777778889999999999876654    3344678999999999997332   234443       3


Q ss_pred             hccCccceeecccccccc----ccchhhhcCCCCCeEeecCCCCCCC----CCcccCCC---------cchhhhccCccc
Q 017542          108 EKMELLEEINLEEASNIK----ELPSSIENLEGLKQLKLTGCTKLGS----LPESLGNL---------KSLERLHAGLLA  170 (369)
Q Consensus       108 ~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l---------~~L~~L~l~~~~  170 (369)
                      ..+++|++|++++|....    .++..+..+++|++|++++|.....    ++..+..+         ++|++|++++|.
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            689999999999887665    3677888999999999999865322    22223334         899999999999


Q ss_pred             CC--CCC---cccccCCCCcEEeecCCCCC------CCCccccCCCCCcEEeccCCCCc-----cCCCCCCCCCCCCEEE
Q 017542          171 IP--QAP---SSIVDLNKLETLSLFECRGL------VLPPLLSGLSSLKKLELGDCEIM-----EIPPDIGCLSSLESLN  234 (369)
Q Consensus       171 ~~--~~~---~~l~~~~~L~~L~l~~~~~~------~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~  234 (369)
                      +.  .++   ..+..+++|++|++++|...      ..+..+..+++|+.|++++|.+.     .++..+..+++|++|+
T Consensus       171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~  250 (386)
T 2ca6_A          171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG  250 (386)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence            86  333   35667899999999999865      23336788999999999999994     3666678889999999


Q ss_pred             ccCCcCCc-----cchhhc--cCCcCcEecccCCccccc-----CCCC----Ccccceecccccc
Q 017542          235 LSGNNIES-----LPTSIS--QLSRLRWLYLVNCVKLQS-----LPEL----PLLLVMLGASDCK  283 (369)
Q Consensus       235 l~~~~l~~-----~~~~~~--~~~~L~~L~l~~~~~l~~-----~~~~----~~~L~~L~l~~c~  283 (369)
                      +++|.++.     ++..+.  .+++|++|++++| .++.     ++..    .++|++|++.+|+
T Consensus       251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence            99999984     456663  4899999999999 4554     5542    4789999998875

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.81  E-value=3.4e-21  Score=174.36  Aligned_cols=239  Identities=13%  Similarity=0.072  Sum_probs=137.1

Q ss_pred             EecCCCCCccccCCccC---CeeEEecCCccCcccC-----ccCCCCC-CCCEEeCcCCcccccccccccCC-----CCC
Q 017542           24 IDCYKCVNLREFPRISG---NVVELNLMCTPIEEVP-----LSIECLP-NLETLEMSFCNSLKRLSTSICKL-----KSL   89 (369)
Q Consensus        24 L~l~~~~~l~~~~~~~~---~L~~L~l~~~~~~~l~-----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~-----~~L   89 (369)
                      .+++.+.....+|++..   +|++|++++|.++..+     ..+..++ +|++|++++|......+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            45666653334454433   5777777777776554     3455666 77777777776555444444443     777


Q ss_pred             cEEecCCCcCCccCchh----hhcc-Cccceeeccccccccccchhh----hc-CCCCCeEeecCCCCCCCC----Cccc
Q 017542           90 RSLDLSYCINLESFPEI----LEKM-ELLEEINLEEASNIKELPSSI----EN-LEGLKQLKLTGCTKLGSL----PESL  155 (369)
Q Consensus        90 ~~L~l~~~~~~~~~~~~----~~~l-~~L~~L~l~~~~~~~~~~~~~----~~-l~~L~~L~l~~~~~~~~~----~~~~  155 (369)
                      ++|++++|......+..    +..+ ++|++|++++|......+..+    .. .++|++|++++|......    +..+
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            77777777655444443    3333 677777777766544333332    23 357777777776543221    2223


Q ss_pred             CCCc-chhhhccCcccCCCCCc-----ccccC-CCCcEEeecCCCCCC-----CCccccC-CCCCcEEeccCCCCccCC-
Q 017542          156 GNLK-SLERLHAGLLAIPQAPS-----SIVDL-NKLETLSLFECRGLV-----LPPLLSG-LSSLKKLELGDCEIMEIP-  221 (369)
Q Consensus       156 ~~l~-~L~~L~l~~~~~~~~~~-----~l~~~-~~L~~L~l~~~~~~~-----~~~~~~~-~~~L~~L~l~~~~~~~~~-  221 (369)
                      ...+ +|++|++++|.+.....     .+..+ ++|++|++++|....     ++..+.. .++|++|++++|.+.+.+ 
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  242 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL  242 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence            3333 67777777776654321     23333 477777777777444     3333333 346777777777766532 


Q ss_pred             ----CCCCCCCCCCEEEccCCcCCc--------cchhhccCCcCcEecccCCc
Q 017542          222 ----PDIGCLSSLESLNLSGNNIES--------LPTSISQLSRLRWLYLVNCV  262 (369)
Q Consensus       222 ----~~~~~~~~L~~L~l~~~~l~~--------~~~~~~~~~~L~~L~l~~~~  262 (369)
                          ..+..+++|++|++++|.+..        ++..+..+++|++|++++|.
T Consensus       243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence                224556677777777776332        22334556667777777763

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.80  E-value=1.5e-18  Score=148.80  Aligned_cols=63  Identities=25%  Similarity=0.422  Sum_probs=38.6

Q ss_pred             ccCCCCcEEeecCCCCCCCCc-cccCCCCCcEEeccCCCCccCCC-CCCCCCCCCEEEccCCcCC
Q 017542          179 VDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIMEIPP-DIGCLSSLESLNLSGNNIE  241 (369)
Q Consensus       179 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~  241 (369)
                      ..+++|+.|++++|....++. .+..+++|+.|++++|.+..++. .+..+++|++|++++|.++
T Consensus       128 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          128 DRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             ccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence            445555566666555544443 45566666666666666666443 4556677777777777665

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.79  E-value=5.2e-22  Score=191.54  Aligned_cols=176  Identities=12%  Similarity=0.032  Sum_probs=104.2

Q ss_pred             CCCCccEEecCCCCCccccC----CccC-CeeEEecCCcc-Cc--ccCccCCCCCCCCEEeCcCCccccc----cccccc
Q 017542           17 HFISSIKIDCYKCVNLREFP----RISG-NVVELNLMCTP-IE--EVPLSIECLPNLETLEMSFCNSLKR----LSTSIC   84 (369)
Q Consensus        17 ~~~~L~~L~l~~~~~l~~~~----~~~~-~L~~L~l~~~~-~~--~l~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~   84 (369)
                      .+++|++|++++|......+    ..++ +|++|+++++. ++  .++.....+++|++|++++|...+.    ++....
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            46778888888875222222    2223 48888885544 32  2333345678888888888865433    333445


Q ss_pred             CCCCCcEEecCCCcCC----ccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCC---CCCCcccCC
Q 017542           85 KLKSLRSLDLSYCINL----ESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKL---GSLPESLGN  157 (369)
Q Consensus        85 ~~~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~~~~~~~~~  157 (369)
                      .+++|++|++++|...    ..++..+..+++|++|++++|.. ..++..+..+++|++|+++.+...   ......+..
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  268 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI-LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF  268 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG-GGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH-HHHHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence            6788888888887654    23455667788888888887653 345666777788888887643222   112223344


Q ss_pred             CcchhhhccCcccCCCCCcccccCCCCcEEeecCCC
Q 017542          158 LKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECR  193 (369)
Q Consensus       158 l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~  193 (369)
                      +++|+.+++.++....++..+..+++|++|++++|.
T Consensus       269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~  304 (592)
T 3ogk_B          269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL  304 (592)
T ss_dssp             CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC
T ss_pred             cccccccCccccchhHHHHHHhhcCCCcEEecCCCc
Confidence            455555555444333444444445555555555554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.79  E-value=2.5e-18  Score=147.36  Aligned_cols=175  Identities=17%  Similarity=0.188  Sum_probs=98.6

Q ss_pred             CccEEecCCCCCccccCCccC-CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCC
Q 017542           20 SSIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYC   97 (369)
Q Consensus        20 ~L~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~   97 (369)
                      ..++++++++. +..+|..++ .+++|+++++.++.++. .+..+++|++|++++|......+..+..+++|++|++++|
T Consensus        15 ~~~~l~~~~~~-l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n   93 (251)
T 3m19_A           15 GKKEVDCQGKS-LDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN   93 (251)
T ss_dssp             GGTEEECTTCC-CSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CCeEEecCCCC-ccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence            35566666665 666665444 66666666666665443 4556666666666665544444444555666666666665


Q ss_pred             cCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCc-
Q 017542           98 INLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPS-  176 (369)
Q Consensus        98 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-  176 (369)
                      ......+..+..+++|++|++++|......+..                        +..+++|++|++++|.+..++. 
T Consensus        94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~------------------------~~~l~~L~~L~Ls~N~l~~~~~~  149 (251)
T 3m19_A           94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGV------------------------FDRLTKLKELRLNTNQLQSIPAG  149 (251)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT------------------------TTTCTTCCEEECCSSCCCCCCTT
T ss_pred             cccccChhHhcccCCCCEEEcCCCcCCCcChhH------------------------hccCCcccEEECcCCcCCccCHH
Confidence            544434444555555555555544333222223                        3444555555555555554443 


Q ss_pred             ccccCCCCcEEeecCCCCCCCCc-cccCCCCCcEEeccCCCCcc
Q 017542          177 SIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIME  219 (369)
Q Consensus       177 ~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~  219 (369)
                      .+..+++|++|++++|....++. .+..+++|+.|++++|++..
T Consensus       150 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          150 AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             HcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence            35556666666666666555543 45666777777777776543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.78  E-value=2.5e-18  Score=154.76  Aligned_cols=233  Identities=21%  Similarity=0.199  Sum_probs=164.8

Q ss_pred             eEEecCCccCcccCccCCCCCCCCEEeCcCCccccccc-ccccCCCCCcEEecCCCcCCccCc-hhhhccCccceeeccc
Q 017542           43 VELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLS-TSICKLKSLRSLDLSYCINLESFP-EILEKMELLEEINLEE  120 (369)
Q Consensus        43 ~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~  120 (369)
                      ++++.++++++++|..+  .+++++|++++|.. +.++ ..|.++++|++|++++|...+.++ ..+.++++++++...+
T Consensus        12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i-~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKL-RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCCSCCTTC--CTTCSEEEEESCCC-SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCCccCcCc--CCCCCEEEccCCcC-CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            45677788889998765  36899999999754 4555 468889999999999987766555 4678888888755544


Q ss_pred             ccccc-ccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCc-ccCCCCCc-ccccC-CCCcEEeecCCCCCC
Q 017542          121 ASNIK-ELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGL-LAIPQAPS-SIVDL-NKLETLSLFECRGLV  196 (369)
Q Consensus       121 ~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~-~l~~~-~~L~~L~l~~~~~~~  196 (369)
                      +..+. ..+.++..+++|++|++++|......+..+....++..+++.+ +.+..++. .+..+ ..++.|++++|....
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~  168 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  168 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence            44444 4466788899999999998665443333444555666777654 45555443 33443 468888999888888


Q ss_pred             CCccccCCCCCcEEeccC-CCCccCCCC-CCCCCCCCEEEccCCcCCccchhhccCCcCcEecccCCcccccCCCC--Cc
Q 017542          197 LPPLLSGLSSLKKLELGD-CEIMEIPPD-IGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPEL--PL  272 (369)
Q Consensus       197 ~~~~~~~~~~L~~L~l~~-~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~  272 (369)
                      ++.......+|+++.+.+ |.+..++.. +..+++|++|++++|+++.+|..  .+.+|++|.+.++..++.+|..  ++
T Consensus       169 i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~  246 (350)
T 4ay9_X          169 IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPTLEKLV  246 (350)
T ss_dssp             ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCCTTTCC
T ss_pred             CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCCchhCc
Confidence            877655667788888874 566667654 57788899999999988888753  4667788877777777777752  34


Q ss_pred             ccceeccc
Q 017542          273 LLVMLGAS  280 (369)
Q Consensus       273 ~L~~L~l~  280 (369)
                      +|+.+++.
T Consensus       247 ~L~~l~l~  254 (350)
T 4ay9_X          247 ALMEASLT  254 (350)
T ss_dssp             SCCEEECS
T ss_pred             ChhhCcCC
Confidence            55555543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.78  E-value=6.6e-22  Score=190.84  Aligned_cols=148  Identities=16%  Similarity=0.073  Sum_probs=72.9

Q ss_pred             ccEEecCCCCCccc--cC---CccCCeeEEecCCccCcc-----cCccCCCCCCCCEEeCcCCccc----ccccccccCC
Q 017542           21 SIKIDCYKCVNLRE--FP---RISGNVVELNLMCTPIEE-----VPLSIECLPNLETLEMSFCNSL----KRLSTSICKL   86 (369)
Q Consensus        21 L~~L~l~~~~~l~~--~~---~~~~~L~~L~l~~~~~~~-----l~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~   86 (369)
                      |++|++++|.....  ++   ...++|++|+++++.++.     ++.....+++|++|++++|...    ..++..+.++
T Consensus       140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~  219 (592)
T 3ogk_B          140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC  219 (592)
T ss_dssp             CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred             CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence            77777766652211  11   123467777776665542     2222345666777777665543    2333444556


Q ss_pred             CCCcEEecCCCcCCccCchhhhccCccceeeccccccc---cccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhh
Q 017542           87 KSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNI---KELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLER  163 (369)
Q Consensus        87 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  163 (369)
                      ++|+.|++++|... .++..+..+++|++|+++++...   ......+..+++|+.+.++++ ....++..+..+++|++
T Consensus       220 ~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~  297 (592)
T 3ogk_B          220 RSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRK  297 (592)
T ss_dssp             TTCCEEECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCE
T ss_pred             CCCcEEeccCccHH-HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcE
Confidence            67777777665433 35555666666666666532221   112223334444555444442 22233333344444555


Q ss_pred             hccCccc
Q 017542          164 LHAGLLA  170 (369)
Q Consensus       164 L~l~~~~  170 (369)
                      |++++|.
T Consensus       298 L~Ls~~~  304 (592)
T 3ogk_B          298 LDLLYAL  304 (592)
T ss_dssp             EEETTCC
T ss_pred             EecCCCc
Confidence            5544444

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.77  E-value=5.6e-20  Score=166.42  Aligned_cols=240  Identities=15%  Similarity=0.079  Sum_probs=172.9

Q ss_pred             EEecCCccCc-ccCccCCCCCCCCEEeCcCCccccccc----ccccCCC-CCcEEecCCCcCCccCchhhhcc-----Cc
Q 017542           44 ELNLMCTPIE-EVPLSIECLPNLETLEMSFCNSLKRLS----TSICKLK-SLRSLDLSYCINLESFPEILEKM-----EL  112 (369)
Q Consensus        44 ~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l-----~~  112 (369)
                      .+.++.+.++ .+|..+...++|++|++++|......+    ..+..++ +|++|++++|......+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            4567888887 445545556679999999987655444    5677788 99999999997776666666664     99


Q ss_pred             cceeeccccccccccchh----hhcC-CCCCeEeecCCCCCCCCCcc----cCC-CcchhhhccCcccCCCC-----Ccc
Q 017542          113 LEEINLEEASNIKELPSS----IENL-EGLKQLKLTGCTKLGSLPES----LGN-LKSLERLHAGLLAIPQA-----PSS  177 (369)
Q Consensus       113 L~~L~l~~~~~~~~~~~~----~~~l-~~L~~L~l~~~~~~~~~~~~----~~~-l~~L~~L~l~~~~~~~~-----~~~  177 (369)
                      |++|++++|......+..    +..+ ++|++|++++|......+..    +.. .++|++|++++|.+...     +..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            999999988866554443    4444 89999999997754433322    344 36899999999998732     333


Q ss_pred             cccCC-CCcEEeecCCCCCCCCc-----cccCC-CCCcEEeccCCCCcc-----CCCCCCC-CCCCCEEEccCCcCCccc
Q 017542          178 IVDLN-KLETLSLFECRGLVLPP-----LLSGL-SSLKKLELGDCEIME-----IPPDIGC-LSSLESLNLSGNNIESLP  244 (369)
Q Consensus       178 l~~~~-~L~~L~l~~~~~~~~~~-----~~~~~-~~L~~L~l~~~~~~~-----~~~~~~~-~~~L~~L~l~~~~l~~~~  244 (369)
                      +...+ +|++|++++|.......     .+..+ ++|+.|++++|.+.+     ++..+.. .++|++|++++|.++..+
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  241 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS  241 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence            44555 99999999999654442     34455 599999999999887     3433444 469999999999998543


Q ss_pred             -----hhhccCCcCcEecccCCc--c-----cccCCC---CCcccceecccccc
Q 017542          245 -----TSISQLSRLRWLYLVNCV--K-----LQSLPE---LPLLLVMLGASDCK  283 (369)
Q Consensus       245 -----~~~~~~~~L~~L~l~~~~--~-----l~~~~~---~~~~L~~L~l~~c~  283 (369)
                           ..+..+++|++|++++|.  .     +..++.   ..++|+.|++++++
T Consensus       242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence                 344778999999999994  1     222222   33567888887764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.75  E-value=1.5e-17  Score=157.77  Aligned_cols=184  Identities=23%  Similarity=0.233  Sum_probs=96.3

Q ss_pred             CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccc
Q 017542           41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE  120 (369)
Q Consensus        41 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  120 (369)
                      +++.|+++++.++.+|..+  +++|++|++++|... .+|   ..+++|++|++++|.... +|. +..  +|++|++++
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred             CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence            4555555555555555433  245555555554332 344   234555555555543332 443 322  555555554


Q ss_pred             cccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCcc
Q 017542          121 ASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPL  200 (369)
Q Consensus       121 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  200 (369)
                      |.... +|.   .+++|+.|++++|. ++.+|.   .+++|++|++++|.++.+|. +.  ++|+.|++++|....+|. 
T Consensus       130 N~l~~-lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-  197 (571)
T 3cvr_A          130 NQLTM-LPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-  197 (571)
T ss_dssp             SCCSC-CCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-
T ss_pred             CcCCC-CCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-
Confidence            43322 333   34556666665543 223443   34556666666666655555 33  566666666666555555 


Q ss_pred             ccCCCCC-------cEEeccCCCCccCCCCCCCCCCCCEEEccCCcCC-ccchhhc
Q 017542          201 LSGLSSL-------KKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIE-SLPTSIS  248 (369)
Q Consensus       201 ~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~  248 (369)
                      +..  +|       +.|++++|.+..+|..+..+++|++|++++|.++ .+|..+.
T Consensus       198 ~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~  251 (571)
T 3cvr_A          198 VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLS  251 (571)
T ss_dssp             CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred             HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence            332  45       6666666666666665555666666666666665 4444443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.75  E-value=1.4e-20  Score=181.65  Aligned_cols=127  Identities=17%  Similarity=0.157  Sum_probs=61.8

Q ss_pred             CCCCccEEecCCCCCccccC----CccCCeeEEecCCc-cCcc--cCccCCCCCCCCEEeCcCCccccc----ccccccC
Q 017542           17 HFISSIKIDCYKCVNLREFP----RISGNVVELNLMCT-PIEE--VPLSIECLPNLETLEMSFCNSLKR----LSTSICK   85 (369)
Q Consensus        17 ~~~~L~~L~l~~~~~l~~~~----~~~~~L~~L~l~~~-~~~~--l~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~   85 (369)
                      .+++|++|++++|......+    ..+++|++|+++++ .++.  ++.....+++|++|++++|.....    ++.....
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            35566666666655211111    12336666666444 3432  333334566666666666553221    1222224


Q ss_pred             CCCCcEEecCCCc-CC--ccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeec
Q 017542           86 LKSLRSLDLSYCI-NL--ESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLT  143 (369)
Q Consensus        86 ~~~L~~L~l~~~~-~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  143 (369)
                      +++|++|++++|. ..  ..+...+..+++|++|++++|.....++..+..+++|++|++.
T Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~  243 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG  243 (594)
T ss_dssp             CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred             CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence            5566666666654 01  1122233445666666666654444444555555566666543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.75  E-value=1e-20  Score=182.65  Aligned_cols=218  Identities=20%  Similarity=0.213  Sum_probs=141.6

Q ss_pred             CCCCccEEecCCCCCccccC------------------CccCCeeEEecCCccCcc-cCccCC-CCCCCCEEeCcCCccc
Q 017542           17 HFISSIKIDCYKCVNLREFP------------------RISGNVVELNLMCTPIEE-VPLSIE-CLPNLETLEMSFCNSL   76 (369)
Q Consensus        17 ~~~~L~~L~l~~~~~l~~~~------------------~~~~~L~~L~l~~~~~~~-l~~~~~-~~~~L~~L~l~~~~~~   76 (369)
                      .+++|+.|+++++....++.                  ...++|++|+++++.++. .+..+. .+++|++|++++|...
T Consensus        64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~  143 (594)
T 2p1m_B           64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF  143 (594)
T ss_dssp             HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred             hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence            67899999999987554432                  123389999998888763 222333 6899999999998655


Q ss_pred             cc--ccccccCCCCCcEEecCCCcCCcc----CchhhhccCccceeeccccc-ccc--ccchhhhcCCCCCeEeecCCCC
Q 017542           77 KR--LSTSICKLKSLRSLDLSYCINLES----FPEILEKMELLEEINLEEAS-NIK--ELPSSIENLEGLKQLKLTGCTK  147 (369)
Q Consensus        77 ~~--~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~-~~~--~~~~~~~~l~~L~~L~l~~~~~  147 (369)
                      +.  ++..+.++++|++|++++|.....    ++.....+++|++|++++|. .+.  .+......+++|++|++++|..
T Consensus       144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~  223 (594)
T 2p1m_B          144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP  223 (594)
T ss_dssp             EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred             CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence            43  455455799999999999874433    23334578899999999876 111  2333345689999999999855


Q ss_pred             CCCCCcccCCCcchhhhccCccc-------------------------------CCCCCcccccCCCCcEEeecCCCCCC
Q 017542          148 LGSLPESLGNLKSLERLHAGLLA-------------------------------IPQAPSSIVDLNKLETLSLFECRGLV  196 (369)
Q Consensus       148 ~~~~~~~~~~l~~L~~L~l~~~~-------------------------------~~~~~~~l~~~~~L~~L~l~~~~~~~  196 (369)
                      .+.++..+..+++|++|+++.+.                               ...++..+..+++|++|++++|....
T Consensus       224 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~  303 (594)
T 2p1m_B          224 LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS  303 (594)
T ss_dssp             HHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCH
T ss_pred             HHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCH
Confidence            44455455566666666644332                               11222233356788888888877321


Q ss_pred             --CCccccCCCCCcEEeccCCCCcc--CCCCCCCCCCCCEEEc
Q 017542          197 --LPPLLSGLSSLKKLELGDCEIME--IPPDIGCLSSLESLNL  235 (369)
Q Consensus       197 --~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l  235 (369)
                        +...+..+++|+.|++++| +..  +......+++|++|++
T Consensus       304 ~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L  345 (594)
T 2p1m_B          304 YDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRV  345 (594)
T ss_dssp             HHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEE
T ss_pred             HHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEE
Confidence              2223556788888888877 322  2111233566777766

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.74  E-value=5.3e-17  Score=153.99  Aligned_cols=180  Identities=21%  Similarity=0.234  Sum_probs=148.5

Q ss_pred             CCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEee
Q 017542           63 PNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKL  142 (369)
Q Consensus        63 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  142 (369)
                      .+|++|++++|... .+|..+  +++|++|++++|... .+|   ..+++|++|++++|.... +|. +..  +|++|++
T Consensus        59 ~~L~~L~Ls~n~L~-~lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           59 NQFSELQLNRLNLS-SLPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TTCSEEECCSSCCS-CCCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred             CCccEEEeCCCCCC-ccCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence            38999999997654 477655  388999999998655 666   568999999999876544 666 544  9999999


Q ss_pred             cCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCC
Q 017542          143 TGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPP  222 (369)
Q Consensus       143 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  222 (369)
                      ++|.. +.+|.   .+++|+.|++++|.++.+|.   .+++|+.|++++|....+|. +.  ++|+.|++++|.+..+|.
T Consensus       128 s~N~l-~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~  197 (571)
T 3cvr_A          128 DNNQL-TMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA  197 (571)
T ss_dssp             CSSCC-SCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC
T ss_pred             CCCcC-CCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh
Confidence            99654 44765   68899999999999998887   57899999999999888888 55  899999999999999887


Q ss_pred             CCCCCCCC-------CEEEccCCcCCccchhhccCCcCcEecccCCccccc
Q 017542          223 DIGCLSSL-------ESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQS  266 (369)
Q Consensus       223 ~~~~~~~L-------~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~  266 (369)
                       +..  +|       ++|++++|.++.+|..+..+++|+.|++++|+--..
T Consensus       198 -~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~  245 (571)
T 3cvr_A          198 -VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSR  245 (571)
T ss_dssp             -CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred             -HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCc
Confidence             443  77       999999999999999898899999999999954333

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.73  E-value=2.4e-17  Score=144.38  Aligned_cols=183  Identities=26%  Similarity=0.308  Sum_probs=95.6

Q ss_pred             EEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeecccccc
Q 017542           44 ELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASN  123 (369)
Q Consensus        44 ~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  123 (369)
                      .+.+....++.+.. ...+++|++|++++|.. ..++. +..+++|++|++++|.... ++. +..+++|++|++++|..
T Consensus        28 ~~~l~~~~~~~~~~-~~~l~~L~~L~l~~~~i-~~~~~-~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l  102 (291)
T 1h6t_A           28 KDNLKKKSVTDAVT-QNELNSIDQIIANNSDI-KSVQG-IQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKV  102 (291)
T ss_dssp             HHHTTCSCTTSEEC-HHHHHTCCEEECTTSCC-CCCTT-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCC
T ss_pred             HHHhcCCCcccccc-hhhcCcccEEEccCCCc-ccChh-HhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcC
Confidence            33444444443322 34456677777776543 33333 5566677777777654433 222 56666666666665543


Q ss_pred             ccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCccccC
Q 017542          124 IKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSG  203 (369)
Q Consensus       124 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  203 (369)
                      . .++ .+..+++|++|++++|                        .+..+ ..+..+++|+.|++++|....+ ..+..
T Consensus       103 ~-~~~-~l~~l~~L~~L~L~~n------------------------~i~~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~  154 (291)
T 1h6t_A          103 K-DLS-SLKDLKKLKSLSLEHN------------------------GISDI-NGLVHLPQLESLYLGNNKITDI-TVLSR  154 (291)
T ss_dssp             C-CGG-GGTTCTTCCEEECTTS------------------------CCCCC-GGGGGCTTCCEEECCSSCCCCC-GGGGG
T ss_pred             C-CCh-hhccCCCCCEEECCCC------------------------cCCCC-hhhcCCCCCCEEEccCCcCCcc-hhhcc
Confidence            2 222 2455555555555554                        33333 2344445555555555554444 23445


Q ss_pred             CCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccchhhccCCcCcEecccCC
Q 017542          204 LSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNC  261 (369)
Q Consensus       204 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~  261 (369)
                      +++|+.|++++|.+.+++. +..+++|++|++++|.++.++. +..+++|+.|++++|
T Consensus       155 l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          155 LTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQ  210 (291)
T ss_dssp             CTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEE
T ss_pred             CCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCC
Confidence            5555555555555555433 4555555566666555555542 555556666666555

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.73  E-value=1.9e-17  Score=144.98  Aligned_cols=187  Identities=23%  Similarity=0.267  Sum_probs=122.7

Q ss_pred             ccEEecCCCCCccccCC--ccCCeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCc
Q 017542           21 SIKIDCYKCVNLREFPR--ISGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCI   98 (369)
Q Consensus        21 L~~L~l~~~~~l~~~~~--~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~   98 (369)
                      +..+.+.... +.++..  .+.+|++|+++++.++.++. +..+++|++|++++|.... ++. +..+++|++|++++|.
T Consensus        26 ~~~~~l~~~~-~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~  101 (291)
T 1h6t_A           26 TIKDNLKKKS-VTDAVTQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENK  101 (291)
T ss_dssp             HHHHHTTCSC-TTSEECHHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSC
T ss_pred             HHHHHhcCCC-cccccchhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCc
Confidence            4444555554 444332  23399999999999998865 7889999999999976554 444 8899999999999986


Q ss_pred             CCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCccc
Q 017542           99 NLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSI  178 (369)
Q Consensus        99 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l  178 (369)
                      ... ++ .+..+++|++|++++|.... + ..+..+++|+.|++++|... .+ ..+..+                    
T Consensus       102 l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~-~~-~~l~~l--------------------  155 (291)
T 1h6t_A          102 VKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKIT-DI-TVLSRL--------------------  155 (291)
T ss_dssp             CCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCC-CC-GGGGGC--------------------
T ss_pred             CCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCC-cc-hhhccC--------------------
Confidence            543 44 48899999999999876443 3 35677888888888875432 22 234444                    


Q ss_pred             ccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCc
Q 017542          179 VDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIES  242 (369)
Q Consensus       179 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  242 (369)
                         ++|+.|++++|....++. +..+++|+.|++++|.+.+++. +..+++|+.|++++|.++.
T Consensus       156 ---~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          156 ---TKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             ---TTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEEC
T ss_pred             ---CCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccC
Confidence               445555555554444433 4445555555555555555432 4555556666666555543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.72  E-value=6.3e-17  Score=134.54  Aligned_cols=68  Identities=19%  Similarity=0.182  Sum_probs=34.9

Q ss_pred             ccCCCCcEEeecCCCCCCCCc-cccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCC-ccchhhccCCc
Q 017542          179 VDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIE-SLPTSISQLSR  252 (369)
Q Consensus       179 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~  252 (369)
                      ..+++|++|++++|....++. .+..+++|+.|++++|.+.      ..+++|++|+++.|.++ .+|..++.++.
T Consensus       121 ~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          121 DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             ccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence            344455555555554443333 2445555666666555332      23455666666666665 55555554433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.72  E-value=3e-17  Score=135.28  Aligned_cols=148  Identities=16%  Similarity=0.201  Sum_probs=83.4

Q ss_pred             CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccc
Q 017542           41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE  120 (369)
Q Consensus        41 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  120 (369)
                      +|++|+++++.++.++ .+..+++|++|++++| ....++ .+..+++|++|++++|......+..+..+++|++|++++
T Consensus        45 ~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~  121 (197)
T 4ezg_A           45 SLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH  121 (197)
T ss_dssp             TCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred             CccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence            6666777666666666 4666667777777666 233332 356666677777766655544555566666666666666


Q ss_pred             cccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCC
Q 017542          121 ASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECR  193 (369)
Q Consensus       121 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~  193 (369)
                      |......+..+..+++|++|++++|..++.++ .+..+++|++|++++|.+..++ .+..+++|+.|++++|.
T Consensus       122 n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             SBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred             CccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence            65555455556666666666666654344443 3444444555555444444433 34444444444444443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.71  E-value=8.7e-17  Score=133.70  Aligned_cols=174  Identities=17%  Similarity=0.142  Sum_probs=80.5

Q ss_pred             EEecCCCCCccccCCccC-CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCC
Q 017542           23 KIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINL  100 (369)
Q Consensus        23 ~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  100 (369)
                      .++++++. +..+|.... +|++|+++++.++.++. .+..+++|++|++++|......+..+..+++|++|++++|...
T Consensus        11 ~v~c~~~~-l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~   89 (208)
T 2o6s_A           11 TVECYSQG-RTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ   89 (208)
T ss_dssp             EEECCSSC-CSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             EEEecCCC-ccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC
Confidence            34444444 444443333 55555555555554443 2344555555555554333222223344455555555544333


Q ss_pred             ccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcc-cc
Q 017542          101 ESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSS-IV  179 (369)
Q Consensus       101 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-l~  179 (369)
                      ...+..+..+++|++|++++|...                        ...+..+..+++|++|++++|.+..++.. +.
T Consensus        90 ~~~~~~~~~l~~L~~L~L~~N~l~------------------------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~  145 (208)
T 2o6s_A           90 SLPNGVFDKLTQLKELALNTNQLQ------------------------SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFD  145 (208)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCC------------------------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             ccCHhHhcCccCCCEEEcCCCcCc------------------------ccCHhHhccCCcCCEEECCCCccceeCHHHhc
Confidence            222233344444444444433322                        22222234444555555555554444332 45


Q ss_pred             cCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCcc-CCCCCCCC
Q 017542          180 DLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIME-IPPDIGCL  227 (369)
Q Consensus       180 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~  227 (369)
                      .+++|++|++++|..      ...+++|+.|+++.|.+.+ +|.+++.+
T Consensus       146 ~l~~L~~L~l~~N~~------~~~~~~l~~L~~~~n~~~g~ip~~~~~l  188 (208)
T 2o6s_A          146 RLTSLQYIWLHDNPW------DCTCPGIRYLSEWINKHSGVVRNSAGSV  188 (208)
T ss_dssp             TCTTCCEEECCSCCB------CCCTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred             cCCCccEEEecCCCe------ecCCCCHHHHHHHHHhCCceeeccCccc
Confidence            556666666666642      2334566666666666665 55554443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.69  E-value=8.2e-17  Score=154.25  Aligned_cols=168  Identities=23%  Similarity=0.240  Sum_probs=80.8

Q ss_pred             CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccc
Q 017542           41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE  120 (369)
Q Consensus        41 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  120 (369)
                      +|+.|+++++.+..++. +..+++|+.|+|++|.... ++. +..+++|+.|++++|... .++ .+..+++|++|++++
T Consensus        44 ~L~~L~l~~n~i~~l~~-l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L~Ls~  118 (605)
T 1m9s_A           44 SIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEH  118 (605)
T ss_dssp             TCCCCBCTTCCCCCCTT-GGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCC-CCT-TSTTCTTCCEEECTT
T ss_pred             CCCEEECcCCCCCCChH-HccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECcCCCCC-CCh-hhccCCCCCEEEecC
Confidence            56666666666655543 5556666666666654332 222 555666666666665332 222 355555555665554


Q ss_pred             cccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCcc
Q 017542          121 ASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPL  200 (369)
Q Consensus       121 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  200 (369)
                      |.... + ..+..+++|+.|++++|... .+ ..+..+++|+.|++++|.+..++. +..+++|+.|++++|....++ .
T Consensus       119 N~l~~-l-~~l~~l~~L~~L~Ls~N~l~-~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~-~  192 (605)
T 1m9s_A          119 NGISD-I-NGLVHLPQLESLYLGNNKIT-DI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-A  192 (605)
T ss_dssp             SCCCC-C-GGGGGCTTCSEEECCSSCCC-CC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-G
T ss_pred             CCCCC-C-ccccCCCccCEEECCCCccC-Cc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh-H
Confidence            44322 2 23445555555555554322 22 234444444444444444444332 444444444444444433332 2


Q ss_pred             ccCCCCCcEEeccCCCCcc
Q 017542          201 LSGLSSLKKLELGDCEIME  219 (369)
Q Consensus       201 ~~~~~~L~~L~l~~~~~~~  219 (369)
                      +..+++|+.|++++|.+..
T Consensus       193 l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          193 LAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             GTTCTTCSEEECCSEEEEC
T ss_pred             HccCCCCCEEEccCCcCcC
Confidence            3444444444444444433

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.68  E-value=3.4e-16  Score=131.22  Aligned_cols=148  Identities=16%  Similarity=0.128  Sum_probs=88.5

Q ss_pred             cEEecCCCCCccccCCccC-CeeEEecCCccCcccCc--cCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCc
Q 017542           22 IKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPL--SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCI   98 (369)
Q Consensus        22 ~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~   98 (369)
                      +.++++++. +..+|..++ .+++|++++|.++.++.  .+..+++|++|++++|......+..+.++++|++|++++|.
T Consensus        14 ~~l~~s~n~-l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~   92 (220)
T 2v70_A           14 TTVDCSNQK-LNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR   92 (220)
T ss_dssp             TEEECCSSC-CSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CEeEeCCCC-cccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence            467777766 667776555 67777777777776532  35667777777777765544444456667777777777765


Q ss_pred             CCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCccc
Q 017542           99 NLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLA  170 (369)
Q Consensus        99 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  170 (369)
                      .....+..+..+++|++|++++|......+..+..+++|++|++++|...+..+..+..+++|+.|++++|.
T Consensus        93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A           93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence            555555556666666666666655544445555555666666665544333334444444444444444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.68  E-value=2.7e-18  Score=163.54  Aligned_cols=105  Identities=23%  Similarity=0.258  Sum_probs=67.6

Q ss_pred             hhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcC
Q 017542          161 LERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNI  240 (369)
Q Consensus       161 L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l  240 (369)
                      |+.|++++|.++.+|. +..+++|+.|++++|....+|..++.+++|+.|++++|.+.++| .+..+++|++|++++|.+
T Consensus       443 L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l  520 (567)
T 1dce_A          443 VRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRL  520 (567)
T ss_dssp             CSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCC
T ss_pred             ceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCC
Confidence            5556666666666654 66666666666666666666666666666666666666666655 566666666666666666


Q ss_pred             Ccc--chhhccCCcCcEecccCCcccccCC
Q 017542          241 ESL--PTSISQLSRLRWLYLVNCVKLQSLP  268 (369)
Q Consensus       241 ~~~--~~~~~~~~~L~~L~l~~~~~l~~~~  268 (369)
                      +.+  |..++.+++|+.|++++| .++.+|
T Consensus       521 ~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~  549 (567)
T 1dce_A          521 QQSAAIQPLVSCPRLVLLNLQGN-SLCQEE  549 (567)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTS-GGGGSS
T ss_pred             CCCCCcHHHhcCCCCCEEEecCC-cCCCCc
Confidence            655  566666666777776666 344443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.68  E-value=4.8e-16  Score=130.29  Aligned_cols=124  Identities=20%  Similarity=0.161  Sum_probs=77.2

Q ss_pred             cEEecCCCCCccccCCccC-CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcC
Q 017542           22 IKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCIN   99 (369)
Q Consensus        22 ~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   99 (369)
                      +.++++++. +..+|..++ +++.|++++|.++.++. .+..+++|++|++++|......+..+.++++|++|++++|..
T Consensus        14 ~~v~c~~~~-l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l   92 (220)
T 2v9t_B           14 NIVDCRGKG-LTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI   92 (220)
T ss_dssp             TEEECTTSC-CSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred             CEEEcCCCC-cCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence            466777666 677776554 77777777777776654 566677777777777665555566666677777777777654


Q ss_pred             CccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCC
Q 017542          100 LESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCT  146 (369)
Q Consensus       100 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  146 (369)
                      ....+..+..+++|++|++++|......+..+..+++|++|++++|.
T Consensus        93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  139 (220)
T 2v9t_B           93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK  139 (220)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc
Confidence            43333445566666666666555444444455555555555555543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.68  E-value=5.3e-16  Score=148.63  Aligned_cols=192  Identities=24%  Similarity=0.271  Sum_probs=128.9

Q ss_pred             CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccc
Q 017542           41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE  120 (369)
Q Consensus        41 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  120 (369)
                      .+..+.+..+.+..+.. +..+++|+.|++++|.. ..++ .+..+++|+.|++++|..... +. +..+++|++|++++
T Consensus        22 ~l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i-~~l~-~l~~l~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~Ls~   96 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDI-KSVQ-GIQYLPNVTKLFLNGNKLTDI-KP-LTNLKNLGWLFLDE   96 (605)
T ss_dssp             HHHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCC-CCCT-TGGGCTTCCEEECTTSCCCCC-GG-GGGCTTCCEEECCS
T ss_pred             HHHHHhccCCCcccccc-hhcCCCCCEEECcCCCC-CCCh-HHccCCCCCEEEeeCCCCCCC-hh-hccCCCCCEEECcC
Confidence            45555666666655433 45677888888888654 3444 377788888888888755443 33 77888888888887


Q ss_pred             cccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCcc
Q 017542          121 ASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPL  200 (369)
Q Consensus       121 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  200 (369)
                      |... .++ .+..+++|+.|++++|... .++ .+..+++|+.|++++|.+..+ ..+..+++|+.|++++|....++. 
T Consensus        97 N~l~-~l~-~l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-  170 (605)
T 1m9s_A           97 NKIK-DLS-SLKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-  170 (605)
T ss_dssp             SCCC-CCT-TSTTCTTCCEEECTTSCCC-CCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-
T ss_pred             CCCC-CCh-hhccCCCCCEEEecCCCCC-CCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-
Confidence            6543 333 5677778888888775533 333 466677777777777777666 556667777777777777655554 


Q ss_pred             ccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccc
Q 017542          201 LSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLP  244 (369)
Q Consensus       201 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~  244 (369)
                      +..+++|+.|++++|.+.+++ .+..+++|+.|++++|.+...|
T Consensus       171 l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          171 LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECCC
T ss_pred             hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCCc
Confidence            666777777777777776653 3666777777777777666443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.67  E-value=1.5e-16  Score=131.04  Aligned_cols=150  Identities=19%  Similarity=0.189  Sum_probs=81.8

Q ss_pred             CCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhc
Q 017542           86 LKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLH  165 (369)
Q Consensus        86 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  165 (369)
                      +++|++|++++|... .++ .+..+++|++|++++| .+..+ ..+..+++|++|++++|......+..+..+++|++|+
T Consensus        43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n-~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNI-HATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESC-CCSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCC-CCCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            344444444443222 223 3444444555555444 12222 2344455555555555443333344455555555566


Q ss_pred             cCcccCCC-CCcccccCCCCcEEeecCCC-CCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCC
Q 017542          166 AGLLAIPQ-APSSIVDLNKLETLSLFECR-GLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIE  241 (369)
Q Consensus       166 l~~~~~~~-~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  241 (369)
                      +++|.+.. .+..+..+++|++|++++|. ...++ .+..+++|+.|++++|.+.+++ .+..+++|++|++++|.+.
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence            65555553 34455666777777777776 55555 4666777777777777777755 4666777888888777654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.66  E-value=5e-16  Score=140.31  Aligned_cols=170  Identities=19%  Similarity=0.188  Sum_probs=125.6

Q ss_pred             cEEecCCCCCccccCCccC-CeeEEecCCccCcccCcc-CC-CCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCc
Q 017542           22 IKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPLS-IE-CLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCI   98 (369)
Q Consensus        22 ~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~   98 (369)
                      +.++++++. +..+|..++ .++.|++++|.++.++.. +. .+++|++|++++|......+..+..+++|++|++++|.
T Consensus        21 ~~l~c~~~~-l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~   99 (361)
T 2xot_A           21 NILSCSKQQ-LPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH   99 (361)
T ss_dssp             TEEECCSSC-CSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEeCCCC-cCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence            578888887 888887666 889999999999877654 54 78999999999876665555678888999999999987


Q ss_pred             CCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcc-c---CCCcchhhhccCcccCCCC
Q 017542           99 NLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPES-L---GNLKSLERLHAGLLAIPQA  174 (369)
Q Consensus        99 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~---~~l~~L~~L~l~~~~~~~~  174 (369)
                      .....+..+..+++|++|++++|......+..+..+++|++|++++|. +..++.. +   ..+++|+.|++++|.+..+
T Consensus       100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  178 (361)
T 2xot_A          100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKKL  178 (361)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred             CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence            665556678888999999998877666666778888888888888854 4444433 2   4577777777777777766


Q ss_pred             C-cccccCCC--CcEEeecCCC
Q 017542          175 P-SSIVDLNK--LETLSLFECR  193 (369)
Q Consensus       175 ~-~~l~~~~~--L~~L~l~~~~  193 (369)
                      + ..+..++.  ++.|++++|+
T Consensus       179 ~~~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          179 PLTDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             CHHHHHHSCHHHHTTEECCSSC
T ss_pred             CHHHhhhccHhhcceEEecCCC
Confidence            5 23444554  3667777665

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.66  E-value=1.5e-15  Score=127.19  Aligned_cols=150  Identities=18%  Similarity=0.191  Sum_probs=91.2

Q ss_pred             eEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccc
Q 017542           43 VELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEAS  122 (369)
Q Consensus        43 ~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  122 (369)
                      +.++.+++.++.+|..+.  ++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++++|.
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            456777777777776543  678888888866554444466777788888887776655556677777777777777655


Q ss_pred             cccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCc-cc
Q 017542          123 NIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPP-LL  201 (369)
Q Consensus       123 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~  201 (369)
                      .....+..+..+++|++|++++|......+..                       +..+++|+.|++++|....++. .+
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~-----------------------~~~l~~L~~L~L~~N~l~~~~~~~~  148 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDA-----------------------FQDLHNLNLLSLYDNKLQTIAKGTF  148 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-----------------------TTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             CCccCHhHccCCCCCCEEECCCCCCCEeCHHH-----------------------cCCCCCCCEEECCCCcCCEECHHHH
Confidence            44333334455666666666664433333333                       4445555555555555444443 35


Q ss_pred             cCCCCCcEEeccCCCC
Q 017542          202 SGLSSLKKLELGDCEI  217 (369)
Q Consensus       202 ~~~~~L~~L~l~~~~~  217 (369)
                      ..+++|+.|++++|++
T Consensus       149 ~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          149 SPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             TTCTTCCEEECCSSCE
T ss_pred             hCCCCCCEEEeCCCCc
Confidence            5556666666666654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.65  E-value=4.2e-18  Score=162.23  Aligned_cols=194  Identities=20%  Similarity=0.169  Sum_probs=144.4

Q ss_pred             CCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCc-------------CCccCchhhhccCccceee-cccccccc
Q 017542           60 ECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCI-------------NLESFPEILEKMELLEEIN-LEEASNIK  125 (369)
Q Consensus        60 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~~~~  125 (369)
                      ..+++|+.|++++|. .+.+|..++.+++|+.|++++|.             .....|..++.+++|+.|+ ++.+. ..
T Consensus       346 ~~~~~L~~L~Ls~n~-L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~-~~  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY-LD  423 (567)
T ss_dssp             STTTTSSSCCCCHHH-HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH-HH
T ss_pred             ccCccceeccCChhh-HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc-cc
Confidence            567888888888854 45778888888888888886653             3344566777888888887 44332 11


Q ss_pred             ccch------hhhc--CCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCC
Q 017542          126 ELPS------SIEN--LEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVL  197 (369)
Q Consensus       126 ~~~~------~~~~--l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  197 (369)
                      .++.      .+..  ...|+.|++++|. ++.+|. ++.+++|+.|++++|.+..+|..+..+++|+.|++++|....+
T Consensus       424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l  501 (567)
T 1dce_A          424 DLRSKFLLENSVLKMEYADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV  501 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred             hhhhhhhhcccccccCccCceEEEecCCC-CCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCC
Confidence            1111      1111  1368889998864 455675 8888889999999998888888888889999999999887777


Q ss_pred             CccccCCCCCcEEeccCCCCccC--CCCCCCCCCCCEEEccCCcCCccchh----hccCCcCcEecc
Q 017542          198 PPLLSGLSSLKKLELGDCEIMEI--PPDIGCLSSLESLNLSGNNIESLPTS----ISQLSRLRWLYL  258 (369)
Q Consensus       198 ~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~l~~~~~~----~~~~~~L~~L~l  258 (369)
                      | .++.+++|+.|++++|.+.++  |..+..+++|++|++++|.++.+|..    +..+|+|+.|++
T Consensus       502 p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          502 D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            7 688888999999999988886  77788888999999999988866543    244788888753

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.65  E-value=2.5e-16  Score=135.74  Aligned_cols=167  Identities=20%  Similarity=0.260  Sum_probs=78.7

Q ss_pred             CCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEee
Q 017542           63 PNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKL  142 (369)
Q Consensus        63 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  142 (369)
                      .++..++++++. .+.++ .+..+++|++|++++|.. ..++ .+..+++|++|++++|.. ..++. +..+++|++|++
T Consensus        19 ~~l~~l~l~~~~-i~~~~-~~~~l~~L~~L~l~~n~i-~~l~-~l~~l~~L~~L~L~~N~i-~~~~~-l~~l~~L~~L~L   92 (263)
T 1xeu_A           19 ANAVKQNLGKQS-VTDLV-SQKELSGVQNFNGDNSNI-QSLA-GMQFFTNLKELHLSHNQI-SDLSP-LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHTCSC-TTSEE-CHHHHTTCSEEECTTSCC-CCCT-TGGGCTTCCEEECCSSCC-CCCGG-GTTCSSCCEEEC
T ss_pred             HHHHHHHhcCCC-ccccc-chhhcCcCcEEECcCCCc-ccch-HHhhCCCCCEEECCCCcc-CCChh-hccCCCCCEEEC
Confidence            344455555533 22333 245566666666666533 2333 455666666666665443 22333 555566666666


Q ss_pred             cCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCC
Q 017542          143 TGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPP  222 (369)
Q Consensus       143 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  222 (369)
                      ++|. ++.++. +.. ++|++|++++|.+..++ .+..+++|+.|++++|....++ .+..+++|+.|++++|.+.++ .
T Consensus        93 ~~N~-l~~l~~-~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~  166 (263)
T 1xeu_A           93 NRNR-LKNLNG-IPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-G  166 (263)
T ss_dssp             CSSC-CSCCTT-CCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-T
T ss_pred             CCCc-cCCcCc-ccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-H
Confidence            6543 222322 111 44555555555444432 3444444555555444444333 234444444444444444444 2


Q ss_pred             CCCCCCCCCEEEccCCcCC
Q 017542          223 DIGCLSSLESLNLSGNNIE  241 (369)
Q Consensus       223 ~~~~~~~L~~L~l~~~~l~  241 (369)
                      .+..+++|++|++++|.++
T Consensus       167 ~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          167 GLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             TSTTCCCCCEEEEEEEEEE
T ss_pred             HhccCCCCCEEeCCCCccc
Confidence            3444444444444444443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.65  E-value=5.9e-16  Score=139.85  Aligned_cols=174  Identities=20%  Similarity=0.110  Sum_probs=121.9

Q ss_pred             eeEEecCCccCcccCccCCCCCCCCEEeCcCCccccccccccc-CCCCCcEEecCCCcCCccCchhhhccCccceeeccc
Q 017542           42 VVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSIC-KLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE  120 (369)
Q Consensus        42 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  120 (369)
                      -+.++++++.++.+|..+.  +.+++|++++|......+..+. .+++|++|++++|......+..+..+++|++|++++
T Consensus        20 ~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           20 SNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            3578888888988887543  5689999999766555455565 789999999999876666667788899999999998


Q ss_pred             cccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCccc----ccCCCCcEEeecCCCCCC
Q 017542          121 ASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSI----VDLNKLETLSLFECRGLV  196 (369)
Q Consensus       121 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l----~~~~~L~~L~l~~~~~~~  196 (369)
                      |......+..+..+++|+.|++++|......+..+..+++|+.|++++|.+..++..+    ..+++|+.|++++|....
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            7755555556778888888888887655555566777777777777777777666543    346667777777666555


Q ss_pred             CCc-cccCCCC--CcEEeccCCCC
Q 017542          197 LPP-LLSGLSS--LKKLELGDCEI  217 (369)
Q Consensus       197 ~~~-~~~~~~~--L~~L~l~~~~~  217 (369)
                      ++. .+..++.  ++.|++++|++
T Consensus       178 l~~~~~~~l~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          178 LPLTDLQKLPAWVKNGLYLHNNPL  201 (361)
T ss_dssp             CCHHHHHHSCHHHHTTEECCSSCE
T ss_pred             cCHHHhhhccHhhcceEEecCCCc
Confidence            552 3333443  25566666554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.64  E-value=3.9e-15  Score=125.57  Aligned_cols=146  Identities=18%  Similarity=0.151  Sum_probs=65.1

Q ss_pred             EecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccc
Q 017542           45 LNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNI  124 (369)
Q Consensus        45 L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  124 (369)
                      ++.+++.++.+|..+.  ++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++++|...
T Consensus        24 v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~  101 (229)
T 3e6j_A           24 VDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT  101 (229)
T ss_dssp             EECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             eEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC
Confidence            3444444444443221  34444444444333333333444444444444444332222233344444444444444332


Q ss_pred             cccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCc-ccccCCCCcEEeecCCC
Q 017542          125 KELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPS-SIVDLNKLETLSLFECR  193 (369)
Q Consensus       125 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~  193 (369)
                      ...+..+..+++|++|++++|. +..+|..+..+++|++|++++|.+..++. .+..+++|+.|++++|.
T Consensus       102 ~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          102 VLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             ccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence            2222333444455555554432 23444444555555555555555554442 34555666666666665

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.64  E-value=3.3e-15  Score=125.18  Aligned_cols=151  Identities=19%  Similarity=0.138  Sum_probs=90.0

Q ss_pred             eEEecCCccCcccCccCCCCCCCCEEeCcCCccccccc-ccccCCCCCcEEecCCCcCCccCchhhhccCccceeecccc
Q 017542           43 VELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLS-TSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEA  121 (369)
Q Consensus        43 ~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  121 (369)
                      +.++++++.++.+|..+.  +.+++|++++|......+ ..+..+++|++|++++|......+..+..+++|++|++++|
T Consensus        14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            467777777777776442  456788888765544323 34667777777777776655545556677777777777766


Q ss_pred             ccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCC-Ccc
Q 017542          122 SNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVL-PPL  200 (369)
Q Consensus       122 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~  200 (369)
                      ......+..+..+++|++|++++|......+..+.                       .+++|+.|++++|....+ |..
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-----------------------~l~~L~~L~L~~N~l~~~~~~~  148 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFI-----------------------GLSSVRLLSLYDNQITTVAPGA  148 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSST-----------------------TCTTCSEEECTTSCCCCBCTTT
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcC-----------------------CCccCCEEECCCCcCCEECHHH
Confidence            55444444566666666666666544333344444                       445555555555554433 344


Q ss_pred             ccCCCCCcEEeccCCCCc
Q 017542          201 LSGLSSLKKLELGDCEIM  218 (369)
Q Consensus       201 ~~~~~~L~~L~l~~~~~~  218 (369)
                      +..+++|+.|++++|.+.
T Consensus       149 ~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          149 FDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             TTTCTTCCEEECCSCCEE
T ss_pred             hcCCCCCCEEEecCcCCc
Confidence            555556666666665543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.63  E-value=3.8e-15  Score=125.59  Aligned_cols=151  Identities=18%  Similarity=0.090  Sum_probs=93.4

Q ss_pred             CCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecC
Q 017542           65 LETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTG  144 (369)
Q Consensus        65 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  144 (369)
                      -+.++.++ ...+.+|..+.  ++|++|++++|......+..+..+++|++|++++|......+..+..+++|+.|++++
T Consensus        21 ~~~v~c~~-~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRS-KRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTT-SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccC-CCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            34566655 33445554332  6677777777665555566666777777777776654333334456667777777777


Q ss_pred             CCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCc-cccCCCCCcEEeccCCCCc
Q 017542          145 CTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIM  218 (369)
Q Consensus       145 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~  218 (369)
                      |......+..+..+++|++|++++|.+..+|..+..+++|+.|++++|....++. .+..+++|+.|++++|++.
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            5443333344566677777777777777666666667777777777776655553 4566667777777776554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.61  E-value=1.5e-15  Score=130.85  Aligned_cols=167  Identities=22%  Similarity=0.204  Sum_probs=84.3

Q ss_pred             CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccc
Q 017542           41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE  120 (369)
Q Consensus        41 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  120 (369)
                      +++.++++.+.+++++ .+..+++|++|++++|. ...++ .+..+++|++|++++|.... ++. +..+++|++|++++
T Consensus        20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~   94 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNR   94 (263)
T ss_dssp             HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCS
T ss_pred             HHHHHHhcCCCccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCC
Confidence            4444555555555444 24455555666665543 22333 34555556666665543332 222 55555666666654


Q ss_pred             cccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCcc
Q 017542          121 ASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPL  200 (369)
Q Consensus       121 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  200 (369)
                      |.... ++.. .. ++|++|++++|. ++.++ .+..+++|++|++++|.++.++ .+..+++|+.|++++|....+ ..
T Consensus        95 N~l~~-l~~~-~~-~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~  167 (263)
T 1xeu_A           95 NRLKN-LNGI-PS-ACLSRLFLDNNE-LRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GG  167 (263)
T ss_dssp             SCCSC-CTTC-CC-SSCCEEECCSSC-CSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TT
T ss_pred             CccCC-cCcc-cc-CcccEEEccCCc-cCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HH
Confidence            43322 2221 11 555666665543 22232 3555555666666665555543 455555566666665554444 33


Q ss_pred             ccCCCCCcEEeccCCCCcc
Q 017542          201 LSGLSSLKKLELGDCEIME  219 (369)
Q Consensus       201 ~~~~~~L~~L~l~~~~~~~  219 (369)
                      +..+++|+.|++++|.+..
T Consensus       168 l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          168 LTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             STTCCCCCEEEEEEEEEEC
T ss_pred             hccCCCCCEEeCCCCcccC
Confidence            4555556666665555544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.59  E-value=3.6e-15  Score=119.47  Aligned_cols=132  Identities=25%  Similarity=0.310  Sum_probs=93.7

Q ss_pred             CCCCeEeecCCCCC-CCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCC-CCccccCCCCCcEEec
Q 017542          135 EGLKQLKLTGCTKL-GSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLV-LPPLLSGLSSLKKLEL  212 (369)
Q Consensus       135 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l  212 (369)
                      +++++|++++|... ..++..+..+++|++|++++|.+..+ ..+..+++|+.|++++|.... +|..+..+++|+.|++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence            45666666665533 25555556666677777777666665 566677788888888887655 5555666788888888


Q ss_pred             cCCCCccCC--CCCCCCCCCCEEEccCCcCCccch----hhccCCcCcEecccCCcccccCC
Q 017542          213 GDCEIMEIP--PDIGCLSSLESLNLSGNNIESLPT----SISQLSRLRWLYLVNCVKLQSLP  268 (369)
Q Consensus       213 ~~~~~~~~~--~~~~~~~~L~~L~l~~~~l~~~~~----~~~~~~~L~~L~l~~~~~l~~~~  268 (369)
                      ++|.+.+++  ..+..+++|++|++++|.++.++.    .+..+++|++|++++| .+..+|
T Consensus       103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~  163 (168)
T 2ell_A          103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAP  163 (168)
T ss_dssp             BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCC
T ss_pred             cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC-Chhhcc
Confidence            888887754  557778888888888888887765    6778888888888888 344433

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.55  E-value=9.5e-15  Score=116.98  Aligned_cols=133  Identities=22%  Similarity=0.210  Sum_probs=79.9

Q ss_pred             CCCcEEecCCCcCC-ccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhc
Q 017542           87 KSLRSLDLSYCINL-ESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLH  165 (369)
Q Consensus        87 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  165 (369)
                      ++|++|++++|... ..+|..+..+++|++|++++|..                         ..+ ..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l-------------------------~~~-~~~~~l~~L~~L~   77 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL-------------------------ISV-SNLPKLPKLKKLE   77 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCC-------------------------CCC-SSCCCCSSCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCC-------------------------CCh-hhhccCCCCCEEE
Confidence            55666666655433 24444445555555555554432                         222 3344455555555


Q ss_pred             cCcccCCC-CCcccccCCCCcEEeecCCCCCCCC--ccccCCCCCcEEeccCCCCccCCC----CCCCCCCCCEEEccCC
Q 017542          166 AGLLAIPQ-APSSIVDLNKLETLSLFECRGLVLP--PLLSGLSSLKKLELGDCEIMEIPP----DIGCLSSLESLNLSGN  238 (369)
Q Consensus       166 l~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~L~~L~l~~~  238 (369)
                      +++|.+.. +|..+..+++|+.|++++|....++  ..+..+++|+.|++++|.+..++.    .+..+++|++|++++|
T Consensus        78 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A           78 LSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             EESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred             CcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence            55555554 4444445677777777777766654  456677777777777777777665    5667778888888887


Q ss_pred             cCCccch
Q 017542          239 NIESLPT  245 (369)
Q Consensus       239 ~l~~~~~  245 (369)
                      .+..+|+
T Consensus       158 ~~~~~~~  164 (168)
T 2ell_A          158 EDQEAPD  164 (168)
T ss_dssp             TSCBCCS
T ss_pred             Chhhccc
Confidence            7776664

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.55  E-value=6e-15  Score=115.64  Aligned_cols=124  Identities=24%  Similarity=0.288  Sum_probs=85.4

Q ss_pred             CCCCeEeecCCCCC-CCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCC-CCccccCCCCCcEEec
Q 017542          135 EGLKQLKLTGCTKL-GSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLV-LPPLLSGLSSLKKLEL  212 (369)
Q Consensus       135 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l  212 (369)
                      +++++|++++|... +.++..+..+++|++|++++|.+..+ ..+..+++|+.|++++|.... +|..+..+++|+.|++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            45666666665443 34555556666666666666666655 556667777777777777655 5555566777888888


Q ss_pred             cCCCCccCC--CCCCCCCCCCEEEccCCcCCccch----hhccCCcCcEeccc
Q 017542          213 GDCEIMEIP--PDIGCLSSLESLNLSGNNIESLPT----SISQLSRLRWLYLV  259 (369)
Q Consensus       213 ~~~~~~~~~--~~~~~~~~L~~L~l~~~~l~~~~~----~~~~~~~L~~L~l~  259 (369)
                      ++|.+.+++  ..+..+++|++|++++|.++.++.    .+..+++|++|+++
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            888777643  556777888888888888776664    56778888888775

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.54  E-value=4.9e-14  Score=115.38  Aligned_cols=128  Identities=21%  Similarity=0.215  Sum_probs=106.7

Q ss_pred             cEEecCCCCCccccCCccC-CeeEEecCCccCcccCcc--CCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCc
Q 017542           22 IKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPLS--IECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCI   98 (369)
Q Consensus        22 ~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~   98 (369)
                      +.++++++. ++.+|..+. ++++|++++|.++.++..  +..+++|++|++++|...+..+..+.++++|++|++++|.
T Consensus        11 ~~l~~s~~~-l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~   89 (192)
T 1w8a_A           11 TTVDCTGRG-LKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             TEEECTTSC-CSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CEEEcCCCC-cCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence            688999888 788887665 999999999999887753  7889999999999987776667788889999999999987


Q ss_pred             CCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCC
Q 017542           99 NLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGS  150 (369)
Q Consensus        99 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  150 (369)
                      .....+..+..+++|++|++++|......+..+..+++|++|++++|.....
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            7766777788899999999998877777777888889999999988765443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.53  E-value=9.4e-14  Score=113.70  Aligned_cols=125  Identities=18%  Similarity=0.190  Sum_probs=102.1

Q ss_pred             cEEecCCCCCccccCCccC-CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCC
Q 017542           22 IKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINL  100 (369)
Q Consensus        22 ~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  100 (369)
                      ++++++++. +..+|..+. +|++|++++|.++.+|..+..+++|++|++++|......+..|.++++|++|++++|...
T Consensus        13 ~~l~~~~~~-l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~   91 (193)
T 2wfh_A           13 TVVRCSNKG-LKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR   91 (193)
T ss_dssp             TEEECTTSC-CSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CEEEcCCCC-CCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence            578888887 888887655 999999999999988888888999999999998776665667888999999999998776


Q ss_pred             ccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCC
Q 017542          101 ESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTK  147 (369)
Q Consensus       101 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  147 (369)
                      ...+..+..+++|++|++++|......+..+..+++|+.|++++|+.
T Consensus        92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            66667788899999999997765554445677888888888888654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.49  E-value=1.1e-13  Score=108.29  Aligned_cols=123  Identities=17%  Similarity=0.081  Sum_probs=64.2

Q ss_pred             CCccEEecCCCCCcc--ccCCccC---CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEe
Q 017542           19 ISSIKIDCYKCVNLR--EFPRISG---NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLD   93 (369)
Q Consensus        19 ~~L~~L~l~~~~~l~--~~~~~~~---~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~   93 (369)
                      ++++.|++++|. +.  .+|..+.   +|++|++++|.++.+ ..+..+++|++|++++|.....+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            456666666665 33  4544332   566666666555555 3455556666666666554444454444556666666


Q ss_pred             cCCCcCCcc-CchhhhccCccceeeccccccccccc---hhhhcCCCCCeEeec
Q 017542           94 LSYCINLES-FPEILEKMELLEEINLEEASNIKELP---SSIENLEGLKQLKLT  143 (369)
Q Consensus        94 l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l~  143 (369)
                      +++|..... .+..+..+++|++|++++|......+   ..+..+++|+.|+++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            665543321 22445556666666666554333222   245555555555543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.48  E-value=7.8e-15  Score=143.93  Aligned_cols=120  Identities=19%  Similarity=0.138  Sum_probs=64.5

Q ss_pred             CccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccc
Q 017542           49 CTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELP  128 (369)
Q Consensus        49 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  128 (369)
                      ++.+...+..+..+++|++|+|++|... .++..+..+++|++|+|++|... .+|..+..+++|++|++++|... .+|
T Consensus       210 ~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp  286 (727)
T 4b8c_D          210 ENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLP  286 (727)
T ss_dssp             ------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCC
T ss_pred             ccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccC
Confidence            3333333445556666666666665433 45544555666666666665443 55666666666666666655533 555


Q ss_pred             hhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCC
Q 017542          129 SSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIP  172 (369)
Q Consensus       129 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  172 (369)
                      ..+..+++|++|++++|. ++.+|..++.+++|+.|++++|.+.
T Consensus       287 ~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          287 AELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             SSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred             hhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccC
Confidence            566666666666666643 3455555666666666666666655

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.47  E-value=3.5e-14  Score=139.30  Aligned_cols=153  Identities=21%  Similarity=0.198  Sum_probs=104.1

Q ss_pred             ccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCC
Q 017542          126 ELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLS  205 (369)
Q Consensus       126 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  205 (369)
                      ..+..+..+++|+.|++++|. +..++..+..+++|++|++++|.+..+|..+..+++|+.|++++|.+..+|..+..++
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~  293 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCF  293 (727)
T ss_dssp             -------CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGT
T ss_pred             cChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCC
Confidence            345566777888888888855 4466766778888888888888888888888888999999999998888888888888


Q ss_pred             CCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCC-ccchhhccCC-cCcEecccCCcccccCCCCCcccceeccccc
Q 017542          206 SLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIE-SLPTSISQLS-RLRWLYLVNCVKLQSLPELPLLLVMLGASDC  282 (369)
Q Consensus       206 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~c  282 (369)
                      +|+.|++++|.+..+|..+..+++|++|+|++|.++ .+|..+.... .+..+++++|..-.   ..+..++.|++.++
T Consensus       294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~---~~p~~l~~l~l~~n  369 (727)
T 4b8c_D          294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEI---PLPHERRFIEINTD  369 (727)
T ss_dssp             TCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCC---CCCCC---------
T ss_pred             CCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccC---cCccccceeEeecc
Confidence            999999999988888888888899999999999888 4445443322 12235666663222   23345666666544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.47  E-value=2.7e-13  Score=110.90  Aligned_cols=128  Identities=20%  Similarity=0.152  Sum_probs=86.3

Q ss_pred             eEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccc-cccCCCCCcEEecCCCcCCccCchhhhccCccceeecccc
Q 017542           43 VELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLST-SICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEA  121 (369)
Q Consensus        43 ~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  121 (369)
                      ++++++++.++.+|..+.  ++|++|++++|......+. .+..+++|++|++++|......+..+..+++|++|++++|
T Consensus        11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            567888888888886543  3788888888755433332 3677888888888887766666777778888888888877


Q ss_pred             ccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCC
Q 017542          122 SNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIP  172 (369)
Q Consensus       122 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  172 (369)
                      ......+..+..+++|++|++++|...+..+..+..+++|++|++++|.+.
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            655555555667777777777776554444555555555555555555543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.46  E-value=6.5e-14  Score=112.97  Aligned_cols=126  Identities=20%  Similarity=0.205  Sum_probs=69.7

Q ss_pred             cCCCCCeEeecCCCCCCCCCcccCCC-cchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCcc-ccCCCCCcEE
Q 017542          133 NLEGLKQLKLTGCTKLGSLPESLGNL-KSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPL-LSGLSSLKKL  210 (369)
Q Consensus       133 ~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L  210 (369)
                      .+.+|++|++++|.. ..++. +..+ ++|+.|++++|.+..+ ..+..+++|+.|++++|....++.. +..+++|+.|
T Consensus        17 ~~~~L~~L~l~~n~l-~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           17 NAVRDRELDLRGYKI-PVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             CTTSCEEEECTTSCC-CSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CcCCceEEEeeCCCC-chhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence            344555555555432 23332 2222 2555555555555544 3455556666666666665555432 2556666666


Q ss_pred             eccCCCCccCCC--CCCCCCCCCEEEccCCcCCccchh----hccCCcCcEecccCC
Q 017542          211 ELGDCEIMEIPP--DIGCLSSLESLNLSGNNIESLPTS----ISQLSRLRWLYLVNC  261 (369)
Q Consensus       211 ~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~----~~~~~~L~~L~l~~~  261 (369)
                      ++++|.+..++.  .+..+++|++|++++|.++.+|..    +..+++|+.|++++|
T Consensus        94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence            666666655544  455566666666666666655543    566666666666665

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.44  E-value=2e-13  Score=121.57  Aligned_cols=86  Identities=16%  Similarity=0.274  Sum_probs=63.8

Q ss_pred             CCCCcEEeecCCCCCCCCc-cccCCCCCcEEeccCCCCccCCC-CCCCCCCCC-EEEccCCcCCccc-hhhccCCcCcEe
Q 017542          181 LNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIMEIPP-DIGCLSSLE-SLNLSGNNIESLP-TSISQLSRLRWL  256 (369)
Q Consensus       181 ~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~-~L~l~~~~l~~~~-~~~~~~~~L~~L  256 (369)
                      +++|+.+++.+|....++. .|.++++|+.+++.++ +..++. .+..+++|+ .+++.+ .++.++ .++.+|++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            6788888888887777765 6778888888888887 555443 467788888 888887 677665 567788888888


Q ss_pred             cccCCcccccCCC
Q 017542          257 YLVNCVKLQSLPE  269 (369)
Q Consensus       257 ~l~~~~~l~~~~~  269 (369)
                      ++.++ .++.++.
T Consensus       303 ~l~~n-~i~~I~~  314 (329)
T 3sb4_A          303 LATGD-KITTLGD  314 (329)
T ss_dssp             EECSS-CCCEECT
T ss_pred             EeCCC-ccCccch
Confidence            88766 5555543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.43  E-value=5.5e-13  Score=107.52  Aligned_cols=130  Identities=12%  Similarity=0.083  Sum_probs=94.3

Q ss_pred             CCCCCCCCCccEEecCCCCCccccCCccC---CeeEEecCCccCcccCccCCCCCCCCEEeCcCCccccccc-ccccCCC
Q 017542           12 FPQNIHFISSIKIDCYKCVNLREFPRISG---NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLS-TSICKLK   87 (369)
Q Consensus        12 ~p~~~~~~~L~~L~l~~~~~l~~~~~~~~---~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~   87 (369)
                      .|....+++|+.|++++|. +..++....   +|++|++++|.++.+ ..+..+++|++|++++|... .++ ..+..++
T Consensus        12 ~~~~~~~~~L~~L~l~~n~-l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~   88 (176)
T 1a9n_A           12 AAQYTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALP   88 (176)
T ss_dssp             SCEEECTTSCEEEECTTSC-CCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCT
T ss_pred             HHhcCCcCCceEEEeeCCC-CchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCccc-ccCcchhhcCC
Confidence            3444477888899998887 667664332   788888888888877 45788888888888887654 444 3347788


Q ss_pred             CCcEEecCCCcCCccCch--hhhccCccceeeccccccccccch----hhhcCCCCCeEeecCCC
Q 017542           88 SLRSLDLSYCINLESFPE--ILEKMELLEEINLEEASNIKELPS----SIENLEGLKQLKLTGCT  146 (369)
Q Consensus        88 ~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~  146 (369)
                      +|++|++++|.. ..++.  .+..+++|++|++++|... ..+.    .+..+++|+.|+++++.
T Consensus        89 ~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           89 DLTELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             TCCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             CCCEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence            888888888755 44554  6778888888888877654 3444    36778888888877653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.42  E-value=1.4e-12  Score=106.73  Aligned_cols=101  Identities=17%  Similarity=0.142  Sum_probs=60.9

Q ss_pred             eEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccc
Q 017542           43 VELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEAS  122 (369)
Q Consensus        43 ~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  122 (369)
                      +.++++++.++.+|..+.  ++|++|++++|.. +.+|..+..+++|++|++++|......+..+..+++|++|++++|.
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i-~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCC-CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcC-chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            456677777777765432  5677777777543 3555566667777777777765555445556666666666666555


Q ss_pred             cccccchhhhcCCCCCeEeecCCC
Q 017542          123 NIKELPSSIENLEGLKQLKLTGCT  146 (369)
Q Consensus       123 ~~~~~~~~~~~l~~L~~L~l~~~~  146 (369)
                      .....+..+..+++|+.|++++|.
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~  113 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGND  113 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCC
Confidence            444444445555555555555543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.41  E-value=3.4e-12  Score=102.93  Aligned_cols=127  Identities=18%  Similarity=0.154  Sum_probs=93.2

Q ss_pred             ccEEecCCCCCccccCCccC-CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCc
Q 017542           21 SIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCI   98 (369)
Q Consensus        21 L~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~   98 (369)
                      .+.++++++. +..+|.... +|++|+++++.++.++. .+..+++|++|++++|......+..+..+++|++|++++|.
T Consensus         9 ~~~l~~~~~~-l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~   87 (177)
T 2o6r_A            9 GTEIRCNSKG-LTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK   87 (177)
T ss_dssp             TTEEECCSSC-CSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEEEecCCC-CccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence            4678888777 777776554 88888888888887765 45778888888888876554444456778888888888876


Q ss_pred             CCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCC
Q 017542           99 NLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKL  148 (369)
Q Consensus        99 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  148 (369)
                      .....+..+..+++|++|++++|......+..+..+++|++|++++|...
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence            66555556778888888888877654433344577888888888886543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.39  E-value=7e-13  Score=118.06  Aligned_cols=230  Identities=15%  Similarity=0.069  Sum_probs=128.7

Q ss_pred             CeeEEecCCccCc-ccCccCCC-CCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhc--------c
Q 017542           41 NVVELNLMCTPIE-EVPLSIEC-LPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEK--------M  110 (369)
Q Consensus        41 ~L~~L~l~~~~~~-~l~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--------l  110 (369)
                      +++.|.++++--. ++. .+.. +++|++|||++|........ -+.++.++.+.+..+   ......|..        |
T Consensus        26 ~l~~L~l~g~i~~~~~~-~l~~~l~~L~~LdLs~n~i~~~~~~-~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~  100 (329)
T 3sb4_A           26 SITHLTLTGKLNAEDFR-HLRDEFPSLKVLDISNAEIKMYSGK-AGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGK  100 (329)
T ss_dssp             HCSEEEEEEEECHHHHH-HHHHSCTTCCEEEEEEEEECCEEES-SSSSGGGCCEEECTT---EECTTTTEEEETTEEEEC
T ss_pred             ceeEEEEeccccHHHHH-HHHHhhccCeEEecCcceeEEecCc-ccccccccccccccc---ccCHHHhccccccccccc
Confidence            7888888654211 221 1222 78999999999765511000 111222333443332   122344556        7


Q ss_pred             CccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCccc----CCCC-CcccccCCCCc
Q 017542          111 ELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLA----IPQA-PSSIVDLNKLE  185 (369)
Q Consensus       111 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~----~~~~-~~~l~~~~~L~  185 (369)
                      ++|+++++.+ ........+|.++++|+.+++.++......+..+..+.++..+......    ...+ ...+..+..|+
T Consensus       101 ~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~  179 (329)
T 3sb4_A          101 QTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLE  179 (329)
T ss_dssp             TTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCE
T ss_pred             CCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccc
Confidence            8888888875 3333334567778888888887755444344456666656555544321    1111 12334444454


Q ss_pred             -EEeec-------------------------CCCCCCCC-ccccCCCCCcEEeccCCCCccCCCC-CCCCCCCCEEEccC
Q 017542          186 -TLSLF-------------------------ECRGLVLP-PLLSGLSSLKKLELGDCEIMEIPPD-IGCLSSLESLNLSG  237 (369)
Q Consensus       186 -~L~l~-------------------------~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~  237 (369)
                       .+.+.                         +.-..... .....+++|+.+++++|.+..++.. +..+.+|+++++.+
T Consensus       180 ~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~  259 (329)
T 3sb4_A          180 TTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPH  259 (329)
T ss_dssp             EEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCT
T ss_pred             eeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCc
Confidence             23332                         21100000 0011367899999998888886654 67788999999988


Q ss_pred             CcCCccc-hhhccCCcCc-EecccCCcccccCCC----CCcccceecc
Q 017542          238 NNIESLP-TSISQLSRLR-WLYLVNCVKLQSLPE----LPLLLVMLGA  279 (369)
Q Consensus       238 ~~l~~~~-~~~~~~~~L~-~L~l~~~~~l~~~~~----~~~~L~~L~l  279 (369)
                      | ++.++ .++.++++|+ .+++.+  .++.++.    ...+|+.+++
T Consensus       260 n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l  304 (329)
T 3sb4_A          260 N-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLA  304 (329)
T ss_dssp             T-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEE
T ss_pred             c-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEe
Confidence            7 77666 4568888898 888876  5666553    1244555554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.38  E-value=4e-12  Score=102.48  Aligned_cols=129  Identities=19%  Similarity=0.114  Sum_probs=73.9

Q ss_pred             eeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeecccc
Q 017542           42 VVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEA  121 (369)
Q Consensus        42 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  121 (369)
                      .+.+++++++++.+|..+  .++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++++|
T Consensus         9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            356677777777777433  367778888776654433344566777777777776554444445566777777777765


Q ss_pred             ccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCC
Q 017542          122 SNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIP  172 (369)
Q Consensus       122 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  172 (369)
                      ......+..+..+++|++|++++|......+..+..+++|++|++++|.+.
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence            544333334555666666666664332222222344455555555554443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.37  E-value=7.2e-11  Score=107.55  Aligned_cols=229  Identities=10%  Similarity=0.093  Sum_probs=137.0

Q ss_pred             CCccEEecCCCCCccccCCc-cC--CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcccccccccccCCCCCcEEec
Q 017542           19 ISSIKIDCYKCVNLREFPRI-SG--NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDL   94 (369)
Q Consensus        19 ~~L~~L~l~~~~~l~~~~~~-~~--~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l   94 (369)
                      ..++.+.+-+.  ++.++.. +.  +|+.+.+..+ ++.+.. .|.+ .+|+.+.+.. .....-...|.+|.+|+.+++
T Consensus       113 ~~l~~i~ip~~--i~~I~~~aF~~~~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l  187 (401)
T 4fdw_A          113 KGYNEIILPNS--VKSIPKDAFRNSQIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADL  187 (401)
T ss_dssp             SSCSEEECCTT--CCEECTTTTTTCCCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred             CCccEEEECCc--cCEehHhhcccCCccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence            44555555442  4444421 22  6777777544 555554 3444 3677777765 222222345677777777777


Q ss_pred             CCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCC-cccCCCcchhhhccCcccCCC
Q 017542           95 SYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLP-ESLGNLKSLERLHAGLLAIPQ  173 (369)
Q Consensus        95 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~  173 (369)
                      ..+.........+. +.+|+.+.+.. ........+|.++++|+.+.+..+  +..++ ..+.. .+|+.+.+. +.+..
T Consensus       188 ~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp-~~i~~  261 (401)
T 4fdw_A          188 SKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLP-NGVTN  261 (401)
T ss_dssp             TTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEE-TTCCE
T ss_pred             CCCcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeC-CCccE
Confidence            76544333333444 57777777763 222233456777777777777652  33332 23444 567777763 33443


Q ss_pred             C-CcccccCCCCcEEeecCCCCC-----CCC-ccccCCCCCcEEeccCCCCccCC-CCCCCCCCCCEEEccCCcCCccc-
Q 017542          174 A-PSSIVDLNKLETLSLFECRGL-----VLP-PLLSGLSSLKKLELGDCEIMEIP-PDIGCLSSLESLNLSGNNIESLP-  244 (369)
Q Consensus       174 ~-~~~l~~~~~L~~L~l~~~~~~-----~~~-~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~-  244 (369)
                      + ...|..|++|+.+.+.++...     .++ ..|.+|++|+.+.+.+ .+..+. ..+..|.+|+.+.+..+ ++.+. 
T Consensus       262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~  339 (401)
T 4fdw_A          262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINF  339 (401)
T ss_dssp             ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECT
T ss_pred             EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcH
Confidence            3 346777888888888776543     233 4677888888888874 355543 34667788888888554 66554 


Q ss_pred             hhhccCCcCcEecccCC
Q 017542          245 TSISQLSRLRWLYLVNC  261 (369)
Q Consensus       245 ~~~~~~~~L~~L~l~~~  261 (369)
                      .++..+ +|+.+++.++
T Consensus       340 ~aF~~~-~L~~l~l~~n  355 (401)
T 4fdw_A          340 SAFNNT-GIKEVKVEGT  355 (401)
T ss_dssp             TSSSSS-CCCEEEECCS
T ss_pred             HhCCCC-CCCEEEEcCC
Confidence            456777 8888888877

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.33  E-value=8.4e-15  Score=120.63  Aligned_cols=80  Identities=24%  Similarity=0.211  Sum_probs=37.5

Q ss_pred             hhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCC--CCCCCCCCCEEEccCC
Q 017542          161 LERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPP--DIGCLSSLESLNLSGN  238 (369)
Q Consensus       161 L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~  238 (369)
                      |++|++++|.+..+|..+..+++|+.|++++|....++ .+..+++|+.|++++|.+..++.  .+..+++|++|++++|
T Consensus        72 L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N  150 (198)
T 1ds9_A           72 LRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             CCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred             CCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence            33333333333333333333444555555555444433 23444555555555555554322  3445556666666666


Q ss_pred             cCC
Q 017542          239 NIE  241 (369)
Q Consensus       239 ~l~  241 (369)
                      .++
T Consensus       151 ~l~  153 (198)
T 1ds9_A          151 PLY  153 (198)
T ss_dssp             HHH
T ss_pred             ccc
Confidence            554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.30  E-value=3.7e-10  Score=102.87  Aligned_cols=207  Identities=12%  Similarity=0.112  Sum_probs=102.1

Q ss_pred             CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCccccccc-ccccCCCCCcEEecCCCcCCccCchhhhccCccceeec
Q 017542           41 NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLS-TSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINL  118 (369)
Q Consensus        41 ~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  118 (369)
                      .++.+.+.. .++.++. .|.++ +|+.+.+..+  +..++ ..|.+ .+|+.+.+.. .....-...|..|++|+.+++
T Consensus       114 ~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l  187 (401)
T 4fdw_A          114 GYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADL  187 (401)
T ss_dssp             SCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred             CccEEEECC-ccCEehHhhcccC-CccEEEeCCC--ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence            444444432 2344433 34443 5666666542  33332 23444 3566666654 233333355666666666666


Q ss_pred             cccccccccchhhhcCCCCCeEeecCCCCCCCC-CcccCCCcchhhhccCcccCCCCCc-ccccCCCCcEEeecCCCCCC
Q 017542          119 EEASNIKELPSSIENLEGLKQLKLTGCTKLGSL-PESLGNLKSLERLHAGLLAIPQAPS-SIVDLNKLETLSLFECRGLV  196 (369)
Q Consensus       119 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~  196 (369)
                      .++........+|. +.+|+.+.+.. . +..+ ...+..+++|+.+.+..+ +..+.. .|.. .+|+.+.+..+ ...
T Consensus       188 ~~n~l~~I~~~aF~-~~~L~~l~lp~-~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~-i~~  261 (401)
T 4fdw_A          188 SKTKITKLPASTFV-YAGIEEVLLPV-T-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNG-VTN  261 (401)
T ss_dssp             TTSCCSEECTTTTT-TCCCSEEECCT-T-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETT-CCE
T ss_pred             CCCcceEechhhEe-ecccCEEEeCC-c-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCC-ccE
Confidence            64432222222333 45666666653 2 2222 234556666666666543 232222 2333 56666666332 223


Q ss_pred             C-CccccCCCCCcEEeccCCCCc-----cC-CCCCCCCCCCCEEEccCCcCCccc-hhhccCCcCcEecccC
Q 017542          197 L-PPLLSGLSSLKKLELGDCEIM-----EI-PPDIGCLSSLESLNLSGNNIESLP-TSISQLSRLRWLYLVN  260 (369)
Q Consensus       197 ~-~~~~~~~~~L~~L~l~~~~~~-----~~-~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~  260 (369)
                      + ...|.++++|+.+.+.++...     .+ ...+..|++|+.+++.+ .++.++ ..+.+|++|+.+.+..
T Consensus       262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~  332 (401)
T 4fdw_A          262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPA  332 (401)
T ss_dssp             ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECT
T ss_pred             EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECc
Confidence            3 235566666666666665543     22 22355666666666663 355444 3445566666666643

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.27  E-value=1.9e-14  Score=118.48  Aligned_cols=110  Identities=18%  Similarity=0.214  Sum_probs=59.0

Q ss_pred             hhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCc
Q 017542          106 ILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLE  185 (369)
Q Consensus       106 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~  185 (369)
                      .+..+++|++|++++|.. ..+| .+..+++|+.|++++|. +..+|..+..+++|++|++++|.+..++ .+..+++|+
T Consensus        43 ~~~~l~~L~~L~ls~n~l-~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~  118 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNI-EKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLR  118 (198)
T ss_dssp             HHHHTTTCSEEECSEEEE-SCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSS
T ss_pred             HHhcCCCCCEEECCCCCC-cccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCC
Confidence            444444444444443332 2233 34444455555554432 2233433344455555555555555443 455566777


Q ss_pred             EEeecCCCCCCCCc--cccCCCCCcEEeccCCCCcc
Q 017542          186 TLSLFECRGLVLPP--LLSGLSSLKKLELGDCEIME  219 (369)
Q Consensus       186 ~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~  219 (369)
                      .|++++|....++.  .+..+++|+.|++++|.+..
T Consensus       119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A          119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred             EEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence            77777776555443  56677778888888777655

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.23  E-value=5.5e-11  Score=95.07  Aligned_cols=102  Identities=19%  Similarity=0.134  Sum_probs=65.3

Q ss_pred             ccEEecCCCCCccccCCccC-CeeEEecCCccCccc-CccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCc
Q 017542           21 SIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEV-PLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCI   98 (369)
Q Consensus        21 L~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~   98 (369)
                      .+.++++++. +..+|..+. +|++|++++|.++.+ +..+..+++|++|++++|......+..+..+++|++|++++|.
T Consensus        11 ~~~l~~s~n~-l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~   89 (170)
T 3g39_A           11 GTTVDCSGKS-LASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ   89 (170)
T ss_dssp             TTEEECTTSC-CSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEEEeCCCC-cCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence            4567777766 666775544 777777777777766 3456677777777777765443333445667777777777765


Q ss_pred             CCccCchhhhccCccceeecccccc
Q 017542           99 NLESFPEILEKMELLEEINLEEASN  123 (369)
Q Consensus        99 ~~~~~~~~~~~l~~L~~L~l~~~~~  123 (369)
                      .....+..+..+++|++|++++|+.
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           90 LKSIPRGAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             cCEeCHHHhcCCCCCCEEEeCCCCC
Confidence            5444444566677777777766543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.19  E-value=1.1e-10  Score=93.71  Aligned_cols=101  Identities=20%  Similarity=0.145  Sum_probs=63.1

Q ss_pred             cEEecCCCCCccccCCccC-CeeEEecCCccCccc-CccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcC
Q 017542           22 IKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEV-PLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCIN   99 (369)
Q Consensus        22 ~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   99 (369)
                      +.++++++. +..+|..+. +|++|++++|.++.+ +..+..+++|++|++++|......+..+.++++|++|++++|..
T Consensus        15 ~~l~~~~n~-l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l   93 (174)
T 2r9u_A           15 TLVNCQNIR-LASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL   93 (174)
T ss_dssp             SEEECCSSC-CSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             cEEEeCCCC-CCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence            567777766 677776544 777777777777765 34566777777777777644433233346677777777777654


Q ss_pred             CccCchhhhccCccceeecccccc
Q 017542          100 LESFPEILEKMELLEEINLEEASN  123 (369)
Q Consensus       100 ~~~~~~~~~~l~~L~~L~l~~~~~  123 (369)
                      ....+..+..+++|++|++++|+.
T Consensus        94 ~~l~~~~~~~l~~L~~L~L~~N~~  117 (174)
T 2r9u_A           94 KSIPRGAFDNLKSLTHIYLYNNPW  117 (174)
T ss_dssp             CCCCTTTTTTCTTCSEEECCSSCB
T ss_pred             ceeCHHHhccccCCCEEEeCCCCc
Confidence            433334466666666666666543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.19  E-value=1.1e-10  Score=93.25  Aligned_cols=106  Identities=16%  Similarity=0.121  Sum_probs=84.3

Q ss_pred             CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccc
Q 017542           41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE  120 (369)
Q Consensus        41 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  120 (369)
                      ..+.++++++.++.+|..+  .++|++|++++|......+..+.++++|++|++++|......+..+..+++|++|++++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            4567899999999988755  37899999999877666677788899999999999876655556678899999999998


Q ss_pred             cccccccchhhhcCCCCCeEeecCCCCC
Q 017542          121 ASNIKELPSSIENLEGLKQLKLTGCTKL  148 (369)
Q Consensus       121 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~  148 (369)
                      |......+..+..+++|++|++++|...
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            7655544556888889999999886543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.17  E-value=1.7e-10  Score=92.49  Aligned_cols=104  Identities=15%  Similarity=0.125  Sum_probs=80.4

Q ss_pred             eeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeecccc
Q 017542           42 VVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEA  121 (369)
Q Consensus        42 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  121 (369)
                      -+.++++++.++.+|..+.  ++|++|++++|......+..+.++++|++|++++|......+..+..+++|++|++++|
T Consensus        14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            3678889999998887554  78999999998766666777888999999999997655544455688899999999877


Q ss_pred             ccccccchhhhcCCCCCeEeecCCCC
Q 017542          122 SNIKELPSSIENLEGLKQLKLTGCTK  147 (369)
Q Consensus       122 ~~~~~~~~~~~~l~~L~~L~l~~~~~  147 (369)
                      ......+..+..+++|++|++++|..
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~  117 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPW  117 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCc
Confidence            65544444577888888888888653

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.02  E-value=2.2e-09  Score=97.86  Aligned_cols=39  Identities=23%  Similarity=0.210  Sum_probs=19.6

Q ss_pred             hhhhccCccceeeccccccccccchhhhcCCCCCeEeecC
Q 017542          105 EILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTG  144 (369)
Q Consensus       105 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  144 (369)
                      ..+..|++|+.+.+.++ .......+|.++.+|+.+.+..
T Consensus       156 ~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~  194 (394)
T 4fs7_A          156 EAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPR  194 (394)
T ss_dssp             TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred             hhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCC
Confidence            34555666666666522 1222233455566666665543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.98  E-value=1.2e-11  Score=111.62  Aligned_cols=60  Identities=20%  Similarity=0.231  Sum_probs=28.7

Q ss_pred             cCCCCCcEEeccCCCCcc-----CCCCCCCCCCCCEEEccCCcCCc-----cchhhccCCcCcEecccCC
Q 017542          202 SGLSSLKKLELGDCEIME-----IPPDIGCLSSLESLNLSGNNIES-----LPTSISQLSRLRWLYLVNC  261 (369)
Q Consensus       202 ~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~  261 (369)
                      ...++|++|++++|.+.+     +...+...++|++|++++|.+++     +...+..+++|++|++++|
T Consensus       180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N  249 (372)
T 3un9_A          180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN  249 (372)
T ss_dssp             HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred             hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence            344455555555555443     12223334455555555555542     2223334455555555555

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.96  E-value=2.3e-11  Score=109.71  Aligned_cols=84  Identities=18%  Similarity=0.101  Sum_probs=54.0

Q ss_pred             cchhhhccCcccCCC-----CCcccccCCCCcEEeecCCCCCC-----CCccccCCCCCcEEeccCCCCcc-----CCCC
Q 017542          159 KSLERLHAGLLAIPQ-----APSSIVDLNKLETLSLFECRGLV-----LPPLLSGLSSLKKLELGDCEIME-----IPPD  223 (369)
Q Consensus       159 ~~L~~L~l~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~-----~~~~  223 (369)
                      ++|++|++++|.++.     ++..+...++|++|++++|....     +...+...++|+.|++++|.+.+     +...
T Consensus       155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~  234 (372)
T 3un9_A          155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA  234 (372)
T ss_dssp             CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred             CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence            445555555554431     22334556778888888877432     23445666788888888888865     2233


Q ss_pred             CCCCCCCCEEEccCCcCCc
Q 017542          224 IGCLSSLESLNLSGNNIES  242 (369)
Q Consensus       224 ~~~~~~L~~L~l~~~~l~~  242 (369)
                      +...++|++|++++|.+++
T Consensus       235 L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          235 AREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHCSSCCEEECTTSSCCH
T ss_pred             HHhCCCCCEEeccCCCCCH
Confidence            4456789999999998873

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.89  E-value=1.3e-07  Score=86.00  Aligned_cols=102  Identities=18%  Similarity=0.094  Sum_probs=49.3

Q ss_pred             cCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCC-CCCCCCCCCCEE
Q 017542          155 LGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIP-PDIGCLSSLESL  233 (369)
Q Consensus       155 ~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L  233 (369)
                      +..+..++.+.+..+...-....+..+..++.........  ....+..+.+|+.+.+..+ +..+. ..+..+.+|+.+
T Consensus       249 f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i--~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i  325 (394)
T 4fs7_A          249 FYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIV--PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSI  325 (394)
T ss_dssp             TTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEE--CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEE
T ss_pred             ccccccceeEEcCCCcceeeccccccccccceeccCceee--ccccccccccccccccccc-cceechhhhcCCCCCCEE
Confidence            3444555555544433222223344455555554433221  1123455666666666543 33332 235556666666


Q ss_pred             EccCCcCCccc-hhhccCCcCcEecccC
Q 017542          234 NLSGNNIESLP-TSISQLSRLRWLYLVN  260 (369)
Q Consensus       234 ~l~~~~l~~~~-~~~~~~~~L~~L~l~~  260 (369)
                      ++..+ ++.+. .++.+|.+|+.+++..
T Consensus       326 ~lp~~-v~~I~~~aF~~c~~L~~i~lp~  352 (394)
T 4fs7_A          326 DLPYL-VEEIGKRSFRGCTSLSNINFPL  352 (394)
T ss_dssp             CCCTT-CCEECTTTTTTCTTCCEECCCT
T ss_pred             EeCCc-ccEEhHHhccCCCCCCEEEECc
Confidence            66533 55443 3455666666666643

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.87  E-value=9.9e-09  Score=91.82  Aligned_cols=100  Identities=16%  Similarity=0.146  Sum_probs=67.0

Q ss_pred             EEecCCCCCccccCCccC---CeeEEecCC-ccCcccCc-cCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCC
Q 017542           23 KIDCYKCVNLREFPRISG---NVVELNLMC-TPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYC   97 (369)
Q Consensus        23 ~L~l~~~~~l~~~~~~~~---~L~~L~l~~-~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~   97 (369)
                      .++++++..+..+|. ++   +|++|++++ |.++.++. .+..+++|++|+|++|...+..+..|.++++|++|+|++|
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            456766623777777 54   578888874 77777663 5777788888888877655555556777788888888876


Q ss_pred             cCCccCchhhhccCccceeeccccccc
Q 017542           98 INLESFPEILEKMELLEEINLEEASNI  124 (369)
Q Consensus        98 ~~~~~~~~~~~~l~~L~~L~l~~~~~~  124 (369)
                      ......+..+..++ |++|++.+|...
T Consensus        91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           91 ALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            55544444444444 777777766543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.85  E-value=7.8e-09  Score=92.48  Aligned_cols=102  Identities=22%  Similarity=0.194  Sum_probs=71.6

Q ss_pred             eEeecCCCCCCCCCcccCCCcchhhhccCc-ccCCCCC-cccccCCCCcEEeecCCCCCCCCc-cccCCCCCcEEeccCC
Q 017542          139 QLKLTGCTKLGSLPESLGNLKSLERLHAGL-LAIPQAP-SSIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDC  215 (369)
Q Consensus       139 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~  215 (369)
                      .++.++++.+..+|. +..+++|++|++++ |.+..++ ..|..+++|+.|++++|.+..++. .|.++++|+.|+|++|
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            455555435666777 77777888888875 7777666 457777888888888887665543 5677788888888888


Q ss_pred             CCccCCCCCCCCCCCCEEEccCCcCC
Q 017542          216 EIMEIPPDIGCLSSLESLNLSGNNIE  241 (369)
Q Consensus       216 ~~~~~~~~~~~~~~L~~L~l~~~~l~  241 (369)
                      .+..++........|++|++.+|.+.
T Consensus        91 ~l~~~~~~~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           91 ALESLSWKTVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ccceeCHHHcccCCceEEEeeCCCcc
Confidence            88776655433334888888887766

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.81  E-value=5.8e-07  Score=81.77  Aligned_cols=81  Identities=14%  Similarity=0.205  Sum_probs=43.9

Q ss_pred             ccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCC-CCCCCCCCCEEEccCCcCCccc-hhhccCCcCc
Q 017542          177 SIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPP-DIGCLSSLESLNLSGNNIESLP-TSISQLSRLR  254 (369)
Q Consensus       177 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~  254 (369)
                      .|..+..|+.+.+......--...+.++++|+.+.+.. .+..++. .+.+|.+|+.++|..+ ++.+. .++.+|.+|+
T Consensus       260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~  337 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE  337 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred             eeeecccccEEecccccceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence            34556666666665443222223455666677666642 2333332 3555666777766543 44443 3456666676


Q ss_pred             Eeccc
Q 017542          255 WLYLV  259 (369)
Q Consensus       255 ~L~l~  259 (369)
                      .+.+.
T Consensus       338 ~i~ip  342 (394)
T 4gt6_A          338 RIAIP  342 (394)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            66664

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.76  E-value=8.4e-09  Score=92.31  Aligned_cols=132  Identities=23%  Similarity=0.392  Sum_probs=72.7

Q ss_pred             cchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCC-Cccc--ccCCCCcEEeecCCC---CC-----
Q 017542          127 LPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQA-PSSI--VDLNKLETLSLFECR---GL-----  195 (369)
Q Consensus       127 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~l--~~~~~L~~L~l~~~~---~~-----  195 (369)
                      +...+..+++|++|.++++.... ++. + .+++|++|++..+.+..- ...+  ..+++|++|+++.+.   ..     
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~  240 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN  240 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred             HHHHHhcCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence            33445566677777776653221 222 2 256666666665554311 1112  246777777775321   11     


Q ss_pred             CCCccc--cCCCCCcEEeccCCCCcc-CCC---CCCCCCCCCEEEccCCcCCc-----cchhhccCCcCcEecccCC
Q 017542          196 VLPPLL--SGLSSLKKLELGDCEIME-IPP---DIGCLSSLESLNLSGNNIES-----LPTSISQLSRLRWLYLVNC  261 (369)
Q Consensus       196 ~~~~~~--~~~~~L~~L~l~~~~~~~-~~~---~~~~~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~  261 (369)
                      .+...+  ..+++|+.|.+.+|.+.. ...   ....+++|++|+|+.|.+.+     ++..+..+++|+.|++++|
T Consensus       241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN  317 (362)
T ss_dssp             GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred             HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence            111112  246788888888777654 100   11346778888888887763     3334456778888888777

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.71  E-value=1.6e-06  Score=78.84  Aligned_cols=60  Identities=13%  Similarity=0.185  Sum_probs=36.3

Q ss_pred             cccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccc-hhhccCCcCcEecccC
Q 017542          200 LLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLP-TSISQLSRLRWLYLVN  260 (369)
Q Consensus       200 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~  260 (369)
                      .|..+..|+.+.+......--...+..++.|+.+.+. +.++.++ ..+.+|.+|+.+++..
T Consensus       260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~  320 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPE  320 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT
T ss_pred             eeeecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCC
Confidence            4566677777777554332223345667777777775 3455554 3456677777777754

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.64  E-value=6.2e-09  Score=93.16  Aligned_cols=81  Identities=10%  Similarity=0.151  Sum_probs=53.5

Q ss_pred             cCCCCcEEeecCCCCCC-CCc---cccCCCCCcEEeccCCCCcc-----CCCCCCCCCCCCEEEccCCcCCcc-chhhcc
Q 017542          180 DLNKLETLSLFECRGLV-LPP---LLSGLSSLKKLELGDCEIME-----IPPDIGCLSSLESLNLSGNNIESL-PTSISQ  249 (369)
Q Consensus       180 ~~~~L~~L~l~~~~~~~-~~~---~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~  249 (369)
                      .+++|+.|++.+|.... ...   ....+++|++|+++.|.+.+     +...+..+++|+.|++++|.+++- -..+..
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~  329 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK  329 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence            46889999998887432 111   11346889999999998876     334445678999999999987732 222222


Q ss_pred             -CCcCcEecccCCc
Q 017542          250 -LSRLRWLYLVNCV  262 (369)
Q Consensus       250 -~~~L~~L~l~~~~  262 (369)
                       +  ...++++.+.
T Consensus       330 al--g~~~~~~~~~  341 (362)
T 2ra8_A          330 SL--PMKIDVSDSQ  341 (362)
T ss_dssp             HC--CSEEECCSBC
T ss_pred             Hc--CCEEEecCCc
Confidence             2  3567777664

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.60  E-value=7.2e-06  Score=74.04  Aligned_cols=103  Identities=16%  Similarity=0.170  Sum_probs=57.2

Q ss_pred             CCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCC-CccccCCCCCcEEeccCCCCccCC-CCCCCCCCCCEE
Q 017542          156 GNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVL-PPLLSGLSSLKKLELGDCEIMEIP-PDIGCLSSLESL  233 (369)
Q Consensus       156 ~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L  233 (369)
                      ..+.+++.+.+..+-..-....+..+..|+.+.+..+- ..+ ...+..+.+|+.+.+..+ +..++ ..+..+.+|+.+
T Consensus       214 ~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~v-~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i  291 (379)
T 4h09_A          214 SYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKNV-TSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKV  291 (379)
T ss_dssp             TTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTTC-CEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEE
T ss_pred             ccccccceeeeccceeEEccccccCCccceEEEcCCCc-cEeCccccceeehhcccccccc-ceeccccccccccccccc
Confidence            33444544444332111112345556677777765442 222 234566677777777543 33332 335667777777


Q ss_pred             EccCCcCCccc-hhhccCCcCcEecccC
Q 017542          234 NLSGNNIESLP-TSISQLSRLRWLYLVN  260 (369)
Q Consensus       234 ~l~~~~l~~~~-~~~~~~~~L~~L~l~~  260 (369)
                      .+.++.++.++ ..+.+|.+|+.+.+..
T Consensus       292 ~l~~~~i~~I~~~aF~~c~~L~~i~lp~  319 (379)
T 4h09_A          292 VMDNSAIETLEPRVFMDCVKLSSVTLPT  319 (379)
T ss_dssp             EECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred             cccccccceehhhhhcCCCCCCEEEcCc
Confidence            77777777665 4556777777777743

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.53  E-value=6.9e-09  Score=82.00  Aligned_cols=23  Identities=13%  Similarity=0.092  Sum_probs=15.5

Q ss_pred             cccCCCCCcEEEecCccCcchhh
Q 017542          313 RLSKHMSPVQLIFANCLKLNESI  335 (369)
Q Consensus       313 ~~~~~~~~~~~~~~~c~~l~~~~  335 (369)
                      .+.....+..+.+++|+++++..
T Consensus       134 ~L~~~~~L~~L~L~~c~~Itd~g  156 (176)
T 3e4g_A          134 ALHHFRNLKYLFLSDLPGVKEKE  156 (176)
T ss_dssp             HGGGCTTCCEEEEESCTTCCCHH
T ss_pred             HHhcCCCCCEEECCCCCCCCchH
Confidence            33334445578888999998754

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.52  E-value=9.8e-06  Score=73.16  Aligned_cols=247  Identities=13%  Similarity=0.110  Sum_probs=142.3

Q ss_pred             CccCCCCC--CCCCccEEecCCCCCccccCCc-cC--CeeEEecCCccCcccCccCCCCCCCCEEeCcCCccccccc-cc
Q 017542            9 LRCFPQNI--HFISSIKIDCYKCVNLREFPRI-SG--NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLS-TS   82 (369)
Q Consensus         9 l~~~p~~~--~~~~L~~L~l~~~~~l~~~~~~-~~--~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~   82 (369)
                      +++++...  .|.+|+.+++..+  +..+.+. +.  .|+.+.+.. .++.+........+|+.+.+..+  ...+. ..
T Consensus        57 vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c~l~~i~~~~-~l~~I~~~aF~~~~L~~i~lp~~--~~~i~~~~  131 (379)
T 4h09_A           57 ITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFADTKLQSYTGME-RVKKFGDYVFQGTDLDDFEFPGA--TTEIGNYI  131 (379)
T ss_dssp             EEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTCCCCEEEECT-TCCEECTTTTTTCCCSEEECCTT--CCEECTTT
T ss_pred             ccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCCCCceEECCc-eeeEeccceeccCCcccccCCCc--cccccccc
Confidence            44555543  7889999999643  5666542 22  677776643 35555543333347888888653  12222 22


Q ss_pred             ccCCCCCcEEecCCCcCCccCchhhhccCccceeecccccc-----------------------------------cccc
Q 017542           83 ICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASN-----------------------------------IKEL  127 (369)
Q Consensus        83 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-----------------------------------~~~~  127 (369)
                      +.. .+|+.+.+..+ ....-...+..+.+++.+.+.....                                   ....
T Consensus       132 F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  209 (379)
T 4h09_A          132 FYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKTVT  209 (379)
T ss_dssp             TTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCEEC
T ss_pred             ccc-ceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccceeEEe
Confidence            222 23444444331 1111222333344444333321110                                   1111


Q ss_pred             chhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCC-CcccccCCCCcEEeecCCCCCCCC-ccccCCC
Q 017542          128 PSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQA-PSSIVDLNKLETLSLFECRGLVLP-PLLSGLS  205 (369)
Q Consensus       128 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~  205 (369)
                      ...+..+.+++.+.+... ........+..+..|+.+.+..+ +..+ ...+..+.+|+.+.+... ...++ ..+..+.
T Consensus       210 ~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~  286 (379)
T 4h09_A          210 AYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCS  286 (379)
T ss_dssp             TTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCT
T ss_pred             ecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccc
Confidence            223445566777666541 11122234667788888887655 3333 245777889999998654 33333 4678899


Q ss_pred             CCcEEeccCCCCccCCC-CCCCCCCCCEEEccCCcCCccc-hhhccCCcCcEecccCCcccccCC
Q 017542          206 SLKKLELGDCEIMEIPP-DIGCLSSLESLNLSGNNIESLP-TSISQLSRLRWLYLVNCVKLQSLP  268 (369)
Q Consensus       206 ~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~l~~~~  268 (369)
                      +|+.+.+.++.+..+.. .+.+|.+|+.+.|..+ ++.+. .++.+|.+|+.+.+..+  ++.++
T Consensus       287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~--v~~I~  348 (379)
T 4h09_A          287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS--ITLIE  348 (379)
T ss_dssp             TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT--CCEEC
T ss_pred             ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc--cCEEc
Confidence            99999999888877543 4778999999999754 66665 46788999999988543  44443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.48  E-value=1.4e-07  Score=74.43  Aligned_cols=87  Identities=14%  Similarity=0.195  Sum_probs=45.1

Q ss_pred             CCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCcc-Cchhhhc----cCccceeeccccccccc-cchhhhcCCCC
Q 017542           64 NLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLES-FPEILEK----MELLEEINLEEASNIKE-LPSSIENLEGL  137 (369)
Q Consensus        64 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~----l~~L~~L~l~~~~~~~~-~~~~~~~l~~L  137 (369)
                      +|+.||+++|.....--..+.++++|++|++++|..+++ -...+..    +++|++|++++|..+++ .-..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            456666666553333333345566666666666654333 1122332    23566666666654442 22334556666


Q ss_pred             CeEeecCCCCCCC
Q 017542          138 KQLKLTGCTKLGS  150 (369)
Q Consensus       138 ~~L~l~~~~~~~~  150 (369)
                      ++|++++|..+++
T Consensus       142 ~~L~L~~c~~Itd  154 (176)
T 3e4g_A          142 KYLFLSDLPGVKE  154 (176)
T ss_dssp             CEEEEESCTTCCC
T ss_pred             CEEECCCCCCCCc
Confidence            6666666665544

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.27  E-value=1.1e-07  Score=76.88  Aligned_cols=83  Identities=14%  Similarity=0.118  Sum_probs=48.2

Q ss_pred             ccCCCCcEEeecCCCCCC-----CCccccCCCCCcEEeccCCCCcc-----CCCCCCCCCCCCEEEc--cCCcCCc----
Q 017542          179 VDLNKLETLSLFECRGLV-----LPPLLSGLSSLKKLELGDCEIME-----IPPDIGCLSSLESLNL--SGNNIES----  242 (369)
Q Consensus       179 ~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l--~~~~l~~----  242 (369)
                      ...++|++|++++|....     +...+...++|++|++++|.+.+     +...+...+.|++|++  ++|.+.+    
T Consensus        62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~  141 (185)
T 1io0_A           62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM  141 (185)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred             HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence            334556666666665321     22233444566777777776654     2334555667777777  6676662    


Q ss_pred             -cchhhccCCcCcEecccCC
Q 017542          243 -LPTSISQLSRLRWLYLVNC  261 (369)
Q Consensus       243 -~~~~~~~~~~L~~L~l~~~  261 (369)
                       +...+...++|++|++++|
T Consensus       142 ~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          142 EIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             HHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHhCCCcCEEeccCC
Confidence             3445556677777777776

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.24  E-value=8.5e-07  Score=71.52  Aligned_cols=105  Identities=15%  Similarity=0.125  Sum_probs=51.5

Q ss_pred             CeeEEecCCc-cCc-----ccCccCCCCCCCCEEeCcCCccccc----ccccccCCCCCcEEecCCCcCCcc----Cchh
Q 017542           41 NVVELNLMCT-PIE-----EVPLSIECLPNLETLEMSFCNSLKR----LSTSICKLKSLRSLDLSYCINLES----FPEI  106 (369)
Q Consensus        41 ~L~~L~l~~~-~~~-----~l~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~  106 (369)
                      .|++|+++++ .++     .+...+...++|++|+|++|.....    +...+...++|++|++++|.....    +...
T Consensus        37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~  116 (185)
T 1io0_A           37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA  116 (185)
T ss_dssp             TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred             CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHH
Confidence            5555555555 443     1223344455666666666544321    223334445666666666544332    2334


Q ss_pred             hhccCccceeec--cccccccc----cchhhhcCCCCCeEeecCC
Q 017542          107 LEKMELLEEINL--EEASNIKE----LPSSIENLEGLKQLKLTGC  145 (369)
Q Consensus       107 ~~~l~~L~~L~l--~~~~~~~~----~~~~~~~l~~L~~L~l~~~  145 (369)
                      +...+.|++|++  ++|.....    +...+...++|++|++++|
T Consensus       117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence            445555666666  44443321    2333444556666666554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.90  E-value=3.5e-06  Score=71.60  Aligned_cols=77  Identities=26%  Similarity=0.302  Sum_probs=46.7

Q ss_pred             cCCCCcEEeecCCCCCCCC---ccccCCCCCcEEeccCCCCccCCC--CCCCCCCCCEEEccCCcCC-ccc-------hh
Q 017542          180 DLNKLETLSLFECRGLVLP---PLLSGLSSLKKLELGDCEIMEIPP--DIGCLSSLESLNLSGNNIE-SLP-------TS  246 (369)
Q Consensus       180 ~~~~L~~L~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~l~-~~~-------~~  246 (369)
                      .+++|+.|++++|....++   ..+..+++|+.|++++|.+.++..  .+..+ +|++|++++|.+. .+|       ..
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHH
Confidence            4667777777777755443   344567777777777777766421  12223 6777777777665 232       23


Q ss_pred             hccCCcCcEec
Q 017542          247 ISQLSRLRWLY  257 (369)
Q Consensus       247 ~~~~~~L~~L~  257 (369)
                      +..+|+|+.||
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            45666666665

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.81  E-value=3.6e-05  Score=65.35  Aligned_cols=37  Identities=27%  Similarity=0.292  Sum_probs=15.6

Q ss_pred             CCCCcEEecCCCcCCc--cCchhhhccCccceeeccccc
Q 017542           86 LKSLRSLDLSYCINLE--SFPEILEKMELLEEINLEEAS  122 (369)
Q Consensus        86 ~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~  122 (369)
                      +++|+.|+|++|....  .++..+..+++|+.|++++|.
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~  207 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE  207 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc
Confidence            4444444444443322  222333444444444444433

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.76  E-value=0.00027  Score=56.74  Aligned_cols=34  Identities=12%  Similarity=0.078  Sum_probs=15.6

Q ss_pred             CCCCcEEeccCCCCcc-----CCCCCCCCCCCCEEEccC
Q 017542          204 LSSLKKLELGDCEIME-----IPPDIGCLSSLESLNLSG  237 (369)
Q Consensus       204 ~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~  237 (369)
                      -+.|+.|++++|.+..     +...+..-+.|++|+|++
T Consensus        97 N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A           97 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred             CCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence            3445555555555443     222233334455555554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.75  E-value=0.0014  Score=52.69  Aligned_cols=104  Identities=13%  Similarity=0.113  Sum_probs=52.6

Q ss_pred             CeeEEecCCc-cCc-----ccCccCCCCCCCCEEeCcCCccccc----ccccccCCCCCcEEecCCCcCCcc----Cchh
Q 017542           41 NVVELNLMCT-PIE-----EVPLSIECLPNLETLEMSFCNSLKR----LSTSICKLKSLRSLDLSYCINLES----FPEI  106 (369)
Q Consensus        41 ~L~~L~l~~~-~~~-----~l~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~  106 (369)
                      .|+.|+++++ .+.     .+-..+...+.|+.|+|++|...+.    +...+..-..|+.|+|++|.+...    +.+.
T Consensus        42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a  121 (197)
T 1pgv_A           42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS  121 (197)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred             CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence            5666666553 443     2233344556666666666654332    223334456666666666654432    2233


Q ss_pred             hhccCccceeecccccc--cc-----ccchhhhcCCCCCeEeecC
Q 017542          107 LEKMELLEEINLEEASN--IK-----ELPSSIENLEGLKQLKLTG  144 (369)
Q Consensus       107 ~~~l~~L~~L~l~~~~~--~~-----~~~~~~~~l~~L~~L~l~~  144 (369)
                      +..-+.|++|+++++..  ++     .+...+..-+.|++|+++.
T Consensus       122 L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~  166 (197)
T 1pgv_A          122 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF  166 (197)
T ss_dssp             TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence            44445566666653321  11     1333445556666666654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.72  E-value=0.0025  Score=47.60  Aligned_cols=52  Identities=23%  Similarity=0.342  Sum_probs=38.0

Q ss_pred             EEecCCCCCcc--ccCCccC-CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcc
Q 017542           23 KIDCYKCVNLR--EFPRISG-NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNS   75 (369)
Q Consensus        23 ~L~l~~~~~l~--~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~   75 (369)
                      .++.+++. +.  .+|..++ +|++|+|++|.++.++. .+..+++|++|+|++|.+
T Consensus        12 ~v~Cs~~~-L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRG-LTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSC-CCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCC-CccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            67777766 66  7776655 78888888888887765 356677788888777654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.24  E-value=0.01  Score=44.24  Aligned_cols=52  Identities=25%  Similarity=0.337  Sum_probs=27.1

Q ss_pred             EEeccCCCCc--cCCCCCCCCCCCCEEEccCCcCCccch-hhccCCcCcEecccCCc
Q 017542          209 KLELGDCEIM--EIPPDIGCLSSLESLNLSGNNIESLPT-SISQLSRLRWLYLVNCV  262 (369)
Q Consensus       209 ~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~  262 (369)
                      .++.++..++  .+|..  ..++|++|+|++|.|+.++. .+..+++|+.|+|.+|+
T Consensus        12 ~v~Cs~~~L~~~~vP~~--lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTA--FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             EEECCSSCCCTTTSCSC--CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             EEEeCCCCCccccCCCC--CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            4444454444  44432  12356666666666665553 33555666666666653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	369
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.001
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.001
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.003
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.004
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.3 bits (124), Expect = 2e-08
 Identities = 42/264 (15%), Positives = 90/264 (34%), Gaps = 37/264 (14%)

Query: 31  NLREFPR-ISGNVVELNLMCTPIEEVP-LSIECLPNLETLEMSFCNSLKRLSTSICKLKS 88
            L + P+ +  +   L+L    I E+     + L NL TL +      K    +   L  
Sbjct: 21  GLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK 80

Query: 89  LRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKL 148
           L  L LS    L+  PE + K      ++  E + +++   +  N   + +L        
Sbjct: 81  LERLYLSKN-QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 139

Query: 149 GSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPP--------- 199
           G    +   +K L  +      I   P  +     L  L L   +   +           
Sbjct: 140 GIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNL 197

Query: 200 ----------------LLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESL 243
                            L+    L++L L + +++++P  +     ++ + L  NNI ++
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAI 257

Query: 244 PTS-------ISQLSRLRWLYLVN 260
            ++        ++ +    + L +
Sbjct: 258 GSNDFCPPGYNTKKASYSGVSLFS 281

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.3 bits (111), Expect = 1e-06
 Identities = 39/232 (16%), Positives = 83/232 (35%), Gaps = 14/232 (6%)

Query: 41  NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINL 100
            +  L L    ++E+P  +        +  +    +++   +      +  L  +   + 
Sbjct: 80  KLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 139

Query: 101 ESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKS 160
                  + M+ L  I + + +NI  +P  +     L +L L G         SL  L +
Sbjct: 140 GIENGAFQGMKKLSYIRIAD-TNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNN 196

Query: 161 LERLHAGLLAIPQAPSSIVDLNK-LETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIME 219
           L +L     +I    +  +     L  L L   + + +P  L+    ++ + L +  I  
Sbjct: 197 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA 256

Query: 220 IPPDIGC-------LSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKL 264
           I  +  C        +S   ++L  N ++       Q S  R +Y+   V+L
Sbjct: 257 IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEI---QPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.5 bits (101), Expect = 2e-05
 Identities = 41/217 (18%), Positives = 82/217 (37%), Gaps = 5/217 (2%)

Query: 63  PNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEAS 122
           P+   L++      +        LK+L +L L      +  P     +  LE + L + +
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK-N 89

Query: 123 NIKELPSSI-ENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDL 181
            +KELP  + + L+ L+  +        S+   L  +  +E     L +      +   +
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 182 NKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPD-IGCLSSLESLNLSGNNI 240
            KL  + + +     +P  L    SL +L L   +I ++    +  L++L  L LS N+I
Sbjct: 150 KKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207

Query: 241 ESLPTSISQLSRLRWLYLVNCVKLQSLPELPLLLVML 277
            ++       +       +N  KL  +P        +
Sbjct: 208 SAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYI 244

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 22/139 (15%), Positives = 49/139 (35%), Gaps = 2/139 (1%)

Query: 184 LETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIMEIPPD-IGCLSSLESLNLSGNNIE 241
              L L   +   +       L +L  L L + +I +I P     L  LE L LS N ++
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 242 SLPTSISQLSRLRWLYLVNCVKLQSLPELPLLLVMLGASDCKRLQFLPELTSCLEELDAS 301
            LP  + +  +   ++     K++      L  +++       L+         + +   
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 152

Query: 302 ILQALSNRTGERLSKHMSP 320
               +++     + + + P
Sbjct: 153 SYIRIADTNITTIPQGLPP 171

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.9 bits (123), Expect = 5e-08
 Identities = 36/178 (20%), Positives = 68/178 (38%), Gaps = 10/178 (5%)

Query: 81  TSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQL 140
           T +  L +L  L L+         +I     L    +L+ A+N     + +  L  L +L
Sbjct: 213 TPLGILTNLDELSLNGN----QLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL 268

Query: 141 KLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPL 200
           KL         P       +            +  S I +L  L  L+L+      + P+
Sbjct: 269 KLGANQISNISPL---AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPV 325

Query: 201 LSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYL 258
            S L+ L++L   + ++      +  L+++  L+   N I  L   ++ L+R+  L L
Sbjct: 326 -SSLTKLQRLFFANNKV-SDVSSLANLTNINWLSAGHNQISDLT-PLANLTRITQLGL 380

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.6 bits (117), Expect = 3e-07
 Identities = 39/177 (22%), Positives = 64/177 (36%), Gaps = 9/177 (5%)

Query: 94  LSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPE 153
           L    N  S    L  +  L+E++L    N  +   ++ +L  L  L L         P 
Sbjct: 202 LIATNNQISDITPLGILTNLDELSLN--GNQLKDIGTLASLTNLTDLDLANNQISNLAP- 258

Query: 154 SLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELG 213
            L  L  L  L  G   I       +      T        L     +S L +L  L L 
Sbjct: 259 -LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLY 315

Query: 214 DCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPEL 270
              I +I P +  L+ L+ L  + N +  +  S++ L+ + WL   +  ++  L  L
Sbjct: 316 FNNISDISP-VSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHN-QISDLTPL 369

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.2 bits (116), Expect = 3e-07
 Identities = 44/198 (22%), Positives = 74/198 (37%), Gaps = 34/198 (17%)

Query: 41  NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINL 100
           N+ EL+L    ++++  ++  L NL  L+++  N +  L+  +  L  L  L L      
Sbjct: 220 NLDELSLNGNQLKDIG-TLASLTNLTDLDLA-NNQISNLA-PLSGLTKLTELKLGAN--- 273

Query: 101 ESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKS 160
                I     L    NLE   N  E  S I NL+ L  L L         P  + +L  
Sbjct: 274 -QISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTK 330

Query: 161 LERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEI 220
           L+RL                 NK+                L+ L+++  L  G  +I ++
Sbjct: 331 LQRLF-------------FANNKVSD-----------VSSLANLTNINWLSAGHNQISDL 366

Query: 221 PPDIGCLSSLESLNLSGN 238
            P +  L+ +  L L+  
Sbjct: 367 TP-LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 5e-04
 Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 201 LSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLY 257
            + L  +  L+     I  I   +  L++L  +N S N +  +   +  L++L  + 
Sbjct: 40  QTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDIL 94

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.1 bits (115), Expect = 4e-07
 Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 6/74 (8%)

Query: 181 LNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNI 240
              LE L++   + + LP L      L++L      + E+P       +L+ L++  N +
Sbjct: 283 PPSLEELNVSNNKLIELPALPP---RLERLIASFNHLAEVPE---LPQNLKQLHVEYNPL 336

Query: 241 ESLPTSISQLSRLR 254
              P     +  LR
Sbjct: 337 REFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 48.7 bits (114), Expect = 5e-07
 Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 5/85 (5%)

Query: 214 DCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPELPLL 273
           +    EI        SLE LN+S N +  LP    +L RL      +   L  +PELP  
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLI----ASFNHLAEVPELPQN 325

Query: 274 LVMLGASDCKRLQFLPELTSCLEEL 298
           L  L       L+  P++   +E+L
Sbjct: 326 LKQLHVEYNP-LREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 31/182 (17%), Positives = 52/182 (28%), Gaps = 29/182 (15%)

Query: 1   MIMAGCESLRCFPQNIHFISSIKIDCYKCVNLREFPRISGNVVELNLMCTPIEEVPLSIE 60
             +     L     + + + ++         L        ++ EL    T ++       
Sbjct: 198 PELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFS 257

Query: 61  CLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE 120
            L  L         S   + +      SL  L++S                         
Sbjct: 258 GLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN----------------------- 294

Query: 121 ASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVD 180
              + ELP+    LE   +L  +    L  +PE   NLK L   +  L   P  P S+ D
Sbjct: 295 --KLIELPALPPRLE---RLIASFN-HLAEVPELPQNLKQLHVEYNPLREFPDIPESVED 348

Query: 181 LN 182
           L 
Sbjct: 349 LR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 3/68 (4%)

Query: 205 SSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKL 264
               +LEL +  +  +P        LESL  S N++  LP     L  L           
Sbjct: 38  RQAHELELNNLGLSSLPELPP---HLESLVASCNSLTELPELPQSLKSLLVDNNNLKALS 94

Query: 265 QSLPELPL 272
              P L  
Sbjct: 95  DLPPLLEY 102

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 44.4 bits (103), Expect = 1e-05
 Identities = 14/50 (28%), Positives = 18/50 (36%)

Query: 219 EIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLP 268
            +P  +  L  L SLN+S NN+         L R       N   L   P
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.3 bits (90), Expect = 4e-04
 Identities = 10/43 (23%), Positives = 15/43 (34%)

Query: 197 LPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNN 239
           LP  L+ L  L  L +    +    P  G L   +    + N 
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 51/242 (21%), Positives = 92/242 (38%), Gaps = 7/242 (2%)

Query: 39  SGNVVELNLMC---TPIEEVPLSIECLPNLETLEMSFCNSL-KRLSTSICKLKSLRSLDL 94
           +  V  L+L          +P S+  LP L  L +   N+L   +  +I KL  L  L +
Sbjct: 49  TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108

Query: 95  SYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPES 154
           ++     + P+ L +++ L  ++    +    LP SI +L  L  +   G    G++P+S
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168

Query: 155 LGNLKSLERLHAGLLA--IPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLEL 212
            G+   L             + P +  +LN                 L     + +K+ L
Sbjct: 169 YGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228

Query: 213 GDCEIMEIPPDIGCLSSLESLNLSGNNIE-SLPTSISQLSRLRWLYLVNCVKLQSLPELP 271
               +      +G   +L  L+L  N I  +LP  ++QL  L  L +        +P+  
Sbjct: 229 AKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288

Query: 272 LL 273
            L
Sbjct: 289 NL 290

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 1e-04
 Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 202 SGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLP-TSISQLSRLRWLYLVN 260
           S ++S  ++      +  +PPD+        L+LS N + +    ++   +RL  L L  
Sbjct: 7   SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 261 C 261
            
Sbjct: 65  A 65

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 32/200 (16%), Positives = 65/200 (32%), Gaps = 3/200 (1%)

Query: 39  SGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCI 98
             + +E+N     +  +P  +    +   L +S          ++     L  L+L    
Sbjct: 9   VASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

Query: 99  NLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNL 158
             +   +    +    +++  +  ++  L  ++  L  L        +        LG L
Sbjct: 67  LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126

Query: 159 KSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIM 218
           + L      L  +P    +     +  +L+      L    LL+GL +L  L L +  + 
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL-PAGLLNGLENLDTLLLQENSLY 185

Query: 219 EIPPDIGCLSSLESLNLSGN 238
            IP        L    L GN
Sbjct: 186 TIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 8/41 (19%), Positives = 18/41 (43%)

Query: 220 IPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVN 260
               +  L +L++L L  N++ ++P        L + +L  
Sbjct: 164 PAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHG 204

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 1e-04
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 198 PPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLY 257
              L+ LS L  L+  D +I +I P +  L +L  ++L  N I  +   ++  S L  + 
Sbjct: 166 LTPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVT 223

Query: 258 LVN 260
           L N
Sbjct: 224 LTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.2 bits (82), Expect = 0.004
 Identities = 10/59 (16%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 203 GLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNC 261
            L++  K+  G   + +       L  + +L+  G  + ++   +  L+ L  L L + 
Sbjct: 17  ALANAIKIAAGKSNVTDTVT-QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDN 73

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 2e-04
 Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 1/70 (1%)

Query: 199 PLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYL 258
              +     ++L+L   +I  I      L   ++++ S N I  L      L RL+ L +
Sbjct: 12  AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLV 70

Query: 259 VNCVKLQSLP 268
            N    +   
Sbjct: 71  NNNRICRIGE 80

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 3e-04
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 224 IGCLSSLESLNLSGNNIESLPTSI-SQLSRLRWLYLVNCVKLQSL 267
               S    L++S   I SLP+     L +LR     N  KL +L
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTL 241

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 3e-04
 Identities = 10/65 (15%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 39 SGNVVELNLMCTPIEEVPLS--IECLPNLETLEMSFCN----SLKRLSTSICKLKSLRSL 92
          S ++  L++ C  + +   +  +  L   + + +  C       K +S+++    +L  L
Sbjct: 1  SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 93 DLSYC 97
          +L   
Sbjct: 61 NLRSN 65

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 0.001
 Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 12/94 (12%)

Query: 179 VDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEI-----MEIPPDIGCLSSLESL 233
           +D+  L+ +   E        LL  L   + + L DC +      +I   +    +L  L
Sbjct: 2   LDIQSLD-IQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 234 NLSGNNI-----ESLPTSI-SQLSRLRWLYLVNC 261
           NL  N +       +   + +   +++ L L NC
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.9 bits (91), Expect = 3e-04
 Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 5/83 (6%)

Query: 206 SLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNI-----ESLPTSISQLSRLRWLYLVN 260
           SLK   +   +   +   +    S++ + LSGN I       L  +I+    L      +
Sbjct: 9   SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 261 CVKLQSLPELPLLLVMLGASDCK 283
               +   E+P  L +L  +  K
Sbjct: 69  IFTGRVKDEIPEALRLLLQALLK 91

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.8 bits (89), Expect = 4e-04
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 214 DCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVN 260
           D +I +I P +  L+ L++L LS N+I  L  +++ L  L  L L +
Sbjct: 165 DNQISDIVP-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFS 209

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.001
 Identities = 18/106 (16%), Positives = 39/106 (36%), Gaps = 3/106 (2%)

Query: 150 SLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKK 209
           ++   L  L  +  L      +   P ++  L  LE L   +     +  + +    L++
Sbjct: 11  TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANL-PRLQE 69

Query: 210 LELGDCEIMEIPP--DIGCLSSLESLNLSGNNIESLPTSISQLSRL 253
           L L +  + +      +     L  LNL GN++        +L+ +
Sbjct: 70  LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	369
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.91
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.9
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.89
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.89
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.87
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.86
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.85
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.84
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.82
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.81
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.74
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.73
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.71
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.69
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.67
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.61
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.51
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.46
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.46
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.43
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.42
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.42
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.36
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.32
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.26
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.21
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.17
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.17
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.01
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.87
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.08
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.77
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.65
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.6
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.09
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.07

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=7.1e-23  Score=179.00  Aligned_cols=256  Identities=20%  Similarity=0.192  Sum_probs=151.4

Q ss_pred             ccEEecCCCCCccccCCccC-CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCc
Q 017542           21 SIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCI   98 (369)
Q Consensus        21 L~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~   98 (369)
                      .+.++.++.. ++.+|..++ ++++|++++|.++.++. .+.++++|++|++++|......+..|..+++|++|++++|.
T Consensus        12 ~~~~~C~~~~-L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~   90 (305)
T d1xkua_          12 LRVVQCSDLG-LEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ   90 (305)
T ss_dssp             TTEEECTTSC-CCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEEEecCCC-CCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCc
Confidence            4556666555 666665544 67777777777776664 46666777777777766555445556667777777777654


Q ss_pred             CCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCC--CCCcccCCCcchhhhccCcccCCCCCc
Q 017542           99 NLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLG--SLPESLGNLKSLERLHAGLLAIPQAPS  176 (369)
Q Consensus        99 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~  176 (369)
                      . ..+|..  ....++.|++.++......+..+.....+..+....+....  ..+..+..+++|+.+++.++.+..++.
T Consensus        91 l-~~l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~  167 (305)
T d1xkua_          91 L-KELPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ  167 (305)
T ss_dssp             C-SBCCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS
T ss_pred             c-CcCccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCc
Confidence            3 333432  23456666666554444333344455556666555433221  122334555666666666666665554


Q ss_pred             ccccCCCCcEEeecCCCCC-CCCccccCCCCCcEEeccCCCCccC-CCCCCCCCCCCEEEccCCcCCccchhhccCCcCc
Q 017542          177 SIVDLNKLETLSLFECRGL-VLPPLLSGLSSLKKLELGDCEIMEI-PPDIGCLSSLESLNLSGNNIESLPTSISQLSRLR  254 (369)
Q Consensus       177 ~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~  254 (369)
                      .+  +++|++|++++|... ..+..+.+++.++.|++++|.+.++ +.++..+++|++|++++|.++.+|.++..+++|+
T Consensus       168 ~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~  245 (305)
T d1xkua_         168 GL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQ  245 (305)
T ss_dssp             SC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCC
T ss_pred             cc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccccccccccccCCC
Confidence            43  456777777766633 3334566666777777777766663 3345566677777777777777766666677777


Q ss_pred             EecccCCcccccCCC----------CCcccceecccccc
Q 017542          255 WLYLVNCVKLQSLPE----------LPLLLVMLGASDCK  283 (369)
Q Consensus       255 ~L~l~~~~~l~~~~~----------~~~~L~~L~l~~c~  283 (369)
                      +|++++| +++.++.          ...+|+.|++.+++
T Consensus       246 ~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         246 VVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             EEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             EEECCCC-ccCccChhhccCcchhcccCCCCEEECCCCc
Confidence            7777776 4555542          12445666666554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.91  E-value=2.7e-24  Score=188.83  Aligned_cols=245  Identities=22%  Similarity=0.272  Sum_probs=200.1

Q ss_pred             CeeEEecCCccCc---ccCccCCCCCCCCEEeCcC-CcccccccccccCCCCCcEEecCCCcCCccCchhhhccCcccee
Q 017542           41 NVVELNLMCTPIE---EVPLSIECLPNLETLEMSF-CNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEI  116 (369)
Q Consensus        41 ~L~~L~l~~~~~~---~l~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  116 (369)
                      +++.|+++++.+.   .+|..+.++++|++|++++ |...+.+|..++++++|++|++++|......+..+..+.+|+++
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            6899999888776   5788899999999999987 45566889889999999999999988777778888999999999


Q ss_pred             eccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcch-hhhccCcccCCC-CCcccccCCCCcEEeecCCC-
Q 017542          117 NLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSL-ERLHAGLLAIPQ-APSSIVDLNKLETLSLFECR-  193 (369)
Q Consensus       117 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L-~~L~l~~~~~~~-~~~~l~~~~~L~~L~l~~~~-  193 (369)
                      ++++|.....+|..+..++.++.+++++|...+.+|..+..+..+ +.+.+++|.+.. .+..+..+. ...+++.++. 
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~-~~~l~l~~~~~  209 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML  209 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred             ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence            999888888888899999999999999987777788877777775 678888888774 345555544 4468888777 


Q ss_pred             CCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCC-ccchhhccCCcCcEecccCCcccc-cCCCC-
Q 017542          194 GLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIE-SLPTSISQLSRLRWLYLVNCVKLQ-SLPEL-  270 (369)
Q Consensus       194 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~-  270 (369)
                      ...++..+..+++++.++++++.+...+..+..+++|++|++++|+++ .+|..++.+++|++|++++| .++ .+|+. 
T Consensus       210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N-~l~g~iP~~~  288 (313)
T d1ogqa_         210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN-NLCGEIPQGG  288 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS-EEEEECCCST
T ss_pred             cccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCC-cccccCCCcc
Confidence            455677778889999999999988876566788899999999999999 89999999999999999998 455 67764 


Q ss_pred             -Ccccceecccccccccc
Q 017542          271 -PLLLVMLGASDCKRLQF  287 (369)
Q Consensus       271 -~~~L~~L~l~~c~~L~~  287 (369)
                       ..+|+.+++.+++.+.-
T Consensus       289 ~L~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         289 NLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             TGGGSCGGGTCSSSEEES
T ss_pred             cCCCCCHHHhCCCccccC
Confidence             35677777777765543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.90  E-value=3.4e-24  Score=188.17  Aligned_cols=247  Identities=18%  Similarity=0.182  Sum_probs=205.9

Q ss_pred             CCccEEecCCCCCcc--ccCCccC---CeeEEecCC-ccCc-ccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcE
Q 017542           19 ISSIKIDCYKCVNLR--EFPRISG---NVVELNLMC-TPIE-EVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRS   91 (369)
Q Consensus        19 ~~L~~L~l~~~~~l~--~~~~~~~---~L~~L~l~~-~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~   91 (369)
                      .+++.|+++++....  .+|+.++   +|++|++++ |.+. .+|..+.++++|++|++++|...+..+..+..+.+|++
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            469999999987333  4676665   999999974 7776 79999999999999999999887777777888999999


Q ss_pred             EecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCC-CeEeecCCCCCCCCCcccCCCcchhhhccCccc
Q 017542           92 LDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGL-KQLKLTGCTKLGSLPESLGNLKSLERLHAGLLA  170 (369)
Q Consensus        92 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L-~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  170 (369)
                      +++++|.....+|..+..+++++++++++|.....+|..+..+.++ +.+.++++...+..+..+..+..+ .+++..+.
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~  208 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSE
T ss_pred             cccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence            9999998888899999999999999999988877888888888776 778888876666666666555443 57777666


Q ss_pred             CC-CCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCcc-CCCCCCCCCCCCEEEccCCcCC-ccchhh
Q 017542          171 IP-QAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIME-IPPDIGCLSSLESLNLSGNNIE-SLPTSI  247 (369)
Q Consensus       171 ~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~-~~~~~~  247 (369)
                      .. .++..+..+++++.++++++.....+..+..+++|+.|++++|++.+ +|..+..+++|++|+|++|+++ .+|. +
T Consensus       209 ~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~  287 (313)
T d1ogqa_         209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-G  287 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-S
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-c
Confidence            55 45667778899999999999865555668888999999999999995 8888999999999999999999 6774 5


Q ss_pred             ccCCcCcEecccCCcccccC
Q 017542          248 SQLSRLRWLYLVNCVKLQSL  267 (369)
Q Consensus       248 ~~~~~L~~L~l~~~~~l~~~  267 (369)
                      +.+++|+.+++++|+.+...
T Consensus       288 ~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         288 GNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             TTGGGSCGGGTCSSSEEEST
T ss_pred             ccCCCCCHHHhCCCccccCC
Confidence            78899999999999766654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=2.4e-21  Score=169.12  Aligned_cols=250  Identities=18%  Similarity=0.209  Sum_probs=201.0

Q ss_pred             CCccCCCCCCCCCccEEecCCCCCccccCC-ccC---CeeEEecCCccCcccC-ccCCCCCCCCEEeCcCCccccccccc
Q 017542            8 SLRCFPQNIHFISSIKIDCYKCVNLREFPR-ISG---NVVELNLMCTPIEEVP-LSIECLPNLETLEMSFCNSLKRLSTS   82 (369)
Q Consensus         8 ~l~~~p~~~~~~~L~~L~l~~~~~l~~~~~-~~~---~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~   82 (369)
                      +++++|..+ .+++++|++++|. ++.+++ .+.   +|++|+++++.+..++ ..+..+++|++|++++|. .+.+|..
T Consensus        21 ~L~~lP~~l-~~~l~~L~Ls~N~-i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~-l~~l~~~   97 (305)
T d1xkua_          21 GLEKVPKDL-PPDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEK   97 (305)
T ss_dssp             CCCSCCCSC-CTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSS
T ss_pred             CCCccCCCC-CCCCCEEECcCCc-CCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCc-cCcCccc
Confidence            588999977 4789999999998 888875 343   9999999999999874 568899999999999975 4456653


Q ss_pred             ccCCCCCcEEecCCCcCCccCchhhhccCccceeecccccccc--ccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcc
Q 017542           83 ICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIK--ELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKS  160 (369)
Q Consensus        83 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~  160 (369)
                      +  ...++.|++.++......+..+.....++.++...+....  ..+..+..+++|+.+++++|. +..++..  ..++
T Consensus        98 ~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~-l~~l~~~--~~~~  172 (305)
T d1xkua_          98 M--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQG--LPPS  172 (305)
T ss_dssp             C--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSS--CCTT
T ss_pred             h--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCC-ccccCcc--cCCc
Confidence            3  4689999999977666555667778888888887664433  345567889999999999865 4445543  3678


Q ss_pred             hhhhccCcccCCC-CCcccccCCCCcEEeecCCCCCCCC-ccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCC
Q 017542          161 LERLHAGLLAIPQ-APSSIVDLNKLETLSLFECRGLVLP-PLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGN  238 (369)
Q Consensus       161 L~~L~l~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~  238 (369)
                      +++|+++++.... .+..+..++.++.|++++|....++ ..+.++++|++|++++|++.+++.++..+++|++|++++|
T Consensus       173 L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N  252 (305)
T d1xkua_         173 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN  252 (305)
T ss_dssp             CSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSS
T ss_pred             cCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccccccccccccCCCEEECCCC
Confidence            9999999998774 4567888999999999999976664 5778899999999999999999988999999999999999


Q ss_pred             cCCccchh-------hccCCcCcEecccCCccccc
Q 017542          239 NIESLPTS-------ISQLSRLRWLYLVNCVKLQS  266 (369)
Q Consensus       239 ~l~~~~~~-------~~~~~~L~~L~l~~~~~l~~  266 (369)
                      +++.++..       ....++|+.|++++|+ ++.
T Consensus       253 ~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~-~~~  286 (305)
T d1xkua_         253 NISAIGSNDFCPPGYNTKKASYSGVSLFSNP-VQY  286 (305)
T ss_dssp             CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS-SCG
T ss_pred             ccCccChhhccCcchhcccCCCCEEECCCCc-Ccc
Confidence            99987642       2456889999999995 443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.89  E-value=1.9e-21  Score=175.24  Aligned_cols=258  Identities=22%  Similarity=0.291  Sum_probs=160.0

Q ss_pred             CCCCccEEecCCCCCccccCC--ccCCeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEec
Q 017542           17 HFISSIKIDCYKCVNLREFPR--ISGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDL   94 (369)
Q Consensus        17 ~~~~L~~L~l~~~~~l~~~~~--~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l   94 (369)
                      .+.+|++|+++++. ++++..  .+.+|++|++++|.+++++. +..+++|++|++++|... .++. ++.+++|+.|++
T Consensus        42 ~l~~l~~L~l~~~~-I~~l~gl~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~-~i~~-l~~l~~L~~L~~  117 (384)
T d2omza2          42 DLDQVTTLQADRLG-IKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIA-DITP-LANLTNLTGLTL  117 (384)
T ss_dssp             HHTTCCEEECCSSC-CCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEEC
T ss_pred             HhCCCCEEECCCCC-CCCccccccCCCCCEEeCcCCcCCCCcc-ccCCcccccccccccccc-cccc-cccccccccccc
Confidence            45566666666665 555532  23366666666666666654 566666667766665443 2332 556666666666


Q ss_pred             CCCcCCcc---------------------------------------------------------------CchhhhccC
Q 017542           95 SYCINLES---------------------------------------------------------------FPEILEKME  111 (369)
Q Consensus        95 ~~~~~~~~---------------------------------------------------------------~~~~~~~l~  111 (369)
                      +++.....                                                               .......++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  197 (384)
T d2omza2         118 FNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT  197 (384)
T ss_dssp             CSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccccccccc
Confidence            55432110                                                               012345567


Q ss_pred             ccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecC
Q 017542          112 LLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFE  191 (369)
Q Consensus       112 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~  191 (369)
                      +++.+++++|......+  ...+++|++|++++|. +..++ .+..+++|+.+++++|.+..++ .+..+++|++|++++
T Consensus       198 ~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~~~-~~~~~~~L~~L~l~~  272 (384)
T d2omza2         198 NLESLIATNNQISDITP--LGILTNLDELSLNGNQ-LKDIG-TLASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGA  272 (384)
T ss_dssp             TCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCS
T ss_pred             ccceeeccCCccCCCCc--ccccCCCCEEECCCCC-CCCcc-hhhcccccchhccccCccCCCC-cccccccCCEeeccC
Confidence            77888887665433222  3556788888888754 34443 4667778888888888777664 366778888888888


Q ss_pred             CCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccchhhccCCcCcEecccCCcccccCCC--
Q 017542          192 CRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPE--  269 (369)
Q Consensus       192 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--  269 (369)
                      +....+++ +..++.++.+.+.+|.+.++. .+..++++++|++++|++++++ .+..+++|++|++++| .++.++.  
T Consensus       273 ~~l~~~~~-~~~~~~l~~l~~~~n~l~~~~-~~~~~~~l~~L~ls~n~l~~l~-~l~~l~~L~~L~L~~n-~l~~l~~l~  348 (384)
T d2omza2         273 NQISNISP-LAGLTALTNLELNENQLEDIS-PISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANN-KVSDVSSLA  348 (384)
T ss_dssp             SCCCCCGG-GTTCTTCSEEECCSSCCSCCG-GGGGCTTCSEEECCSSCCSCCG-GGGGCTTCCEEECCSS-CCCCCGGGG
T ss_pred             cccCCCCc-ccccccccccccccccccccc-ccchhcccCeEECCCCCCCCCc-ccccCCCCCEEECCCC-CCCCChhHc
Confidence            77665554 555667777777777766643 2556677777777777777665 3667777777777777 5555443  


Q ss_pred             CCcccceeccccccccccC
Q 017542          270 LPLLLVMLGASDCKRLQFL  288 (369)
Q Consensus       270 ~~~~L~~L~l~~c~~L~~l  288 (369)
                      ..++|++|+++++ +++.+
T Consensus       349 ~l~~L~~L~l~~N-~l~~l  366 (384)
T d2omza2         349 NLTNINWLSAGHN-QISDL  366 (384)
T ss_dssp             GCTTCCEEECCSS-CCCBC
T ss_pred             CCCCCCEEECCCC-cCCCC
Confidence            2356666776655 34443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.87  E-value=1.7e-21  Score=175.48  Aligned_cols=261  Identities=21%  Similarity=0.299  Sum_probs=181.2

Q ss_pred             CCccCCCCCCCCCccEEecCCCCCccccCCcc--CCeeEEecCCccCcccCccCCCCCCCCEEeCcCCccccc-------
Q 017542            8 SLRCFPQNIHFISSIKIDCYKCVNLREFPRIS--GNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKR-------   78 (369)
Q Consensus         8 ~l~~~p~~~~~~~L~~L~l~~~~~l~~~~~~~--~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~-------   78 (369)
                      ++++++....+++|++|++++|. +++++..-  .+|++|++++|.+..++. +..+++|+.|+++++...+.       
T Consensus        55 ~I~~l~gl~~L~nL~~L~Ls~N~-l~~l~~l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~L~~~~~~~~~~~~~~~~~  132 (384)
T d2omza2          55 GIKSIDGVEYLNNLTQINFSNNQ-LTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPLKNLT  132 (384)
T ss_dssp             CCCCCTTGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCT
T ss_pred             CCCCccccccCCCCCEEeCcCCc-CCCCccccCCcccccccccccccccccc-ccccccccccccccccccccccccccc
Confidence            35555443478888888888887 77777532  388888888888887664 67788888888876543210       


Q ss_pred             --------------------------------------------------------ccccccCCCCCcEEecCCCcCCcc
Q 017542           79 --------------------------------------------------------LSTSICKLKSLRSLDLSYCINLES  102 (369)
Q Consensus        79 --------------------------------------------------------~~~~~~~~~~L~~L~l~~~~~~~~  102 (369)
                                                                              .......+++++.+++++|.....
T Consensus       133 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~  212 (384)
T d2omza2         133 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDI  212 (384)
T ss_dssp             TCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC
T ss_pred             cccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCC
Confidence                                                                    001233456778888877654433


Q ss_pred             CchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCC
Q 017542          103 FPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLN  182 (369)
Q Consensus       103 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~  182 (369)
                      .+  ...+++|++|++++|.. ..++ .+..+++|+.+++++|.. ..++ .+..+++|++++++++.+..++ .+..++
T Consensus       213 ~~--~~~~~~L~~L~l~~n~l-~~~~-~l~~l~~L~~L~l~~n~l-~~~~-~~~~~~~L~~L~l~~~~l~~~~-~~~~~~  285 (384)
T d2omza2         213 TP--LGILTNLDELSLNGNQL-KDIG-TLASLTNLTDLDLANNQI-SNLA-PLSGLTKLTELKLGANQISNIS-PLAGLT  285 (384)
T ss_dssp             GG--GGGCTTCCEEECCSSCC-CCCG-GGGGCTTCSEEECCSSCC-CCCG-GGTTCTTCSEEECCSSCCCCCG-GGTTCT
T ss_pred             Cc--ccccCCCCEEECCCCCC-CCcc-hhhcccccchhccccCcc-CCCC-cccccccCCEeeccCcccCCCC-cccccc
Confidence            22  45677888888887653 3333 467788888888888653 3443 3677888888888888877664 366778


Q ss_pred             CCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccchhhccCCcCcEecccCCc
Q 017542          183 KLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCV  262 (369)
Q Consensus       183 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~  262 (369)
                      .++.+.+..|....++. +..+++++.|++++|.+.+++. +..+++|++|++++|.++.++ .++.+++|++|++++| 
T Consensus       286 ~l~~l~~~~n~l~~~~~-~~~~~~l~~L~ls~n~l~~l~~-l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N-  361 (384)
T d2omza2         286 ALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHN-  361 (384)
T ss_dssp             TCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSS-
T ss_pred             ccccccccccccccccc-cchhcccCeEECCCCCCCCCcc-cccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCC-
Confidence            88888888887665543 6667888888888888877643 677888888888888888776 4778888888888887 


Q ss_pred             ccccCCC--CCcccceecccc
Q 017542          263 KLQSLPE--LPLLLVMLGASD  281 (369)
Q Consensus       263 ~l~~~~~--~~~~L~~L~l~~  281 (369)
                      .++++++  ..++|+.|++++
T Consensus       362 ~l~~l~~l~~l~~L~~L~L~~  382 (384)
T d2omza2         362 QISDLTPLANLTRITQLGLND  382 (384)
T ss_dssp             CCCBCGGGTTCTTCSEEECCC
T ss_pred             cCCCChhhccCCCCCEeeCCC
Confidence            5666553  224556665543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.6e-21  Score=166.22  Aligned_cols=215  Identities=26%  Similarity=0.300  Sum_probs=130.2

Q ss_pred             EEecCCCCCccccCCccC-CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCC
Q 017542           23 KIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINL  100 (369)
Q Consensus        23 ~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  100 (369)
                      .++.+++. ++.+|..++ .+++|++++|.++.+|. .+..+++|++|+++++......+..+..+..++.+....+...
T Consensus        15 ~v~c~~~~-L~~iP~~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~   93 (284)
T d1ozna_          15 TTSCPQQG-LQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL   93 (284)
T ss_dssp             EEECCSSC-CSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred             EEEcCCCC-CCccCCCCCCCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence            45666555 788887666 88888888888888775 5778888888888887655555555666777777776654444


Q ss_pred             ccC-chhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCC-ccc
Q 017542          101 ESF-PEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAP-SSI  178 (369)
Q Consensus       101 ~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~l  178 (369)
                      ..+ +..+..+++|++|++++|......+..+...++|+.++++++                        .++.++ ..+
T Consensus        94 ~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N------------------------~l~~i~~~~f  149 (284)
T d1ozna_          94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN------------------------ALQALPDDTF  149 (284)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS------------------------CCCCCCTTTT
T ss_pred             ccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccc------------------------cccccChhHh
Confidence            333 455666777777777655543333344445555555555554                        333332 233


Q ss_pred             ccCCCCcEEeecCCCCCCCC-ccccCCCCCcEEeccCCCCcc-CCCCCCCCCCCCEEEccCCcCCccc-hhhccCCcCcE
Q 017542          179 VDLNKLETLSLFECRGLVLP-PLLSGLSSLKKLELGDCEIME-IPPDIGCLSSLESLNLSGNNIESLP-TSISQLSRLRW  255 (369)
Q Consensus       179 ~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~  255 (369)
                      ..+++|++|++++|....++ ..+.++++|+.+.+++|.+.. .+..+..+++|++|++++|.++.++ ..++.+++|++
T Consensus       150 ~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~  229 (284)
T d1ozna_         150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY  229 (284)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCE
T ss_pred             ccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCE
Confidence            44455555555555544433 344555666666666666655 3444555666666666666666444 34556666666


Q ss_pred             ecccCCc
Q 017542          256 LYLVNCV  262 (369)
Q Consensus       256 L~l~~~~  262 (369)
                      |++++|+
T Consensus       230 L~l~~N~  236 (284)
T d1ozna_         230 LRLNDNP  236 (284)
T ss_dssp             EECCSSC
T ss_pred             EEecCCC
Confidence            6666653

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=3.8e-20  Score=159.68  Aligned_cols=195  Identities=24%  Similarity=0.241  Sum_probs=131.5

Q ss_pred             CCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCC-CcccCCCcchhhhcc
Q 017542           88 SLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSL-PESLGNLKSLERLHA  166 (369)
Q Consensus        88 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l  166 (369)
                      ++++|+|++|......+..+..+++|++|+++++......+..+..++.++.+.+..+..+..+ +..+..+++|++|++
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            3444444444332222233444445555555444333333334444555555555443444333 344666677777777


Q ss_pred             CcccCCCCC-cccccCCCCcEEeecCCCCCCCC-ccccCCCCCcEEeccCCCCccCC-CCCCCCCCCCEEEccCCcCCcc
Q 017542          167 GLLAIPQAP-SSIVDLNKLETLSLFECRGLVLP-PLLSGLSSLKKLELGDCEIMEIP-PDIGCLSSLESLNLSGNNIESL  243 (369)
Q Consensus       167 ~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~  243 (369)
                      ++|.+..++ ..+....+|+.+++++|....++ ..+..+++|+.|++++|.+..++ ..+..+++|+++++++|+++.+
T Consensus       113 ~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i  192 (284)
T d1ozna_         113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV  192 (284)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccccc
Confidence            777766443 45666889999999999988776 46778899999999999998854 4577899999999999999955


Q ss_pred             -chhhccCCcCcEecccCCcccccCCC----CCcccceecccccc
Q 017542          244 -PTSISQLSRLRWLYLVNCVKLQSLPE----LPLLLVMLGASDCK  283 (369)
Q Consensus       244 -~~~~~~~~~L~~L~l~~~~~l~~~~~----~~~~L~~L~l~~c~  283 (369)
                       |..+..+++|++|++++| .+..++.    ..++|+++++.+.+
T Consensus       193 ~~~~f~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         193 HPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             CTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             ChhHhhhhhhccccccccc-ccccccccccccccccCEEEecCCC
Confidence             678899999999999998 5565543    34678888887754

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=7.3e-20  Score=156.27  Aligned_cols=196  Identities=23%  Similarity=0.223  Sum_probs=126.2

Q ss_pred             CCCccEEecCCCCCccccCCccC-CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecC
Q 017542           18 FISSIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLS   95 (369)
Q Consensus        18 ~~~L~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~   95 (369)
                      ...+...+.+++. ++.+|+.++ ++++|++++|.++.++. .+..+++|++|++++|.. +.++. ++.+++|++|+++
T Consensus         9 ~~~~~~v~C~~~~-L~~iP~~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l-~~l~~-~~~l~~L~~L~Ls   85 (266)
T d1p9ag_           9 VASHLEVNCDKRN-LTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQV-DGTLPVLGTLDLS   85 (266)
T ss_dssp             STTCCEEECTTSC-CSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC-CEEEC-CSCCTTCCEEECC
T ss_pred             cCCCeEEEccCCC-CCeeCcCcCcCCCEEECcCCcCCCcCHHHhhccccccccccccccc-ccccc-ccccccccccccc
Confidence            3445566777766 777776555 78888888888877664 467777888888887643 34443 4567777777777


Q ss_pred             CCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCC
Q 017542           96 YCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAP  175 (369)
Q Consensus        96 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  175 (369)
                      +|.. ...+..+..+++|++|+++++......+..+..                        +.+++++++.+|.+..++
T Consensus        86 ~N~l-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~------------------------l~~l~~L~l~~n~l~~l~  140 (266)
T d1p9ag_          86 HNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG------------------------LGELQELYLKGNELKTLP  140 (266)
T ss_dssp             SSCC-SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT------------------------CTTCCEEECTTSCCCCCC
T ss_pred             cccc-cccccccccccccccccccccccceeecccccc------------------------ccccccccccccccceec
Confidence            7643 334445556666666666655443333333344                        444445555555544443


Q ss_pred             c-ccccCCCCcEEeecCCCCCCCC-ccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCC
Q 017542          176 S-SIVDLNKLETLSLFECRGLVLP-PLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIE  241 (369)
Q Consensus       176 ~-~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  241 (369)
                      . .+..+++++.+++++|....++ ..+..+++|++|++++|++..+|..+..+++|+.|+|++|.+.
T Consensus       141 ~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             TTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cccccccccchhcccccccccccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCC
Confidence            2 3345667777777777765555 3466777888888888888887777777888888888887654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=5.3e-19  Score=150.86  Aligned_cols=191  Identities=22%  Similarity=0.264  Sum_probs=128.6

Q ss_pred             eEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccc
Q 017542           43 VELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEAS  122 (369)
Q Consensus        43 ~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  122 (369)
                      .+++.++++++.+|..+.  +++++|+|++|......+..|.++++|++|++++|.. +.++. ++.++           
T Consensus        13 ~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l-~~l~~-~~~l~-----------   77 (266)
T d1p9ag_          13 LEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQV-DGTLP-----------   77 (266)
T ss_dssp             CEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC-CEEEC-CSCCT-----------
T ss_pred             eEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccc-ccccc-ccccc-----------
Confidence            344555556666665432  3566666666543332234455566666666666532 22221 23444           


Q ss_pred             cccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCC-cccccCCCCcEEeecCCCCCCCCc-c
Q 017542          123 NIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAP-SSIVDLNKLETLSLFECRGLVLPP-L  200 (369)
Q Consensus       123 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~-~  200 (369)
                                   +|++|++++|. +...+..+..+++|+.|+++++.+..++ ..+..+.+++.|.+++|....++. .
T Consensus        78 -------------~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~  143 (266)
T d1p9ag_          78 -------------VLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL  143 (266)
T ss_dssp             -------------TCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred             -------------ccccccccccc-ccccccccccccccccccccccccceeeccccccccccccccccccccceecccc
Confidence                         45555555432 2333344555566666666666655443 445678899999999999777764 5


Q ss_pred             ccCCCCCcEEeccCCCCccCCC-CCCCCCCCCEEEccCCcCCccchhhccCCcCcEecccCCc
Q 017542          201 LSGLSSLKKLELGDCEIMEIPP-DIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCV  262 (369)
Q Consensus       201 ~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~  262 (369)
                      +..+++++.+++++|++..++. .+..+++|++|+|++|+++.+|..+..+++|+.|++++|+
T Consensus       144 ~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         144 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             TTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             ccccccchhcccccccccccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCC
Confidence            6678999999999999999654 4678999999999999999999999999999999999985

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.81  E-value=2.1e-18  Score=152.95  Aligned_cols=67  Identities=34%  Similarity=0.451  Sum_probs=51.2

Q ss_pred             CCCCCEEEccCCcCCccchhhccCCcCcEecccCCcccccCCCCCcccceeccccccccccCCCchhhhHHH
Q 017542          227 LSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPELPLLLVMLGASDCKRLQFLPELTSCLEEL  298 (369)
Q Consensus       227 ~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~l~~l  298 (369)
                      +++|++|++++|.++.+|.   .+++|++|++++| .++++|+.+.+|++|++++|+ |+.++..+.+++.|
T Consensus       283 ~~~L~~L~Ls~N~l~~lp~---~~~~L~~L~L~~N-~L~~l~~~~~~L~~L~L~~N~-L~~lp~~~~~L~~L  349 (353)
T d1jl5a_         283 PPSLEELNVSNNKLIELPA---LPPRLERLIASFN-HLAEVPELPQNLKQLHVEYNP-LREFPDIPESVEDL  349 (353)
T ss_dssp             CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSC-CSSCCCCCTTCCEE
T ss_pred             CCCCCEEECCCCccCcccc---ccCCCCEEECCCC-cCCccccccCCCCEEECcCCc-CCCCCccccccCee
Confidence            5678888888888887774   3578888888877 678888777788888888886 88777666555544

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=1.6e-17  Score=138.15  Aligned_cols=123  Identities=29%  Similarity=0.400  Sum_probs=73.1

Q ss_pred             hhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEE
Q 017542          131 IENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKL  210 (369)
Q Consensus       131 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L  210 (369)
                      +..+++|+.+.++++.....  ..+...+.+..+.++.+.+... ..+..+++|+.|++++|.....+. +.++++|+.|
T Consensus       103 l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~-l~~l~~L~~L  178 (227)
T d1h6ua2         103 IAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTL  178 (227)
T ss_dssp             GTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred             cccccccccccccccccccc--chhccccchhhhhchhhhhchh-hhhccccccccccccccccccchh-hcccccceec
Confidence            33444555555544332211  1133344445555555444432 234556677777777776544443 5667777777


Q ss_pred             eccCCCCccCCCCCCCCCCCCEEEccCCcCCccchhhccCCcCcEeccc
Q 017542          211 ELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLV  259 (369)
Q Consensus       211 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~  259 (369)
                      ++++|++.+++. +..+++|++|++++|++++++ .++.+++|++|+++
T Consensus       179 ~Ls~n~l~~l~~-l~~l~~L~~L~Ls~N~lt~i~-~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         179 KADDNKISDISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLT  225 (227)
T ss_dssp             ECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEE
T ss_pred             ccCCCccCCChh-hcCCCCCCEEECcCCcCCCCc-ccccCCCCCEEEee
Confidence            777777766543 566777888888877777776 36777777777775

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.73  E-value=6.8e-16  Score=136.52  Aligned_cols=256  Identities=20%  Similarity=0.176  Sum_probs=159.2

Q ss_pred             CCCCCcCCccCCCCCCCCCccEEecCCCCCccccCCccCCeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccc
Q 017542            2 IMAGCESLRCFPQNIHFISSIKIDCYKCVNLREFPRISGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLST   81 (369)
Q Consensus         2 ~l~~c~~l~~~p~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~   81 (369)
                      ++.++ +++++|..  .++|++|++++|. ++++|+.+++|++|+++++.++.++..   .+.|++|++++|. ...+|.
T Consensus        44 dLs~~-~L~~lp~~--~~~L~~L~Ls~N~-l~~lp~~~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~n~-l~~lp~  115 (353)
T d1jl5a_          44 ELNNL-GLSSLPEL--PPHLESLVASCNS-LTELPELPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQ-LEKLPE  115 (353)
T ss_dssp             ECTTS-CCSCCCSC--CTTCSEEECCSSC-CSSCCCCCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSC-CSSCCC
T ss_pred             EeCCC-CCCCCCCC--CCCCCEEECCCCC-Ccccccchhhhhhhhhhhcccchhhhh---ccccccccccccc-cccccc
Confidence            45554 57888864  5789999999987 899999888999999999999877642   2479999999975 456665


Q ss_pred             cccCCCCCcEEecCCCcCCccCc------------------hhhhccCccceeecccccccccc----------------
Q 017542           82 SICKLKSLRSLDLSYCINLESFP------------------EILEKMELLEEINLEEASNIKEL----------------  127 (369)
Q Consensus        82 ~~~~~~~L~~L~l~~~~~~~~~~------------------~~~~~l~~L~~L~l~~~~~~~~~----------------  127 (369)
                       ++.+++|++|+++++.......                  ..+..++.++.+++.++......                
T Consensus       116 -~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~  194 (353)
T d1jl5a_         116 -LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNIL  194 (353)
T ss_dssp             -CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCC
T ss_pred             -hhhhccceeeccccccccccccccccccchhhccccccccccccccccceecccccccccccccccccccccccccccc
Confidence             6779999999999875432211                  12233444445544433221100                


Q ss_pred             --chhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCC----------
Q 017542          128 --PSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGL----------  195 (369)
Q Consensus       128 --~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~----------  195 (369)
                        ......++.++.++++++.. ...+..   ..++..+.+..+.+...+..   ...+...++..+...          
T Consensus       195 ~~~~~~~~l~~L~~l~l~~n~~-~~~~~~---~~~l~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~l~~l~~~~~  267 (353)
T d1jl5a_         195 EELPELQNLPFLTTIYADNNLL-KTLPDL---PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSELPPNLY  267 (353)
T ss_dssp             SSCCCCTTCTTCCEEECCSSCC-SSCCSC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEESCCCTTCC
T ss_pred             cccccccccccccccccccccc-cccccc---cccccccccccccccccccc---cccccccccccccccccccccchhc
Confidence              00112233444444443221 111111   11222222222222211111   122222332222110          


Q ss_pred             -------CCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccchhhccCCcCcEecccCCcccccCC
Q 017542          196 -------VLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLP  268 (369)
Q Consensus       196 -------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~  268 (369)
                             .+......+++|++|++++|.+..+|..   +++|++|++++|+++.+|.   .+++|++|++++|+ ++.+|
T Consensus       268 ~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~L~~l~~---~~~~L~~L~L~~N~-L~~lp  340 (353)
T d1jl5a_         268 YLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNP-LREFP  340 (353)
T ss_dssp             EEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSSCC
T ss_pred             ccccccCccccccccCCCCCEEECCCCccCccccc---cCCCCEEECCCCcCCcccc---ccCCCCEEECcCCc-CCCCC
Confidence                   1112223457899999999999988753   5799999999999999885   35689999999995 99999


Q ss_pred             CCCcccceeccc
Q 017542          269 ELPLLLVMLGAS  280 (369)
Q Consensus       269 ~~~~~L~~L~l~  280 (369)
                      ..+.+|+.|.+.
T Consensus       341 ~~~~~L~~L~~~  352 (353)
T d1jl5a_         341 DIPESVEDLRMN  352 (353)
T ss_dssp             CCCTTCCEEECC
T ss_pred             ccccccCeeECc
Confidence            988899998874

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=1.4e-16  Score=132.38  Aligned_cols=207  Identities=20%  Similarity=0.262  Sum_probs=157.4

Q ss_pred             CCCccEEecCCCCCccccCC--ccCCeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecC
Q 017542           18 FISSIKIDCYKCVNLREFPR--ISGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLS   95 (369)
Q Consensus        18 ~~~L~~L~l~~~~~l~~~~~--~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~   95 (369)
                      +.++..++++.+. +.++..  .+.+|++|++.+++++.++ .+..+++|++|++++|...+ +.. +..+++|++++++
T Consensus        18 l~~~~~~~l~~~~-~~d~~~~~~l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~-~~~-l~~l~~l~~l~~~   93 (227)
T d1h6ua2          18 LANAIKIAAGKSN-VTDTVTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELS   93 (227)
T ss_dssp             HHHHHHHHTTCSS-TTSEECHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECC
T ss_pred             HHHHHHHHhCCCC-cCCcCCHHHcCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeec-ccc-ccccccccccccc
Confidence            3344455665555 444332  2339999999999999885 47889999999999976543 333 7889999999999


Q ss_pred             CCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCC
Q 017542           96 YCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAP  175 (369)
Q Consensus        96 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  175 (369)
                      +|... .++ .+..+++|++++++++.....  ..+...+.++.+.++++.....  ..+..+++|++|++++|.+...+
T Consensus        94 ~n~~~-~i~-~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~  167 (227)
T d1h6ua2          94 GNPLK-NVS-AIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLT  167 (227)
T ss_dssp             SCCCS-CCG-GGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCG
T ss_pred             ccccc-ccc-ccccccccccccccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccccch
Confidence            87543 343 477899999999987654432  2355678899999887654332  23677888999999999887654


Q ss_pred             cccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccC
Q 017542          176 SSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSG  237 (369)
Q Consensus       176 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~  237 (369)
                       .+.++++|++|++++|....++. +..+++|++|++++|++++++. +..+++|++|++++
T Consensus       168 -~l~~l~~L~~L~Ls~n~l~~l~~-l~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         168 -PLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             -GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEE
T ss_pred             -hhcccccceecccCCCccCCChh-hcCCCCCCEEECcCCcCCCCcc-cccCCCCCEEEeeC
Confidence             47889999999999999777765 7888999999999999988764 78899999999874

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=7.2e-18  Score=144.97  Aligned_cols=217  Identities=15%  Similarity=0.132  Sum_probs=115.6

Q ss_pred             cEEecCCCCCccccCCc-cC-CeeEEecCCccCcccCccCCCCCCCCEEeCcCCccccc-ccccccCCCCCcEEecCCCc
Q 017542           22 IKIDCYKCVNLREFPRI-SG-NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKR-LSTSICKLKSLRSLDLSYCI   98 (369)
Q Consensus        22 ~~L~l~~~~~l~~~~~~-~~-~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~   98 (369)
                      +.+|++++....++... .. .+..+.+....+...........+|++|++++|..... +...+.++++|++|++++|.
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~   82 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR   82 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB
T ss_pred             CEEECCCCCCCchHHHHHHhccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccC
Confidence            35677765522221111 11 34444444333332222233445778888887654433 33445677888888888776


Q ss_pred             CCccCchhhhccCccceeeccccccccc--cchhhhcCCCCCeEeecCCCCCCCC--Cccc-CCCcchhhhccCccc--C
Q 017542           99 NLESFPEILEKMELLEEINLEEASNIKE--LPSSIENLEGLKQLKLTGCTKLGSL--PESL-GNLKSLERLHAGLLA--I  171 (369)
Q Consensus        99 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~-~~l~~L~~L~l~~~~--~  171 (369)
                      .....+..+..+++|++|++++|..+++  +......+++|++|++++|..+++.  ...+ ...++|+.|+++++.  +
T Consensus        83 l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i  162 (284)
T d2astb2          83 LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNL  162 (284)
T ss_dssp             CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGS
T ss_pred             CCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccc
Confidence            5555556667777888888877766552  2333456778888888777654321  1111 123455555555432  2


Q ss_pred             C--CCCcccccCCCCcEEeecCCC-CC-CCCccccCCCCCcEEeccCCC-Ccc-CCCCCCCCCCCCEEEccCC
Q 017542          172 P--QAPSSIVDLNKLETLSLFECR-GL-VLPPLLSGLSSLKKLELGDCE-IME-IPPDIGCLSSLESLNLSGN  238 (369)
Q Consensus       172 ~--~~~~~l~~~~~L~~L~l~~~~-~~-~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~~L~~L~l~~~  238 (369)
                      +  .+...+..+++|++|++++|. .+ .....+.++++|++|++++|. +.+ ....+..+++|++|+++++
T Consensus       163 ~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         163 QKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            1  111223446667777766654 21 233345556666666666653 322 2223455666666666665

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2.3e-16  Score=132.26  Aligned_cols=213  Identities=19%  Similarity=0.217  Sum_probs=118.0

Q ss_pred             cEEecCCCCCccccCCccC-CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCccccccc-ccccCCCCCcEEecCCCc
Q 017542           22 IKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLS-TSICKLKSLRSLDLSYCI   98 (369)
Q Consensus        22 ~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~   98 (369)
                      +.++.++.. +.++|..++ ++++|++++|.++.++. .|.++++|++|++++|.....++ ..+.++++++++.+.++.
T Consensus        11 ~~i~c~~~~-l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n   89 (242)
T d1xwdc1          11 RVFLCQESK-VTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   89 (242)
T ss_dssp             SEEEEESCS-CSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCT
T ss_pred             CEEEEeCCC-CCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccc
Confidence            466777665 777776554 78888888888877765 46778888888888776655443 346667777777766543


Q ss_pred             -CCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCC-c
Q 017542           99 -NLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAP-S  176 (369)
Q Consensus        99 -~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~  176 (369)
                       .....+..+..+++|+++++.++.... .+. ...+.+++.+.                     .+...++.+..++ .
T Consensus        90 ~l~~~~~~~~~~l~~L~~l~l~~~~l~~-~~~-~~~~~~l~~l~---------------------~~~~~n~~l~~i~~~  146 (242)
T d1xwdc1          90 NLLYINPEAFQNLPNLQYLLISNTGIKH-LPD-VHKIHSLQKVL---------------------LDIQDNINIHTIERN  146 (242)
T ss_dssp             TCCEECTTSEECCTTCCEEEEESCCCCS-CCC-CTTTCBSSCEE---------------------EEEESCTTCCEECTT
T ss_pred             cccccccccccccccccccccchhhhcc-ccc-ccccccccccc---------------------ccccccccccccccc
Confidence             333344556667777777776554322 111 11222222222                     1111222222111 1


Q ss_pred             cccc-CCCCcEEeecCCCCCCCCccccCCCCCcEE-eccCCCCccCCCC-CCCCCCCCEEEccCCcCCccch-hhccCCc
Q 017542          177 SIVD-LNKLETLSLFECRGLVLPPLLSGLSSLKKL-ELGDCEIMEIPPD-IGCLSSLESLNLSGNNIESLPT-SISQLSR  252 (369)
Q Consensus       177 ~l~~-~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L-~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~  252 (369)
                      .+.. ...++.+++.++....++.......+++++ .+.+|.+.+++.. +..+++|++|++++|+++.+|. .+..+++
T Consensus       147 ~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~  226 (242)
T d1xwdc1         147 SFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKK  226 (242)
T ss_dssp             SSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCE
T ss_pred             ccccccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcc
Confidence            1222 235566666666655555433344444444 3455666666543 4667777777777777776653 2344444


Q ss_pred             CcEecc
Q 017542          253 LRWLYL  258 (369)
Q Consensus       253 L~~L~l  258 (369)
                      |+.+++
T Consensus       227 L~~l~~  232 (242)
T d1xwdc1         227 LRARST  232 (242)
T ss_dssp             EESSSE
T ss_pred             cccCcC
Confidence            444444

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=8.2e-16  Score=124.77  Aligned_cols=161  Identities=22%  Similarity=0.346  Sum_probs=80.8

Q ss_pred             CCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhc
Q 017542           86 LKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLH  165 (369)
Q Consensus        86 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  165 (369)
                      +.++++|++++|... .+ +.++.+++|++|++++|. ++.+++ +.++++|++|++++|.. ..++ .+..+++|+.++
T Consensus        39 l~~l~~L~l~~~~i~-~l-~~l~~l~nL~~L~Ls~N~-l~~~~~-l~~l~~L~~L~l~~n~~-~~~~-~l~~l~~L~~L~  112 (199)
T d2omxa2          39 LDQVTTLQADRLGIK-SI-DGVEYLNNLTQINFSNNQ-LTDITP-LKNLTKLVDILMNNNQI-ADIT-PLANLTNLTGLT  112 (199)
T ss_dssp             HTTCCEEECTTSCCC-CC-TTGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCC-CCCG-GGTTCTTCSEEE
T ss_pred             hcCCCEEECCCCCCC-Cc-cccccCCCcCcCcccccc-ccCccc-ccCCccccccccccccc-cccc-cccccccccccc
Confidence            344444444443322 11 123444455555554432 222221 44445555555544322 2222 244444555555


Q ss_pred             cCcccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccch
Q 017542          166 AGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPT  245 (369)
Q Consensus       166 l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~  245 (369)
                      ++++..... ..+..+++|+.|++++|....++ .+..+++++.|++.+|.+.+++ .+..+++|++|++++|++++++ 
T Consensus       113 l~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~l~~l~-~l~~l~~L~~L~ls~N~i~~i~-  188 (199)
T d2omxa2         113 LFNNQITDI-DPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQVTDLK-PLANLTTLERLDISSNKVSDIS-  188 (199)
T ss_dssp             CCSSCCCCC-GGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCG-
T ss_pred             ccccccccc-cccchhhhhHHhhhhhhhhcccc-cccccccccccccccccccCCc-cccCCCCCCEEECCCCCCCCCc-
Confidence            544444332 23445566666666666554443 3555666666666666666543 2556667777777777666664 


Q ss_pred             hhccCCcCcEe
Q 017542          246 SISQLSRLRWL  256 (369)
Q Consensus       246 ~~~~~~~L~~L  256 (369)
                      .++++++|++|
T Consensus       189 ~l~~L~~L~~L  199 (199)
T d2omxa2         189 VLAKLTNLESL  199 (199)
T ss_dssp             GGGGCTTCSEE
T ss_pred             cccCCCCCCcC
Confidence            35566666654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=3.3e-16  Score=131.34  Aligned_cols=189  Identities=15%  Similarity=0.122  Sum_probs=112.4

Q ss_pred             CCccCCCCCCCCCccEEecCCCCCccccCC-ccC---CeeEEecCCccCcc-cCc-cCCCCCCCCEEeCcCCcccc-ccc
Q 017542            8 SLRCFPQNIHFISSIKIDCYKCVNLREFPR-ISG---NVVELNLMCTPIEE-VPL-SIECLPNLETLEMSFCNSLK-RLS   80 (369)
Q Consensus         8 ~l~~~p~~~~~~~L~~L~l~~~~~l~~~~~-~~~---~L~~L~l~~~~~~~-l~~-~~~~~~~L~~L~l~~~~~~~-~~~   80 (369)
                      +++++|..+ .+++++|++++|. +..++. .+.   +|++|++++|.+.. ++. .+..+++++++.+..+.... ..+
T Consensus        19 ~l~~iP~~l-~~~l~~L~Ls~n~-i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~   96 (242)
T d1xwdc1          19 KVTEIPSDL-PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP   96 (242)
T ss_dssp             SCSSCCSCS-CSCCSEEEEESCC-CCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECT
T ss_pred             CCCCcCCCC-CCCCCEEECcCCc-CCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccc
Confidence            678888866 3689999999998 888875 233   99999999988764 443 57789999999987765554 444


Q ss_pred             ccccCCCCCcEEecCCCcCCccCc-hhhhccCccceeeccccccccccchhhhcCC-CCCeEeecCCCCCCCCCcccCCC
Q 017542           81 TSICKLKSLRSLDLSYCINLESFP-EILEKMELLEEINLEEASNIKELPSSIENLE-GLKQLKLTGCTKLGSLPESLGNL  158 (369)
Q Consensus        81 ~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l  158 (369)
                      ..+.++++|++++++++......+ ..+..+..+..+...++......+..+..++ .++.+++.+              
T Consensus        97 ~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~--------------  162 (242)
T d1xwdc1          97 EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK--------------  162 (242)
T ss_dssp             TSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS--------------
T ss_pred             ccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccc--------------
Confidence            667889999999999975543222 2233444444444442222222222333332 455555544              


Q ss_pred             cchhhhccCcccCCCCCcccccCCCCcEEe-ecCCCCCCCCc-cccCCCCCcEEeccCCCCccCCC
Q 017542          159 KSLERLHAGLLAIPQAPSSIVDLNKLETLS-LFECRGLVLPP-LLSGLSSLKKLELGDCEIMEIPP  222 (369)
Q Consensus       159 ~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~-l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~  222 (369)
                                +.+..++.......+++++. +.++....++. .+.++++|++|++++|++.+++.
T Consensus       163 ----------n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~  218 (242)
T d1xwdc1         163 ----------NGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS  218 (242)
T ss_dssp             ----------SCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCS
T ss_pred             ----------ccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCH
Confidence                      33333333222333333332 33334444443 34556666666666666665543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=5.2e-16  Score=127.06  Aligned_cols=165  Identities=27%  Similarity=0.322  Sum_probs=96.2

Q ss_pred             CCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhc
Q 017542           86 LKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLH  165 (369)
Q Consensus        86 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  165 (369)
                      +.+|++|++++|.... ++ .+..+++|++|++++|.. +.++ .+..+++|+.|++++|. ++.++ .+..+++|+.++
T Consensus        45 L~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i-~~l~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKL-TDIK-PLANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCC-CCCG-GGTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEE
T ss_pred             hcCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccc-cCcc-ccccCcccccccccccc-ccccc-cccccccccccc
Confidence            3344555554443221 21 234455555555554432 2222 13445555555555532 33333 245555555555


Q ss_pred             cCcccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccch
Q 017542          166 AGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPT  245 (369)
Q Consensus       166 l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~  245 (369)
                      ++++.+..+ ..+..+++++.+++++|.....+ .+..+++|+.+++++|.+.+++. +..+++|++|++++|.+++++ 
T Consensus       119 l~~~~~~~~-~~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N~i~~l~-  194 (210)
T d1h6ta2         119 LEHNGISDI-NGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-  194 (210)
T ss_dssp             CTTSCCCCC-GGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-
T ss_pred             ccccccccc-ccccccccccccccccccccccc-ccccccccccccccccccccccc-ccCCCCCCEEECCCCCCCCCh-
Confidence            555555443 34566677777777777655433 35567778888888887776543 667788888888888888776 


Q ss_pred             hhccCCcCcEecccC
Q 017542          246 SISQLSRLRWLYLVN  260 (369)
Q Consensus       246 ~~~~~~~L~~L~l~~  260 (369)
                      .+.++++|++|++++
T Consensus       195 ~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         195 ALAGLKNLDVLELFS  209 (210)
T ss_dssp             GGTTCTTCSEEEEEE
T ss_pred             hhcCCCCCCEEEccC
Confidence            477788888888763

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=1.4e-15  Score=123.40  Aligned_cols=161  Identities=22%  Similarity=0.335  Sum_probs=85.4

Q ss_pred             CCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEe
Q 017542           62 LPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLK  141 (369)
Q Consensus        62 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  141 (369)
                      ++++++|++++|... .+. .+..+++|++|++++|... .++. ++.+++|++|++++|... .++ .+.++++|+.++
T Consensus        39 l~~l~~L~l~~~~i~-~l~-~l~~l~nL~~L~Ls~N~l~-~~~~-l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~  112 (199)
T d2omxa2          39 LDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLT-DITP-LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLT  112 (199)
T ss_dssp             HTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEE
T ss_pred             hcCCCEEECCCCCCC-Ccc-ccccCCCcCcCcccccccc-Cccc-ccCCcccccccccccccc-ccc-cccccccccccc
Confidence            344555555554322 222 2444555555555554322 2221 445555555555544322 222 244555555555


Q ss_pred             ecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCC
Q 017542          142 LTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIP  221 (369)
Q Consensus       142 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  221 (369)
                      +++|.... . ..+..+++|+.+++++|.+..++ .+..+++|+.|++.+|....++. ++++++|++|++++|++.+++
T Consensus       113 l~~~~~~~-~-~~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~l~~l~~-l~~l~~L~~L~ls~N~i~~i~  188 (199)
T d2omxa2         113 LFNNQITD-I-DPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQVTDLKP-LANLTTLERLDISSNKVSDIS  188 (199)
T ss_dssp             CCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred             cccccccc-c-cccchhhhhHHhhhhhhhhcccc-cccccccccccccccccccCCcc-ccCCCCCCEEECCCCCCCCCc
Confidence            55543322 1 22455566666666666655443 45666777777777776655543 566777777777777776654


Q ss_pred             CCCCCCCCCCEE
Q 017542          222 PDIGCLSSLESL  233 (369)
Q Consensus       222 ~~~~~~~~L~~L  233 (369)
                       .+..+++|++|
T Consensus       189 -~l~~L~~L~~L  199 (199)
T d2omxa2         189 -VLAKLTNLESL  199 (199)
T ss_dssp             -GGGGCTTCSEE
T ss_pred             -cccCCCCCCcC
Confidence             35566666654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.9e-17  Score=141.15  Aligned_cols=216  Identities=18%  Similarity=0.213  Sum_probs=133.1

Q ss_pred             eEEecCCccCc-cc-CccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCcc-CchhhhccCccceeecc
Q 017542           43 VELNLMCTPIE-EV-PLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLES-FPEILEKMELLEEINLE  119 (369)
Q Consensus        43 ~~L~l~~~~~~-~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~  119 (369)
                      ++++++++.+. .. ...+.  .....+.++.......... .....+|++|++++|..... +...+..+++|++|+++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~~~-~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeeccccccccchhh-hccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            46788776653 11 11111  2345556655332222222 33467899999999865543 45667889999999999


Q ss_pred             ccccccccchhhhcCCCCCeEeecCCCCCCCC--CcccCCCcchhhhccCccc-CC--CCCcccc-cCCCCcEEeecCCC
Q 017542          120 EASNIKELPSSIENLEGLKQLKLTGCTKLGSL--PESLGNLKSLERLHAGLLA-IP--QAPSSIV-DLNKLETLSLFECR  193 (369)
Q Consensus       120 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~-~~--~~~~~l~-~~~~L~~L~l~~~~  193 (369)
                      +|.........+..+++|++|++++|..+++.  ......+++|++|++++|. ++  .+...+. .+++|+.|+++++.
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~  159 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  159 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccc
Confidence            88765566677888999999999998766532  1223456778888887764 22  1111222 24677888877653


Q ss_pred             C----CCCCccccCCCCCcEEeccCCCC-cc-CCCCCCCCCCCCEEEccCC-cCC-ccchhhccCCcCcEecccCC
Q 017542          194 G----LVLPPLLSGLSSLKKLELGDCEI-ME-IPPDIGCLSSLESLNLSGN-NIE-SLPTSISQLSRLRWLYLVNC  261 (369)
Q Consensus       194 ~----~~~~~~~~~~~~L~~L~l~~~~~-~~-~~~~~~~~~~L~~L~l~~~-~l~-~~~~~~~~~~~L~~L~l~~~  261 (369)
                      .    ..+...+.++++|++|++++|.. .+ ....+..+++|++|++++| .++ .....++.+|+|++|++++|
T Consensus       160 ~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         160 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            1    12223345567778888877653 32 3344566777778887775 455 22344566777777777776

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=8.7e-15  Score=119.62  Aligned_cols=123  Identities=30%  Similarity=0.404  Sum_probs=66.8

Q ss_pred             hccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEE
Q 017542          108 EKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETL  187 (369)
Q Consensus       108 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L  187 (369)
                      +.+++|++|++++|+ ++.++ .+..+++|+.+++++|.. ..+ ..+..+++++.++++++.+... ..+..+++|+.+
T Consensus        87 ~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~~~~-~~~-~~l~~l~~l~~l~~~~n~l~~~-~~~~~l~~L~~l  161 (210)
T d1h6ta2          87 ANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLSLEHNGI-SDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTL  161 (210)
T ss_dssp             TTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEECTTSCC-CCC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEE
T ss_pred             ccCcccccccccccc-ccccc-cccccccccccccccccc-ccc-cccccccccccccccccccccc-cccccccccccc
Confidence            344444444444332 22222 234444555555544332 122 1244455555555555554433 234556677777


Q ss_pred             eecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccC
Q 017542          188 SLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSG  237 (369)
Q Consensus       188 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~  237 (369)
                      ++++|....++. +.++++|++|++++|.+.+++ .+..+++|++|+|++
T Consensus       162 ~l~~n~l~~i~~-l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         162 SLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             ECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEEE
T ss_pred             cccccccccccc-ccCCCCCCEEECCCCCCCCCh-hhcCCCCCCEEEccC
Confidence            777777655543 566777777777777776664 366777777777753

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.51  E-value=4.8e-14  Score=113.41  Aligned_cols=150  Identities=19%  Similarity=0.118  Sum_probs=113.9

Q ss_pred             ccEEecCCCCCccccCCccC-CeeEEecCCccCcc-cC-ccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCC
Q 017542           21 SIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEE-VP-LSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYC   97 (369)
Q Consensus        21 L~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~-l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~   97 (369)
                      .+.++.+++. +..+|..++ ++++|++++|.++. ++ ..+..+++|+.|++++|......+..+..+++|++|++++|
T Consensus        10 ~~~v~Cs~~~-L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          10 GTTVDCTGRG-LKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TTEEECTTSC-CSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CCEEEEeCCC-cCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            3578888887 889987666 99999999999974 43 35688999999999998877777778888999999999998


Q ss_pred             cCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCC
Q 017542           98 INLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIP  172 (369)
Q Consensus        98 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  172 (369)
                      ......+..|.++++|++|++++|......+.+|..+++|++++++++........ ..-...++...+..+.+.
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~-~~~~~~l~~~~l~~~~~~  162 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL-AWFAEWLRKKSLNGGAAR  162 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG-HHHHHHHHHHCCSGGGCB
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccch-HHHhhhhhhhcccCCCeE
Confidence            77666677889999999999998876666667788899999999998764433211 111123555555555443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.46  E-value=4.4e-14  Score=113.66  Aligned_cols=128  Identities=19%  Similarity=0.145  Sum_probs=82.3

Q ss_pred             eEEecCCccCcccCccCCCCCCCCEEeCcCCcccccc-cccccCCCCCcEEecCCCcCCccCchhhhccCccceeecccc
Q 017542           43 VELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRL-STSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEA  121 (369)
Q Consensus        43 ~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  121 (369)
                      ++++.++++++.+|..+.  +++++|+|++|.....+ +..|.++++|++|++++|......+..+..+++|++|++++|
T Consensus        11 ~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            456777777777776543  57788888887665433 345667778888888777666666677777777777777766


Q ss_pred             ccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCC
Q 017542          122 SNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIP  172 (369)
Q Consensus       122 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  172 (369)
                      +.....+.+|.++++|++|++++|......+..+..+++|+++++++|.+.
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            555444556666777777777765443333344555555555555555443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=2.1e-13  Score=100.95  Aligned_cols=97  Identities=24%  Similarity=0.281  Sum_probs=64.4

Q ss_pred             hhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCc
Q 017542          163 RLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIES  242 (369)
Q Consensus       163 ~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  242 (369)
                      .|++++|.++.++ .+..+++|++|++++|....+|+.+..+++|+.|++++|.+.+++. +..+++|++|++++|.++.
T Consensus         2 ~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~-~~~l~~L~~L~l~~N~i~~   79 (124)
T d1dcea3           2 VLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-VANLPRLQELLLCNNRLQQ   79 (124)
T ss_dssp             EEECTTSCCSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCCS
T ss_pred             EEEcCCCCCCCCc-ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCc-cccccccCeEECCCCccCC
Confidence            4566666666554 3566667777777777766666666667777777777777766543 5666777777777777765


Q ss_pred             cc--hhhccCCcCcEecccCC
Q 017542          243 LP--TSISQLSRLRWLYLVNC  261 (369)
Q Consensus       243 ~~--~~~~~~~~L~~L~l~~~  261 (369)
                      ++  ..++.+++|++|++++|
T Consensus        80 ~~~~~~l~~~~~L~~L~l~~N  100 (124)
T d1dcea3          80 SAAIQPLVSCPRLVLLNLQGN  100 (124)
T ss_dssp             SSTTGGGGGCTTCCEEECTTS
T ss_pred             CCCchhhcCCCCCCEEECCCC
Confidence            54  34566677777777776

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.3e-13  Score=105.92  Aligned_cols=128  Identities=13%  Similarity=0.034  Sum_probs=86.5

Q ss_pred             CCCCCCCCCccEEecCCCCCccccCCccC---CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCC
Q 017542           12 FPQNIHFISSIKIDCYKCVNLREFPRISG---NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKS   88 (369)
Q Consensus        12 ~p~~~~~~~L~~L~l~~~~~l~~~~~~~~---~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~   88 (369)
                      .|....+..+++|++++|. +..++....   +|+.|++++|.++.++. +..+++|++|++++|......+..+..+++
T Consensus        11 ~~~~~n~~~lr~L~L~~n~-I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~-~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~   88 (162)
T d1a9na_          11 AAQYTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRKLDG-FPLLRRLKTLLVNNNRICRIGEGLDQALPD   88 (162)
T ss_dssp             SCEEECTTSCEEEECTTSC-CCSCCCGGGGTTCCSEEECCSSCCCEECC-CCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hHhccCcCcCcEEECCCCC-CCccCccccccccCCEEECCCCCCCccCC-cccCcchhhhhcccccccCCCccccccccc
Confidence            4444567778888888887 777765432   78888888888887754 777888888888887654433334456888


Q ss_pred             CcEEecCCCcCCccC-chhhhccCccceeecccccccccc---chhhhcCCCCCeEe
Q 017542           89 LRSLDLSYCINLESF-PEILEKMELLEEINLEEASNIKEL---PSSIENLEGLKQLK  141 (369)
Q Consensus        89 L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~l~~L~~L~  141 (369)
                      |++|++++|...... ...+..+++|++|++++|+.....   +..+..+++|+.|+
T Consensus        89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            888888887543321 135677888888888877643321   12456677777776

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=8.5e-14  Score=108.38  Aligned_cols=105  Identities=20%  Similarity=0.232  Sum_probs=67.2

Q ss_pred             CCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCC-CCCCCCCEEE
Q 017542          156 GNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDI-GCLSSLESLN  234 (369)
Q Consensus       156 ~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~  234 (369)
                      .++.++++|++++|.++.++..+..+++|+.|++++|....++ .+..+++|+.|++++|.+..++..+ ..+++|++|+
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             cCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCccccccccccccce
Confidence            3444566666666666666554455666777777777665553 3566677777777777776655443 4567777777


Q ss_pred             ccCCcCCccch--hhccCCcCcEecccCC
Q 017542          235 LSGNNIESLPT--SISQLSRLRWLYLVNC  261 (369)
Q Consensus       235 l~~~~l~~~~~--~~~~~~~L~~L~l~~~  261 (369)
                      +++|.++++++  .+..+++|++|++++|
T Consensus        94 L~~N~i~~~~~l~~l~~l~~L~~L~l~~N  122 (162)
T d1a9na_          94 LTNNSLVELGDLDPLASLKSLTYLCILRN  122 (162)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSS
T ss_pred             eccccccccccccccccccccchhhcCCC
Confidence            77777765542  4566777777777777

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=4.6e-13  Score=99.10  Aligned_cols=116  Identities=20%  Similarity=0.187  Sum_probs=89.0

Q ss_pred             CeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCC
Q 017542          138 KQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEI  217 (369)
Q Consensus       138 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  217 (369)
                      |.|++++|+ ++.++ .+..+++|++|++++|.+..+|..+..+++|+.|++++|....++. +..+++|+.|++++|++
T Consensus         1 R~L~Ls~n~-l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~-~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3           1 RVLHLAHKD-LTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-VANLPRLQELLLCNNRL   77 (124)
T ss_dssp             SEEECTTSC-CSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCC
T ss_pred             CEEEcCCCC-CCCCc-ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCc-cccccccCeEECCCCcc
Confidence            456777744 44554 3677888888888888888888788888899999999988877764 77889999999999998


Q ss_pred             ccCCC--CCCCCCCCCEEEccCCcCCccc---h-hhccCCcCcEe
Q 017542          218 MEIPP--DIGCLSSLESLNLSGNNIESLP---T-SISQLSRLRWL  256 (369)
Q Consensus       218 ~~~~~--~~~~~~~L~~L~l~~~~l~~~~---~-~~~~~~~L~~L  256 (369)
                      ..++.  .+..+++|++|++++|.++..+   . ....+|+|+.+
T Consensus        78 ~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          78 QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            87653  4677899999999999887443   2 23557777765

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.36  E-value=6.7e-14  Score=123.37  Aligned_cols=221  Identities=20%  Similarity=0.177  Sum_probs=114.4

Q ss_pred             CeeEEecCCccCc-----ccCccCCCCCCCCEEeCcCCcccc----------cccccccCCCCCcEEecCCCcCCcc---
Q 017542           41 NVVELNLMCTPIE-----EVPLSIECLPNLETLEMSFCNSLK----------RLSTSICKLKSLRSLDLSYCINLES---  102 (369)
Q Consensus        41 ~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~~~----------~~~~~~~~~~~L~~L~l~~~~~~~~---  102 (369)
                      .|+.|++++|.+.     .+-..+...++|+.++++++....          .+...+..+++|+.|++++|.....   
T Consensus        32 ~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  111 (344)
T d2ca6a1          32 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE  111 (344)
T ss_dssp             CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred             CCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccccc
Confidence            5666666666553     233345556677777776543211          1122334566677777776644332   


Q ss_pred             -CchhhhccCccceeeccccccccc----cchh---------hhcCCCCCeEeecCCCCCCC----CCcccCCCcchhhh
Q 017542          103 -FPEILEKMELLEEINLEEASNIKE----LPSS---------IENLEGLKQLKLTGCTKLGS----LPESLGNLKSLERL  164 (369)
Q Consensus       103 -~~~~~~~l~~L~~L~l~~~~~~~~----~~~~---------~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L  164 (369)
                       +...+..+++|++|++++|.....    +...         ....+.|+.+.++++.....    +...+...+.++++
T Consensus       112 ~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L  191 (344)
T d2ca6a1         112 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV  191 (344)
T ss_dssp             HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEE
T ss_pred             chhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhccc
Confidence             233445566777777765543211    0001         12345666776666432211    11123344556666


Q ss_pred             ccCcccCCC------CCcccccCCCCcEEeecCCCCCC-----CCccccCCCCCcEEeccCCCCcc-----CCCCCC--C
Q 017542          165 HAGLLAIPQ------APSSIVDLNKLETLSLFECRGLV-----LPPLLSGLSSLKKLELGDCEIME-----IPPDIG--C  226 (369)
Q Consensus       165 ~l~~~~~~~------~~~~l~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~--~  226 (369)
                      ++++|.+..      +...+..+++|+.|++++|..+.     +...+..+++|++|++++|.+.+     +...+.  .
T Consensus       192 ~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~  271 (344)
T d2ca6a1         192 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE  271 (344)
T ss_dssp             ECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCS
T ss_pred             ccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhcc
Confidence            666665541      12334556677777777666321     22345566677777777776654     111111  2


Q ss_pred             CCCCCEEEccCCcCCc-----cchhh-ccCCcCcEecccCC
Q 017542          227 LSSLESLNLSGNNIES-----LPTSI-SQLSRLRWLYLVNC  261 (369)
Q Consensus       227 ~~~L~~L~l~~~~l~~-----~~~~~-~~~~~L~~L~l~~~  261 (369)
                      .+.|++|++++|.++.     +...+ ..+++|++|++++|
T Consensus       272 ~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N  312 (344)
T d2ca6a1         272 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN  312 (344)
T ss_dssp             SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             CCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCC
Confidence            3467777777776652     22333 24566777777766

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=5.2e-14  Score=128.62  Aligned_cols=81  Identities=21%  Similarity=0.301  Sum_probs=43.4

Q ss_pred             CCCCccEEecCCCCCccc-----cCC---ccCCeeEEecCCccCcc-----cCccCC-CCCCCCEEeCcCCccccc----
Q 017542           17 HFISSIKIDCYKCVNLRE-----FPR---ISGNVVELNLMCTPIEE-----VPLSIE-CLPNLETLEMSFCNSLKR----   78 (369)
Q Consensus        17 ~~~~L~~L~l~~~~~l~~-----~~~---~~~~L~~L~l~~~~~~~-----l~~~~~-~~~~L~~L~l~~~~~~~~----   78 (369)
                      .+++++.|++++|. +.+     ++.   ..++|++|++++|.++.     +...+. ...+|++|++++|...+.    
T Consensus        25 ~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~  103 (460)
T d1z7xw1          25 LLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV  103 (460)
T ss_dssp             HHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             hCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCcccccccc
Confidence            35666677777765 332     221   22267777776666642     122222 224577777777654322    


Q ss_pred             ccccccCCCCCcEEecCCCc
Q 017542           79 LSTSICKLKSLRSLDLSYCI   98 (369)
Q Consensus        79 ~~~~~~~~~~L~~L~l~~~~   98 (369)
                      ++..+..+++|++|++++|.
T Consensus       104 l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1         104 LSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             HHHHTTSCTTCCEEECCSSB
T ss_pred             ccchhhcccccccccccccc
Confidence            23345556677777776654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.26  E-value=2.1e-13  Score=120.08  Aligned_cols=228  Identities=17%  Similarity=0.085  Sum_probs=149.1

Q ss_pred             ccCccCCCCCCCCEEeCcCCcccc----cccccccCCCCCcEEecCCCcCCcc----------CchhhhccCccceeecc
Q 017542           54 EVPLSIECLPNLETLEMSFCNSLK----RLSTSICKLKSLRSLDLSYCINLES----------FPEILEKMELLEEINLE  119 (369)
Q Consensus        54 ~l~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----------~~~~~~~l~~L~~L~l~  119 (369)
                      .+...+.....|+.|++++|....    .+...+...++|+.++++++.....          +...+..+++|++|+++
T Consensus        22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~  101 (344)
T d2ca6a1          22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  101 (344)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence            444456678899999999986533    2334566789999999987643211          22345668899999999


Q ss_pred             ccccccc----cchhhhcCCCCCeEeecCCCCCCC----CCcc---------cCCCcchhhhccCcccCCC-----CCcc
Q 017542          120 EASNIKE----LPSSIENLEGLKQLKLTGCTKLGS----LPES---------LGNLKSLERLHAGLLAIPQ-----APSS  177 (369)
Q Consensus       120 ~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~---------~~~l~~L~~L~l~~~~~~~-----~~~~  177 (369)
                      +|.....    +...+...++|++|++++|.....    +...         ....+.|+.+.++++.+..     +...
T Consensus       102 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~  181 (344)
T d2ca6a1         102 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  181 (344)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             ccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccch
Confidence            8865442    444566789999999998753211    0000         1234567777777776542     2233


Q ss_pred             cccCCCCcEEeecCCCCCC------CCccccCCCCCcEEeccCCCCcc-----CCCCCCCCCCCCEEEccCCcCCc----
Q 017542          178 IVDLNKLETLSLFECRGLV------LPPLLSGLSSLKKLELGDCEIME-----IPPDIGCLSSLESLNLSGNNIES----  242 (369)
Q Consensus       178 l~~~~~L~~L~l~~~~~~~------~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~l~~----  242 (369)
                      +..++.|+.|++++|....      +...+..+++|+.|++++|.+..     +...+..+++|++|++++|.+++    
T Consensus       182 l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~  261 (344)
T d2ca6a1         182 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  261 (344)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             hhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhH
Confidence            5567889999998887432      22346677889999999888754     33345677889999999998873    


Q ss_pred             -cchhhc--cCCcCcEecccCCccccc-----CCC----CCcccceeccccc
Q 017542          243 -LPTSIS--QLSRLRWLYLVNCVKLQS-----LPE----LPLLLVMLGASDC  282 (369)
Q Consensus       243 -~~~~~~--~~~~L~~L~l~~~~~l~~-----~~~----~~~~L~~L~l~~c  282 (369)
                       +...+.  ..+.|++|++++|. ++.     +..    ..++|++|++.++
T Consensus       262 ~l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l~~N  312 (344)
T d2ca6a1         262 AVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGN  312 (344)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             HHHHHhhhccCCCCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEEECCCC
Confidence             223333  24678999999884 442     111    2345777777654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.21  E-value=3.4e-14  Score=114.61  Aligned_cols=139  Identities=20%  Similarity=0.162  Sum_probs=87.4

Q ss_pred             CCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCC
Q 017542          149 GSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLS  228 (369)
Q Consensus       149 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  228 (369)
                      ..++..+..+++|++|++++|.+..++ .+..+++|+.|++++|....++.....+++|+.|++++|.+..++ .+..++
T Consensus        38 ~~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l~  115 (198)
T d1m9la_          38 EKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLV  115 (198)
T ss_dssp             CCCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH-HHHHHH
T ss_pred             hhhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhcccccccccccccccccccccccccccccccc-cccccc
Confidence            334445556666666777766666653 466777777777777776666654444567788888888777653 255667


Q ss_pred             CCCEEEccCCcCCccc--hhhccCCcCcEecccCCcccccCCCCC--cccceeccccccccccCC
Q 017542          229 SLESLNLSGNNIESLP--TSISQLSRLRWLYLVNCVKLQSLPELP--LLLVMLGASDCKRLQFLP  289 (369)
Q Consensus       229 ~L~~L~l~~~~l~~~~--~~~~~~~~L~~L~l~~~~~l~~~~~~~--~~L~~L~l~~c~~L~~l~  289 (369)
                      +|++|++++|.+++++  ..+..+++|++|++++|+-....+...  ..++...+..+|+|+.++
T Consensus       116 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            8888888888887765  356778888888888875222211111  122333345556665554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=8e-13  Score=120.54  Aligned_cols=103  Identities=13%  Similarity=0.146  Sum_probs=74.5

Q ss_pred             CccEEecCCCCCccc-----cCCccCCeeEEecCCccCc-----ccCccCCCCCCCCEEeCcCCccccc----cccccc-
Q 017542           20 SSIKIDCYKCVNLRE-----FPRISGNVVELNLMCTPIE-----EVPLSIECLPNLETLEMSFCNSLKR----LSTSIC-   84 (369)
Q Consensus        20 ~L~~L~l~~~~~l~~-----~~~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~-   84 (369)
                      +|+.|+++++. +.+     +.+.+.++++|+++++.++     .+...+..+++|++|++++|.....    +...+. 
T Consensus         3 ~l~~ld~~~~~-i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           3 DIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEESCC-CCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCEEEeeCCc-CChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            58999999888 544     2234449999999988886     3344567899999999999865422    222222 


Q ss_pred             CCCCCcEEecCCCcCCcc----CchhhhccCccceeecccccc
Q 017542           85 KLKSLRSLDLSYCINLES----FPEILEKMELLEEINLEEASN  123 (369)
Q Consensus        85 ~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~  123 (369)
                      ...+|++|++++|.....    ++..+..+++|++|++++|..
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccc
Confidence            235899999999875433    345677899999999998764

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.17  E-value=1.2e-13  Score=111.31  Aligned_cols=142  Identities=20%  Similarity=0.248  Sum_probs=72.1

Q ss_pred             CcEEecCCC-cCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccC
Q 017542           89 LRSLDLSYC-INLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAG  167 (369)
Q Consensus        89 L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  167 (369)
                      ++.+++.+. +....++..+..+++|++|++++|. ++.++ .+..+++|+.|++++|                      
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~-I~~i~-~l~~l~~L~~L~Ls~N----------------------   80 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRN----------------------   80 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEE-ESCCC-CHHHHTTCCEEECCEE----------------------
T ss_pred             cceeeeecccCchhhhhhHHhcccccceeECcccC-CCCcc-cccCCccccChhhccc----------------------
Confidence            444444432 2233445556666666666666544 23332 3555566666666554                      


Q ss_pred             cccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCC--CCCCCCCCCCEEEccCCcCCccch
Q 017542          168 LLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIP--PDIGCLSSLESLNLSGNNIESLPT  245 (369)
Q Consensus       168 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~l~~~~~  245 (369)
                        .+..++.....+++|+.|++++|....++. +..+++|+.|++++|.+..++  ..+..+++|++|++++|.+...+.
T Consensus        81 --~i~~i~~~~~~~~~L~~L~l~~N~i~~l~~-~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  157 (198)
T d1m9la_          81 --LIKKIENLDAVADTLEELWISYNQIASLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             --EECSCSSHHHHHHHCCEEECSEEECCCHHH-HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHC
T ss_pred             --cccccccccccccccccccccccccccccc-ccccccccccccccchhccccccccccCCCccceeecCCCccccCcc
Confidence              333333222233345555555554443322 344455666666666555532  234556666666666665542211


Q ss_pred             -----------hhccCCcCcEec
Q 017542          246 -----------SISQLSRLRWLY  257 (369)
Q Consensus       246 -----------~~~~~~~L~~L~  257 (369)
                                 .+..+|+|+.||
T Consensus       158 ~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         158 ENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             TTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccchhhHHHHHHHHCCCcCEeC
Confidence                       145677777775

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=6.9e-10  Score=85.16  Aligned_cols=101  Identities=22%  Similarity=0.127  Sum_probs=66.6

Q ss_pred             hhhccCcccCCCCCcccccCCCCcEEeecCCC-CCCCC-ccccCCCCCcEEeccCCCCccCC-CCCCCCCCCCEEEccCC
Q 017542          162 ERLHAGLLAIPQAPSSIVDLNKLETLSLFECR-GLVLP-PLLSGLSSLKKLELGDCEIMEIP-PDIGCLSSLESLNLSGN  238 (369)
Q Consensus       162 ~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~-~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~  238 (369)
                      +.+++.++.....|..+..+++|++|++.++. ...++ ..|.++++|+.|++++|++..++ ..+..+++|++|+|++|
T Consensus        11 ~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             CeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence            34555555555666666666777777776554 55554 34666777777777777777753 34666777777777777


Q ss_pred             cCCccchhhccCCcCcEecccCCc
Q 017542          239 NIESLPTSISQLSRLRWLYLVNCV  262 (369)
Q Consensus       239 ~l~~~~~~~~~~~~L~~L~l~~~~  262 (369)
                      +++.++.......+|++|++++|+
T Consensus        91 ~l~~l~~~~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          91 ALESLSWKTVQGLSLQELVLSGNP  114 (156)
T ss_dssp             CCSCCCSTTTCSCCCCEEECCSSC
T ss_pred             CCcccChhhhccccccccccCCCc
Confidence            777777555555567777777774

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=7.5e-09  Score=79.21  Aligned_cols=102  Identities=19%  Similarity=0.099  Sum_probs=55.2

Q ss_pred             EecCCccCcccCccCCCCCCCCEEeCcCCccccccc-ccccCCCCCcEEecCCCcCCccCchhhhccCccceeecccccc
Q 017542           45 LNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLS-TSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASN  123 (369)
Q Consensus        45 L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  123 (369)
                      ++.+.+.+.++|..+..+++|++|++.+++.++.++ ..|.++++|+.|++++|......+..|..+++|++|++++|+.
T Consensus        13 l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l   92 (156)
T d2ifga3          13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL   92 (156)
T ss_dssp             EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred             EEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCC
Confidence            444555555555555556666666665554444443 3455566666666666554444455566666666666665543


Q ss_pred             ccccchhhhcCCCCCeEeecCCCC
Q 017542          124 IKELPSSIENLEGLKQLKLTGCTK  147 (369)
Q Consensus       124 ~~~~~~~~~~l~~L~~L~l~~~~~  147 (369)
                      . .++.......+|++|++++|+.
T Consensus        93 ~-~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          93 E-SLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             S-CCCSTTTCSCCCCEEECCSSCC
T ss_pred             c-ccChhhhccccccccccCCCcc
Confidence            3 3333222333566666666543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=2.5e-07  Score=71.03  Aligned_cols=63  Identities=25%  Similarity=0.132  Sum_probs=27.4

Q ss_pred             CCCCCCEEeCcCCcccc--cccccccCCCCCcEEecCCCcCCccCchhhhccCccceeecccccc
Q 017542           61 CLPNLETLEMSFCNSLK--RLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASN  123 (369)
Q Consensus        61 ~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  123 (369)
                      .+++|++|++++|....  .++..+..+++|+.|++++|...+..+.......+|+++++.+|+.
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl  127 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL  127 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTT
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCc
Confidence            45555555555544322  1222334455555555555433322111222233455555555543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=2.6e-06  Score=65.08  Aligned_cols=37  Identities=27%  Similarity=0.434  Sum_probs=15.9

Q ss_pred             hccCccceeecccccccc--ccchhhhcCCCCCeEeecC
Q 017542          108 EKMELLEEINLEEASNIK--ELPSSIENLEGLKQLKLTG  144 (369)
Q Consensus       108 ~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~  144 (369)
                      ..+++|++|++++|+...  .++..+..+++|+.|++++
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~  100 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG  100 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTT
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCccccccccc
Confidence            344555555555443322  1222333444455554444

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.65  E-value=3.9e-06  Score=64.44  Aligned_cols=82  Identities=13%  Similarity=0.074  Sum_probs=39.1

Q ss_pred             cCCCCcEEeecCCCCC-----CCCccccCCCCCcEEeccCCCCcc-----CCCCCCCCCCCCEEEccCCcCCc-------
Q 017542          180 DLNKLETLSLFECRGL-----VLPPLLSGLSSLKKLELGDCEIME-----IPPDIGCLSSLESLNLSGNNIES-------  242 (369)
Q Consensus       180 ~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~l~~-------  242 (369)
                      ..+.|++|++++|...     .+...+...+.|++|++++|.+..     +...+...++|++|++++|.+..       
T Consensus        42 ~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~  121 (167)
T d1pgva_          42 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEM  121 (167)
T ss_dssp             TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHH
T ss_pred             hCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHH
Confidence            3345555555555422     111223334556666666665544     22224445566666666654332       


Q ss_pred             -cchhhccCCcCcEecccCC
Q 017542          243 -LPTSISQLSRLRWLYLVNC  261 (369)
Q Consensus       243 -~~~~~~~~~~L~~L~l~~~  261 (369)
                       +...+...++|++|+++.+
T Consensus       122 ~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_         122 DMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHhCCCccEeeCcCC
Confidence             2223344555655555443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.60  E-value=2.3e-05  Score=59.97  Aligned_cols=86  Identities=14%  Similarity=0.079  Sum_probs=42.0

Q ss_pred             CCCCCCCCEEeCcCCccccc----ccccccCCCCCcEEecCCCcCCcc----CchhhhccCccceeecccccccc-----
Q 017542           59 IECLPNLETLEMSFCNSLKR----LSTSICKLKSLRSLDLSYCINLES----FPEILEKMELLEEINLEEASNIK-----  125 (369)
Q Consensus        59 ~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~-----  125 (369)
                      +...++|++|++++|.....    +...+...+.|++|++++|.....    +...+...+.|++|+++++....     
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~  119 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV  119 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHH
Confidence            44455666666666544321    222334455666666666544322    22334445556666665442211     


Q ss_pred             --ccchhhhcCCCCCeEeecC
Q 017542          126 --ELPSSIENLEGLKQLKLTG  144 (369)
Q Consensus       126 --~~~~~~~~l~~L~~L~l~~  144 (369)
                        .+...+...++|+.|+++.
T Consensus       120 ~~~l~~~L~~n~sL~~l~l~~  140 (167)
T d1pgva_         120 EMDMMMAIEENESLLRVGISF  140 (167)
T ss_dssp             HHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHHHHHHHhCCCccEeeCcC
Confidence              1233444556666666544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.09  E-value=0.00012  Score=55.69  Aligned_cols=39  Identities=13%  Similarity=0.167  Sum_probs=17.3

Q ss_pred             cCCCCCcEEecCCCcCCcc----CchhhhccCccceeeccccc
Q 017542           84 CKLKSLRSLDLSYCINLES----FPEILEKMELLEEINLEEAS  122 (369)
Q Consensus        84 ~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~  122 (369)
                      ...++|++|++++|.....    +...+...+.++.+++.+|.
T Consensus        43 ~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~   85 (166)
T d1io0a_          43 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF   85 (166)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             hcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccc
Confidence            3445555555555433221    22233444455555555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.07  E-value=0.00018  Score=54.66  Aligned_cols=104  Identities=16%  Similarity=0.142  Sum_probs=58.4

Q ss_pred             CeeEEecCC-ccCc-----ccCccCCCCCCCCEEeCcCCccccc----ccccccCCCCCcEEecCCCcCCcc----Cchh
Q 017542           41 NVVELNLMC-TPIE-----EVPLSIECLPNLETLEMSFCNSLKR----LSTSICKLKSLRSLDLSYCINLES----FPEI  106 (369)
Q Consensus        41 ~L~~L~l~~-~~~~-----~l~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~  106 (369)
                      .|++|++++ +.++     .+-..+..+++|++|++++|.....    +...+...+.++.+++++|.....    +...
T Consensus        18 ~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~   97 (166)
T d1io0a_          18 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA   97 (166)
T ss_dssp             TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred             CCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHH
Confidence            566666654 3343     2223345667777777777654332    223445567777787777655433    2344


Q ss_pred             hhccCccceeeccc--ccccc----ccchhhhcCCCCCeEeecC
Q 017542          107 LEKMELLEEINLEE--ASNIK----ELPSSIENLEGLKQLKLTG  144 (369)
Q Consensus       107 ~~~l~~L~~L~l~~--~~~~~----~~~~~~~~l~~L~~L~l~~  144 (369)
                      +...+.|+.+++..  +....    .+...+...++|++|++..
T Consensus        98 l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_          98 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence            55667777655542  22222    2344455677777777765