Citrus Sinensis ID: 017592

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
MEEGWAFWERRCGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDTVDFTSD
ccccccccccccccHHEEEEHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHcccccccccccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHcc
cccccEEEccccHHHHHEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHHHccccccccHccccccHccccccccccHHHHHHHHHHHHHccccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHccccccccccccEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHEEEEEEEcHHHcHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHcccccccHHHHHcc
MEEGWAFWERRCGHVFLSWFlefvppsnrgMWMVIFSSFWTIGSVSEAIGAWiimprldwrwllglssipSFILLAFlgfqpesprylclkgRTAEAHRALEKIAQVNktklpngklvarrstlptgerappELVHLLSsnggnkttegkSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELssldtrcrsplmfshhpqdanlYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAeiyptsvrstgagaanamgrigGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMlipfetkgqelsdtvdftsd
MEEGWAFWERRCGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIaqvnktklpngklvarrstlptgerappELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLipfetkgqelsdtvdftsd
MEEGWAFWERRCGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEgksglslflmlfssklARTTIllwlllFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQmtavvllvvvivtsilsvmlIPFETKGQELSDTVDFTSD
***GWAFWERRCGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQ*********************************************GLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET**************
**EGWAFWERRCGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVA**********************************SLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSD*******
MEEGWAFWERRCGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQE**********
**EGWAFWERRCGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNG*L***************ELVHLLS*N******EGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDTVD****
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEEGWAFWERRCGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDTVDFTSD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query369 2.2.26 [Sep-21-2011]
Q940M4500 Organic cation/carnitine yes no 0.948 0.7 0.491 4e-88
Q2XWK0548 Synaptic vesicle 2-relate N/A no 0.842 0.567 0.319 1e-39
Q5R5T8548 Synaptic vesicle 2-relate yes no 0.850 0.572 0.307 2e-39
Q8N4V2548 Synaptic vesicle 2-relate yes no 0.850 0.572 0.307 3e-39
P30638520 Putative transporter ZK63 yes no 0.859 0.609 0.307 5e-39
Q1JP63548 Synaptic vesicle 2-relate yes no 0.850 0.572 0.307 6e-39
Q1LVS8506 Putative transporter SVOP no no 0.840 0.612 0.321 5e-37
Q9Z2I7548 Synaptic vesicle 2-relate yes no 0.850 0.572 0.307 5e-36
Q8N434492 Putative transporter SVOP no no 0.834 0.626 0.315 7e-36
Q8BFT9548 Synaptic vesicle 2-relate yes no 0.850 0.572 0.307 1e-35
>sp|Q940M4|OCT7_ARATH Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana GN=OCT7 PE=2 SV=1 Back     alignment and function desciption
 Score =  325 bits (833), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 178/362 (49%), Positives = 238/362 (65%), Gaps = 12/362 (3%)

Query: 18  SWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAF 77
           SW+LEF+P  +RG WMV+FS+FWT+G++ EA  AW++MPRL WRWLL  SS+PS +LL F
Sbjct: 135 SWYLEFIPAPSRGTWMVVFSAFWTVGTIFEASLAWLVMPRLGWRWLLAFSSVPSSLLLLF 194

Query: 78  LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNG-KLVARRSTLPTGERAPPELVH 136
             +  ESPRYL L+GR AEA   LEKIA++NKT+LP G       + L   +  P E  H
Sbjct: 195 YRWTSESPRYLILQGRKAEALAILEKIARMNKTQLPPGVLSSELETELEENKNIPTENTH 254

Query: 137 LLSSNGGNKTT---------EGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVL 187
           LL +    +           + + G SL L L S  L + T+LLW++ FGN+FAYY VVL
Sbjct: 255 LLKAGESGEAVAVSKIVLKADKEPGFSL-LALLSPTLMKRTLLLWVVFFGNAFAYYGVVL 313

Query: 188 LISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITI 247
           L +EL++   RC        +  D N Y D FI S AE PGLL++A +VD  GRK S+  
Sbjct: 314 LTTELNNSHNRCYPTEKQLRNSNDVN-YRDVFIASFAEFPGLLISAAMVDRLGRKASMAS 372

Query: 248 MFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAAN 307
           M    C+FLLPL+++QS  +TT LLFG R+C+  AFTV  IYA EIYPT+VR+TG G  +
Sbjct: 373 MLFTCCIFLLPLLSHQSPFITTVLLFGGRICISAAFTVVYIYAPEIYPTAVRTTGVGVGS 432

Query: 308 AMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDTVDFT 367
           ++GRIGG++CPLVAV LV  CHQ  AV+L  VVI+ S + V L PFET G++L+D++  +
Sbjct: 433 SVGRIGGILCPLVAVGLVHGCHQTIAVLLFEVVILVSGICVCLFPFETSGRDLTDSISAS 492

Query: 368 SD 369
            +
Sbjct: 493 KE 494
High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations.
Arabidopsis thaliana (taxid: 3702)
>sp|Q2XWK0|SVOP_XENLA Synaptic vesicle 2-related protein OS=Xenopus laevis GN=svop PE=2 SV=1 Back     alignment and function description
>sp|Q5R5T8|SVOP_PONAB Synaptic vesicle 2-related protein OS=Pongo abelii GN=SVOP PE=2 SV=1 Back     alignment and function description
>sp|Q8N4V2|SVOP_HUMAN Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1 Back     alignment and function description
>sp|P30638|YOU1_CAEEL Putative transporter ZK637.1 OS=Caenorhabditis elegans GN=ZK637.1 PE=3 SV=5 Back     alignment and function description
>sp|Q1JP63|SVOP_BOVIN Synaptic vesicle 2-related protein OS=Bos taurus GN=SVOP PE=2 SV=1 Back     alignment and function description
>sp|Q1LVS8|SVOPL_DANRE Putative transporter SVOPL OS=Danio rerio GN=svopl PE=2 SV=1 Back     alignment and function description
>sp|Q9Z2I7|SVOP_RAT Synaptic vesicle 2-related protein OS=Rattus norvegicus GN=Svop PE=1 SV=1 Back     alignment and function description
>sp|Q8N434|SVOPL_HUMAN Putative transporter SVOPL OS=Homo sapiens GN=SVOPL PE=2 SV=2 Back     alignment and function description
>sp|Q8BFT9|SVOP_MOUSE Synaptic vesicle 2-related protein OS=Mus musculus GN=Svop PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query369
383932368 482 MFS [Gossypium hirsutum] 0.945 0.724 0.613 1e-112
224118680 492 predicted protein [Populus trichocarpa] 0.945 0.709 0.608 1e-109
255574249 497 sugar transporter, putative [Ricinus com 0.945 0.702 0.593 1e-108
224118546 493 predicted protein [Populus trichocarpa] 0.959 0.718 0.560 1e-104
255573803 498 sugar transporter, putative [Ricinus com 0.951 0.704 0.553 1e-99
224095094 485 predicted protein [Populus trichocarpa] 0.924 0.703 0.526 1e-97
357467655 499 Synaptic vesicle 2-related protein [Medi 0.937 0.693 0.535 2e-97
224122710 503 predicted protein [Populus trichocarpa] 0.951 0.697 0.516 2e-96
225443470 495 PREDICTED: synaptic vesicle 2-related pr 0.940 0.701 0.549 4e-96
222629519424 hypothetical protein OsJ_16102 [Oryza sa 0.945 0.823 0.516 2e-95
>gi|383932368|gb|AFH57281.1| MFS [Gossypium hirsutum] Back     alignment and taxonomy information
 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/349 (61%), Positives = 262/349 (75%)

Query: 15  VFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFIL 74
           VFLSWFLEF+P SNRGMWMV+FS+FWT GS+ EA  AWI+MPRL+WRW+L  S++PSF L
Sbjct: 133 VFLSWFLEFIPASNRGMWMVVFSTFWTFGSIFEATLAWIVMPRLNWRWVLAFSAVPSFAL 192

Query: 75  LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPEL 134
           L   G  PESPRYLC+KG T++A R LEKIA VN+TKLP G LV+ RS     E AP E 
Sbjct: 193 LILYGVAPESPRYLCMKGNTSDALRILEKIASVNQTKLPPGVLVSGRSNDKDEESAPSEN 252

Query: 135 VHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSS 194
              L  +    TT+ KSG S F MLFSSKL RTT+LLW+L FG+SF+YY ++LL S+LSS
Sbjct: 253 TAPLLPSLSKSTTQSKSGFSSFFMLFSSKLIRTTLLLWVLFFGDSFSYYGIILLTSKLSS 312

Query: 195 LDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCL 254
             + C   L  + +PQD  LY++ FITS+AE+PGLLL+AILVD  GRK S+ IMF L+ +
Sbjct: 313 GQSTCFPSLQSNINPQDDGLYLNAFITSMAELPGLLLSAILVDRVGRKHSMAIMFGLAFI 372

Query: 255 FLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGG 314
           FL PL+  Q  +LTT LLFGARM  MG FTV+ IY+ E+YPTSVR+TGAG A+A+GRIGG
Sbjct: 373 FLTPLLIQQPAVLTTCLLFGARMNAMGTFTVASIYSPELYPTSVRTTGAGVASAIGRIGG 432

Query: 315 MVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDT 363
           MVCPLVAV LV  CHQ  AV L +V IV SI+ + L P++TKG+ELSDT
Sbjct: 433 MVCPLVAVGLVNECHQTAAVALFLVAIVVSIVCIQLFPYDTKGRELSDT 481

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224118680|ref|XP_002331421.1| predicted protein [Populus trichocarpa] gi|222873635|gb|EEF10766.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255574249|ref|XP_002528039.1| sugar transporter, putative [Ricinus communis] gi|223532569|gb|EEF34357.1| sugar transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224118546|ref|XP_002331389.1| predicted protein [Populus trichocarpa] gi|222873603|gb|EEF10734.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255573803|ref|XP_002527821.1| sugar transporter, putative [Ricinus communis] gi|223532795|gb|EEF34573.1| sugar transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224095094|ref|XP_002310344.1| predicted protein [Populus trichocarpa] gi|222853247|gb|EEE90794.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357467655|ref|XP_003604112.1| Synaptic vesicle 2-related protein [Medicago truncatula] gi|355505167|gb|AES86309.1| Synaptic vesicle 2-related protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|224122710|ref|XP_002330449.1| predicted protein [Populus trichocarpa] gi|222871861|gb|EEF08992.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225443470|ref|XP_002273636.1| PREDICTED: synaptic vesicle 2-related protein [Vitis vinifera] gi|297735684|emb|CBI18371.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|222629519|gb|EEE61651.1| hypothetical protein OsJ_16102 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query369
TAIR|locus:2089270500 NiaP "nicotinate transporter" 0.964 0.712 0.450 1.8e-78
ZFIN|ZDB-GENE-070705-359411 svopb "SV2 related protein hom 0.528 0.474 0.289 9.7e-38
WB|WBGene00014021520 svop-1 [Caenorhabditis elegans 0.531 0.376 0.282 9.7e-35
ZFIN|ZDB-GENE-060526-336549 svopa "SV2 related protein hom 0.430 0.289 0.305 8.5e-34
UNIPROTKB|F6XK47483 SVOP "Uncharacterized protein" 0.528 0.403 0.285 1.5e-33
UNIPROTKB|E2QZ16548 SVOP "Uncharacterized protein" 0.528 0.355 0.285 2.9e-33
UNIPROTKB|Q8N4V2548 SVOP "Synaptic vesicle 2-relat 0.528 0.355 0.285 3.6e-33
UNIPROTKB|G3MZU5547 SVOP "Synaptic vesicle 2-relat 0.523 0.352 0.287 5.6e-33
UNIPROTKB|Q1JP63548 SVOP "Synaptic vesicle 2-relat 0.523 0.352 0.287 5.7e-33
UNIPROTKB|F1RGB1548 SVOP "Uncharacterized protein" 0.528 0.355 0.285 6.2e-33
TAIR|locus:2089270 NiaP "nicotinate transporter" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 789 (282.8 bits), Expect = 1.8e-78, P = 1.8e-78
 Identities = 165/366 (45%), Positives = 217/366 (59%)

Query:    13 GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSF 72
             G V  SW+LEF+P  +RG WMV+FS+FWT+G++ EA  AW++MPRL WRWLL  SS+PS 
Sbjct:   130 GPVLASWYLEFIPAPSRGTWMVVFSAFWTVGTIFEASLAWLVMPRLGWRWLLAFSSVPSS 189

Query:    73 ILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRST-LPTGERAP 131
             +LL F  +  ESPRYL L+GR AEA   LEKIA++NKT+LP G L +   T L   +  P
Sbjct:   190 LLLLFYRWTSESPRYLILQGRKAEALAILEKIARMNKTQLPPGVLSSELETELEENKNIP 249

Query:   132 PELVHLLSSN-GGNKTTEXXXXXXXXXXXXXXXXA-------RTTIXXXXXXFGNSFAYY 183
              E  HLL +   G                     A       + T+      FGN+FAYY
Sbjct:   250 TENTHLLKAGESGEAVAVSKIVLKADKEPGFSLLALLSPTLMKRTLLLWVVFFGNAFAYY 309

Query:   184 AVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKL 243
              VVLL +EL++   RC        +  D N Y D FI S AE PGLL++A +VD  GRK 
Sbjct:   310 GVVLLTTELNNSHNRCYPTEKQLRNSNDVN-YRDVFIASFAEFPGLLISAAMVDRLGRKA 368

Query:   244 SITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGA 303
             S+  M    C+FLLPL+++QS  +TT LLFG R+C+  AFTV  IYA EIYPT+VR+TG 
Sbjct:   369 SMASMLFTCCIFLLPLLSHQSPFITTVLLFGGRICISAAFTVVYIYAPEIYPTAVRTTGV 428

Query:   304 GAANAMGRIGGMVCPLVAVALVANCHQXXXXXXXXXXXXXXXXXXXXIPFETKGQELSDT 363
             G  +++GRIGG++CPLVAV LV  CHQ                     PFET G++L+D+
Sbjct:   429 GVGSSVGRIGGILCPLVAVGLVHGCHQTIAVLLFEVVILVSGICVCLFPFETSGRDLTDS 488

Query:   364 VDFTSD 369
             +  + +
Sbjct:   489 ISASKE 494
GO:0005215 "transporter activity" evidence=IEA
GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0006810 "transport" evidence=IEA
GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=ISS
GO:0022857 "transmembrane transporter activity" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0090416 "nicotinate transporter activity" evidence=IDA
GO:0090417 "N-methylnicotinate transporter activity" evidence=IDA
GO:2001142 "nicotinate transport" evidence=IDA
GO:2001143 "N-methylnicotinate transport" evidence=IDA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0006865 "amino acid transport" evidence=RCA
GO:0009693 "ethylene biosynthetic process" evidence=RCA
GO:0009827 "plant-type cell wall modification" evidence=RCA
GO:0009860 "pollen tube growth" evidence=RCA
GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0015706 "nitrate transport" evidence=RCA
GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA
ZFIN|ZDB-GENE-070705-359 svopb "SV2 related protein homolog b (rat)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
WB|WBGene00014021 svop-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060526-336 svopa "SV2 related protein homolog a (rat)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F6XK47 SVOP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E2QZ16 SVOP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q8N4V2 SVOP "Synaptic vesicle 2-related protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|G3MZU5 SVOP "Synaptic vesicle 2-related protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q1JP63 SVOP "Synaptic vesicle 2-related protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1RGB1 SVOP "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query369
TIGR00898505 TIGR00898, 2A0119, cation transport protein 4e-56
pfam00083449 pfam00083, Sugar_tr, Sugar (and other) transporter 2e-20
TIGR00895398 TIGR00895, 2A0115, benzoate transport 8e-19
TIGR00879481 TIGR00879, SP, MFS transporter, sugar porter (SP) 2e-15
PRK11551406 PRK11551, PRK11551, putative 3-hydroxyphenylpropio 8e-13
TIGR01299742 TIGR01299, synapt_SV2, synaptic vesicle protein SV 7e-12
cd06174352 cd06174, MFS, The Major Facilitator Superfamily (M 3e-11
TIGR00891405 TIGR00891, 2A0112, putative sialic acid transporte 9e-09
TIGR00887502 TIGR00887, 2A0109, phosphate:H+ symporter 2e-07
PRK10077479 PRK10077, xylE, D-xylose transporter XylE; Provisi 3e-07
TIGR01299742 TIGR01299, synapt_SV2, synaptic vesicle protein SV 2e-06
pfam07690 346 pfam07690, MFS_1, Major Facilitator Superfamily 7e-05
TIGR00883394 TIGR00883, 2A0106, metabolite-proton symporter 1e-04
cd06174 352 cd06174, MFS, The Major Facilitator Superfamily (M 0.001
pfam07690346 pfam07690, MFS_1, Major Facilitator Superfamily 0.001
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein Back     alignment and domain information 
 Score =  190 bits (485), Expect = 4e-56
 Identities = 98/344 (28%), Positives = 155/344 (45%), Gaps = 47/344 (13%)

Query: 22  EFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQ 81
           EF+P   R +   +   F+++G V   + A+ I    DWRWL    S+P+F+      F 
Sbjct: 207 EFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP---DWRWLQLAVSLPTFLFFLLSWFV 263

Query: 82  PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSN 141
           PESPR+L  +GR  EA + L++IA++N  KLP   L                   L    
Sbjct: 264 PESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLS------------LSLEKDL---- 307

Query: 142 GGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRS 201
                +  K   S   +  +  L +TT+ L +L F  +F+YY +VL +  L         
Sbjct: 308 -----SSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNL--------- 353

Query: 202 PLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTL--SCLFLLPL 259
                      N+Y+D FI+ L E+P  L+  +L+D  GR+ ++     L    L LL  
Sbjct: 354 ---------GGNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLF 404

Query: 260 VTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPL 319
           V      L T L    +  +  AF +  +Y AE+YPT VR+ G G  + M R+G ++ P 
Sbjct: 405 VPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPF 464

Query: 320 VAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDT 363
           +          +  V+   + ++  IL++ L   ETKG  L +T
Sbjct: 465 LVYLGEKW-LFLPLVLFGGLALLAGILTLFLP--ETKGVPLPET 505

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter Back     alignment and domain information
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport Back     alignment and domain information
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family Back     alignment and domain information
>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional Back     alignment and domain information
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 Back     alignment and domain information
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter Back     alignment and domain information
>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter Back     alignment and domain information
>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional Back     alignment and domain information
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 Back     alignment and domain information
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily Back     alignment and domain information
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter Back     alignment and domain information
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 369
KOG0253528 consensus Synaptic vesicle transporter SV2 (major 100.0
KOG0569485 consensus Permease of the major facilitator superf 100.0
TIGR01299742 synapt_SV2 synaptic vesicle protein SV2. This mode 100.0
TIGR00887502 2A0109 phosphate:H+ symporter. This model represen 100.0
TIGR00898505 2A0119 cation transport protein. 100.0
PF00083451 Sugar_tr: Sugar (and other) transporter; InterPro: 100.0
KOG0254513 consensus Predicted transporter (major facilitator 100.0
KOG0255521 consensus Synaptic vesicle transporter SVOP and re 99.97
KOG0252538 consensus Inorganic phosphate transporter [Inorgan 99.96
PRK10077479 xylE D-xylose transporter XylE; Provisional 99.96
PRK10642490 proline/glycine betaine transporter; Provisional 99.96
TIGR00879481 SP MFS transporter, sugar porter (SP) family. This 99.93
PRK09952438 shikimate transporter; Provisional 99.93
PRK10406432 alpha-ketoglutarate transporter; Provisional 99.92
TIGR00903368 2A0129 major facilitator 4 family protein. This fa 99.9
PRK11551406 putative 3-hydroxyphenylpropionic transporter MhpT 99.86
PRK15075434 citrate-proton symporter; Provisional 99.86
PRK12307426 putative sialic acid transporter; Provisional 99.85
TIGR00895398 2A0115 benzoate transport. 99.85
PRK10489417 enterobactin exporter EntS; Provisional 99.83
TIGR00891405 2A0112 putative sialic acid transporter. 99.83
TIGR02332412 HpaX 4-hydroxyphenylacetate permease. This protein 99.81
PRK11663434 regulatory protein UhpC; Provisional 99.81
TIGR00883394 2A0106 metabolite-proton symporter. This model rep 99.79
PRK03893496 putative sialic acid transporter; Provisional 99.78
TIGR00893399 2A0114 d-galactonate transporter. 99.78
COG2271448 UhpC Sugar phosphate permease [Carbohydrate transp 99.75
PRK09556467 uhpT sugar phosphate antiporter; Reviewed 99.75
PRK11273452 glpT sn-glycerol-3-phosphate transporter; Provisio 99.74
PRK11010491 ampG muropeptide transporter; Validated 99.72
TIGR00712438 glpT glycerol-3-phosphate transporter. This model 99.72
PRK05122399 major facilitator superfamily transporter; Provisi 99.71
PRK03545390 putative arabinose transporter; Provisional 99.71
TIGR00899375 2A0120 sugar efflux transporter. This family of pr 99.7
TIGR00894465 2A0114euk Na(+)-dependent inorganic phosphate cotr 99.69
TIGR00890377 2A0111 Oxalate/Formate Antiporter. 99.68
PLN00028476 nitrate transmembrane transporter; Provisional 99.67
cd06174352 MFS The Major Facilitator Superfamily (MFS) is a l 99.67
TIGR00901356 2A0125 AmpG-related permease. 99.66
PRK15011393 sugar efflux transporter B; Provisional 99.66
PRK12382392 putative transporter; Provisional 99.66
PRK03699394 putative transporter; Provisional 99.66
PRK09705393 cynX putative cyanate transporter; Provisional 99.66
TIGR00900365 2A0121 H+ Antiporter protein. 99.65
PRK11902402 ampG muropeptide transporter; Reviewed 99.62
TIGR00881379 2A0104 phosphoglycerate transporter family protein 99.61
COG2814394 AraJ Arabinose efflux permease [Carbohydrate trans 99.6
TIGR00897402 2A0118 polyol permease family. This family of prot 99.58
PRK10504471 putative transporter; Provisional 99.57
PRK10473392 multidrug efflux system protein MdtL; Provisional 99.56
PRK09874408 drug efflux system protein MdtG; Provisional 99.56
TIGR00711485 efflux_EmrB drug resistance transporter, EmrB/QacA 99.56
TIGR00710385 efflux_Bcr_CflA drug resistance transporter, Bcr/C 99.55
PRK08633 1146 2-acyl-glycerophospho-ethanolamine acyltransferase 99.55
PF07690352 MFS_1: Major Facilitator Superfamily; InterPro: IP 99.54
PRK10213394 nepI ribonucleoside transporter; Reviewed 99.54
PRK15034462 nitrate/nitrite transport protein NarU; Provisiona 99.53
PRK11195393 lysophospholipid transporter LplT; Provisional 99.52
PRK11102377 bicyclomycin/multidrug efflux system; Provisional 99.51
PRK10091382 MFS transport protein AraJ; Provisional 99.5
PRK15402406 multidrug efflux system translocase MdfA; Provisio 99.48
TIGR00792437 gph sugar (Glycoside-Pentoside-Hexuronide) transpo 99.47
KOG2533495 consensus Permease of the major facilitator superf 99.47
PRK11043401 putative transporter; Provisional 99.47
TIGR02718390 sider_RhtX_FptX siderophore transporter, RhtX/FptX 99.46
TIGR00889418 2A0110 nucleoside transporter. This family of prot 99.46
COG2223417 NarK Nitrate/nitrite transporter [Inorganic ion tr 99.46
TIGR00892455 2A0113 monocarboxylate transporter 1. 99.45
PRK09528420 lacY galactoside permease; Reviewed 99.42
TIGR00886366 2A0108 nitrite extrusion protein (nitrite facilita 99.42
PRK06814 1140 acylglycerophosphoethanolamine acyltransferase; Pr 99.42
KOG2532466 consensus Permease of the major facilitator superf 99.4
PF11700477 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 99.39
PRK11646400 multidrug resistance protein MdtH; Provisional 99.39
TIGR00902382 2A0127 phenyl proprionate permease family protein. 99.38
PRK14995495 methyl viologen resistance protein SmvA; Provision 99.38
PRK03633381 putative MFS family transporter protein; Provision 99.34
PRK10054395 putative transporter; Provisional 99.33
TIGR00882396 2A0105 oligosaccharide:H+ symporter. 99.33
TIGR00885410 fucP L-fucose:H+ symporter permease. This family d 99.33
PRK11128382 putative 3-phenylpropionic acid transporter; Provi 99.32
TIGR01272310 gluP glucose/galactose transporter. Disruption of 99.32
PRK10133438 L-fucose transporter; Provisional 99.31
TIGR00880141 2_A_01_02 Multidrug resistance protein. 99.3
PRK11652394 emrD multidrug resistance protein D; Provisional 99.28
TIGR00896355 CynX cyanate transporter. This family of proteins 99.27
PRK11551 406 putative 3-hydroxyphenylpropionic transporter MhpT 99.27
TIGR00710 385 efflux_Bcr_CflA drug resistance transporter, Bcr/C 99.26
PLN00028 476 nitrate transmembrane transporter; Provisional 99.26
TIGR02332 412 HpaX 4-hydroxyphenylacetate permease. This protein 99.25
TIGR00895 398 2A0115 benzoate transport. 99.24
PF05977 524 MFS_3: Transmembrane secretion effector; InterPro: 99.23
PRK15402 406 multidrug efflux system translocase MdfA; Provisio 99.23
PRK15403413 multidrug efflux system protein MdtM; Provisional 99.22
TIGR01299 742 synapt_SV2 synaptic vesicle protein SV2. This mode 99.22
PRK10473 392 multidrug efflux system protein MdtL; Provisional 99.22
PF07690 352 MFS_1: Major Facilitator Superfamily; InterPro: IP 99.21
PRK10213 394 nepI ribonucleoside transporter; Reviewed 99.2
PRK15403 413 multidrug efflux system protein MdtM; Provisional 99.2
TIGR00893 399 2A0114 d-galactonate transporter. 99.2
PRK10054 395 putative transporter; Provisional 99.19
PRK11663 434 regulatory protein UhpC; Provisional 99.19
PRK10504 471 putative transporter; Provisional 99.18
PRK03893 496 putative sialic acid transporter; Provisional 99.18
PRK15462 493 dipeptide/tripeptide permease D; Provisional 99.18
TIGR00711 485 efflux_EmrB drug resistance transporter, EmrB/QacA 99.17
TIGR00891 405 2A0112 putative sialic acid transporter. 99.17
KOG2504509 consensus Monocarboxylate transporter [Carbohydrat 99.16
PRK12307 426 putative sialic acid transporter; Provisional 99.15
PRK03699 394 putative transporter; Provisional 99.15
PRK03545 390 putative arabinose transporter; Provisional 99.14
TIGR00788468 fbt folate/biopterin transporter. The only functio 99.11
TIGR00900 365 2A0121 H+ Antiporter protein. 99.09
PRK11273 452 glpT sn-glycerol-3-phosphate transporter; Provisio 99.09
PRK11102 377 bicyclomycin/multidrug efflux system; Provisional 99.08
PRK14995 495 methyl viologen resistance protein SmvA; Provision 99.07
PRK09669444 putative symporter YagG; Provisional 99.07
PRK11652 394 emrD multidrug resistance protein D; Provisional 99.06
TIGR00881 379 2A0104 phosphoglycerate transporter family protein 99.05
TIGR00712 438 glpT glycerol-3-phosphate transporter. This model 99.05
PRK09874 408 drug efflux system protein MdtG; Provisional 99.03
TIGR00886 366 2A0108 nitrite extrusion protein (nitrite facilita 99.02
PRK10091 382 MFS transport protein AraJ; Provisional 99.02
PRK10429473 melibiose:sodium symporter; Provisional 99.02
TIGR00903 368 2A0129 major facilitator 4 family protein. This fa 99.01
TIGR00924 475 yjdL_sub1_fam amino acid/peptide transporter (Pept 99.0
TIGR00887 502 2A0109 phosphate:H+ symporter. This model represen 99.0
cd06174 352 MFS The Major Facilitator Superfamily (MFS) is a l 98.98
PRK15034 462 nitrate/nitrite transport protein NarU; Provisiona 98.98
PRK11646 400 multidrug resistance protein MdtH; Provisional 98.97
TIGR00924475 yjdL_sub1_fam amino acid/peptide transporter (Pept 98.97
PRK11043 401 putative transporter; Provisional 98.96
PRK11462460 putative transporter; Provisional 98.95
TIGR00890 377 2A0111 Oxalate/Formate Antiporter. 98.95
PF13347428 MFS_2: MFS/sugar transport protein 98.95
KOG1330493 consensus Sugar transporter/spinster transmembrane 98.94
PF03825400 Nuc_H_symport: Nucleoside H+ symporter 98.94
COG2270438 Permeases of the major facilitator superfamily [Ge 98.93
TIGR01301477 GPH_sucrose GPH family sucrose/H+ symporter. This 98.93
PRK10642 490 proline/glycine betaine transporter; Provisional 98.93
PRK10207 489 dipeptide/tripeptide permease B; Provisional 98.91
COG2807395 CynX Cyanate permease [Inorganic ion transport and 98.88
KOG0255 521 consensus Synaptic vesicle transporter SVOP and re 98.87
TIGR00898 505 2A0119 cation transport protein. 98.86
TIGR00894 465 2A0114euk Na(+)-dependent inorganic phosphate cotr 98.86
PRK10406 432 alpha-ketoglutarate transporter; Provisional 98.85
PRK10489 417 enterobactin exporter EntS; Provisional 98.84
TIGR00879 481 SP MFS transporter, sugar porter (SP) family. This 98.84
PRK10077 479 xylE D-xylose transporter XylE; Provisional 98.84
PRK11195 393 lysophospholipid transporter LplT; Provisional 98.84
PRK15075 434 citrate-proton symporter; Provisional 98.83
PF06609599 TRI12: Fungal trichothecene efflux pump (TRI12); I 98.82
PRK05122 399 major facilitator superfamily transporter; Provisi 98.81
PRK03633 381 putative MFS family transporter protein; Provision 98.81
TIGR00892 455 2A0113 monocarboxylate transporter 1. 98.81
COG2271 448 UhpC Sugar phosphate permease [Carbohydrate transp 98.8
KOG2615 451 consensus Permease of the major facilitator superf 98.8
TIGR00897 402 2A0118 polyol permease family. This family of prot 98.8
PRK09556 467 uhpT sugar phosphate antiporter; Reviewed 98.79
TIGR00805633 oat sodium-independent organic anion transporter. 98.79
PTZ00207591 hypothetical protein; Provisional 98.78
PF01306412 LacY_symp: LacY proton/sugar symporter; InterPro: 98.78
PRK09584 500 tppB putative tripeptide transporter permease; Rev 98.77
TIGR00885 410 fucP L-fucose:H+ symporter permease. This family d 98.76
TIGR00899 375 2A0120 sugar efflux transporter. This family of pr 98.76
COG2814 394 AraJ Arabinose efflux permease [Carbohydrate trans 98.76
PRK09584500 tppB putative tripeptide transporter permease; Rev 98.76
PRK09705 393 cynX putative cyanate transporter; Provisional 98.76
PRK10207489 dipeptide/tripeptide permease B; Provisional 98.75
PF05977 524 MFS_3: Transmembrane secretion effector; InterPro: 98.73
PRK09952 438 shikimate transporter; Provisional 98.69
PRK11010 491 ampG muropeptide transporter; Validated 98.68
PRK12382 392 putative transporter; Provisional 98.66
COG2223 417 NarK Nitrate/nitrite transporter [Inorganic ion tr 98.65
PRK08633 1146 2-acyl-glycerophospho-ethanolamine acyltransferase 98.65
COG0738422 FucP Fucose permease [Carbohydrate transport and m 98.63
TIGR01301 477 GPH_sucrose GPH family sucrose/H+ symporter. This 98.62
PRK10133 438 L-fucose transporter; Provisional 98.62
PRK06814 1140 acylglycerophosphoethanolamine acyltransferase; Pr 98.61
COG2211467 MelB Na+/melibiose symporter and related transport 98.55
PTZ00207 591 hypothetical protein; Provisional 98.54
PF06609 599 TRI12: Fungal trichothecene efflux pump (TRI12); I 98.52
TIGR00883 394 2A0106 metabolite-proton symporter. This model rep 98.51
TIGR00806511 rfc RFC reduced folate carrier. Proteins of the RF 98.47
TIGR00901 356 2A0125 AmpG-related permease. 98.46
PRK09528 420 lacY galactoside permease; Reviewed 98.46
PRK15011 393 sugar efflux transporter B; Provisional 98.43
KOG0254 513 consensus Predicted transporter (major facilitator 98.43
TIGR00806 511 rfc RFC reduced folate carrier. Proteins of the RF 98.39
PRK09848448 glucuronide transporter; Provisional 98.39
KOG1330 493 consensus Sugar transporter/spinster transmembrane 98.38
TIGR00896 355 CynX cyanate transporter. This family of proteins 98.36
KOG0569 485 consensus Permease of the major facilitator superf 98.36
PRK11902 402 ampG muropeptide transporter; Reviewed 98.33
KOG4686459 consensus Predicted sugar transporter [Carbohydrat 98.29
TIGR00882 396 2A0105 oligosaccharide:H+ symporter. 98.24
KOG3764 464 consensus Vesicular amine transporter [Intracellul 98.24
TIGR00805 633 oat sodium-independent organic anion transporter. 98.17
KOG2615451 consensus Permease of the major facilitator superf 98.07
KOG3764464 consensus Vesicular amine transporter [Intracellul 98.06
KOG2816 463 consensus Predicted transporter ADD1 (major facili 98.03
TIGR00792 437 gph sugar (Glycoside-Pentoside-Hexuronide) transpo 98.0
TIGR02718 390 sider_RhtX_FptX siderophore transporter, RhtX/FptX 97.99
PF03209403 PUCC: PUCC protein; InterPro: IPR004896 This prote 97.99
TIGR00902 382 2A0127 phenyl proprionate permease family protein. 97.98
PF06813250 Nodulin-like: Nodulin-like; InterPro: IPR010658 Th 97.97
COG3104 498 PTR2 Dipeptide/tripeptide permease [Amino acid tra 97.97
PF00083 451 Sugar_tr: Sugar (and other) transporter; InterPro: 97.95
PRK11128 382 putative 3-phenylpropionic acid transporter; Provi 97.91
KOG2563480 consensus Permease of the major facilitator superf 97.88
PRK15462493 dipeptide/tripeptide permease D; Provisional 97.87
COG0738 422 FucP Fucose permease [Carbohydrate transport and m 97.85
TIGR00788 468 fbt folate/biopterin transporter. The only functio 97.84
KOG2532 466 consensus Permease of the major facilitator superf 97.81
KOG3098461 consensus Uncharacterized conserved protein [Funct 97.78
PF03092433 BT1: BT1 family; InterPro: IPR004324 Members of th 97.77
TIGR00889 418 2A0110 nucleoside transporter. This family of prot 97.62
KOG2504 509 consensus Monocarboxylate transporter [Carbohydrat 97.47
TIGR00880141 2_A_01_02 Multidrug resistance protein. 97.47
PRK09669 444 putative symporter YagG; Provisional 97.46
PF11700 477 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 97.45
PRK10429 473 melibiose:sodium symporter; Provisional 97.42
KOG0252 538 consensus Inorganic phosphate transporter [Inorgan 97.41
PF01770412 Folate_carrier: Reduced folate carrier; InterPro: 97.38
PF03137539 OATP: Organic Anion Transporter Polypeptide (OATP) 97.36
PF13347 428 MFS_2: MFS/sugar transport protein 97.36
KOG0253 528 consensus Synaptic vesicle transporter SV2 (major 97.35
KOG2533 495 consensus Permease of the major facilitator superf 97.32
PRK11462 460 putative transporter; Provisional 97.26
KOG3762618 consensus Predicted transporter [General function 97.24
KOG2816463 consensus Predicted transporter ADD1 (major facili 97.05
TIGR00926 654 2A1704 Peptide:H+ symporter (also transports b-lac 96.94
KOG3626 735 consensus Organic anion transporter [Secondary met 96.93
PF01306 412 LacY_symp: LacY proton/sugar symporter; InterPro: 96.62
TIGR00769 472 AAA ADP/ATP carrier protein family. These proteins 96.49
PF03092 433 BT1: BT1 family; InterPro: IPR004324 Members of th 96.47
COG2211 467 MelB Na+/melibiose symporter and related transport 96.42
KOG2563 480 consensus Permease of the major facilitator superf 96.3
PF05631 354 DUF791: Protein of unknown function (DUF791); Inte 96.24
KOG3810433 consensus Micronutrient transporters (folate trans 96.19
PF03825 400 Nuc_H_symport: Nucleoside H+ symporter 96.17
KOG2325 488 consensus Predicted transporter/transmembrane prot 95.63
PF05978156 UNC-93: Ion channel regulatory protein UNC-93; Int 95.54
PRK09848 448 glucuronide transporter; Provisional 95.47
PF03209 403 PUCC: PUCC protein; InterPro: IPR004896 This prote 95.29
COG0477 338 ProP Permeases of the major facilitator superfamil 94.89
TIGR01272 310 gluP glucose/galactose transporter. Disruption of 94.83
PF02487402 CLN3: CLN3 protein; InterPro: IPR003492 Batten's d 93.94
KOG2325488 consensus Predicted transporter/transmembrane prot 93.36
PF1283277 MFS_1_like: MFS_1 like family 90.78
PF07672267 MFS_Mycoplasma: Mycoplasma MFS transporter; InterP 90.62
COG3104498 PTR2 Dipeptide/tripeptide permease [Amino acid tra 90.46
TIGR00939437 2a57 Equilibrative Nucleoside Transporter (ENT). 89.8
PF01770 412 Folate_carrier: Reduced folate carrier; InterPro: 88.98
PF03219 491 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 88.65
COG2807 395 CynX Cyanate permease [Inorganic ion transport and 86.53
PF01733309 Nucleoside_tran: Nucleoside transporter; InterPro: 85.2
PF00854 372 PTR2: POT family; InterPro: IPR000109 This entry r 84.44
PF06813250 Nodulin-like: Nodulin-like; InterPro: IPR010658 Th 83.89
COG2270 438 Permeases of the major facilitator superfamily [Ge 80.52
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=2.8e-50  Score=355.50  Aligned_cols=341  Identities=36%  Similarity=0.567  Sum_probs=279.6

Q ss_pred             eeeccCcchhhHhHhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHhhhhHHHHHHHHHHhhccCChh
Q 017592            7 FWERRCGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPR   86 (369)
Q Consensus         7 ~~G~g~~~~~~~y~~E~~p~~~Rg~~~~~~~~~~~~G~l~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESP~   86 (369)
                      .+|+|+.|+..++..|+.|..+|+..+... .+|.+|.+..+.+++..++..|||+..+...+|..+...+.+|+|||||
T Consensus       177 ~~g~gg~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpR  255 (528)
T KOG0253|consen  177 GFGVGGLPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPR  255 (528)
T ss_pred             hccCCCccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcc
Confidence            458888899999999999999999888777 9999999999999999999999999999999999999999999999999


Q ss_pred             hHhhcCChHHHHHHHHHHHHHcCCCCCCccccccccCCCCCCCCCcccccccccCCCCCccCCCchhhHHHHhhcchhhh
Q 017592           87 YLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLAR  166 (369)
Q Consensus        87 ~l~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  166 (369)
                      |++.||+.+||.+.++|+++.|+.+.|..++..+...+++++..+      .++.   +.+..+........++.++.||
T Consensus       256 f~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~------~~~~---~~~a~ke~rg~~~nLlsp~lrk  326 (528)
T KOG0253|consen  256 FYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESD------LDDS---KSSAAKEVRGGTTNLLSPKLRK  326 (528)
T ss_pred             hhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhc------hhhh---hhccccccccchHhhcChHHHH
Confidence            999999999999999999999999999877654332222221110      0100   0011111223577889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCC------Cccc----CCCCChhhHHHHHHHHhhhhhHHHHHHHHH
Q 017592          167 TTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSP------LMFS----HHPQDANLYIDEFITSLAEIPGLLLAAILV  236 (369)
Q Consensus       167 ~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~------~~~~----~~~~~~~~~~~~~i~~~~~~~g~i~~~~l~  236 (369)
                      +++++|.+|++|.++|||..+++..+.+.+..|.-.      +.+-    ...+.. -|.+.++..+.+++|.+++++++
T Consensus       327 ttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~-dYrdllitslaefPGlLIt~~iv  405 (528)
T KOG0253|consen  327 TTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAK-DYRDLLITSLAEFPGLLITGVIV  405 (528)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchh-HHHHHHHHHHhhCCchhHHHHHH
Confidence            999999999999999999998888776554433322      2111    112222 37889999999999999999999


Q ss_pred             hhhchhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhhhHHHHHhhcccccccchhhhHHHHHHHHHHHHHH
Q 017592          237 DTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMV  316 (369)
Q Consensus       237 dr~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~~~~g~~~~~~~i~~~~  316 (369)
                      ||+|||+.+..++++++++.+++....+......+++.+.+++.+++...|+|++|+|||.+|++|.|.|..++|+++++
T Consensus       406 erlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~  485 (528)
T KOG0253|consen  406 ERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIF  485 (528)
T ss_pred             HHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhh
Confidence            99999999999999999998887765555555677888888899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccCcCCCCCC
Q 017592          317 CPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQEL  360 (369)
Q Consensus       317 ~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pETkg~~l  360 (369)
                      +|+++  +....+.+.+..+|+.+++++++.+.++|-|||||++
T Consensus       486 ~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l  527 (528)
T KOG0253|consen  486 SPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL  527 (528)
T ss_pred             hhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence            99998  3454556678999999999999999999999999986

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2 Back     alignment and domain information
>TIGR00887 2A0109 phosphate:H+ symporter Back     alignment and domain information
>TIGR00898 2A0119 cation transport protein Back     alignment and domain information
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters Back     alignment and domain information
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10077 xylE D-xylose transporter XylE; Provisional Back     alignment and domain information
>PRK10642 proline/glycine betaine transporter; Provisional Back     alignment and domain information
>TIGR00879 SP MFS transporter, sugar porter (SP) family Back     alignment and domain information
>PRK09952 shikimate transporter; Provisional Back     alignment and domain information
>PRK10406 alpha-ketoglutarate transporter; Provisional Back     alignment and domain information
>TIGR00903 2A0129 major facilitator 4 family protein Back     alignment and domain information
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional Back     alignment and domain information
>PRK15075 citrate-proton symporter; Provisional Back     alignment and domain information
>PRK12307 putative sialic acid transporter; Provisional Back     alignment and domain information
>TIGR00895 2A0115 benzoate transport Back     alignment and domain information
>PRK10489 enterobactin exporter EntS; Provisional Back     alignment and domain information
>TIGR00891 2A0112 putative sialic acid transporter Back     alignment and domain information
>TIGR02332 HpaX 4-hydroxyphenylacetate permease Back     alignment and domain information
>PRK11663 regulatory protein UhpC; Provisional Back     alignment and domain information
>TIGR00883 2A0106 metabolite-proton symporter Back     alignment and domain information
>PRK03893 putative sialic acid transporter; Provisional Back     alignment and domain information
>TIGR00893 2A0114 d-galactonate transporter Back     alignment and domain information
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK09556 uhpT sugar phosphate antiporter; Reviewed Back     alignment and domain information
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional Back     alignment and domain information
>PRK11010 ampG muropeptide transporter; Validated Back     alignment and domain information
>TIGR00712 glpT glycerol-3-phosphate transporter Back     alignment and domain information
>PRK05122 major facilitator superfamily transporter; Provisional Back     alignment and domain information
>PRK03545 putative arabinose transporter; Provisional Back     alignment and domain information
>TIGR00899 2A0120 sugar efflux transporter Back     alignment and domain information
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter Back     alignment and domain information
>TIGR00890 2A0111 Oxalate/Formate Antiporter Back     alignment and domain information
>PLN00028 nitrate transmembrane transporter; Provisional Back     alignment and domain information
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>TIGR00901 2A0125 AmpG-related permease Back     alignment and domain information
>PRK15011 sugar efflux transporter B; Provisional Back     alignment and domain information
>PRK12382 putative transporter; Provisional Back     alignment and domain information
>PRK03699 putative transporter; Provisional Back     alignment and domain information
>PRK09705 cynX putative cyanate transporter; Provisional Back     alignment and domain information
>TIGR00900 2A0121 H+ Antiporter protein Back     alignment and domain information
>PRK11902 ampG muropeptide transporter; Reviewed Back     alignment and domain information
>TIGR00881 2A0104 phosphoglycerate transporter family protein Back     alignment and domain information
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00897 2A0118 polyol permease family Back     alignment and domain information
>PRK10504 putative transporter; Provisional Back     alignment and domain information
>PRK10473 multidrug efflux system protein MdtL; Provisional Back     alignment and domain information
>PRK09874 drug efflux system protein MdtG; Provisional Back     alignment and domain information
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily Back     alignment and domain information
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily Back     alignment and domain information
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated Back     alignment and domain information
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms Back     alignment and domain information
>PRK10213 nepI ribonucleoside transporter; Reviewed Back     alignment and domain information
>PRK15034 nitrate/nitrite transport protein NarU; Provisional Back     alignment and domain information
>PRK11195 lysophospholipid transporter LplT; Provisional Back     alignment and domain information
>PRK11102 bicyclomycin/multidrug efflux system; Provisional Back     alignment and domain information
>PRK10091 MFS transport protein AraJ; Provisional Back     alignment and domain information
>PRK15402 multidrug efflux system translocase MdfA; Provisional Back     alignment and domain information
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter Back     alignment and domain information
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK11043 putative transporter; Provisional Back     alignment and domain information
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family Back     alignment and domain information
>TIGR00889 2A0110 nucleoside transporter Back     alignment and domain information
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00892 2A0113 monocarboxylate transporter 1 Back     alignment and domain information
>PRK09528 lacY galactoside permease; Reviewed Back     alignment and domain information
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) Back     alignment and domain information
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional Back     alignment and domain information
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions Back     alignment and domain information
>PRK11646 multidrug resistance protein MdtH; Provisional Back     alignment and domain information
>TIGR00902 2A0127 phenyl proprionate permease family protein Back     alignment and domain information
>PRK14995 methyl viologen resistance protein SmvA; Provisional Back     alignment and domain information
>PRK03633 putative MFS family transporter protein; Provisional Back     alignment and domain information
>PRK10054 putative transporter; Provisional Back     alignment and domain information
>TIGR00882 2A0105 oligosaccharide:H+ symporter Back     alignment and domain information
>TIGR00885 fucP L-fucose:H+ symporter permease Back     alignment and domain information
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional Back     alignment and domain information
>TIGR01272 gluP glucose/galactose transporter Back     alignment and domain information
>PRK10133 L-fucose transporter; Provisional Back     alignment and domain information
>TIGR00880 2_A_01_02 Multidrug resistance protein Back     alignment and domain information
>PRK11652 emrD multidrug resistance protein D; Provisional Back     alignment and domain information
>TIGR00896 CynX cyanate transporter Back     alignment and domain information
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional Back     alignment and domain information
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily Back     alignment and domain information
>PLN00028 nitrate transmembrane transporter; Provisional Back     alignment and domain information
>TIGR02332 HpaX 4-hydroxyphenylacetate permease Back     alignment and domain information
>TIGR00895 2A0115 benzoate transport Back     alignment and domain information
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily Back     alignment and domain information
>PRK15402 multidrug efflux system translocase MdfA; Provisional Back     alignment and domain information
>PRK15403 multidrug efflux system protein MdtM; Provisional Back     alignment and domain information
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2 Back     alignment and domain information
>PRK10473 multidrug efflux system protein MdtL; Provisional Back     alignment and domain information
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms Back     alignment and domain information
>PRK10213 nepI ribonucleoside transporter; Reviewed Back     alignment and domain information
>PRK15403 multidrug efflux system protein MdtM; Provisional Back     alignment and domain information
>TIGR00893 2A0114 d-galactonate transporter Back     alignment and domain information
>PRK10054 putative transporter; Provisional Back     alignment and domain information
>PRK11663 regulatory protein UhpC; Provisional Back     alignment and domain information
>PRK10504 putative transporter; Provisional Back     alignment and domain information
>PRK03893 putative sialic acid transporter; Provisional Back     alignment and domain information
>PRK15462 dipeptide/tripeptide permease D; Provisional Back     alignment and domain information
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily Back     alignment and domain information
>TIGR00891 2A0112 putative sialic acid transporter Back     alignment and domain information
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK12307 putative sialic acid transporter; Provisional Back     alignment and domain information
>PRK03699 putative transporter; Provisional Back     alignment and domain information
>PRK03545 putative arabinose transporter; Provisional Back     alignment and domain information
>TIGR00788 fbt folate/biopterin transporter Back     alignment and domain information
>TIGR00900 2A0121 H+ Antiporter protein Back     alignment and domain information
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional Back     alignment and domain information
>PRK11102 bicyclomycin/multidrug efflux system; Provisional Back     alignment and domain information
>PRK14995 methyl viologen resistance protein SmvA; Provisional Back     alignment and domain information
>PRK09669 putative symporter YagG; Provisional Back     alignment and domain information
>PRK11652 emrD multidrug resistance protein D; Provisional Back     alignment and domain information
>TIGR00881 2A0104 phosphoglycerate transporter family protein Back     alignment and domain information
>TIGR00712 glpT glycerol-3-phosphate transporter Back     alignment and domain information
>PRK09874 drug efflux system protein MdtG; Provisional Back     alignment and domain information
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) Back     alignment and domain information
>PRK10091 MFS transport protein AraJ; Provisional Back     alignment and domain information
>PRK10429 melibiose:sodium symporter; Provisional Back     alignment and domain information
>TIGR00903 2A0129 major facilitator 4 family protein Back     alignment and domain information
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial Back     alignment and domain information
>TIGR00887 2A0109 phosphate:H+ symporter Back     alignment and domain information
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>PRK15034 nitrate/nitrite transport protein NarU; Provisional Back     alignment and domain information
>PRK11646 multidrug resistance protein MdtH; Provisional Back     alignment and domain information
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial Back     alignment and domain information
>PRK11043 putative transporter; Provisional Back     alignment and domain information
>PRK11462 putative transporter; Provisional Back     alignment and domain information
>TIGR00890 2A0111 Oxalate/Formate Antiporter Back     alignment and domain information
>PF13347 MFS_2: MFS/sugar transport protein Back     alignment and domain information
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF03825 Nuc_H_symport: Nucleoside H+ symporter Back     alignment and domain information
>COG2270 Permeases of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter Back     alignment and domain information
>PRK10642 proline/glycine betaine transporter; Provisional Back     alignment and domain information
>PRK10207 dipeptide/tripeptide permease B; Provisional Back     alignment and domain information
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>TIGR00898 2A0119 cation transport protein Back     alignment and domain information
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter Back     alignment and domain information
>PRK10406 alpha-ketoglutarate transporter; Provisional Back     alignment and domain information
>PRK10489 enterobactin exporter EntS; Provisional Back     alignment and domain information
>TIGR00879 SP MFS transporter, sugar porter (SP) family Back     alignment and domain information
>PRK10077 xylE D-xylose transporter XylE; Provisional Back     alignment and domain information
>PRK11195 lysophospholipid transporter LplT; Provisional Back     alignment and domain information
>PRK15075 citrate-proton symporter; Provisional Back     alignment and domain information
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins Back     alignment and domain information
>PRK05122 major facilitator superfamily transporter; Provisional Back     alignment and domain information
>PRK03633 putative MFS family transporter protein; Provisional Back     alignment and domain information
>TIGR00892 2A0113 monocarboxylate transporter 1 Back     alignment and domain information
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>TIGR00897 2A0118 polyol permease family Back     alignment and domain information
>PRK09556 uhpT sugar phosphate antiporter; Reviewed Back     alignment and domain information
>TIGR00805 oat sodium-independent organic anion transporter Back     alignment and domain information
>PTZ00207 hypothetical protein; Provisional Back     alignment and domain information
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] Back     alignment and domain information
>PRK09584 tppB putative tripeptide transporter permease; Reviewed Back     alignment and domain information
>TIGR00885 fucP L-fucose:H+ symporter permease Back     alignment and domain information
>TIGR00899 2A0120 sugar efflux transporter Back     alignment and domain information
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK09584 tppB putative tripeptide transporter permease; Reviewed Back     alignment and domain information
>PRK09705 cynX putative cyanate transporter; Provisional Back     alignment and domain information
>PRK10207 dipeptide/tripeptide permease B; Provisional Back     alignment and domain information
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily Back     alignment and domain information
>PRK09952 shikimate transporter; Provisional Back     alignment and domain information
>PRK11010 ampG muropeptide transporter; Validated Back     alignment and domain information
>PRK12382 putative transporter; Provisional Back     alignment and domain information
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated Back     alignment and domain information
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter Back     alignment and domain information
>PRK10133 L-fucose transporter; Provisional Back     alignment and domain information
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional Back     alignment and domain information
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] Back     alignment and domain information
>PTZ00207 hypothetical protein; Provisional Back     alignment and domain information
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins Back     alignment and domain information
>TIGR00883 2A0106 metabolite-proton symporter Back     alignment and domain information
>TIGR00806 rfc RFC reduced folate carrier Back     alignment and domain information
>TIGR00901 2A0125 AmpG-related permease Back     alignment and domain information
>PRK09528 lacY galactoside permease; Reviewed Back     alignment and domain information
>PRK15011 sugar efflux transporter B; Provisional Back     alignment and domain information
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>TIGR00806 rfc RFC reduced folate carrier Back     alignment and domain information
>PRK09848 glucuronide transporter; Provisional Back     alignment and domain information
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00896 CynX cyanate transporter Back     alignment and domain information
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK11902 ampG muropeptide transporter; Reviewed Back     alignment and domain information
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00882 2A0105 oligosaccharide:H+ symporter Back     alignment and domain information
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR00805 oat sodium-independent organic anion transporter Back     alignment and domain information
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter Back     alignment and domain information
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family Back     alignment and domain information
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon Back     alignment and domain information
>TIGR00902 2A0127 phenyl proprionate permease family protein Back     alignment and domain information
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins Back     alignment and domain information
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] Back     alignment and domain information
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters Back     alignment and domain information
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional Back     alignment and domain information
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>PRK15462 dipeptide/tripeptide permease D; Provisional Back     alignment and domain information
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00788 fbt folate/biopterin transporter Back     alignment and domain information
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG3098 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins Back     alignment and domain information
>TIGR00889 2A0110 nucleoside transporter Back     alignment and domain information
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00880 2_A_01_02 Multidrug resistance protein Back     alignment and domain information
>PRK09669 putative symporter YagG; Provisional Back     alignment and domain information
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions Back     alignment and domain information
>PRK10429 melibiose:sodium symporter; Provisional Back     alignment and domain information
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) Back     alignment and domain information
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) Back     alignment and domain information
>PF13347 MFS_2: MFS/sugar transport protein Back     alignment and domain information
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK11462 putative transporter; Provisional Back     alignment and domain information
>KOG3762 consensus Predicted transporter [General function prediction only] Back     alignment and domain information
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) Back     alignment and domain information
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] Back     alignment and domain information
>TIGR00769 AAA ADP/ATP carrier protein family Back     alignment and domain information
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins Back     alignment and domain information
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] Back     alignment and domain information
>PF03825 Nuc_H_symport: Nucleoside H+ symporter Back     alignment and domain information
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] Back     alignment and domain information
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans Back     alignment and domain information
>PRK09848 glucuronide transporter; Provisional Back     alignment and domain information
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon Back     alignment and domain information
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] Back     alignment and domain information
>TIGR01272 gluP glucose/galactose transporter Back     alignment and domain information
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age Back     alignment and domain information
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] Back     alignment and domain information
>PF12832 MFS_1_like: MFS_1 like family Back     alignment and domain information
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) Back     alignment and domain information
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) Back     alignment and domain information
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) Back     alignment and domain information
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions Back     alignment and domain information
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs Back     alignment and domain information
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters Back     alignment and domain information
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins Back     alignment and domain information
>COG2270 Permeases of the major facilitator superfamily [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query369
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 1e-07
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 Back     alignment and structure
 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 52/356 (14%), Positives = 99/356 (27%), Gaps = 73/356 (20%)

Query: 18  SWFLEFVPPSNRGMWMVIFSSFWTIGS-VSEAIGAWIIMPRLDWRWLLGLSSIPSFILLA 76
            W+        RG  + +++    +G  +   +    +    DW   L + +  + ++  
Sbjct: 146 HWW----SQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVAL 201

Query: 77  FLGFQ----PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPP 132
           F        P+S           E              +    K +  +  LP       
Sbjct: 202 FAFAMMRDTPQSCGL----PPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLP------- 250

Query: 133 ELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISEL 192
                      NK         + +      L R  IL W   +                
Sbjct: 251 -----------NKLL-----WYIAIANVFVYLLRYGILDWSPTY---------------- 278

Query: 193 SSLDTRCRSPLMFSHH--PQDANLYIDEFITSLAEIPGLLLAAILVD---TAGRKLSITI 247
                     L    H     ++     F+   A IPG LL   + D      R  +   
Sbjct: 279 ----------LKEVKHFALDKSSWAY--FLYEYAGIPGTLLCGWMSDKVFRGNRGATGVF 326

Query: 248 MFTLS--CLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGA 305
             TL      +  +    +  +    +      + G   +  ++A E+ P     T AG 
Sbjct: 327 FMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGF 386

Query: 306 ANAMGRIGGMVCPLVAVALVANCH--QMTAVVLLVVVIVTSILSVMLIPFETKGQE 359
               G +GG V     V    +        +V++   I+  IL ++++  E +  E
Sbjct: 387 TGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHE 442

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query369
4gc0_A491 D-xylose-proton symporter; MFS, transport protein; 100.0
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 99.85
3o7q_A438 L-fucose-proton symporter; transporter, multi-PASS 99.79
4aps_A491 DI-OR tripeptide H+ symporter; transport protein, 99.71
2cfq_A417 Lactose permease; transport, transport mechanism, 99.69
2gfp_A375 EMRD, multidrug resistance protein D; membrane pro 99.51
2xut_A524 Proton/peptide symporter family protein; transport 99.47
1pw4_A 451 Glycerol-3-phosphate transporter; transmembrane, i 99.41
3o7q_A 438 L-fucose-proton symporter; transporter, multi-PASS 99.33
4aps_A 491 DI-OR tripeptide H+ symporter; transport protein, 99.3
2gfp_A 375 EMRD, multidrug resistance protein D; membrane pro 99.2
2xut_A 524 Proton/peptide symporter family protein; transport 99.14
4gc0_A 491 D-xylose-proton symporter; MFS, transport protein; 98.77
2cfq_A 417 Lactose permease; transport, transport mechanism, 98.0
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* Back     alignment and structure
Probab=100.00  E-value=1.9e-37  Score=300.49  Aligned_cols=322  Identities=20%  Similarity=0.212  Sum_probs=214.3

Q ss_pred             eeccCc---chhhHhHhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhc--------cCCCchhhHhhhhHHHHHHHH
Q 017592            8 WERRCG---HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIM--------PRLDWRWLLGLSSIPSFILLA   76 (369)
Q Consensus         8 ~G~g~~---~~~~~y~~E~~p~~~Rg~~~~~~~~~~~~G~l~~~~~~~~~~--------~~~~WR~~~~~~~ip~~i~~~   76 (369)
                      .|+|.|   ++..+|++|++|+++||+..++.+.++..|.+++..+.+...        ..+.||+++.++.+|.++.++
T Consensus       136 ~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (491)
T 4gc0_A          136 GGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLM  215 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhh
Confidence            355554   677789999999999999999999999999999887776542        235799999999999999999


Q ss_pred             HHhhccCChhhHhhcCChHHHHHHHHHHHHHcCCCCCCccccccccCCCCCCCCCcccccccccCCCCCccCCCchhhHH
Q 017592           77 FLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLF  156 (369)
Q Consensus        77 ~~~~lpESP~~l~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (369)
                      .++++|||||||..|+|.||+++.++|.++.+..+..   ..              +.++..+.       . ++ ....
T Consensus       216 ~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~---~~--------------~~~~~~~~-------~-~~-~~~~  269 (491)
T 4gc0_A          216 LLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQA---VQ--------------EIKHSLDH-------G-RK-TGGR  269 (491)
T ss_dssp             HGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHH---HH--------------HHHHHHHH-------H-HH-HTTH
T ss_pred             hhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHH---HH--------------HHHHHHHh-------h-hh-hhhH
Confidence            9999999999999999999999999998764321100   00              00000000       0 00 0001


Q ss_pred             HHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCcccCCCCChhhHHHHHHHHhhhhhHHHHHHHHH
Q 017592          157 LMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILV  236 (369)
Q Consensus       157 ~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~i~~~~l~  236 (369)
                      ...++  .++..+.....++.+...++.+..+.+.+....           ............+.++..+++.+++++++
T Consensus       270 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  336 (491)
T 4gc0_A          270 LLMFG--VGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTL-----------GASTDIALLQTIIVGVINLTFTVLAIMTV  336 (491)
T ss_dssp             HHHSC--CTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----------SCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhc--ccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhc-----------CCCccchhhHHHHHHHHHHHHHHHHHHHH
Confidence            11111  112222222223333333334444444333111           11222233445666788889999999999


Q ss_pred             hhhchhHHHHHHHHHHHHHHHHHhh---c-cchhHHHHHHH-HHHHHHhhhhHHHHHhhcccccccchhhhHHHHHHHHH
Q 017592          237 DTAGRKLSITIMFTLSCLFLLPLVT---Y-QSNILTTGLLF-GARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGR  311 (369)
Q Consensus       237 dr~GRR~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ElfPt~vR~~~~g~~~~~~~  311 (369)
                      ||+|||+.++.+...+++.++.+..   . ..........+ ....+..+..++.|++.+|+||+++|+++.|+++.+++
T Consensus       337 dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~  416 (491)
T 4gc0_A          337 DKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQW  416 (491)
T ss_dssp             HHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHH
T ss_pred             HhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHH
Confidence            9999999988776655554443321   1 12222222221 22223344456789999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhc------hhhHHHHHHHHHHHHHHHHHHhccCcCCCCCCCCcccccC
Q 017592          312 IGGMVCPLVAVALVANC------HQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDTVDFTS  368 (369)
Q Consensus       312 i~~~~~p~~~~~l~~~~------~~~~~~~~~~~~~~i~~~~~~~~~pETkg~~l~e~~~~~~  368 (369)
                      ++++++++++|.+.+..      +...++++++++++++.+++++++||||||+|||+.+..|
T Consensus       417 ~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~  479 (491)
T 4gc0_A          417 LANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWE  479 (491)
T ss_dssp             HHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhC
Confidence            99999999888664421      2234678888888888888888899999999999766544
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Back     alignment and structure
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Back     alignment and structure
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Back     alignment and structure
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Back     alignment and structure
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Back     alignment and structure
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Back     alignment and structure
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Back     alignment and structure
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Back     alignment and structure
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Back     alignment and structure
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* Back     alignment and structure
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 369
d1pw4a_447 f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es 1e-05
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 44.7 bits (104), Expect = 1e-05
 Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 2/122 (1%)

Query: 240 GRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 299
           G      +        +  +    +  +    +      + G   +  ++A E+ P    
Sbjct: 318 GATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAA 377

Query: 300 STGAGAANAMGRIGGMVCPLVAVALVANCH--QMTAVVLLVVVIVTSILSVMLIPFETKG 357
            T AG     G +GG V     V    +        +V++   I+  IL ++++  E + 
Sbjct: 378 GTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRR 437

Query: 358 QE 359
            E
Sbjct: 438 HE 439

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query369
d1pw4a_447 Glycerol-3-phosphate transporter {Escherichia coli 99.82
d1pv7a_417 Lactose permease {Escherichia coli [TaxId: 562]} 99.61
d1pw4a_ 447 Glycerol-3-phosphate transporter {Escherichia coli 99.26
d1pv7a_ 417 Lactose permease {Escherichia coli [TaxId: 562]} 98.41
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=2.7e-19  Score=167.67  Aligned_cols=309  Identities=11%  Similarity=0.071  Sum_probs=171.8

Q ss_pred             eeccCc---chhhHhHhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHH-hccCCCchhhHhhhhHHHHHH-HHHHhhcc
Q 017592            8 WERRCG---HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWI-IMPRLDWRWLLGLSSIPSFIL-LAFLGFQP   82 (369)
Q Consensus         8 ~G~g~~---~~~~~y~~E~~p~~~Rg~~~~~~~~~~~~G~l~~~~~~~~-~~~~~~WR~~~~~~~ip~~i~-~~~~~~lp   82 (369)
                      .|++.+   +...+++.|+.|+++||++.++.+.++.+|.+++..+... .....+||..+.+.+++.++. ++....++
T Consensus       126 ~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  205 (447)
T d1pw4a_         126 CGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMR  205 (447)
T ss_dssp             HHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcc
Confidence            355543   5566789999999999999999999999998887665544 333468999998887766655 44556677


Q ss_pred             CChhhHhhcCChHHHHHHHHHHHHHcCCCCCCccccccccCCCCCCCCCcccccccccCCCCCccCCCchhhHHHHhhcc
Q 017592           83 ESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSS  162 (369)
Q Consensus        83 ESP~~l~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  162 (369)
                      |+|+....... +|.                        +.+..+.        ..+    +.+++........+..+++
T Consensus       206 ~~~~~~~~~~~-~~~------------------------~~~~~~~--------~~~----~~~~~~~~~~~~~~~~~~~  248 (447)
T d1pw4a_         206 DTPQSCGLPPI-EEY------------------------KNDYPDD--------YNE----KAEQELTAKQIFMQYVLPN  248 (447)
T ss_dssp             CSSTTTCCCSC-TTT------------------------CCC-------------------------CCTHHHHHHTSSC
T ss_pred             cchhhcccchh-hhh------------------------hhhcccc--------hhh----ccccccchhhHHHHHHHcC
Confidence            77754321111 000                        0000000        000    0000000011122223322


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCcccCCCCChhhHHHHHHHHhhhhhHHHHHHHHHhhhchh
Q 017592          163 KLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRK  242 (369)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~i~~~~l~dr~GRR  242 (369)
                      +   .........+......++...+.+.+...          ..+.+.........+..+..+++.++.+++.||++||
T Consensus       249 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  315 (447)
T d1pw4a_         249 K---LLWYIAIANVFVYLLRYGILDWSPTYLKE----------VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRG  315 (447)
T ss_dssp             H---HHHHHHHHHHHHHHHHHHHHHHHHHHBTT----------BSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred             c---hHHHHHHHhhhhhhhhhcchhhhhhhccc----------ccccccchhhhhhhcchhhhhhhhhhhhhhhhhcccc
Confidence            2   22222222333334445555555543321          1111212222334555677888999999999999987


Q ss_pred             HHHHHHHHHHH---HHHHHHhh--ccchhHHHHHHHHHHHHHhhhhHHHHHhhcccccccchhhhHHHHHHHHHHH-HHH
Q 017592          243 LSITIMFTLSC---LFLLPLVT--YQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIG-GMV  316 (369)
Q Consensus       243 ~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~~~~g~~~~~~~i~-~~~  316 (369)
                      ...........   ........  ..+.+....+.+...+...+.....+.+..|.+|++.|+++.|+.+.+++++ .+.
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~  395 (447)
T d1pw4a_         316 NRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVA  395 (447)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            65433222211   11111111  1222333333333344444556678899999999999999999999999875 566


Q ss_pred             HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccCcCCCCCCCCccccc
Q 017592          317 CPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDTVDFT  367 (369)
Q Consensus       317 ~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pETkg~~l~e~~~~~  367 (369)
                      +|.+.+.+.+..+....+++++++.+++.++.+++.+ .+.|..+|..+|.
T Consensus       396 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~e~  445 (447)
T d1pw4a_         396 ASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI-GEKRRHEQLLQEL  445 (447)
T ss_dssp             HHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHGGGGGS
T ss_pred             HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH-hccccHHHHHHhC
Confidence            7888888888776655666666666665555544432 2333334555554
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Back     information, alignment and structure